BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 005178
         (710 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|225427240|ref|XP_002278451.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
           chloroplastic [Vitis vinifera]
          Length = 723

 Score = 1080 bits (2794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 539/715 (75%), Positives = 611/715 (85%), Gaps = 14/715 (1%)

Query: 2   AASLSTALDVHLSIPKSD--TKRPIFLTKPTRRSHPIKINISCNSKSSENVAA------- 52
           +A+L T +DVH SIP     TK P   +K T+ S      I CNS S             
Sbjct: 3   SATLCTGVDVHFSIPHPSHTTKYPNLFSKSTKFSSNT-FTIRCNSSSRSPPKPKPKPKPT 61

Query: 53  --ESPNPETKTLSLSEQLKPLSSTTLSPTKNDRTPLLSKPKSTWVNPTKPRRSVLSLQRQ 110
             +S     +  SLSEQLKPLS T L+   + +T L+SKPKSTW+NPTKP+ SVLSLQR 
Sbjct: 62  SSDSEQTNHQNPSLSEQLKPLSKTILTRDHSGQTHLVSKPKSTWINPTKPKPSVLSLQRH 121

Query: 111 KRSTYSYNPRVRDLKLFARKLNDCDNTEEA-FLRAITEIPHQPTRENALLILNSLKFWQK 169
           KR  YSYNP++RDLKLFA+K+N+ ++++E+ FL  + +IPH PTR+NALL+LNSLK W K
Sbjct: 122 KRHNYSYNPQIRDLKLFAKKINESESSDESEFLAVLEQIPHPPTRDNALLLLNSLKPWPK 181

Query: 170 SYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTII 229
           +Y FFNWIK+QNLFPMETIFYNVTMKSLRFGRQFQLIE+LANEM+S  +ELDNITYSTII
Sbjct: 182 TYLFFNWIKTQNLFPMETIFYNVTMKSLRFGRQFQLIEELANEMISTGVELDNITYSTII 241

Query: 230 TCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWK 289
           TCAKRCNLFD+A++WFERMYKTGLMPDEVTYSAILDVYAK GKVEEVLSLYERG ASGWK
Sbjct: 242 TCAKRCNLFDKAVKWFERMYKTGLMPDEVTYSAILDVYAKLGKVEEVLSLYERGRASGWK 301

Query: 290 PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSL 349
           PDPIAF+VLGKMFGE+GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSL
Sbjct: 302 PDPIAFAVLGKMFGEAGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSL 361

Query: 350 FDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCAD 409
           F+EMV SG+ PD KTLTAL+KIYGKARWA+DALELWERMR N WPMDFILYNTLL+MCAD
Sbjct: 362 FEEMVGSGVIPDAKTLTALVKIYGKARWARDALELWERMRSNGWPMDFILYNTLLSMCAD 421

Query: 410 IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVM 469
           +GL EEAE+LFEDMK S++C+PD++SYTAMLNIYGSGGNVD A++LF+EMSELGV INVM
Sbjct: 422 LGLEEEAEKLFEDMKKSEHCRPDSWSYTAMLNIYGSGGNVDRAMQLFDEMSELGVQINVM 481

Query: 470 GCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCL 529
           GCTCL QCLG+ARRIDDLV+VF VS++RGVKPDDRLCGCLLSVVS CE +ED  KV+ CL
Sbjct: 482 GCTCLSQCLGRARRIDDLVKVFEVSLERGVKPDDRLCGCLLSVVSFCEGAEDANKVLACL 541

Query: 530 QQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERA 589
           QQANPKLVAF+NL+E+    FE +KEEFR ++ DT V+ARRPFCNCLIDICRNR+L+ERA
Sbjct: 542 QQANPKLVAFVNLLEEK-ISFEALKEEFRGILTDTAVEARRPFCNCLIDICRNRSLHERA 600

Query: 590 HELLYLGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQL 649
           HELLYLGTLYGLYPGLHN+T DEW LDVRSLSVGAA TALEEWM TL+KIV REE LP+ 
Sbjct: 601 HELLYLGTLYGLYPGLHNRTADEWCLDVRSLSVGAAHTALEEWMGTLSKIVQREEALPEA 660

Query: 650 FLAETGTGTHKFSQGLATAFASHVNKLAAPFRQSEGKAGCFVATREDLVSWVQAR 704
           F A TGTGTHKFSQGLA+AFASHV KLAAPF QSE KAGCFVATREDLVSWVQ+R
Sbjct: 661 FSANTGTGTHKFSQGLASAFASHVKKLAAPFTQSEEKAGCFVATREDLVSWVQSR 715


>gi|15237467|ref|NP_199470.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180372|sp|Q9LS25.1|PP420_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g46580, chloroplastic; Flags: Precursor
 gi|8885599|dbj|BAA97529.1| unnamed protein product [Arabidopsis thaliana]
 gi|332008017|gb|AED95400.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 711

 Score = 1072 bits (2772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 514/714 (71%), Positives = 610/714 (85%), Gaps = 9/714 (1%)

Query: 1   MAASLSTALDVHLSIPKSDTKRPIFLTKPT--RRSHPIKINISCNSKSSENVAAESPNPE 58
           MA  L+TA+DV  +   SDTK+     KP+  R+S   K+NISC+S        E P   
Sbjct: 1   MATVLTTAIDVCFNPQNSDTKKHSLFLKPSLFRQSRSRKLNISCSSLKQPKTLEEEP-IT 59

Query: 59  TKTLSLSEQLKPLSSTTLSPTKNDRTPLLSKPKSTWVNPTKPRRSVLSLQRQKRSTYSYN 118
           TKT SLSEQLKPLS+TTL   + ++T +LSKPKS WVNPT+P+RSVLSLQRQKRS YSYN
Sbjct: 60  TKTPSLSEQLKPLSATTL---RQEQTQILSKPKSVWVNPTRPKRSVLSLQRQKRSAYSYN 116

Query: 119 PRVRDLKLFARKLNDCDNTEEA-FLRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWI 177
           P+++DL+ FA KLN    TE++ FL  + EIPH P R+NALL+LNSL+ WQK++ FFNW+
Sbjct: 117 PQIKDLRAFALKLNSSIFTEKSEFLSLLDEIPHPPNRDNALLVLNSLREWQKTHTFFNWV 176

Query: 178 KSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNL 237
           KS++LFPMETIFYNVTMKSLRFGRQFQLIE++A EMV + +ELDNITYSTIITCAKRCNL
Sbjct: 177 KSKSLFPMETIFYNVTMKSLRFGRQFQLIEEMALEMVKDGVELDNITYSTIITCAKRCNL 236

Query: 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
           +++AIEWFERMYKTGLMPDEVTYSAILDVY+KSGKVEEVLSLYER VA+GWKPD IAFSV
Sbjct: 237 YNKAIEWFERMYKTGLMPDEVTYSAILDVYSKSGKVEEVLSLYERAVATGWKPDAIAFSV 296

Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
           LGKMFGE+GDYDGIRYVLQEMKS+ V+PN+VVYNTLLEAMG+AGKPGLARSLF+EM+E+G
Sbjct: 297 LGKMFGEAGDYDGIRYVLQEMKSMDVKPNVVVYNTLLEAMGRAGKPGLARSLFNEMLEAG 356

Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417
           LTP+EKTLTAL+KIYGKARWA+DAL+LWE M+  KWPMDFILYNTLLNMCADIGL EEAE
Sbjct: 357 LTPNEKTLTALVKIYGKARWARDALQLWEEMKAKKWPMDFILYNTLLNMCADIGLEEEAE 416

Query: 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
           RLF DMK S  C+PDN+SYTAMLNIYGSGG  + A+ELFEEM + GV +NVMGCTCL+QC
Sbjct: 417 RLFNDMKESVQCRPDNFSYTAMLNIYGSGGKAEKAMELFEEMLKAGVQVNVMGCTCLVQC 476

Query: 478 LGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLV 537
           LGKA+RIDD+V VF +SI RGVKPDDRLCGCLLSV++LCE+SED  KV+ CL++AN KLV
Sbjct: 477 LGKAKRIDDVVYVFDLSIKRGVKPDDRLCGCLLSVMALCESSEDAEKVMACLERANKKLV 536

Query: 538 AFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGT 597
            F+NLI D  T +E +KEEF+ VI  T+V+ARRPFCNCLIDICR  N +ERAHELLYLGT
Sbjct: 537 TFVNLIVDEKTEYETVKEEFKLVINATQVEARRPFCNCLIDICRGNNRHERAHELLYLGT 596

Query: 598 LYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQLFLAETGTG 657
           L+GLYPGLHNKT+ EWSLDVRSLSVGAA+TALEEWM TLA I+ R+E LP+LFLA+TGTG
Sbjct: 597 LFGLYPGLHNKTIKEWSLDVRSLSVGAAETALEEWMRTLANIIKRQEELPELFLAQTGTG 656

Query: 658 THKFSQGLATAFASHVNKLAAPFRQSEGKAGCFVATREDLVSWVQAR-PSSITT 710
           TH+FSQGLA +FA H+ +L+APFRQS+ + G FVAT+EDLVSW++++ P  +T+
Sbjct: 657 THRFSQGLANSFALHLQQLSAPFRQSD-RPGIFVATKEDLVSWLESKFPPLVTS 709


>gi|297791025|ref|XP_002863397.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297309232|gb|EFH39656.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 711

 Score = 1072 bits (2772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 516/714 (72%), Positives = 609/714 (85%), Gaps = 9/714 (1%)

Query: 1   MAASLSTALDVHLSIPKSDTKRPIFLTKPT--RRSHPIKINISCNSKSSENVAAESPNPE 58
           MA  L+TA+DV  +   SDTK+     KP+  R+S   K+NISC+S        E P   
Sbjct: 1   MATVLTTAIDVCFNPQNSDTKKHSLFLKPSLLRQSRTRKLNISCSSLKQPKTLEEEP-IT 59

Query: 59  TKTLSLSEQLKPLSSTTLSPTKNDRTPLLSKPKSTWVNPTKPRRSVLSLQRQKRSTYSYN 118
           TKT SLSEQLKPLS+TTL   + ++T +LSKPKS WVNPT+P+RSVLSLQRQKRS YSYN
Sbjct: 60  TKTPSLSEQLKPLSATTL---RQEQTQILSKPKSVWVNPTRPKRSVLSLQRQKRSAYSYN 116

Query: 119 PRVRDLKLFARKLNDCDNTEEA-FLRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWI 177
           P+++DL+ FA+KLN  + TE++ FL  + EIPH P R+NALL+LNSL+ WQK++ FFNW+
Sbjct: 117 PQIKDLRAFAQKLNSSNFTEKSEFLSLLDEIPHPPDRDNALLVLNSLREWQKTHTFFNWV 176

Query: 178 KSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNL 237
           KS+NLFPMETIFYNVTMKSLRFGRQF LIE++A EMV + +ELDNITYSTIITCAKRCN 
Sbjct: 177 KSKNLFPMETIFYNVTMKSLRFGRQFYLIEEMALEMVKDGVELDNITYSTIITCAKRCNF 236

Query: 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
           +D+AIEWFERMYKTGLMPDEVTYSAILDVY+K  KVEEVLSLYER VA+GWKPD IAFSV
Sbjct: 237 YDKAIEWFERMYKTGLMPDEVTYSAILDVYSKLRKVEEVLSLYERAVATGWKPDAIAFSV 296

Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
           LGKMFGE+GDYDGIRYVLQEMKS+ V+PN+VVYNTLLEAMG+AGKPGLARSLF+EM+E+G
Sbjct: 297 LGKMFGEAGDYDGIRYVLQEMKSMDVKPNVVVYNTLLEAMGRAGKPGLARSLFNEMLEAG 356

Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417
           LTP+EKTLTAL+KIYGKARWAKDAL+LWE M+  KWPMDFILYNTLLNMCADIGL EEAE
Sbjct: 357 LTPNEKTLTALVKIYGKARWAKDALQLWEEMKAKKWPMDFILYNTLLNMCADIGLEEEAE 416

Query: 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
           RLF DMK S  CKPDN+SYTAMLNIYGSGG  + A++LFEEM E GV +NVMGCTCL+QC
Sbjct: 417 RLFNDMKESVQCKPDNFSYTAMLNIYGSGGKAEKAMKLFEEMLEAGVQVNVMGCTCLVQC 476

Query: 478 LGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLV 537
           LGKA+RIDDLV VF +SI RGVKPDDRLCGCLLSV++LCE+SED  KV+ CL++AN KLV
Sbjct: 477 LGKAKRIDDLVYVFDLSIQRGVKPDDRLCGCLLSVMALCESSEDAEKVMACLERANRKLV 536

Query: 538 AFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGT 597
            F+NLI D  T FE +KEEF+ VI  T+V+ARRPFCNCLIDICR +  +ERAHELLYLGT
Sbjct: 537 TFVNLIVDEKTEFETVKEEFKLVINATQVEARRPFCNCLIDICRGKKRHERAHELLYLGT 596

Query: 598 LYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQLFLAETGTG 657
           L+GLYPGLHNKT+ EWSLDVRSLSVGAA+TALEEWM TLA I+ R+E LP+LFLA+TGTG
Sbjct: 597 LFGLYPGLHNKTIKEWSLDVRSLSVGAAETALEEWMRTLANIIKRQEDLPELFLAQTGTG 656

Query: 658 THKFSQGLATAFASHVNKLAAPFRQSEGKAGCFVATREDLVSWVQAR-PSSITT 710
           TH+FSQGLA +FA H+ +L+APFRQS+ +AG FVAT+EDLVSW++++ P  +T+
Sbjct: 657 THRFSQGLANSFALHLQQLSAPFRQSD-RAGIFVATKEDLVSWLESKFPPLVTS 709


>gi|449462001|ref|XP_004148730.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
           chloroplastic-like [Cucumis sativus]
 gi|449521148|ref|XP_004167592.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
           chloroplastic-like [Cucumis sativus]
          Length = 710

 Score = 1041 bits (2691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 526/712 (73%), Positives = 601/712 (84%), Gaps = 10/712 (1%)

Query: 1   MAASLSTALDVHLSIPKSDTKRPIFLTKPTRRSHPIK-INISCNSKSSENVA--AESPNP 57
           MA  LS++LD+ L         PIF T P RR +  K + + C+S  S        S + 
Sbjct: 1   MAVPLSSSLDLKLK------PTPIFFTSPLRRKNVTKRLTLLCSSSKSPRKPSSVSSQSV 54

Query: 58  ETKTLSLSEQLKPLSSTTLSPTKNDRTPLLSKPKSTWVNPTKPRRSVLSLQRQKRSTYSY 117
           + K  SLSEQLK LS+TTLS   ND T LLSKPKSTWVNPTKP+RSVLSLQRQKRS+YSY
Sbjct: 55  DNKNPSLSEQLKNLSTTTLSNAPNDETRLLSKPKSTWVNPTKPKRSVLSLQRQKRSSYSY 114

Query: 118 NPRVRDLKLFARKLNDCDNTEEA-FLRAITEIPHQPTRENALLILNSLKFWQKSYFFFNW 176
           NP++RDLK FA KLN CD++++A F+ A+ EIPH PT+ENALLILNSL+ WQK++ FFNW
Sbjct: 115 NPKMRDLKSFAHKLNACDSSDDASFIAALEEIPHPPTKENALLILNSLRPWQKTHLFFNW 174

Query: 177 IKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCN 236
           IKSQNLFPMETIFYNV MKSLR+GRQFQLIE LANEM+S  IELDNITYSTIITCAK+C+
Sbjct: 175 IKSQNLFPMETIFYNVAMKSLRYGRQFQLIEDLANEMISAGIELDNITYSTIITCAKKCS 234

Query: 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS 296
            FD+A+EWFERMYKTGLMPDEVTYSAILDVYA  GKVEEVLSLYERG ASGW PDP  FS
Sbjct: 235 RFDKAMEWFERMYKTGLMPDEVTYSAILDVYANLGKVEEVLSLYERGRASGWTPDPYTFS 294

Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356
           VLGKMFGE+GDYDGI YVLQEMKS+ +QPNLVVYNTLL+AMGKAGKPG ARSLFDEMVES
Sbjct: 295 VLGKMFGEAGDYDGIMYVLQEMKSIEMQPNLVVYNTLLDAMGKAGKPGFARSLFDEMVES 354

Query: 357 GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEA 416
           G+TP+EKTLTAL+KIYGKARWA+DAL+LWERMR N WPMDFILYNTLLNMCAD+GL EEA
Sbjct: 355 GITPNEKTLTALVKIYGKARWARDALDLWERMRSNGWPMDFILYNTLLNMCADLGLEEEA 414

Query: 417 ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
           E LFE+MK S + +PD++SYTAMLNIYGSGGNV  ++ELFEEM ELGV INVM CTCLIQ
Sbjct: 415 ETLFEEMKKSKHSRPDSWSYTAMLNIYGSGGNVKRSMELFEEMLELGVEINVMCCTCLIQ 474

Query: 477 CLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKL 536
           CLGK+ RIDDLVRVF VS+ +G+KPDDRLCGCLLSV+SLC  SED+ KV TCLQQANPKL
Sbjct: 475 CLGKSGRIDDLVRVFNVSVQKGIKPDDRLCGCLLSVLSLCYNSEDINKVFTCLQQANPKL 534

Query: 537 VAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLG 596
           V+F+NL++ N   FE +K EFRN++ +T  +ARRPFCNCLIDICRN+NL ERAHELLYLG
Sbjct: 535 VSFINLLQQNDITFEVVKNEFRNILGETAPEARRPFCNCLIDICRNQNLRERAHELLYLG 594

Query: 597 TLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQLFLAETGT 656
           +LYGLYPGLHNKT  EW LDVRSLSVGAAQTALEEWM TL+KIV REE LP+L  A+TG 
Sbjct: 595 SLYGLYPGLHNKTETEWCLDVRSLSVGAAQTALEEWMITLSKIVQREEALPELLSAQTGA 654

Query: 657 GTHKFSQGLATAFASHVNKLAAPFRQSEGKAGCFVATREDLVSWVQARPSSI 708
           GTH+FSQGLA +FASHV+KLAAPF+  E +AG FVATREDLV+WV +R  S+
Sbjct: 655 GTHRFSQGLANSFASHVDKLAAPFQLREDRAGWFVATREDLVTWVHSRVPSV 706


>gi|356510655|ref|XP_003524052.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
           chloroplastic-like [Glycine max]
          Length = 712

 Score = 1025 bits (2651), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/716 (69%), Positives = 595/716 (83%), Gaps = 10/716 (1%)

Query: 1   MAASLSTALDVHLSIPKSDTKRPIF-LTKPTRRSHPIKINISCNSKSSENVAAESPNPET 59
           MA  L T +DV+ +    DTKR  F +T P R+    K  I C + +S   A  +P  + 
Sbjct: 1   MATPLPTVVDVYFT----DTKRTRFSITTPCRQKTNRKFFIHCATSNSTPEAPPTPTSDN 56

Query: 60  KTL-----SLSEQLKPLSSTTLSPTKNDRTPLLSKPKSTWVNPTKPRRSVLSLQRQKRST 114
                   SLS+QL PL++ TLS    D++  LSKPKSTWVNPTK +RSVLS +RQKR+T
Sbjct: 57  NNNNKKNTSLSDQLAPLANKTLSSATRDQSYALSKPKSTWVNPTKAKRSVLSSERQKRAT 116

Query: 115 YSYNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTRENALLILNSLKFWQKSYFFF 174
           YSY+P++RDLK FA+KLN+  ++E+ FL  + EIP   +RENALLILN+LK WQK+  F 
Sbjct: 117 YSYSPQLRDLKRFAQKLNESGSSEDEFLACLEEIPRPISRENALLILNTLKPWQKTNLFL 176

Query: 175 NWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKR 234
           NWI++QNL PMETIFYNVTMKSLRFG+QF LIE LA++M+ N + LDNITYSTII+CAK+
Sbjct: 177 NWIRTQNLLPMETIFYNVTMKSLRFGKQFGLIEDLAHQMIDNGVPLDNITYSTIISCAKK 236

Query: 235 CNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIA 294
           CNL+D+A+ WFERMYKTGLMPDEVTYSAILDVYA+ GKVEEV+SLYERG A+GWKPDPI 
Sbjct: 237 CNLYDKAVHWFERMYKTGLMPDEVTYSAILDVYARLGKVEEVISLYERGRATGWKPDPIT 296

Query: 295 FSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMV 354
           FSVLGKMFGE+GDYDGIRYV QEM+S+GVQPNLVVYNTLLEAMGKAGKPG AR LF+EM+
Sbjct: 297 FSVLGKMFGEAGDYDGIRYVFQEMESVGVQPNLVVYNTLLEAMGKAGKPGFARGLFEEMI 356

Query: 355 ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
           ESG+ P+EKTLTA+IKIYGKARW++DALELW+RM+EN WPMDFILYNTLLNMCAD+GLVE
Sbjct: 357 ESGIVPNEKTLTAVIKIYGKARWSRDALELWQRMKENGWPMDFILYNTLLNMCADVGLVE 416

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
           EAE LF DMK S +CKPD++SYTAMLNIYGS G+VD A++LF+EM +LGV +NVMG TCL
Sbjct: 417 EAETLFRDMKQSVHCKPDSWSYTAMLNIYGSQGDVDKAMKLFDEMCKLGVELNVMGFTCL 476

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANP 534
           IQCLG+A   DDLVRVF +S++RG+KPDDRLCGCLLSVVSL + S D  KV+ CLQQANP
Sbjct: 477 IQCLGRAMEFDDLVRVFDISVERGIKPDDRLCGCLLSVVSLSQGSNDEEKVLACLQQANP 536

Query: 535 KLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLY 594
           KLVAF++LIED  T FE +KEEF+ ++ +  V+ RRPFCNCLIDICRN++L ERAHELLY
Sbjct: 537 KLVAFIHLIEDEKTSFETVKEEFKGIMSNAAVEVRRPFCNCLIDICRNKDLLERAHELLY 596

Query: 595 LGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQLFLAET 654
           LGTLYGLYPGLHNKT++EW LDVRSLSVGAA TALEEWMWTL KIV REE LP+LFLA+T
Sbjct: 597 LGTLYGLYPGLHNKTVEEWCLDVRSLSVGAALTALEEWMWTLTKIVKREETLPELFLAQT 656

Query: 655 GTGTHKFSQGLATAFASHVNKLAAPFRQSEGKAGCFVATREDLVSWVQARPSSITT 710
           GTG HKF+QGL  +FASH+ KLAAPF+QSE K GCF+A+REDLVSWVQ++ ++  T
Sbjct: 657 GTGAHKFAQGLNISFASHLRKLAAPFKQSEEKVGCFIASREDLVSWVQSKSTAAAT 712


>gi|357476703|ref|XP_003608637.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509692|gb|AES90834.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 715

 Score = 1023 bits (2646), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/712 (68%), Positives = 585/712 (82%), Gaps = 7/712 (0%)

Query: 1   MAASLSTALDVHLSIPKSDTKRPIFLTKPTR---RSHPIKINISCNSKSSENVAAESPNP 57
           MA SLS++  +H+S   + T R  F   PT    +SH   +  S  S         + N 
Sbjct: 1   MATSLSSS--IHISFLDTKTTRTRFKFPPTTTTLKSHRRFLISSSKSIPDSETTPPNNNN 58

Query: 58  ETKTLSLSEQLKPLSSTTLSPTKNDRTPLLSKPKSTWVNPTKPRRSVLSLQRQKRSTYSY 117
             K  SLS+QL  L++TTLS    ++  +LSKPK TWVNPTK +R VLS QR KRS+ SY
Sbjct: 59  NKKNSSLSDQLASLANTTLSTVPENQPKVLSKPKPTWVNPTKTKRPVLSHQRHKRSSVSY 118

Query: 118 NPRVRDLKLFARKLNDCD--NTEEAFLRAITEIPHQPTRENALLILNSLKFWQKSYFFFN 175
           NP++R+ + FA++LN+CD  +++E F+  + EIP   TR NALL+LNSL+ WQK++ FFN
Sbjct: 119 NPQLREFQRFAQRLNNCDVSSSDEEFMVCLEEIPSSLTRGNALLVLNSLRPWQKTHMFFN 178

Query: 176 WIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRC 235
           WIK+QNL PMETIFYNVTMKSLRFGRQF +IE+LA++M+   +ELDNITYSTII+CAK+C
Sbjct: 179 WIKTQNLLPMETIFYNVTMKSLRFGRQFGIIEELAHQMIDGGVELDNITYSTIISCAKKC 238

Query: 236 NLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAF 295
           NLFD+A+ WFERMYKTGLMPDEVT+SAILDVYA+ GKVEEV++L+ERG A+GWKPDPI F
Sbjct: 239 NLFDKAVYWFERMYKTGLMPDEVTFSAILDVYARLGKVEEVVNLFERGRATGWKPDPITF 298

Query: 296 SVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVE 355
           SVLGKMFGE+GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG ARSLF+EM++
Sbjct: 299 SVLGKMFGEAGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGFARSLFEEMID 358

Query: 356 SGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEE 415
           SG+ P+EKTLTA+IKIYGKARW+KDALELW+RM+EN WPMDFILYNTLLNMCAD+GL+EE
Sbjct: 359 SGIAPNEKTLTAVIKIYGKARWSKDALELWKRMKENGWPMDFILYNTLLNMCADVGLIEE 418

Query: 416 AERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLI 475
           AE LF DMK S++CKPD++SYTAMLNIYGS G VD A++LFEEMS+ G+ +NVMGCTCLI
Sbjct: 419 AETLFRDMKQSEHCKPDSWSYTAMLNIYGSEGAVDKAMKLFEEMSKFGIELNVMGCTCLI 478

Query: 476 QCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPK 535
           QCLGKA  IDDLV+VF +S++RGVKPDDRLCGCLLSVVSL + S+D  KV+ CLQ+ANPK
Sbjct: 479 QCLGKAMEIDDLVKVFDISVERGVKPDDRLCGCLLSVVSLSQGSKDQEKVLACLQRANPK 538

Query: 536 LVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYL 595
           LVAF+ LI D  T FE +KEEF+ ++ +  V+ RRPFCNCLIDICRN++L ERAHELLYL
Sbjct: 539 LVAFIQLIVDEETSFETVKEEFKAIMSNAVVEVRRPFCNCLIDICRNKDLVERAHELLYL 598

Query: 596 GTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQLFLAETG 655
           GTLYG YP LHNKT  EW LDVR+LSVGAA TALEEWM TL KIV REE LP LFLA+TG
Sbjct: 599 GTLYGFYPSLHNKTQYEWCLDVRTLSVGAALTALEEWMTTLTKIVKREEALPDLFLAQTG 658

Query: 656 TGTHKFSQGLATAFASHVNKLAAPFRQSEGKAGCFVATREDLVSWVQARPSS 707
           TG HKF+QGL  +FASH+ KLAAPFRQSE K GCF+AT+EDL+SWVQ+   S
Sbjct: 659 TGAHKFAQGLNISFASHLRKLAAPFRQSEDKVGCFIATKEDLISWVQSNSPS 710


>gi|356563451|ref|XP_003549976.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
           chloroplastic-like [Glycine max]
          Length = 714

 Score = 1020 bits (2638), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/716 (69%), Positives = 595/716 (83%), Gaps = 10/716 (1%)

Query: 1   MAASLSTALDVHLSIPKSDTKRPIF--LTKPTRRSHPIKINISCNSKSSENVAAESP--- 55
           MA  LST +DV+ +    DTKR  F   T P R+    K  I C + +S   A  +P   
Sbjct: 1   MATPLSTVVDVYFT----DTKRTRFSITTTPCRQKTNRKFFIHCATSNSTPEAPPTPTSD 56

Query: 56  -NPETKTLSLSEQLKPLSSTTLSPTKNDRTPLLSKPKSTWVNPTKPRRSVLSLQRQKRST 114
            N + K  SLS+QL PL++ TLS    D++  LSKPKSTWVNPTK +RSVLS +RQKR+T
Sbjct: 57  NNNKKKNTSLSDQLAPLANKTLSSATRDQSYALSKPKSTWVNPTKAKRSVLSSERQKRAT 116

Query: 115 YSYNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTRENALLILNSLKFWQKSYFFF 174
           YSY+P++RDLK FA+KLN+  ++E+AFL  + EIP   +RENALLILN+LK WQK+  F 
Sbjct: 117 YSYSPQLRDLKRFAQKLNESGSSEDAFLACLEEIPRPISRENALLILNTLKPWQKTNLFL 176

Query: 175 NWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKR 234
           NWI++QNL PMETIFYNVTMKSLRFG+QF LIE+LA++M+ N + LDNITYSTII+CAK+
Sbjct: 177 NWIRTQNLLPMETIFYNVTMKSLRFGKQFGLIEELAHQMIDNGVPLDNITYSTIISCAKK 236

Query: 235 CNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIA 294
           CNL+D+A+ WFERMYKT LMPDEVTYSAILDVYA+ GKVEEV+SLYERG A+GWKPDPI 
Sbjct: 237 CNLYDKAVHWFERMYKTSLMPDEVTYSAILDVYARLGKVEEVISLYERGRATGWKPDPIT 296

Query: 295 FSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMV 354
           FSVLGKMFGE+GDYDGIRYV QEM+S+GVQPNLVVYNTLLEAMGKAGKP  AR LF+EM+
Sbjct: 297 FSVLGKMFGEAGDYDGIRYVFQEMESVGVQPNLVVYNTLLEAMGKAGKPVFARGLFEEMI 356

Query: 355 ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
           E G+ P+EKTLTA+IKIYGKARW++DALELW+RM+EN WPMDFILYNTLLNMCAD+GLVE
Sbjct: 357 ELGIVPNEKTLTAVIKIYGKARWSRDALELWQRMKENGWPMDFILYNTLLNMCADVGLVE 416

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
           EAE LF DMK S +CKPD++SYTAMLNIYGS G+VD A++LF EM + GV +NVMG TCL
Sbjct: 417 EAETLFRDMKQSAHCKPDSWSYTAMLNIYGSQGDVDKAMKLFNEMCKSGVELNVMGFTCL 476

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANP 534
           IQCLG+A   DDLVRVFG+S++RG+KPDDRLCGCLLSVVSL + S D  KV+ CLQ+ANP
Sbjct: 477 IQCLGRATEFDDLVRVFGISVERGIKPDDRLCGCLLSVVSLSQGSNDEEKVLACLQRANP 536

Query: 535 KLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLY 594
           KLVAF++LIED  + FE++KEEF+ ++ +  V+ RRPFCNCLIDICRN++L ERAHELLY
Sbjct: 537 KLVAFIHLIEDEKSSFESVKEEFKGIMSNAAVEVRRPFCNCLIDICRNKDLRERAHELLY 596

Query: 595 LGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQLFLAET 654
           LGTLYGLYPGLHNKT +EW LDVRSLSVGAA TALEEWMWTL KIV REE LP+LFLA+T
Sbjct: 597 LGTLYGLYPGLHNKTDNEWCLDVRSLSVGAALTALEEWMWTLTKIVKREETLPELFLAQT 656

Query: 655 GTGTHKFSQGLATAFASHVNKLAAPFRQSEGKAGCFVATREDLVSWVQARPSSITT 710
           GTG HKF+QGL  +FASH+ KLAAPF+QSE K GCF+A+REDLVSWVQ++ ++  T
Sbjct: 657 GTGAHKFAQGLNISFASHLRKLAAPFKQSEEKIGCFIASREDLVSWVQSKSTAAAT 712


>gi|255557625|ref|XP_002519842.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540888|gb|EEF42446.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 677

 Score =  932 bits (2410), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/720 (68%), Positives = 555/720 (77%), Gaps = 57/720 (7%)

Query: 2   AASLSTALDVHLSIPK-SDTKRPIFLTKP-----TRRSHPIK--INISCNSKSSENVAAE 53
           AASLS A D HL+I   SD K+PI  T       T  ++P +  + ISCNS+ +    +E
Sbjct: 3   AASLSAAPDFHLTITHHSDKKKPILFTSSSPITITHNNNPYRRRLTISCNSRKTSKHLSE 62

Query: 54  SPNPETKTLSLSEQLKPLSSTTLSPTKNDRTPLL---SKPKSTWVNPTKPRRSVLSLQRQ 110
           SPNP  K  SLS+QLKPLSSTTLS T    T      SKP STWVNPTKP+RSVLSLQRQ
Sbjct: 63  SPNP--KNPSLSDQLKPLSSTTLSTTTTTTTTKHSLLSKPNSTWVNPTKPKRSVLSLQRQ 120

Query: 111 KRSTYSYNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTRENALLILNSLKFWQKS 170
           KRS YS NP+V++L+LFA+KLNDCD+TE +FL  + +IP+  TRENALLILNSL+ WQK+
Sbjct: 121 KRSPYSLNPKVKELRLFAQKLNDCDSTESSFLSLLEQIPYPLTRENALLILNSLRPWQKA 180

Query: 171 YFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIIT 230
           + FFNWIK+QN FP+ETIFYNVTMKSLRFGRQF+LI++LANEMVSNEIELDNITYSTIIT
Sbjct: 181 HLFFNWIKTQNSFPVETIFYNVTMKSLRFGRQFELIDKLANEMVSNEIELDNITYSTIIT 240

Query: 231 CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
           CAKRCN FD A+EWFERMYKTGLMPDEVTYSAILDVYAK G+VEEVLSLYERGVASGWKP
Sbjct: 241 CAKRCNRFDMALEWFERMYKTGLMPDEVTYSAILDVYAKLGRVEEVLSLYERGVASGWKP 300

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
           DPI FSVL KMFGE+GDYDGIRYVLQEMKSL VQPN+VVYNTLLEAMGKAGKPGLARSLF
Sbjct: 301 DPITFSVLAKMFGEAGDYDGIRYVLQEMKSLAVQPNVVVYNTLLEAMGKAGKPGLARSLF 360

Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
           DEMVESGLTP+EKTLTAL KIYGKARWAKDA+ELWERMR N WPMDFILYNTLL+MCAD+
Sbjct: 361 DEMVESGLTPNEKTLTALAKIYGKARWAKDAMELWERMRSNDWPMDFILYNTLLSMCADL 420

Query: 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG 470
           G+ +EAE LFEDMK S++C              G    VD+ + +F    E GV  +   
Sbjct: 421 GMEKEAETLFEDMKRSEHCSQI---------CLGKANRVDDLVRVFNFSMERGVNPDDRL 471

Query: 471 CTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQ 530
           C C                                   LLSVVSLCE SEDV KV+ CLQ
Sbjct: 472 CGC-----------------------------------LLSVVSLCEESEDVDKVLACLQ 496

Query: 531 QANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAH 590
            ANPKLVA + LI +  + FE +KEEF+ ++ DT V+ARRPFCNCLID+CRNRNL+ RAH
Sbjct: 497 VANPKLVALVKLIAEEESSFETVKEEFKAIVSDTAVEARRPFCNCLIDVCRNRNLHGRAH 556

Query: 591 ELLYLGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQLF 650
           ELLYLG+LYGLYP LHNKT DEWSLDVRSLSVGAA TALEEWM TL K V R E LP++F
Sbjct: 557 ELLYLGSLYGLYPDLHNKTEDEWSLDVRSLSVGAAHTALEEWMGTLVKFVQRNEALPEIF 616

Query: 651 LAETGTGTHKFSQGLATAFASHVNKLAAPFRQSEGKAGCFVATREDLVSWVQARPSSITT 710
            A TGTGTHKFSQGLA AFASHV KLAAPFRQSE KAGCFVATREDLV+W Q+R  S+ T
Sbjct: 617 SAHTGTGTHKFSQGLANAFASHVEKLAAPFRQSEEKAGCFVATREDLVTWAQSRSPSLIT 676


>gi|242037347|ref|XP_002466068.1| hypothetical protein SORBIDRAFT_01g000640 [Sorghum bicolor]
 gi|241919922|gb|EER93066.1| hypothetical protein SORBIDRAFT_01g000640 [Sorghum bicolor]
          Length = 722

 Score =  679 bits (1753), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/714 (48%), Positives = 483/714 (67%), Gaps = 38/714 (5%)

Query: 16  PKSDTKRPIFLTKPTRRSHPIKINISCNSKSSENVAAESPNPETKTLSLSEQLKPLSSTT 75
           P+S ++     TKP   +      I C+S ++    + SP       SLSEQL+PLS T 
Sbjct: 20  PRSRSRYQHPKTKPKHTA-----TILCSSSAATATGSASP-------SLSEQLEPLSRTL 67

Query: 76  LSPTKNDRTPLLSKP--KSTWVNPTKPRRSVLSLQRQKRSTYSYNPRVRDLKLFARKLN- 132
           L    +  TP+  +P  + TWVNPT+P+ SVLSL R +R + S N     L+   R L  
Sbjct: 68  L---HDKPTPIADRPTPEPTWVNPTRPKPSVLSLSRHRRRSPSANASSAPLQPLLRALRA 124

Query: 133 -----DCDNTEEAFL------RAITEIPHQPTRENALLILNSLK-FWQKSYFFFNWIKS- 179
                D   T +AF                P+  +ALL+LN L   W+K+     W+++ 
Sbjct: 125 LPEDADLAATLDAFFLQQGGQGQGQGQGAAPSPSDALLLLNYLHPSWRKTLSLLAWLRAL 184

Query: 180 -QNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLF 238
               F ++TIF+NV +KSLR  RQ+   E+LA +M+   + LDNITYST+IT A+RC  F
Sbjct: 185 PAGAFQLDTIFFNVALKSLRAARQWPHAERLALDMLDAGVPLDNITYSTLITAARRCRQF 244

Query: 239 DEAIEWFERMYKT-GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
            +A+EWFERMY   G++PDEVTYSA+LDVYA+ G  EEVL+L++R   SGWKPD +AF+V
Sbjct: 245 AKAVEWFERMYAADGVLPDEVTYSAVLDVYAQLGMKEEVLALFDRARGSGWKPDHVAFAV 304

Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
           L KMFGE+GDY+GI++V +EM  +G++PN+ VYN LLEA+GK GKPGLAR+LF+EMVE G
Sbjct: 305 LAKMFGEAGDYEGIQFVFKEMTEVGIKPNIFVYNALLEALGKTGKPGLARNLFEEMVEQG 364

Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417
           + P+ +TLTAL KIYG+ARW +DAL+LW++MRE K P D IL NTLL+MCAD+GLV EAE
Sbjct: 365 VDPNARTLTALAKIYGRARWGRDALQLWDKMRELKLPADNILCNTLLSMCADVGLVNEAE 424

Query: 418 RLFEDMK---LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
           +LF +MK     D  KPD +SYTAM+NIYGS G+ D A++LF EM + G+  N+M  T +
Sbjct: 425 QLFNEMKDPECRDVPKPDKWSYTAMINIYGSNGDTDRALQLFGEMLKGGIEPNIMSYTIV 484

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANP 534
           IQCLGKA+RI   V V    +++G+KPDDRLCGCLLSV++L  + E++  V++ LQ+ N 
Sbjct: 485 IQCLGKAQRIQQAVEVLEAGLEKGLKPDDRLCGCLLSVIAL-SSGEEMEIVLSSLQKFNQ 543

Query: 535 KLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNL-NERAHELL 593
            LV  + ++ D   G ++I +E ++V+     + RRP+CNCLID+CRN     +RA E+ 
Sbjct: 544 NLVKLIRVLSDAQVGADDITKELKSVLNAAAPEVRRPYCNCLIDVCRNHGFPPQRAREVF 603

Query: 594 YLGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQLFLAE 653
           +L   YGLY  L ++  +EWSLD+RSLSVGAA+TA ++WM T+++  ++++ LP+ F   
Sbjct: 604 HLAQTYGLYTKLQSRKDEEWSLDLRSLSVGAAKTAFDDWMQTVSERWVQQKALPESFSVY 663

Query: 654 TGTGTHKFSQGLATAFASHVNKLAAPFRQSEGKAGCFVATREDLVSWVQARPSS 707
           TG+ THKF+QGLA+AFA+H+ ++A PF  SE +AG F+++R+DLVSW+Q   SS
Sbjct: 664 TGSSTHKFAQGLASAFAAHLEQMAVPFHASESQAGSFISSRDDLVSWLQMSSSS 717


>gi|219884651|gb|ACL52700.1| unknown [Zea mays]
          Length = 716

 Score =  675 bits (1742), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/661 (50%), Positives = 468/661 (70%), Gaps = 20/661 (3%)

Query: 63  SLSEQLKPLSSTTLSPTKNDRTPLLSKP--KSTWVNPTKPRRSVLSLQRQKRSTYSYNPR 120
           SLS+QL+PLS T L    +  TP+  +P  + TWVNPTKP+ SVLSL+R +R +   N  
Sbjct: 55  SLSQQLEPLSRTLL---HDKPTPIADRPTPEPTWVNPTKPKPSVLSLRRHRRRSPPANTS 111

Query: 121 VRDLKLFARKLN------DCDNTEEAFLRAITEIPHQPTRENALLILNSLK-FWQKSYFF 173
              L+   R L       D   T +AF          P+  +ALL+LN L   W+KS   
Sbjct: 112 STPLQPLLRALRALPEDADLAGTLDAFFLQQQGQGAAPSPSDALLLLNYLHPSWRKSLSL 171

Query: 174 FNWIKS--QNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITC 231
             W+++     FP++TIF+NV +KSLR  RQ+   E+LA +M+   + LDNITYST+IT 
Sbjct: 172 LAWLRALPAGAFPLDTIFFNVALKSLRAARQWPHAERLALDMLDAGVPLDNITYSTLITA 231

Query: 232 AKRCNLFDEAIEWFERMYKT-GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
           A+RC  F +A+EWFERMY   G++PDEVTYSA+LDVYA+ G  EEVL+L++R   SGWKP
Sbjct: 232 ARRCRQFAKAVEWFERMYAADGVLPDEVTYSAVLDVYAQLGMKEEVLALFDRARGSGWKP 291

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
           D +AF+VL KMFGE+GDYDGI++V +EM+ +G++PN+ VYN LLEA+GK GKPGLAR+LF
Sbjct: 292 DHVAFAVLAKMFGEAGDYDGIQFVFKEMREVGIKPNIFVYNALLEALGKTGKPGLARNLF 351

Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
           +EM++ G+ P+ +TLTAL KIYG+ARW +DAL+LW++MRE K P D IL NTLL+MCAD+
Sbjct: 352 EEMIDQGVEPNARTLTALAKIYGRARWGRDALQLWDKMRELKLPADSILCNTLLSMCADV 411

Query: 411 GLVEEAERLFEDMK---LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
           GLV EAE+LF +MK     D  KPD +SYTAM+NIYGS G+ D+A++LF EM + G+  N
Sbjct: 412 GLVAEAEQLFNEMKGPECRDVPKPDKWSYTAMINIYGSNGDTDSALQLFAEMLKGGIEPN 471

Query: 468 VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVIT 527
           +M  T +IQCLGKARRI   V V    +++G+KPDDRLCGCLLSV++L  + E++  V++
Sbjct: 472 IMSYTIVIQCLGKARRIQQAVEVLESGLEKGLKPDDRLCGCLLSVIAL-SSGEEMEMVLS 530

Query: 528 CLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNL-N 586
            L++ N  LV  + ++ D   G ++I EE ++V+     + RRP+CNCLID+CRN     
Sbjct: 531 SLEKVNQNLVKLIRVLGDAQVGGDDITEELKSVLNSAAPEVRRPYCNCLIDVCRNHGFPP 590

Query: 587 ERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAKIVLREEVL 646
           +RA E+ +L   YGLY  L ++  +EWSLD+RSLSVGAA+TA ++WM T+++   +++ L
Sbjct: 591 QRAREVFHLAQTYGLYSKLQSRKDEEWSLDLRSLSVGAAKTAFDDWMQTVSERWAQQKDL 650

Query: 647 PQLFLAETGTGTHKFSQGLATAFASHVNKLAAPFRQSEGKAGCFVATREDLVSWVQARPS 706
           P+ F   TG+ THKF+QGLA+AFA+H++++A PF  SE +AG F+++R+DLVSW+Q   S
Sbjct: 651 PESFSVYTGSSTHKFAQGLASAFAAHLDQMAVPFHASESQAGSFISSRDDLVSWLQMSRS 710

Query: 707 S 707
           S
Sbjct: 711 S 711


>gi|212274745|ref|NP_001130291.1| uncharacterized protein LOC100191385 [Zea mays]
 gi|194688762|gb|ACF78465.1| unknown [Zea mays]
 gi|223949231|gb|ACN28699.1| unknown [Zea mays]
 gi|414874010|tpg|DAA52567.1| TPA: salt-inducible protein [Zea mays]
          Length = 716

 Score =  675 bits (1741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/661 (50%), Positives = 468/661 (70%), Gaps = 20/661 (3%)

Query: 63  SLSEQLKPLSSTTLSPTKNDRTPLLSKP--KSTWVNPTKPRRSVLSLQRQKRSTYSYNPR 120
           SLS+QL+PLS T L    +  TP+  +P  + TWVNPTKP+ SVLSL+R +R +   N  
Sbjct: 55  SLSQQLEPLSRTLL---HDKPTPIADRPTPEPTWVNPTKPKPSVLSLRRHRRRSPPANTS 111

Query: 121 VRDLKLFARKLN------DCDNTEEAFLRAITEIPHQPTRENALLILNSLK-FWQKSYFF 173
              L+   R L       D   T +AF          P+  +ALL+LN L   W+KS   
Sbjct: 112 STPLQPLLRALRALPEDADLAGTLDAFFLQQQGQGAAPSPSDALLLLNYLHPSWRKSLSL 171

Query: 174 FNWIKS--QNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITC 231
             W+++     FP++TIF+NV +KSLR  RQ+   E+LA +M+   + LDNITYST+IT 
Sbjct: 172 LAWLRALPAGAFPLDTIFFNVALKSLRAARQWPHAERLALDMLDAGVPLDNITYSTLITA 231

Query: 232 AKRCNLFDEAIEWFERMYKT-GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
           A+RC  F +A+EWFERMY   G++PDEVTYSA+LDVYA+ G  EEVL+L++R   SGWKP
Sbjct: 232 ARRCRQFAKAVEWFERMYAADGVLPDEVTYSAVLDVYAQLGMKEEVLALFDRARGSGWKP 291

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
           D +AF+VL KMFGE+GDYDGI++V +EM+ +G++PN+ VYN LLEA+GK GKPGLAR+LF
Sbjct: 292 DHVAFAVLAKMFGEAGDYDGIQFVFKEMREVGIKPNIFVYNALLEALGKTGKPGLARNLF 351

Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
           +EM++ G+ P+ +TLTAL KIYG+ARW +DAL+LW++MRE K P D IL NTLL+MCAD+
Sbjct: 352 EEMIDQGVEPNARTLTALAKIYGRARWGRDALQLWDKMRELKLPADSILCNTLLSMCADV 411

Query: 411 GLVEEAERLFEDMK---LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
           GLV EAE+LF +MK     D  KPD +SYTAM+NIYGS G+ D+A++LF EM + G+  N
Sbjct: 412 GLVAEAEQLFNEMKDPECRDVPKPDKWSYTAMINIYGSNGDTDSALQLFAEMLKGGIEPN 471

Query: 468 VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVIT 527
           +M  T +IQCLGKARRI   V V    +++G+KPDDRLCGCLLSV++L  + E++  V++
Sbjct: 472 IMSYTIVIQCLGKARRIQQAVEVLESGLEKGLKPDDRLCGCLLSVIAL-SSGEEMEMVLS 530

Query: 528 CLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNL-N 586
            L++ N  LV  + ++ D   G ++I EE ++V+     + RRP+CNCLID+CRN     
Sbjct: 531 SLEKVNQNLVKLIRVLGDAQVGGDDITEELKSVLNSAAPEVRRPYCNCLIDVCRNHGFPP 590

Query: 587 ERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAKIVLREEVL 646
           +RA E+ +L   YGLY  L ++  +EWSLD+RSLSVGAA+TA ++WM T+++   +++ L
Sbjct: 591 QRAREVFHLAQTYGLYSKLQSRKDEEWSLDLRSLSVGAAKTAFDDWMQTVSERWAQQKDL 650

Query: 647 PQLFLAETGTGTHKFSQGLATAFASHVNKLAAPFRQSEGKAGCFVATREDLVSWVQARPS 706
           P+ F   TG+ THKF+QGLA+AFA+H++++A PF  SE +AG F+++R+DLVSW+Q   S
Sbjct: 651 PESFSVYTGSSTHKFAQGLASAFAAHLDQMAVPFHASESQAGSFISSRDDLVSWLQMSRS 710

Query: 707 S 707
           S
Sbjct: 711 S 711


>gi|326518288|dbj|BAJ88173.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326527987|dbj|BAJ89045.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 706

 Score =  673 bits (1737), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/694 (49%), Positives = 468/694 (67%), Gaps = 21/694 (3%)

Query: 24  IFLTKPTRRSHPIKINISCNSKSSENVAAESPNPETKTLSLSEQLKPLSSTTLS--PTKN 81
           +F   P    H +K   +    ++   AA S  P     SL++QL+PL+ T L+  PT  
Sbjct: 8   LFHAPPRGHHHNLKTKPATRPTTTLCSAAPSSTP-----SLADQLEPLARTLLTDKPTPA 62

Query: 82  DRTPLLSKPKSTWVNPTKPRRSVLSLQRQKRSTYSYNPRVRDLKLFARKLNDC--DNTEE 139
                   P+ TWVNP++PR +VLSL+RQ+R   S +P    L+   R L     D    
Sbjct: 63  ADRAQRPTPEPTWVNPSRPRPTVLSLRRQRRRPASSHPSSAPLQPLLRDLRALPEDADLA 122

Query: 140 AFLRAITEIPHQP-TRENALLILNSLK-FWQKSYFFFNWIK---SQNLFPMETIFYNVTM 194
             L A   +P  P T  +ALL+LN L   W+K+     +++   +   F ++TI +NV +
Sbjct: 123 PTLHAFFPLPDSPPTSSDALLLLNYLHPSWRKTLSLLAYLRGLPADAGFAVDTILFNVAL 182

Query: 195 KSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTG-- 252
           KSLR  R++   E+LA +MV + + LDNITYST+IT A+RC  F +A+EWFERMY  G  
Sbjct: 183 KSLRAARRWDEAERLALDMVDSGVPLDNITYSTLITAARRCRQFAKAVEWFERMYSPGSA 242

Query: 253 LMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIR 312
           ++PDEVTYSA+LDVYA+    EEVL+L++R   SGWKPD +AF+VL KMFGE+GDYDGI+
Sbjct: 243 VLPDEVTYSAVLDVYAQLRMKEEVLALFDRARGSGWKPDHVAFAVLAKMFGEAGDYDGIQ 302

Query: 313 YVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIY 372
           +V +EM+ +G +PN+ VYN LLEA+GK GKPGLAR+LF+EM   G+ P+ +TLTA+ KIY
Sbjct: 303 FVFKEMREVGTKPNIFVYNALLEALGKTGKPGLARNLFEEMTAEGVEPNARTLTAVAKIY 362

Query: 373 GKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK---LSDYC 429
           G+ARW +DAL+LW++MRE K P D IL NTLL+MCAD+GLV EAE+LFE+MK   L+D  
Sbjct: 363 GRARWGRDALQLWDQMREKKIPADSILCNTLLSMCADVGLVAEAEQLFEEMKDPDLTDVP 422

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
           +PD +SYTAM+NIYGS  + D A++LF EM + G+  N+M  T +IQCLGKA RI D V 
Sbjct: 423 QPDKWSYTAMINIYGSIKDADRALQLFVEMLQSGIEANIMSYTIVIQCLGKANRIRDAVE 482

Query: 490 VFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTG 549
           V    ++RG+KPDDRLCGCLLSVV+L  T E+   V+ CL++ N  LV  + ++ D+  G
Sbjct: 483 VLEAGLERGLKPDDRLCGCLLSVVAL-STGEETELVLACLEKFNRNLVKLIRMLGDDQVG 541

Query: 550 FENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNL-NERAHELLYLGTLYGLYPGLHNK 608
            + +KE+ + V+   E D RRP+CNCLIDIC+N  L   R  EL  L   YGLY  LH +
Sbjct: 542 ADELKEQLKAVLNAAETDVRRPYCNCLIDICQNHGLPARRPRELFRLAQGYGLYSKLHIR 601

Query: 609 TLDEWSLDVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQLFLAETGTGTHKFSQGLATA 668
             DEW LD+RSLSVGAA+TA ++WM  L +  ++ + LPQ F   TG+ THKF+QGLA+A
Sbjct: 602 KDDEWLLDLRSLSVGAAKTAFDDWMAALKERAVQGQTLPQSFNVFTGSSTHKFAQGLASA 661

Query: 669 FASHVNKLAAPFRQSEGKAGCFVATREDLVSWVQ 702
           FA+H+ + AAPFR SE + G FV++R++LV W+Q
Sbjct: 662 FAAHLEEAAAPFRPSESQVGSFVSSRDELVLWLQ 695


>gi|326495542|dbj|BAJ85867.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 706

 Score =  672 bits (1733), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/694 (49%), Positives = 468/694 (67%), Gaps = 21/694 (3%)

Query: 24  IFLTKPTRRSHPIKINISCNSKSSENVAAESPNPETKTLSLSEQLKPLSSTTLS--PTKN 81
           +F   P    H +K   +    ++   AA S  P     SL++QL+PL+ T L+  PT  
Sbjct: 8   LFHAPPRGHHHNLKTKPATRPTTTLCSAAPSSTP-----SLADQLEPLARTLLTDKPTPA 62

Query: 82  DRTPLLSKPKSTWVNPTKPRRSVLSLQRQKRSTYSYNPRVRDLKLFARKLNDC--DNTEE 139
                   P+ TWVNP++PR +VLSL+RQ+R   S +P    L+   R L     D    
Sbjct: 63  ADRAQRPTPEPTWVNPSRPRPTVLSLRRQRRRPASSHPSSAPLQPLLRDLRALPEDADLA 122

Query: 140 AFLRAITEIPHQP-TRENALLILNSLK-FWQKSYFFFNWIK---SQNLFPMETIFYNVTM 194
             L A   +P  P T  +ALL+LN L   W+K+     +++   +   F ++TI +NV +
Sbjct: 123 PTLHAFFPLPDSPPTSSDALLLLNYLHPSWRKTLSLLAYLRGLPADAGFAVDTILFNVAL 182

Query: 195 KSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTG-- 252
           KSLR  R++   E+LA +MV + + LDNITYST+IT A+RC  F +A+EWFERMY  G  
Sbjct: 183 KSLRAARRWDEAERLALDMVDSGVPLDNITYSTLITAARRCRQFAKAVEWFERMYSPGSA 242

Query: 253 LMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIR 312
           ++PDEVTYSA+LDVYA+    EEVL+L++R   SGWKPD +AF+VL KMFGE+GDYDGI+
Sbjct: 243 VLPDEVTYSAVLDVYAQLRMKEEVLALFDRARGSGWKPDHVAFAVLAKMFGEAGDYDGIQ 302

Query: 313 YVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIY 372
           +V +EM+ +G +PN+ VYN LLEA+GK GKPGLAR+LF+EM   G+ P+ +TLTA+ KIY
Sbjct: 303 FVFKEMREVGTKPNIFVYNALLEALGKTGKPGLARNLFEEMTAEGVEPNARTLTAVAKIY 362

Query: 373 GKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK---LSDYC 429
           G+ARW +DAL+LW++MRE K P D IL NTLL+MCAD+GLV EAE+LFE+MK   L+D  
Sbjct: 363 GRARWGRDALQLWDQMREKKIPADSILCNTLLSMCADVGLVAEAEQLFEEMKDPDLTDVP 422

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
           +PD +SYTAM+NIYGS  + D A++LF EM + G+  N+M  T +IQCLGKA RI D V 
Sbjct: 423 QPDKWSYTAMINIYGSIKDADRALQLFVEMLQSGIEANIMSYTIVIQCLGKANRIRDAVE 482

Query: 490 VFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTG 549
           +    ++RG+KPDDRLCGCLLSVV+L  T E+   V+ CL++ N  LV  + ++ D+  G
Sbjct: 483 MLEAGLERGLKPDDRLCGCLLSVVAL-STGEETELVLACLEKFNRNLVKLIRMLGDDQVG 541

Query: 550 FENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNL-NERAHELLYLGTLYGLYPGLHNK 608
            + +KE+ + V+   E D RRP+CNCLIDIC+N  L   R  EL  L   YGLY  LH +
Sbjct: 542 ADELKEQLKAVLNAAETDVRRPYCNCLIDICQNHGLPARRPRELFRLAQGYGLYSKLHIR 601

Query: 609 TLDEWSLDVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQLFLAETGTGTHKFSQGLATA 668
             DEW LD+RSLSVGAA+TA ++WM  L +  ++ + LPQ F   TG+ THKF+QGLA+A
Sbjct: 602 KDDEWLLDLRSLSVGAAKTAFDDWMAALKERAVQGQTLPQSFNVFTGSSTHKFAQGLASA 661

Query: 669 FASHVNKLAAPFRQSEGKAGCFVATREDLVSWVQ 702
           FA+H+ + AAPFR SE + G FV++R++LV W+Q
Sbjct: 662 FAAHLEEAAAPFRPSESQVGSFVSSRDELVLWLQ 695


>gi|363543445|ref|NP_001241732.1| salt-inducible protein [Zea mays]
 gi|195610062|gb|ACG26861.1| salt-inducible protein [Zea mays]
          Length = 716

 Score =  670 bits (1728), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/661 (50%), Positives = 466/661 (70%), Gaps = 20/661 (3%)

Query: 63  SLSEQLKPLSSTTLSPTKNDRTPLLSKP--KSTWVNPTKPRRSVLSLQRQKRSTYSYNPR 120
           SLS+QL+PLS T L    +  TP+  +P  + TWVNPTKP+ SVLSL+R +R +   N  
Sbjct: 55  SLSQQLEPLSRTLL---HDKPTPIADRPTPEPTWVNPTKPKPSVLSLRRHRRRSPPANTS 111

Query: 121 VRDLKLFARKLN------DCDNTEEAFLRAITEIPHQPTRENALLILNSLK-FWQKSYFF 173
              L+   R L       D   T +AF          P+  +ALL+LN L   W+KS   
Sbjct: 112 STPLQPLLRALRALPEDADLAGTLDAFFLQQQGQGAAPSPSDALLLLNYLHPSWRKSLSL 171

Query: 174 FNWIKS--QNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITC 231
             W+++     FP++TIF+NV +KSLR  RQ+   E+LA +M+   + LDNITYST+IT 
Sbjct: 172 LAWLRALPAGAFPLDTIFFNVALKSLRAARQWPHAERLALDMLDAGVPLDNITYSTLITA 231

Query: 232 AKRCNLFDEAIEWFERMYKT-GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
           A+RC  F +A+EWFERMY   G++PDEVTYSA+LDVYA+ G  EEVL+L++R   SGWKP
Sbjct: 232 ARRCRQFAKAVEWFERMYAADGVLPDEVTYSAVLDVYAQLGMKEEVLALFDRARGSGWKP 291

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
           D +AF+VL KMFGE+GDYDGI++V +EM+ +G++PN+ VYN LLEA+GK GKPGLAR+LF
Sbjct: 292 DHVAFAVLAKMFGEAGDYDGIQFVFKEMREVGIKPNIFVYNALLEALGKTGKPGLARNLF 351

Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
           +EM++ G+ P+ +TLTAL KIYG+ARW +DAL+LW++MRE K P D IL NTLL+MCAD+
Sbjct: 352 EEMIDQGVEPNARTLTALAKIYGRARWGRDALQLWDKMRELKLPADSILCNTLLSMCADV 411

Query: 411 GLVEEAERLFEDMK---LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
           GLV EAE+LF +MK     D  KPD +SYTAM+NIYGS G+ D+A++LF EM + G+  N
Sbjct: 412 GLVAEAEQLFNEMKDPECRDVPKPDKWSYTAMINIYGSNGDTDSALQLFAEMLKGGIEPN 471

Query: 468 VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVIT 527
           +M  T +IQCLGKA RI   V V    +++G+KPDDRLCGCLLSV++L  + E++  V++
Sbjct: 472 IMSYTIVIQCLGKAHRIQQAVEVLESGLEKGLKPDDRLCGCLLSVIAL-SSGEEMEMVLS 530

Query: 528 CLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNL-N 586
            L++ N  LV  + ++ D   G  +I +E ++V+     + RRP+CNCLID+CRN     
Sbjct: 531 SLEKVNQNLVKLIRVLGDAQVGGYDITKELKSVLNGAAPEVRRPYCNCLIDVCRNHGFPP 590

Query: 587 ERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAKIVLREEVL 646
           +RA E+ +L   YGLY  L ++  +EWSLD+RSLSVGAA+TA ++WM T+++   +++ L
Sbjct: 591 QRAREVFHLAQTYGLYSKLQSRKDEEWSLDLRSLSVGAAKTAFDDWMQTVSERWAQQKDL 650

Query: 647 PQLFLAETGTGTHKFSQGLATAFASHVNKLAAPFRQSEGKAGCFVATREDLVSWVQARPS 706
           P+ F   TG+ THKF+QGLA+AFA+H++++A PF  SE +AG F+++R+DLVSW+Q   S
Sbjct: 651 PESFSVYTGSSTHKFAQGLASAFAAHLDQMAVPFHASESQAGSFISSRDDLVSWLQMSRS 710

Query: 707 S 707
           S
Sbjct: 711 S 711


>gi|218194139|gb|EEC76566.1| hypothetical protein OsI_14394 [Oryza sativa Indica Group]
          Length = 701

 Score =  660 bits (1702), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/654 (50%), Positives = 454/654 (69%), Gaps = 17/654 (2%)

Query: 64  LSEQLKPLSSTTLSPTKNDRTPLLSKPKSTWVNPTKPRRSVLSLQRQKRSTYSYNPRVRD 123
           L+EQL+PLS   L       TP    P+ TWVNP+KP+ +VLSL+R +R + S  P    
Sbjct: 50  LAEQLEPLSRRLL---HGKPTPTQHAPEPTWVNPSKPKPTVLSLRRHRRRSPSSQPFSDP 106

Query: 124 LKLFARKLNDCDNTEE--AFLRAITEIPHQPTRENALLILNSLK-FWQKSYFFFNWIKS- 179
           L+   R +    +  +    L         P+  +ALL+LN L   W+KS     W+++ 
Sbjct: 107 LQTVLRAIRALPDAADLAPTLHDFFPPASPPSTSDALLLLNYLHPSWRKSLSLLCWLRAL 166

Query: 180 -QNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLF 238
               FP++TI +NV +KSLR  RQ+   E+LA +M+++ + LDNITYST+IT A+RC  F
Sbjct: 167 PDGAFPLDTIVFNVALKSLRAARQWPQAERLALDMLASGVPLDNITYSTLITAARRCRQF 226

Query: 239 DEAIEWFERMYKT-GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
           D+A+EWFERMY + G++PDEVTYSAILDVYA+ G  EEVL+L++R   SGWKPD +AF+V
Sbjct: 227 DKAVEWFERMYASDGVLPDEVTYSAILDVYAQLGMKEEVLALFDRARGSGWKPDHVAFAV 286

Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
           L KMFGE+GDYDGI++V +EM+ +G++PN+ VYN LLEA+GK GKPGLAR+LF+EM   G
Sbjct: 287 LAKMFGEAGDYDGIQFVFKEMREVGIKPNIFVYNALLEALGKTGKPGLARNLFEEMTAEG 346

Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417
           + P+ +TLTAL KIYG+ARW +DAL+LWE+MRE K P D IL NTLL+MCAD+GLV EAE
Sbjct: 347 VEPNARTLTALAKIYGRARWGRDALQLWEQMREKKLPADNILCNTLLSMCADVGLVGEAE 406

Query: 418 RLFEDMK---LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
           +LF +MK   L D  KPD +SYTAM+NIYGS G+ D A++LF EM E G+  N+M  T +
Sbjct: 407 QLFSEMKDPDLGDVPKPDKWSYTAMINIYGSSGDADRALQLFAEMVESGIEPNIMSYTIV 466

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANP 534
           IQCLGKA RI + V V    + +G+KPDDRLCGCLLSVV+L  + ++   ++ CL++   
Sbjct: 467 IQCLGKAGRIQEAVDVLEAGMAKGLKPDDRLCGCLLSVVAL-SSGDETEVILACLEKVRS 525

Query: 535 KLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNL-NERAHELL 593
            LV  + ++ D   G E+++ E + ++     + RRP+CNCLIDICRN    +ERA EL 
Sbjct: 526 NLVKLIRMLGDARVGVEDLRVELKGILNSAAPEVRRPYCNCLIDICRNHGYPSERAVELF 585

Query: 594 YLGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQLFLAE 653
            L   YGLY  +H +  +EWSLD+RSLSVGAA+TA ++WM T+ +    EE LPQ F   
Sbjct: 586 RLARHYGLYSKIHTRKEEEWSLDLRSLSVGAAKTAFDDWMKTIRE---HEEALPQTFSVY 642

Query: 654 TGTGTHKFSQGLATAFASHVNKLAAPFRQSEGKAGCFVATREDLVSWVQARPSS 707
           TG+ THKF+QGLATA ASH+ ++ APFR S+ + G F+++R+DL+SW+    SS
Sbjct: 643 TGSSTHKFAQGLATAVASHLEQVGAPFRASDSQLGSFISSRDDLLSWLHTTMSS 696


>gi|357114648|ref|XP_003559110.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
           chloroplastic-like [Brachypodium distachyon]
          Length = 875

 Score =  649 bits (1674), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/657 (50%), Positives = 451/657 (68%), Gaps = 24/657 (3%)

Query: 66  EQLKPLSSTTLS----PTKNDRTPLLSKPKSTWVNPTKPRRSVLSLQRQKRSTYSYNPRV 121
           +QL PLS T L+    P    +      P+ TWVNP+KPR +VLSL R +R   S +P  
Sbjct: 40  DQLHPLSRTLLADKPTPAGAGQQQGRPTPEPTWVNPSKPRPTVLSLSRHRRRPASSHPSS 99

Query: 122 RDLKLFARKLN------DCDNTEEAFLRAITEIPHQPTRENALLILNSLK-FWQKSYFFF 174
             L+   R L       D   T  AF     +    P+  +ALL+LN L   W+KS    
Sbjct: 100 APLQPLIRDLRALPEDADVAPTLRAFF---PDDGGPPSSSDALLLLNYLHPSWRKSLSLL 156

Query: 175 NWIKSQ--NLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           ++++S   + F ++TIF+NV +KSLR  R++   E+LA +MV++ + LDNITYST+IT A
Sbjct: 157 SYLRSLPADAFAVDTIFFNVALKSLRAARRWAECERLALDMVASGVPLDNITYSTLITAA 216

Query: 233 KRCNLFDEAIEWFERMYKTG---LMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWK 289
           +RC  F +A+EWFERMY  G   ++PDEVTYSA+LDVYA+    EEVL+L++R   SGWK
Sbjct: 217 RRCRQFAKAVEWFERMYSPGGGGVLPDEVTYSAVLDVYAQLRMKEEVLALFDRARGSGWK 276

Query: 290 PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSL 349
           PD +AF+VL KMFGE+GDYDGI++V +EM+ +G++PN+ VYN LLEA+GK GKPGLARSL
Sbjct: 277 PDHVAFAVLAKMFGEAGDYDGIQFVFREMREVGIKPNIFVYNALLEALGKTGKPGLARSL 336

Query: 350 FDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCAD 409
           F+EM   G+ P+ +TLTA+ KIYG+ARW +DAL+LWE+MR+ K P D IL NTLL+MCAD
Sbjct: 337 FEEMTAEGVEPNARTLTAVAKIYGRARWGRDALQLWEQMRQKKIPADSILCNTLLSMCAD 396

Query: 410 IGLVEEAERLFEDMK---LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
           +GLV EAE+LFE+MK   LSD  KPD +SYTAM+NIYGS  + D A++LF EM   G+  
Sbjct: 397 VGLVAEAEQLFEEMKDPELSDVPKPDKWSYTAMINIYGSIKDADRALQLFAEMLAEGIEP 456

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           N+M  T +IQCLGK  RI D   V    ++RG+KPDDRLCGCLLSVV+L  + ++   ++
Sbjct: 457 NIMSYTIVIQCLGKTNRIQDAAEVLEAGLERGLKPDDRLCGCLLSVVAL-SSGDETELML 515

Query: 527 TCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNL- 585
            CL++ N  LV  + L+ D   G + +KEE + V+   + + RRP+CNCLIDIC+N    
Sbjct: 516 ACLEKVNRNLVKLIRLLGDAQVGVDELKEELKAVLNAADSEVRRPYCNCLIDICQNHGFP 575

Query: 586 NERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAKIVLREEV 645
             R+ EL +L   YGLY  LH +  +EW LD+RSLSVGAA+TA ++WM T+++   + + 
Sbjct: 576 AHRSGELFHLAQHYGLYSKLHIRKDEEWLLDLRSLSVGAAKTAFDDWMKTISERSAQGKP 635

Query: 646 LPQLFLAETGTGTHKFSQGLATAFASHVNKLAAPFRQSEGKAGCFVATREDLVSWVQ 702
           LP+ F   TG+ THKF+QGLA+AFA H+ + A PFR SE + G FV++R+DLVSW+Q
Sbjct: 636 LPEFFNVFTGSSTHKFAQGLASAFAVHLEETAVPFRPSESQVGSFVSSRDDLVSWLQ 692


>gi|41393251|gb|AAS01974.1| putative chloroplastic RNA-binding protein, with alternative
           splicing isoforms [Oryza sativa Japonica Group]
 gi|108712189|gb|ABF99984.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 884

 Score =  647 bits (1668), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/646 (51%), Positives = 451/646 (69%), Gaps = 15/646 (2%)

Query: 64  LSEQLKPLSSTTLSPTKNDRTPLLSKPKSTWVNPTKPRRSVLSLQRQKRSTYSYNPRVRD 123
           L+EQL+PLS   L       TP    P+ TWVNP+KP+ +VLSL+R +R + S +P    
Sbjct: 47  LAEQLEPLSRRLL---HGKPTPTQHAPEPTWVNPSKPKPTVLSLRRHRRRSPSSHPSSAP 103

Query: 124 LKLFARKLNDCDNTEE--AFLRAITEIPHQPTRENALLILNSLK-FWQKSYFFFNWIKS- 179
           L+   R +    +  +    L         P+  +ALL+LN L   W+KS     W+++ 
Sbjct: 104 LQPLLRAIRALPDAADLAPTLHDFFPPASPPSTSDALLLLNYLHPSWRKSLSLLCWLRAL 163

Query: 180 -QNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLF 238
               FP++TI +NV +KSLR  RQ+   E+LA +M+++ + LDNITYST+IT A+RC  F
Sbjct: 164 PDGAFPLDTIVFNVALKSLRAARQWPQAERLALDMLASGVPLDNITYSTLITAARRCRQF 223

Query: 239 DEAIEWFERMYKT-GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
           D+A+EWFERMY + G++PDEVTYSAILDVYA+ G  EEVL+L++R   SGWKPD +AF+V
Sbjct: 224 DKAVEWFERMYASDGVLPDEVTYSAILDVYAQLGMKEEVLALFDRARGSGWKPDHVAFAV 283

Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
           L KMFGE+GDYDGI++V +EM+ +G++PN+ VYN LLEA+GK GKPGLAR+LF+EM   G
Sbjct: 284 LAKMFGEAGDYDGIQFVFKEMREVGIKPNIFVYNALLEALGKTGKPGLARNLFEEMTAEG 343

Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417
           + P+ +TLTAL KIYG+ARW +DAL+LWE+MRE K P D IL NTLL+MCAD+GLV EAE
Sbjct: 344 VEPNARTLTALAKIYGRARWGRDALQLWEQMREKKLPADNILCNTLLSMCADVGLVGEAE 403

Query: 418 RLFEDMK---LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
           +LF +MK   L D  KPD +SYTAM+NIYGS G+ D A++LF EM E G+  N+M  T +
Sbjct: 404 QLFSEMKDPDLGDVPKPDKWSYTAMINIYGSSGDADRALQLFAEMVESGIEPNIMSYTIV 463

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANP 534
           IQCLGKA RI + V V    + +G+KPDDRLCGCLLSVV+L  + ++   ++ CL++   
Sbjct: 464 IQCLGKAGRIQEAVDVLEAGMAKGLKPDDRLCGCLLSVVAL-SSGDETEVILACLEKVRS 522

Query: 535 KLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNL-NERAHELL 593
            LV  + ++ D   G E+++ E + ++     + RRP+CNCLIDICRN    +ERA EL 
Sbjct: 523 NLVKLIRMLGDARVGVEDLRVELKGILNSAAPEVRRPYCNCLIDICRNHGYPSERAVELF 582

Query: 594 YLGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQLFLAE 653
            L   YGLY  +H +  +EWSLD+RSLSVGAA+TA ++WM T+ +    EE LPQ F   
Sbjct: 583 RLARHYGLYSKIHTRKEEEWSLDLRSLSVGAAKTAFDDWMKTIREHE-EEEALPQTFSVY 641

Query: 654 TGTGTHKFSQGLATAFASHVNKLAAPFRQSEGKAGCFVATREDLVS 699
           TG+ THKF+QGLATA ASH+ ++ APFR S+ + G F+++R+DL+S
Sbjct: 642 TGSSTHKFAQGLATAVASHLEQVGAPFRASDSQLGSFISSRDDLLS 687


>gi|115456691|ref|NP_001051946.1| Os03g0856100 [Oryza sativa Japonica Group]
 gi|41393252|gb|AAS01975.1| putative chloroplastic RNA-binding protein, with alternative
           splicing isoforms [Oryza sativa Japonica Group]
 gi|113550417|dbj|BAF13860.1| Os03g0856100 [Oryza sativa Japonica Group]
 gi|222626198|gb|EEE60330.1| hypothetical protein OsJ_13428 [Oryza sativa Japonica Group]
          Length = 640

 Score =  635 bits (1638), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 304/564 (53%), Positives = 412/564 (73%), Gaps = 10/564 (1%)

Query: 152 PTRENALLILNSLK-FWQKSYFFFNWIKS--QNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           P+  +ALL+LN L   W+KS     W+++     FP++TI +NV +KSLR  RQ+   E+
Sbjct: 74  PSTSDALLLLNYLHPSWRKSLSLLCWLRALPDGAFPLDTIVFNVALKSLRAARQWPQAER 133

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKT-GLMPDEVTYSAILDVY 267
           LA +M+++ + LDNITYST+IT A+RC  FD+A+EWFERMY + G++PDEVTYSAILDVY
Sbjct: 134 LALDMLASGVPLDNITYSTLITAARRCRQFDKAVEWFERMYASDGVLPDEVTYSAILDVY 193

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
           A+ G  EEVL+L++R   SGWKPD +AF+VL KMFGE+GDYDGI++V +EM+ +G++PN+
Sbjct: 194 AQLGMKEEVLALFDRARGSGWKPDHVAFAVLAKMFGEAGDYDGIQFVFKEMREVGIKPNI 253

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
            VYN LLEA+GK GKPGLAR+LF+EM   G+ P+ +TLTAL KIYG+ARW +DAL+LWE+
Sbjct: 254 FVYNALLEALGKTGKPGLARNLFEEMTAEGVEPNARTLTALAKIYGRARWGRDALQLWEQ 313

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK---LSDYCKPDNYSYTAMLNIYG 444
           MRE K P D IL NTLL+MCAD+GLV EAE+LF +MK   L D  KPD +SYTAM+NIYG
Sbjct: 314 MREKKLPADNILCNTLLSMCADVGLVGEAEQLFSEMKDPDLGDVPKPDKWSYTAMINIYG 373

Query: 445 SGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR 504
           S G+ D A++LF EM E G+  N+M  T +IQCLGKA RI + V V    + +G+KPDDR
Sbjct: 374 SSGDADRALQLFAEMVESGIEPNIMSYTIVIQCLGKAGRIQEAVDVLEAGMAKGLKPDDR 433

Query: 505 LCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDT 564
           LCGCLLSVV+L  + ++   ++ CL++    LV  + ++ D   G E+++ E + ++   
Sbjct: 434 LCGCLLSVVAL-SSGDETEVILACLEKVRSNLVKLIRMLGDARVGVEDLRVELKGILNSA 492

Query: 565 EVDARRPFCNCLIDICRNRNL-NERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLSVG 623
             + RRP+CNCLIDICRN    +ERA EL  L   YGLY  +H +  +EWSLD+RSLSVG
Sbjct: 493 APEVRRPYCNCLIDICRNHGYPSERAVELFRLARHYGLYSKIHTRKEEEWSLDLRSLSVG 552

Query: 624 AAQTALEEWMWTLAKIVLREEVLPQLFLAETGTGTHKFSQGLATAFASHVNKLAAPFRQS 683
           AA+TA ++WM T+ +    EE LPQ F   TG+ THKF+QGLATA ASH+ ++ APFR S
Sbjct: 553 AAKTAFDDWMKTIREHE-EEEALPQTFSVYTGSSTHKFAQGLATAVASHLEQVGAPFRAS 611

Query: 684 EGKAGCFVATREDLVSWVQARPSS 707
           + + G F+++R+DL+SW+    SS
Sbjct: 612 DSQLGSFISSRDDLLSWLHTTMSS 635


>gi|224031359|gb|ACN34755.1| unknown [Zea mays]
          Length = 504

 Score =  589 bits (1519), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 273/500 (54%), Positives = 379/500 (75%), Gaps = 6/500 (1%)

Query: 213 MVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKT-GLMPDEVTYSAILDVYAKSG 271
           M+   + LDNITYST+IT A+RC  F +A+EWFERMY   G++PDEVTYSA+LDVYA+ G
Sbjct: 1   MLDAGVPLDNITYSTLITAARRCRQFAKAVEWFERMYAADGVLPDEVTYSAVLDVYAQLG 60

Query: 272 KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYN 331
             EEVL+L++R   SGWKPD +AF+VL KMFGE+GDYDGI++V +EM+ +G++PN+ VYN
Sbjct: 61  MKEEVLALFDRARGSGWKPDHVAFAVLAKMFGEAGDYDGIQFVFKEMREVGIKPNIFVYN 120

Query: 332 TLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN 391
            LLEA+GK GKPGLAR+LF+EM++ G+ P+ +TLTAL KIYG+ARW +DAL+LW++MRE 
Sbjct: 121 ALLEALGKTGKPGLARNLFEEMIDQGVEPNARTLTALAKIYGRARWGRDALQLWDKMREL 180

Query: 392 KWPMDFILYNTLLNMCADIGLVEEAERLFEDMK---LSDYCKPDNYSYTAMLNIYGSGGN 448
           K P D IL NTLL+MCAD+GLV EAE+LF +MK     D  KPD +SYTAM+NIYGS G+
Sbjct: 181 KLPADSILCNTLLSMCADVGLVAEAEQLFNEMKDPECRDVPKPDKWSYTAMINIYGSNGD 240

Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGC 508
            D+A++LF EM + G+  N+M  T +IQCLGKARRI   V V    +++G+KPDDRLCGC
Sbjct: 241 TDSALQLFAEMLKGGIEPNIMSYTIVIQCLGKARRIQQAVEVLESGLEKGLKPDDRLCGC 300

Query: 509 LLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDA 568
           LLSV++L  + E++  V++ L++ N  LV  + ++ D   G ++I EE ++V+     + 
Sbjct: 301 LLSVIAL-SSGEEMEMVLSSLEKVNQNLVKLIRVLGDAQVGGDDITEELKSVLNSAAPEV 359

Query: 569 RRPFCNCLIDICRNRNL-NERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQT 627
           RRP+CNCLID+CRN     +RA E+ +L   YGLY  L ++  +EWSLD+RSLSVGAA+T
Sbjct: 360 RRPYCNCLIDVCRNHGFPPQRAREVFHLAQTYGLYSKLQSRKDEEWSLDLRSLSVGAAKT 419

Query: 628 ALEEWMWTLAKIVLREEVLPQLFLAETGTGTHKFSQGLATAFASHVNKLAAPFRQSEGKA 687
           A ++WM T+++   +++ LP+ F   TG+ THKF+QGLA+AFA+H++++A PF  SE +A
Sbjct: 420 AFDDWMQTVSERWAQQKDLPESFSVYTGSSTHKFAQGLASAFAAHLDQMAVPFHASESQA 479

Query: 688 GCFVATREDLVSWVQARPSS 707
           G F+++R+DLVSW+Q   SS
Sbjct: 480 GSFISSRDDLVSWLQMSRSS 499



 Score = 69.7 bits (169), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 96/207 (46%), Gaps = 11/207 (5%)

Query: 172 FFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITC 231
           F F  ++   + P     YN  +++L    +  L   L  EM+   +E +  T + +   
Sbjct: 102 FVFKEMREVGIKP-NIFVYNALLEALGKTGKPGLARNLFEEMIDQGVEPNARTLTALAKI 160

Query: 232 AKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYE-------RGV 284
             R     +A++ +++M +  L  D +  + +L + A  G V E   L+        R V
Sbjct: 161 YGRARWGRDALQLWDKMRELKLPADSILCNTLLSMCADVGLVAEAEQLFNEMKDPECRDV 220

Query: 285 ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344
               KPD  +++ +  ++G +GD D    +  EM   G++PN++ Y  +++ +GKA +  
Sbjct: 221 P---KPDKWSYTAMINIYGSNGDTDSALQLFAEMLKGGIEPNIMSYTIVIQCLGKARRIQ 277

Query: 345 LARSLFDEMVESGLTPDEKTLTALIKI 371
            A  + +  +E GL PD++    L+ +
Sbjct: 278 QAVEVLESGLEKGLKPDDRLCGCLLSV 304



 Score = 39.7 bits (91), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 2/77 (2%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           QL  EM+   IE + ++Y+ +I C  +     +A+E  E   + GL PD+     +L V 
Sbjct: 246 QLFAEMLKGGIEPNIMSYTIVIQCLGKARRIQQAVEVLESGLEKGLKPDDRLCGCLLSVI 305

Query: 268 AKSG--KVEEVLSLYER 282
           A S   ++E VLS  E+
Sbjct: 306 ALSSGEEMEMVLSSLEK 322


>gi|359495626|ref|XP_002269600.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic [Vitis vinifera]
          Length = 701

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 252/627 (40%), Positives = 385/627 (61%), Gaps = 9/627 (1%)

Query: 81  NDRTPLLSKPKSTWVNPTKPRRSVLSLQRQKRSTYSYNPRVRDLKLFARKLNDCDNTEEA 140
           N + P        WVNP  PR S L   RQ    +SY+ R   L   A  L+ C+ TEE 
Sbjct: 77  NSQDPDRKTKSYIWVNPRSPRASKL---RQ----HSYDARYASLVKIAESLDSCEATEED 129

Query: 141 FLRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFG 200
             + +  +  +   ++A+++LN++   + +   F + + +     E I YNVT+K  R  
Sbjct: 130 VSQVLRCLGDKILEQDAVIVLNNMTNPETALLAFGFFRKRLKPSREVILYNVTLKVFRKC 189

Query: 201 RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTY 260
           R     E+L +EM+   ++ DNIT+STII+CA+  +L ++A+EWFE+M + G  PD+VTY
Sbjct: 190 RNLDRAEKLFDEMLERGVKPDNITFSTIISCARVSSLPNKAVEWFEKMPEFGCHPDDVTY 249

Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
           SA++D Y ++G V+  L LY+R     W+ DP+ FS L +++G SG++DG   V +EMK+
Sbjct: 250 SAMIDAYGRAGNVDMALKLYDRARTEKWRIDPVTFSTLIRIYGMSGNFDGCLNVYEEMKA 309

Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380
           LGV+PNLV+YNTLL+AMG+A +P  A++++ EM  +GL P   T  AL++ YG+AR+A+D
Sbjct: 310 LGVKPNLVIYNTLLDAMGRAKRPWQAKNIYKEMTNNGLQPSWGTYAALLRAYGRARYAED 369

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
           AL +++ M+E    +  +LYNTLL MCAD+G  EEA  +FEDMK S  C PD++++++++
Sbjct: 370 ALIVYKEMKEKGLELSVVLYNTLLAMCADVGYTEEAAAIFEDMKSSGNCMPDSWTFSSLI 429

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
            IY   G V  A  +   M E G   N+   T LIQC GKA R D++VR F   ++  + 
Sbjct: 430 TIYSCSGKVSEAEAMLNAMLEAGFEPNIFVLTSLIQCYGKANRTDEVVRTFDRLLELDIT 489

Query: 501 PDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNV 560
           PDDR CGC+L+V++     E++GK+I C+ +ANPKL   + L+ +   G    ++E   +
Sbjct: 490 PDDRFCGCMLNVMTQ-SPKEELGKLIDCIDKANPKLGNVVKLLLEEQNGEGTFRKEASEL 548

Query: 561 IKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSL 620
                 D ++ +CNCLID+C N NL E+A EL  LG    +Y  + +K+  +WSL ++SL
Sbjct: 549 FDSISADVKKAYCNCLIDLCVNLNLLEKACELFDLGLTLEIYIDIQSKSPTQWSLHLKSL 608

Query: 621 SVGAAQTALEEWMWTLAKIVLREEVLPQLFLAETGTGTHKFS-QGLATAFASHVNKLAAP 679
           S+GAA TAL  WM  L+K V   E LP +    TG G HK+S +GLA+ F SH+ +L AP
Sbjct: 609 SLGAALTALHIWMNDLSKAVEVGEELPAVLGINTGHGKHKYSDKGLASVFESHLKELNAP 668

Query: 680 FRQSEGKAGCFVATREDLVSWVQARPS 706
           F ++  K G F+ T+    SW+++R +
Sbjct: 669 FHEAPDKVGWFLTTKVAATSWLESRSA 695


>gi|147841962|emb|CAN63129.1| hypothetical protein VITISV_001456 [Vitis vinifera]
          Length = 701

 Score =  487 bits (1253), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 250/627 (39%), Positives = 382/627 (60%), Gaps = 9/627 (1%)

Query: 81  NDRTPLLSKPKSTWVNPTKPRRSVLSLQRQKRSTYSYNPRVRDLKLFARKLNDCDNTEEA 140
           N + P        WVNP  PR S L   RQ    +SY+ R   L   A  L+ C+ TEE 
Sbjct: 77  NSQDPDRKTKSYIWVNPRSPRASKL---RQ----HSYDARYASLVKIAESLDSCEATEED 129

Query: 141 FLRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFG 200
             + +  +  +   ++A+++LN++   + +   F + + +     E I YNVT+K  R  
Sbjct: 130 VSQVLRCLGDKILEQDAVIVLNNMTNPETALLAFGFFRKRLKPSREVILYNVTLKVFRKC 189

Query: 201 RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTY 260
           R     E+L +EM+   ++ DNIT+STII+CA+  +L ++A+EWFE+M + G  PD+VTY
Sbjct: 190 RNLDXAEKLFDEMLERGVKPDNITFSTIISCARVSSLPNKAVEWFEKMPEFGCHPDDVTY 249

Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
           SA++D Y ++G V+  L LY+R     W+ DP+ FS L +++G SG++DG   V +EMK+
Sbjct: 250 SAMIDAYGRAGNVDMALKLYDRARTEKWRIDPVTFSTLIRIYGMSGNFDGCLNVYEEMKA 309

Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380
           LGV+PNLV+YNTLL+AMG+A +P  A++++ EM  +GL     T  AL++ YG+AR+A+D
Sbjct: 310 LGVKPNLVIYNTLLDAMGRAKRPWQAKNIYKEMTNNGLQLSWGTYAALLRAYGRARYAED 369

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
           AL +++ M+E    +  +LYNTLL MCAD+G  EEA  +FEDMK S  C PD++++++++
Sbjct: 370 ALIVYKEMKEKGLELSVVLYNTLLAMCADVGYTEEAAAIFEDMKSSGNCMPDSWTFSSLI 429

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
            IY   G V  A  +   M E G   N+   T LIQC GKA R D++VR F   ++  + 
Sbjct: 430 TIYSCSGKVSEAEAMLNAMLEAGFEPNIFVLTSLIQCYGKANRTDEVVRTFDRLLELDIT 489

Query: 501 PDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNV 560
           PDDR CGC+L+V++     E++GK+I C+ +ANPKL   + L+ +   G    ++E   +
Sbjct: 490 PDDRFCGCMLNVMTQ-SPKEELGKLIDCIDKANPKLGNVVKLLLEEQNGEGTFRKEASEL 548

Query: 561 IKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSL 620
                 D  + +CNCLID+C N NL E+A EL  LG    +Y  + +K+  +WSL ++SL
Sbjct: 549 FDSISADVXKAYCNCLIDLCVNLNLLEKACELFDLGLTLEIYIDIQSKSPTQWSLHLKSL 608

Query: 621 SVGAAQTALEEWMWTLAKIVLREEVLPQLFLAETGTGTHKFS-QGLATAFASHVNKLAAP 679
           S+GAA TAL  WM  L+K V   E LP +    TG G HK+S +GLA+ F SH+ +L AP
Sbjct: 609 SLGAALTALHIWMNDLSKAVEVGEELPAVLGINTGHGKHKYSDKGLASVFESHLKELNAP 668

Query: 680 FRQSEGKAGCFVATREDLVSWVQARPS 706
           F ++  K   F+ T+    SW+++R +
Sbjct: 669 FHEAPDKVXWFLTTKVAATSWLESRSA 695


>gi|224137224|ref|XP_002322504.1| predicted protein [Populus trichocarpa]
 gi|222867134|gb|EEF04265.1| predicted protein [Populus trichocarpa]
          Length = 647

 Score =  486 bits (1250), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 251/644 (38%), Positives = 397/644 (61%), Gaps = 11/644 (1%)

Query: 62  LSLSEQLKPLSSTTLSPTKNDRTPLLSKPKSTWVNPTKPRRSVLSLQRQKRSTYSYNPRV 121
           +SL +Q  P   T+     N++    SK    WVNP   + S L     ++S  SY+ R 
Sbjct: 6   VSLQDQKIPQQETSKDSNFNEKNGSSSKS-YIWVNPKSSKASTL-----RKS--SYDARY 57

Query: 122 RDLKLFARKLNDCDNTEEAFLRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQN 181
             L   A+ LN C+  ++     + E  ++    +A++ILN++     +     + + + 
Sbjct: 58  ASLIKAAKSLNSCNPNKDDVFNILGEFGNKLFEHDAVVILNNMSNPDTALLALKFFRERL 117

Query: 182 LFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEA 241
            F  E + YNVTMK LR  R    +E+L +EM+   ++ DN+T+STII+CA+ CNL D+A
Sbjct: 118 EFNREVVVYNVTMKVLRKCRDLNKVEKLFDEMIERAVKPDNVTFSTIISCARLCNLADKA 177

Query: 242 IEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKM 301
           +EWFE+M   GL PD+VT+S ++D Y + G VE+ LSLY+R     W+ D   FS L ++
Sbjct: 178 VEWFEKMPSFGLDPDDVTFSTMIDSYGRVGNVEKALSLYDRARTEKWRLDTTTFSTLIRI 237

Query: 302 FGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD 361
           + +SG++D    V +EMK+LGV+PNLV+YNTLL+AMG+A +P  A+  + ++++SGL+P 
Sbjct: 238 YKDSGNFDCCLNVYEEMKALGVKPNLVIYNTLLDAMGRARRPWQAKKFYQDIIDSGLSPS 297

Query: 362 EKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFE 421
             T  AL++ YG+AR+ +D +++++ M+E +  ++ +LYNT+L MCAD+G V+EA  +FE
Sbjct: 298 YATYAALLRAYGRARYGEDTIKIYKEMKEKELSLNVLLYNTILAMCADLGFVDEAIEIFE 357

Query: 422 DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
           DMK S    PD++++++M+ +    G V  A  +  EM E G   N+   T LIQC GKA
Sbjct: 358 DMKNSG-ISPDSWTFSSMITMSSCCGKVSEAENMLNEMFEAGFQPNIFVLTSLIQCYGKA 416

Query: 482 RRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLN 541
           +RIDD+V+ F    +  + PDDR CGCLL+V++    +E++GK++ C+++ANPKL   + 
Sbjct: 417 QRIDDVVKTFNRLYELLITPDDRFCGCLLNVMTQT-PNEELGKLVDCVERANPKLGHVVK 475

Query: 542 LIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLYGL 601
           L+ +      N K+E  ++  +   + ++ +CNCLID+C   N+ ERA ELL  G   G+
Sbjct: 476 LLVEEQGNEGNFKKEAADLFDNISTEVKKAYCNCLIDLCVKLNMLERACELLDHGLTLGI 535

Query: 602 YPGLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQLFLAETGTGTHKF 661
           Y  + +KT  +WSL+++SLS GAA TAL  W+  L+K +   E LP L    TG G HK+
Sbjct: 536 YTDIQSKTSTQWSLNLKSLSSGAALTALHVWINDLSKALEAGEQLPPLLGINTGHGKHKY 595

Query: 662 SQ-GLATAFASHVNKLAAPFRQSEGKAGCFVATREDLVSWVQAR 704
           S+ GLA  F SH+ +L APF ++  K G F+ T+    SW+++R
Sbjct: 596 SEKGLANVFESHLKELNAPFHEAPDKVGWFLTTKVAAESWLESR 639


>gi|449443502|ref|XP_004139516.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic-like [Cucumis sativus]
 gi|449492820|ref|XP_004159111.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic-like [Cucumis sativus]
          Length = 704

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 245/615 (39%), Positives = 373/615 (60%), Gaps = 9/615 (1%)

Query: 93  TWVNPTKPRRSVLSLQRQKRSTYSYNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQP 152
            WVNP  PR S L  Q       SY  R   L   +  L+  +  E      +  I +  
Sbjct: 92  VWVNPRSPRASKLRKQ-------SYEARYASLIRVSESLDSSNPCEVDVADVLKVIGNNI 144

Query: 153 TRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANE 212
              +A+L+LN++   Q +     + +       +TIFYNVT+K  R  R  +  E+L  E
Sbjct: 145 LERDAILVLNNMSNSQTALLALRYFQDMLKSSKQTIFYNVTLKVFRKCRDMEGAEKLFEE 204

Query: 213 MVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK 272
           M++  ++ DN+T+STII+CA+ C+L  +A+EWFE+M      PD+VTYS ++D Y ++G 
Sbjct: 205 MINRGVKPDNVTFSTIISCARLCSLPSKAVEWFEKMPSFDCNPDDVTYSTMIDAYGRAGN 264

Query: 273 VEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNT 332
           V+   SLY+R     W+ DP  FS + K+ G +G+YDG   V +EMK++G++PNLV+YN 
Sbjct: 265 VDMAFSLYDRARTENWRIDPATFSTMIKIHGVAGNYDGCLNVYEEMKAIGIKPNLVIYNC 324

Query: 333 LLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENK 392
           LL+AMG+A +P   ++++ EM+++G +P   T  +L++ YG+AR+ +DAL +++ M+E  
Sbjct: 325 LLDAMGRAKRPWQIKTIYKEMIKNGFSPSWATYASLLRAYGRARYGEDALIVYKEMKEKG 384

Query: 393 WPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNA 452
             ++ ILYNTLL MCAD+G V EA  +F+DMK S  C PD++++++M+ IY  GG V  A
Sbjct: 385 LQLNVILYNTLLAMCADVGYVNEAVEIFQDMKSSGTCSPDSWTFSSMITIYSCGGKVSEA 444

Query: 453 IELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSV 512
            E+  +M E G   N+   T LIQC GKA+R+DD+VR F   I+ G+ PDDR CGCLL+V
Sbjct: 445 EEMLNDMVEAGFDPNIFVLTSLIQCYGKAKRVDDVVRTFNQLIELGLTPDDRFCGCLLNV 504

Query: 513 VSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPF 572
           ++     E +GK+I C+ +ANPKL   + L+        N + E   +      D R+ +
Sbjct: 505 ITQTPKGE-LGKLIDCVVRANPKLGFVVELLLGEQDKEGNFRTEASELFSVVSADVRKAY 563

Query: 573 CNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALEEW 632
           CNCLID+C N +L ++A ELL LG    +Y  L +++  +WSL ++ LS+GAA TAL  W
Sbjct: 564 CNCLIDLCVNLDLLDKACELLDLGLTLQIYKDLQSRSPTQWSLYLKGLSLGAALTALHVW 623

Query: 633 MWTLAKIVLREEVLPQLFLAETGTGTHKFS-QGLATAFASHVNKLAAPFRQSEGKAGCFV 691
           +  L K++   E LP L    TG G HK+S +GLA+ F SH+ +L APF ++  K G F+
Sbjct: 624 IKDLTKVLESGEELPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHEAPEKVGWFL 683

Query: 692 ATREDLVSWVQARPS 706
            T+    SW+++R S
Sbjct: 684 TTKVAAKSWLESRSS 698


>gi|9755886|emb|CAC01940.1| 67kD chloroplastic RNA-binding protein, P67.1 [Raphanus sativus]
          Length = 700

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 262/688 (38%), Positives = 399/688 (57%), Gaps = 23/688 (3%)

Query: 34  HPIKINISCNSKSSENVAAESPNP-----------ETKTLSLSEQLKPLSSTTLSPTKND 82
           +P+   +S + KS+      S NP           +T  +SL E L P  +    P    
Sbjct: 17  YPLCNLLSVHHKSTPRSFVSSYNPNSPPFHSRTLLQTSHVSLQEPL-PQETQIEKPELEA 75

Query: 83  RTPLLSKPKSTWVNPTKPRRSVLSLQRQKRSTYSYNPRVRDLKLFARKLNDCDNTEEAFL 142
             P     +  WVNP  PR S L   R+K    SY+ R   L   A  L+ C   E    
Sbjct: 76  NPPASGSKRYAWVNPKSPRASQL---RRK----SYDSRYSSLVKLAESLDSCPANEADVS 128

Query: 143 RAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQ 202
             I +   +   ++A++ LN++   + +    N +        E I YNVTMK  R  + 
Sbjct: 129 DVIAKFGSKLFEQDAVVTLNNMTNPETAPLVLNNLLETLKPTREVILYNVTMKVFRKSKD 188

Query: 203 FQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSA 262
            +  E+L +EM+   ++ DN T++T+I+CA++C L   A+EWFE+M   GL PD VT +A
Sbjct: 189 LEKSEKLFDEMLQRGVKPDNATFTTLISCARQCGLPKRAVEWFEKMPSFGLEPDNVTLAA 248

Query: 263 ILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG 322
           ++D Y ++G VE  LSLY+R     W+ DP+ FS L +++G +G+YDG   + +EMKSLG
Sbjct: 249 MIDAYGRAGNVEMALSLYDRARTEKWRIDPVTFSTLIRIYGYAGNYDGCLNIYEEMKSLG 308

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382
           V+PNLV+YN LL++MGKA +P  A  +  +++ +G  P+  T  ALI+ YG+AR+ +DAL
Sbjct: 309 VKPNLVIYNRLLDSMGKAKRPWQATMIHKDLISNGFEPNWSTYAALIRAYGRARYGEDAL 368

Query: 383 ELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNI 442
            ++ +M+     +  ILYNTLL+MCADIG V+EA  +F+DMK S  C+PD++++++++ +
Sbjct: 369 VIYRQMKGKGLELTVILYNTLLSMCADIGYVDEAFEIFQDMKSSGTCEPDSWTFSSLITV 428

Query: 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           Y   G V  A     EM E G    +   T LIQC GKA+++DD+VR F   ++ G++PD
Sbjct: 429 YSCCGRVSEAEAALREMREAGFEPTLFVLTSLIQCYGKAKQVDDVVRTFEQVLELGIEPD 488

Query: 503 DRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENI-KEEFRNVI 561
           DR CGCLL+V++   T E++GK+I C+++A PKL   + ++ +     E + K+E   +I
Sbjct: 489 DRFCGCLLNVMTQTPT-EEIGKLIECVEKAKPKLGRVVKMLVEEENCEEGVLKKEASELI 547

Query: 562 KDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLS 621
                D  + + NCLID+C N N  E+A E+L LG  Y +Y GL +K+  +WSL ++SLS
Sbjct: 548 DSIGSDVNKAYLNCLIDLCVNLNKLEKACEILQLGLEYDIYSGLQSKSATQWSLHLKSLS 607

Query: 622 VGAAQTALEEWMWTLAKIVLRE-EVLPQLFLAETGTGTHKFS-QGLATAFASHVNKLAAP 679
           +GAA TAL  WM  L++  L   E  P L    TG G HK+S +GLA  F SH+ +L AP
Sbjct: 608 LGAALTALHVWMNDLSEAALTSGEEFPPLLGINTGHGKHKYSDKGLAAVFESHLKELNAP 667

Query: 680 FRQSEGKAGCFVATREDLVSWVQARPSS 707
           F ++  K G F+ T     +W+++R SS
Sbjct: 668 FHEAPDKVGWFLTTSVAAKTWLESRRSS 695


>gi|357480587|ref|XP_003610579.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511634|gb|AES92776.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 706

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 243/621 (39%), Positives = 378/621 (60%), Gaps = 9/621 (1%)

Query: 88  SKPKSTWVNPTKPRRSVLSLQRQKRSTYSYNPRVRDLKLFARKLNDCDNTEEAFLRAITE 147
           SK    WVNP  PR   L  +       SY+ R   L   +  L+ C+ TE    + +  
Sbjct: 89  SKSSYIWVNPKSPRAKQLGKK-------SYDARYSSLVKLSNALDSCEPTEHDVSQILKC 141

Query: 148 IPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIE 207
           +  +   ++A++I+N+++      F   +++ +++   E I YNVT+K  R  +     E
Sbjct: 142 LGDKVIEQDAVIIINNMENSVVVPFVLQYVQRKSIPTREVILYNVTLKVFRKCKDLDGAE 201

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           ++  EM+   ++ DN+T+STII+CA+ C L D+A+EWFE+M   G  PD+VTYS ++D Y
Sbjct: 202 KVFGEMLQRGVKPDNVTFSTIISCARSCYLPDKAVEWFEKMPLFGCEPDDVTYSVMIDSY 261

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            K+G ++  L+LY+R     W+ +P  FS L KM+G +G+YDG   V +EMK+LGV+PNL
Sbjct: 262 GKAGDIDMALNLYDRARTEKWRIEPATFSTLIKMYGVAGNYDGCLNVYEEMKALGVKPNL 321

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
           VVYNTLL+AMG+A +P  AR+++ EM+ + + P+  T  +L+  YG+AR+ +DAL ++  
Sbjct: 322 VVYNTLLDAMGRAKRPWQARTIYKEMINNDILPNRATYASLLHAYGRARFCEDALVVYRE 381

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           MRE +  ++  LYN+LL MCAD+G  + A  +FEDMK SD C PD++++++++ IY   G
Sbjct: 382 MREKEMDLNTHLYNSLLAMCADVGYTDLAFEIFEDMKSSDTCSPDSWTFSSLITIYSCSG 441

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCG 507
            V  A  +  EM E G    +   T L+QC GKA+R DD+V+ F   +D G++PDDR CG
Sbjct: 442 RVSEAERMMNEMIESGFEPTIFVLTSLVQCYGKAKRTDDVVKTFNQLLDMGIEPDDRFCG 501

Query: 508 CLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVD 567
           CLL+V++     E++GK+I C+++ANPKL   +  + +   G    ++E   +       
Sbjct: 502 CLLNVMTQT-PKEELGKLIDCVEKANPKLSFVVRYLVEGLEGDGEFRKEALELFSSITDG 560

Query: 568 ARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQT 627
            +R FCN LID+C N +L +RA  LL LG    +Y  + +++  +WSL +R LSVGA+ T
Sbjct: 561 VKRAFCNSLIDLCINLDLLDRARVLLDLGLTLEIYTDIQSRSQTQWSLILRGLSVGASLT 620

Query: 628 ALEEWMWTLAKIVLREEVLPQLFLAETGTGTHKFS-QGLATAFASHVNKLAAPFRQSEGK 686
           A   W+  L+K     E LP L    TG G H++S +GLA    SH+ +L APFR+S  K
Sbjct: 621 AFHVWINDLSKAFESGEDLPPLLGIHTGHGKHRYSDKGLAGVIESHMKELDAPFRESPDK 680

Query: 687 AGCFVATREDLVSWVQARPSS 707
           AG F+ T+  + SW+++R SS
Sbjct: 681 AGWFLTTQVAVKSWMESRGSS 701


>gi|356522073|ref|XP_003529674.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic-like [Glycine max]
          Length = 685

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 253/667 (37%), Positives = 398/667 (59%), Gaps = 29/667 (4%)

Query: 49  NVAAESPNPETKTL---------SLSEQLKPLSSTTLSPTKNDRTPLLSKPKSTWVNPTK 99
           N+++ S  P +KTL          + E L P + ++ S   N            WVNP  
Sbjct: 32  NLSSSSLTPHSKTLLHVSLHEHEPIPEHLPPDAKSSSSSKSN----------YIWVNPRS 81

Query: 100 PRRSVLSLQRQKRSTYSYNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTRENALL 159
           PR   L        + SY+ R   L   A  L+ C+ ++E     + ++  +   ++A++
Sbjct: 82  PRAKQLE-------SRSYDARYTSLVNLAHSLDSCNPSQEDVSLVLKDLGDRVIEQDAVI 134

Query: 160 ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIE 219
           ++N++   +   F  N+ + +     E I YNVT+K  R  +    +E+L +EM+   + 
Sbjct: 135 VINNMSNSRVVPFVLNYFQRRIRPTREVILYNVTLKVFRKSKDLDAMEKLFDEMLQRGVR 194

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
            DN+T+STII+CA+ C+L ++A+EWFE+M   G  PD+VTYSA++D Y ++G ++  L L
Sbjct: 195 PDNVTFSTIISCARICSLPNKAVEWFEKMSSFGCEPDDVTYSAMIDAYGRAGNIDMALRL 254

Query: 280 YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
           Y+R     W+ D + FS L KM+G +G+YDG   V QEMK LGV+PN+V+YNTLL+AMG+
Sbjct: 255 YDRARTEKWRLDTVTFSTLIKMYGLAGNYDGCLNVYQEMKVLGVKPNMVIYNTLLDAMGR 314

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
           A +P  A+S++ EM  +G +P+  T  +L++ YG+ R+++DAL +++ M+E    M+  L
Sbjct: 315 AKRPWQAKSIYTEMTNNGFSPNWVTYASLLRAYGRGRYSEDALFVYKEMKEKGMEMNTHL 374

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           YNTLL MCAD+GL  EA  +FEDMK S  C  D++++++++ IY   GNV  A  +  EM
Sbjct: 375 YNTLLAMCADLGLANEAFEIFEDMKTSATCLCDSWTFSSLITIYSCTGNVSEAERMLNEM 434

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETS 519
            E G    +   T L+QC GK  R DD+V+ F   +D G+ PDDR CGCLL+V++     
Sbjct: 435 IESGSQPTIFVLTSLVQCYGKVGRTDDVVKTFNQLLDLGISPDDRFCGCLLNVMTQ-TPK 493

Query: 520 EDVGKVITCLQQANPKLVAFLN-LIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLID 578
           E++GK+  C+++ANPKL + +  L+E    G    K+E   +      + ++PFCN LID
Sbjct: 494 EELGKLNDCVKKANPKLGSVVRYLVEGLEEGGGEFKKEASELFNSIADEVKKPFCNSLID 553

Query: 579 ICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAK 638
           +C N NL ++A ELL LG    +Y  + +K+  +WSL ++SLS+GA+ TAL  W+  L+K
Sbjct: 554 LCVNLNLLDKACELLDLGLTLEIYTDVQSKSQTQWSLHLKSLSLGASLTALHAWINDLSK 613

Query: 639 IVLREEVLPQLFLAETGTGTHKFS-QGLATAFASHVNKLAAPFRQSEGKAGCFVATREDL 697
            +   E LP L    TG G H++S +GLA+   SH+N+L APF ++  KAG F+ T+   
Sbjct: 614 TLESGEDLPPLLGINTGHGKHRYSDKGLASVVESHLNELNAPFHEAPDKAGWFLTTQVAA 673

Query: 698 VSWVQAR 704
            SW+++R
Sbjct: 674 KSWLESR 680


>gi|9755888|emb|CAC01941.1| RSP67.2 [Raphanus sativus]
          Length = 700

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 260/688 (37%), Positives = 400/688 (58%), Gaps = 23/688 (3%)

Query: 34  HPIKINISCNSKSSENVAAESPNP-----------ETKTLSLSEQLKPLSSTTLSPTKND 82
           +P+   +S + KS+      S NP           +T+ +SL E L P  +    P  + 
Sbjct: 17  YPLCNLLSVHHKSTPRSFVSSYNPNSPPFHSRTLLQTRHVSLQEPL-PQETQIEKPELDA 75

Query: 83  RTPLLSKPKSTWVNPTKPRRSVLSLQRQKRSTYSYNPRVRDLKLFARKLNDCDNTEEAFL 142
             P     +  WVNP  PR S L   R+K    SY+ R   L   A  L+ C   E    
Sbjct: 76  NPPASGSKRYAWVNPKSPRASQL---RRK----SYDSRYSSLVKLAESLDSCPPNEADVS 128

Query: 143 RAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQ 202
             I +   +   ++A++ LN++   + +    N +        E I YNVTMK  R  + 
Sbjct: 129 DVIAKFGSKLFEQDAVVALNNMTNPETAPLVLNNLLETLKPTREVILYNVTMKVFRKSKD 188

Query: 203 FQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSA 262
            +  E+L +EM+   ++ DN T++T+I+CA++C L + A+EWFE+M   GL PD VT +A
Sbjct: 189 LEKSEKLFDEMLQRGVKPDNATFTTLISCARQCGLPNRAVEWFEKMPSFGLEPDNVTLAA 248

Query: 263 ILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG 322
           ++D Y ++G VE  LSLY+R     W+ DP+ FS L +++G +G+YDG   + +EMKSLG
Sbjct: 249 MIDAYGRAGNVEMALSLYDRARTEKWRIDPVTFSTLIRIYGYAGNYDGCLNIYEEMKSLG 308

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382
           V+PNLV+YN LL++MGKA +P  A  +  +++ +G  P+  T  ALI+ YG+AR+ +DAL
Sbjct: 309 VKPNLVIYNRLLDSMGKAKRPWQATMIHKDLISNGFEPNWSTYAALIRAYGRARYGEDAL 368

Query: 383 ELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNI 442
            ++ +M+     +  +LYNTLL+MCADIG V+EA  +F+DMK S  C+PD++++++++ +
Sbjct: 369 VIYRQMKGKGMELTVLLYNTLLSMCADIGYVDEAFEIFQDMKSSGTCEPDSWTFSSLITV 428

Query: 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           Y   G V  A     EM E G    +   T LIQC GKA+++DD+VR F   ++ G++PD
Sbjct: 429 YSCCGRVSEAEAALREMREAGFEPTLFVLTSLIQCYGKAKQVDDVVRTFEQVLELGIEPD 488

Query: 503 DRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENI-KEEFRNVI 561
           DR CGCLL+V++     E++GK+I C+++A PKL     ++ +     E + K+E   +I
Sbjct: 489 DRFCGCLLNVMTQT-PKEEIGKLIGCVEKAKPKLGRVEKMLVEEENCEEGVLKKEASELI 547

Query: 562 KDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLS 621
                D  + + NCLID+C N N  E+A E+L LG  Y +Y GL +K+  +WSL ++SLS
Sbjct: 548 DSIGSDVNKAYLNCLIDLCVNLNKLEKACEILQLGLEYDIYSGLQSKSDTQWSLHLKSLS 607

Query: 622 VGAAQTALEEWMWTLAKIVLRE-EVLPQLFLAETGTGTHKFS-QGLATAFASHVNKLAAP 679
           +GAA TAL  WM  L++  L   E  P L    TG G HK+S +GLA  F SH+ +L AP
Sbjct: 608 LGAALTALHVWMNDLSEAALTSGEEFPPLLGINTGHGKHKYSDKGLAAVFESHLKELNAP 667

Query: 680 FRQSEGKAGCFVATREDLVSWVQARPSS 707
           F ++  K G F+ T     +W+++R SS
Sbjct: 668 FHEAPDKVGWFLTTSVAAKTWLESRRSS 695


>gi|224089803|ref|XP_002308816.1| predicted protein [Populus trichocarpa]
 gi|222854792|gb|EEE92339.1| predicted protein [Populus trichocarpa]
          Length = 700

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 245/647 (37%), Positives = 391/647 (60%), Gaps = 11/647 (1%)

Query: 62  LSLSEQLKPLSSTTLSPTKNDRTPLLSKPKSTWVNPTKPRRSVLSLQRQKRSTYSYNPRV 121
           +SL ++  P   T+      ++T   SK    WVNP   R S+L     ++S  SY+ + 
Sbjct: 59  VSLQDEELPRQETSKDSNFKEKTGSSSK-SYIWVNPKSSRASIL-----RKS--SYDAKY 110

Query: 122 RDLKLFARKLNDCDNTEEAFLRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQN 181
             L   A+ LN C   ++     +++   +   ++A++ILN++     +     + + + 
Sbjct: 111 TSLVNAAKYLNSCSPNKDDVFNVLSKFDGKLLEQDAVVILNNMSNPDTALLALKFFQERL 170

Query: 182 LFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEA 241
            F  E + YNVT+K  R GR     E+L +EM+   ++ DN T+STII+CA+ CNL D+A
Sbjct: 171 KFNREVVVYNVTLKVFRKGRDLDKAEKLFDEMLERGVKPDNFTFSTIISCARLCNLADKA 230

Query: 242 IEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKM 301
           +EWFE+M   GL PD+VT S ++D Y ++G VE+ LSLY+R     W+ D  AFS L ++
Sbjct: 231 VEWFEKMPSFGLEPDDVTLSTMIDSYGRAGNVEKALSLYDRARTGEWRLDATAFSTLIRI 290

Query: 302 FGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD 361
           +  +G++DG   V +EMK+LGV+PNLV+YN LL+AMG+A +P   +  + +++++GL+P 
Sbjct: 291 YKVAGNFDGCLNVYEEMKALGVKPNLVIYNILLDAMGRAKRPWQVKKFYQDIIDNGLSPS 350

Query: 362 EKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFE 421
             T  AL+  YG+AR+ +DA +++  M+E    ++ +LYN++L MCAD+G V++A  +FE
Sbjct: 351 FVTYAALLHAYGRARYGEDAFKIYREMKEKGLGLNVVLYNSILAMCADLGHVDKAVEIFE 410

Query: 422 DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
           DMK S   KPD++++++M+ I+   G V  A     EM E G   N+   T LIQC GKA
Sbjct: 411 DMK-SSGIKPDSWTFSSMITIFSCCGKVSEAENTLNEMFEAGFQPNIFILTSLIQCYGKA 469

Query: 482 RRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLN 541
           +RIDD+V  F    +  + PDDR CGCLL+V++    +E++ K++ C ++ANPKL   + 
Sbjct: 470 QRIDDVVNTFNRIFELVITPDDRFCGCLLNVMTQT-PNEELSKLVKCAERANPKLGYVVK 528

Query: 542 LIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLYGL 601
           L+ +      N K E  ++      + ++ +CNCLID+C   N+ ERA ELL LG    +
Sbjct: 529 LLVEEQDSEGNFKNEATDLFDSISTEVKKAYCNCLIDLCIKLNMLERACELLDLGLTLEI 588

Query: 602 YPGLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQLFLAETGTGTHKF 661
           Y  + ++T  +WSL+++SLS GAA TAL  WM  L+K++   E LP L    TG G HK+
Sbjct: 589 YTNIMSRTSTQWSLNLKSLSPGAAMTALHIWMNDLSKVLEAGEQLPPLLGINTGHGKHKY 648

Query: 662 SQ-GLATAFASHVNKLAAPFRQSEGKAGCFVATREDLVSWVQARPSS 707
           S+ GLA  F S++ +L +PF ++  K G F+ T+    SW+++R S+
Sbjct: 649 SEKGLANVFESYLKELNSPFHEAPDKVGWFLTTKVAAESWLESRKST 695


>gi|297804554|ref|XP_002870161.1| hypothetical protein ARALYDRAFT_915114 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315997|gb|EFH46420.1| hypothetical protein ARALYDRAFT_915114 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 702

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 245/629 (38%), Positives = 377/629 (59%), Gaps = 14/629 (2%)

Query: 85  PLLSKPKS---TWVNPTKPRRSVLSLQRQKRSTYSYNPRVRDLKLFARKLNDCDNTEEAF 141
           PL   P S    WVNP  PR S L   R+K    SY+ R   L   A  L+ C   E   
Sbjct: 77  PLPDPPASKSYVWVNPKSPRASQL---RRK----SYDSRYSSLIKLAESLDSCKPNEADV 129

Query: 142 LRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGR 201
              IT    +   ++A++ LN++   + +    N +        E I YNVT+K  R  +
Sbjct: 130 CDVITGFGGKLFEQDAVVTLNNMTNPETAPIVLNNLLETMKPSREVILYNVTLKVFRKSK 189

Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS 261
             +  E+L +EM+   ++ DN T++TII+CA++  +   A+EWFE+M   G  PD VT +
Sbjct: 190 NLEKSEKLFDEMLERGVKPDNATFTTIISCARQSGVPKRAVEWFEKMSSFGCEPDNVTLA 249

Query: 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
           A++D Y ++G VE  LSLY+R     W+ D + FS L +++G SG+YDG   + +EMK+L
Sbjct: 250 AMIDAYGRAGNVEMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKAL 309

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
           GV+PNLV+YN LL++MG+A +P  A+ +  +++ +G TP+  T  ALI+ YG+AR+  DA
Sbjct: 310 GVKPNLVIYNRLLDSMGRAKRPWQAKIIHKDLISNGFTPNWSTYAALIRAYGRARYGDDA 369

Query: 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
           L ++  M+E    +  ILYNTLL+MCADIG V+EA  +F+DMK  + C PD++++++++ 
Sbjct: 370 LVIYREMKEKGLSLTVILYNTLLSMCADIGYVDEAFEIFQDMKNCETCDPDSWTFSSLIT 429

Query: 442 IYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
           +Y   G V  A     +M E G    +   T +IQC GKA+++DD+VR F   ++ G+ P
Sbjct: 430 VYSCSGRVSEAEAALLQMREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITP 489

Query: 502 DDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENI-KEEFRNV 560
           DDR CGCLL+V++    SE++GK+I C+++A P+ +  + ++ +   G E + K+E   +
Sbjct: 490 DDRFCGCLLNVMTQ-TPSEEIGKLIGCVEKAKPQNIGQVKMLVEEQNGEEGVFKKETSEL 548

Query: 561 IKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSL 620
           I     D ++ + NCLID+C N N  ERA E+L LG  Y +Y GL +K+  +WSL ++SL
Sbjct: 549 IDSIGSDVKKAYLNCLIDLCVNLNKLERACEILQLGLEYDIYTGLQSKSATQWSLHLKSL 608

Query: 621 SVGAAQTALEEWMWTLAKIVLRE-EVLPQLFLAETGTGTHKFS-QGLATAFASHVNKLAA 678
           S+GAA TAL  W+  L++  L   E  P L    TG G HK+S +GLA  F SH+ +L A
Sbjct: 609 SLGAALTALHVWINDLSEAALESGEEFPPLLGINTGHGKHKYSDKGLAAVFESHLKELNA 668

Query: 679 PFRQSEGKAGCFVATREDLVSWVQARPSS 707
           PF ++  K G F+ T     +W+++R SS
Sbjct: 669 PFHEAPDKVGWFLTTSVAAKAWLESRRSS 697


>gi|356562139|ref|XP_003549331.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic-like [Glycine max]
          Length = 689

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 238/613 (38%), Positives = 381/613 (62%), Gaps = 10/613 (1%)

Query: 94  WVNPTKPRRSVLSLQRQKRSTYSYNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQPT 153
           WVNP  PR    + Q ++RS   Y+ R   L   A  L+ C+ ++E     + ++  +  
Sbjct: 80  WVNPRSPR----AKQLERRS---YDARYTSLVNLALSLDSCNPSQEDVSLVLKDLWGRVI 132

Query: 154 RENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEM 213
            ++A++++N++   +   F  N+ + +     E I YNVT+K  R  +    +E+L +EM
Sbjct: 133 EQDAVIVINNMSNPRVVPFVLNYFQRRIRPTREVILYNVTLKVFRKSKDLDAMEKLFDEM 192

Query: 214 VSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKV 273
           +   +  DN+++STII+CA+ C+L ++A+EWFE+M      PD+VTYSA++D Y ++G +
Sbjct: 193 LQRGVRPDNVSFSTIISCARICSLPNKAVEWFEKMPSFRCEPDDVTYSAMIDAYGRAGNI 252

Query: 274 EEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTL 333
           +  L LY+R     W+ D + FS L KM+G +G+YDG   V QEMK+LGV+ N+V+YNTL
Sbjct: 253 DMALRLYDRARTEKWRLDSVTFSTLIKMYGLAGNYDGCLNVYQEMKALGVKSNMVIYNTL 312

Query: 334 LEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKW 393
           L+AMG+A +P  A+S++ EM  +G  P+  T  +L++ YG+ R+++DAL +++ M+E   
Sbjct: 313 LDAMGRAKRPWQAKSIYTEMTNNGFLPNWATYASLLRAYGRGRYSEDALFVYKEMKEKGM 372

Query: 394 PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAI 453
            M+  LYNTLL MCAD+GL ++A ++FEDMK S  C  D++++++++ IY   GNV  A 
Sbjct: 373 EMNTHLYNTLLAMCADLGLADDAFKIFEDMKSSATCLCDSWTFSSLITIYSCSGNVSEAE 432

Query: 454 ELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVV 513
            +  EM E G    +   T L+QC GK  R DD+++ F   +D G+ PDDR CGCLL+V+
Sbjct: 433 RMLNEMIESGFQPTIFVLTSLVQCYGKVGRTDDVLKTFNQLLDLGISPDDRFCGCLLNVM 492

Query: 514 SLCETSEDVGKVITCLQQANPKLVAFLN-LIEDNSTGFENIKEEFRNVIKDTEVDARRPF 572
           +     E++GK+  C+++ANPKL + L  L+E    G    ++E   +      + ++PF
Sbjct: 493 TQ-TPKEELGKLNDCVEKANPKLGSVLRYLVEGLEEGDGEFRKEASELFNSIADEVKKPF 551

Query: 573 CNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALEEW 632
           CN LID+C N NL ++A ELL LG    +Y  + +K+  +WSL ++SLS+GA+ TAL  W
Sbjct: 552 CNSLIDLCVNLNLLDKACELLDLGLTLEIYTDIQSKSQTQWSLHLKSLSLGASLTALHAW 611

Query: 633 MWTLAKIVLREEVLPQLFLAETGTGTHKFS-QGLATAFASHVNKLAAPFRQSEGKAGCFV 691
           +  L+K +   E LP L    TG G H++S +GLA    SH+N+L APF ++  KAG F+
Sbjct: 612 INDLSKTLESGEDLPPLLGINTGHGKHRYSDKGLANVVESHLNELNAPFHEAPDKAGWFL 671

Query: 692 ATREDLVSWVQAR 704
            T+    SW+++R
Sbjct: 672 TTQVAAKSWLESR 684


>gi|26452823|dbj|BAC43491.1| putative salt-inducible protein [Arabidopsis thaliana]
          Length = 702

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 241/618 (38%), Positives = 373/618 (60%), Gaps = 11/618 (1%)

Query: 93  TWVNPTKPRRSVLSLQRQKRSTYSYNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQP 152
            WVNP  PR S L   R+K    SY+ R   L   A  L+ C   E      IT    + 
Sbjct: 88  VWVNPKSPRASQL---RRK----SYDSRYSSLIKLAESLDACKPNEADVCDVITGFGGKL 140

Query: 153 TRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANE 212
             ++A++ LN++   + +    N +        E I YNVTMK  R  +  +  E+L +E
Sbjct: 141 FEQDAVVTLNNMTNPETAPLVLNNLLETMKPSREVILYNVTMKVFRKSKDLEKSEKLFDE 200

Query: 213 MVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK 272
           M+   I+ DN T++TII+CA++  +   A+EWFE+M   G  PD VT +A++D Y ++G 
Sbjct: 201 MLERGIKPDNATFTTIISCARQNGVPKRAVEWFEKMSSFGCEPDNVTMAAMIDAYGRAGN 260

Query: 273 VEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNT 332
           V+  LSLY+R     W+ D + FS L +++G SG+YDG   + +EMK+LGV+PNLV+YN 
Sbjct: 261 VDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKALGVKPNLVIYNR 320

Query: 333 LLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENK 392
           L+++MG+A +P  A+ ++ +++ +G TP+  T  AL++ YG+AR+  DAL ++  M+E  
Sbjct: 321 LIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDALAIYREMKEKG 380

Query: 393 WPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNA 452
             +  ILYNTLL+MCADIG V+EA  +F+DMK  + C PD++++++++ +Y   G V  A
Sbjct: 381 LSLTVILYNTLLSMCADIGYVDEAFEIFQDMKNCETCDPDSWTFSSLITVYACSGRVSEA 440

Query: 453 IELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSV 512
                +M E G    +   T +IQC GKA+++DD+VR F   ++ G+ PDDR CGCLL+V
Sbjct: 441 EAALLQMREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITPDDRFCGCLLNV 500

Query: 513 VSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENI-KEEFRNVIKDTEVDARRP 571
           ++    SE++GK+I C+++A PKL   + ++ +     E + K+E   +I     D ++ 
Sbjct: 501 MTQ-TPSEEIGKLIGCVEKAKPKLGQVVKMLVEEQNCEEGVFKKEASELIDSIGSDVKKA 559

Query: 572 FCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALEE 631
           + NCLID+C N N  ERA E+L LG  Y +Y GL +K+  +WSL ++SLS+GAA TAL  
Sbjct: 560 YLNCLIDLCVNLNKLERACEILQLGLEYDIYTGLQSKSATQWSLHLKSLSLGAALTALHV 619

Query: 632 WMWTLAKIVLRE-EVLPQLFLAETGTGTHKFS-QGLATAFASHVNKLAAPFRQSEGKAGC 689
           WM  L++  L   E  P L    TG G HK+S +GLA  F SH+ +L APF ++  K G 
Sbjct: 620 WMNDLSEAALESGEEFPPLLGINTGHGKHKYSDKGLAAVFESHLKELNAPFHEAPDKVGW 679

Query: 690 FVATREDLVSWVQARPSS 707
           F+ T     +W+++R S+
Sbjct: 680 FLTTSVAAKAWLESRRSA 697


>gi|9755842|emb|CAC01928.1| 67kD chloroplastic RNA-binding protein, P67 [Arabidopsis thaliana]
          Length = 702

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 241/618 (38%), Positives = 372/618 (60%), Gaps = 11/618 (1%)

Query: 93  TWVNPTKPRRSVLSLQRQKRSTYSYNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQP 152
            WVNP  PR S L   R+K    SY+ R   L   A  L+ C   E      IT    + 
Sbjct: 88  VWVNPKSPRASQL---RRK----SYDSRYSSLIKLAESLDACKPNEADVCDVITGFGGKL 140

Query: 153 TRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANE 212
             ++A++ LN++   + +    N +        E I YNVTMK  R  +  +  E+L +E
Sbjct: 141 FEQDAVVTLNNMTNPETAPLVLNNLLETMKPSREVILYNVTMKVFRKSKDLEKSEKLFDE 200

Query: 213 MVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK 272
           M+   I+ DN T++TII+CA++  +   A+EWFE+M   G  PD VT +A++D Y ++G 
Sbjct: 201 MLERGIKPDNATFTTIISCARQNGVPKRAVEWFEKMSSFGCEPDNVTMAAMIDAYGRAGN 260

Query: 273 VEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNT 332
           V+  LSLY+R     W+ D + FS L +++G SG+YDG   + +EMK+LGV+PNLV+YN 
Sbjct: 261 VDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKALGVKPNLVIYNR 320

Query: 333 LLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENK 392
           L+++MG+A +P  A+ ++ +++ +G TP+  T  AL++ YG+AR+  DAL ++  M+E  
Sbjct: 321 LIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDALAIYREMKEKG 380

Query: 393 WPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNA 452
             +  ILYNTLL+MCADIG V+EA  +F+DMK  + C PD++++++++ +Y   G V  A
Sbjct: 381 LSLTVILYNTLLSMCADIGYVDEAFEIFQDMKNCETCDPDSWTFSSLITVYACSGRVSEA 440

Query: 453 IELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSV 512
                +M E G    +   T +IQC GKA+++DD+VR F   ++ G+ PDDR CGCLL+V
Sbjct: 441 EAALLQMREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITPDDRFCGCLLNV 500

Query: 513 VSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENI-KEEFRNVIKDTEVDARRP 571
           ++    SE++GK+I C+++A PKL   + ++ +     E + K+E   +I     D ++ 
Sbjct: 501 MTQ-TPSEEIGKLIGCVEKAKPKLGQVVKMLVEEQNCEEGVFKKEASELIDSIGSDVKKA 559

Query: 572 FCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALEE 631
           + NCLID+C N N  ERA E+L LG  Y +Y GL +K+  +WSL ++SLS+GAA TAL  
Sbjct: 560 YLNCLIDLCVNLNKLERACEILQLGLEYDIYTGLQSKSATQWSLHLKSLSLGAALTALHV 619

Query: 632 WMWTLAKIVLRE-EVLPQLFLAETGTGTHKFS-QGLATAFASHVNKLAAPFRQSEGKAGC 689
           WM  L++  L   E  P L    TG G HK+S +GLA  F SH+ +L APF ++  K G 
Sbjct: 620 WMNDLSEAALESGEEFPPLLGINTGHGKHKYSDKGLAAVFESHLKELNAPFHEAPDKVGW 679

Query: 690 FVATREDLVSWVQARPSS 707
           F+ T     +W++ R S+
Sbjct: 680 FLTTSVAAKAWLEFRRSA 697


>gi|240255936|ref|NP_193372.6| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|374095491|sp|Q8GWE0.3|PP314_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g16390, chloroplastic; AltName: Full=Chloroplastic
           RNA-binding protein P67; Flags: Precursor
 gi|332658341|gb|AEE83741.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 702

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 239/618 (38%), Positives = 371/618 (60%), Gaps = 11/618 (1%)

Query: 93  TWVNPTKPRRSVLSLQRQKRSTYSYNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQP 152
            WVNP  PR S L   R+K    SY+ R   L   A  L+ C   E      IT    + 
Sbjct: 88  VWVNPKSPRASQL---RRK----SYDSRYSSLIKLAESLDACKPNEADVCDVITGFGGKL 140

Query: 153 TRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANE 212
             ++A++ LN++   + +    N +        E I YNVTMK  R  +  +  E+L +E
Sbjct: 141 FEQDAVVTLNNMTNPETAPLVLNNLLETMKPSREVILYNVTMKVFRKSKDLEKSEKLFDE 200

Query: 213 MVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK 272
           M+   I+ DN T++TII+CA++  +   A+EWFE+M   G  PD VT +A++D Y ++G 
Sbjct: 201 MLERGIKPDNATFTTIISCARQNGVPKRAVEWFEKMSSFGCEPDNVTMAAMIDAYGRAGN 260

Query: 273 VEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNT 332
           V+  LSLY+R     W+ D + FS L +++G SG+YDG   + +EMK+LGV+PNLV+YN 
Sbjct: 261 VDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKALGVKPNLVIYNR 320

Query: 333 LLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENK 392
           L+++MG+A +P  A+ ++ +++ +G TP+  T  AL++ YG+AR+  DAL ++  M+E  
Sbjct: 321 LIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDALAIYREMKEKG 380

Query: 393 WPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNA 452
             +  ILYNTLL+MCAD   V+EA  +F+DMK  + C PD++++++++ +Y   G V  A
Sbjct: 381 LSLTVILYNTLLSMCADNRYVDEAFEIFQDMKNCETCDPDSWTFSSLITVYACSGRVSEA 440

Query: 453 IELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSV 512
                +M E G    +   T +IQC GKA+++DD+VR F   ++ G+ PDDR CGCLL+V
Sbjct: 441 EAALLQMREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITPDDRFCGCLLNV 500

Query: 513 VSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENI-KEEFRNVIKDTEVDARRP 571
           ++    SE++GK+I C+++A PKL   + ++ +     E + K+E   +I     D ++ 
Sbjct: 501 MTQ-TPSEEIGKLIGCVEKAKPKLGQVVKMLVEEQNCEEGVFKKEASELIDSIGSDVKKA 559

Query: 572 FCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALEE 631
           + NCLID+C N N  ERA E+L LG  Y +Y GL +K+  +WSL ++SLS+GAA TAL  
Sbjct: 560 YLNCLIDLCVNLNKLERACEILQLGLEYDIYTGLQSKSATQWSLHLKSLSLGAALTALHV 619

Query: 632 WMWTLAKIVLRE-EVLPQLFLAETGTGTHKFS-QGLATAFASHVNKLAAPFRQSEGKAGC 689
           WM  L++  L   E  P L    TG G HK+S +GLA  F SH+ +L APF ++  K G 
Sbjct: 620 WMNDLSEAALESGEEFPPLLGINTGHGKHKYSDKGLAAVFESHLKELNAPFHEAPDKVGW 679

Query: 690 FVATREDLVSWVQARPSS 707
           F+ T     +W+++R S+
Sbjct: 680 FLTTSVAAKAWLESRRSA 697


>gi|2244996|emb|CAB10416.1| salt-inducible protein homolog [Arabidopsis thaliana]
 gi|7268388|emb|CAB78681.1| salt-inducible protein homolog [Arabidopsis thaliana]
          Length = 777

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 238/617 (38%), Positives = 371/617 (60%), Gaps = 11/617 (1%)

Query: 94  WVNPTKPRRSVLSLQRQKRSTYSYNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQPT 153
           WVNP  PR S L   R+K    SY+ R   L   A  L+ C   E      IT    +  
Sbjct: 164 WVNPKSPRASQL---RRK----SYDSRYSSLIKLAESLDACKPNEADVCDVITGFGGKLF 216

Query: 154 RENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEM 213
            ++A++ LN++   + +    N +        E I YNVTMK  R  +  +  E+L +EM
Sbjct: 217 EQDAVVTLNNMTNPETAPLVLNNLLETMKPSREVILYNVTMKVFRKSKDLEKSEKLFDEM 276

Query: 214 VSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKV 273
           +   I+ DN T++TII+CA++  +   A+EWFE+M   G  PD VT +A++D Y ++G V
Sbjct: 277 LERGIKPDNATFTTIISCARQNGVPKRAVEWFEKMSSFGCEPDNVTMAAMIDAYGRAGNV 336

Query: 274 EEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTL 333
           +  LSLY+R     W+ D + FS L +++G SG+YDG   + +EMK+LGV+PNLV+YN L
Sbjct: 337 DMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKALGVKPNLVIYNRL 396

Query: 334 LEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKW 393
           +++MG+A +P  A+ ++ +++ +G TP+  T  AL++ YG+AR+  DAL ++  M+E   
Sbjct: 397 IDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDALAIYREMKEKGL 456

Query: 394 PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAI 453
            +  ILYNTLL+MCAD   V+EA  +F+DMK  + C PD++++++++ +Y   G V  A 
Sbjct: 457 SLTVILYNTLLSMCADNRHVDEAFEIFQDMKNCETCDPDSWTFSSLITVYACSGRVSKAE 516

Query: 454 ELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVV 513
               ++ E G    +   T +IQC GKA+++DD+VR F   ++ G+ PDDR CGCLL+V+
Sbjct: 517 AALLQIREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITPDDRFCGCLLNVM 576

Query: 514 SLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENI-KEEFRNVIKDTEVDARRPF 572
           +    SE++GK+I C+++A PKL   + ++ +     E + K+E   +I     D ++ +
Sbjct: 577 TQ-TPSEEIGKLIGCVEKAKPKLGQVVKMLVEEQNCEEGVFKKEASELIDSIGSDVKKAY 635

Query: 573 CNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALEEW 632
            NCLID+C N N  ERA E+L LG  Y +Y GL +K+  +WSL ++SLS+GAA TAL  W
Sbjct: 636 LNCLIDLCVNLNKLERACEILQLGLEYDIYTGLQSKSATQWSLHLKSLSLGAALTALHVW 695

Query: 633 MWTLAKIVLRE-EVLPQLFLAETGTGTHKFS-QGLATAFASHVNKLAAPFRQSEGKAGCF 690
           M  L++  L   E  P L    TG G HK+S +GLA  F SH+ +L APF ++  K G F
Sbjct: 696 MNDLSEAALESGEEFPPLLGINTGHGKHKYSDKGLAAVFESHLKELNAPFHEAPDKVGWF 755

Query: 691 VATREDLVSWVQARPSS 707
           + T     +W+++R S+
Sbjct: 756 LTTSVAAKAWLESRRSA 772


>gi|356532361|ref|XP_003534742.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic-like [Glycine max]
          Length = 646

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 234/619 (37%), Positives = 362/619 (58%), Gaps = 9/619 (1%)

Query: 92  STWVNPTKPRRSVLSLQRQKRSTYSYNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQ 151
           S WVNP  PR   L          SY+ R   L   AR L+ C+ T++     +  +   
Sbjct: 33  SIWVNPKSPRAKHLWKN-------SYHTRSSSLTKLARSLDSCNPTQQHVSEILKVLGDN 85

Query: 152 PTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLAN 211
               +A+ ILNS+     +     + K +       I YNVT+K  R  + F+  E+L +
Sbjct: 86  VLEADAVFILNSMVNPYTALLAVEYFKQKIKHARHVILYNVTLKLFREVKDFEGAEKLFD 145

Query: 212 EMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG 271
           EM+   +  + IT+ST+I CA  C+L  +A++WFE M   G  PD+   S+++  YA++G
Sbjct: 146 EMLQRGVNPNLITFSTMIICASVCSLPHKAVKWFEMMPSFGCEPDDNVCSSMIYSYARTG 205

Query: 272 KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYN 331
             +  L LY+R  A  W  D + FS L KM G SG+YDG   V  ++K LG +PNLV YN
Sbjct: 206 NADMALRLYDRAKAEKWHVDTVVFSGLIKMHGMSGNYDGCLNVYNDLKVLGAKPNLVTYN 265

Query: 332 TLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN 391
            LL AMG+A +   A+++++EM+ +GLTP+  T  AL++ Y +AR+ +DAL +++ M+E 
Sbjct: 266 ALLYAMGRAKRARDAKAIYEEMINNGLTPNWPTYAALLQAYCRARFNRDALNVYKEMKEK 325

Query: 392 KWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDN 451
              +D +LYN L +MCA++G   EA ++FEDMK S  C+PD+++Y +++N+Y S G +  
Sbjct: 326 GKDLDILLYNMLFDMCANVGCEGEAVKIFEDMKSSGTCRPDSFTYASLINMYSSIGKISE 385

Query: 452 AIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
              +F EM E G   N++  T L+ C GKA+R DD+V++F   +D G+ PD R C CLL 
Sbjct: 386 MEAMFNEMMESGFEPNIIVLTSLVHCYGKAKRTDDVVKIFNQLMDLGISPDGRFCDCLLY 445

Query: 512 VVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRP 571
            ++     E++GK+  C+++ANPKL + L  I +   G  + + E   ++  TE D ++ 
Sbjct: 446 AMTQV-PKEELGKLTGCVEKANPKLGSVLRYIMEKQEGGGDFRMEASELLNSTEADIKKS 504

Query: 572 FCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALEE 631
            CNCLID+C N ++ +RA +LL LG    +Y  + +++  +WSL ++ LSVGAA TAL  
Sbjct: 505 MCNCLIDLCVNLDVPDRARDLLDLGLTLEIYTDIQSRSQAKWSLHLKRLSVGAALTALSV 564

Query: 632 WMWTLAKIVLREEVLPQLFLAETGTGTHKFS-QGLATAFASHVNKLAAPFRQSEGKAGCF 690
           W+  L+K +   E LP L    TG G H+FS + L T F  ++ +L APF ++  KAG F
Sbjct: 565 WINDLSKTLELGEELPPLLGINTGGGKHRFSDKVLPTVFELYLKELKAPFHKAANKAGWF 624

Query: 691 VATREDLVSWVQARPSSIT 709
           +AT E   SW+Q+R S + 
Sbjct: 625 LATSEAATSWLQSRGSVVV 643


>gi|356557981|ref|XP_003547288.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic-like [Glycine max]
          Length = 706

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 241/649 (37%), Positives = 370/649 (57%), Gaps = 10/649 (1%)

Query: 62  LSLSEQLKPLSSTTLSPTKNDRTPLLSKPKSTWVNPTKPRRSVLSLQRQKRSTYSYNPRV 121
            S S Q K L         N ++  LSK  S WVNP  PR   L          SY+ R 
Sbjct: 64  FSSSHQPKTLLQDAKLDDPNAKSSPLSK-TSIWVNPKSPRAKHLWKN-------SYHARS 115

Query: 122 RDLKLFARKLNDCDNTEEAFLRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQN 181
             L   A+ L+ C+ T+E     +  +       +A+ ILNS+     +     + K + 
Sbjct: 116 SSLTKLAKSLDSCNPTQEHVSEILKVLGDSVLEPDAVFILNSMVNPYTALLAVEYFKQKV 175

Query: 182 LFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEA 241
                 I YNVT+K  R  + F+  E+L +EM+   +  + IT+ST+I+CA  C+L  +A
Sbjct: 176 KSVRHVILYNVTLKLFRKVKDFEGAEKLFDEMLHRGVNPNLITFSTMISCASVCSLPHKA 235

Query: 242 IEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKM 301
           ++WFE M   G  PD    S+++  Y ++G  +  L LY+R  A  W  D   FS L KM
Sbjct: 236 VKWFEMMPSFGCEPDNNVCSSMIYAYTRTGNTDMALRLYDRAKAGKWHVDTAVFSGLIKM 295

Query: 302 FGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD 361
           +G SG+Y G   V  +MK LG +PNL  YN LL AMG+A +   A++++ EM+ +GL+P+
Sbjct: 296 YGVSGNYVGCLNVYNDMKVLGAKPNLTTYNALLYAMGRAKRARDAKAIYGEMISNGLSPN 355

Query: 362 EKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFE 421
             T  AL++ Y +AR+ +DAL +++ M+E    +D +LYN L +MCA++G V+EA ++FE
Sbjct: 356 WPTYAALLQAYCRARFNRDALNVYKEMKEKGKDLDILLYNMLFDMCANVGCVDEAVKIFE 415

Query: 422 DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
            MK S  C PD+++Y +++N+Y S G +     +F EM E G   N++  T L+ C GKA
Sbjct: 416 HMKSSGTCPPDSFTYASLINMYSSIGKILEMEAMFNEMMESGFEPNIIVLTSLVHCYGKA 475

Query: 482 RRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLN 541
           +R DD+V++F   +D G+ PD R C CLL  ++     E++GK+  C+++ANPKL + L 
Sbjct: 476 KRTDDVVKIFNQLMDLGISPDGRFCDCLLYAMTQVP-KEELGKLSGCVEKANPKLGSVLR 534

Query: 542 LIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLYGL 601
            I +   G  + + E   +   TE D ++  CNCLID+C + ++ +RA +LL LG    +
Sbjct: 535 YIMEKQEGGGDFRTEASELFNSTEADVKKSMCNCLIDLCVSLDVPDRARDLLDLGLTLEI 594

Query: 602 YPGLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQLFLAETGTGTHKF 661
           YP + +++  +WSL ++ LSVGAA TAL  W+  L+K +   E LP L    TG G H+F
Sbjct: 595 YPDIQSRSQAKWSLHLKRLSVGAALTALSVWISDLSKALELGEELPPLLGINTGGGKHRF 654

Query: 662 S-QGLATAFASHVNKLAAPFRQSEGKAGCFVATREDLVSWVQARPSSIT 709
           S + L T F S++ +L APF +   KAG F+AT E   SW+Q+R S++ 
Sbjct: 655 SDKVLPTVFESYLKELKAPFHKDANKAGWFLATSEAATSWLQSRGSTVA 703


>gi|297736717|emb|CBI25753.3| unnamed protein product [Vitis vinifera]
          Length = 728

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 234/625 (37%), Positives = 362/625 (57%), Gaps = 42/625 (6%)

Query: 81  NDRTPLLSKPKSTWVNPTKPRRSVLSLQRQKRSTYSYNPRVRDLKLFARKLNDCDNTEEA 140
           N + P        WVNP  PR S L   RQ    +SY+ R   L   A  L+ C+ TEE 
Sbjct: 77  NSQDPDRKTKSYIWVNPRSPRASKL---RQ----HSYDARYASLVKIAESLDSCEATEED 129

Query: 141 FLRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFG 200
             + +  +  +   ++A+++LN++   + +   F + + +     E I YNVT+K  R  
Sbjct: 130 VSQVLRCLGDKILEQDAVIVLNNMTNPETALLAFGFFRKRLKPSREVILYNVTLKVFRKC 189

Query: 201 RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTY 260
           R     E+L +EM+   ++ DNIT+STII+CA+  +L ++A+EWFE+M + G  PD+VTY
Sbjct: 190 RNLDRAEKLFDEMLERGVKPDNITFSTIISCARVSSLPNKAVEWFEKMPEFGCHPDDVTY 249

Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
           SA++D Y ++G V+  L LY+R     W+ DP+ FS L +++G SG++DG   V +EMK+
Sbjct: 250 SAMIDAYGRAGNVDMALKLYDRARTEKWRIDPVTFSTLIRIYGMSGNFDGCLNVYEEMKA 309

Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380
           LGV+PNLV+YNTLL+AMG+A +P  A++++ EM  +GL P   T  AL++ YG+AR+A+D
Sbjct: 310 LGVKPNLVIYNTLLDAMGRAKRPWQAKNIYKEMTNNGLQPSWGTYAALLRAYGRARYAED 369

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
           AL +++ M+E                                 K S  C PD++++++++
Sbjct: 370 ALIVYKEMKE---------------------------------KGSGNCMPDSWTFSSLI 396

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
            IY   G V  A  +   M E G   N+   T LIQC GKA R D++VR F   ++  + 
Sbjct: 397 TIYSCSGKVSEAEAMLNAMLEAGFEPNIFVLTSLIQCYGKANRTDEVVRTFDRLLELDIT 456

Query: 501 PDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNV 560
           PDDR CGC+L+V++     E++GK+I C+ +ANPKL   + L+ +   G    ++E   +
Sbjct: 457 PDDRFCGCMLNVMTQ-SPKEELGKLIDCIDKANPKLGNVVKLLLEEQNGEGTFRKEASEL 515

Query: 561 IKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSL 620
                 D ++ +CNCLID+C N NL E+A EL  LG    +Y  + +K+  +WSL ++SL
Sbjct: 516 FDSISADVKKAYCNCLIDLCVNLNLLEKACELFDLGLTLEIYIDIQSKSPTQWSLHLKSL 575

Query: 621 SVGAAQTALEEWMWTLAKIVLREEVLPQLFLAETGTGTHKFS-QGLATAFASHVNKLAAP 679
           S+GAA TAL  WM  L+K V   E LP +    TG G HK+S +GLA+ F SH+ +L AP
Sbjct: 576 SLGAALTALHIWMNDLSKAVEVGEELPAVLGINTGHGKHKYSDKGLASVFESHLKELNAP 635

Query: 680 FRQSEGKAGCFVATREDLVSWVQAR 704
           F ++  K G F+ T+    SW+++R
Sbjct: 636 FHEAPDKVGWFLTTKVAATSWLESR 660


>gi|212275714|ref|NP_001130387.1| uncharacterized protein LOC100191483 [Zea mays]
 gi|194689000|gb|ACF78584.1| unknown [Zea mays]
 gi|414865541|tpg|DAA44098.1| TPA: hypothetical protein ZEAMMB73_448674 [Zea mays]
          Length = 691

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 228/581 (39%), Positives = 351/581 (60%), Gaps = 9/581 (1%)

Query: 134 CDNTEEAFLRAI-TEIPHQPTRENALLILNSLKFWQKS--YFFFNWIKSQNLFPMETIFY 190
           C+ TE A   A+    P  P+ ++A+++LN+    +         W         + I Y
Sbjct: 108 CETTESAVEAALQAAFPEPPSEQDAVIVLNTAAATRAETAVLALRWFLGNAKVRKKVILY 167

Query: 191 NVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYK 250
           NV +K LR  R +   E L  EM+ + ++ DN T+ST+I+CA+ C L  +A+EWF++M +
Sbjct: 168 NVVLKLLRKKRLWSETEALWAEMLRDGVQPDNATFSTVISCARACGLHSKAVEWFDKMPE 227

Query: 251 TGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDG 310
            G  PD +TYSA++D Y  +G  E  L LY+R  A  W+ DP+  S + K+   SG++DG
Sbjct: 228 FGCSPDMLTYSAVIDAYGHAGNSEAALRLYDRARAEKWQLDPVICSTVIKVHSTSGNFDG 287

Query: 311 IRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK 370
              V +EMK++GV+PNLVVYNT+L+AMG+A +P + +++  EMV+  + P   T   L+ 
Sbjct: 288 ALNVFEEMKAIGVRPNLVVYNTMLDAMGRALRPWVVKTIHREMVDQQVQPSRATYCCLLH 347

Query: 371 IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS--DY 428
            Y +AR+ +DA+ ++  M++    +D +LYN LL+MCADIG V+EAE +F DMK S   +
Sbjct: 348 AYTRARYGEDAMAVYRLMKDEAMGIDVMLYNMLLSMCADIGYVDEAEEIFRDMKASMGAH 407

Query: 429 CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLV 488
            KPD++SY++M+ +Y S  NV +A  +  EM E G   N+   T LI+C GK  R DD+V
Sbjct: 408 SKPDSWSYSSMVTLYSSTANVLSAEGILNEMVEAGFKPNIFVLTSLIRCYGKVGRTDDVV 467

Query: 489 RVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNST 548
           R FG+  D G+ PDDR CGCLLSV +    +E++GKVI+C++++N +L A + L+ D S+
Sbjct: 468 RSFGMLQDLGIIPDDRFCGCLLSVAA-NTPAEELGKVISCIERSNVQLGAVVKLLVDRSS 526

Query: 549 GFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNK 608
             E+ +E  R +++ +    + P+CNCL+D+C N N  E+A  LL      G+Y  +  +
Sbjct: 527 S-ESFREAARELLRSSRGVVKMPYCNCLMDLCVNLNQMEKACALLDAAQQLGIYANIQTR 585

Query: 609 TLDEWSLDVRSLSVGAAQTALEEWMWTL-AKIVLREEVLPQLFLAETGTGTHKFS-QGLA 666
           T  +WSL +R LSVGAA T L  WM  L   +    E LP L    TG G + +S +GLA
Sbjct: 586 TQTQWSLHLRGLSVGAALTTLHVWMNDLYTSLQTGNEGLPPLLGIHTGQGKNTYSDRGLA 645

Query: 667 TAFASHVNKLAAPFRQSEGKAGCFVATREDLVSWVQARPSS 707
             F +H+ +L APF ++  KAG F+ T      W++++ +S
Sbjct: 646 AMFEAHLKELDAPFHEAPDKAGWFLTTNVAAKQWLESKAAS 686


>gi|356532363|ref|XP_003534743.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic-like [Glycine max]
          Length = 693

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 233/626 (37%), Positives = 365/626 (58%), Gaps = 12/626 (1%)

Query: 83  RTPLLSKPKSTWVNPTKPRRSVLSLQRQKRSTYSYNPRVRDLKLFARKLNDCDNTEEAFL 142
           ++P LSK KS WVNP  PR      Q Q+ S ++   R   L   A+ L+ C+ TEE   
Sbjct: 61  KSPSLSK-KSFWVNPRSPRAK----QLQQNSPHA---RSSSLTKLAKSLDSCNPTEEHVS 112

Query: 143 RAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQ 202
             +  + +     +A+ ILN++     +     + + +       + YNVT+K LR  + 
Sbjct: 113 EILNVLGNNVAERDAVFILNTMANPNTALLALKYFQQKISPGKHVVLYNVTLKVLREVKD 172

Query: 203 FQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSA 262
           F+  E+L +EM+   +E + IT+STII+ A  C+L D+A+EWFE+M   G+ PD    S 
Sbjct: 173 FEGSEKLFDEMLQRGVEPNLITFSTIISSASVCSLPDKAMEWFEKMPSFGVEPDASVASF 232

Query: 263 ILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG 322
           ++  YA SG  +  L LY R  A  W+ D  AFS L KM G   ++DG   V  +MK LG
Sbjct: 233 MIHAYAHSGNADMALKLYGRAKAEKWRVDTAAFSALIKMCGMLENFDGCLSVYNDMKVLG 292

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382
            +PN+V YN LL AMG+A +   A+++++EM+ +G +P+  T  AL++ Y KAR+ +DAL
Sbjct: 293 AKPNMVTYNALLYAMGRAKRALDAKAIYEEMISNGFSPNWPTHAALLQAYCKARFPEDAL 352

Query: 383 ELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNI 442
            +++ M+ N   +   LYN LL MCAD+G  + A  +F +MK S  C+PD++++++M+ +
Sbjct: 353 GVYKEMKGNGMDITADLYNKLLAMCADVGYTDRASEIFYEMKSSGTCQPDSWTFSSMITM 412

Query: 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           Y   G V  A  +  EM + G    +   T LI C GKA+R DD+V++F   +D G+ P+
Sbjct: 413 YSRSGKVSEAEGMLNEMIQSGFQPTIFVMTSLICCYGKAKRTDDVVKIFKQLLDLGIVPN 472

Query: 503 DRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIK 562
           D  C  LL+V++     E++GK+  C+++AN KL   +  + +   G E  ++E   ++ 
Sbjct: 473 DHFCCSLLNVLTQT-PKEELGKLTDCIEKANTKLGTVVRYLMEELEGDEAFRKEALELLN 531

Query: 563 DTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLSV 622
             + + ++P CNCLID+C   N+ ERA +LL LG +  +Y  +  K+  +WSL ++ LSV
Sbjct: 532 SIDAEVKKPLCNCLIDLCVKLNVPERARDLLDLGLMLEIYTNIQFKSQTQWSLHLKELSV 591

Query: 623 GAAQTALEEWMWTLAKIVLREEVLPQLFLAETGTGTHKFS-QGLATAFASHVNKLAAPFR 681
           GAA TAL  W+  L+K +   E LP L    TG G HK+S +GLA+ F SH+ +L APF 
Sbjct: 592 GAAMTALHVWINELSKALESGEDLPPLLGINTGQGKHKYSDKGLASVFESHLKELNAPFH 651

Query: 682 QSEGKAGCFVATREDLVSWVQARPSS 707
           +S  KAG F+ T+    SW+++R S+
Sbjct: 652 ES--KAGWFLVTKAAAKSWLESRDST 675


>gi|297600539|ref|NP_001049380.2| Os03g0215900 [Oryza sativa Japonica Group]
 gi|108706847|gb|ABF94642.1| RSP67.2, putative, expressed [Oryza sativa Japonica Group]
 gi|255674311|dbj|BAF11294.2| Os03g0215900 [Oryza sativa Japonica Group]
          Length = 676

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 218/564 (38%), Positives = 338/564 (59%), Gaps = 5/564 (0%)

Query: 148 IPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNL-FPMETIFYNVTMKSLRFGRQFQLI 206
            P  P+ ++A+++LN+      +     W   +N     E I YNV +K+LR  R++   
Sbjct: 109 FPEPPSEQDAVIVLNTTSARPAAVVLALWWFLRNAEVRKEVILYNVALKALRKRRRWSDA 168

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
           E L  EM+   ++ DN T+ST+I+CA+ C +  +A+EWFE+M   G  PD +TYSA++D 
Sbjct: 169 EALWEEMLREGVQPDNATFSTVISCARACGMPGKAVEWFEKMPDFGCSPDMLTYSAVIDA 228

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
           Y ++G  E  L LY+R  A  W+ DP+  + + ++   SG++DG   V +EMK+ GV+PN
Sbjct: 229 YGRAGDAETALRLYDRARAEKWQLDPVICATVIRVHSSSGNFDGALNVFEEMKAAGVKPN 288

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
           LVVYNT+L+AMG+A +P + +++  E+V     P++ T   L+  Y +AR+ +DA+ ++ 
Sbjct: 289 LVVYNTVLDAMGRAMRPWVVKTIHRELVSQEAVPNKATYCCLLHAYTRARYGEDAMAVYR 348

Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS--DYCKPDNYSYTAMLNIYG 444
            M++    +D +LYN LL+MCADIG VEEAE +F DMK S     KPD++SY++M+ +Y 
Sbjct: 349 VMKDEVMDIDVVLYNMLLSMCADIGYVEEAEEIFRDMKASMDSRSKPDSWSYSSMVTLYS 408

Query: 445 SGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR 504
             GNV  A  +  EM E G   N+   T LI+C GKA R DD+VR F +  D G+ PDDR
Sbjct: 409 CTGNVAGAEGILNEMVEAGFKPNIFILTSLIRCYGKAGRTDDVVRSFAMLEDLGITPDDR 468

Query: 505 LCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDT 564
            CGCLL+V +    ++++GKVI C+ +++ +L A + L+ D +   E ++E    ++   
Sbjct: 469 FCGCLLTVAA-GTPADELGKVIGCIDRSSAQLGAVVRLLVDAAAPSEPLREAAGELLGGA 527

Query: 565 EVDARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLSVGA 624
               R P+CNCL+D+  N +  E+A  LL +    G+Y  +  +T  +WSL +R LSVGA
Sbjct: 528 RGVVRMPYCNCLMDLAVNLSQMEKACALLDVALRLGIYSNVQTRTQTQWSLHLRGLSVGA 587

Query: 625 AQTALEEWMWTLAKIVLREEVLPQLFLAETGTGTHKFS-QGLATAFASHVNKLAAPFRQS 683
           A T L  WM  L   +   + LP L    TG G + +S +GLAT F SH+ +L APF ++
Sbjct: 588 ALTTLHVWMSDLYAALQAGDELPPLLGIHTGQGKNTYSYKGLATVFESHLKELDAPFHEA 647

Query: 684 EGKAGCFVATREDLVSWVQARPSS 707
             KAG F+ T      W++ + S+
Sbjct: 648 PDKAGWFLTTSVAARHWLETKKSA 671


>gi|242036493|ref|XP_002465641.1| hypothetical protein SORBIDRAFT_01g042790 [Sorghum bicolor]
 gi|241919495|gb|EER92639.1| hypothetical protein SORBIDRAFT_01g042790 [Sorghum bicolor]
          Length = 691

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 220/566 (38%), Positives = 337/566 (59%), Gaps = 7/566 (1%)

Query: 148 IPHQPTRENALLILNSLKFW--QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQL 205
            P  P+ ++A+++LN+      + +     W         + I YNV +  LR  R +  
Sbjct: 122 FPEPPSEQDAVIVLNTAAAARPETALLALRWFLGNAKVRKKVILYNVVLNLLRKKRHWSE 181

Query: 206 IEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
            E L  EM+ + ++ DN T+ST+I+CA+ C L  +A+EWF++M + G  PD +TYSA++D
Sbjct: 182 TEALWAEMLRDGVQPDNATFSTVISCARACGLHSKAVEWFDKMPEFGCSPDMLTYSAVID 241

Query: 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325
            Y ++G  E  L LY+R  A  W+ DP+  S + K+   SG++DG   V +EMK+ GV+P
Sbjct: 242 AYGRAGNSEAALRLYDRARAEKWQLDPVICSTVIKVHSISGNFDGALNVFEEMKATGVKP 301

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
           NLVVYNT+L+AMG+A +P + +++  EMV+  + P   T   L+  Y +AR+ +DA+ ++
Sbjct: 302 NLVVYNTMLDAMGRALRPWVVKTIHREMVDQQVQPSRATYCCLLHAYTRARYGEDAMAVY 361

Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS-DYC-KPDNYSYTAMLNIY 443
             M++    +D +LYN LL+MCADIG V+EAE +F DMK S D C KPD++SY++M+ +Y
Sbjct: 362 RLMKDEAMDIDVMLYNMLLSMCADIGYVDEAEEIFRDMKASMDACSKPDSWSYSSMVTLY 421

Query: 444 GSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
            S  NV  A  +  EM E G   N+   T LI+C GK  R DD+V+ FG+  D  + PDD
Sbjct: 422 SSTANVLGAEGILNEMVEAGFKPNIFVLTSLIRCYGKVGRTDDVVKSFGMLQDLCIIPDD 481

Query: 504 RLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKD 563
           R CGCLLSV +     E++GKVI+C++ +N +L A + L+ D S+  E+ +E    ++  
Sbjct: 482 RFCGCLLSVAANTPV-EELGKVISCIETSNAQLGAVVKLLVDRSSSPESFREAASELLGC 540

Query: 564 TEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLSVG 623
           +    + P+CNCL+D+C N N  E+A  LL       +Y  +  +T  +WSL +R LSVG
Sbjct: 541 SRGVVKMPYCNCLMDLCVNLNQMEKACALLDAAQQLSIYANIQTRTQTQWSLHLRGLSVG 600

Query: 624 AAQTALEEWMWTL-AKIVLREEVLPQLFLAETGTGTHKFS-QGLATAFASHVNKLAAPFR 681
           AA T L  WM  L   +    E LP L    TG G + +S +GLA  F +H+ +L APF 
Sbjct: 601 AALTTLHVWMNDLYTSLQTGNEGLPPLLGIHTGQGKNTYSDRGLAAMFEAHLKELDAPFH 660

Query: 682 QSEGKAGCFVATREDLVSWVQARPSS 707
           ++  KAG F+ T      W++ + +S
Sbjct: 661 EAPDKAGWFLTTSVAAKHWLETKAAS 686


>gi|356532365|ref|XP_003534744.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic-like [Glycine max]
          Length = 705

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 226/627 (36%), Positives = 366/627 (58%), Gaps = 14/627 (2%)

Query: 87  LSKPKSTWVNPTKPRRSVLSLQRQKRSTYSYNPRVRDLKLFARKLNDCDNTEEAFLRAIT 146
           LSK +  WVNP  PR   L   +   + YSY  R+ +       LN C  + +     + 
Sbjct: 70  LSKTR-IWVNPNSPRAKHLQ-PKSPSARYSYLARLTE------SLNSCTPSAQHVSTILK 121

Query: 147 EIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFP---METIFYNVTMKSLRFGRQF 203
            +    +  +A+ IL+ +   + + F     + + + P    E I YN T+K+ R  R F
Sbjct: 122 GLRDNVSERDAVFILDKMTNPETAPFVLGHFRDK-IKPSTDKEVILYNATLKAFRKSRDF 180

Query: 204 QLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAI 263
           +  E+L +EM+   ++ DNIT+ST+I  A+ C L D+A+EWF++M   G  PD +T SA+
Sbjct: 181 EGAEKLFDEMLQRGVKPDNITFSTLINSARMCALPDKAVEWFKKMPSFGCEPDAMTCSAM 240

Query: 264 LDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGV 323
           +  YA++  V+  LSLY R  A  W  D   FS L KM+G  G+Y     +  EMK LGV
Sbjct: 241 VSAYAQTNNVDMALSLYGRAKAEKWSLDASTFSTLIKMYGVLGNYVECLRIFGEMKVLGV 300

Query: 324 QPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALE 383
           +P +V YNTLL ++ ++ K   A++++ EM+ +G++PD  T   L++IY  A++ +DAL 
Sbjct: 301 KPTVVTYNTLLGSLFRSKKSWQAKNVYKEMISNGVSPDFITYATLLRIYAGAQYREDALS 360

Query: 384 LWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIY 443
           +++ M+ N   M   LYN LL+MCAD+G +EEA  +FEDMK S  C+PD+ ++++++ +Y
Sbjct: 361 VYKEMKGNGMDMTVDLYNRLLDMCADVGCIEEAVEIFEDMKSSGTCQPDSLTFSSLITVY 420

Query: 444 GSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
              G V  A  +  EM + G    +   T L+QC G+A++ DD+V++F   +D G+ PD 
Sbjct: 421 SCNGKVSEAEGMLNEMIQSGFQPTIYVLTSLVQCYGRAKQTDDVVKIFKQLLDLGIVPDV 480

Query: 504 RLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKD 563
             C CLL+V++     E+ GK+  C+++AN +L + +  + +   G  + ++E   ++  
Sbjct: 481 YFCCCLLNVMTQ-TPKEEFGKLTDCIEKANTRLGSVVRYLVEGQEGDGDFRKEASELLNS 539

Query: 564 TEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLSVG 623
            +   ++P CNCLID+C + N   RA ++L LG +  +Y  + +++  +WSL ++ LSVG
Sbjct: 540 IDFKVKKPLCNCLIDLCVSLNAPNRARDVLDLGLMLEIYKNIQSRSETQWSLHLKKLSVG 599

Query: 624 AAQTALEEWMWTLAKIVLREEVLPQLFLAETGTGTHKFS-QGLATAFASHVNKLAAPFRQ 682
           AA TAL  W+  L+K +   E LP L    TG G HK+S +GLA+ F SH+ +L APF Q
Sbjct: 600 AAITALHVWINDLSKALESWEDLPPLLGVNTGQGKHKYSDKGLASVFESHLRELNAPFHQ 659

Query: 683 SEGKAGCFVATREDLVSWVQARPSSIT 709
           +  KAG F+ T+E   SW+++R S+ T
Sbjct: 660 APDKAGWFLVTKEAAKSWLESRGSAET 686


>gi|356557985|ref|XP_003547290.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic-like [Glycine max]
          Length = 692

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 225/626 (35%), Positives = 364/626 (58%), Gaps = 12/626 (1%)

Query: 83  RTPLLSKPKSTWVNPTKPRRSVLSLQRQKRSTYSYNPRVRDLKLFARKLNDCDNTEEAFL 142
           ++P LSK  S WVNP  PR   L    QK S ++   R   L   A+ L+ C+ TE+   
Sbjct: 60  KSPSLSK-NSIWVNPRSPRAKHL----QKNSPHA---RSSSLTKLAKSLDSCNPTEQHVS 111

Query: 143 RAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQ 202
             +  +    +  +A+ ILN++     +     + + +       + YNVT+K LR  R 
Sbjct: 112 EILNVLRDNVSERDAVFILNTMVNPNTALLALKYFQPKINPAKHVVLYNVTLKVLRESRD 171

Query: 203 FQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSA 262
           F+  E+L +EM+   ++ DNIT+ST++ CA    L ++A+E FE+M   G  PD +T S 
Sbjct: 172 FEGAEKLFDEMLQRGVKPDNITFSTLVNCASVSGLPNKAVELFEKMSGFGCEPDGITCSG 231

Query: 263 ILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG 322
           ++  YA++  V++ ++LY+R  A  W  D + FS L KM+  +G+YD    V QEMK LG
Sbjct: 232 MVYAYARTNNVDKAVNLYDRAKAENWSLDAVTFSTLIKMYSMAGNYDKCLEVYQEMKVLG 291

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382
           V+PN+  YNTLL AM ++ K   A+++  EM  +G++PD  T  +L+++Y +A+ ++DAL
Sbjct: 292 VKPNVATYNTLLGAMLRSKKHRQAKAIHKEMKSNGVSPDFITYASLLEVYTRAQCSEDAL 351

Query: 383 ELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNI 442
            +++ M+ N   M   LYN LL MCAD+G  + A  +F +MK S  C+PD++++++++ I
Sbjct: 352 GVYKEMKGNGMDMTADLYNKLLAMCADVGYTDRAVEIFYEMKSSGTCQPDSWTFSSLITI 411

Query: 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           Y   G V     +  EM + G    +   T LI+C GKA+R DD+V++F   +D G+ P+
Sbjct: 412 YSRSGKVSEVEGMLNEMIQSGFQPTIFVMTSLIRCYGKAKRTDDVVKIFKQLLDLGIVPN 471

Query: 503 DRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIK 562
           D  C CLL+V++     E++GK+  C+++AN KL   +  + +     E  ++E   ++ 
Sbjct: 472 DHFCCCLLNVLTQ-TPKEELGKLTDCIEKANTKLGTVVRYLVEEQESDEGFRKETLELLN 530

Query: 563 DTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLSV 622
             + + ++P CNCLID+C   N+ ERA  LL LG +  +Y  + +K+  +WSL ++ LSV
Sbjct: 531 SIDAEVKKPLCNCLIDLCVKLNVPERACGLLDLGLMLEIYKNIQSKSQTQWSLHLKELSV 590

Query: 623 GAAQTALEEWMWTLAKIVLREEVLPQLFLAETGTGTHKFS-QGLATAFASHVNKLAAPFR 681
           GAA TAL  W+  L++ +   E LP L    TG G HK+S +GLA+ F S + +L APF 
Sbjct: 591 GAAMTALHVWINDLSEALESGEDLPPLLGINTGQGKHKYSDKGLASVFESRLKELNAPFH 650

Query: 682 QSEGKAGCFVATREDLVSWVQARPSS 707
             E KAG F+ T+     W+++R S+
Sbjct: 651 --EAKAGWFLVTKAAAKLWLESRDST 674


>gi|357113402|ref|XP_003558492.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic-like [Brachypodium distachyon]
          Length = 688

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 212/559 (37%), Positives = 337/559 (60%), Gaps = 5/559 (0%)

Query: 153 TRENALLILNSLKFWQKSYFF-FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLAN 211
           + ++A+++LN++     +      W         + I YNV +K+LR  R++   E L +
Sbjct: 126 SEQDAVIVLNTVVGNPATALLALRWFLGNAEVRNKGILYNVVLKALRKRRRWSDTEALWD 185

Query: 212 EMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG 271
           EM+ + ++ DN T+ST+I+CA+ C L  +A+EWFE+M   G  PD +TYSA++D Y ++G
Sbjct: 186 EMLRDGVQPDNTTFSTVISCARACGLPRKAVEWFEKMPGLGCSPDMLTYSAVIDAYGRAG 245

Query: 272 KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYN 331
             +  L LY+R  A   + DP+  + + K+   SG++ G   V +EMK++GV+PNLVVYN
Sbjct: 246 DADMALRLYDRARAEKCQLDPVICATVIKVHSTSGNFAGALNVFEEMKAVGVKPNLVVYN 305

Query: 332 TLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN 391
           T+L+AMG+A +P + +++  EMV   + P+  T   L++ Y +AR+ +DA+ ++  M++ 
Sbjct: 306 TVLDAMGRAMRPWVVKTIHREMVSQQVQPNRATYCCLLQAYTRARYGEDAMVVYRMMKDE 365

Query: 392 KWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC--KPDNYSYTAMLNIYGSGGNV 449
              +D +LYN LL+MCADIG ++EAE +F DMK       KPD+++Y++M+ +Y   GNV
Sbjct: 366 VMDIDVVLYNMLLSMCADIGYIDEAEEIFRDMKAHTDTRFKPDSWTYSSMVTLYSCTGNV 425

Query: 450 DNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCL 509
             A  + +EM+E G   N+   T LI+C GKA   DD+VR FG+  D  ++PDDR CGCL
Sbjct: 426 LGAEGILKEMAEAGFKPNIFILTSLIRCYGKAGHTDDVVRSFGMLEDLNIRPDDRFCGCL 485

Query: 510 LSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDAR 569
           L+V +     E++GKV+ C+ ++N +L   + L+ D +   E+ +E  R ++       +
Sbjct: 486 LTVAADTPV-EELGKVVDCIDRSNAQLGTVVKLLVDRNASTESFREAARGILSGVRGVVK 544

Query: 570 RPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTAL 629
            P+CNCL+D+C N    E+A  LL +     +Y  +  KT  +WSL +R LSVGAA T L
Sbjct: 545 VPYCNCLMDLCVNLGQTEKACALLDVALQLDVYRNVQTKTQTQWSLHLRGLSVGAALTTL 604

Query: 630 EEWMWTLAKIVLREEVLPQLFLAETGTGTHKFS-QGLATAFASHVNKLAAPFRQSEGKAG 688
             WM  L   +   E LP L    TG G + +S +GLA+AF SH+ ++ APF  +  KAG
Sbjct: 605 HVWMNDLRSTLQSGEELPPLLGIHTGEGRNMYSDKGLASAFESHLKEIDAPFHAAPDKAG 664

Query: 689 CFVATREDLVSWVQARPSS 707
            F+ T      W++A+ SS
Sbjct: 665 WFLTTSVAAKHWLKAKESS 683


>gi|356577949|ref|XP_003557083.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic-like [Glycine max]
          Length = 700

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 238/652 (36%), Positives = 369/652 (56%), Gaps = 25/652 (3%)

Query: 61  TLSLSEQLKPLSSTTLSPTKND---RTPLLSKPKSTWVNPTKPRRSVLSLQRQKRSTYSY 117
           T  LS   K L     + T  D   ++  LSK  S WVNP  PR  V  L +       Y
Sbjct: 50  TFPLSHNPKTLLQVQATYTPQDPDAKSSSLSK-TSIWVNPKSPR--VKHLWKN-----PY 101

Query: 118 NPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWI 177
           + R   L   A+ L+ C+ T++   + +  +  +    +A++ILNS+     +    N+ 
Sbjct: 102 HARSSSLTKLAKSLDSCNPTQQRVSQILQVLGDKVFESDAVVILNSMVNPYTALLAVNYY 161

Query: 178 KSQNLFP-METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCN 236
            +Q + P    + YNVT+K  R  R F+  E+L +EM+   ++ +N T+ST++ CA    
Sbjct: 162 FTQKIKPSRHVVLYNVTLKLFRAVRDFEGEEKLFDEMLQRGVKPNNFTFSTMVNCA---- 217

Query: 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS 296
             ++ +E FE+M   G  PD +T SA++  YA S  V++ +SLY+R +A  W  D   FS
Sbjct: 218 --NKPVELFEKMSGFGYEPDGITCSAMVYAYALSNNVDKAVSLYDRAIAEKWCLDAATFS 275

Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356
            L KM+  +G+YD    V QEMK LG +PN+V YNTLL AM KA K   A++++ EM  +
Sbjct: 276 ALIKMYSMAGNYDKCLKVYQEMKVLGAKPNVVTYNTLLGAMLKAQKHRQAKAIYKEMKSN 335

Query: 357 GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEA 416
           G++PD  T   L+++Y  A  +++AL +++ M+ N   M   LYN LL MCAD+G  + A
Sbjct: 336 GVSPDFITYACLLEVYTIAHCSEEALGVYKEMKGNGMDMTADLYNKLLAMCADVGYTDRA 395

Query: 417 ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
             +F +MK S  C+PD++++++M+ +Y   G V  A  +  EM + G    +   T L+ 
Sbjct: 396 AEIFYEMKSSGTCQPDSWTFSSMITMYSRSGKVSEAEGMLNEMIQSGFQPTIFVLTSLVH 455

Query: 477 CLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKL 536
           C GKA+R DD+V+VF   +D G+ P+D  C  LL+V++     E+ GK+  C+++AN KL
Sbjct: 456 CYGKAKRTDDVVKVFKQLLDLGIVPNDHFCCSLLNVLTQ-TPKEEYGKLTDCIEKANTKL 514

Query: 537 VAFLN-LIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYL 595
            + +  L+E+   G  + K+E    +   +   + P CNCLID+C   N+ ERA +LL L
Sbjct: 515 GSVVKYLVEEEGDG--DFKKEASEFLNSIDAKVKMPLCNCLIDLCVKLNVPERACDLLDL 572

Query: 596 GTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQLFLAETG 655
           G +  +YP + +K+  +WSL ++ LSVGAA TAL  W+  L+K +   E LP L    TG
Sbjct: 573 GLVLEIYPNIQSKSQTQWSLHLKELSVGAAMTALHVWINELSKALESGEDLPPLLGINTG 632

Query: 656 TGTHKFSQ-GLATAFASHVNKLAAPFRQSEGKAGCFVATREDLVSWVQARPS 706
            G  K+S+ GLA  F SH+ +L APF   E KAG F+ T+    SW+++R S
Sbjct: 633 KGKLKYSEKGLAGVFESHLKELHAPFH--EAKAGWFLVTKAAAKSWLESRGS 682


>gi|356557983|ref|XP_003547289.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic-like [Glycine max]
          Length = 707

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 232/618 (37%), Positives = 354/618 (57%), Gaps = 22/618 (3%)

Query: 92  STWVNPTKPRRSVLSLQRQKRSTYSYNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQ 151
           S WVNP  PR   L           Y+ R   L   A+ L+ C+ T++     +  +   
Sbjct: 88  SIWVNPKSPRAKHLWKN-------PYHARSSSLTKLAKSLDSCNPTQQHVSEILRVLGDN 140

Query: 152 PTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLAN 211
               +A++ILNS+     +    N+   +       + YNVT+K  R  R F+  E+L +
Sbjct: 141 VFESDAVVILNSMVNPYTALLAVNYFNQKIKPSRHVVLYNVTLKLFRASRDFEGAEKLFD 200

Query: 212 EMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG 271
           EM+   ++ +N T+ST++ CA +       +E FE+M   G  PD +T SA++  YA S 
Sbjct: 201 EMLQRGVKPNNFTFSTMVNCANK------PVELFEKMSGFGYEPDGITCSAMVYAYALSN 254

Query: 272 KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYN 331
            V++ +SLY+R +A  W  D  AFS L KM+  +G+YD    + QEMK LGV+PN+V YN
Sbjct: 255 NVDKAVSLYDRAIAEKWCLDAAAFSALIKMYSMAGNYDRCLKIYQEMKVLGVKPNVVTYN 314

Query: 332 TLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN 391
           TLL AM KA K   A++++ EM  +G++PD  T   L+++Y  A +++DAL +++ M+ N
Sbjct: 315 TLLGAMLKAEKHRQAKAIYKEMRSNGVSPDFITYACLLEVYTIAHYSEDALGVYKEMKGN 374

Query: 392 KWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDN 451
              M   LYN LL M AD+G ++ A  +F +M  S  C+PD++++ +++ IY   G V  
Sbjct: 375 GMDMTADLYNKLLAMYADMGYIDRAVEIFYEMNSSGTCQPDSWTFASLIAIYSRSGKVSE 434

Query: 452 AIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
           A  +  EM + G    +   T L+ C GKA+R DD+V+VF   ++ G+ P+D  C  LL+
Sbjct: 435 AEGMLNEMIQSGFQPTIFVLTSLVHCYGKAKRTDDVVKVFKQLLELGIVPNDHFCCSLLN 494

Query: 512 VVSLCETSEDVGKVITCLQQANPKLVAFLN-LIEDNSTG-FENIKEEFRNVIKDTEVDAR 569
           V++     E++GK+  C+++AN KL + +  L+E+   G F N   EF N I D EV  +
Sbjct: 495 VLTQA-PKEELGKLTDCIEKANTKLGSVVKYLVEEEGDGDFRNEVSEFLNSI-DAEV--K 550

Query: 570 RPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTAL 629
            P CNCLID+C   N+ ERA +LL LG +  +Y  + +K+  +WSL ++ LSVGAA TAL
Sbjct: 551 MPLCNCLIDLCVKLNVPERACDLLDLGLMLEIYKNIQSKSQTQWSLHLKELSVGAAMTAL 610

Query: 630 EEWMWTLAKIVLREEVLPQLFLAETGTGTHKFSQ-GLATAFASHVNKLAAPFRQSEGKAG 688
             W+  L+K +   E LP L    TG G HK+S+ GLA  F SH+ +L APF   E KAG
Sbjct: 611 HVWINDLSKALESGEDLPPLLGINTGKGKHKYSEKGLAGIFESHLKELNAPFH--EAKAG 668

Query: 689 CFVATREDLVSWVQARPS 706
            F+AT+    SW+++R S
Sbjct: 669 WFLATKAPAKSWLESRGS 686


>gi|224089793|ref|XP_002308814.1| predicted protein [Populus trichocarpa]
 gi|222854790|gb|EEE92337.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 221/647 (34%), Positives = 351/647 (54%), Gaps = 76/647 (11%)

Query: 62  LSLSEQLKPLSSTTLSPTKNDRTPLLSKPKSTWVNPTKPRRSVLSLQRQKRSTYSYNPRV 121
           +SL ++  P   T+      ++T   SK    WVNP   R S+L    +KRS   Y+ + 
Sbjct: 59  VSLQDEEIPRQETSKDSNFKEKTGSSSK-SYIWVNPKSSRASIL----RKRS---YDAKY 110

Query: 122 RDLKLFARKLNDCDNTEEAFLRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQN 181
             L   A+ LN C                 P +++ L +L+    ++K+           
Sbjct: 111 TSLVNAAKYLNSC----------------SPNKDDVLDVLSEFDVFRKA----------- 143

Query: 182 LFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEA 241
                              R     E+L +EM+   ++ DN T+STII+CA+ CNL D+A
Sbjct: 144 -------------------RDLDKAEKLFDEMLERGVKPDNFTFSTIISCARLCNLADKA 184

Query: 242 IEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKM 301
           +EWFE+M   GL PD+VT+S ++D Y ++G VE+ LSLY+R     W+ D   FS L ++
Sbjct: 185 VEWFEKMPSFGLEPDDVTFSTMIDSYGRAGNVEKALSLYDRARTGEWRLDATPFSTLIRI 244

Query: 302 FGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD 361
           +  + ++DG     +EMK+LGV+PNLV+Y  LL+ MG+A +P   +  + +++++GL+P 
Sbjct: 245 YKVARNFDGCLNFYEEMKALGVKPNLVIYKILLDDMGRAKRPWQVKKFYQDIIDNGLSPS 304

Query: 362 EKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFE 421
             T  AL+  YG+AR+  DA +++  M+E                    G   E+  +FE
Sbjct: 305 FVTYAALLHAYGRARYGDDAFKIYREMKEK-------------------GFGIESVEIFE 345

Query: 422 DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
           DMK S   KPD++++++M+ I+   G V  A     EM E G   N+   T LIQC GKA
Sbjct: 346 DMK-SSGIKPDSWTFSSMITIFSCCGKVSEAENTLNEMFEAGFQPNIFILTSLIQCYGKA 404

Query: 482 RRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLN 541
           +RIDD+V+ F    D  + PDDR CGCLL+V++    +E++ K++ C+++ANPKL   + 
Sbjct: 405 QRIDDVVKTFNRIFDWVITPDDRFCGCLLNVMTQT-PNEELSKLVKCVERANPKLGYVVK 463

Query: 542 LIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLYGL 601
           L+ +      N K E  ++      + ++ +CNCLID+C   N+ ER+ ELL LG    +
Sbjct: 464 LLVEEQDSEGNFKNEATDLFDSISTEVKKAYCNCLIDLCIKLNMLERSWELLDLGLTLEI 523

Query: 602 YPGLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQLFLAETGTGTHKF 661
           Y  + ++T  +WSL+++SLS GAA TAL  WM  L+K++   E LP L    TG G  K+
Sbjct: 524 YTNIMSRTSTQWSLNLKSLSPGAALTALHIWMNDLSKVLEAGEQLPPLLGMNTGHGKRKY 583

Query: 662 SQ-GLATAFASHVNKLAAPFRQSEGKAGCFVATREDLVSWVQARPSS 707
           S+ GLA    S++ +L +PF ++  K G F+ T+    SW+++R S+
Sbjct: 584 SEKGLANVLESYLKELNSPFHEAPDKVGWFLTTKVAAESWLESRKST 630


>gi|125585400|gb|EAZ26064.1| hypothetical protein OsJ_09917 [Oryza sativa Japonica Group]
          Length = 552

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 206/536 (38%), Positives = 315/536 (58%), Gaps = 26/536 (4%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           E I YNV +K+LR  R++   E L  EM+   ++ DN T+ST+I+CA+ C +  +A+EWF
Sbjct: 24  EVILYNVALKALRKRRRWSDAEALWEEMLREGVQPDNATFSTVISCARACGMPGKAVEWF 83

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG-----WKPDP------IA 294
           E+M   G  PD +TYSA++D Y ++           RG   G       P P      + 
Sbjct: 84  EKMPDFGCSPDMLTYSAVIDAYGRA-----------RGRRDGPPACTTAPAPRNGSWTVI 132

Query: 295 FSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMV 354
            + + ++   SG++DG   V +EMK+ GV+PNLVVYNT+L+AMG+A +P + +++  E+V
Sbjct: 133 CATVIRVHSSSGNFDGALNVFEEMKAAGVKPNLVVYNTVLDAMGRAMRPWVVKTIHRELV 192

Query: 355 ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
                P++ T   L+  Y +AR+ +DA+ ++  M++    +D +LYN LL+MCADIG VE
Sbjct: 193 SQEAVPNKATYCCLLHAYTRARYGEDAMAVYRVMKDEVMDIDVVLYNMLLSMCADIGYVE 252

Query: 415 EAERLFEDMKLS--DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
           EAE +F DMK S     KPD++SY++M+ +Y   GNV  A  +  EM E G   N+   T
Sbjct: 253 EAEEIFRDMKASMDSRSKPDSWSYSSMVTLYSCTGNVAGAEGILNEMVEAGFKPNIFILT 312

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQA 532
            LI+C GKA R DD+VR F +  D G+ PDDR CGCLL+V +    ++++GKVI C+ ++
Sbjct: 313 SLIRCYGKAGRTDDVVRSFAMLEDLGITPDDRFCGCLLTVAA-GTPADELGKVIGCIDRS 371

Query: 533 NPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHEL 592
           + +L A + L+ D +   E ++E    ++       R P+CNCL+D+  N +  E+A  L
Sbjct: 372 SAQLGAVVRLLVDAAAPSEPLREAAGELLGGARGVVRMPYCNCLMDLAVNLSQMEKACAL 431

Query: 593 LYLGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQLFLA 652
           L +    G+Y  +  +T  +WSL +R LSVGAA T L  WM  L   +   + LP L   
Sbjct: 432 LDVALRLGIYSNVQTRTQTQWSLHLRGLSVGAALTTLHVWMSDLYAALQAGDELPPLLGI 491

Query: 653 ETGTGTHKFS-QGLATAFASHVNKLAAPFRQSEGKAGCFVATREDLVSWVQARPSS 707
            TG G + +S +GLAT F SH+ +L APF ++  KAG F+ T      W++ + S+
Sbjct: 492 HTGQGKNTYSYKGLATVFESHLKELDAPFHEAPDKAGWFLTTSVAARHWLETKKSA 547



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/217 (22%), Positives = 96/217 (44%), Gaps = 9/217 (4%)

Query: 318 MKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARW 377
           +++  V+  +++YN  L+A+ K  +   A +L++EM+  G+ PD  T + +I        
Sbjct: 16  LRNAEVRKEVILYNVALKALRKRRRWSDAEALWEEMLREGVQPDNATFSTVISCARACGM 75

Query: 378 AKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYT 437
              A+E +E+M +     D + Y+ +++            R       +    P N S+T
Sbjct: 76  PGKAVEWFEKMPDFGCSPDMLTYSAVIDAYG-----RARGRRDGPPACTTAPAPRNGSWT 130

Query: 438 AM----LNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGV 493
            +    + ++ S GN D A+ +FEEM   GV  N++    ++  +G+A R   +  +   
Sbjct: 131 VICATVIRVHSSSGNFDGALNVFEEMKAAGVKPNLVVYNTVLDAMGRAMRPWVVKTIHRE 190

Query: 494 SIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQ 530
            + +   P+     CLL   +     ED   V   ++
Sbjct: 191 LVSQEAVPNKATYCCLLHAYTRARYGEDAMAVYRVMK 227



 Score = 48.5 bits (114), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 56/107 (52%), Gaps = 1/107 (0%)

Query: 376 RWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYS 435
           R A   L LW  +R  +   + ILYN  L          +AE L+E+M L +  +PDN +
Sbjct: 4   RPAAVVLALWWFLRNAEVRKEVILYNVALKALRKRRRWSDAEALWEEM-LREGVQPDNAT 62

Query: 436 YTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKAR 482
           ++ +++   + G    A+E FE+M + G + +++  + +I   G+AR
Sbjct: 63  FSTVISCARACGMPGKAVEWFEKMPDFGCSPDMLTYSAVIDAYGRAR 109


>gi|302789998|ref|XP_002976767.1| hypothetical protein SELMODRAFT_105248 [Selaginella moellendorffii]
 gi|300155805|gb|EFJ22436.1| hypothetical protein SELMODRAFT_105248 [Selaginella moellendorffii]
          Length = 669

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 189/555 (34%), Positives = 320/555 (57%), Gaps = 6/555 (1%)

Query: 155 ENALLILNSLKFWQKSYFFFNWIKSQ-NLFPMETIFYNVTMKSLRFGRQFQLIEQLANEM 213
           +N + +LN++  W+K+  FF W+K++  L+ +    YNV +K LR GRQ +L E+L  EM
Sbjct: 110 KNIVTVLNNINRWEKALAFFEWLKARPELYEINRYTYNVMLKILRNGRQLELSEKLVEEM 169

Query: 214 VSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKV 273
               I+ DN T+ST+I CAKRC   +EA++WFERM   G++PDEVTY++++D+Y + G+V
Sbjct: 170 TGRGIQPDNYTFSTLINCAKRCRQPEEALKWFERMKSEGIVPDEVTYNSVIDMYGRVGRV 229

Query: 274 EEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTL 333
            E + LYE+  +  WK D + +  +  ++  +GDY  I  ++QEM+  G  PN V+ NTL
Sbjct: 230 NEAVELYEKLKSVNWKLDTVTYGAIANVYARAGDYQSIMQLVQEMRDSGSSPNAVIMNTL 289

Query: 334 LEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKW 393
           +  + KAGK   A+ +F+EM  SG++P   TL+ L+++Y +      A E++E ++   W
Sbjct: 290 MGTLSKAGKVNQAKKVFNEMRTSGVSPTPVTLSILVEMYTRVGAYDQAFEVYETLKTEGW 349

Query: 394 PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAI 453
             D  +YN+L+  C + G VE+AE + ++MK +  C PD+ +Y   +N Y + G VD A 
Sbjct: 350 KCDVAVYNSLMKACVEGGRVEQAEDILKEMKRAG-CNPDHLTYRTAMNTYATKGMVDPAR 408

Query: 454 ELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRG-VKPDDRLCGCLLSV 512
            +F+++  L    +    T +I+    A  I+   ++F   ++ G   PD+R+ G LLS 
Sbjct: 409 RMFDKVVALNGKPDTPLFTVMIRACKLAGEIEQASKIFDEMMESGCCSPDERVSGMLLSC 468

Query: 513 VSLCETSEDVGKVITCLQQANPKLVAFLNLI--EDNSTGFENIKEEFRNVIKD-TEVDAR 569
           +++ ++ ++   ++ CL + N  L   ++ I  ++     + + E     I D  E D+R
Sbjct: 469 MAMAKSDDERLAILDCLDKFNAPLHELMSAIVRKEEPRSRDEVAEMVEKFISDYPETDSR 528

Query: 570 RPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTAL 629
           +P CNCLIDIC +  +   AH++  +G   G Y GL       W L++R+LS+ AA+ A+
Sbjct: 529 KPLCNCLIDICSSVGMKHAAHKIFAMGVAVGAYDGLQTNLPSLWRLNLRTLSMPAAECAI 588

Query: 630 EEWMWTLAKIVLREEVLPQLFLAETGTGTHKFSQGLATAFASHVNKLAAPFRQSEGKAGC 689
           E W+ +L   V   + LP+  + ETG G  +  Q L     + + KL APF ++   AG 
Sbjct: 589 EAWVSSLKAAVREGDELPEDLIIETGVGRVRSGQRLNPIVGTLLKKLGAPFTENTEPAGY 648

Query: 690 FVATREDLVSWVQAR 704
           + +T   + +W++AR
Sbjct: 649 YCSTGAAVEAWIKAR 663


>gi|302782654|ref|XP_002973100.1| hypothetical protein SELMODRAFT_442013 [Selaginella moellendorffii]
 gi|300158853|gb|EFJ25474.1| hypothetical protein SELMODRAFT_442013 [Selaginella moellendorffii]
          Length = 674

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 189/555 (34%), Positives = 319/555 (57%), Gaps = 6/555 (1%)

Query: 155 ENALLILNSLKFWQKSYFFFNWIKSQ-NLFPMETIFYNVTMKSLRFGRQFQLIEQLANEM 213
           +N + +LN++  W+K+  FF W+K++  L+ +    YNV +K LR GRQ +L E+L  EM
Sbjct: 110 KNIVTVLNNINRWEKALAFFEWLKARPELYEINRYTYNVMLKILRNGRQLELSEKLVEEM 169

Query: 214 VSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKV 273
               I+ DN T+ST+I CAKRC   +EA++WFERM   G++PDEVTY++++D+Y + G+V
Sbjct: 170 TGRGIQPDNYTFSTLINCAKRCRQPEEALKWFERMKSEGIVPDEVTYNSVIDMYGRVGRV 229

Query: 274 EEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTL 333
            E + LYE+  +  WK D + +  +  ++  +GDY  I  ++QEM+  G  PN V+ NTL
Sbjct: 230 NEAVELYEKLKSVNWKLDTVTYGAIANVYARAGDYQSIIQLVQEMRDSGSSPNAVIMNTL 289

Query: 334 LEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKW 393
           +  + KAGK   A+ +F+EM  SG++P   TL+ L+++Y +      A E++E ++   W
Sbjct: 290 MGTLSKAGKVNQAKKVFNEMRTSGVSPTPVTLSILVEMYTRVGAYDQAFEVYETLKTEGW 349

Query: 394 PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAI 453
             D  +YN+L+  C + G VE+AE + ++MK +  C PD+ +Y   +N Y + G VD A 
Sbjct: 350 KCDVAVYNSLMKACVEGGRVEQAEDILKEMKRAG-CNPDHLTYRTAMNTYATKGMVDPAR 408

Query: 454 ELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRG-VKPDDRLCGCLLSV 512
            +F+++  L    +    T +I+    A  I+   ++F   ++ G   PD+R+ G LLS 
Sbjct: 409 RMFDKVVALNGKPDTPLFTVMIRACKLAGEIEQASKIFDEMMESGCCSPDERVSGMLLSC 468

Query: 513 VSLCETSEDVGKVITCLQQANPKLVAFLNLI--EDNSTGFENIKEEFRNVIKD-TEVDAR 569
           +++ +  ++   ++ CL + N  L   ++ I  ++     + + E     I D  E D+R
Sbjct: 469 MAMAKNDDERLAILDCLDKFNAPLHELMSAIVRKEEPRSRDEVAEMVEKFISDYPETDSR 528

Query: 570 RPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTAL 629
           +P CNCLIDIC +  +   AH++  +G   G Y GL       W L++R+LS+ AA+ A+
Sbjct: 529 KPLCNCLIDICSSVGMKHAAHKIFAMGVAVGAYDGLQTNLPSLWRLNLRTLSMPAAECAI 588

Query: 630 EEWMWTLAKIVLREEVLPQLFLAETGTGTHKFSQGLATAFASHVNKLAAPFRQSEGKAGC 689
           E W+ +L   V   + LP+  + ETG G  +  Q L     + + KL APF ++   AG 
Sbjct: 589 EAWVSSLKAAVREGDELPEDLIIETGVGRVRSGQRLNPIVGTLLKKLGAPFTENTEPAGY 648

Query: 690 FVATREDLVSWVQAR 704
           + +T   + +W++AR
Sbjct: 649 YCSTGAAVEAWIKAR 663


>gi|168054024|ref|XP_001779433.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162669118|gb|EDQ55711.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 570

 Score =  366 bits (939), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 179/550 (32%), Positives = 317/550 (57%), Gaps = 4/550 (0%)

Query: 156 NALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVS 215
           + + ILNSLK W+++   F W+++++   +    YNV +K LR GRQ++  +Q+A +M +
Sbjct: 12  DVVAILNSLKSWRQALLLFRWLRAEHSSSLNIYTYNVMLKVLRRGRQWEFSQQIAEDMAN 71

Query: 216 NEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEE 275
            ++  DNITYST+I+CA RCN  D A+ WF+RM++ G +PD VTYS ++DVY K GK +E
Sbjct: 72  ADVRPDNITYSTLISCANRCNYQDAAMAWFDRMHEAGCVPDVVTYSTMIDVYGKMGKYDE 131

Query: 276 VLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLE 335
            ++LYER   +GWKPD + +  + ++FG +G       + +EMK  GVQP+ +VYN ++ 
Sbjct: 132 AIALYERVKQAGWKPDKVTYGTMVRLFGRAGYIRAAVSIFEEMKGSGVQPDAIVYNIMIA 191

Query: 336 AMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPM 395
            +G+AG+ G A  +F+EM   G+ P+  TL+ +++ Y +     + LE+++R+R+     
Sbjct: 192 CLGRAGRMGHALKVFEEMEREGVKPNAVTLSTVMETYSRCGNVMEGLEVFQRLRQGV-AC 250

Query: 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIEL 455
           D I+YN +L MC + GL  EAE+   +M  S + +P++++Y  M+++Y   G    A   
Sbjct: 251 DVIVYNAVLKMCREAGLASEAEQYLREMTESGH-QPNDWTYRNMISVYAKKGMAVEAHRT 309

Query: 456 FEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSL 515
           F +M E G  I+VM  T L+Q  G A+  + +  +          PD+RLC  +L+++  
Sbjct: 310 FSQMVEAGYQIDVMAYTSLLQAYGNAKEYNKVQEILDEMTSVNCAPDERLCCVILNLLDS 369

Query: 516 CETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNC 575
           C+T E++G + +CL+  +  +   +  I + +     ++ E ++++ D   +A +P CN 
Sbjct: 370 CDTDEELGILRSCLRMCSSTMDTIVGQIFEENLVLRELRGELQSLLSDITEEAHKPICNS 429

Query: 576 LIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALEEWMWT 635
           L+ +  ++     + +LL L  + G+Y GL  K+   WSL +RSLS GAA  AL  W+ +
Sbjct: 430 LMQLSWHKGDRNHSFQLLSLFRVLGVYTGLQTKSPTMWSLHLRSLSTGAAHCALLSWLSS 489

Query: 636 LAKIVLREEVLPQLFLAETGTGTHKFSQG--LATAFASHVNKLAAPFRQSEGKAGCFVAT 693
           +   +   + LP   + ETG G    +    L    +S + + ++PF++   +     A+
Sbjct: 490 VRYAIKEGQELPGRIIIETGVGNQLNADEFRLIVVISSLLKECSSPFKECADRKDWLEAS 549

Query: 694 REDLVSWVQA 703
             D+  W+++
Sbjct: 550 GVDVTQWLES 559


>gi|168049914|ref|XP_001777406.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671255|gb|EDQ57810.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 570

 Score =  341 bits (875), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 175/549 (31%), Positives = 308/549 (56%), Gaps = 4/549 (0%)

Query: 156 NALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVS 215
           + + ILN+LK W+ +   F W++++  F +    YNV +K LR G+Q++L +Q+A +M++
Sbjct: 12  DVVAILNTLKSWKVALSLFKWLQAEQNFNLNIYTYNVMLKVLRRGQQWELSQQIAEDMIN 71

Query: 216 NEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEE 275
             I  DNITYST+I+CA RCN  D A+ WF+RM+    +PD VTYS ++DVY K GK +E
Sbjct: 72  AGIRPDNITYSTLISCANRCNYQDAAMAWFDRMHDAQCVPDAVTYSTMIDVYGKVGKYDE 131

Query: 276 VLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLE 335
            ++LYE    SGWKPD + +  + ++FG +G       +  EMK  G+QP  VVYN ++ 
Sbjct: 132 AVALYESVKKSGWKPDKVTYGTMVRLFGRAGYISAAVSIFDEMKGSGIQPGSVVYNIMIS 191

Query: 336 AMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPM 395
            +G+AG+ G A  +F EM ++G+ P+  TL+ +++IY ++    + L ++  MR++    
Sbjct: 192 CLGRAGRMGHALKVFQEMKQAGVKPNAVTLSTVMEIYSRSGKVMEGLGIFHHMRQDL-AC 250

Query: 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIEL 455
           D I+YN ++ MC + GLV EAE+   +M    + +P++++Y  M+++Y   G    A  +
Sbjct: 251 DIIVYNAVIKMCREAGLVPEAEQYLREMVEYGH-QPNDWTYRNMISLYAKNGMAVEAQRM 309

Query: 456 FEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSL 515
           F ++ E G   +VM  T L+Q  G A+  + +  +    +     PD+RL   +L+++  
Sbjct: 310 FSQLVEAGYQPDVMSYTSLLQGYGNAKDYEKVQEILHEMVSANCAPDERLWCVILNLLDA 369

Query: 516 CETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNC 575
           C+T  +   + +CL+  NP +   +  I + +   + + +  ++++ D   +A +P CN 
Sbjct: 370 CDTDVEFEILRSCLRMCNPTMDNIVGHIFEENLVLKKLGDGLQSLLSDMAEEAHKPICNS 429

Query: 576 LIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALEEWMWT 635
           L+ +  ++     A +LL L    G+Y GL  K+   WSL ++SLS GAA  AL  W+ +
Sbjct: 430 LLQLIWHKGDRNYAFKLLSLFCSSGVYTGLQTKSSIMWSLHLKSLSTGAAHCALLSWLSS 489

Query: 636 LAKIVLREEVLPQLFLAETGTGTHKFSQG--LATAFASHVNKLAAPFRQSEGKAGCFVAT 693
           +   +   + LP  F+ ETG G    +    L    +S + +  +PF +   +     A+
Sbjct: 490 VRYAIQEGQELPSRFMIETGVGNQLNADELRLVVVISSLLKEFTSPFIECVDRKDWLEAS 549

Query: 694 REDLVSWVQ 702
             D+  W++
Sbjct: 550 GVDVRQWLE 558


>gi|302791627|ref|XP_002977580.1| hypothetical protein SELMODRAFT_107283 [Selaginella moellendorffii]
 gi|300154950|gb|EFJ21584.1| hypothetical protein SELMODRAFT_107283 [Selaginella moellendorffii]
          Length = 555

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 179/550 (32%), Positives = 305/550 (55%), Gaps = 10/550 (1%)

Query: 164 LKFWQKSYFFFNWIKSQNLFPMETIF-YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDN 222
           ++ W+++  FF W +S+      T+F YN+ +K LR G Q+ L E L  EM+   I  DN
Sbjct: 1   MRDWKEALDFFRWARSRRDVCEITVFAYNMMLKLLRDGEQWSLSEVLLKEMLEERIMPDN 60

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
            T+S  ++C+KRC+  ++AI WF R+ +TG+  D VTYSA++D+Y K+G+  E + LY+ 
Sbjct: 61  YTFSIFVSCSKRCDRAEDAIAWFHRLRETGVSFDGVTYSAMIDLYGKAGRTAEAMDLYQT 120

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
              + WKPD ++F V+  ++   GDY  I  + ++M+   ++PN+V++NTL+  +G+AGK
Sbjct: 121 MRKNNWKPDLVSFGVIANVYSRVGDYQAILRLFRDMEQAEIKPNVVLFNTLIGTLGRAGK 180

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
             LA+ +FDEM   GL P E TL+ LI +Y K      AL++++ +++ KW +D ++YNT
Sbjct: 181 VTLAKGMFDEMATYGLEPSEITLSILIDMYTKVGALDKALDVYDTIKQKKWKLDVLVYNT 240

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
           LL  C + G ++ AE L  +M++     PD+ +Y  ++N+Y + G V     +F+++  L
Sbjct: 241 LLKSCVESGNIQRAESLIAEMEMEKQW-PDHMTYGILMNVYATKGMVAEVRAMFDKLKNL 299

Query: 463 GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDV 522
            V       T LI+   +A   D +  +F   +  G   ++R+ G L+S  S  + S++ 
Sbjct: 300 AVFPKAAFYTMLIKASKQAGDFDRIPGIFDEMVANGCSVNERMSGMLVSCASSSQISDET 359

Query: 523 G-KVITCLQQANPKLVAFLN---LIEDNSTGFENIKEEFRN-VIKDTEVDARRPFCNCLI 577
              V+ C+++  P+L   L+   ++      F++I  E    ++++    +RRP CN +I
Sbjct: 360 RLGVLECVKKIKPRLHELLSRLLVLAKEDDDFDDIASETTEFLLREITAPSRRPMCNAVI 419

Query: 578 DICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLA 637
           D C        A  +L  G   GLY GLH      W L++R+LS   A+ ALE W+ +LA
Sbjct: 420 DFCCVLGSRNAARAILSSGVSAGLYHGLHTTLPSLWQLNLRTLSFAGAECALEAWIESLA 479

Query: 638 KIVLREEVLPQLFLAETGTGTHK---FSQGLATAFASHVNKLAAPFRQSEGKAGCFVATR 694
                 +  P+  + ETGTG  K    S  L+      +  + +PF ++    G F+A+ 
Sbjct: 480 TAAENGDEFPEDVMVETGTGRAKEATNSVSLSEFVGGVLKGMDSPFEENRRPGGYFIASG 539

Query: 695 EDLVSWVQAR 704
           E   +W+Q+R
Sbjct: 540 EAAKAWLQSR 549


>gi|302786806|ref|XP_002975174.1| hypothetical protein SELMODRAFT_10825 [Selaginella moellendorffii]
 gi|300157333|gb|EFJ23959.1| hypothetical protein SELMODRAFT_10825 [Selaginella moellendorffii]
          Length = 555

 Score =  323 bits (829), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 182/554 (32%), Positives = 308/554 (55%), Gaps = 10/554 (1%)

Query: 160 ILNSLKFWQKSYFFFNWIKSQNLFPMETIF-YNVTMKSLRFGRQFQLIEQLANEMVSNEI 218
           +L  ++ W+++  FF W +S+      T+F YN+ +K LR G Q+ L E+L  EM+   I
Sbjct: 1   VLGGMRDWKEALDFFRWARSRRDVCEITVFAYNMMLKLLRDGEQWSLSEELLKEMLEERI 60

Query: 219 ELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS 278
             DN T+S  ++C+KRC+  ++AI WF R+ +TG+  D VTYSA++D+Y K+G+  E + 
Sbjct: 61  MPDNYTFSIFVSCSKRCDQAEDAIAWFHRLRETGVSFDGVTYSAMIDLYGKAGRTAEAMD 120

Query: 279 LYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMG 338
           LY+    + WKPD ++F V+  ++   GDY  I  + ++M+   ++PN+V++NTL+  +G
Sbjct: 121 LYQTMRKNNWKPDLVSFGVIANVYSRVGDYQAILRLFRDMEQAEIKPNVVLFNTLIGTLG 180

Query: 339 KAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFI 398
           +AGK  LA+ +FDEM   GL P E TL+ LI +Y K      AL++++ +++ KW +D +
Sbjct: 181 RAGKVTLAKGMFDEMASYGLEPSEITLSILIDMYTKVGALDKALDVYDTIKQKKWKLDVL 240

Query: 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458
           +YNTLL  C + G ++ AE L  +M+      PD+ +Y  ++N+Y + G V     +F++
Sbjct: 241 VYNTLLKSCVESGNIQRAESLIAEMEREKQW-PDHMTYGILMNVYATKGMVAEVRAMFDK 299

Query: 459 MSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCET 518
           +  L V       T LI+   +A   D +  +F   I  G   ++R+ G L+S  S  + 
Sbjct: 300 LKNLAVFPKAAFYTMLIKASKQAGDFDRIPGIFDEMIANGCSVNERMSGMLVSCASSSQI 359

Query: 519 SEDVG-KVITCLQQANPKLVAFLN---LIEDNSTGFENIKEEFRN-VIKDTEVDARRPFC 573
           S++    V+ C+++  P+L   L+   ++      F++I  E    ++++    +RRP C
Sbjct: 360 SDETRLGVLECVKKIKPRLHELLSRLLVLAKEDDDFDDIASETTEFLLREITAPSRRPMC 419

Query: 574 NCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALEEWM 633
           N +ID C        A  +L  G   GLY GLH      W L++R+LS  AA+ ALE W+
Sbjct: 420 NAVIDFCCVLGSRNAARAILSSGVSAGLYHGLHTTLPSLWQLNLRTLSFAAAECALEAWI 479

Query: 634 WTLAKIVLREEVLPQLFLAETGTGTHK---FSQGLATAFASHVNKLAAPFRQSEGKAGCF 690
            +LA      +  P+  + ETGTG  K    S  L+      +  + +PF ++    G F
Sbjct: 480 ESLATAAENGDEFPEDLMVETGTGRAKEATNSVSLSEFVGGVLKGMDSPFEENRRPGGYF 539

Query: 691 VATREDLVSWVQAR 704
           +A+ E   +W+Q+R
Sbjct: 540 IASGEAAKAWLQSR 553


>gi|218192336|gb|EEC74763.1| hypothetical protein OsI_10529 [Oryza sativa Indica Group]
          Length = 397

 Score =  302 bits (773), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 158/393 (40%), Positives = 239/393 (60%), Gaps = 4/393 (1%)

Query: 318 MKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARW 377
           MK+ GV+PNLVVYNT+L+AMG+A +P + +++  E+V     P++ T   L+  Y +AR+
Sbjct: 1   MKAAGVKPNLVVYNTVLDAMGRAMRPWVVKTIHRELVSQEAVPNKATYCCLLHAYTRARY 60

Query: 378 AKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS--DYCKPDNYS 435
            +DA+ ++  M++    +D +LYN LL+MCADIG VEEAE +F DMK S     KPD++S
Sbjct: 61  GEDAMAVYRVMKDEVMDIDVVLYNMLLSMCADIGYVEEAEEIFRDMKASMDSRSKPDSWS 120

Query: 436 YTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSI 495
           Y++M+ +Y   GNV  A  +  EM E G   N+   T LI+C GKA R DD+VR F +  
Sbjct: 121 YSSMVTLYSCTGNVAGAEGILNEMVEAGFKPNIFILTSLIRCYGKAGRTDDVVRSFAMLE 180

Query: 496 DRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKE 555
           D G+ PDDR CGCLL+V +    ++++GKVI C+ +++ +L A + L+ D +   E ++E
Sbjct: 181 DLGITPDDRFCGCLLTVAA-GTPADELGKVIGCIDRSSAQLGAVVRLLVDAAAPSEPLRE 239

Query: 556 EFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSL 615
               ++       R P+CNCL+D+  N +  E+A  LL +    G+Y  +  +T  +WSL
Sbjct: 240 AAGELLGGARGVVRMPYCNCLMDLAVNLSQMEKACALLDVALRLGIYSNVQTRTQTQWSL 299

Query: 616 DVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQLFLAETGTGTHKFS-QGLATAFASHVN 674
            +R LSVGAA T L  WM  L   +   + LP L    TG G + +S +GLAT F SH+ 
Sbjct: 300 HLRGLSVGAALTTLHVWMSDLYAALQAGDELPPLLGIHTGQGKNTYSYKGLATVFESHLK 359

Query: 675 KLAAPFRQSEGKAGCFVATREDLVSWVQARPSS 707
           +L APF ++  KAG F+ T      W++ + S+
Sbjct: 360 ELDAPFHEAPDKAGWFLTTSVAARHWLETKKSA 392



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 90/187 (48%), Gaps = 3/187 (1%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           + YN  + ++    +  +++ +  E+VS E   +  TY  ++    R    ++A+  +  
Sbjct: 11  VVYNTVLDAMGRAMRPWVVKTIHRELVSQEAVPNKATYCCLLHAYTRARYGEDAMAVYRV 70

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY---ERGVASGWKPDPIAFSVLGKMFGE 304
           M    +  D V Y+ +L + A  G VEE   ++   +  + S  KPD  ++S +  ++  
Sbjct: 71  MKDEVMDIDVVLYNMLLSMCADIGYVEEAEEIFRDMKASMDSRSKPDSWSYSSMVTLYSC 130

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
           +G+  G   +L EM   G +PN+ +  +L+   GKAG+       F  + + G+TPD++ 
Sbjct: 131 TGNVAGAEGILNEMVEAGFKPNIFILTSLIRCYGKAGRTDDVVRSFAMLEDLGITPDDRF 190

Query: 365 LTALIKI 371
              L+ +
Sbjct: 191 CGCLLTV 197


>gi|224138872|ref|XP_002326711.1| predicted protein [Populus trichocarpa]
 gi|222834033|gb|EEE72510.1| predicted protein [Populus trichocarpa]
          Length = 167

 Score =  215 bits (547), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 100/152 (65%), Positives = 117/152 (76%)

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANP 534
           +  LG+      LV+VF V+ID GVK DDR CGCLLSV SL + SEDV KV+ CLQQANP
Sbjct: 7   LSALGRLEESLTLVKVFNVAIDGGVKLDDRFCGCLLSVASLSDESEDVAKVLACLQQANP 66

Query: 535 KLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLY 594
           KLVA + L ED  T FE +KEEFR V+ D  ++ RRPFC CLIDICR R+L+ RAHELLY
Sbjct: 67  KLVALVKLFEDEETSFETLKEEFRAVVSDAAIETRRPFCKCLIDICRKRDLHGRAHELLY 126

Query: 595 LGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQ 626
           LG L+GLYP LH+KT+ EWSL+VRSLSVGAAQ
Sbjct: 127 LGILHGLYPDLHHKTVKEWSLNVRSLSVGAAQ 158


>gi|224089785|ref|XP_002308813.1| predicted protein [Populus trichocarpa]
 gi|222854789|gb|EEE92336.1| predicted protein [Populus trichocarpa]
          Length = 270

 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 95/227 (41%), Positives = 150/227 (66%), Gaps = 1/227 (0%)

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
           W+ D   FS L +++  +G++DG   V +EMK+LGV+PNLV+YN LL+AMG+A +P   +
Sbjct: 10  WRLDATTFSTLIRIYKVAGNFDGYLNVSEEMKALGVKPNLVIYNILLDAMGRAKRPWQVK 69

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
             + +++++GL+P   T  AL+  YG+AR+  DA +++  M+E    ++ +LYN++L MC
Sbjct: 70  KFYQDIIDNGLSPSFVTFAALLHAYGRARYGDDAFKIYREMKEKGLGLNVVLYNSILAMC 129

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
           AD+G V++A  +FEDMK S   KPD++++++M+ I+   G V        EM E G   N
Sbjct: 130 ADLGHVDKAVEIFEDMK-SSGIKPDSWTFSSMITIFSCCGKVSEVENTLNEMFEAGFQPN 188

Query: 468 VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVS 514
           +   T LIQC GKA+RIDD+V+ F    +  + PDDR CGCLL+V++
Sbjct: 189 IFILTSLIQCYGKAQRIDDVVKTFNRIFELVITPDDRFCGCLLNVMT 235



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 93/184 (50%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           + YN+ + ++   ++   +++   +++ N +    +T++ ++    R    D+A + +  
Sbjct: 50  VIYNILLDAMGRAKRPWQVKKFYQDIIDNGLSPSFVTFAALLHAYGRARYGDDAFKIYRE 109

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M + GL  + V Y++IL + A  G V++ + ++E   +SG KPD   FS +  +F   G 
Sbjct: 110 MKEKGLGLNVVLYNSILAMCADLGHVDKAVEIFEDMKSSGIKPDSWTFSSMITIFSCCGK 169

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
              +   L EM   G QPN+ +  +L++  GKA +       F+ + E  +TPD++    
Sbjct: 170 VSEVENTLNEMFEAGFQPNIFILTSLIQCYGKAQRIDDVVKTFNRIFELVITPDDRFCGC 229

Query: 368 LIKI 371
           L+ +
Sbjct: 230 LLNV 233



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 92/211 (43%), Gaps = 35/211 (16%)

Query: 215 SNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVE 274
           + E  LD  T+ST+I   K    FD  +   E M   G+ P+ V Y+ +LD   ++ +  
Sbjct: 7   TGEWRLDATTFSTLIRIYKVAGNFDGYLNVSEEMKALGVKPNLVIYNILLDAMGRAKRPW 66

Query: 275 EVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLL 334
           +V   Y+  + +G  P  + F+ L   +G +   D    + +EMK  G+  N+V+YN++L
Sbjct: 67  QVKKFYQDIIDNGLSPSFVTFAALLHAYGRARYGDDAFKIYREMKEKGLGLNVVLYNSIL 126

Query: 335 EAMGKAGKPGLARSLFDEMVESGLTPDEKT------------------------------ 364
                 G    A  +F++M  SG+ PD  T                              
Sbjct: 127 AMCADLGHVDKAVEIFEDMKSSGIKPDSWTFSSMITIFSCCGKVSEVENTLNEMFEAGFQ 186

Query: 365 -----LTALIKIYGKARWAKDALELWERMRE 390
                LT+LI+ YGKA+   D ++ + R+ E
Sbjct: 187 PNIFILTSLIQCYGKAQRIDDVVKTFNRIFE 217



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 49/223 (21%), Positives = 102/223 (45%), Gaps = 6/223 (2%)

Query: 361 DEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLF 420
           D  T + LI+IY  A      L + E M+      + ++YN LL+         + ++ +
Sbjct: 13  DATTFSTLIRIYKVAGNFDGYLNVSEEMKALGVKPNLVIYNILLDAMGRAKRPWQVKKFY 72

Query: 421 EDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK 480
           +D+ + +   P   ++ A+L+ YG     D+A +++ EM E G+ +NV+    ++     
Sbjct: 73  QDI-IDNGLSPSFVTFAALLHAYGRARYGDDAFKIYREMKEKGLGLNVVLYNSILAMCAD 131

Query: 481 ARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVA 538
              +D  V +F      G+KPD      ++++ S C    +V   +  + +A   P +  
Sbjct: 132 LGHVDKAVEIFEDMKSSGIKPDSWTFSSMITIFSCCGKVSEVENTLNEMFEAGFQPNIFI 191

Query: 539 FLNLIE--DNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDI 579
             +LI+    +   +++ + F N I +  +     FC CL+++
Sbjct: 192 LTSLIQCYGKAQRIDDVVKTF-NRIFELVITPDDRFCGCLLNV 233


>gi|356516744|ref|XP_003527053.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18900-like [Glycine max]
          Length = 882

 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 146/612 (23%), Positives = 257/612 (41%), Gaps = 62/612 (10%)

Query: 116 SYNPRVRDLKLFA------RKLNDCDNTEEAFLRAITEIPHQPTRENALLILN-SLKFWQ 168
           S+N   RDL + A      R   +  +  E     + ++   P  E AL  LN S+  +Q
Sbjct: 296 SFNKHTRDLNMPAGIAPTRRHFTNSGHVVEGVKDILKQLRWGPATEKALYNLNFSIDAYQ 355

Query: 169 KSYF------------FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSN 216
            +              FF W+K Q  F  +   Y   +  L   R+F  I +L  +MV +
Sbjct: 356 ANQILKQLQDHSVALSFFYWLKRQPGFWHDGHTYTTMVGILGRAREFGAINKLLEQMVKD 415

Query: 217 EIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV 276
             + + +TY+ +I    R N   EA+  F +M + G  PD VTY  ++D++AK+G ++  
Sbjct: 416 GCQPNVVTYNRLIHSYGRANYLGEALNVFNQMQEMGCEPDRVTYCTLIDIHAKAGFLDVA 475

Query: 277 LSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA 336
           +S+YER    G  PD   +SV+    G+SG+      +  EM   G  PN+V YN L+  
Sbjct: 476 MSMYERMQEVGLSPDTFTYSVMINCLGKSGNLSAAHRLFCEMVDQGCVPNIVTYNILIAL 535

Query: 337 MGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMD 396
             KA     A  L+ +M  +G  PD+ T + ++++ G   + ++A  ++  M++N W  D
Sbjct: 536 QAKARNYQTALKLYRDMQNAGFKPDKVTYSIVMEVLGYCGYLEEAEAVFFEMKQNNWVPD 595

Query: 397 FILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELF 456
             +Y  L+++                                    +G  GNV+ A E +
Sbjct: 596 EPVYGLLIDL------------------------------------WGKAGNVEKAWEWY 619

Query: 457 EEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLC 516
             M   G+  NV  C  L+    +  R+ D   +    +  G+ P  +    LLS  +  
Sbjct: 620 HAMLRAGLLPNVPTCNSLLSAFLRVHRLPDAYNLLQNMVTLGLNPSLQTYTLLLSCCTEA 679

Query: 517 ETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKE---EFRNVIKDTEVDARRPFC 573
           ++  D+G     +  +     AFL  +       +N+++   +F +++   + + +R   
Sbjct: 680 QSPYDMGFCCELMAVSGHPAHAFLQSMPAAGPDGQNVRDHVSKFLDLMHSEDREGKRGLV 739

Query: 574 NCLIDICRNRNLNERAHELLYLGTLYGLYP-GLHNKTLDEWSLDVRSLSVGAAQTALEEW 632
           + ++D      L E A  +  +     +YP  +  K+   W +++  +S G A TAL   
Sbjct: 740 DAVVDFLHKSGLKEEAGSVWEVAAQKNVYPDAIREKSTCYWLINLHVMSDGTAVTALSRT 799

Query: 633 MWTLAKIVLREEVLPQLFLAETGTGTHKFSQG---LATAFASHVNKLAAPFRQSEGKAGC 689
           +    + +L   V P      TG G      G   +  A    ++  + PF    G +GC
Sbjct: 800 LAWFRRQMLASGVGPNRIDIITGWGRRSRVTGSSLVRQAVQELLHVFSFPFFTENGNSGC 859

Query: 690 FVATREDLVSWV 701
           FV   E L  W+
Sbjct: 860 FVGCGEPLSQWL 871


>gi|413918172|gb|AFW58104.1| hypothetical protein ZEAMMB73_609509 [Zea mays]
          Length = 561

 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 114/345 (33%), Positives = 184/345 (53%), Gaps = 11/345 (3%)

Query: 131 LNDCDNTEEAFLRAI-TEIPHQPTRENALLILNSLKFWQKSYFFF--NWIKSQNLFPMET 187
           LN CD  E A    + + +P  P+ ++A+++LN     +         W         + 
Sbjct: 132 LNACDPDEAAIEAGLQSALPEPPSEQDAVIVLNMAIATRPEIVVLARRWFLGNAEVQKKV 191

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           I YNV +K LR  + +   E    +M+ + ++ DN  +STI +CA    L  + ++WF++
Sbjct: 192 ILYNVELKLLRKKQHWCETEAPWAKMLRHGMQPDNTIFSTINSCACAYGLLSKVVKWFDK 251

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M   G  PD +TYSA++D Y  +G  E  L    R  A  W+ DP+    + ++   SG+
Sbjct: 252 MSGFGCSPDWLTYSAVIDTYDHTGNFEAAL---RRARAEKWQLDPVLCCTVNEVHSTSGN 308

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
           ++    + +EMK+ GV PNLV+ NT L  MG A +P + +S+  EM++  +  ++ T   
Sbjct: 309 FNRALNLFKEMKATGVNPNLVMCNTRLYVMGHALQPWVVKSIHREMIDKQVQHNKVTYCC 368

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS- 426
           L+  Y +A + +DA+ ++  M++    MD +LYN LL+   DIG V+EAE +F DMK S 
Sbjct: 369 LLHAYTRAHYDEDAMAVYRLMKDEA--MDVMLYNMLLSRYVDIGYVDEAEEIFRDMKASM 426

Query: 427 -DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM-SELGVAINVM 469
            D  KPD +SY++ML  Y S  NV     +  EM  ELG  I+ +
Sbjct: 427 DDRSKPDKWSYSSMLRQYSSTANVLGVEGILNEMVEELGKVISCV 471



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 54/256 (21%), Positives = 97/256 (37%), Gaps = 40/256 (15%)

Query: 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
           +M   G+QP+  +++T+       G        FD+M   G +PD  T +A+I  Y    
Sbjct: 216 KMLRHGMQPDNTIFSTINSCACAYGLLSKVVKWFDKMSGFGCSPDWLTYSAVIDTYDHTG 275

Query: 377 WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY 436
             + AL    R R  KW +D +L       C  +                          
Sbjct: 276 NFEAALR---RARAEKWQLDPVL-------CCTVN------------------------- 300

Query: 437 TAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496
                ++ + GN + A+ LF+EM   GV  N++ C   +  +G A +   +  +    ID
Sbjct: 301 ----EVHSTSGNFNRALNLFKEMKATGVNPNLVMCNTRLYVMGHALQPWVVKSIHREMID 356

Query: 497 RGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDN-STGFENIKE 555
           + V+ +     CLL   +     ED   V   ++     ++ +  L+      G+ +  E
Sbjct: 357 KQVQHNKVTYCCLLHAYTRAHYDEDAMAVYRLMKDEAMDVMLYNMLLSRYVDIGYVDEAE 416

Query: 556 EFRNVIKDTEVDARRP 571
           E    +K +  D  +P
Sbjct: 417 EIFRDMKASMDDRSKP 432


>gi|15221893|ref|NP_173324.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|42571539|ref|NP_973860.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75151479|sp|Q8GYP6.1|PPR49_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18900
 gi|26450017|dbj|BAC42129.1| unknown protein [Arabidopsis thaliana]
 gi|28827402|gb|AAO50545.1| unknown protein [Arabidopsis thaliana]
 gi|332191657|gb|AEE29778.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332191658|gb|AEE29779.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 860

 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 167/729 (22%), Positives = 299/729 (41%), Gaps = 83/729 (11%)

Query: 13  LSIPKS---DTKRPIFLTKPT-----RRSHPIKINISCNSKSSENVAAESPNP------E 58
             +PKS   D  RPI   K +     RR H  KI     +K S      +P+       E
Sbjct: 164 FGLPKSCMVDPTRPISSVKSSNVKAIRREHFAKIYPRSAAKESSVGTTRNPSSNFRGAKE 223

Query: 59  TKTLSLSEQLKPLSSTTLS---PTKND----RTPLLSKPK--STWVNPTKPRRSVLSLQR 109
            +     +  + +S++ +    PT N+    RT +L +P   S    P+    S + + +
Sbjct: 224 AERTGFVKGFRQVSNSVVGKSLPTTNNTYGKRTSVLQRPHIDSNRFVPSGFSNSSVEMMK 283

Query: 110 QKRSTYSYNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTRENALL---------- 159
               T           L +R+  +  +  E     +      P  E AL           
Sbjct: 284 GPSGT----------ALTSRQYCNSGHIVENVSSVLRRFRWGPAAEEALQNLGLRIDAYQ 333

Query: 160 ---ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSN 216
              +L  +  +  +  FF W+K Q  F  +   Y   + +L   +QF  I +L +EMV +
Sbjct: 334 ANQVLKQMNDYGNALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRD 393

Query: 217 EIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV 276
             + + +TY+ +I    R N  +EA+  F +M + G  PD VTY  ++D++AK+G ++  
Sbjct: 394 GCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIA 453

Query: 277 LSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA 336
           + +Y+R  A G  PD   +SV+    G++G       +  EM   G  PNLV YN +++ 
Sbjct: 454 MDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDL 513

Query: 337 MGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMD 396
             KA     A  L+ +M  +G  PD+ T + ++++ G   + ++A  ++  M++  W  D
Sbjct: 514 HAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPD 573

Query: 397 FILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELF 456
             +Y  L+++    G VE+A + ++ M L    +P+  +  ++L+ +     +  A EL 
Sbjct: 574 EPVYGLLVDLWGKAGNVEKAWQWYQAM-LHAGLRPNVPTCNSLLSTFLRVNKIAEAYELL 632

Query: 457 EEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLC 516
           + M  LG+  ++   T L+ C    R                 K D   CG L++     
Sbjct: 633 QNMLALGLRPSLQTYTLLLSCCTDGRS----------------KLDMGFCGQLMA----- 671

Query: 517 ETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCL 576
            T       +  +  A P           +     N    F +++   + +++R   + +
Sbjct: 672 STGHPAHMFLLKMPAAGP-----------DGENVRNHANNFLDLMHSEDRESKRGLVDAV 720

Query: 577 IDICRNRNLNERAHELLYLGTLYGLYP-GLHNKTLDEWSLDVRSLSVGAAQTALEEWMWT 635
           +D        E A  +  +     ++P  L  K+   W +++  +S G A TAL   +  
Sbjct: 721 VDFLHKSGQKEEAGSVWEVAAQKNVFPDALREKSCSYWLINLHVMSEGTAVTALSRTLAW 780

Query: 636 LAKIVLREEVLPQLFLAETGTGTHKFSQGLA---TAFASHVNKLAAPFRQSEGKAGCFVA 692
             K +L     P      TG G      G +    A    +N   +PF    G +GCFV 
Sbjct: 781 FRKQMLASGTCPSRIDIVTGWGRRSRVTGTSMVRQAVEELLNIFGSPFFTESGNSGCFVG 840

Query: 693 TREDLVSWV 701
           + E L  W+
Sbjct: 841 SGEPLNRWL 849


>gi|356508608|ref|XP_003523047.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18900-like [Glycine max]
          Length = 879

 Score =  190 bits (482), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 145/612 (23%), Positives = 255/612 (41%), Gaps = 62/612 (10%)

Query: 116 SYNPRVRDLKLFA------RKLNDCDNTEEAFLRAITEIPHQPTRENALLILN-SLKFWQ 168
           S+N   RDL + A      R   +  +  E     + ++   P  E  L  LN S+  +Q
Sbjct: 293 SFNKHTRDLNMPAGIVPTKRHFTNSGHVVEVVKDILKQLRWGPATEKTLYNLNFSIDAYQ 352

Query: 169 KSYF------------FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSN 216
            +              FF W+K Q  F  +   Y   +  L   R+F  I +L  +MV +
Sbjct: 353 ANQILKQLQDHSVAVGFFCWLKRQPGFWHDGHTYTTMVGILGRAREFGAINKLLEQMVKD 412

Query: 217 EIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV 276
             + + +TY+ +I    R N   EA+  F +M + G  PD VTY  ++D++AK+G ++  
Sbjct: 413 GCQPNVVTYNRLIHSYGRANYLREALNVFNQMQEMGCEPDRVTYCTLIDIHAKAGFLDVA 472

Query: 277 LSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA 336
           +S+YER    G  PD   +SV+    G+SG+      +  EM   G  PN+V YN L+  
Sbjct: 473 MSMYERMQEVGLSPDTFTYSVMINCLGKSGNLSAAHRLFCEMVDQGCVPNIVTYNILIAL 532

Query: 337 MGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMD 396
             KA     A  L+ +M  +G  PD+ T + ++++ G   + ++A  ++  MR+N W  D
Sbjct: 533 QAKARNYQTALELYRDMQNAGFKPDKVTYSIVMEVLGHCGYLEEAEAVFFEMRQNHWVPD 592

Query: 397 FILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELF 456
             +Y  L+++                                    +G  GNV+ A E +
Sbjct: 593 EPVYGLLVDL------------------------------------WGKAGNVEKAWEWY 616

Query: 457 EEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLC 516
             M   G+  NV  C  L+    +  R+ D   +    +  G+ P  +    LLS  +  
Sbjct: 617 HTMLRAGLLPNVPTCNSLLSAFLRVHRLPDAYNLLQNMVTLGLNPSLQTYTLLLSCCTEA 676

Query: 517 ETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKE---EFRNVIKDTEVDARRPFC 573
           ++  D+G     +  +     AFL  +       +N+++   +F +++   + + +R   
Sbjct: 677 QSPYDMGFCCELMAVSGHPAHAFLQSMPAAGPDGQNVRDHVSKFLDLMHSEDREGKRGLV 736

Query: 574 NCLIDICRNRNLNERAHELLYLGTLYGLYP-GLHNKTLDEWSLDVRSLSVGAAQTALEEW 632
           + ++D      L E A  +  +     +YP  +  K+   W +++  +S G A TAL   
Sbjct: 737 DAVVDFLHKSGLKEEAGSVWEVAAQKNVYPDAVKEKSTCYWLINLHVMSDGTAVTALSRT 796

Query: 633 MWTLAKIVLREEVLPQLFLAETGTGTHKFSQG---LATAFASHVNKLAAPFRQSEGKAGC 689
           +    + +L   V P      TG G      G   +  A    ++  + PF      +GC
Sbjct: 797 LAWFRRQMLASGVGPNRIDIVTGWGRRSRVTGSSLVRQAVQELLHVFSFPFFTENSNSGC 856

Query: 690 FVATREDLVSWV 701
           FV   E L  W+
Sbjct: 857 FVGCGEPLSQWL 868


>gi|8778269|gb|AAF79278.1|AC068602_1 F14D16.2 [Arabidopsis thaliana]
          Length = 977

 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 167/729 (22%), Positives = 299/729 (41%), Gaps = 83/729 (11%)

Query: 13  LSIPKS---DTKRPIFLTKPT-----RRSHPIKINISCNSKSSENVAAESPNP------E 58
             +PKS   D  RPI   K +     RR H  KI     +K S      +P+       E
Sbjct: 281 FGLPKSCMVDPTRPISSVKSSNVKAIRREHFAKIYPRSAAKESSVGTTRNPSSNFRGAKE 340

Query: 59  TKTLSLSEQLKPLSSTTLS---PTKND----RTPLLSKPK--STWVNPTKPRRSVLSLQR 109
            +     +  + +S++ +    PT N+    RT +L +P   S    P+    S + + +
Sbjct: 341 AERTGFVKGFRQVSNSVVGKSLPTTNNTYGKRTSVLQRPHIDSNRFVPSGFSNSSVEMMK 400

Query: 110 QKRSTYSYNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTRENALL---------- 159
               T           L +R+  +  +  E     +      P  E AL           
Sbjct: 401 GPSGT----------ALTSRQYCNSGHIVENVSSVLRRFRWGPAAEEALQNLGLRIDAYQ 450

Query: 160 ---ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSN 216
              +L  +  +  +  FF W+K Q  F  +   Y   + +L   +QF  I +L +EMV +
Sbjct: 451 ANQVLKQMNDYGNALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRD 510

Query: 217 EIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV 276
             + + +TY+ +I    R N  +EA+  F +M + G  PD VTY  ++D++AK+G ++  
Sbjct: 511 GCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIA 570

Query: 277 LSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA 336
           + +Y+R  A G  PD   +SV+    G++G       +  EM   G  PNLV YN +++ 
Sbjct: 571 MDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDL 630

Query: 337 MGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMD 396
             KA     A  L+ +M  +G  PD+ T + ++++ G   + ++A  ++  M++  W  D
Sbjct: 631 HAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPD 690

Query: 397 FILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELF 456
             +Y  L+++    G VE+A + ++ M L    +P+  +  ++L+ +     +  A EL 
Sbjct: 691 EPVYGLLVDLWGKAGNVEKAWQWYQAM-LHAGLRPNVPTCNSLLSTFLRVNKIAEAYELL 749

Query: 457 EEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLC 516
           + M  LG+  ++   T L+ C    R                 K D   CG L++     
Sbjct: 750 QNMLALGLRPSLQTYTLLLSCCTDGRS----------------KLDMGFCGQLMA----- 788

Query: 517 ETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCL 576
            T       +  +  A P           +     N    F +++   + +++R   + +
Sbjct: 789 STGHPAHMFLLKMPAAGP-----------DGENVRNHANNFLDLMHSEDRESKRGLVDAV 837

Query: 577 IDICRNRNLNERAHELLYLGTLYGLYP-GLHNKTLDEWSLDVRSLSVGAAQTALEEWMWT 635
           +D        E A  +  +     ++P  L  K+   W +++  +S G A TAL   +  
Sbjct: 838 VDFLHKSGQKEEAGSVWEVAAQKNVFPDALREKSCSYWLINLHVMSEGTAVTALSRTLAW 897

Query: 636 LAKIVLREEVLPQLFLAETGTGTHKFSQGLA---TAFASHVNKLAAPFRQSEGKAGCFVA 692
             K +L     P      TG G      G +    A    +N   +PF    G +GCFV 
Sbjct: 898 FRKQMLASGTCPSRIDIVTGWGRRSRVTGTSMVRQAVEELLNIFGSPFFTESGNSGCFVG 957

Query: 693 TREDLVSWV 701
           + E L  W+
Sbjct: 958 SGEPLNRWL 966


>gi|334182677|ref|NP_001185030.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332191659|gb|AEE29780.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 886

 Score =  189 bits (481), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 167/729 (22%), Positives = 299/729 (41%), Gaps = 83/729 (11%)

Query: 13  LSIPKS---DTKRPIFLTKPT-----RRSHPIKINISCNSKSSENVAAESPNP------E 58
             +PKS   D  RPI   K +     RR H  KI     +K S      +P+       E
Sbjct: 164 FGLPKSCMVDPTRPISSVKSSNVKAIRREHFAKIYPRSAAKESSVGTTRNPSSNFRGAKE 223

Query: 59  TKTLSLSEQLKPLSSTTLS---PTKND----RTPLLSKPK--STWVNPTKPRRSVLSLQR 109
            +     +  + +S++ +    PT N+    RT +L +P   S    P+    S + + +
Sbjct: 224 AERTGFVKGFRQVSNSVVGKSLPTTNNTYGKRTSVLQRPHIDSNRFVPSGFSNSSVEMMK 283

Query: 110 QKRSTYSYNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTRENALL---------- 159
               T           L +R+  +  +  E     +      P  E AL           
Sbjct: 284 GPSGT----------ALTSRQYCNSGHIVENVSSVLRRFRWGPAAEEALQNLGLRIDAYQ 333

Query: 160 ---ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSN 216
              +L  +  +  +  FF W+K Q  F  +   Y   + +L   +QF  I +L +EMV +
Sbjct: 334 ANQVLKQMNDYGNALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRD 393

Query: 217 EIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV 276
             + + +TY+ +I    R N  +EA+  F +M + G  PD VTY  ++D++AK+G ++  
Sbjct: 394 GCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIA 453

Query: 277 LSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA 336
           + +Y+R  A G  PD   +SV+    G++G       +  EM   G  PNLV YN +++ 
Sbjct: 454 MDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDL 513

Query: 337 MGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMD 396
             KA     A  L+ +M  +G  PD+ T + ++++ G   + ++A  ++  M++  W  D
Sbjct: 514 HAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPD 573

Query: 397 FILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELF 456
             +Y  L+++    G VE+A + ++ M L    +P+  +  ++L+ +     +  A EL 
Sbjct: 574 EPVYGLLVDLWGKAGNVEKAWQWYQAM-LHAGLRPNVPTCNSLLSTFLRVNKIAEAYELL 632

Query: 457 EEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLC 516
           + M  LG+  ++   T L+ C    R                 K D   CG L++     
Sbjct: 633 QNMLALGLRPSLQTYTLLLSCCTDGRS----------------KLDMGFCGQLMA----- 671

Query: 517 ETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCL 576
            T       +  +  A P           +     N    F +++   + +++R   + +
Sbjct: 672 STGHPAHMFLLKMPAAGP-----------DGENVRNHANNFLDLMHSEDRESKRGLVDAV 720

Query: 577 IDICRNRNLNERAHELLYLGTLYGLYP-GLHNKTLDEWSLDVRSLSVGAAQTALEEWMWT 635
           +D        E A  +  +     ++P  L  K+   W +++  +S G A TAL   +  
Sbjct: 721 VDFLHKSGQKEEAGSVWEVAAQKNVFPDALREKSCSYWLINLHVMSEGTAVTALSRTLAW 780

Query: 636 LAKIVLREEVLPQLFLAETGTGTHKFSQGLA---TAFASHVNKLAAPFRQSEGKAGCFVA 692
             K +L     P      TG G      G +    A    +N   +PF    G +GCFV 
Sbjct: 781 FRKQMLASGTCPSRIDIVTGWGRRSRVTGTSMVRQAVEELLNIFGSPFFTESGNSGCFVG 840

Query: 693 TREDLVSWV 701
           + E L  W+
Sbjct: 841 SGEPLNRWL 849


>gi|297844848|ref|XP_002890305.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336147|gb|EFH66564.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 860

 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 131/546 (23%), Positives = 237/546 (43%), Gaps = 37/546 (6%)

Query: 160 ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIE 219
           +L  +  +  +  FF W+K Q  F  +   Y   + +L   +QF  I +L +EMV +  +
Sbjct: 337 VLKQMNDYGNALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQ 396

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
            + +TY+ +I    R N  +EA+  F +M + G  PD VTY  ++D++AK+G ++  + +
Sbjct: 397 PNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDM 456

Query: 280 YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
           Y+R  A G  PD   +SV+    G++G       +  EM   G  PNLV YN +++   K
Sbjct: 457 YQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAK 516

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
           A     A  L+ +M  +G  PD+ T + ++++ G   + ++A  ++  M++  W  D  +
Sbjct: 517 ARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPV 576

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           Y  L+++    G VE+A + ++ M L     P+  +  ++L+ +     +  A EL + M
Sbjct: 577 YGLLVDLWGKAGNVEKAWQWYQAM-LHAGLLPNVPTCNSLLSTFLRVNKIAEAYELLQNM 635

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETS 519
             LG+  ++   T L+ C    R                 K D   CG L++      T 
Sbjct: 636 LALGLRPSLQTYTLLLSCCTDGRS----------------KLDMGYCGQLMA-----STG 674

Query: 520 EDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDI 579
                 +  +  A P           N     N    F +++   + +++R   + ++D 
Sbjct: 675 HPAHMFLLKMPAAGP-----------NGENVRNHANNFLDLMHSEDRESKRGLVDAVVDF 723

Query: 580 CRNRNLNERAHELLYLGTLYGLYP-GLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAK 638
                  E A  +  +     ++P  L  K+   W +++  +S G A TAL   +    +
Sbjct: 724 LHKSGQKEEAGSVWEVAAQKNVFPDALREKSCSYWLINLHVMSEGTAVTALSRTLAWFRR 783

Query: 639 IVLREEVLPQLFLAETGTGTHKFSQGLA---TAFASHVNKLAAPFRQSEGKAGCFVATRE 695
            +L     P      TG G      G +    A    +N   +PF    G +GCFV   E
Sbjct: 784 QMLVSGTCPSRIDIVTGWGRRSRVTGTSMVRQAVEELLNIFGSPFFTESGNSGCFVGCGE 843

Query: 696 DLVSWV 701
            L  W+
Sbjct: 844 SLNKWL 849


>gi|224133318|ref|XP_002321537.1| predicted protein [Populus trichocarpa]
 gi|222868533|gb|EEF05664.1| predicted protein [Populus trichocarpa]
          Length = 834

 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 142/609 (23%), Positives = 260/609 (42%), Gaps = 41/609 (6%)

Query: 97  PTKPRRSVLSLQRQKRSTYSYNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTREN 156
           P++  +    + R  R   S    V ++    R+L    + EEA +     +      + 
Sbjct: 252 PSRDTKMPAVVARSARQFVSTGHVVENVSQILRQLRWGPSAEEALVNLNCHMDAYQANQ- 310

Query: 157 ALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSN 216
              +L  L+    +  FF+W+K    F  +   Y   +  L   +QF  I +L ++MV +
Sbjct: 311 ---VLKQLQDHTVALGFFHWLKQLPGFKHDGYTYTTMVGILGRAKQFVAINKLLDQMVRD 367

Query: 217 EIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV 276
             +   +TY+ +I    R N  ++A+E F +M K G  PD VTY  ++D++AK+G +   
Sbjct: 368 GCQPTVVTYNRLIHSYGRANYLNDAVEVFNQMQKAGCEPDRVTYCTLIDIHAKAGFLNFA 427

Query: 277 LSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA 336
           + +Y+R  A+G  PD   +SV+    G++G       +  EM   G  PNLV YN ++  
Sbjct: 428 MEMYQRMQAAGLSPDTFTYSVMINCLGKAGHLAAADKLFCEMIEQGCVPNLVTYNIMIAL 487

Query: 337 MGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMD 396
             KA     A  L+ +M  +G  PD+ T + ++++ G + +  +A  ++  M+   W  D
Sbjct: 488 QAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHSGYLDEAEAIFSEMKRKNWVPD 547

Query: 397 FILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELF 456
             +Y  L+++    G VE+A   ++ M  +  C P+  +  ++L+ +     + +A  L 
Sbjct: 548 EPVYGLLVDLWGKAGNVEKAWEWYQAMLHAGLC-PNVPTCNSLLSAFLRVNRLPDAYNLL 606

Query: 457 EEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLC 516
           + M  LG+  ++   T L+ C  +AR                  P D  C C L  V   
Sbjct: 607 QSMLNLGLNPSLQTYTLLLSCCTEAR-----------------SPYDMGCYCELMSV--- 646

Query: 517 ETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCL 576
            T       ++ L  A P           +     +   +F +++   + +++R   + +
Sbjct: 647 -TGHPAHMFLSSLPSAGP-----------DGQNVRHHVSKFLDMMHSEDRESKRGLVDAV 694

Query: 577 IDICRNRNLNERAHELLYLGTLYGLYP-GLHNKTLDEWSLDVRSLSVGAAQTALEEWMWT 635
           +D      L E A  +  +     +YP  +  K+   W +++  +S G A TAL   +  
Sbjct: 695 VDFLHKSGLKEEAGSVWEIAAQRNVYPDAVKEKSSCYWLINLHVMSEGTAVTALSRTLAW 754

Query: 636 LAKIVLREEVLPQLFLAETGTGTHKFSQG---LATAFASHVNKLAAPFRQSEGKAGCFVA 692
             + +L   V+P      TG G      G   +  A    ++  + PF    G  GCFV 
Sbjct: 755 FRRQMLVSGVIPSRIDIVTGWGRRSRVTGSSLVRQAVQELLHIFSFPFFTENGNTGCFVG 814

Query: 693 TREDLVSWV 701
             E L  W+
Sbjct: 815 CGEPLSRWL 823


>gi|414869157|tpg|DAA47714.1| TPA: hypothetical protein ZEAMMB73_516901 [Zea mays]
          Length = 853

 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 136/537 (25%), Positives = 230/537 (42%), Gaps = 46/537 (8%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           FF W+K Q  F  +   Y   +  L   RQF ++++L +EM     +   +TY+ II   
Sbjct: 346 FFQWLKRQPGFKHDGHTYTTMIGILGQARQFGVLKELLDEMSRAHCKPTVVTYNRIIHAY 405

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            R N   EA++ FE M + G  PD VTY  ++D++AK+G ++  + LY R    G  PD 
Sbjct: 406 GRANYLKEAVKVFEEMQEAGYEPDRVTYCTLIDIHAKAGYLDIAMDLYGRMQEVGLSPDT 465

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
             +SV+    G+ G       +  EM   G  PNLV YN ++    KA        L+ +
Sbjct: 466 FTYSVMVNCLGKGGQLAAAYKLFCEMIENGCTPNLVTYNIMIALQAKARNYENVVKLYKD 525

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M  +G  PD+ T + ++++ G                                     G 
Sbjct: 526 MQVAGFRPDKITYSIVMEVLGHC-----------------------------------GH 550

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
           ++EAE +F +M+  D+  PD   Y  +++++G  GNVD A+  ++ M + G+  NV  C 
Sbjct: 551 LDEAEAVFIEMR-RDWA-PDEPVYGLLVDLWGKAGNVDKALGWYQAMLQDGLQPNVPTCN 608

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQA 532
            L+    K  R  D   V    + RG+ P  +    LLS  ++ +    +G     +   
Sbjct: 609 SLLSAFLKMNRFQDAYIVLQNMLARGLVPSVQTYTLLLSCCTVGQA--QMGLCCQLMAIT 666

Query: 533 NPKLVAFLNLIEDNSTGFENIKEE---FRNVIKDTEVDARRPFCNCLIDICRNRNLNERA 589
                 FL  + D   G +N+++    F +++   + +++R   + +ID      L E A
Sbjct: 667 GHPAHMFLLYLPDAEAGGQNVRDHTGYFLDMMHSEDRESKRGLMDAVIDFLHKSGLKEEA 726

Query: 590 HELLYLGTLYGLYP-GLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQ 648
             +  +     +YP  +  K+   W +++  +S G A TAL   +    + VL     P+
Sbjct: 727 GFIWEVAAQKNVYPDSVREKSSSYWLINLHLMSEGTAVTALSRTLAWFHRQVLTLGTGPE 786

Query: 649 LFLAETGTGTHKFSQG---LATAFASHVNKLAAPFRQSEGKAGCFVATREDLVSWVQ 702
                TG G      G   +  +    +N   +PF  + G  GCFV   E L  W+ 
Sbjct: 787 RIDIVTGWGRRSRVTGSSLVRQSIQKLLNLFESPFFTTRGNTGCFVGCGEPLNKWLH 843


>gi|356512664|ref|XP_003525037.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74750-like [Glycine max]
          Length = 873

 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 142/606 (23%), Positives = 258/606 (42%), Gaps = 56/606 (9%)

Query: 116 SYNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTRENALLILN-SLKFWQKSYF-- 172
           S+N   RDLK+ AR         E     + ++   PT E AL  LN S+  +Q +    
Sbjct: 293 SFNKHPRDLKMSARTAPMNRRIVEVVSDILRQLRWGPTAEKALYNLNFSMDAYQANQILK 352

Query: 173 ----------FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDN 222
                     FF+W++ Q  F                                     D 
Sbjct: 353 QLQDPSVALGFFDWLRRQPGF-----------------------------------RHDG 377

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
            TY+T++    R   FD   +  E+M K G  P+ VTY+ ++  Y  +  ++E L+++  
Sbjct: 378 HTYTTMVGILGRARRFDSISKLLEQMVKDGCQPNVVTYNRLIHCYGCANYLKEALNVFNE 437

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
               G +PD + +  L  +  ++G  D    + + M+  G+ P+   Y+ ++  +GKAG 
Sbjct: 438 MQEVGCEPDRVTYCTLIDIHAKAGFIDVAMSMYKRMQEAGLSPDTFTYSVIINCLGKAGN 497

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
              A  LF EMVE G  P+  T   +I +  KAR  + AL+L+  M+   +  D + Y+ 
Sbjct: 498 LAAAHWLFCEMVEHGCVPNLVTYNIMIALQAKARNYEMALKLYHDMQNAGFQPDKVTYSI 557

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
           ++      G +EEAE +F +M+  ++  PD   Y  +++++G  GNV+ A E ++ M   
Sbjct: 558 VMEALGHCGYLEEAESVFVEMQQKNWV-PDEPVYGLLVDLWGKAGNVEKASEWYQAMLNA 616

Query: 463 GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDV 522
           G+  NV  C  L+    +  R+ D   +    +  G++P  +    LLS  +  + + D+
Sbjct: 617 GLLPNVPTCNSLLSAFLRLHRLPDAYNLVQSMVALGLRPSLQTYTLLLSCCTEAQPAHDM 676

Query: 523 GKVITCLQQANPKLVAFLNLIEDNSTGFENIKE---EFRNVIKDTEVDARRPFCNCLIDI 579
           G     +        AFL  +       +N+++   +F +++   + + +R   + +++ 
Sbjct: 677 GFFCELMAVTGHPAHAFLLSMPAAGPDGQNVRDHVSKFLDMMHTEDREGKRGLVDSVVNF 736

Query: 580 CRNRNLNERAHELLYLGTLYGLYP-GLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAK 638
                L E A  +        +YP  +  K+   W +++  +S G A TAL   +    +
Sbjct: 737 LNKSGLKEEAGSVWEAAAQRNVYPDAVKEKSSRYWLINLHVMSDGTAVTALSRTLAWFRQ 796

Query: 639 IVLREEVLPQLFLAETGTGTHKFSQG---LATAFASHVNKLAAPFRQSEGKAGCFVATRE 695
            +L   + P      TG G      G   +  A    ++  + PF   +G +GCFV   E
Sbjct: 797 RMLVSGIRPSRVDIITGWGRRSKVTGSSLVRQAVQDLLHTFSFPFLAEKGNSGCFVGCGE 856

Query: 696 DLVSWV 701
            L  W+
Sbjct: 857 PLCQWL 862


>gi|225456631|ref|XP_002266698.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74750
           [Vitis vinifera]
          Length = 875

 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 144/610 (23%), Positives = 266/610 (43%), Gaps = 61/610 (10%)

Query: 117 YNPRVRDLKLF-----ARKLNDCDNTEEAFLRAITEIPHQPTRENALLILNSL-KFWQKS 170
           ++  +RD K+      +R+     +  E   R + ++   P  E AL  LN L   +Q +
Sbjct: 291 FSKPLRDTKMIGIAPVSRQFGSSGHVVENVSRILRQLSWGPAAEEALRNLNCLMDAYQAN 350

Query: 171 YF------------FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEI 218
                         FF W+K Q  F  +   Y   +  L   RQF  I +L  EMV +  
Sbjct: 351 QVLKQIQDHPVALGFFYWLKRQTGFKHDGHTYTTMVGILGRARQFGAINKLLAEMVRDGC 410

Query: 219 ELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS 278
           + + +TY+ +I    R N  +EA+  F+RM + G  PD VTY  ++D++AK+G ++  L 
Sbjct: 411 QPNVVTYNRLIHSYGRANYLNEAVSVFDRMQEAGCQPDRVTYCTLIDIHAKAGFLDVALH 470

Query: 279 LYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMG 338
           +Y++   +   PD   +SV+    G++G       +  EM   G  PNLV YN ++    
Sbjct: 471 MYQKMQEAHLSPDTFTYSVIINCLGKAGHLTSAHKLFCEMVDQGCVPNLVTYNIMIALQA 530

Query: 339 KAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFI 398
           KA     A  L+ +M  +G  PD+ T + ++++ G     ++A  ++  M+   W  D  
Sbjct: 531 KARNYPTALELYRDMQNAGFQPDKVTYSIVMEVLGHCGHLEEAEAIFTEMKRKNWVPDEP 590

Query: 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458
           +Y  L+++   +G VE++   ++ M  +  C P+  +  ++L+ +     + +A  L + 
Sbjct: 591 VYGLLVDLWGKVGNVEKSWEWYQAMLNAGLC-PNVPTCNSLLSAFLRVHRLSDAYNLLQS 649

Query: 459 MSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCET 518
           M  LG+  ++   T L+ C  +AR           S D G       CG L++V      
Sbjct: 650 MLRLGLQPSLQTYTLLLSCCTEARS----------SFDMG------FCGELMAVT----- 688

Query: 519 SEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKE---EFRNVIKDTEVDARRPFCNC 575
                         +P  +  L++      G +N+++   +F +++   + +++R   + 
Sbjct: 689 -------------GHPAHMFLLSMPAAGPDG-QNVRDHVSKFLDLMHSEDRESKRGLVDA 734

Query: 576 LIDICRNRNLNERAHELLYLGTLYGLYP-GLHNKTLDEWSLDVRSLSVGAAQTALEEWMW 634
           ++D      L E A  +  +     +YP  +  K+   W +++  +S G A TAL   + 
Sbjct: 735 VVDFLHKSGLKEEAGSVWEVAAQKNVYPDAVREKSSCYWLINLHFMSDGTAVTALSRTLA 794

Query: 635 TLAKIVLREEVLPQLFLAETGTGTHKFSQGLA---TAFASHVNKLAAPFRQSEGKAGCFV 691
              + +L    +P      TG G      G +    A    ++  + PF    G +GCFV
Sbjct: 795 WFHREMLVSGTVPSRIDIVTGWGRRSRVTGASLVRQAVQELLHIFSFPFFTENGNSGCFV 854

Query: 692 ATREDLVSWV 701
              E L  W+
Sbjct: 855 GRGEPLGRWL 864


>gi|297839351|ref|XP_002887557.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333398|gb|EFH63816.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 845

 Score =  182 bits (461), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 131/549 (23%), Positives = 243/549 (44%), Gaps = 43/549 (7%)

Query: 160 ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIE 219
           +L  +  +  +  FF W+K Q  F  +   Y   + +L   +QF  I +L +EMV +  +
Sbjct: 322 VLKQMDNYANALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINRLLDEMVKDGCK 381

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
            + +TY+ +I    R N  +EA+  F++M + G  PD VTY  ++D++AK+G ++  + +
Sbjct: 382 PNTVTYNRLIHSYGRANYLNEAMNVFKQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDM 441

Query: 280 YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
           Y+R  A+G  PD   +SV+    G++G       +  EM   G  PNLV +N ++    K
Sbjct: 442 YQRMQAAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAK 501

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
           A     A  L+ +M  +G  PD+ T + ++++ G   + ++A  ++  M+   W  D  +
Sbjct: 502 ARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPV 561

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           Y  L+++    G VE+A + +++M L    +P+  +  ++L+ +     +  A  L + M
Sbjct: 562 YGLLVDLWGKAGNVEKAWQWYQEM-LHAGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSM 620

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETS 519
             LG+  ++   T L+ C   AR           + D G       CG L++V       
Sbjct: 621 LALGLHPSLQTYTLLLSCCTDARS----------NFDMG------FCGQLMAV------- 657

Query: 520 EDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEE---FRNVIKDTEVDARRPFCNCL 576
                        +P  +  L +      G + +++    F + +   + +++R   + +
Sbjct: 658 -----------SGHPAHMFLLKMPPAGPDG-QKVRDHVSNFLDFMHSEDRESKRGLMDAV 705

Query: 577 IDICRNRNLNERAHELLYLGTLYGLYP-GLHNKTLDEWSLDVRSLSVGAAQTALEEWMWT 635
           +D      L E A  +  +  +  +YP  L  K+   W +++  +S G A  AL   +  
Sbjct: 706 VDFLHKSGLKEEAGSVWEVAAVKNVYPDALREKSCSYWLINLHVMSEGTAVIALSRTLAW 765

Query: 636 LAKIVLREEVLPQLFLAETGTGTHKFSQGLA---TAFASHVNKLAAPFRQSEGKAGCFVA 692
             K +L     P      TG G      G +    A    +N    PF    G +GCFV 
Sbjct: 766 FRKQMLVTGDCPSRIDIVTGWGRRSRVTGTSMVRQAVEELLNIFNFPFFTENGNSGCFVG 825

Query: 693 TREDLVSWV 701
             E L  W+
Sbjct: 826 CGEPLKKWL 834


>gi|255540881|ref|XP_002511505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550620|gb|EEF52107.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 876

 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 132/549 (24%), Positives = 245/549 (44%), Gaps = 43/549 (7%)

Query: 160 ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIE 219
           +L  L+    +  FF W+K Q  F  +   Y   +  L   +QF  I +L ++MV +  +
Sbjct: 353 VLKQLQDHTVALNFFYWLKRQPGFNHDGHTYTTMVGILGRAKQFGAINKLLDQMVKDGCQ 412

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
            + +TY+ +I    R N  ++A++ F  M + G  PD VTY  ++D++AK+G ++  L +
Sbjct: 413 PNVVTYNRLIHSYGRANYLNDAVDVFNEMQRVGCEPDRVTYCTLIDIHAKAGFLDFALEM 472

Query: 280 YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
           Y+R  A+G  PD   +SV+    G++G       +  EM   G  PNLV YN ++    K
Sbjct: 473 YQRMQAAGLSPDTFTYSVIINCLGKAGHLAAAHKLFCEMVEQGCVPNLVTYNIMIALQAK 532

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
           A     A  L+ +M  +G  PD+ T + ++++ G   +  +A  ++  M+   W  D  +
Sbjct: 533 ARNYQSALKLYRDMQSAGFQPDKVTYSIVMEVLGHCGYLDEAEAVFSEMKRKNWVPDEPV 592

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           Y  L+++    G VE+A + ++ M L+   +P+  +  ++L+ +     + +A  L + M
Sbjct: 593 YGLLVDLWGKAGNVEKAWQWYQTM-LNTGLRPNVPTCNSLLSAFLRVHKLADAYNLLQSM 651

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETS 519
            ELG+  ++   T L+ C  +AR                  P D    C L  V+     
Sbjct: 652 LELGLNPSLQTYTLLLSCCTEAR-----------------SPYDMGIYCELMAVT----- 689

Query: 520 EDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKE---EFRNVIKDTEVDARRPFCNCL 576
                        +P  +  L+L      G +N+++   +F +++   + +++R   + +
Sbjct: 690 ------------GHPAHMFLLSLPSAGPDG-QNVRDHASKFLDLMHSEDRESKRGLVDAV 736

Query: 577 IDICRNRNLNERAHELLYLGTLYGLYP-GLHNKTLDEWSLDVRSLSVGAAQTALEEWMWT 635
           +D      L E A  +  +     +YP  +  K    W +++  +S G A TAL   +  
Sbjct: 737 VDFLHKSGLKEEAGSVWEVAAQRNVYPDAVKEKGSCYWLINLHVMSDGTAVTALSRTLAW 796

Query: 636 LAKIVLREEVLPQLFLAETGTGTHKFSQG---LATAFASHVNKLAAPFRQSEGKAGCFVA 692
             + +L   + P      TG G      G   +  A    ++  + PF    G +GCFV 
Sbjct: 797 FRQQMLVSGISPSRIDIVTGWGRRSRVTGSSMVRQAVQELLHIFSFPFFTENGNSGCFVG 856

Query: 693 TREDLVSWV 701
             E L  W+
Sbjct: 857 CGEPLNRWL 865


>gi|242086476|ref|XP_002443663.1| hypothetical protein SORBIDRAFT_08g023090 [Sorghum bicolor]
 gi|241944356|gb|EES17501.1| hypothetical protein SORBIDRAFT_08g023090 [Sorghum bicolor]
          Length = 853

 Score =  179 bits (453), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 134/537 (24%), Positives = 227/537 (42%), Gaps = 46/537 (8%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           FF W+K Q  F  +   Y   +  L   RQF ++++L +EM     +   +TY+ II   
Sbjct: 346 FFQWLKRQPGFKHDGHTYTTMIGILGQARQFGVLKKLLDEMSRAHCKPTVVTYNRIIHAY 405

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            R N   EA++ FE M + G  PD VTY  ++D++AK+G ++  + LY R    G  PD 
Sbjct: 406 GRANYLKEAVKVFEEMQEAGYEPDRVTYCTLIDIHAKAGYLDIAMDLYGRMQEVGLSPDT 465

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
             +S +    G+ G       +  EM   G  PNLV YN ++    KA        L+ +
Sbjct: 466 FTYSAMVNCLGKGGQLAAAYKLFCEMIENGCTPNLVTYNIMIALQAKARNYENVVKLYKD 525

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M  +G  PD+ T + ++++ G                                     G 
Sbjct: 526 MQVAGFRPDKITYSIVMEVLGHC-----------------------------------GH 550

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
           ++EAE +F +M+  D+  PD   Y  +++++G  GNVD A+  ++ M + G+  NV  C 
Sbjct: 551 LDEAEAVFIEMR-RDWA-PDEPVYGLLVDLWGKAGNVDKALGWYQAMLQDGLQPNVPTCN 608

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQA 532
            L+    K  R  D   V    + +G+ P  +    LLS  +  E    +G     +   
Sbjct: 609 SLLSAFLKMNRFQDAYIVLQNMLAQGLVPSVQTYTLLLSCCT--EAQAQMGLCGQLMAIT 666

Query: 533 NPKLVAFLNLIEDNSTGFENIKEE---FRNVIKDTEVDARRPFCNCLIDICRNRNLNERA 589
                 FL  + D   G +N+++    F +++   + +++R   + +ID      L E A
Sbjct: 667 GHPAHMFLLYLPDAEPGGQNVRDHTGYFLDMMHSEDRESKRGLMDAVIDFLHKSGLKEEA 726

Query: 590 HELLYLGTLYGLYP-GLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQ 648
             +  +     +YP  +  K+   W +++  +S G A TAL   +    + +L     P+
Sbjct: 727 GLIWEVAAQKNVYPDSVREKSSSYWLINLHLMSEGTAVTALSRTLAWFHRQILTLGTGPE 786

Query: 649 LFLAETGTGTHKFSQG---LATAFASHVNKLAAPFRQSEGKAGCFVATREDLVSWVQ 702
                TG G      G   +  +    +N    PF  + G  GCFV   E L  W+ 
Sbjct: 787 RIDIVTGWGRRSRVTGSSLVRQSVQKLLNLFEFPFFTTRGNTGCFVGCGEPLNKWLH 843


>gi|15221377|ref|NP_177613.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207514|sp|Q9SSF9.1|PP123_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74750
 gi|5882748|gb|AAD55301.1|AC008263_32 Contains 2 PF|01535 DUF domains [Arabidopsis thaliana]
 gi|332197508|gb|AEE35629.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 855

 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 117/488 (23%), Positives = 225/488 (46%), Gaps = 8/488 (1%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D  TY+T++    R   F E  +  + M + G  P+ VTY+ ++  Y ++  ++E ++++
Sbjct: 358 DGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLKEAMNVF 417

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
            +   +G +PD + +  L  +  ++G  D    + Q M+  G+ P+   Y+ ++  +GKA
Sbjct: 418 NQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINCLGKA 477

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G    A  LF EMV  G TP+  T   +I ++ KAR  + AL+L+  M+   +  D + Y
Sbjct: 478 GHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTY 537

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           + ++ +    G +EEAE +F +M+  ++  PD   Y  +++++G  GNVD A + ++ M 
Sbjct: 538 SIVMEVLGHCGFLEEAEGVFAEMQRKNWV-PDEPVYGLLVDLWGKAGNVDKAWQWYQAML 596

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSE 520
           + G+  NV  C  L+    +  R+ +   +    +  G+ P  +    LLS  +   ++ 
Sbjct: 597 QAGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLALGLHPSLQTYTLLLSCCTDARSNF 656

Query: 521 DVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEE---FRNVIKDTEVDARRPFCNCLI 577
           D+G     +  +      FL  +       + +++    F + +   + +++R   + ++
Sbjct: 657 DMGFCGQLMAVSGHPAHMFLLKMPPAGPDGQKVRDHVSNFLDFMHSEDRESKRGLMDAVV 716

Query: 578 DICRNRNLNERAHELLYLGTLYGLYP-GLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTL 636
           D      L E A  +  +     +YP  L  K+   W +++  +S G A  AL   +   
Sbjct: 717 DFLHKSGLKEEAGSVWEVAAGKNVYPDALREKSYSYWLINLHVMSEGTAVIALSRTLAWF 776

Query: 637 AKIVLREEVLPQLFLAETGTGTHKFSQGLA---TAFASHVNKLAAPFRQSEGKAGCFVAT 693
            K +L     P      TG G      G +    A    +N    PF    G +GCFV +
Sbjct: 777 RKQMLVSGDCPSRIDIVTGWGRRSRVTGTSMVRQAVEELLNIFNFPFFTENGNSGCFVGS 836

Query: 694 REDLVSWV 701
            E L +W+
Sbjct: 837 GEPLKNWL 844



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 80/181 (44%), Gaps = 36/181 (19%)

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
           G + +   Y T++  +G+A + G    L DEMV  G  P+  T   LI  YG+A + K  
Sbjct: 354 GFKHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLK-- 411

Query: 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
                                            EA  +F  M+ +  C+PD  +Y  +++
Sbjct: 412 ---------------------------------EAMNVFNQMQEAG-CEPDRVTYCTLID 437

Query: 442 IYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
           I+   G +D A+++++ M E G++ +    + +I CLGKA  +    R+F   + +G  P
Sbjct: 438 IHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTP 497

Query: 502 D 502
           +
Sbjct: 498 N 498


>gi|449440748|ref|XP_004138146.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18900-like [Cucumis sativus]
          Length = 874

 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 126/537 (23%), Positives = 233/537 (43%), Gaps = 44/537 (8%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           FF W+K    F  +   Y   +  L   +QF  I +L ++M+ +  + + +TY+ II   
Sbjct: 365 FFYWLKRLPRFRHDGHTYTTMIGLLGRAKQFAAINKLLDQMIKDGCQPNVVTYNRIIHSY 424

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            R N   +A+  F++M + G  PD VTY  ++D++AKSG ++  + +YE+   +G  PD 
Sbjct: 425 GRANYLQDAVNVFKQMQEAGCEPDRVTYCTLIDIHAKSGFLDVAMGMYEKMQDAGLTPDT 484

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
             +SV+    G++G  +    +   M   G  PNLV YN ++    KA    +A  L+ +
Sbjct: 485 FTYSVMINCLGKAGHLNAAHRLFCRMVDEGCVPNLVTYNIMIALQAKARNYEIALKLYRD 544

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M +SG  PD+ T   ++++ G   + ++A  ++  M++  W  D  +Y  L+++      
Sbjct: 545 MQQSGFEPDKVTYCIVMEVLGHCGFLEEAEGIFIEMQKKNWVPDEPVYGLLVDL------ 598

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
                                         +G  GNV  A E +  M + G+  NV  C 
Sbjct: 599 ------------------------------WGKSGNVQKAWEWYHAMLKAGLKPNVPTCN 628

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQA 532
            L+    +  ++ D  ++    +  G+KP  +    LLS  +  +T+ D+G     +Q  
Sbjct: 629 SLLSAFLRVHQLSDAYQLLQSMLTFGLKPSLQTYTLLLSCCTDAQTN-DMGFCCELMQVT 687

Query: 533 NPKLVAFLNLIEDNSTGFENIKE---EFRNVIKDTEVDARRPFCNCLIDICRNRNLNERA 589
                 FL  +       +N+++   +F +++   + +++R   + ++D      L E A
Sbjct: 688 GHPAHTFLVSLPSAGPNGQNVRDHMSKFLDLMHSEDRESKRGLVDAVVDFLHKSGLKEEA 747

Query: 590 HELLYLGTLYGLYP-GLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQ 648
             +        +YP  +  K+   W +++  +S G A TAL   +    + +L   V P 
Sbjct: 748 GCVWEAAMQKNVYPDAVKEKSSCYWLINLHVMSDGTAVTALSRTLAWFRQQLLLSGVGPS 807

Query: 649 LFLAETGTGTHKFSQG---LATAFASHVNKLAAPFRQSEGKAGCFVATREDLVSWVQ 702
                TG G      G   +  A    ++  + PF    G +GCFV   E L  W+ 
Sbjct: 808 RIDIVTGWGRRSKVTGSSLVRQAVQDLLSIFSFPFFTENGNSGCFVGCGEPLSRWLH 864


>gi|449477323|ref|XP_004154991.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g18900-like [Cucumis sativus]
          Length = 874

 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 126/537 (23%), Positives = 233/537 (43%), Gaps = 44/537 (8%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           FF W+K    F  +   Y   +  L   +QF  I +L ++M+ +  + + +TY+ II   
Sbjct: 365 FFYWLKRLPRFRHDGHTYTTMIGLLGRAKQFAAINKLLDQMIKDGCQPNVVTYNRIIHSY 424

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            R N   +A+  F++M + G  PD VTY  ++D++AKSG ++  + +YE+   +G  PD 
Sbjct: 425 GRANYLQDAVNVFKQMQEAGCEPDRVTYCTLIDIHAKSGFLDVAMGMYEKMQDAGLTPDT 484

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
             +SV+    G++G  +    +   M   G  PNLV YN ++    KA    +A  L+ +
Sbjct: 485 FTYSVMINCLGKAGHLNAAHRLFCRMVDEGCVPNLVTYNIMIALQAKARNYEIALKLYRD 544

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M +SG  PD+ T   ++++ G   + ++A  ++  M++  W  D  +Y  L+++      
Sbjct: 545 MQQSGFEPDKVTYCIVMEVLGHCGFLEEAEGIFIEMQKKNWVPDEPVYGLLVDL------ 598

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
                                         +G  GNV  A E +  M + G+  NV  C 
Sbjct: 599 ------------------------------WGKSGNVQKAWEWYHAMLKAGLKPNVPTCN 628

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQA 532
            L+    +  ++ D  ++    +  G+KP  +    LLS  +  +T+ D+G     +Q  
Sbjct: 629 SLLSAFLRVHQLSDAYQLLQSMLTFGLKPSLQTYTLLLSCCTDAQTN-DMGFCCELMQVT 687

Query: 533 NPKLVAFLNLIEDNSTGFENIKE---EFRNVIKDTEVDARRPFCNCLIDICRNRNLNERA 589
                 FL  +       +N+++   +F +++   + +++R   + ++D      L E A
Sbjct: 688 GHPAHTFLVSLPSAGPNGQNVRDHMSKFLDLMHSEDRESKRGLVDAVVDFLHKSGLKEEA 747

Query: 590 HELLYLGTLYGLYP-GLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQ 648
             +        +YP  +  K+   W +++  +S G A TAL   +    + +L   V P 
Sbjct: 748 GCVWEAAMQKNVYPDAVKEKSSCYWLINLHVMSDGTAVTALSRTLAWFRQQLLLSGVGPS 807

Query: 649 LFLAETGTGTHKFSQG---LATAFASHVNKLAAPFRQSEGKAGCFVATREDLVSWVQ 702
                TG G      G   +  A    ++  + PF    G +GCFV   E L  W+ 
Sbjct: 808 RIDIVTGWGRRSKVTGSSLVRQAVQDLLSIFSFPFFTENGNSGCFVGCGEPLSRWLH 864


>gi|302806226|ref|XP_002984863.1| hypothetical protein SELMODRAFT_121207 [Selaginella moellendorffii]
 gi|300147449|gb|EFJ14113.1| hypothetical protein SELMODRAFT_121207 [Selaginella moellendorffii]
          Length = 564

 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 131/550 (23%), Positives = 226/550 (41%), Gaps = 41/550 (7%)

Query: 160 ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIE 219
           IL   K    +Y FF W + Q  F  +   Y   +  L   + F ++  L +EM+    E
Sbjct: 40  ILKQQKEAGVAYNFFIWARKQAGFKHDVHTYTTILGILGRAKSFDVLNNLLDEMIREGCE 99

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
            + +TY+ +I C  R N  D +++ F  M   G  PD VTY  ++D+ AK+G  +  + L
Sbjct: 100 PNVVTYNRLIHCYGRANDLDSSLKLFNVMQMVGCEPDRVTYCTLIDLQAKAGFHDAAMDL 159

Query: 280 YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
           Y +   +G++PD   +S++    G++G  +    +  EM   G  P+LV YN +++   K
Sbjct: 160 YRQMQHAGFRPDTFTYSIIIHCLGKAGKLNAAYKLFCEMTDRGYAPSLVTYNIIIDLHAK 219

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
           AGK  +A  L+ ++ E G  PD  T   ++++ G     +DA +++E M    W  D  +
Sbjct: 220 AGKFDMALKLYSDLQEVGYAPDRVTYGIIMEVLGNCGHIEDAEQVFEEMERAGWVADNPI 279

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           +  +++M                                    +G  GN + A + F  M
Sbjct: 280 FGLMVDM------------------------------------WGKTGNAEKAAQWFNRM 303

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETS 519
            + G+  NV  C  L+    ++   D    V G     G+ P  +    LLS  + C  +
Sbjct: 304 LDSGLQPNVPACNSLLSAYLRSSFYDAAGGVLGGMAKWGLYPTLQTYTSLLSSCAACRAA 363

Query: 520 EDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDI 579
            +   +   +         F+  +  +      I+  F + ++  E+++RR F + LID 
Sbjct: 364 WEYDALFGLMGGTGHPAHPFVCSLLASGEMVVGIR-CFFDAMQFEELESRRGFADSLIDF 422

Query: 580 CRNRNLNERAHELLYLGTLYGLYP-GLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAK 638
                    A  +  +     LYP  +  K    WS+++  +S G A  AL   +   A+
Sbjct: 423 LHRAGKAVAAGSVWEVAAEKNLYPNAVREKAPQYWSINLHVMSTGTALVALARTLAMFAE 482

Query: 639 IVLREEVLPQLFLAETGTGTHKFSQG---LATAFASHVNKLAAPFRQSEGKAGCFVATRE 695
            V+R    P      TG G      G   +  A    +  L +PF       GCFV    
Sbjct: 483 AVVRTGAAPYRIDIITGWGRRSRVPGASLVKQAVEGMLRSLNSPFHLDGLNVGCFVGQGP 542

Query: 696 DLVSWVQARP 705
            L  W++  P
Sbjct: 543 ALAEWLKMVP 552


>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 621

 Score =  175 bits (444), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 129/425 (30%), Positives = 203/425 (47%), Gaps = 18/425 (4%)

Query: 190 YNVTMKSLRFGRQFQLIEQ--LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           YN  + +L  G+  +L E   L  EM       D  TY+++I    +     +A+E  E 
Sbjct: 117 YNCLISTL--GKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEE 174

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M + G  PD +TYS+++    K G+  +   L++     G KPD I F+ L    G++G 
Sbjct: 175 MERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGR 234

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
            D    +L EMK  GV+P +V YN L+   GK G    A +L DEM  +G  PD  T + 
Sbjct: 235 VDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSC 294

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           LI    KA    +A ++ ++M +   P D I YNTL+N     GL+ +A RLF+ MK S 
Sbjct: 295 LITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMK-SK 353

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
            C PD  +Y+ ++   G    V++A  LFEEM  +G+  ++     +I  LGKA ++DD 
Sbjct: 354 GCNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDA 413

Query: 488 VRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAFLNLIED 545
            R+F     +G+ PD       L+ +      ++  K+   ++++   P +  +  L+  
Sbjct: 414 DRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALL-- 471

Query: 546 NSTGFENIKEE------FRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLY 599
              G    KE        + +I+         F  CL  +    N++E AHELL      
Sbjct: 472 --LGLSKTKEVDDACGLLKELIEQGCAFDSLKFDECLEILTSWGNVDE-AHELLQFANSK 528

Query: 600 GLYPG 604
           GL+PG
Sbjct: 529 GLWPG 533



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 98/354 (27%), Positives = 171/354 (48%), Gaps = 2/354 (0%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           P+  T  + L  L      +++   F  +K+    P + + Y+  + SL    +++   +
Sbjct: 7   PNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTP-DVVSYSCLINSLGRAGKWEAALE 65

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           +  EM +   + +  TY+T++ C  +   FDEA+     M   G +PD  TY+ ++    
Sbjct: 66  VVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLG 125

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           K+G++ E  +L+      G  PD   ++ L    G+ G       +L+EM+  G  P+++
Sbjct: 126 KAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVM 185

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            Y++L+  +GK G+   A  LF EM   G  PD  T TAL+   GKA    DALEL + M
Sbjct: 186 TYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEM 245

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
           +E       + YN L+     +G + EA  L ++MK  + CKPD  +Y+ ++        
Sbjct: 246 KERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMK-RNGCKPDVVTYSCLITGLIKASQ 304

Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           +D A ++ ++M + G   + +    LI  LGKA  ++D  R+F     +G  PD
Sbjct: 305 LDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPD 358



 Score =  142 bits (358), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 92/336 (27%), Positives = 156/336 (46%), Gaps = 2/336 (0%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           ++Y   + +K     P + + Y+  +  L    Q     Q+  +M       D ITY+T+
Sbjct: 272 EAYNLLDEMKRNGCKP-DVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTL 330

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
           I    +  L ++A   F+RM   G  PD VTYS ++    K+ +VE    L+E   + G 
Sbjct: 331 INGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGI 390

Query: 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348
           +PD   +  +  + G++G  D    +  EM+  G+ P+++ YN  L ++G+ G+   AR 
Sbjct: 391 QPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARK 450

Query: 349 LFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCA 408
           +F++M ESGL PD  T  AL+    K +   DA  L + + E     D + ++  L +  
Sbjct: 451 IFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKFDECLEILT 510

Query: 409 DIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINV 468
             G V+EA  L +    S    P   SY A+++     G V  A    E++ E G   ++
Sbjct: 511 SWGNVDEAHELLQ-FANSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQGGKPDI 569

Query: 469 MGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR 504
           +  + LI  LG+  +ID    +      RG+K   R
Sbjct: 570 VSYSSLISALGQTGQIDTAFELLEEMSKRGLKLSPR 605



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 105/378 (27%), Positives = 178/378 (47%), Gaps = 6/378 (1%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYST 227
           K++  F  +K +   P ++I +   M +L + GR    +E L +EM    ++   +TY+ 
Sbjct: 202 KAFKLFQEMKRRGRKP-DSITFTALMDALGKAGRVDDALE-LLDEMKERGVKPGVVTYNA 259

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           +I    +     EA    + M + G  PD VTYS ++    K+ +++E   + ++    G
Sbjct: 260 LIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEG 319

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
             PD I ++ L    G++G  +    +   MKS G  P++V Y+TL+ A+GKA +   A 
Sbjct: 320 CPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESAC 379

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
            LF+EM   G+ PD  T  ++I + GKA    DA  L+  MR      D I YN  LN  
Sbjct: 380 VLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSL 439

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
              G  +EA ++FEDMK S    PD  +Y A+L        VD+A  L +E+ E G A +
Sbjct: 440 GRGGRFKEARKIFEDMKESGLL-PDVATYDALLLGLSKTKEVDDACGLLKELIEQGCAFD 498

Query: 468 VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVIT 527
            +     ++ L     +D+   +   +  +G+ P       L+  ++      +    + 
Sbjct: 499 SLKFDECLEILTSWGNVDEAHELLQFANSKGLWPGASSYNALIDALAKAGRVSEAFNTLE 558

Query: 528 CL--QQANPKLVAFLNLI 543
            L  Q   P +V++ +LI
Sbjct: 559 DLKEQGGKPDIVSYSSLI 576



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 116/263 (44%), Gaps = 1/263 (0%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           P   T    +  L      + +   F  ++S  + P +   Y   +  L    Q    ++
Sbjct: 357 PDVVTYSTLITALGKAARVESACVLFEEMESVGIQP-DLFTYCSIITVLGKAGQVDDADR 415

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L +EM    +  D ITY+  +    R   F EA + FE M ++GL+PD  TY A+L   +
Sbjct: 416 LFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALLLGLS 475

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           K+ +V++   L +  +  G   D + F    ++    G+ D    +LQ   S G+ P   
Sbjct: 476 KTKEVDDACGLLKELIEQGCAFDSLKFDECLEILTSWGNVDEAHELLQFANSKGLWPGAS 535

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            YN L++A+ KAG+   A +  +++ E G  PD  + ++LI   G+      A EL E M
Sbjct: 536 SYNALIDALAKAGRVSEAFNTLEDLKEQGGKPDIVSYSSLISALGQTGQIDTAFELLEEM 595

Query: 389 RENKWPMDFILYNTLLNMCADIG 411
            +    +    Y+ L+    D G
Sbjct: 596 SKRGLKLSPRSYSNLVRKLQDWG 618



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 65/119 (54%), Gaps = 1/119 (0%)

Query: 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIEL 455
           + + YN+LLN  A  G  EEA+ LFE++K + +  PD  SY+ ++N  G  G  + A+E+
Sbjct: 8   NVVTYNSLLNALAKAGQCEEAQLLFEELKAAKW-TPDVVSYSCLINSLGRAGKWEAALEV 66

Query: 456 FEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVS 514
             EM   G   N+     L+ CLGKA + D+ +R+     D G  PD R   CL+S + 
Sbjct: 67  VAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLG 125



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 73/144 (50%), Gaps = 1/144 (0%)

Query: 359 TPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAER 418
           +P+  T  +L+    KA   ++A  L+E ++  KW  D + Y+ L+N     G  E A  
Sbjct: 6   SPNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALE 65

Query: 419 LFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL 478
           +  +M+ +  CKP+ ++Y  +++  G  G  D A+ L  EM + G   +V    CLI  L
Sbjct: 66  VVAEMQ-AKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTL 124

Query: 479 GKARRIDDLVRVFGVSIDRGVKPD 502
           GKA R+ +   +F    +RG  PD
Sbjct: 125 GKAGRLSEAFTLFAEMRERGCVPD 148


>gi|302808451|ref|XP_002985920.1| hypothetical protein SELMODRAFT_123132 [Selaginella moellendorffii]
 gi|300146427|gb|EFJ13097.1| hypothetical protein SELMODRAFT_123132 [Selaginella moellendorffii]
          Length = 574

 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 134/554 (24%), Positives = 232/554 (41%), Gaps = 44/554 (7%)

Query: 160 ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIE 219
           IL   K    +Y FF W + Q  F  +   Y   +  L   + F ++  L +EM+    E
Sbjct: 40  ILKQQKEAGVAYNFFIWARKQAGFKHDVHTYTTILGILGRAKSFDVLNNLLDEMIREGCE 99

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
            + +TY+ +I C  R N  D +++ F  M   G  PD VTY  ++D+ AK          
Sbjct: 100 PNVVTYNRLIHCYGRANDLDSSLKLFNVMQMVGCEPDRVTYCTLIDLQAK---------- 149

Query: 280 YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
                                    +G +D    + ++M+  G +P+   Y+ ++  +GK
Sbjct: 150 -------------------------AGFHDAAMELYRQMQHAGFRPDTFTYSIIIHCLGK 184

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
           AGK   A  LF EM + G  P   T   +I ++ KA     AL+L+  ++E  +  D + 
Sbjct: 185 AGKLNAAYKLFCEMTDRGYAPSLVTYNIIIDLHAKAGKFDMALKLYSDLQEVGYAPDRVT 244

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           Y  ++ +  + G +E+AE++FE+M+ + +   DN  +  M++++G  GN + A + F  M
Sbjct: 245 YGIIMEVLGNCGHIEDAEQVFEEMERAGWV-ADNPIFGLMVDMWGKTGNAEKAAQWFNRM 303

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETS 519
            + G+  NV  C  L+    ++   D    V G     G+ P  +    LLS  + C  +
Sbjct: 304 LDSGLQPNVPACNSLLSAYLRSSFYDAAGGVLGGMAKWGLYPTLQTYTSLLSSCAACRAA 363

Query: 520 EDVGKVITCL-QQANPKLVAFLNLIEDNSTGFENIKEEFR---NVIKDTEVDARRPFCNC 575
            +   +   +    +P      +L+    T    +    R   + ++  E+++RR F + 
Sbjct: 364 WEYDALFGLMGGTGHPAHPFVCSLLASGGTAGGTMVVGIRCFFDAMQFEELESRRGFADS 423

Query: 576 LIDICRNRNLNERAHELLYLGTLYGLYP-GLHNKTLDEWSLDVRSLSVGAAQTALEEWMW 634
           LID          A  +  +     LYP  +  K    WS+++  +S G A  AL   + 
Sbjct: 424 LIDFLHRAGKAVAAGSVWEVAAEKNLYPNAVREKAPQYWSINLHVMSTGTALVALARTLA 483

Query: 635 TLAKIVLREEVLPQLFLAETGTGTHKFSQG---LATAFASHVNKLAAPFRQSEGKAGCFV 691
             A+ V+R    P      TG G      G   +  A    +  L +PF       GCFV
Sbjct: 484 MFAEAVVRTGAAPYRIDIITGWGRRSRVPGASLVKQAVEGMLRSLNSPFHLDGLNVGCFV 543

Query: 692 ATREDLVSWVQARP 705
                L  W++  P
Sbjct: 544 GQGPALAEWLKMVP 557


>gi|326490553|dbj|BAJ84940.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 856

 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 137/538 (25%), Positives = 225/538 (41%), Gaps = 48/538 (8%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           FF+W+K Q  F  +   Y   +  L   +QF  + +L +EM S   +   +TY+ II   
Sbjct: 349 FFHWLKRQPGFKHDGHTYTTMIGILGQAKQFGTMRKLLDEMSSVNCKPTVVTYNRIIHAY 408

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            R N   EA++ FE M   G  PD VTY  ++D++AKSG +E  + LY R    G  PD 
Sbjct: 409 GRANYLREAVKVFEEMEGAGYQPDRVTYCTLIDIHAKSGYLEVAMDLYGRMQEVGLSPDT 468

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
             +S +    G+ G       +  EM   G  PNLV YN ++    KA        L+ +
Sbjct: 469 FTYSAMVNCLGKGGQLAAAYKLFCEMIDNGCTPNLVTYNIIIALQAKARNYDNVVKLYRD 528

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M  +G  PD+ T + ++++ G                                     G 
Sbjct: 529 MQIAGFRPDKITYSIVMEVLGH-----------------------------------CGH 553

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
           ++EAE +F +M+  D+  PD   Y  +++++G  GNVD A+  +  M + G+  NV  C 
Sbjct: 554 LDEAEAVFLEMR-RDWA-PDEPVYGLLVDLWGKAGNVDKALGWYHAMLQDGLQPNVPTCN 611

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQA 532
            L+    K  R  D   V    + +G+ P  +    LLS  +  +    +G     +   
Sbjct: 612 SLLSAFLKLNRFQDAYGVLQNMLAQGLVPSLQTYTLLLSCCT--DAHAQMGLCCQLMAIT 669

Query: 533 NPKLVAFLNLIEDNSTGFENIKEE---FRNVIKDTEVDARRPFCNCLIDICRNRNLNERA 589
                 FL  + D   G EN+++    F +++   + +++R   + +ID      L E A
Sbjct: 670 GHPAHMFLLYLPDAEPGGENVRDHARYFLDMMHSEDRESKRGIMDAVIDFLHKSGLKEEA 729

Query: 590 HELLYLGTLYGLYP-GLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQ 648
             +  +     +YP  +  K+   W +++  +S G A TAL   +    + +L     P+
Sbjct: 730 GFIWEVAAQRNVYPDSVREKSSSYWLINLHLMSEGTAVTALSRTLAWFHRQMLLMGSCPE 789

Query: 649 LFLAETGTGTHKFSQGLATAFASHVNKLAA----PFRQSEGKAGCFVATREDLVSWVQ 702
                TG G      G +    S + KL      P   + G  GCFV   E L  W+ 
Sbjct: 790 RIDIVTGWGRRSRVTGSSLVRQS-IEKLLHLFQFPLFAARGNTGCFVGCGEPLSQWLH 846



 Score = 40.8 bits (94), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 64/153 (41%), Gaps = 14/153 (9%)

Query: 363 KTLTALIKIYGKARWAKDALELWERMREN-----KWPMDFILYNTLLNMCADIGLVEEAE 417
           K+L A+ + Y   +  K     W  M E+     +  +D    N +L +  D  +   A 
Sbjct: 296 KSLRAVEQYYHTLQQMK-----WGPMTEHVLDGLRCKIDAFQANQVLKLLHDHNI---AL 347

Query: 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
             F  +K     K D ++YT M+ I G         +L +EMS +     V+    +I  
Sbjct: 348 GFFHWLKRQPGFKHDGHTYTTMIGILGQAKQFGTMRKLLDEMSSVNCKPTVVTYNRIIHA 407

Query: 478 LGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
            G+A  + + V+VF      G +P DR+  C L
Sbjct: 408 YGRANYLREAVKVFEEMEGAGYQP-DRVTYCTL 439


>gi|168028441|ref|XP_001766736.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162681945|gb|EDQ68367.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 560

 Score =  173 bits (439), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 126/493 (25%), Positives = 232/493 (47%), Gaps = 19/493 (3%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D  TY+T+I    R   F+      + M + G  P  VTY+ ++  Y ++  + E + ++
Sbjct: 66  DVCTYTTMIGIMGRARNFEACSRLLQEMRREGCEPCVVTYNRLIHAYGRANFLGEAMRIF 125

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
            +    G  PD + +  L  +  ++G +D    + Q+M+  G QP+   Y+ ++  +GKA
Sbjct: 126 YQMQEEGCSPDRVTYCTLVDLHSKAGFHDNAMDMYQKMQQAGFQPDTFTYSVIIHCLGKA 185

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           GK   A  LF+EMVE G  P   T   +I +  K+     A++L+  M++  +  D + Y
Sbjct: 186 GKVSEALKLFEEMVERGFAPSLVTYNIIIDLQAKSGNYVMAMKLYNDMQDAGFHPDRVTY 245

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           + ++ +   IG ++EAE +F +M+ + +  PD   Y  M++++G   N + A+E +++M 
Sbjct: 246 SIMMEVLGQIGHLQEAELMFNEMEQAGWV-PDAPIYGVMVDMWGKARNAERALEWYQKML 304

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDR----GVKPDDRLCGCLLSVVSLC 516
           + G+  NV     L   LG   R+      FGV I+     G+ P  +    LLS    C
Sbjct: 305 DSGLTPNVQISNSL---LGSYLRMQQFDLAFGV-IETMKAWGLVPTLQTHTILLSS---C 357

Query: 517 ETSEDVGKVITCLQQANPKLVAF---LNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFC 573
             S    +V+  + +++  + +F   L L +      ++I + F   +   E D +R F 
Sbjct: 358 TASAQHHQVVNLMHRSSETVYSFVCTLLLRQLPPQELKHIVQHFFESLHGEEHDCKRGFT 417

Query: 574 NCLIDICRNRNLNERAHELLYLGTLYGLYP-GLHNKTLDEWSLDVRSLSVGAAQTALEEW 632
           + LI+   N      A  +  +G  + LYP  +  K  +++S+++  +S+G A  AL   
Sbjct: 418 DSLIEFLHNLERRPEAGLVWEVGREHNLYPQAVRMKANNQYSINLHVMSMGTALVALSRT 477

Query: 633 MWTLAKIVLREEVLPQLFLAETGTGTHKFSQGLA---TAFASHVNKLAAPFRQSEGKAGC 689
           +    + +L   V P+     TG G H    G +    A  + +  L +PF       GC
Sbjct: 478 LSEFREKMLYTGVAPERIEIITGWGKHSRVPGASLVRQAVQNLLTALGSPFYVESSNVGC 537

Query: 690 FVATREDLVSWVQ 702
           FV+  + L +W+ 
Sbjct: 538 FVSHGKPLQNWLH 550



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 103/212 (48%), Gaps = 1/212 (0%)

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
           G + ++  Y T++  MG+A        L  EM   G  P   T   LI  YG+A +  +A
Sbjct: 62  GYKHDVCTYTTMIGIMGRARNFEACSRLLQEMRREGCEPCVVTYNRLIHAYGRANFLGEA 121

Query: 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
           + ++ +M+E     D + Y TL+++ +  G  + A  +++ M+ + + +PD ++Y+ +++
Sbjct: 122 MRIFYQMQEEGCSPDRVTYCTLVDLHSKAGFHDNAMDMYQKMQQAGF-QPDTFTYSVIIH 180

Query: 442 IYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
             G  G V  A++LFEEM E G A +++    +I    K+      ++++    D G  P
Sbjct: 181 CLGKAGKVSEALKLFEEMVERGFAPSLVTYNIIIDLQAKSGNYVMAMKLYNDMQDAGFHP 240

Query: 502 DDRLCGCLLSVVSLCETSEDVGKVITCLQQAN 533
           D      ++ V+      ++   +   ++QA 
Sbjct: 241 DRVTYSIMMEVLGQIGHLQEAELMFNEMEQAG 272



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 84/168 (50%), Gaps = 2/168 (1%)

Query: 335 EAMGKAGKPGLARSLFDEMVES-GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKW 393
           E +    + GLA   FD   E  G   D  T T +I I G+AR  +    L + MR    
Sbjct: 39  EVLKHQKESGLALKFFDWAKEQEGYKHDVCTYTTMIGIMGRARNFEACSRLLQEMRREGC 98

Query: 394 PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAI 453
               + YN L++       + EA R+F  M+  + C PD  +Y  +++++   G  DNA+
Sbjct: 99  EPCVVTYNRLIHAYGRANFLGEAMRIFYQMQ-EEGCSPDRVTYCTLVDLHSKAGFHDNAM 157

Query: 454 ELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
           +++++M + G   +    + +I CLGKA ++ + +++F   ++RG  P
Sbjct: 158 DMYQKMQQAGFQPDTFTYSVIIHCLGKAGKVSEALKLFEEMVERGFAP 205



 Score = 41.2 bits (95), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 4/110 (3%)

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           N +L    + GL   A + F+  K  +  K D  +YT M+ I G   N +    L +EM 
Sbjct: 38  NEVLKHQKESGL---ALKFFDWAKEQEGYKHDVCTYTTMIGIMGRARNFEACSRLLQEMR 94

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
             G    V+    LI   G+A  + + +R+F    + G  P DR+  C L
Sbjct: 95  REGCEPCVVTYNRLIHAYGRANFLGEAMRIFYQMQEEGCSP-DRVTYCTL 143


>gi|168034142|ref|XP_001769572.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162679114|gb|EDQ65565.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 871

 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 139/545 (25%), Positives = 252/545 (46%), Gaps = 34/545 (6%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           +K+   F  ++ + + P + I +N  +     G  ++  +++  EM    IE D  TY+T
Sbjct: 287 KKALDIFEEMQKEGVEP-DRITFNSLIAVCSRGSLWEDSQRVFAEMQRRGIEQDIFTYNT 345

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           +I    +    + A      M    + P+ VTYS ++D Y K G  EE + LY     SG
Sbjct: 346 LIDAVCKGGQMELAASIMSSMRLKNISPNVVTYSTMIDGYGKLGCFEEAIGLYHDMKESG 405

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
            +PD ++++ L  ++ + G +D      ++M+ +G++ ++V YN L++A GK GK   A 
Sbjct: 406 VRPDRVSYNTLIDIYAKLGRFDDALTACKDMERVGLKADVVTYNALIDAYGKQGKYKDAA 465

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
            LFD+M   GL P+  T +ALI  Y KA   +DA  ++   +      D +LY++L++ C
Sbjct: 466 GLFDKMKAEGLVPNVLTYSALIDAYSKAGMHQDATSIFVEFKRAGLKPDVVLYSSLIDSC 525

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
              GLVE+A  L ++M  +   +P+  +Y ++++ YG  G VDN      E ++  + IN
Sbjct: 526 CKCGLVEDAVVLLQEMTQAG-IQPNIVTYNSLIDAYGRNGQVDNV-----EAAKGNMPIN 579

Query: 468 VM------GCTCLIQCLGKARRIDD------LVRVFGVSIDRGVKPDDRLCGCLLSVVSL 515
           V           + + L   +  +D       V VF      G+KP+      +L+  S 
Sbjct: 580 VFNKVGDRSTEIICKTLTSQQNANDHTGVLAAVSVFHEMQQFGLKPNVVTFSAILNACSR 639

Query: 516 CETSEDVGKVITCLQQANPKLVA-----FLNLIEDNSTGFENIKEEFRNVIKDTEVDARR 570
           C + ++   ++  ++  +  +        + L E      + + +E    I   +     
Sbjct: 640 CSSLQEASVLLEQMRFFDSWVYGIAHGLLMGLREHVWVEAQRLFDE----IARMDYATGA 695

Query: 571 PFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALE 630
            F N L D+  +    + A E++       ++     ++  ++ LD+  +SVGAAQ  L 
Sbjct: 696 AFYNALTDVLWHFGQRQGAQEVVVAAKRRQVWENAWWRSEQQFCLDLHLMSVGAAQAMLH 755

Query: 631 EWMWTLAKIVLREEVLPQLFLAETGTGTHKFSQGLAT---AFASHVNKLAAPF---RQSE 684
            W+  L  +V     LP++    TG G H    G +T   A  S + ++ APF   R +E
Sbjct: 756 VWLLDLRALVWDGHALPRVLSILTGWGKHSKVAGFSTVKRAVESRLLEIKAPFQVGRYNE 815

Query: 685 GKAGC 689
           G+  C
Sbjct: 816 GRLVC 820



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 96/325 (29%), Positives = 167/325 (51%), Gaps = 6/325 (1%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG-KVEEVLSLYER 282
            YS +++   R     EA++ F+ M K G  P+ +TY+ I+D   K G  +++ L ++E 
Sbjct: 236 AYSAMVSAYGRSGRCREALKVFQAMKKAGCKPNLITYNTIIDACGKGGVDLKKALDIFEE 295

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
               G +PD I F+ L  +      ++  + V  EM+  G++ ++  YNTL++A+ K G+
Sbjct: 296 MQKEGVEPDRITFNSLIAVCSRGSLWEDSQRVFAEMQRRGIEQDIFTYNTLIDAVCKGGQ 355

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
             LA S+   M    ++P+  T + +I  YGK    ++A+ L+  M+E+    D + YNT
Sbjct: 356 MELAASIMSSMRLKNISPNVVTYSTMIDGYGKLGCFEEAIGLYHDMKESGVRPDRVSYNT 415

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
           L+++ A +G  ++A    +DM+     K D  +Y A+++ YG  G   +A  LF++M   
Sbjct: 416 LIDIYAKLGRFDDALTACKDMERVG-LKADVVTYNALIDAYGKQGKYKDAAGLFDKMKAE 474

Query: 463 GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDR-GVKPDDRLCGCLLSVVSLCETSED 521
           G+  NV+  + LI    KA    D   +F V   R G+KPD  L   L+     C   ED
Sbjct: 475 GLVPNVLTYSALIDAYSKAGMHQDATSIF-VEFKRAGLKPDVVLYSSLIDSCCKCGLVED 533

Query: 522 VGKVITCLQQAN--PKLVAFLNLIE 544
              ++  + QA   P +V + +LI+
Sbjct: 534 AVVLLQEMTQAGIQPNIVTYNSLID 558



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 101/399 (25%), Positives = 182/399 (45%), Gaps = 13/399 (3%)

Query: 238 FDEAIEWFERMYKTGLMPDEVT--YSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAF 295
           ++ A++ +E M + G +  E +   S ++    + GKVE  L ++ R   +G+  +  A+
Sbjct: 178 WERALQGYEWMVQQGHLRSEWSKLASIMISTLGRLGKVEIALDVFNRAQKAGFGNNVYAY 237

Query: 296 SVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP-GLARSLFDEMV 354
           S +   +G SG       V Q MK  G +PNL+ YNT+++A GK G     A  +F+EM 
Sbjct: 238 SAMVSAYGRSGRCREALKVFQAMKKAGCKPNLITYNTIIDACGKGGVDLKKALDIFEEMQ 297

Query: 355 ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
           + G+ PD  T  +LI +  +    +D+  ++  M+      D   YNTL++     G +E
Sbjct: 298 KEGVEPDRITFNSLIAVCSRGSLWEDSQRVFAEMQRRGIEQDIFTYNTLIDAVCKGGQME 357

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
            A  +   M+L +   P+  +Y+ M++ YG  G  + AI L+ +M E GV  + +    L
Sbjct: 358 LAASIMSSMRLKN-ISPNVVTYSTMIDGYGKLGCFEEAIGLYHDMKESGVRPDRVSYNTL 416

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN- 533
           I    K  R DD +         G+K D      L+         +D   +   ++    
Sbjct: 417 IDIYAKLGRFDDALTACKDMERVGLKADVVTYNALIDAYGKQGKYKDAAGLFDKMKAEGL 476

Query: 534 -PKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRP---FCNCLIDICRNRNLNERA 589
            P ++ +  LI+  S     + ++  ++  + +    +P     + LID C    L E A
Sbjct: 477 VPNVLTYSALIDAYSKA--GMHQDATSIFVEFKRAGLKPDVVLYSSLIDSCCKCGLVEDA 534

Query: 590 HELLYLGTLYGLYPGL--HNKTLDEWSLDVRSLSVGAAQ 626
             LL   T  G+ P +  +N  +D +  + +  +V AA+
Sbjct: 535 VVLLQEMTQAGIQPNIVTYNSLIDAYGRNGQVDNVEAAK 573



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 137/281 (48%), Gaps = 2/281 (0%)

Query: 223 ITYSTII-TCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYE 281
           ITY+TII  C K      +A++ FE M K G+ PD +T+++++ V ++    E+   ++ 
Sbjct: 270 ITYNTIIDACGKGGVDLKKALDIFEEMQKEGVEPDRITFNSLIAVCSRGSLWEDSQRVFA 329

Query: 282 RGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG 341
                G + D   ++ L     + G  +    ++  M+   + PN+V Y+T+++  GK G
Sbjct: 330 EMQRRGIEQDIFTYNTLIDAVCKGGQMELAASIMSSMRLKNISPNVVTYSTMIDGYGKLG 389

Query: 342 KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYN 401
               A  L+ +M ESG+ PD  +   LI IY K     DAL   + M       D + YN
Sbjct: 390 CFEEAIGLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALTACKDMERVGLKADVVTYN 449

Query: 402 TLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461
            L++     G  ++A  LF+ MK ++   P+  +Y+A+++ Y   G   +A  +F E   
Sbjct: 450 ALIDAYGKQGKYKDAAGLFDKMK-AEGLVPNVLTYSALIDAYSKAGMHQDATSIFVEFKR 508

Query: 462 LGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            G+  +V+  + LI    K   ++D V +       G++P+
Sbjct: 509 AGLKPDVVLYSSLIDSCCKCGLVEDAVVLLQEMTQAGIQPN 549


>gi|115489794|ref|NP_001067384.1| Os12g0638900 [Oryza sativa Japonica Group]
 gi|77556813|gb|ABA99609.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113649891|dbj|BAF30403.1| Os12g0638900 [Oryza sativa Japonica Group]
 gi|125580213|gb|EAZ21359.1| hypothetical protein OsJ_37016 [Oryza sativa Japonica Group]
          Length = 859

 Score =  168 bits (426), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 131/538 (24%), Positives = 231/538 (42%), Gaps = 48/538 (8%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           FF W+K Q  F  +   Y   +  L   RQF  + +L +EM S             + C 
Sbjct: 352 FFQWLKRQPGFKHDGHSYTTMIGILGQARQFGTMRKLLDEMNS-------------VHCK 398

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
                                 P  VTY+ I+  Y ++  + E + ++E    +G++PD 
Sbjct: 399 ----------------------PTVVTYNRIIHAYGRANYLREAVKVFEEMQKAGYEPDR 436

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           + +  L  +  + G  +    +   M+ +G+ P+   Y+ ++  +GK G    A  LF E
Sbjct: 437 VTYCTLIDIHAKGGYLEFAMDLYTRMQEVGLSPDTFTYSAMVNCLGKGGHLAAAYKLFCE 496

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           MVE+G TP+  T   +I +  KAR  ++ ++L++ M+   +  D I Y+ ++ +    G 
Sbjct: 497 MVENGCTPNLVTYNIMIALQAKARNYENVVKLYKDMQVAGFRPDKITYSIVMEVLGHCGH 556

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
           ++EAE +F +M+  D+  PD   Y  +++++G  GNVD A+  +  M + G+  NV  C 
Sbjct: 557 LDEAEAVFIEMR-HDWA-PDEPVYGLLVDLWGKAGNVDKALGWYHAMLQDGLQPNVPTCN 614

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQA 532
            L+    K  R  D   V    + +G+ P  +    LLS  +  E    +G     +   
Sbjct: 615 SLLSAFLKINRFQDAYSVLQNMLAQGLVPSLQTYTLLLSCCT--EAQAQMGLCCQLMAIT 672

Query: 533 NPKLVAFLNLIEDNSTGFENIKEE---FRNVIKDTEVDARRPFCNCLIDICRNRNLNERA 589
                 FL  + D   G +N+++    F +++   + +++R   + +ID      L E A
Sbjct: 673 GHPAHMFLLYLPDAEPGGQNVRDHTRYFLDMMHSEDRESKRGLMDAVIDFLHKSGLKEEA 732

Query: 590 HELLYLGTLYGLYP-GLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQ 648
             +  +     +YP  +  K    W +++  +S G A TAL   +    + +L     P+
Sbjct: 733 GFIWEVAAQRNVYPDSVREKDPSYWLINLHLMSEGTAVTALSRTLAWFHRQILTMGKCPE 792

Query: 649 LFLAETGTGTHKFSQGLATAFASHVNKLAA----PFRQSEGKAGCFVATREDLVSWVQ 702
                TG G      G +    S V KL      PF  + G  GCFV   E L  W+ 
Sbjct: 793 RIDIVTGWGRRSRVTGSSLVRQS-VQKLLHLFEFPFVTTRGNTGCFVGCGEPLNRWLH 849


>gi|297743996|emb|CBI36966.3| unnamed protein product [Vitis vinifera]
          Length = 730

 Score =  168 bits (426), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 170/712 (23%), Positives = 305/712 (42%), Gaps = 58/712 (8%)

Query: 24  IFLTKPTRRSH----PIKINISCNSKSSENVAAESPNPETKTLSLSEQLKPLSSTTLSPT 79
           I   KP +  H    P K + + +  SS  V+  +P P  +  +      P ++T     
Sbjct: 11  ITAAKPYQNLHYPQNPTKNHHNNHHWSSHKVSLTNPLPSPRNAAKPGAASPATATN---- 66

Query: 80  KNDRTPLLSKPKSTWVNPTKPRRSVLSLQRQKRSTYSYNPRVRDLKLFAR-----KLNDC 134
           +N   P LS        P  P +S L+     R +  +  ++     F R          
Sbjct: 67  RNSNFPSLS--------PLPPSKSELTADFSGRRSTRFVSKMH----FGRPKTAAAARHT 114

Query: 135 DNTEEAFLRAITEIPHQPTRENALLILNSLKFWQKSYFFF-----NWIKSQ---NLFPME 186
              EEA   AI         ++ LL   S       Y F      N   S    NL    
Sbjct: 115 STAEEALRHAIRFASDDKGIDSVLLNFESRLCGSDDYTFLLRELGNRGDSGLKPNLVTYN 174

Query: 187 TIFYNVTMKSLRFGRQFQLIEQ--LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEW 244
            +        + F R  ++ ++  L +EM+   IE D  TY+T++    +    D A + 
Sbjct: 175 AVIDACGKGGVDFNRAAEIFDEMNLFSEMLYRGIEQDIFTYNTLLDAVCKGGQMDLAFQI 234

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
              M +  +MP+ VTYS ++D YAK+G+++E L+L+     +    D ++++ L  ++ +
Sbjct: 235 MSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFASIGLDRVSYNTLLSIYAK 294

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
            G ++    V +EM+S G++ + V YN LL   GK GK    + +F+EM    + P+  T
Sbjct: 295 LGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMKAERIFPNLLT 354

Query: 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
            + LI +Y K    ++A+E++   ++     D +LY+ L++     GLVE A    ++M 
Sbjct: 355 YSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDALCKNGLVESAVSFLDEMT 414

Query: 425 LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC-----TCLIQCLG 479
             +  +P+  +Y ++++ +G  G V++A E      E    I + G      TC  +   
Sbjct: 415 -KEGIRPNVVTYNSIIDAFGRSGIVEDATESEVGDKEDNQIIKIFGQLAAEKTCHAKKEN 473

Query: 480 KARR-IDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKL-- 536
           + R+ I  ++ VF    +  +KP+      +L+  S C + ED   ++  L+  + ++  
Sbjct: 474 RGRQEILCILAVFHKMHELDIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYG 533

Query: 537 VAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLG 596
           VA   L+      +   +  F  V K  +      F N L D+  +      A  ++  G
Sbjct: 534 VAHGLLMGYGDNVWVQAQSLFDEV-KQMDSSTASAFYNALTDMLWHFGQRRGAQLVVLEG 592

Query: 597 TLYGLYPGLHNKTLDEWS---LDVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQLFLAE 653
               ++  +       WS   LD+  +S GAA+  +  W+  +  IV     LPQL    
Sbjct: 593 KRRHVWENM-------WSNSCLDLHLMSSGAARAMVHAWLLNIRSIVFEGHELPQLLSIL 645

Query: 654 TGTGTHKFSQG---LATAFASHVNKLAAPFRQSEGKAGCFVATREDLVSWVQ 702
           TG G H    G   L  A  + +  + APFR ++   G F++T   + +W++
Sbjct: 646 TGWGKHSKVVGDGALRRAIEALLTGMGAPFRVAKCNLGRFISTGAVVAAWLR 697


>gi|356540087|ref|XP_003538522.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
           chloroplastic-like [Glycine max]
          Length = 667

 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 107/344 (31%), Positives = 176/344 (51%), Gaps = 1/344 (0%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           WQ++    +WI  + L+      YNV ++++   +Q+ L   L +EM    +  D  TYS
Sbjct: 124 WQRALALLDWINDKALYRPSLFAYNVLLRNVLRAKQWHLAHGLFDEMRQKGLSPDRYTYS 183

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T+ITC  +  LFD ++ W ++M +  +  D V YS ++D+  K     + +S++ R  AS
Sbjct: 184 TLITCFGKHGLFDSSLFWLQQMEQDNVSGDLVLYSNLIDLARKLSDYSKAISIFSRLKAS 243

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
              PD IA++ +  +FG++  +   R +LQEM+   VQP+ V Y+TLL       K   A
Sbjct: 244 TITPDLIAYNSMINVFGKAKLFREARLLLQEMRDNAVQPDTVSYSTLLAIYVDNQKFVEA 303

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            SLF EM E+    D  T   +I +YG+    K+A  L+  MR+     + I YNTLL +
Sbjct: 304 LSLFSEMNEAKCPLDLTTCNIMIDVYGQLHMPKEADRLFWSMRKMGIQPNVISYNTLLRV 363

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
             +  L  EA  LF  M+  D  + +  +Y  M+NIYG     + A  L +EM++ G+  
Sbjct: 364 YGEADLFGEAIHLFRLMQSKD-VQQNVVTYNTMINIYGKTLEHEKATNLIQEMNKRGIEP 422

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
           N +  + +I    KA ++D    +F      GV+ D+ L   ++
Sbjct: 423 NAITYSTIISIWEKAGKLDRAAILFQKLRSSGVRIDEVLYQTMI 466



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 89/356 (25%), Positives = 170/356 (47%), Gaps = 6/356 (1%)

Query: 156 NALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVS 215
           N + +   L  + K+   F+ +K+  + P + I YN  +      + F+    L  EM  
Sbjct: 219 NLIDLARKLSDYSKAISIFSRLKASTITP-DLIAYNSMINVFGKAKLFREARLLLQEMRD 277

Query: 216 NEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEE 275
           N ++ D ++YST++        F EA+  F  M +     D  T + ++DVY +    +E
Sbjct: 278 NAVQPDTVSYSTLLAIYVDNQKFVEALSLFSEMNEAKCPLDLTTCNIMIDVYGQLHMPKE 337

Query: 276 VLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLE 335
              L+      G +P+ I+++ L +++GE+  +    ++ + M+S  VQ N+V YNT++ 
Sbjct: 338 ADRLFWSMRKMGIQPNVISYNTLLRVYGEADLFGEAIHLFRLMQSKDVQQNVVTYNTMIN 397

Query: 336 AMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPM 395
             GK  +   A +L  EM + G+ P+  T + +I I+ KA     A  L++++R +   +
Sbjct: 398 IYGKTLEHEKATNLIQEMNKRGIEPNAITYSTIISIWEKAGKLDRAAILFQKLRSSGVRI 457

Query: 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIEL 455
           D +LY T++      GLV  A+RL  ++K     +PDN      + I    G ++ A  +
Sbjct: 458 DEVLYQTMIVAYERTGLVAHAKRLLHELK-----RPDNIPRDTAIAILARAGRIEEATWV 512

Query: 456 FEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
           F +  +     ++    C+I    K ++  ++V VF    + G  PD  +   +L+
Sbjct: 513 FRQAFDAREVKDISVFGCMINLFSKNKKYANVVEVFEKMREVGYFPDSDVIALVLN 568



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 60/273 (21%), Positives = 131/273 (47%), Gaps = 5/273 (1%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
            I YN  ++       F     L   M S +++ + +TY+T+I    +    ++A    +
Sbjct: 354 VISYNTLLRVYGEADLFGEAIHLFRLMQSKDVQQNVVTYNTMINIYGKTLEHEKATNLIQ 413

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
            M K G+ P+ +TYS I+ ++ K+GK++    L+++  +SG + D + +  +   +  +G
Sbjct: 414 EMNKRGIEPNAITYSTIISIWEKAGKLDRAAILFQKLRSSGVRIDEVLYQTMIVAYERTG 473

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
                + +L E+K    +P+ +  +T +  + +AG+   A  +F +  ++    D     
Sbjct: 474 LVAHAKRLLHELK----RPDNIPRDTAIAILARAGRIEEATWVFRQAFDAREVKDISVFG 529

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
            +I ++ K +   + +E++E+MRE  +  D  +   +LN    +   ++A+ L+  M   
Sbjct: 530 CMINLFSKNKKYANVVEVFEKMREVGYFPDSDVIALVLNAFGKLREFDKADALYRQMHEE 589

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
               PD   +  ML++YG+  +      LFE++
Sbjct: 590 GCVFPDEVHFQ-MLSLYGARKDFVMVESLFEKL 621



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 106/244 (43%), Gaps = 38/244 (15%)

Query: 180 QNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFD 239
           QN+    T+  N+  K+L   +   LI+    EM    IE + ITYSTII+  ++    D
Sbjct: 387 QNVVTYNTMI-NIYGKTLEHEKATNLIQ----EMNKRGIEPNAITYSTIISIWEKAGKLD 441

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVY-------------------------------A 268
            A   F+++  +G+  DEV Y  ++  Y                               A
Sbjct: 442 RAAILFQKLRSSGVRIDEVLYQTMIVAYERTGLVAHAKRLLHELKRPDNIPRDTAIAILA 501

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           ++G++EE   ++ +   +    D   F  +  +F ++  Y  +  V ++M+ +G  P+  
Sbjct: 502 RAGRIEEATWVFRQAFDAREVKDISVFGCMINLFSKNKKYANVVEVFEKMREVGYFPDSD 561

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESG-LTPDEKTLTALIKIYGKARWAKDALELWER 387
           V   +L A GK  +   A +L+ +M E G + PDE     ++ +YG  +       L+E+
Sbjct: 562 VIALVLNAFGKLREFDKADALYRQMHEEGCVFPDEVHFQ-MLSLYGARKDFVMVESLFEK 620

Query: 388 MREN 391
           +  N
Sbjct: 621 LDSN 624



 Score = 47.8 bits (112), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 79/170 (46%), Gaps = 4/170 (2%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           DNI   T I    R    +EA   F + +    + D   +  ++++++K+ K   V+ ++
Sbjct: 489 DNIPRDTAIAILARAGRIEEATWVFRQAFDAREVKDISVFGCMINLFSKNKKYANVVEVF 548

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG-VQPNLVVYNTLLEAMGK 339
           E+    G+ PD    +++   FG+  ++D    + ++M   G V P+ V +  +L   G 
Sbjct: 549 EKMREVGYFPDSDVIALVLNAFGKLREFDKADALYRQMHEEGCVFPDEVHFQ-MLSLYGA 607

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALI-KIYGKARWAKDALELWERM 388
                +  SLF E ++S    ++K L  ++  IY +A    DA  +  RM
Sbjct: 608 RKDFVMVESLF-EKLDSNPNINKKELHLVVASIYERADRLNDASRIMNRM 656


>gi|356569143|ref|XP_003552765.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 118/427 (27%), Positives = 201/427 (47%), Gaps = 1/427 (0%)

Query: 84  TPLLSKPKSTWVNPTKPRRSVLSLQRQKRSTYSYNPRVRDLKLFARKLNDCDNTEEAFLR 143
           +P +S   +        R S  +  RQ+     Y  R  D++     +    N +E +  
Sbjct: 32  SPAISVAATAMAKDVWTRTSSSNTSRQRSRRQQYWDRSVDMEELLAAIGQTQNEDELYAV 91

Query: 144 AITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQF 203
                  Q +    + +L+    WQ++    +WI  + L+      YNV ++++   +Q+
Sbjct: 92  MSPYNGRQLSMRFMVSLLSREPDWQRALALLDWINDKALYSPSLFAYNVLLRNVLRAKQW 151

Query: 204 QLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAI 263
            L   L +EM    +  D  TYST+IT   +  LFD ++ W ++M +  +  D V YS +
Sbjct: 152 HLAHGLFDEMRQKGLSPDRYTYSTLITSFGKHGLFDSSLFWLQQMEQDNVSGDLVLYSNL 211

Query: 264 LDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGV 323
           +D+  K     + +S++ R  AS   PD IA++ +  +FG++  +   R +LQEM+   V
Sbjct: 212 IDLARKLSDYSKAISIFSRLKASTISPDLIAYNSMINVFGKAKLFREARLLLQEMRDNAV 271

Query: 324 QPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALE 383
           QP+ V Y+TLL       K   A SLF EM E+    D  T   +I +YG+    K+A  
Sbjct: 272 QPDTVSYSTLLAIYVDNQKFVEALSLFFEMNEAKCPLDLTTCNIMIDVYGQLHMPKEADR 331

Query: 384 LWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIY 443
           L+  MR+     + + YNTLL +  +  L  EA  LF  M+  D  + +  +Y  M+NIY
Sbjct: 332 LFWSMRKMGIQPNVVSYNTLLRVYGEADLFGEAIHLFRLMQSKD-VQQNVVTYNTMINIY 390

Query: 444 GSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
           G     + A  L +EM + G+  N +  + +I    KA ++D    +F      GV+ D+
Sbjct: 391 GKTLEHEKATNLIQEMKKRGIEPNAITYSTIISIWEKAGKLDRAAILFQKLRSSGVRIDE 450

Query: 504 RLCGCLL 510
            L   ++
Sbjct: 451 VLYQTMI 457



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 88/356 (24%), Positives = 169/356 (47%), Gaps = 6/356 (1%)

Query: 156 NALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVS 215
           N + +   L  + K+   F+ +K+  + P + I YN  +      + F+    L  EM  
Sbjct: 210 NLIDLARKLSDYSKAISIFSRLKASTISP-DLIAYNSMINVFGKAKLFREARLLLQEMRD 268

Query: 216 NEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEE 275
           N ++ D ++YST++        F EA+  F  M +     D  T + ++DVY +    +E
Sbjct: 269 NAVQPDTVSYSTLLAIYVDNQKFVEALSLFFEMNEAKCPLDLTTCNIMIDVYGQLHMPKE 328

Query: 276 VLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLE 335
              L+      G +P+ ++++ L +++GE+  +    ++ + M+S  VQ N+V YNT++ 
Sbjct: 329 ADRLFWSMRKMGIQPNVVSYNTLLRVYGEADLFGEAIHLFRLMQSKDVQQNVVTYNTMIN 388

Query: 336 AMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPM 395
             GK  +   A +L  EM + G+ P+  T + +I I+ KA     A  L++++R +   +
Sbjct: 389 IYGKTLEHEKATNLIQEMKKRGIEPNAITYSTIISIWEKAGKLDRAAILFQKLRSSGVRI 448

Query: 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIEL 455
           D +LY T++      GLV  A+RL  ++K     +PDN      + I    G ++ A  +
Sbjct: 449 DEVLYQTMIVAYERAGLVAHAKRLLHELK-----RPDNIPRDTAIGILARAGRIEEATWV 503

Query: 456 FEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
           F +  +     ++    C+I    K ++  ++V VF      G  PD  +   +L+
Sbjct: 504 FRQAFDAREVKDISVFGCMINLFSKNKKYGNVVEVFEKMRVVGYFPDSDVIALVLN 559



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/247 (21%), Positives = 123/247 (49%), Gaps = 5/247 (2%)

Query: 213 MVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK 272
           M S +++ + +TY+T+I    +    ++A    + M K G+ P+ +TYS I+ ++ K+GK
Sbjct: 371 MQSKDVQQNVVTYNTMINIYGKTLEHEKATNLIQEMKKRGIEPNAITYSTIISIWEKAGK 430

Query: 273 VEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNT 332
           ++    L+++  +SG + D + +  +   +  +G     + +L E+K    +P+ +  +T
Sbjct: 431 LDRAAILFQKLRSSGVRIDEVLYQTMIVAYERAGLVAHAKRLLHELK----RPDNIPRDT 486

Query: 333 LLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENK 392
            +  + +AG+   A  +F +  ++    D      +I ++ K +   + +E++E+MR   
Sbjct: 487 AIGILARAGRIEEATWVFRQAFDAREVKDISVFGCMINLFSKNKKYGNVVEVFEKMRVVG 546

Query: 393 WPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNA 452
           +  D  +   +LN    +   ++A+ L+  M       PD   +  ML++YG+  +    
Sbjct: 547 YFPDSDVIALVLNAFGKLREFDKADALYRQMHEEGCVFPDEVHFQ-MLSLYGARKDFVMV 605

Query: 453 IELFEEM 459
             LFE++
Sbjct: 606 ESLFEKL 612



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 106/244 (43%), Gaps = 38/244 (15%)

Query: 180 QNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFD 239
           QN+    T+  N+  K+L   +   LI+    EM    IE + ITYSTII+  ++    D
Sbjct: 378 QNVVTYNTMI-NIYGKTLEHEKATNLIQ----EMKKRGIEPNAITYSTIISIWEKAGKLD 432

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVY-------------------------------A 268
            A   F+++  +G+  DEV Y  ++  Y                               A
Sbjct: 433 RAAILFQKLRSSGVRIDEVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIGILA 492

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           ++G++EE   ++ +   +    D   F  +  +F ++  Y  +  V ++M+ +G  P+  
Sbjct: 493 RAGRIEEATWVFRQAFDAREVKDISVFGCMINLFSKNKKYGNVVEVFEKMRVVGYFPDSD 552

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESG-LTPDEKTLTALIKIYGKARWAKDALELWER 387
           V   +L A GK  +   A +L+ +M E G + PDE     ++ +YG  +       L+E+
Sbjct: 553 VIALVLNAFGKLREFDKADALYRQMHEEGCVFPDEVHFQ-MLSLYGARKDFVMVESLFEK 611

Query: 388 MREN 391
           +  N
Sbjct: 612 LDSN 615


>gi|414887392|tpg|DAA63406.1| TPA: hypothetical protein ZEAMMB73_124662 [Zea mays]
          Length = 795

 Score =  165 bits (418), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 175/324 (54%), Gaps = 2/324 (0%)

Query: 188 IFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
           + YNV   +  +    ++ +  L + M  + IE D  TY+T+I+C +R  L  EA + F+
Sbjct: 220 VTYNVVFHAYSKMSVPWKEVVALVDSMKEDGIERDRYTYNTLISCCRRRGLHREAAQVFD 279

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
            M   G  PD+VT++++LDVY K+ K EE + + +R   +G  P  + ++ L   + + G
Sbjct: 280 EMKAAGFEPDKVTFNSLLDVYGKARKHEEAIGVLKRMENAGCTPSVVTYNSLISAYVKDG 339

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
             +    + QEM+  G++P++V Y TL+  + + GK   A + + EMV +G +P+  T  
Sbjct: 340 LLEEALELKQEMEFRGMKPDVVTYTTLISGLDRVGKIDAALATYSEMVRNGCSPNLCTYN 399

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
           ALIK++G      + + +++ +R   +  D + +NTLL++    GL  E   +F++MK +
Sbjct: 400 ALIKLHGVRGKFTEMMAVFDDLRSAGYVPDVVTWNTLLSVFGQNGLDSEVSGVFKEMKKA 459

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
            Y  P+  +Y ++++ Y   G  D A+E+++ M E G+  ++     ++  L +  R + 
Sbjct: 460 GYI-PERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQ 518

Query: 487 LVRVFGVSIDRGVKPDDRLCGCLL 510
             ++F   +DR  KPD+     LL
Sbjct: 519 AEKLFAEMVDRDCKPDELSYSSLL 542



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 141/287 (49%), Gaps = 1/287 (0%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           TY ++I+   RC LFD+A+E ++RM + G+ PD  TY+A+L   A+ G+ E+   L+   
Sbjct: 467 TYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEM 526

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
           V    KPD +++S L   +  +   D ++ + +++ +  ++ +  +  TL+    K    
Sbjct: 527 VDRDCKPDELSYSSLLHAYANAKKLDKMKTLSEDIYAERIERHNWLVKTLVLVNNKVNNL 586

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
                 F E+     + D   L A++ IYGK +  K   E+   M EN        YN+L
Sbjct: 587 PETEKAFQELRRRRCSLDINVLNAMVSIYGKNKMVKKVEEVLSLMMENSINHSAATYNSL 646

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           ++M + +G  E+ E +  ++K S   +PD YSY  ++  YG  G +  A  LF EM   G
Sbjct: 647 MHMYSRLGDCEKCESILTEIK-SSGMRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSG 705

Query: 464 VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
           V  +++     I+        ++ + +    + +G +P++R    +L
Sbjct: 706 VKPDIVTYNIFIKSYVANIMFEEAIDLVRYLVTQGCRPNERTFNSIL 752



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 157/313 (50%), Gaps = 6/313 (1%)

Query: 255 PDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE-SGDYDGIRY 313
           PD   Y+A++  ++++G+  + +++++R V  G +P  + ++V+   + + S  +  +  
Sbjct: 182 PDASAYTALVSAFSRAGRFRDAVAVFQRMVDGGVQPALVTYNVVFHAYSKMSVPWKEVVA 241

Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYG 373
           ++  MK  G++ +   YNTL+    + G    A  +FDEM  +G  PD+ T  +L+ +YG
Sbjct: 242 LVDSMKEDGIERDRYTYNTLISCCRRRGLHREAAQVFDEMKAAGFEPDKVTFNSLLDVYG 301

Query: 374 KARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDN 433
           KAR  ++A+ + +RM         + YN+L++     GL+EEA  L ++M+     KPD 
Sbjct: 302 KARKHEEAIGVLKRMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRG-MKPDV 360

Query: 434 YSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGV 493
            +YT +++     G +D A+  + EM   G + N+     LI+  G   +  +++ VF  
Sbjct: 361 VTYTTLISGLDRVGKIDAALATYSEMVRNGCSPNLCTYNALIKLHGVRGKFTEMMAVFDD 420

Query: 494 SIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAFLNLIEDNSTG-- 549
               G  PD      LLSV        +V  V   +++A   P+   +++LI   S    
Sbjct: 421 LRSAGYVPDVVTWNTLLSVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGL 480

Query: 550 FENIKEEFRNVIK 562
           F+   E ++ +I+
Sbjct: 481 FDQAMEIYKRMIE 493



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 121/252 (48%), Gaps = 36/252 (14%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           +L  EM    ++ D +TY+T+I+   R    D A+  +  M + G  P+  TY+A++ ++
Sbjct: 346 ELKQEMEFRGMKPDVVTYTTLISGLDRVGKIDAALATYSEMVRNGCSPNLCTYNALIKLH 405

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
              GK  E++++++   ++G+ PD + ++ L  +FG++G    +  V +EMK  G  P  
Sbjct: 406 GVRGKFTEMMAVFDDLRSAGYVPDVVTWNTLLSVFGQNGLDSEVSGVFKEMKKAGYIPER 465

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
             Y +L+ +  + G    A  ++  M+E+G+ PD  T                       
Sbjct: 466 DTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDIST----------------------- 502

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
                       YN +L+  A  G  E+AE+LF +M   D CKPD  SY+++L+ Y +  
Sbjct: 503 ------------YNAVLSALARGGRWEQAEKLFAEMVDRD-CKPDELSYSSLLHAYANAK 549

Query: 448 NVDNAIELFEEM 459
            +D    L E++
Sbjct: 550 KLDKMKTLSEDI 561



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 121/260 (46%), Gaps = 7/260 (2%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           W+++   F  +  ++  P E + Y+  + +    ++   ++ L+ ++ +  IE  N    
Sbjct: 516 WEQAEKLFAEMVDRDCKPDE-LSYSSLLHAYANAKKLDKMKTLSEDIYAERIERHNWLVK 574

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG---KVEEVLSLYERG 283
           T++    + N   E  + F+ + +     D    +A++ +Y K+    KVEEVLSL    
Sbjct: 575 TLVLVNNKVNNLPETEKAFQELRRRRCSLDINVLNAMVSIYGKNKMVKKVEEVLSLM--- 631

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
           + +        ++ L  M+   GD +    +L E+KS G++P+   YNT++ A G+ G+ 
Sbjct: 632 MENSINHSAATYNSLMHMYSRLGDCEKCESILTEIKSSGMRPDRYSYNTVIYAYGRKGQM 691

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
             A  LF EM  SG+ PD  T    IK Y      ++A++L   +       +   +N++
Sbjct: 692 KEASRLFSEMKCSGVKPDIVTYNIFIKSYVANIMFEEAIDLVRYLVTQGCRPNERTFNSI 751

Query: 404 LNMCADIGLVEEAERLFEDM 423
           L   +  G + EA+    ++
Sbjct: 752 LQGYSRHGRMVEAKSFLSNL 771



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/213 (22%), Positives = 93/213 (43%), Gaps = 43/213 (20%)

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWER------------------------- 387
           ++E+   PD    TAL+  + +A   +DA+ +++R                         
Sbjct: 175 ILEAAPAPDASAYTALVSAFSRAGRFRDAVAVFQRMVDGGVQPALVTYNVVFHAYSKMSV 234

Query: 388 -----------MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY 436
                      M+E+    D   YNTL++ C   GL  EA ++F++MK + + +PD  ++
Sbjct: 235 PWKEVVALVDSMKEDGIERDRYTYNTLISCCRRRGLHREAAQVFDEMKAAGF-EPDKVTF 293

Query: 437 TAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496
            ++L++YG     + AI + + M   G   +V+    LI    K   +++ + +      
Sbjct: 294 NSLLDVYGKARKHEEAIGVLKRMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEF 353

Query: 497 RGVKPDDRLCGCLLSVVSLCETSEDVGKVITCL 529
           RG+KPD      +++  +L    + VGK+   L
Sbjct: 354 RGMKPD------VVTYTTLISGLDRVGKIDAAL 380



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/255 (21%), Positives = 109/255 (42%), Gaps = 48/255 (18%)

Query: 117 YNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTRENALLILNSLKFWQKSYFFFNW 176
           +N  V+ L L   K+N+   TE+AF         +  R    L +N L            
Sbjct: 569 HNWLVKTLVLVNNKVNNLPETEKAF--------QELRRRRCSLDINVLN----------- 609

Query: 177 IKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCN 236
                   M +I+    M         + +E++ + M+ N I     TY++++    R  
Sbjct: 610 -------AMVSIYGKNKM--------VKKVEEVLSLMMENSINHSAATYNSLMHMYSRLG 654

Query: 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS 296
             ++       +  +G+ PD  +Y+ ++  Y + G+++E   L+     SG KPD + ++
Sbjct: 655 DCEKCESILTEIKSSGMRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGVKPDIVTYN 714

Query: 297 VLGK------MFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
           +  K      MF E+ D   +RY++ +    G +PN   +N++L+   + G+   A+S  
Sbjct: 715 IFIKSYVANIMFEEAIDL--VRYLVTQ----GCRPNERTFNSILQGYSRHGRMVEAKSFL 768

Query: 351 DEM--VESGLTPDEK 363
             +  +  G++  EK
Sbjct: 769 SNLPKIYPGISKQEK 783


>gi|357159149|ref|XP_003578355.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18900-like [Brachypodium distachyon]
          Length = 857

 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 128/538 (23%), Positives = 232/538 (43%), Gaps = 48/538 (8%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           FF+W+K Q  F  +   Y   +  L   RQF ++  L +EM  +                
Sbjct: 350 FFHWLKRQPGFKHDGHTYTTMIGILGQARQFGIMRNLLHEMNRD---------------- 393

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            RC                   P  VTY+ I+  Y ++  + E + ++E    +G++PD 
Sbjct: 394 -RCK------------------PTVVTYNRIIHAYGRANYLREAVKVFEEMEEAGYEPDR 434

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           + +  L  +  ++G  +    +   M+ +G+ P+   Y+ ++  +GK G+   A  LF E
Sbjct: 435 VTYCTLIDIHAKAGYLEVAMDLYGRMQEVGLSPDTFTYSAMVNCLGKGGQLAAAYKLFCE 494

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M+E+G TP+  T   +I +  KAR   + ++L+  M+   +  D I Y+ ++ +    G 
Sbjct: 495 MIENGCTPNLVTYNIIIALQAKARNYDNVVKLYRDMQVAGFRPDKITYSIVMEVLGHCGH 554

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
           ++EAE +F +M+  D+  PD   Y  +++++G  GNVD A+  +  M + G+  NV  C 
Sbjct: 555 LDEAEAVFIEMR-RDWA-PDEPVYGLLVDLWGKAGNVDKALGWYHAMLQDGLQPNVPTCN 612

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQA 532
            L+    K  R  D   V    + +G+ P  +    LLS  +  +    +G     +   
Sbjct: 613 SLLSAFLKINRFQDAYSVLQNMLAQGLVPSLQTYTLLLSCCT--DAHAQMGLCCQLMAIT 670

Query: 533 NPKLVAFLNLIEDNSTGFENIKEE---FRNVIKDTEVDARRPFCNCLIDICRNRNLNERA 589
                 FL  + D   G EN+++    F +++   + +++R   + +ID      L E A
Sbjct: 671 GHPAHMFLLYLPDAEPGGENVRDHTRYFLDMMHSEDRESKRGLMDAVIDFLHKSGLKEEA 730

Query: 590 HELLYLGTLYGLYP-GLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQ 648
             +  +     +YP  +  K+   W +++  +S G A TAL   +    + +L     P+
Sbjct: 731 GFIWEVAAQKNVYPDSVREKSSAYWLINLHLMSEGTAVTALSRTLAWFHRQILVMGSCPE 790

Query: 649 LFLAETGTGTHKFSQGLATAFASHVNKLAA----PFRQSEGKAGCFVATREDLVSWVQ 702
                TG G      G +    S V KL      P   + G  GCFV   + L  W+ 
Sbjct: 791 RIDIVTGWGRRSRVTGSSLVRQS-VEKLLHLFQFPLFTARGNTGCFVGCGQPLNQWLH 847


>gi|255563768|ref|XP_002522885.1| ATP binding protein, putative [Ricinus communis]
 gi|223537870|gb|EEF39485.1| ATP binding protein, putative [Ricinus communis]
          Length = 427

 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 89/236 (37%), Positives = 140/236 (59%), Gaps = 4/236 (1%)

Query: 475 IQCLGKARRIDDLVRVFGVSIDR--GVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQA 532
           I+   K R +D   ++F   ++R  G+ PD+R CGCLL+V++     E + K+  C++ A
Sbjct: 188 IKVFRKCRDLDRAEKLFDEMLERESGITPDERFCGCLLNVLTQTPKKE-LDKLAECIETA 246

Query: 533 NPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHEL 592
           N KL   + L+  ++    N K+E   +   T  D ++ +CNCLID+C N NL ERA EL
Sbjct: 247 NTKLGFVVKLLITDAATEANFKKEAAELFDSTGADVKKAYCNCLIDLCVNLNLLERACEL 306

Query: 593 LYLGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQLFLA 652
           L LG    +Y  + +++  +WSL ++SLS+GAA TAL  W+  L+K +   + LP L   
Sbjct: 307 LDLGIKLEIYADIQSRSSTQWSLHLKSLSLGAALTALHVWINDLSKALESGDELPPLLGI 366

Query: 653 ETGTGTHKFS-QGLATAFASHVNKLAAPFRQSEGKAGCFVATREDLVSWVQARPSS 707
            TG G HK+S +GLA  F SH+ +L APF ++  K G F+ T+    SW+++R ++
Sbjct: 367 NTGHGKHKYSDKGLADVFESHLKELNAPFHEATDKVGWFLTTKVAAESWLESRKAT 422



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 7/124 (5%)

Query: 94  WVNPTKPRRSVLSLQRQKRSTYSYNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQPT 153
           WVNP  PR S L   ++K    SY+ R   L   +  LN C+  EE     +  +  +  
Sbjct: 95  WVNPKSPRASQL---KEK----SYDARYAFLLKVSESLNSCNPIEEDVCSVLDGLGDKIL 147

Query: 154 RENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEM 213
            ++A++++N++   + +     +   +  F  E I YNVT+K  R  R     E+L +EM
Sbjct: 148 NQDAVVVINNMSNAETALLALKYFLERLKFDKEVILYNVTIKVFRKCRDLDRAEKLFDEM 207

Query: 214 VSNE 217
           +  E
Sbjct: 208 LERE 211



 Score = 39.7 bits (91), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 31/130 (23%), Positives = 58/130 (44%), Gaps = 6/130 (4%)

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
           A  V+  M         ++Y L+ +K       +++YN  ++   K      A  LFDEM
Sbjct: 151 AVVVINNMSNAETALLALKYFLERLK---FDKEVILYNVTIKVFRKCRDLDRAEKLFDEM 207

Query: 354 V--ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411
           +  ESG+TPDE+    L+ +  +    K+  +L E +      + F++   + +   +  
Sbjct: 208 LERESGITPDERFCGCLLNVLTQTP-KKELDKLAECIETANTKLGFVVKLLITDAATEAN 266

Query: 412 LVEEAERLFE 421
             +EA  LF+
Sbjct: 267 FKKEAAELFD 276


>gi|255586139|ref|XP_002533731.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526356|gb|EEF28650.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 124/486 (25%), Positives = 227/486 (46%), Gaps = 31/486 (6%)

Query: 142 LRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSL-RFG 200
           +RA T I H  +R            + ++   F  +    L P   + YNV +    + G
Sbjct: 222 VRAYTTILHAYSRTGK---------YHRAIEIFERMNESGLSP-SLVTYNVMLDVYGKMG 271

Query: 201 RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTY 260
           R +  I +L +EM S  ++ D  T ST+++   R  L DEA E+F  +   G  P  VTY
Sbjct: 272 RSWDKILELLDEMRSRGLDFDEFTCSTVLSACGREGLIDEAREFFSGLKSEGYKPGTVTY 331

Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
           +A+L V+ K+G   E LS+      +   PD + ++ +   +  +G ++    V+  M S
Sbjct: 332 NALLHVFGKAGIFSEALSVLSEMEENNCPPDAVTYNEVVAAYVRAGFHEEGAVVIDAMAS 391

Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380
            G+ PN V Y T++ A G+ G    A  +FD+M+E G  P+  T  A++ + GK   +++
Sbjct: 392 KGIMPNAVTYTTIINAYGRVGDIDKALEMFDQMMELGCVPNVATYNAVLGMLGKKSLSEE 451

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
            +++   M+ N    + I +NT+L MC   G+ +   ++F +MK   + +PD  ++  ++
Sbjct: 452 MMKILGHMKLNGCSPNHITWNTMLAMCGKKGMHKYVNQVFREMKNCGF-EPDRDTFNTLI 510

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID---R 497
           + YG  G+ ++A ++ EEM + G +  +     L+  L  ARR  D      V +D   +
Sbjct: 511 SAYGRCGSNNDAAKMHEEMIKAGFSPCINTYNALLNAL--ARR-GDWKAAESVILDMRNK 567

Query: 498 GVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAFLNLIEDN--STGFENI 553
           G +P +     ++   +     + +  +   +   +  P  +    L+  N        +
Sbjct: 568 GFRPSETSYSLMVHSYAKGGNVKGIEMIEKSIYDGDIFPSWMLLRTLVLANFKCRSLTGM 627

Query: 554 KEEFRNVIKDTEVDARRP---FCNCLIDICRNRNLNERAHELLYLGTLYGLYPGL--HNK 608
           +  F+ + K       +P    CN ++ I    N+ +RAHE+L L    GL P L  HN 
Sbjct: 628 ERAFQALQK----HGYKPDLVLCNSMLSIFAKNNMYDRAHEMLRLIHDAGLQPDLVTHNS 683

Query: 609 TLDEWS 614
            +D ++
Sbjct: 684 LMDMYA 689



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 107/389 (27%), Positives = 182/389 (46%), Gaps = 10/389 (2%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLA--NEMVSNEIELDNITYSTIIT 230
           FF+ +KS+   P  T+ YN  +    FG+     E L+  +EM  N    D +TY+ ++ 
Sbjct: 315 FFSGLKSEGYKP-GTVTYNALLHV--FGKAGIFSEALSVLSEMEENNCPPDAVTYNEVVA 371

Query: 231 CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
              R    +E     + M   G+MP+ VTY+ I++ Y + G +++ L ++++ +  G  P
Sbjct: 372 AYVRAGFHEEGAVVIDAMASKGIMPNAVTYTTIINAYGRVGDIDKALEMFDQMMELGCVP 431

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
           +   ++ +  M G+    + +  +L  MK  G  PN + +NT+L   GK G       +F
Sbjct: 432 NVATYNAVLGMLGKKSLSEEMMKILGHMKLNGCSPNHITWNTMLAMCGKKGMHKYVNQVF 491

Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
            EM   G  PD  T   LI  YG+     DA ++ E M +  +      YN LLN  A  
Sbjct: 492 REMKNCGFEPDRDTFNTLISAYGRCGSNNDAAKMHEEMIKAGFSPCINTYNALLNALARR 551

Query: 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE-MSELGVAINVM 469
           G  + AE +  DM+   + +P   SY+ M++ Y  GGNV   IE+ E+ + +  +  + M
Sbjct: 552 GDWKAAESVILDMRNKGF-RPSETSYSLMVHSYAKGGNV-KGIEMIEKSIYDGDIFPSWM 609

Query: 470 GCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCL 529
               L+    K R +  + R F      G KPD  LC  +LS+ +     +   +++  +
Sbjct: 610 LLRTLVLANFKCRSLTGMERAFQALQKHGYKPDLVLCNSMLSIFAKNNMYDRAHEMLRLI 669

Query: 530 QQAN--PKLVAFLNLIEDNSTGFENIKEE 556
             A   P LV   +L++  + G +  K E
Sbjct: 670 HDAGLQPDLVTHNSLMDMYARGGDCWKAE 698



 Score = 92.4 bits (228), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 75/364 (20%), Positives = 150/364 (41%), Gaps = 77/364 (21%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
           + M S  I  + +TY+TII    R    D+A+E F++M + G +P+  TY+A+L +  K 
Sbjct: 387 DAMASKGIMPNAVTYTTIINAYGRVGDIDKALEMFDQMMELGCVPNVATYNAVLGMLGKK 446

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
              EE++ +      +G  P+ I ++ +  M G+ G +  +  V +EMK+ G +P+   +
Sbjct: 447 SLSEEMMKILGHMKLNGCSPNHITWNTMLAMCGKKGMHKYVNQVFREMKNCGFEPDRDTF 506

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVES---------------------------------- 356
           NTL+ A G+ G    A  + +EM+++                                  
Sbjct: 507 NTLISAYGRCGSNNDAAKMHEEMIKAGFSPCINTYNALLNALARRGDWKAAESVILDMRN 566

Query: 357 -GLTPDEKTLTALIKIYGKARWAK------------DALELW------------------ 385
            G  P E + + ++  Y K    K            D    W                  
Sbjct: 567 KGFRPSETSYSLMVHSYAKGGNVKGIEMIEKSIYDGDIFPSWMLLRTLVLANFKCRSLTG 626

Query: 386 -----ERMRENKWPMDFILYNTLLNMCADIGLVEEAE---RLFEDMKLSDYCKPDNYSYT 437
                + ++++ +  D +L N++L++ A   + + A    RL  D  L    +PD  ++ 
Sbjct: 627 MERAFQALQKHGYKPDLVLCNSMLSIFAKNNMYDRAHEMLRLIHDAGL----QPDLVTHN 682

Query: 438 AMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDR 497
           +++++Y  GG+   A E+   +   G   +++    +I+   +   + + +R+       
Sbjct: 683 SLMDMYARGGDCWKAEEVLRMLQTSGGKPDLVSYNTVIKGFCRKGLMQEGIRILSEMTSI 742

Query: 498 GVKP 501
           GV P
Sbjct: 743 GVGP 746



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 109/218 (50%), Gaps = 9/218 (4%)

Query: 177 IKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCN 236
           I   ++FP   +   + + + +  R    +E+    +  +  + D +  +++++   + N
Sbjct: 599 IYDGDIFPSWMLLRTLVLANFKC-RSLTGMERAFQALQKHGYKPDLVLCNSMLSIFAKNN 657

Query: 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG---KVEEVLSLYERGVASGWKPDPI 293
           ++D A E    ++  GL PD VT+++++D+YA+ G   K EEVL + +    SG KPD +
Sbjct: 658 MYDRAHEMLRLIHDAGLQPDLVTHNSLMDMYARGGDCWKAEEVLRMLQ---TSGGKPDLV 714

Query: 294 AFSVLGKMFGESG-DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           +++ + K F   G   +GIR +L EM S+GV P +  YNT +      G       +   
Sbjct: 715 SYNTVIKGFCRKGLMQEGIR-ILSEMTSIGVGPCIFTYNTFISGYAAQGMFTEINDVISY 773

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
           M+     P+E T   +   Y KAR   +A++   ++++
Sbjct: 774 MIVHNCRPNELTYKIVADGYCKARRYDEAIDFVSKIKD 811



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 85/403 (21%), Positives = 163/403 (40%), Gaps = 53/403 (13%)

Query: 130 KLNDCDNTEEAF--LRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMET 187
           ++ D D   E F  +  +  +P+  T    L +L      ++       +K     P   
Sbjct: 410 RVGDIDKALEMFDQMMELGCVPNVATYNAVLGMLGKKSLSEEMMKILGHMKLNGCSP-NH 468

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           I +N  +         + + Q+  EM +   E D  T++T+I+   RC   ++A +  E 
Sbjct: 469 ITWNTMLAMCGKKGMHKYVNQVFREMKNCGFEPDRDTFNTLISAYGRCGSNNDAAKMHEE 528

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M K G  P   TY+A+L+  A+ G  +   S+       G++P   ++S++   + + G+
Sbjct: 529 MIKAGFSPCINTYNALLNALARRGDWKAAESVILDMRNKGFRPSETSYSLMVHSYAKGGN 588

Query: 308 YDGIRYV-----------------------------------LQEMKSLGVQPNLVVYNT 332
             GI  +                                    Q ++  G +P+LV+ N+
Sbjct: 589 VKGIEMIEKSIYDGDIFPSWMLLRTLVLANFKCRSLTGMERAFQALQKHGYKPDLVLCNS 648

Query: 333 LLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENK 392
           +L    K      A  +   + ++GL PD  T  +L+ +Y +      A E+   ++ + 
Sbjct: 649 MLSIFAKNNMYDRAHEMLRLIHDAGLQPDLVTHNSLMDMYARGGDCWKAEEVLRMLQTSG 708

Query: 393 WPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNA 452
              D + YNT++      GL++E  R+  +M  S    P  ++Y   ++ Y + G     
Sbjct: 709 GKPDLVSYNTVIKGFCRKGLMQEGIRILSEMT-SIGVGPCIFTYNTFISGYAAQG----- 762

Query: 453 IELFEEMSELGVAINVMGC-----TCLIQCLG--KARRIDDLV 488
             +F E++++   + V  C     T  I   G  KARR D+ +
Sbjct: 763 --MFTEINDVISYMIVHNCRPNELTYKIVADGYCKARRYDEAI 803



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 78/182 (42%), Gaps = 4/182 (2%)

Query: 361 DEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLF 420
           D   +  +++I G+      A +L++ +  + + +D   Y T+L+  +  G    A  +F
Sbjct: 186 DRHAIELMVRILGRESQHTVASKLFDVIPLDDYVLDVRAYTTILHAYSRTGKYHRAIEIF 245

Query: 421 EDMKLSDYCKPDNYSYTAMLNIYGSGGNV-DNAIELFEEMSELGVAINVMGCTCLIQCLG 479
           E M  S    P   +Y  ML++YG  G   D  +EL +EM   G+  +   C+ ++   G
Sbjct: 246 ERMNESG-LSPSLVTYNVMLDVYGKMGRSWDKILELLDEMRSRGLDFDEFTCSTVLSACG 304

Query: 480 KARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLV 537
           +   ID+    F      G KP       LL V        +   V++ +++ N  P  V
Sbjct: 305 REGLIDEAREFFSGLKSEGYKPGTVTYNALLHVFGKAGIFSEALSVLSEMEENNCPPDAV 364

Query: 538 AF 539
            +
Sbjct: 365 TY 366



 Score = 39.7 bits (91), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 39/196 (19%), Positives = 80/196 (40%), Gaps = 13/196 (6%)

Query: 121 VRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTRENALLILNSL-------KFWQKSYFF 173
           +R L L   K       E AF +A+ +  ++P     L++ NS+         + +++  
Sbjct: 611 LRTLVLANFKCRSLTGMERAF-QALQKHGYKPD----LVLCNSMLSIFAKNNMYDRAHEM 665

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
              I    L P + + +N  M     G      E++   + ++  + D ++Y+T+I    
Sbjct: 666 LRLIHDAGLQP-DLVTHNSLMDMYARGGDCWKAEEVLRMLQTSGGKPDLVSYNTVIKGFC 724

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
           R  L  E I     M   G+ P   TY+  +  YA  G   E+  +    +    +P+ +
Sbjct: 725 RKGLMQEGIRILSEMTSIGVGPCIFTYNTFISGYAAQGMFTEINDVISYMIVHNCRPNEL 784

Query: 294 AFSVLGKMFGESGDYD 309
            + ++   + ++  YD
Sbjct: 785 TYKIVADGYCKARRYD 800


>gi|297734042|emb|CBI15289.3| unnamed protein product [Vitis vinifera]
          Length = 793

 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 141/598 (23%), Positives = 254/598 (42%), Gaps = 87/598 (14%)

Query: 28  KPTRRSHPIKINISCNSKSSENVAAESPNPETKTLSLSEQLKPLSSTTLSPTKNDRTPLL 87
           KP R+    K+     ++SS N+AA S +  +             ST     K+      
Sbjct: 211 KPIRKGKFSKVR----AESSANIAAASNSTSS-----------YHSTRGKGDKSGSVKGC 255

Query: 88  SKPKSTWVNPTKPRRSVLSLQRQKRS----TYSYNPR-----------VRDLKLF----- 127
           S    TW   T   RS+ S    KRS    + +Y+             +RD K+      
Sbjct: 256 SHVGDTWTRNTVDTRSLSSDTHNKRSMPQKSKAYSNYSTSNSNFNSNPLRDTKMIGIAPV 315

Query: 128 ARKLNDCDNTEEAFLRAITEIPHQPTRENALLILNSL-KFWQKSYF------------FF 174
           +R+     +  E   R + ++   P  E AL  LN L   +Q +              FF
Sbjct: 316 SRQFGSSGHVVENVSRILRQLSWGPAAEEALRNLNCLMDAYQANQVLKQIQDHPVALGFF 375

Query: 175 NWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKR 234
            W+K Q  F  +   Y   +  L   RQF  I +L  EMV +  + + +TY+ +I    R
Sbjct: 376 YWLKRQTGFKHDGHTYTTMVGILGRARQFGAINKLLAEMVRDGCQPNVVTYNRLIHSYGR 435

Query: 235 CNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIA 294
            N  +EA+  F+RM + G  PD VTY  ++D++AK+G ++  L +Y++   +   PD   
Sbjct: 436 ANYLNEAVSVFDRMQEAGCQPDRVTYCTLIDIHAKAGFLDVALHMYQKMQEAHLSPDTFT 495

Query: 295 FSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMV 354
           +SV+    G++G       +  EM   G  PNLV YN ++    KA     A  L+ +M 
Sbjct: 496 YSVIINCLGKAGHLTSAHKLFCEMVDQGCVPNLVTYNIMIALQAKARNYPTALELYRDMQ 555

Query: 355 ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
            +G  PD+ T + ++++ G     ++A  ++  M+   W  D  +Y  L+++   +G VE
Sbjct: 556 NAGFQPDKVTYSIVMEVLGHCGHLEEAEAIFTEMKRKNWVPDEPVYGLLVDLWGKVGNVE 615

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
           ++   ++ M  +  C P+  +  ++L+ +     + +A  L + M  LG+  ++   T L
Sbjct: 616 KSWEWYQAMLNAGLC-PNVPTCNSLLSAFLRVHRLSDAYNLLQSMLRLGLQPSLQTYTLL 674

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANP 534
           + C  +AR           S D G       CG L++V                    +P
Sbjct: 675 LSCCTEARS----------SFDMG------FCGELMAVT------------------GHP 700

Query: 535 KLVAFLNLIEDNSTGFENIKE---EFRNVIKDTEVDARRPFCNCLIDICRNRNLNERA 589
             +  L++      G +N+++   +F +++   + +++R   + ++D      L E A
Sbjct: 701 AHMFLLSMPAAGPDG-QNVRDHVSKFLDLMHSEDRESKRGLVDAVVDFLHKSGLKEEA 757



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 140/296 (47%), Gaps = 6/296 (2%)

Query: 319 KSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWA 378
           +  G + +   Y T++  +G+A + G    L  EMV  G  P+  T   LI  YG+A + 
Sbjct: 380 RQTGFKHDGHTYTTMVGILGRARQFGAINKLLAEMVRDGCQPNVVTYNRLIHSYGRANYL 439

Query: 379 KDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTA 438
            +A+ +++RM+E     D + Y TL+++ A  G ++ A  +++ M+ + +  PD ++Y+ 
Sbjct: 440 NEAVSVFDRMQEAGCQPDRVTYCTLIDIHAKAGFLDVALHMYQKMQEA-HLSPDTFTYSV 498

Query: 439 MLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRG 498
           ++N  G  G++ +A +LF EM + G   N++    +I    KAR     + ++    + G
Sbjct: 499 IINCLGKAGHLTSAHKLFCEMVDQGCVPNLVTYNIMIALQAKARNYPTALELYRDMQNAG 558

Query: 499 VKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAFLNLIEDNSTGFENIKE- 555
            +PD      ++ V+  C   E+   + T +++ N  P    +  L+ D      N+++ 
Sbjct: 559 FQPDKVTYSIVMEVLGHCGHLEEAEAIFTEMKRKNWVPDEPVY-GLLVDLWGKVGNVEKS 617

Query: 556 -EFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTL 610
            E+   + +  +    P CN L+      +    A+ LL      GL P L   TL
Sbjct: 618 WEWYQAMLNAGLCPNVPTCNSLLSAFLRVHRLSDAYNLLQSMLRLGLQPSLQTYTL 673


>gi|255552808|ref|XP_002517447.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543458|gb|EEF44989.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 654

 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 117/446 (26%), Positives = 214/446 (47%), Gaps = 6/446 (1%)

Query: 68  LKPLSSTTLSPTKNDRTPLLSKPKST---WVNPTKPRRSVLSLQRQKRSTYSYNPRVRDL 124
           L P+ S  L P    R    S+P +T    ++ +  +R + +  R +++T SY     D+
Sbjct: 14  LDPIFSLPLLPLPKSRIYTFSRPITTRFLLLSSSATKRDMWT--RTQKTTPSYLDHSVDM 71

Query: 125 KLFARKLNDCDNTEEAFLRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFP 184
           K     ++   N  E +         Q +    + +++    WQ+S    +WI     + 
Sbjct: 72  KQLLISISQTQNEVELYSLLSPYKERQLSIRFMVSLISQEADWQRSLALLDWINEVARYS 131

Query: 185 METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEW 244
                YNV ++++   +++ L   L +EM    +  D  TYST+IT   +  +FDE++ W
Sbjct: 132 PSVFAYNVVLRNVLRAKKWDLAHGLFDEMRQRALSPDRYTYSTLITSFGKAGMFDESLFW 191

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
            ++M +  +  D V YS ++++  K     + +S++ R   SG  PD +A++ +  +FG+
Sbjct: 192 LQQMEQDRVSGDLVLYSNLIELSRKLCDYSKAISIFMRLKRSGITPDLVAYNSMINVFGK 251

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
           +  +   R ++ EM+ +GV P+ V Y+TLL    +  K   A S+F EM E+  + D  T
Sbjct: 252 ARLFREARMLVHEMREVGVLPDTVSYSTLLSVYVENEKFVEALSVFAEMNEANCSLDLMT 311

Query: 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
              +I +YG+    K+A  L+  MR+     + + YNTLL +  +  L  EA  LF  M+
Sbjct: 312 CNIMIDVYGQLDMVKEADRLFWSMRKMGIEPNVVSYNTLLKVYGEAELFGEAIHLFRLMQ 371

Query: 425 LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484
             +  + +  +Y  M+ IYG     + A  L +EM + G+  N +  + +I   GKA ++
Sbjct: 372 RKE-IEQNVVTYNTMIKIYGKSLEHEKATNLVQEMQKRGIEPNAITYSTIISIWGKAGKL 430

Query: 485 DDLVRVFGVSIDRGVKPDDRLCGCLL 510
           D    +F      GV+ D  L   ++
Sbjct: 431 DRAAMLFQKLRSSGVEIDQVLYQTMI 456



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 89/365 (24%), Positives = 172/365 (47%), Gaps = 6/365 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F  +K   + P + + YN  +      R F+    L +EM    +  D ++YS
Sbjct: 220 YSKAISIFMRLKRSGITP-DLVAYNSMINVFGKARLFREARMLVHEMREVGVLPDTVSYS 278

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T+++       F EA+  F  M +     D +T + ++DVY +   V+E   L+      
Sbjct: 279 TLLSVYVENEKFVEALSVFAEMNEANCSLDLMTCNIMIDVYGQLDMVKEADRLFWSMRKM 338

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L K++GE+  +    ++ + M+   ++ N+V YNT+++  GK+ +   A
Sbjct: 339 GIEPNVVSYNTLLKVYGEAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKA 398

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM + G+ P+  T + +I I+GKA     A  L++++R +   +D +LY T++  
Sbjct: 399 TNLVQEMQKRGIEPNAITYSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVA 458

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  D+K  D    D       + I    G ++ A  +F +  + G   
Sbjct: 459 YERAGLVAHAKRLLHDLKCPDIIPRDT-----AIKILARAGRIEEATWVFRQAFDAGEVK 513

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           ++    C+I+   + +R  ++V VF      G  PD  +   +L+        E    V 
Sbjct: 514 DISVFRCMIELFSRNKRPANVVEVFEKMRGAGYFPDSDVIALVLNAYGKLREFEKADAVY 573

Query: 527 TCLQQ 531
             +Q+
Sbjct: 574 REMQE 578



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/278 (21%), Positives = 120/278 (43%), Gaps = 5/278 (1%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
            + YN  +K      + +    L  EM    IE + ITYSTII+   +    D A   F+
Sbjct: 379 VVTYNTMIKIYGKSLEHEKATNLVQEMQKRGIEPNAITYSTIISIWGKAGKLDRAAMLFQ 438

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
           ++  +G+  D+V Y  ++  Y ++G V       +R +     PD I      K+   +G
Sbjct: 439 KLRSSGVEIDQVLYQTMIVAYERAGLVAHA----KRLLHDLKCPDIIPRDTAIKILARAG 494

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
             +   +V ++    G   ++ V+  ++E   +  +P     +F++M  +G  PD   + 
Sbjct: 495 RIEEATWVFRQAFDAGEVKDISVFRCMIELFSRNKRPANVVEVFEKMRGAGYFPDSDVIA 554

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
            ++  YGK R  + A  ++  M+E +      ++  +L++          E LFE +  S
Sbjct: 555 LVLNAYGKLREFEKADAVYREMQEEECVFPDEVHFQMLSLYGARKDFIMVESLFEKLD-S 613

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
           D        +  + +IY     +++A  +   MS+ G+
Sbjct: 614 DPNINKKELHLVVASIYERQNRLNDASRIMNRMSKEGM 651


>gi|357162065|ref|XP_003579293.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Brachypodium distachyon]
          Length = 858

 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 135/547 (24%), Positives = 245/547 (44%), Gaps = 28/547 (5%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           +F  +    L P    F ++     R G   +    L +EM+   I  D  TY+T I   
Sbjct: 291 YFRQMLRDRLCPDRKTFNSLLSACSRAG-HLEDARALFDEMIHLGIGRDIYTYNTFIDAI 349

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +C   + A++    M    + P+ VTYS ++D Y+K  K +E L LYE+  + G + D 
Sbjct: 350 CKCGNIELAMQVLLDMEAKNVKPNVVTYSTLIDGYSKLEKYDEALKLYEKMKSLGIQLDR 409

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           + ++ +  ++ ++G Y  I  V  EM+  G++ + V YN+L+   GK G+  +   L  +
Sbjct: 410 VCYNTVLAIYVKAGKYGEIAIVCDEMEDSGIEKDTVTYNSLINGYGKQGRLDIVSFLVQD 469

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M   G+ P   T + LI IY KA    DA  ++   +E+    D +L+++ ++  A  GL
Sbjct: 470 MRRRGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKPDVVLFSSFIDTLAKNGL 529

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV-------A 465
           VE A  L  DM      KP+  +Y  +++ +G    +        EM  +GV       A
Sbjct: 530 VEWALSLLNDMTEMG-IKPNVVTYNTIIDAFGKSKVLSEEDPEAGEMGIVGVYNGQIIRA 588

Query: 466 IN--VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVG 523
            N    G + +   + +++ +  ++ +F   + +GV+P+      +L+  S C   ED  
Sbjct: 589 ANPVTRGRSAIDVRMRRSQELYFILELFQKMVQQGVRPNVVTFSAILNACSRCNNFEDAA 648

Query: 524 KVITCLQQANPKL--VAFLNLIEDNSTGFENI---KEEFRNVIKDTEVDARRPFCNCLID 578
            ++  L+  +  +  VA+  L+     G++ I    +   N +   +      F N L D
Sbjct: 649 LLLEQLRLFDNFVYGVAYGLLM-----GYQEIWSQAQSLFNQLGRMDSPTSSAFYNALTD 703

Query: 579 ICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAK 638
           +  +    + A     L  L G+   + + T  E+ LD+  +S GAAQ  +  W+  +  
Sbjct: 704 VLWHFGQRQGAQ----LVVLEGVNRRVWDNTWSEFCLDLHLMSCGAAQAMVHAWLLNVRS 759

Query: 639 IVLREEVLPQLFLAETGTGTHKFSQGLAT---AFASHVNKLAAPFRQSEGKAGCFVATRE 695
           IV     +P+     TG G H    G +T      + +N + APF+      G FV+   
Sbjct: 760 IVFEGRAMPEFLSILTGWGKHSKIAGASTLRHVIEALLNSIGAPFQVERFNIGRFVSPSA 819

Query: 696 DLVSWVQ 702
            + +W++
Sbjct: 820 VVAAWLR 826



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 82/278 (29%), Positives = 134/278 (48%), Gaps = 2/278 (0%)

Query: 226 STIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG-KVEEVLSLYERGV 284
           S +I+   R  L +EA+   E M   GL P  VTY+A++D   K G  +   L  + + +
Sbjct: 237 SALISAYARSGLVNEAMGVLESMKGAGLRPTTVTYNAVIDACGKGGVDLRFTLGYFRQML 296

Query: 285 ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344
                PD   F+ L      +G  +  R +  EM  LG+  ++  YNT ++A+ K G   
Sbjct: 297 RDRLCPDRKTFNSLLSACSRAGHLEDARALFDEMIHLGIGRDIYTYNTFIDAICKCGNIE 356

Query: 345 LARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
           LA  +  +M    + P+  T + LI  Y K     +AL+L+E+M+     +D + YNT+L
Sbjct: 357 LAMQVLLDMEAKNVKPNVVTYSTLIDGYSKLEKYDEALKLYEKMKSLGIQLDRVCYNTVL 416

Query: 405 NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
            +    G   E   + ++M+ S   K D  +Y +++N YG  G +D    L ++M   GV
Sbjct: 417 AIYVKAGKYGEIAIVCDEMEDSGIEK-DTVTYNSLINGYGKQGRLDIVSFLVQDMRRRGV 475

Query: 465 AINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           A +V+  + LI    KA    D   V+    + G+KPD
Sbjct: 476 APSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKPD 513



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 108/224 (48%), Gaps = 2/224 (0%)

Query: 280 YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
           ++ G+A G+     A S L   +  SG  +    VL+ MK  G++P  V YN +++A GK
Sbjct: 221 FDAGIAGGYGNTVFANSALISAYARSGLVNEAMGVLESMKGAGLRPTTVTYNAVIDACGK 280

Query: 340 AGKP-GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFI 398
            G         F +M+   L PD KT  +L+    +A   +DA  L++ M       D  
Sbjct: 281 GGVDLRFTLGYFRQMLRDRLCPDRKTFNSLLSACSRAGHLEDARALFDEMIHLGIGRDIY 340

Query: 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458
            YNT ++     G +E A ++  DM+  +  KP+  +Y+ +++ Y      D A++L+E+
Sbjct: 341 TYNTFIDAICKCGNIELAMQVLLDMEAKN-VKPNVVTYSTLIDGYSKLEKYDEALKLYEK 399

Query: 459 MSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           M  LG+ ++ +    ++    KA +  ++  V     D G++ D
Sbjct: 400 MKSLGIQLDRVCYNTVLAIYVKAGKYGEIAIVCDEMEDSGIEKD 443


>gi|242046162|ref|XP_002460952.1| hypothetical protein SORBIDRAFT_02g038080 [Sorghum bicolor]
 gi|241924329|gb|EER97473.1| hypothetical protein SORBIDRAFT_02g038080 [Sorghum bicolor]
          Length = 796

 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 172/317 (54%), Gaps = 2/317 (0%)

Query: 188 IFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
           + YNV +    +    ++ +  L + M  + IELD  TY+T+I+C +R  L+ EA + F+
Sbjct: 221 VTYNVVLHVYSKMSVPWKEVVVLVDSMKEDGIELDRYTYNTLISCCRRRGLYREAAQMFD 280

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
            M   G  PD+VT++++LDVY K+ + EE + + ++   +G  P  + ++ L   + + G
Sbjct: 281 EMKAAGFEPDKVTFNSLLDVYGKARRHEEAIGVLKKMENAGCTPSVVTYNSLISAYVKDG 340

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
             +    + QEM+  G++P++V Y TL+  + + GK   A + + EMV +G +P+  T  
Sbjct: 341 LLEEALELKQEMEFRGMKPDVVTYTTLISGLDRIGKIDAALATYSEMVRNGCSPNLCTYN 400

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
           ALIK++G      + + +++ +R   +  D + +NTLL +    GL  E   +F++MK +
Sbjct: 401 ALIKMHGVRGKFTEMMIVFDDLRSAGYVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKA 460

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
            Y  P+  +Y ++++ Y   G  D A+E+++ M E G+  ++     ++  L +  R   
Sbjct: 461 GYI-PERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALARGGRWVQ 519

Query: 487 LVRVFGVSIDRGVKPDD 503
             ++F    DR  KPD+
Sbjct: 520 AEKLFAEMEDRDCKPDE 536



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 141/287 (49%), Gaps = 1/287 (0%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           TY ++I+   RC LFD+A+E ++RM + G+ PD  TY+A+L   A+ G+  +   L+   
Sbjct: 468 TYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALARGGRWVQAEKLFAEM 527

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
                KPD +++S L   +  +   D ++ + +++ +  ++P+  +  TL+    K    
Sbjct: 528 EDRDCKPDELSYSSLLHAYANAKKLDKMKALSEDIYAQRIEPHNWLVKTLVLVNNKVNSL 587

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
                 F E+     + D   L A++ IYGK +  K   E+   M+EN        YN+L
Sbjct: 588 SETEKAFQELRRRRCSLDINVLNAMVSIYGKNKMVKKVEEVLTLMKENSINHSAATYNSL 647

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           ++M + +G  E+ E +  ++K S   +PD YSY  ++  YG  G +  A  LF EM   G
Sbjct: 648 MHMYSRLGDCEKCEAILTEIK-SSGMRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSG 706

Query: 464 VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
           V  +++     I+        ++ + +    + +G KP++R    +L
Sbjct: 707 VKPDIVTYNIFIKSYVANLMFEEAIDLVRYLVAQGCKPNERTYNSIL 753



 Score =  115 bits (288), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 157/313 (50%), Gaps = 6/313 (1%)

Query: 255 PDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE-SGDYDGIRY 313
           PD   Y+A++  ++++G+  + ++++ R V  G +P  + ++V+  ++ + S  +  +  
Sbjct: 183 PDASAYTALVSEFSRAGRFRDAVAVFRRMVDGGVQPALVTYNVVLHVYSKMSVPWKEVVV 242

Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYG 373
           ++  MK  G++ +   YNTL+    + G    A  +FDEM  +G  PD+ T  +L+ +YG
Sbjct: 243 LVDSMKEDGIELDRYTYNTLISCCRRRGLYREAAQMFDEMKAAGFEPDKVTFNSLLDVYG 302

Query: 374 KARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDN 433
           KAR  ++A+ + ++M         + YN+L++     GL+EEA  L ++M+     KPD 
Sbjct: 303 KARRHEEAIGVLKKMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRG-MKPDV 361

Query: 434 YSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGV 493
            +YT +++     G +D A+  + EM   G + N+     LI+  G   +  +++ VF  
Sbjct: 362 VTYTTLISGLDRIGKIDAALATYSEMVRNGCSPNLCTYNALIKMHGVRGKFTEMMIVFDD 421

Query: 494 SIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAFLNLIEDNSTG-- 549
               G  PD      LL+V        +V  V   +++A   P+   +++LI   S    
Sbjct: 422 LRSAGYVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGL 481

Query: 550 FENIKEEFRNVIK 562
           F+   E ++ +I+
Sbjct: 482 FDQAMEIYKRMIE 494



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 83/171 (48%), Gaps = 14/171 (8%)

Query: 201 RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTY 260
           +  + +E++   M  N I     TY++++    R    ++       +  +G+ PD  +Y
Sbjct: 620 KMVKKVEEVLTLMKENSINHSAATYNSLMHMYSRLGDCEKCEAILTEIKSSGMRPDRYSY 679

Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGK------MFGESGDYDGIRYV 314
           + ++  Y + G+++E   L+     SG KPD + +++  K      MF E+ D   +RY+
Sbjct: 680 NTVIYAYGRKGQMKEASRLFSEMKCSGVKPDIVTYNIFIKSYVANLMFEEAIDL--VRYL 737

Query: 315 LQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM--VESGLTPDEK 363
           + +    G +PN   YN++LE   + G+   A+S    +  +  G++ +EK
Sbjct: 738 VAQ----GCKPNERTYNSILEGYCRHGRMVEAKSFLSNLPKIYPGISKEEK 784



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/173 (20%), Positives = 80/173 (46%), Gaps = 14/173 (8%)

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
           E+   E+      LD    + +++   +  +  +  E    M +  +     TY++++ +
Sbjct: 591 EKAFQELRRRRCSLDINVLNAMVSIYGKNKMVKKVEEVLTLMKENSINHSAATYNSLMHM 650

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
           Y++ G  E+  ++     +SG +PD  +++ +   +G  G       +  EMK  GV+P+
Sbjct: 651 YSRLGDCEKCEAILTEIKSSGMRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGVKPD 710

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDE-------MVESGLTPDEKTLTALIKIY 372
           +V YN  +++        +A  +F+E       +V  G  P+E+T  ++++ Y
Sbjct: 711 IVTYNIFIKSY-------VANLMFEEAIDLVRYLVAQGCKPNERTYNSILEGY 756



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 68/144 (47%), Gaps = 2/144 (1%)

Query: 359 TPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV-EEAE 417
            PD    TAL+  + +A   +DA+ ++ RM +       + YN +L++ + + +  +E  
Sbjct: 182 APDASAYTALVSEFSRAGRFRDAVAVFRRMVDGGVQPALVTYNVVLHVYSKMSVPWKEVV 241

Query: 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
            L + MK  D  + D Y+Y  +++     G    A ++F+EM   G   + +    L+  
Sbjct: 242 VLVDSMK-EDGIELDRYTYNTLISCCRRRGLYREAAQMFDEMKAAGFEPDKVTFNSLLDV 300

Query: 478 LGKARRIDDLVRVFGVSIDRGVKP 501
            GKARR ++ + V     + G  P
Sbjct: 301 YGKARRHEEAIGVLKKMENAGCTP 324



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 68/135 (50%), Gaps = 6/135 (4%)

Query: 148 IPHQPTRENALLILNS-LKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLI 206
           I H     N+L+ + S L   +K       IKS  + P +   YN  + +  +GR+ Q+ 
Sbjct: 637 INHSAATYNSLMHMYSRLGDCEKCEAILTEIKSSGMRP-DRYSYNTVIYA--YGRKGQMK 693

Query: 207 E--QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAIL 264
           E  +L +EM  + ++ D +TY+  I       +F+EAI+    +   G  P+E TY++IL
Sbjct: 694 EASRLFSEMKCSGVKPDIVTYNIFIKSYVANLMFEEAIDLVRYLVAQGCKPNERTYNSIL 753

Query: 265 DVYAKSGKVEEVLSL 279
           + Y + G++ E  S 
Sbjct: 754 EGYCRHGRMVEAKSF 768


>gi|222617300|gb|EEE53432.1| hypothetical protein OsJ_36514 [Oryza sativa Japonica Group]
          Length = 607

 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 132/547 (24%), Positives = 247/547 (45%), Gaps = 27/547 (4%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           +F  +    L P    F ++     R G   +    + +EM+   I  D  TY+T I   
Sbjct: 39  YFRQMLKDGLCPDRKTFNSLLAACSRVG-HLEDARAVFDEMIHLGIGRDIYTYNTFIDAI 97

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +C   + A++    M   G+ P+ VTYS ++D Y+K  K EE L L E+  +   + D 
Sbjct: 98  CKCGNMELAMQVLLDMEAKGVKPNVVTYSTLIDGYSKLEKYEEALKLCEKMKSMRIQLDR 157

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           + ++ L  ++ ++G Y  I  V  EM+ LG++ + V YN+L+   GK G+  +   L  +
Sbjct: 158 VCYNTLLAIYVKAGKYAEIANVCDEMEELGIEKDTVTYNSLINGYGKQGRLDIVSILVQD 217

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M + G+ P   T + LI IY KA    DA  ++   +E+    D +L+++ ++  A  GL
Sbjct: 218 MRKRGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKPDVVLFSSFIDTLAKNGL 277

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
           +E A  L  DM      KP+  +Y A+++ +G    +   +E   E+ ++G+ + V G  
Sbjct: 278 IEWALSLLNDMTEMG-IKPNVVTYNAIIDAFGKSKVM---MEDDSEVGDMGI-VGVYGGQ 332

Query: 473 CL-----IQCLGKA------RRIDDL---VRVFGVSIDRGVKPDDRLCGCLLSVVSLCET 518
            +     +   G++      RR  +L   + +F   + +GV+P+      +L+  S C +
Sbjct: 333 IVRVANPVSRGGRSATDVRMRRSQELFFILELFQKMVQQGVRPNVVTFSAILNACSRCNS 392

Query: 519 SEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLID 578
            ED   ++  L+  +  +      +   S    +  +   N +   +      F N L D
Sbjct: 393 FEDAALLLEQLRLFDNFVYGVAYGLLVGSREVWSQAQSLFNQLGRMDSPTSSAFYNALTD 452

Query: 579 ICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAK 638
           +  +     +A ++++     G+   +   T  E+ LD+  +S GAAQ  +  W+  +  
Sbjct: 453 VLWHFGQRRKAQQVVF----EGINRRVWENTWGEFCLDLHLMSCGAAQAMVHAWLLNVRS 508

Query: 639 IVLREEVLPQLFLAETGTGTHKFSQGLAT---AFASHVNKLAAPFRQSEGKAGCFVATRE 695
           IV     +P+     TG G H    G +T      + +N + APF+      G FV+   
Sbjct: 509 IVFEGRAMPEFLSILTGWGKHSRIAGASTLRRVIEALLNSIGAPFQVERFNIGRFVSPSA 568

Query: 696 DLVSWVQ 702
            + +W++
Sbjct: 569 VVAAWLR 575



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/259 (30%), Positives = 126/259 (48%), Gaps = 2/259 (0%)

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSG-KVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
            E M   GL P  V+Y+A++D   K G  +   L  + + +  G  PD   F+ L     
Sbjct: 4   LESMKGAGLRPTTVSYNAVIDACGKGGVDLRFTLGYFRQMLKDGLCPDRKTFNSLLAACS 63

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
             G  +  R V  EM  LG+  ++  YNT ++A+ K G   LA  +  +M   G+ P+  
Sbjct: 64  RVGHLEDARAVFDEMIHLGIGRDIYTYNTFIDAICKCGNMELAMQVLLDMEAKGVKPNVV 123

Query: 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
           T + LI  Y K    ++AL+L E+M+  +  +D + YNTLL +    G   E   + ++M
Sbjct: 124 TYSTLIDGYSKLEKYEEALKLCEKMKSMRIQLDRVCYNTLLAIYVKAGKYAEIANVCDEM 183

Query: 424 KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483
           +     K D  +Y +++N YG  G +D    L ++M + GVA +V+  + LI    KA  
Sbjct: 184 EELGIEK-DTVTYNSLINGYGKQGRLDIVSILVQDMRKRGVAPSVLTYSTLIDIYSKAGM 242

Query: 484 IDDLVRVFGVSIDRGVKPD 502
             D   V+    + G+KPD
Sbjct: 243 HGDAFNVYLDFKESGLKPD 261


>gi|225445998|ref|XP_002267263.1| PREDICTED: pentatricopeptide repeat-containing protein At2g18940
           [Vitis vinifera]
 gi|297735424|emb|CBI17864.3| unnamed protein product [Vitis vinifera]
          Length = 821

 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 130/487 (26%), Positives = 230/487 (47%), Gaps = 33/487 (6%)

Query: 142 LRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSL-RFG 200
           +RA T I H  +R         +  ++++   F  ++   L P   + YNV +    + G
Sbjct: 209 VRAWTTILHAYSR---------IGKYERAITMFEKMRKTGLSPT-LVTYNVMLDVYGKMG 258

Query: 201 RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTY 260
           R +  I  L +EM SN +E D  T ST+I+   R  L DEA ++F R+   G +    TY
Sbjct: 259 RSWNKILGLLDEMRSNGLEFDEFTCSTVISACGREGLLDEARKFFARLKSEGYVAGTFTY 318

Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
           +++L V+ K+G   E LS+ +    +   PD + ++ L   +  +G ++     +  M  
Sbjct: 319 NSLLQVFGKAGIYSEALSILKEMEKNNCPPDLVTYNELVAAYVRAGFHEEGADFIDTMIR 378

Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380
            G+ PN + Y T++ A GKAGK   A S F +M ESG  P+  T  A++ + GK    ++
Sbjct: 379 KGIMPNAITYTTVINAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEE 438

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
            +++   MR N    + + +NT+L MC + G+ +   R+F +MK   + +P+  ++ A++
Sbjct: 439 MIDMLCDMRSNGCAPNSVTWNTMLAMCGNKGMHKYVNRVFREMKSCGF-EPNRDTFNALI 497

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID---R 497
             YG  G+  + ++++EEM + G    V     L+  L  ARR  D      V +D   +
Sbjct: 498 GAYGRCGSQIDVVKMYEEMIKAGFTPCVTTYNALLNAL--ARR-GDWEAAESVILDMKSK 554

Query: 498 GVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAFLNLIEDNS-----TGF 550
           G KP++     +L+  +       + K+   +   +  P  +    L+  N       G 
Sbjct: 555 GFKPNETSYSLMLNCYAKGGNGRGIEKIEEEIYNGHIFPSWILLRTLVLANFKRRALMGM 614

Query: 551 ENIKEEF-RNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGL--HN 607
           E   +EF ++  K   V       N ++ I     + +RAHE+L L    GL P L  +N
Sbjct: 615 ERAFQEFCKHGYKPDLV-----LFNSMLSIFAKNKMYDRAHEMLRLIRESGLQPDLVTYN 669

Query: 608 KTLDEWS 614
             +D ++
Sbjct: 670 SLMDMYA 676



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/359 (19%), Positives = 154/359 (42%), Gaps = 71/359 (19%)

Query: 213 MVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK 272
           M+   I  + ITY+T+I    +    D+A+ +F +M ++G +P+  TY+AIL +  K  +
Sbjct: 376 MIRKGIMPNAITYTTVINAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSR 435

Query: 273 VEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNT 332
           +EE++ +     ++G  P+ + ++ +  M G  G +  +  V +EMKS G +PN   +N 
Sbjct: 436 LEEMIDMLCDMRSNGCAPNSVTWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNA 495

Query: 333 LLEAMGKAGKPGLARSLFDEMVESGLT--------------------------------- 359
           L+ A G+ G       +++EM+++G T                                 
Sbjct: 496 LIGAYGRCGSQIDVVKMYEEMIKAGFTPCVTTYNALLNALARRGDWEAAESVILDMKSKG 555

Query: 360 --PDEKTLTALIKIYGK-------------------------------ARWAKDALELWE 386
             P+E + + ++  Y K                               A + + AL   E
Sbjct: 556 FKPNETSYSLMLNCYAKGGNGRGIEKIEEEIYNGHIFPSWILLRTLVLANFKRRALMGME 615

Query: 387 RMRE----NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNI 442
           R  +    + +  D +L+N++L++ A   + + A  +   ++ S   +PD  +Y +++++
Sbjct: 616 RAFQEFCKHGYKPDLVLFNSMLSIFAKNKMYDRAHEMLRLIRESG-LQPDLVTYNSLMDM 674

Query: 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
           Y  GG      E+ + + + G   +++    +I+   +   + + +R        G++P
Sbjct: 675 YARGGECWKGEEILKGIQKSGGKPDLVSYNTVIKGFCRQGLMQEAIRTLSEMTISGIRP 733



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/324 (22%), Positives = 137/324 (42%), Gaps = 37/324 (11%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           F  +KS    P    F  +     R G Q  ++ ++  EM+         TY+ ++    
Sbjct: 478 FREMKSCGFEPNRDTFNALIGAYGRCGSQIDVV-KMYEEMIKAGFTPCVTTYNALLNALA 536

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG------KVEE------------ 275
           R   ++ A      M   G  P+E +YS +L+ YAK G      K+EE            
Sbjct: 537 RRGDWEAAESVILDMKSKGFKPNETSYSLMLNCYAKGGNGRGIEKIEEEIYNGHIFPSWI 596

Query: 276 -----VLSLYERGV------------ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEM 318
                VL+ ++R                G+KPD + F+ +  +F ++  YD    +L+ +
Sbjct: 597 LLRTLVLANFKRRALMGMERAFQEFCKHGYKPDLVLFNSMLSIFAKNKMYDRAHEMLRLI 656

Query: 319 KSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWA 378
           +  G+QP+LV YN+L++   + G+      +   + +SG  PD  +   +IK + +    
Sbjct: 657 RESGLQPDLVTYNSLMDMYARGGECWKGEEILKGIQKSGGKPDLVSYNTVIKGFCRQGLM 716

Query: 379 KDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTA 438
           ++A+     M  +      + YNT +   +  G+  E E +   M   D C+P+  +Y  
Sbjct: 717 QEAIRTLSEMTISGIRPCIVTYNTFVAGYSGKGMFSEVEEVISYMIQHD-CRPNELTYKI 775

Query: 439 MLNIYGSGGNVDNAIELFEEMSEL 462
           +++ Y  G     A++    ++E+
Sbjct: 776 VVDGYCKGKKYKEAMDFVSNITEM 799



 Score = 44.7 bits (104), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 30/183 (16%), Positives = 78/183 (42%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + +N  +      + +    ++   +  + ++ D +TY++++    R     +  E  
Sbjct: 629 DLVLFNSMLSIFAKNKMYDRAHEMLRLIRESGLQPDLVTYNSLMDMYARGGECWKGEEIL 688

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           + + K+G  PD V+Y+ ++  + + G ++E +        SG +P  + ++     +   
Sbjct: 689 KGIQKSGGKPDLVSYNTVIKGFCRQGLMQEAIRTLSEMTISGIRPCIVTYNTFVAGYSGK 748

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G +  +  V+  M     +PN + Y  +++   K  K   A      + E   + D+++L
Sbjct: 749 GMFSEVEEVISYMIQHDCRPNELTYKIVVDGYCKGKKYKEAMDFVSNITEMDKSFDDQSL 808

Query: 366 TAL 368
             L
Sbjct: 809 RRL 811


>gi|224126121|ref|XP_002329666.1| predicted protein [Populus trichocarpa]
 gi|222870547|gb|EEF07678.1| predicted protein [Populus trichocarpa]
          Length = 821

 Score =  158 bits (400), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 125/482 (25%), Positives = 233/482 (48%), Gaps = 23/482 (4%)

Query: 142 LRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSL-RFG 200
           +RA T I H  +R            ++++   F  +    L P   + YNV +    + G
Sbjct: 209 VRAYTTILHSYSRCGK---------YERAVAIFEKMNESGLSPT-LVTYNVMLDVYGKMG 258

Query: 201 RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTY 260
           R +  I  L +EM S  +  D  T ST+I+   R  L DEA E+F  +   G  P  VTY
Sbjct: 259 RSWNKILGLLDEMRSKGLGFDEFTCSTVISACGREGLLDEAKEFFVGLKSQGYAPGTVTY 318

Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
           +A+L V+ K+G   E LS+ +    +   PD + ++ L   +  +G Y+    ++  M  
Sbjct: 319 NALLQVFGKAGIYSEALSIMKEMEDNNCPPDAVTYNELVAAYVRAGFYEEGAALIDTMTE 378

Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380
            G++PN V Y T++ A G+A +   A SL+D+M ESG  P+  T  A++ + GK   +++
Sbjct: 379 NGIKPNAVTYTTMINAYGRAAQVDKALSLYDQMKESGCAPNVCTYNAILGMLGKKSQSEE 438

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
            +++   M+ +    + I +NT+L+MC + G+ +  +R+F++MK   + +PD  ++  ++
Sbjct: 439 MMKILCDMKVDGCAPNRITWNTMLSMCGNKGMHKYVKRVFQEMKSCGF-EPDRDTFNTLI 497

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID--DLVRVFGVSIDRG 498
              G  G+  +A ++++EM E G   +V     L+  L  ARR D      V     ++G
Sbjct: 498 TASGRCGSDIDAEKIYDEMLEAGFTPSVATYNALLNAL--ARRGDWRTAESVIKDMKNKG 555

Query: 499 VKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAFLNLIEDN--STGFENIK 554
            KP +     +L+  +     + + ++   +   +  P  +    LI  N        ++
Sbjct: 556 FKPSETSYSLILNSYAKGGYVKGINRIEKDIYDGHIFPSWMLLRTLILANFKCRALAGME 615

Query: 555 EEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGL--HNKTLDE 612
             F+ + K         F N ++ +   +N+++RAHE+++L    GL P L  +N  +D 
Sbjct: 616 RAFQALQKHGYKPDLVVF-NSMLSMFSRKNMHDRAHEIMHLIQECGLQPDLVTYNSLMDL 674

Query: 613 WS 614
           ++
Sbjct: 675 YA 676



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 108/388 (27%), Positives = 183/388 (47%), Gaps = 8/388 (2%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLA--NEMVSNEIELDNITYSTIIT 230
           FF  +KSQ   P  T+ YN  ++   FG+     E L+   EM  N    D +TY+ ++ 
Sbjct: 302 FFVGLKSQGYAP-GTVTYNALLQV--FGKAGIYSEALSIMKEMEDNNCPPDAVTYNELVA 358

Query: 231 CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
              R   ++E     + M + G+ P+ VTY+ +++ Y ++ +V++ LSLY++   SG  P
Sbjct: 359 AYVRAGFYEEGAALIDTMTENGIKPNAVTYTTMINAYGRAAQVDKALSLYDQMKESGCAP 418

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
           +   ++ +  M G+    + +  +L +MK  G  PN + +NT+L   G  G     + +F
Sbjct: 419 NVCTYNAILGMLGKKSQSEEMMKILCDMKVDGCAPNRITWNTMLSMCGNKGMHKYVKRVF 478

Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
            EM   G  PD  T   LI   G+     DA ++++ M E  +      YN LLN  A  
Sbjct: 479 QEMKSCGFEPDRDTFNTLITASGRCGSDIDAEKIYDEMLEAGFTPSVATYNALLNALARR 538

Query: 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG 470
           G    AE + +DMK   + KP   SY+ +LN Y  GG V     + +++ +  +  + M 
Sbjct: 539 GDWRTAESVIKDMKNKGF-KPSETSYSLILNSYAKGGYVKGINRIEKDIYDGHIFPSWML 597

Query: 471 CTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQ 530
              LI    K R +  + R F      G KPD  +   +LS+ S     +   +++  +Q
Sbjct: 598 LRTLILANFKCRALAGMERAFQALQKHGYKPDLVVFNSMLSMFSRKNMHDRAHEIMHLIQ 657

Query: 531 QAN--PKLVAFLNLIEDNSTGFENIKEE 556
           +    P LV + +L++  + G E  K E
Sbjct: 658 ECGLQPDLVTYNSLMDLYARGGECWKAE 685



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/349 (25%), Positives = 162/349 (46%), Gaps = 37/349 (10%)

Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS 261
           Q  +  +L + +  ++  LD   Y+TI+    RC  ++ A+  FE+M ++GL P  VTY+
Sbjct: 189 QHSIASKLFDVIPLDDYSLDVRAYTTILHSYSRCGKYERAVAIFEKMNESGLSPTLVTYN 248

Query: 262 AILDVYAKSGKV-EEVLSLYE----RGV-------------------------------A 285
            +LDVY K G+   ++L L +    +G+                               +
Sbjct: 249 VMLDVYGKMGRSWNKILGLLDEMRSKGLGFDEFTCSTVISACGREGLLDEAKEFFVGLKS 308

Query: 286 SGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGL 345
            G+ P  + ++ L ++FG++G Y     +++EM+     P+ V YN L+ A  +AG    
Sbjct: 309 QGYAPGTVTYNALLQVFGKAGIYSEALSIMKEMEDNNCPPDAVTYNELVAAYVRAGFYEE 368

Query: 346 ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405
             +L D M E+G+ P+  T T +I  YG+A     AL L+++M+E+    +   YN +L 
Sbjct: 369 GAALIDTMTENGIKPNAVTYTTMINAYGRAAQVDKALSLYDQMKESGCAPNVCTYNAILG 428

Query: 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
           M       EE  ++  DMK+ D C P+  ++  ML++ G+ G       +F+EM   G  
Sbjct: 429 MLGKKSQSEEMMKILCDMKV-DGCAPNRITWNTMLSMCGNKGMHKYVKRVFQEMKSCGFE 487

Query: 466 INVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVS 514
            +      LI   G+     D  +++   ++ G  P       LL+ ++
Sbjct: 488 PDRDTFNTLITASGRCGSDIDAEKIYDEMLEAGFTPSVATYNALLNALA 536



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 86/390 (22%), Positives = 167/390 (42%), Gaps = 75/390 (19%)

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           P + + YN  + +      ++    L + M  N I+ + +TY+T+I    R    D+A+ 
Sbjct: 347 PPDAVTYNELVAAYVRAGFYEEGAALIDTMTENGIKPNAVTYTTMINAYGRAAQVDKALS 406

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
            +++M ++G  P+  TY+AIL +  K  + EE++ +       G  P+ I ++ +  M G
Sbjct: 407 LYDQMKESGCAPNVCTYNAILGMLGKKSQSEEMMKILCDMKVDGCAPNRITWNTMLSMCG 466

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT---- 359
             G +  ++ V QEMKS G +P+   +NTL+ A G+ G    A  ++DEM+E+G T    
Sbjct: 467 NKGMHKYVKRVFQEMKSCGFEPDRDTFNTLITASGRCGSDIDAEKIYDEMLEAGFTPSVA 526

Query: 360 -------------------------------PDEKTLTALIKIYGKARWAKD-------- 380
                                          P E + + ++  Y K  + K         
Sbjct: 527 TYNALLNALARRGDWRTAESVIKDMKNKGFKPSETSYSLILNSYAKGGYVKGINRIEKDI 586

Query: 381 -----------------------ALELWER----MRENKWPMDFILYNTLLNMCADIGLV 413
                                  AL   ER    ++++ +  D +++N++L+M +   + 
Sbjct: 587 YDGHIFPSWMLLRTLILANFKCRALAGMERAFQALQKHGYKPDLVVFNSMLSMFSRKNM- 645

Query: 414 EEAERLFEDMKLSDYC--KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC 471
              +R  E M L   C  +PD  +Y +++++Y  GG    A E+  E+   G   +++  
Sbjct: 646 --HDRAHEIMHLIQECGLQPDLVTYNSLMDLYARGGECWKAEEILRELQNSGDKSDLISY 703

Query: 472 TCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
             +I+   +   + + +R     I RG++P
Sbjct: 704 NTVIKGFCRQGLMHEALRTLSEMISRGIRP 733



 Score = 82.4 bits (202), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 71/324 (21%), Positives = 128/324 (39%), Gaps = 37/324 (11%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           F  +KS    P    F  +   S R G      E++ +EM+         TY+ ++    
Sbjct: 478 FQEMKSCGFEPDRDTFNTLITASGRCGSDID-AEKIYDEMLEAGFTPSVATYNALLNALA 536

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV----------------- 276
           R   +  A    + M   G  P E +YS IL+ YAK G V+ +                 
Sbjct: 537 RRGDWRTAESVIKDMKNKGFKPSETSYSLILNSYAKGGYVKGINRIEKDIYDGHIFPSWM 596

Query: 277 --------------LSLYERGVAS----GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEM 318
                         L+  ER   +    G+KPD + F+ +  MF     +D    ++  +
Sbjct: 597 LLRTLILANFKCRALAGMERAFQALQKHGYKPDLVVFNSMLSMFSRKNMHDRAHEIMHLI 656

Query: 319 KSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWA 378
           +  G+QP+LV YN+L++   + G+   A  +  E+  SG   D  +   +IK + +    
Sbjct: 657 QECGLQPDLVTYNSLMDLYARGGECWKAEEILRELQNSGDKSDLISYNTVIKGFCRQGLM 716

Query: 379 KDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTA 438
            +AL     M         + YNT +   A  G+  E + +   M   D C+P+  +Y  
Sbjct: 717 HEALRTLSEMISRGIRPCIVTYNTFVGGYAAKGMFAEIDEVLSYMTKHD-CRPNELTYKI 775

Query: 439 MLNIYGSGGNVDNAIELFEEMSEL 462
           +++ Y        A++    ++++
Sbjct: 776 VVDGYCKAKKFKEAMDFVSTITDI 799



 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 121/256 (47%), Gaps = 14/256 (5%)

Query: 137 TEEAFLRAITEIPHQPTRENALLILNSLKFWQKSYF-FFNWIKSQ----NLFPMETIFYN 191
           T E+ ++ +     +P+  +  LILNS  + +  Y    N I+      ++FP   +   
Sbjct: 543 TAESVIKDMKNKGFKPSETSYSLILNS--YAKGGYVKGINRIEKDIYDGHIFPSWMLLRT 600

Query: 192 VTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKT 251
           + + + +  R    +E+    +  +  + D + ++++++   R N+ D A E    + + 
Sbjct: 601 LILANFKC-RALAGMERAFQALQKHGYKPDLVVFNSMLSMFSRKNMHDRAHEIMHLIQEC 659

Query: 252 GLMPDEVTYSAILDVYAKSG---KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY 308
           GL PD VTY++++D+YA+ G   K EE+L   +    SG K D I+++ + K F   G  
Sbjct: 660 GLQPDLVTYNSLMDLYARGGECWKAEEILRELQN---SGDKSDLISYNTVIKGFCRQGLM 716

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
                 L EM S G++P +V YNT +      G       +   M +    P+E T   +
Sbjct: 717 HEALRTLSEMISRGIRPCIVTYNTFVGGYAAKGMFAEIDEVLSYMTKHDCRPNELTYKIV 776

Query: 369 IKIYGKARWAKDALEL 384
           +  Y KA+  K+A++ 
Sbjct: 777 VDGYCKAKKFKEAMDF 792



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 81/185 (43%), Gaps = 6/185 (3%)

Query: 333 LLEAMGKAGKPGLARSLFDEMV----ESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
           +L+A+  +G    A  LF+ +V       +  D + +  + +I G+      A +L++ +
Sbjct: 141 VLKALDLSGDCERAILLFEWLVLNLGTGNVNLDNQAVELMARILGRESQHSIASKLFDVI 200

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
             + + +D   Y T+L+  +  G  E A  +FE M  S    P   +Y  ML++YG  G 
Sbjct: 201 PLDDYSLDVRAYTTILHSYSRCGKYERAVAIFEKMNESG-LSPTLVTYNVMLDVYGKMGR 259

Query: 449 VDNAI-ELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCG 507
             N I  L +EM   G+  +   C+ +I   G+   +D+    F     +G  P      
Sbjct: 260 SWNKILGLLDEMRSKGLGFDEFTCSTVISACGREGLLDEAKEFFVGLKSQGYAPGTVTYN 319

Query: 508 CLLSV 512
            LL V
Sbjct: 320 ALLQV 324



 Score = 50.4 bits (119), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 51/295 (17%), Positives = 116/295 (39%), Gaps = 50/295 (16%)

Query: 337 MGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMD 396
           +G+  +  +A  LFD +     + D +  T ++  Y +    + A+ ++E+M E+     
Sbjct: 184 LGRESQHSIASKLFDVIPLDDYSLDVRAYTTILHSYSRCGKYERAVAIFEKMNESGLSPT 243

Query: 397 FILYNTLLNM------------------------------------CADIGLVEEAERLF 420
            + YN +L++                                    C   GL++EA+  F
Sbjct: 244 LVTYNVMLDVYGKMGRSWNKILGLLDEMRSKGLGFDEFTCSTVISACGREGLLDEAKEFF 303

Query: 421 EDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK 480
             +K   Y  P   +Y A+L ++G  G    A+ + +EM +     + +    L+    +
Sbjct: 304 VGLKSQGYA-PGTVTYNALLQVFGKAGIYSEALSIMKEMEDNNCPPDAVTYNELVAAYVR 362

Query: 481 ARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN-----PK 535
           A   ++   +     + G+KP+        ++++    +  V K ++   Q       P 
Sbjct: 363 AGFYEEGAALIDTMTENGIKPN---AVTYTTMINAYGRAAQVDKALSLYDQMKESGCAPN 419

Query: 536 LVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRP---FCNCLIDICRNRNLNE 587
           +  +  ++     G ++  EE   ++ D +VD   P     N ++ +C N+ +++
Sbjct: 420 VCTYNAIL--GMLGKKSQSEEMMKILCDMKVDGCAPNRITWNTMLSMCGNKGMHK 472


>gi|147825385|emb|CAN75494.1| hypothetical protein VITISV_030525 [Vitis vinifera]
          Length = 821

 Score =  158 bits (400), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 130/487 (26%), Positives = 230/487 (47%), Gaps = 33/487 (6%)

Query: 142 LRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSL-RFG 200
           +RA T I H  +R         +  ++++   F  ++   L P   + YNV +    + G
Sbjct: 209 VRAWTTILHAYSR---------IGKYERAITMFEKMRKTGLSPT-LVTYNVMLDVYGKMG 258

Query: 201 RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTY 260
           R +  I  L +EM SN +E D  T ST+I+   R  L DEA ++F R+   G +    TY
Sbjct: 259 RSWNKILGLLDEMRSNGLEFDEFTCSTVISACGREGLLDEARKFFARLKSEGYVAGTFTY 318

Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
           +++L V+ K+G   E LS+ +    +   PD + ++ L   +  +G ++     +  M  
Sbjct: 319 NSLLQVFGKAGIYSEALSILKEMEKNNCPPDLVTYNELVAAYVRAGFHEEGADFIDTMIR 378

Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380
            G+ PN + Y T++ A GKAGK   A S F +M ESG  P+  T  A++ + GK    ++
Sbjct: 379 KGIMPNAITYTTVINAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEE 438

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
            +++   MR N    + + +NT+L MC + G+ +   R+F +MK   + +P+  ++ A++
Sbjct: 439 MIDMLCDMRSNGCAPNSVTWNTMLAMCGNKGMHKYVNRVFREMKSCGF-EPNRDTFNALI 497

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID---R 497
             YG  G+  + ++++EEM + G    V     L+  L  ARR  D      V +D   +
Sbjct: 498 GAYGRCGSQIDVVKMYEEMIKAGFTPCVTTYNALLNAL--ARR-GDWEAAESVILDMKSK 554

Query: 498 GVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAFLNLIEDNS-----TGF 550
           G KP++     +L+  +       + K+   +   +  P  +    L+  N       G 
Sbjct: 555 GFKPNETSYSLMLNCYAKGGNGRGIEKIEEEIYNGHIFPSWILLRTLVLANFKRRALMGM 614

Query: 551 ENIKEEF-RNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGL--HN 607
           E   +EF ++  K   V       N ++ I     + +RAHE+L L    GL P L  +N
Sbjct: 615 ERAFQEFCKHGYKPDLV-----LFNSMLSIFAKNKMYDRAHEMLRLIRESGLQPDLVTYN 669

Query: 608 KTLDEWS 614
             +D ++
Sbjct: 670 SLMDMYA 676



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/359 (19%), Positives = 154/359 (42%), Gaps = 71/359 (19%)

Query: 213 MVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK 272
           M+   I  + ITY+T+I    +    D+A+ +F +M ++G +P+  TY+AIL +  K  +
Sbjct: 376 MIRKGIMPNAITYTTVINAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSR 435

Query: 273 VEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNT 332
           +EE++ +     ++G  P+ + ++ +  M G  G +  +  V +EMKS G +PN   +N 
Sbjct: 436 LEEMIDMLCDMRSNGCAPNSVTWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNA 495

Query: 333 LLEAMGKAGKPGLARSLFDEMVESGLT--------------------------------- 359
           L+ A G+ G       +++EM+++G T                                 
Sbjct: 496 LIGAYGRCGSQIDVVKMYEEMIKAGFTPCVTTYNALLNALARRGDWEAAESVILDMKSKG 555

Query: 360 --PDEKTLTALIKIYGK-------------------------------ARWAKDALELWE 386
             P+E + + ++  Y K                               A + + AL   E
Sbjct: 556 FKPNETSYSLMLNCYAKGGNGRGIEKIEEEIYNGHIFPSWILLRTLVLANFKRRALMGME 615

Query: 387 RMRE----NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNI 442
           R  +    + +  D +L+N++L++ A   + + A  +   ++ S   +PD  +Y +++++
Sbjct: 616 RAFQEFCKHGYKPDLVLFNSMLSIFAKNKMYDRAHEMLRLIRESG-LQPDLVTYNSLMDM 674

Query: 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
           Y  GG      E+ + + + G   +++    +I+   +   + + +R        G++P
Sbjct: 675 YARGGECWKGEEILKGIQKSGGKPDLVSYNTVIKGFCRQGLMQEAIRTLSEMTISGIRP 733



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/324 (22%), Positives = 137/324 (42%), Gaps = 37/324 (11%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           F  +KS    P    F  +     R G Q  ++ ++  EM+         TY+ ++    
Sbjct: 478 FREMKSCGFEPNRDTFNALIGAYGRCGSQIDVV-KMYEEMIKAGFTPCVTTYNALLNALA 536

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG------KVEE------------ 275
           R   ++ A      M   G  P+E +YS +L+ YAK G      K+EE            
Sbjct: 537 RRGDWEAAESVILDMKSKGFKPNETSYSLMLNCYAKGGNGRGIEKIEEEIYNGHIFPSWI 596

Query: 276 -----VLSLYERGV------------ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEM 318
                VL+ ++R                G+KPD + F+ +  +F ++  YD    +L+ +
Sbjct: 597 LLRTLVLANFKRRALMGMERAFQEFCKHGYKPDLVLFNSMLSIFAKNKMYDRAHEMLRLI 656

Query: 319 KSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWA 378
           +  G+QP+LV YN+L++   + G+      +   + +SG  PD  +   +IK + +    
Sbjct: 657 RESGLQPDLVTYNSLMDMYARGGECWKGEEILKGIQKSGGKPDLVSYNTVIKGFCRQGLM 716

Query: 379 KDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTA 438
           ++A+     M  +      + YNT +   +  G+  E E +   M   D C+P+  +Y  
Sbjct: 717 QEAIRTLSEMTISGIRPCIVTYNTFVAGYSGKGMFSEVEEVISYMIQHD-CRPNELTYKI 775

Query: 439 MLNIYGSGGNVDNAIELFEEMSEL 462
           +++ Y  G     A++    ++E+
Sbjct: 776 VVDGYCKGKKYKEAMDFVSNITEM 799



 Score = 44.7 bits (104), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 30/183 (16%), Positives = 78/183 (42%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + +N  +      + +    ++   +  + ++ D +TY++++    R     +  E  
Sbjct: 629 DLVLFNSMLSIFAKNKMYDRAHEMLRLIRESGLQPDLVTYNSLMDMYARGGECWKGEEIL 688

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           + + K+G  PD V+Y+ ++  + + G ++E +        SG +P  + ++     +   
Sbjct: 689 KGIQKSGGKPDLVSYNTVIKGFCRQGLMQEAIRTLSEMTISGIRPCIVTYNTFVAGYSGK 748

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G +  +  V+  M     +PN + Y  +++   K  K   A      + E   + D+++L
Sbjct: 749 GMFSEVEEVISYMIQHDCRPNELTYKIVVDGYCKGKKYKEAMDFVSNITEMDKSFDDQSL 808

Query: 366 TAL 368
             L
Sbjct: 809 RRL 811


>gi|449459510|ref|XP_004147489.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
           chloroplastic-like [Cucumis sativus]
 gi|449530101|ref|XP_004172035.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
           chloroplastic-like [Cucumis sativus]
          Length = 680

 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 175/344 (50%), Gaps = 1/344 (0%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           WQ+S    +WI  + L+      YNV ++++   +Q++L   L +EM    +  D  TYS
Sbjct: 139 WQRSLAILDWINEEALYTPSVYAYNVVLRNVLRAKQWELAHGLFDEMRQRALAADRYTYS 198

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T+IT   +  +FD A+ W ++M +  +  D V YS ++++  K     + +S++ R   S
Sbjct: 199 TLITYFGKEGMFDAALSWLQKMEQDRVSGDLVLYSNLIELSRKLCDYSKAISIFSRLKRS 258

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G  PD +A++ +  +FG++  +   R++L+EM+++ V P+ V Y+TLL    +  K   A
Sbjct: 259 GITPDIVAYNTMINVFGKAKLFREARFLLKEMRAVDVMPDTVSYSTLLNMFVENEKFLEA 318

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            S+  EM E     D  T   +I +YG+    K+A  L+ RMR+     + + YNT+L +
Sbjct: 319 LSVISEMKEVNCPLDLTTCNIMIDVYGQLDMVKEADRLFWRMRKIGIEPNVVSYNTILRV 378

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
             +  L  EA  LF  M+  +  K +  +Y  M+ IYG     + A  L ++M + G+  
Sbjct: 379 YGEAELFGEAIHLFRLMQRKE-IKQNVVTYNTMIKIYGKTLEHEKATNLVQDMQKRGIEP 437

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
           N +  + +I   GKA ++D    +F      G + D  L   ++
Sbjct: 438 NAITYSTIISIWGKAGKLDRSAMLFQKLRSSGAEIDQVLYQTMI 481



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 79/345 (22%), Positives = 169/345 (48%), Gaps = 6/345 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K   + P + + YN  +      + F+    L  EM + ++  D ++YS
Sbjct: 245 YSKAISIFSRLKRSGITP-DIVAYNTMINVFGKAKLFREARFLLKEMRAVDVMPDTVSYS 303

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++        F EA+     M +     D  T + ++DVY +   V+E   L+ R    
Sbjct: 304 TLLNMFVENEKFLEALSVISEMKEVNCPLDLTTCNIMIDVYGQLDMVKEADRLFWRMRKI 363

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ + +++GE+  +    ++ + M+   ++ N+V YNT+++  GK  +   A
Sbjct: 364 GIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKEIKQNVVTYNTMIKIYGKTLEHEKA 423

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  +M + G+ P+  T + +I I+GKA     +  L++++R +   +D +LY T++  
Sbjct: 424 TNLVQDMQKRGIEPNAITYSTIISIWGKAGKLDRSAMLFQKLRSSGAEIDQVLYQTMIVA 483

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K     +PDN   T  + I    G ++ A  +F +  + G   
Sbjct: 484 YEKAGLVGHAKRLLHELK-----QPDNIPRTTAITILAKAGRIEEATWVFRQAFDAGELK 538

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
           ++    C+I    + ++  +++ VF    + G  P+  +   +L+
Sbjct: 539 DISVFECMIDLFSRNKKHKNVLEVFEKMRNVGHFPNSDVIALVLN 583



 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 82/338 (24%), Positives = 150/338 (44%), Gaps = 39/338 (11%)

Query: 160 ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIE 219
           +    K ++++ F    +++ ++ P +T+ Y+  +       +F     + +EM      
Sbjct: 273 VFGKAKLFREARFLLKEMRAVDVMP-DTVSYSTLLNMFVENEKFLEALSVISEMKEVNCP 331

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
           LD  T + +I    + ++  EA   F RM K G+ P+ V+Y+ IL VY ++    E + L
Sbjct: 332 LDLTTCNIMIDVYGQLDMVKEADRLFWRMRKIGIEPNVVSYNTILRVYGEAELFGEAIHL 391

Query: 280 YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
           +        K + + ++ + K++G++ +++    ++Q+M+  G++PN + Y+T++   GK
Sbjct: 392 FRLMQRKEIKQNVVTYNTMIKIYGKTLEHEKATNLVQDMQKRGIEPNAITYSTIISIWGK 451

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
           AGK   +  LF ++  SG   D+     +I  Y KA     A  L   + E K P D I 
Sbjct: 452 AGKLDRSAMLFQKLRSSGAEIDQVLYQTMIVAYEKAGLVGHAKRL---LHELKQP-DNIP 507

Query: 400 YNTLLNMCADIGLVEEA----ERLFEDMKLSDY----CKPDNYSYTA------------- 438
             T + + A  G +EEA     + F+  +L D     C  D +S                
Sbjct: 508 RTTAITILAKAGRIEEATWVFRQAFDAGELKDISVFECMIDLFSRNKKHKNVLEVFEKMR 567

Query: 439 -------------MLNIYGSGGNVDNAIELFEEMSELG 463
                        +LN YG   + D A  L+ EM E G
Sbjct: 568 NVGHFPNSDVIALVLNAYGKLRDFDTADALYMEMQEEG 605



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 84/180 (46%), Gaps = 4/180 (2%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  ++ S+  E+D + Y T+I   ++  L   A    +R+      PD +  +  + + A
Sbjct: 461 LFQKLRSSGAEIDQVLYQTMIVAYEKAGLVGHA----KRLLHELKQPDNIPRTTAITILA 516

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           K+G++EE   ++ +   +G   D   F  +  +F  +  +  +  V ++M+++G  PN  
Sbjct: 517 KAGRIEEATWVFRQAFDAGELKDISVFECMIDLFSRNKKHKNVLEVFEKMRNVGHFPNSD 576

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
           V   +L A GK      A +L+ EM E G    ++    ++ +YG     K    L+ER+
Sbjct: 577 VIALVLNAYGKLRDFDTADALYMEMQEEGCVFTDEVHFQMLSLYGARNDYKRLESLFERL 636



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 79/169 (46%), Gaps = 2/169 (1%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           DNI  +T IT   +    +EA   F + +  G + D   +  ++D+++++ K + VL ++
Sbjct: 504 DNIPRTTAITILAKAGRIEEATWVFRQAFDAGELKDISVFECMIDLFSRNKKHKNVLEVF 563

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
           E+    G  P+    +++   +G+  D+D    +  EM+  G      V+  +L   G  
Sbjct: 564 EKMRNVGHFPNSDVIALVLNAYGKLRDFDTADALYMEMQEEGCVFTDEVHFQMLSLYGAR 623

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALI-KIYGKARWAKDALELWERM 388
                  SLF E ++S    ++K L  ++  IY +   +KDA  +  RM
Sbjct: 624 NDYKRLESLF-ERLDSDPNINKKELHLVVASIYERGNRSKDASRIINRM 671


>gi|225437600|ref|XP_002271180.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic [Vitis vinifera]
          Length = 867

 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 132/554 (23%), Positives = 254/554 (45%), Gaps = 46/554 (8%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + I +N  +     G  ++    L +EM+   IE D  TY+T++    +    D A +  
Sbjct: 290 DRITFNSLLAVCGRGGLWEAARNLFSEMLYRGIEQDIFTYNTLLDAVCKGGQMDLAFQIM 349

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
             M +  +MP+ VTYS ++D YAK+G+++E L+L+     +    D ++++ L  ++ + 
Sbjct: 350 SEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFASIGLDRVSYNTLLSIYAKL 409

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G ++    V +EM+S G++ + V YN LL   GK GK    + +F+EM    + P+  T 
Sbjct: 410 GRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMKAERIFPNLLTY 469

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
           + LI +Y K    ++A+E++   ++     D +LY+ L++     GLVE A    ++M  
Sbjct: 470 STLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDALCKNGLVESAVSFLDEMT- 528

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVD----------------NAIELFEEMSELGVA---- 465
            +  +P+  +Y ++++ +G  G+ +                +++++ E+ +E  V     
Sbjct: 529 KEGIRPNVVTYNSIIDAFGRSGSAECVIDPPYETNVSKMSSSSLKVVEDATESEVGDKED 588

Query: 466 ---INVMGC-----TCLIQCLGKARR-IDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLC 516
              I + G      TC  +   + R+ I  ++ VF    +  +KP+      +L+  S C
Sbjct: 589 NQIIKIFGQLAAEKTCHAKKENRGRQEILCILAVFHKMHELDIKPNVVTFSAILNACSRC 648

Query: 517 ETSEDVGKVITCLQQANPKL--VAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCN 574
            + ED   ++  L+  + ++  VA   L+      +   +  F  V K  +      F N
Sbjct: 649 NSFEDASMLLEELRLFDNQVYGVAHGLLMGYGDNVWVQAQSLFDEV-KQMDSSTASAFYN 707

Query: 575 CLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWS---LDVRSLSVGAAQTALEE 631
            L D+  +      A  ++  G    ++  +       WS   LD+  +S GAA+  +  
Sbjct: 708 ALTDMLWHFGQRRGAQLVVLEGKRRHVWENM-------WSNSCLDLHLMSSGAARAMVHA 760

Query: 632 WMWTLAKIVLREEVLPQLFLAETGTGTHKFSQG---LATAFASHVNKLAAPFRQSEGKAG 688
           W+  +  IV     LPQL    TG G H    G   L  A  + +  + APFR ++   G
Sbjct: 761 WLLNIRSIVFEGHELPQLLSILTGWGKHSKVVGDGALRRAIEALLTGMGAPFRVAKCNLG 820

Query: 689 CFVATREDLVSWVQ 702
            F++T   + +W++
Sbjct: 821 RFISTGAVVAAWLR 834



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 96/314 (30%), Positives = 156/314 (49%), Gaps = 8/314 (2%)

Query: 205 LIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAIL 264
           + E   NE   N +      +S +I+   R    DEAI+ FE M  +GL P+ VTY+A++
Sbjct: 207 VFETALNEGYGNTV----YAFSALISAYGRSGYCDEAIKVFETMKSSGLKPNLVTYNAVI 262

Query: 265 DVYAKSG-KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGV 323
           D   K G        +++  + +G +PD I F+ L  + G  G ++  R +  EM   G+
Sbjct: 263 DACGKGGVDFNRAAEIFDEMLRNGVQPDRITFNSLLAVCGRGGLWEAARNLFSEMLYRGI 322

Query: 324 QPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALE 383
           + ++  YNTLL+A+ K G+  LA  +  EM    + P+  T + +I  Y KA    +AL 
Sbjct: 323 EQDIFTYNTLLDAVCKGGQMDLAFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALN 382

Query: 384 LWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIY 443
           L+  M+     +D + YNTLL++ A +G  EEA  + ++M+ S   K D  +Y A+L  Y
Sbjct: 383 LFNEMKFASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEME-SSGIKKDAVTYNALLGGY 441

Query: 444 GSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
           G  G  +    +FEEM    +  N++  + LI    K     + + VF      G+K D 
Sbjct: 442 GKQGKYEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADV 501

Query: 504 RLCGCLLSVVSLCE 517
            L   L+   +LC+
Sbjct: 502 VLYSALID--ALCK 513



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 106/391 (27%), Positives = 180/391 (46%), Gaps = 16/391 (4%)

Query: 232 AKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291
           AK    F+ A+   +R  + G +      SA++ +  + G+VE   +++E  +  G+   
Sbjct: 165 AKAIRCFEFAVRREQRRNEQGKLA-----SAMISILGRLGQVELAKNVFETALNEGYGNT 219

Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP-GLARSLF 350
             AFS L   +G SG  D    V + MKS G++PNLV YN +++A GK G     A  +F
Sbjct: 220 VYAFSALISAYGRSGYCDEAIKVFETMKSSGLKPNLVTYNAVIDACGKGGVDFNRAAEIF 279

Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
           DEM+ +G+ PD  T  +L+ + G+    + A  L+  M       D   YNTLL+     
Sbjct: 280 DEMLRNGVQPDRITFNSLLAVCGRGGLWEAARNLFSEMLYRGIEQDIFTYNTLLDAVCKG 339

Query: 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG 470
           G ++ A ++  +M    +  P+  +Y+ +++ Y   G +D A+ LF EM    + ++ + 
Sbjct: 340 GQMDLAFQIMSEMP-RKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFASIGLDRVS 398

Query: 471 CTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQ 530
              L+    K  R ++ + V       G+K D      LL         E+V +V   ++
Sbjct: 399 YNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMK 458

Query: 531 QAN--PKLVAFLNLIEDNSTG--FENIKEEFRNVIKDTEVDARRPFCNCLID-ICRNRNL 585
                P L+ +  LI+  S G  ++   E FR   K   + A     + LID +C+N  L
Sbjct: 459 AERIFPNLLTYSTLIDVYSKGGLYQEAMEVFRE-FKKAGLKADVVLYSALIDALCKN-GL 516

Query: 586 NERAHELLYLGTLYGLYPGL--HNKTLDEWS 614
            E A   L   T  G+ P +  +N  +D + 
Sbjct: 517 VESAVSFLDEMTKEGIRPNVVTYNSIIDAFG 547



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 79/325 (24%), Positives = 149/325 (45%), Gaps = 45/325 (13%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMK-SLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITC 231
            FN +K  ++  ++ + YN  +    + GR F+    +  EM S+ I+ D +TY+ ++  
Sbjct: 383 LFNEMKFASI-GLDRVSYNTLLSIYAKLGR-FEEALNVCKEMESSGIKKDAVTYNALLGG 440

Query: 232 AKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291
             +   ++E    FE M    + P+ +TYS ++DVY+K G  +E + ++     +G K D
Sbjct: 441 YGKQGKYEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKAD 500

Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
            + +S L     ++G  +     L EM   G++PN+V YN++++A G++G    A  + D
Sbjct: 501 VVLYSALIDALCKNGLVESAVSFLDEMTKEGIRPNVVTYNSIIDAFGRSGS---AECVID 557

Query: 352 EMVESGLTP-----------------DEKTLTALIKIYGKARWAKDA------------- 381
              E+ ++                   +K    +IKI+G+    K               
Sbjct: 558 PPYETNVSKMSSSSLKVVEDATESEVGDKEDNQIIKIFGQLAAEKTCHAKKENRGRQEIL 617

Query: 382 --LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY-TA 438
             L ++ +M E     + + ++ +LN C+     E+A  L E+++L      DN  Y  A
Sbjct: 618 CILAVFHKMHELDIKPNVVTFSAILNACSRCNSFEDASMLLEELRLF-----DNQVYGVA 672

Query: 439 MLNIYGSGGNV-DNAIELFEEMSEL 462
              + G G NV   A  LF+E+ ++
Sbjct: 673 HGLLMGYGDNVWVQAQSLFDEVKQM 697


>gi|225452658|ref|XP_002276556.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
           chloroplastic [Vitis vinifera]
 gi|296087770|emb|CBI35026.3| unnamed protein product [Vitis vinifera]
          Length = 675

 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 119/423 (28%), Positives = 199/423 (47%), Gaps = 13/423 (3%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           WQ+S    +WI  +  +      YNV ++++   +Q++L   L  EM    +  D  TYS
Sbjct: 135 WQRSLALLDWINEEASYSPSVFAYNVVIRNVLRAKQWELAHGLFEEMRQRALAPDRYTYS 194

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T+IT   +  +FD A+ W ++M +  +  D V YS ++++  K     + +S++ R   S
Sbjct: 195 TLITHFGKEGMFDSALSWLQKMEQDRVSGDLVLYSNLIELSRKLCDYSKAISIFSRLKRS 254

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G  PD +A++ +  +FG++  +   R +L EM++ GV P+ V Y+TLL    + GK   A
Sbjct: 255 GISPDLVAYNSMINVFGKAKLFREARLLLPEMRAGGVMPDTVSYSTLLSMYVENGKYVEA 314

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            S+F EM E     D  T   +I +YG+   AK+A  L+  MR+       + YNTLL +
Sbjct: 315 LSVFSEMNEVRCPLDLTTCNVMIDVYGQLDMAKEADRLFWSMRKMGIEPGIVSYNTLLRV 374

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
             +  L  EA  LF  M+  D  + +  +Y  M+ IYG     + A  L +EM   G+  
Sbjct: 375 YGEAELFGEAIHLFRLMQRKD-IEQNVVTYNTMIKIYGKSLEHEKATNLVQEMQNRGIEP 433

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           N +  + +I    KA ++D    +F      G++ D  L   ++             +++
Sbjct: 434 NAITYSTIISIWDKAGKLDRAAMLFQKLRSSGIEIDQVLYQTMIVAYERAGLVAHAKRLL 493

Query: 527 TCLQQAN--PKLVAFLNLIEDNSTGFENIKEE---FRNVIKDTEVDARRPFCNCLIDI-C 580
             L++ +  P+  A   L      G   I+E    FR      EV     F  C+ID+  
Sbjct: 494 HELKRPDNIPRETAITIL-----AGAGRIEEATWVFRQAFDAGEVKDITVF-GCMIDLFS 547

Query: 581 RNR 583
           RNR
Sbjct: 548 RNR 550



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 164/345 (47%), Gaps = 6/345 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K   + P + + YN  +      + F+    L  EM +  +  D ++YS
Sbjct: 241 YSKAISIFSRLKRSGISP-DLVAYNSMINVFGKAKLFREARLLLPEMRAGGVMPDTVSYS 299

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T+++       + EA+  F  M +     D  T + ++DVY +    +E   L+      
Sbjct: 300 TLLSMYVENGKYVEALSVFSEMNEVRCPLDLTTCNVMIDVYGQLDMAKEADRLFWSMRKM 359

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P  ++++ L +++GE+  +    ++ + M+   ++ N+V YNT+++  GK+ +   A
Sbjct: 360 GIEPGIVSYNTLLRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKSLEHEKA 419

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+ KA     A  L++++R +   +D +LY T++  
Sbjct: 420 TNLVQEMQNRGIEPNAITYSTIISIWDKAGKLDRAAMLFQKLRSSGIEIDQVLYQTMIVA 479

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K     +PDN      + I    G ++ A  +F +  + G   
Sbjct: 480 YERAGLVAHAKRLLHELK-----RPDNIPRETAITILAGAGRIEEATWVFRQAFDAGEVK 534

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
           ++    C+I    + R+  +++ VF      G  PD  +   +L+
Sbjct: 535 DITVFGCMIDLFSRNRKHTNVIEVFDKMRGAGYFPDSNVIALVLN 579



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/314 (21%), Positives = 145/314 (46%), Gaps = 34/314 (10%)

Query: 218 IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL 277
           IE   ++Y+T++       LF EAI  F  M +  +  + VTY+ ++ +Y KS + E+  
Sbjct: 361 IEPGIVSYNTLLRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKSLEHEKAT 420

Query: 278 SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
           +L +     G +P+ I +S +  ++ ++G  D    + Q+++S G++ + V+Y T++ A 
Sbjct: 421 NLVQEMQNRGIEPNAITYSTIISIWDKAGKLDRAAMLFQKLRSSGIEIDQVLYQTMIVAY 480

Query: 338 GKAGKPGLARSLFDEMVESGLTPDEKTLTAL----------------------------- 368
            +AG    A+ L  E+      P E  +T L                             
Sbjct: 481 ERAGLVAHAKRLLHELKRPDNIPRETAITILAGAGRIEEATWVFRQAFDAGEVKDITVFG 540

Query: 369 --IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
             I ++ + R   + +E++++MR   +  D  +   +LN C  +   E+A+ ++++M+  
Sbjct: 541 CMIDLFSRNRKHTNVIEVFDKMRGAGYFPDSNVIALVLNACGKLREFEKADAIYKEME-E 599

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL-GKARRID 485
           + C   +  +  ML++YG+ G+      LFE +      IN      ++  +  +A R++
Sbjct: 600 EGCVFSDEVHFQMLSLYGARGDFQMVDSLFERLDS-DPNINKKELHLVVASIYERANRLN 658

Query: 486 DLVRVFGVSIDRGV 499
           D  ++     +RG+
Sbjct: 659 DASQIMNRMRERGI 672



 Score = 42.7 bits (99), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 46/213 (21%), Positives = 92/213 (43%), Gaps = 12/213 (5%)

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           YN ++         E A  LFE+M+      PD Y+Y+ ++  +G  G  D+A+   ++M
Sbjct: 158 YNVVIRNVLRAKQWELAHGLFEEMR-QRALAPDRYTYSTLITHFGKEGMFDSALSWLQKM 216

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETS 519
            +  V+ +++  + LI+   K       + +F      G+ PD      +++V    +  
Sbjct: 217 EQDRVSGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGISPDLVAYNSMINVFGKAKLF 276

Query: 520 EDVGKVITCLQQAN--PKLVAFLNLIEDNSTGFENIKE-EFRNVIKDTEVDARRPF---- 572
            +   ++  ++     P  V++  L+   S   EN K  E  +V  +   + R P     
Sbjct: 277 REARLLLPEMRAGGVMPDTVSYSTLL---SMYVENGKYVEALSVFSEMN-EVRCPLDLTT 332

Query: 573 CNCLIDICRNRNLNERAHELLYLGTLYGLYPGL 605
           CN +ID+    ++ + A  L +     G+ PG+
Sbjct: 333 CNVMIDVYGQLDMAKEADRLFWSMRKMGIEPGI 365


>gi|168055632|ref|XP_001779828.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668740|gb|EDQ55341.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 730

 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 101/380 (26%), Positives = 177/380 (46%), Gaps = 4/380 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           W K+   FNW++    F  + +   V ++ L    Q   + +L   +      LD   Y+
Sbjct: 62  WNKALEVFNWMRQSVNFRPDGVTIAVMLRILGRESQLTTVSRLFKSLREEGYPLDVYAYT 121

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKV-EEVLSLYERGVA 285
           ++I+   R   F EA+ +FE+M + G  P  VTY+ I+D+Y K G+  E +L L+E   A
Sbjct: 122 SLISALSRNRKFKEALGFFEQMKEAGPQPSLVTYNVIIDLYGKKGRSWENILELFEEMKA 181

Query: 286 SGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGL 345
            G +PD   ++            +    +  +MKS    P+ V YN LL+  GKAG    
Sbjct: 182 QGIQPDEYTYNTAITACASGSLCEEATELFTQMKSSNCTPDRVTYNALLDVYGKAGWYNE 241

Query: 346 ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405
           A ++  EM  +G  P+  T   L+  +G+A     A E+ + M       D   Y +LL+
Sbjct: 242 AANVLKEMESAGCLPNIVTYNELLSAFGRAGLCNAAAEMKDSMVSKGIEPDVFTYTSLLS 301

Query: 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
             +  G VE+A  ++  M+ S+ C P+++++ A++ ++G   N    + +FE+M   GV 
Sbjct: 302 AYSRAGKVEQAMEIYNQMRTSN-CTPNSFTFNALIGMHGKNKNFSEMMVIFEDMQACGVE 360

Query: 466 INVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKV 525
            +++    L+   GK     ++++VF      G +PD      L+     C +S+    +
Sbjct: 361 PDIVTWNSLLGAFGKNGMYSEVLKVFRGMKKAGFEPDKATFNILIEAYGRCGSSDQALSI 420

Query: 526 ITCLQQAN--PKLVAFLNLI 543
              + QA   P L  F  L+
Sbjct: 421 YDGMLQAGCTPDLATFNTLL 440



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 171/338 (50%), Gaps = 3/338 (0%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITY 225
           ++++  FF  +K     P   + YNV +    + GR ++ I +L  EM +  I+ D  TY
Sbjct: 133 FKEALGFFEQMKEAGPQP-SLVTYNVIIDLYGKKGRSWENILELFEEMKAQGIQPDEYTY 191

Query: 226 STIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVA 285
           +T IT     +L +EA E F +M  +   PD VTY+A+LDVY K+G   E  ++ +   +
Sbjct: 192 NTAITACASGSLCEEATELFTQMKSSNCTPDRVTYNALLDVYGKAGWYNEAANVLKEMES 251

Query: 286 SGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGL 345
           +G  P+ + ++ L   FG +G  +    +   M S G++P++  Y +LL A  +AGK   
Sbjct: 252 AGCLPNIVTYNELLSAFGRAGLCNAAAEMKDSMVSKGIEPDVFTYTSLLSAYSRAGKVEQ 311

Query: 346 ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405
           A  ++++M  S  TP+  T  ALI ++GK +   + + ++E M+      D + +N+LL 
Sbjct: 312 AMEIYNQMRTSNCTPNSFTFNALIGMHGKNKNFSEMMVIFEDMQACGVEPDIVTWNSLLG 371

Query: 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
                G+  E  ++F  MK + + +PD  ++  ++  YG  G+ D A+ +++ M + G  
Sbjct: 372 AFGKNGMYSEVLKVFRGMKKAGF-EPDKATFNILIEAYGRCGSSDQALSIYDGMLQAGCT 430

Query: 466 INVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
            ++     L+  L +  R +    +         KP+D
Sbjct: 431 PDLATFNTLLAALAREGRWEHAELILDELNRSSYKPND 468



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 114/472 (24%), Positives = 206/472 (43%), Gaps = 51/472 (10%)

Query: 50  VAAESPNPETK-TLSLSEQLKPLSSTTLSPTKNDRTPLLSKPKSTWVNPTKPRRSVLSLQ 108
           ++A S N + K  L   EQ+K         T N    L  K   +W N  +     +  Q
Sbjct: 124 ISALSRNRKFKEALGFFEQMKEAGPQPSLVTYNVIIDLYGKKGRSWENILELFEE-MKAQ 182

Query: 109 RQKRSTYSYNPRVRDLKLFARKLNDCDNTEEAF--LRAITEIPHQPTRENALLILNSLKF 166
             +   Y+YN  +      +     C+   E F  +++    P + T    L +     +
Sbjct: 183 GIQPDEYTYNTAITACASGSL----CEEATELFTQMKSSNCTPDRVTYNALLDVYGKAGW 238

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQ--FQLIEQLANEMVSNEIELDNIT 224
           + ++      ++S    P   + YN  + +  FGR        ++ + MVS  IE D  T
Sbjct: 239 YNEAANVLKEMESAGCLP-NIVTYNELLSA--FGRAGLCNAAAEMKDSMVSKGIEPDVFT 295

Query: 225 YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
           Y+++++   R    ++A+E + +M  +   P+  T++A++ ++ K+    E++ ++E   
Sbjct: 296 YTSLLSAYSRAGKVEQAMEIYNQMRTSNCTPNSFTFNALIGMHGKNKNFSEMMVIFEDMQ 355

Query: 285 ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344
           A G +PD + ++ L   FG++G Y  +  V + MK  G +P+   +N L+EA G+ G   
Sbjct: 356 ACGVEPDIVTWNSLLGAFGKNGMYSEVLKVFRGMKKAGFEPDKATFNILIEAYGRCGSSD 415

Query: 345 LARSLFDEMVESGLTPDEKTLTALIKIYGK-ARWAKDALELWERMRENKWPMDFILYNTL 403
            A S++D M+++G TPD  T   L+    +  RW    L L E  R +  P D I Y ++
Sbjct: 416 QALSIYDGMLQAGCTPDLATFNTLLAALAREGRWEHAELILDELNRSSYKPND-IAYASM 474

Query: 404 LNMCADIG-----------------------------------LVEEAERLFEDMKLSDY 428
           L+  A+ G                                   LV+EAE  F  M+   Y
Sbjct: 475 LHAYANGGELEKLKEMVDTLHTIYVPFTKILLKTFVLVYSKCSLVDEAEDAFLAMRHHGY 534

Query: 429 CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK 480
              D  ++ AM+++YG  G +D A + F  +   G+  +V+   CL+   G+
Sbjct: 535 LS-DTSTFNAMISMYGKKGMMDKATDTFALLRSTGLEPDVVTYNCLMGMYGR 585



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 126/261 (48%), Gaps = 1/261 (0%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           W+ +    + +   +  P + I Y   + +   G + + ++++ + + +  +    I   
Sbjct: 449 WEHAELILDELNRSSYKPND-IAYASMLHAYANGGELEKLKEMVDTLHTIYVPFTKILLK 507

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T +    +C+L DEA + F  M   G + D  T++A++ +Y K G +++    +    ++
Sbjct: 508 TFVLVYSKCSLVDEAEDAFLAMRHHGYLSDTSTFNAMISMYGKKGMMDKATDTFALLRST 567

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +PD + ++ L  M+G  G Y      L+E  + G  P+LV YNT++ +  K G+   A
Sbjct: 568 GLEPDVVTYNCLMGMYGREGMYRKCEATLRECMAAGQTPDLVSYNTVIFSYSKHGQLSSA 627

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
             +F EMV +G+ PD  T    +  Y       +AL + + M +     D + Y TL++ 
Sbjct: 628 TRIFHEMVSNGIQPDSFTYNTFVGCYVNGGMFPEALSVVKHMHKTGCKPDEVTYRTLVDA 687

Query: 407 CADIGLVEEAERLFEDMKLSD 427
              IG  EE ER+ + +K SD
Sbjct: 688 YCKIGKFEEVERILKFIKSSD 708



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 79/398 (19%), Positives = 158/398 (39%), Gaps = 37/398 (9%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           +N +++ N  P  +  +N  +      + F  +  +  +M +  +E D +T+++++    
Sbjct: 316 YNQMRTSNCTP-NSFTFNALIGMHGKNKNFSEMMVIFEDMQACGVEPDIVTWNSLLGAFG 374

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
           +  ++ E ++ F  M K G  PD+ T++ +++ Y + G  ++ LS+Y+  + +G  PD  
Sbjct: 375 KNGMYSEVLKVFRGMKKAGFEPDKATFNILIEAYGRCGSSDQALSIYDGMLQAGCTPDLA 434

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR------ 347
            F+ L       G ++    +L E+     +PN + Y ++L A    G+    +      
Sbjct: 435 TFNTLLAALAREGRWEHAELILDELNRSSYKPNDIAYASMLHAYANGGELEKLKEMVDTL 494

Query: 348 ----------------------SLFDE-------MVESGLTPDEKTLTALIKIYGKARWA 378
                                 SL DE       M   G   D  T  A+I +YGK    
Sbjct: 495 HTIYVPFTKILLKTFVLVYSKCSLVDEAEDAFLAMRHHGYLSDTSTFNAMISMYGKKGMM 554

Query: 379 KDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTA 438
             A + +  +R      D + YN L+ M    G+  + E    +   +    PD  SY  
Sbjct: 555 DKATDTFALLRSTGLEPDVVTYNCLMGMYGREGMYRKCEATLRECMAAGQ-TPDLVSYNT 613

Query: 439 MLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRG 498
           ++  Y   G + +A  +F EM   G+  +       + C        + + V       G
Sbjct: 614 VIFSYSKHGQLSSATRIFHEMVSNGIQPDSFTYNTFVGCYVNGGMFPEALSVVKHMHKTG 673

Query: 499 VKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKL 536
            KPD+     L+         E+V +++  ++ ++P  
Sbjct: 674 CKPDEVTYRTLVDAYCKIGKFEEVERILKFIKSSDPNF 711


>gi|302753732|ref|XP_002960290.1| hypothetical protein SELMODRAFT_73828 [Selaginella moellendorffii]
 gi|300171229|gb|EFJ37829.1| hypothetical protein SELMODRAFT_73828 [Selaginella moellendorffii]
          Length = 546

 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 99/372 (26%), Positives = 184/372 (49%), Gaps = 3/372 (0%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           WQ+S    +W+  +  +      YNV +K++   RQ++L E L  EMV  ++  D  T+S
Sbjct: 5   WQRSLALHDWMIEKGGYAPSIFAYNVVLKNVLRARQWELAEGLVLEMVEKDLVPDKFTFS 64

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T+I+   R N  ++A+ W + M   G+ PD V +S ++++  K     +  SL+ +  AS
Sbjct: 65  TLISGYGRANRLEDAMGWLQEMEAGGIKPDLVIFSTLIELAGKVKDYSKATSLFSKLKAS 124

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G  PD + ++ +  ++G++  Y   + +L EMK  G+ P+ V Y  L+ A  ++ K   A
Sbjct: 125 GIAPDKVIYNSMINLYGKAKFYKEAQGLLAEMKEAGLMPDTVSYTILINAYAESQKYLEA 184

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL-WERMRENKWPMDFILYNTLLN 405
           + +F EM   G+  D  T   +I +YGK    +DA EL W   +      + + YNT++ 
Sbjct: 185 KQVFLEMKTKGIQLDVTTCNMMIDVYGKLEMVRDAEELFWSMSKTLGIQQNVVTYNTMIK 244

Query: 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
           +  +  L+ EA  +F  M+     +P+  +Y  +L ++G     + A+ L  +M + G+ 
Sbjct: 245 VYKEAELLSEAFNVFYYMQNKGGVEPNVITYNTILFLHGLTLQHEKAMRLVRKMQQRGIE 304

Query: 466 INVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKV 525
            N +  + LI   GK  + D    +F    ++G + D+ L   ++ V           ++
Sbjct: 305 PNAVTYSTLISIYGKTGKYDRAAFLFKTLREKGFEMDEILYQSMIVVYERAGLVAHAKRL 364

Query: 526 ITCLQQANPKLV 537
           +  L+Q  P +V
Sbjct: 365 LEELKQ--PDIV 374



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 90/376 (23%), Positives = 182/376 (48%), Gaps = 10/376 (2%)

Query: 127 FARKLNDCDNTEEAF--LRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFP 184
            A K+ D       F  L+A    P +    + + +    KF++++      +K   L P
Sbjct: 104 LAGKVKDYSKATSLFSKLKASGIAPDKVIYNSMINLYGKAKFYKEAQGLLAEMKEAGLMP 163

Query: 185 METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEW 244
            +T+ Y + + +    +++   +Q+  EM +  I+LD  T + +I    +  +  +A E 
Sbjct: 164 -DTVSYTILINAYAESQKYLEAKQVFLEMKTKGIQLDVTTCNMMIDVYGKLEMVRDAEEL 222

Query: 245 FERMYKT-GLMPDEVTYSAILDVYAKSGKVEEVLSL-YERGVASGWKPDPIAFSVLGKMF 302
           F  M KT G+  + VTY+ ++ VY ++  + E  ++ Y      G +P+ I ++ +  + 
Sbjct: 223 FWSMSKTLGIQQNVVTYNTMIKVYKEAELLSEAFNVFYYMQNKGGVEPNVITYNTILFLH 282

Query: 303 GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
           G +  ++    ++++M+  G++PN V Y+TL+   GK GK   A  LF  + E G   DE
Sbjct: 283 GLTLQHEKAMRLVRKMQQRGIEPNAVTYSTLISIYGKTGKYDRAAFLFKTLREKGFEMDE 342

Query: 363 KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED 422
               ++I +Y +A     A  L E +++   P D +  +T +++ A    +EEA +L+  
Sbjct: 343 ILYQSMIVVYERAGLVAHAKRLLEELKQ---P-DIVPRDTAISILAKAEKLEEAAKLYWR 398

Query: 423 MKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKAR 482
              +   K ++ +Y +M+ ++       NAI++FE M E G   +      L+   G+ R
Sbjct: 399 SHEAGEIK-ESVTYKSMIQLFVRNKRSKNAIDVFENMRESGFLPDSETTVVLLAAYGQLR 457

Query: 483 RIDDLVRVFGVSIDRG 498
           +++D  +++    +RG
Sbjct: 458 QLEDAEKLYLDMRERG 473



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 89/368 (24%), Positives = 165/368 (44%), Gaps = 12/368 (3%)

Query: 162 NSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELD 221
             +K + K+   F+ +K+  + P + + YN  +      + ++  + L  EM    +  D
Sbjct: 106 GKVKDYSKATSLFSKLKASGIAP-DKVIYNSMINLYGKAKFYKEAQGLLAEMKEAGLMPD 164

Query: 222 NITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY- 280
            ++Y+ +I        + EA + F  M   G+  D  T + ++DVY K   V +   L+ 
Sbjct: 165 TVSYTILINAYAESQKYLEAKQVFLEMKTKGIQLDVTTCNMMIDVYGKLEMVRDAEELFW 224

Query: 281 ERGVASGWKPDPIAFSVLGKMFGES---GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
                 G + + + ++ + K++ E+    +   + Y +Q     GV+PN++ YNT+L   
Sbjct: 225 SMSKTLGIQQNVVTYNTMIKVYKEAELLSEAFNVFYYMQNKG--GVEPNVITYNTILFLH 282

Query: 338 GKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDF 397
           G   +   A  L  +M + G+ P+  T + LI IYGK      A  L++ +RE  + MD 
Sbjct: 283 GLTLQHEKAMRLVRKMQQRGIEPNAVTYSTLISIYGKTGKYDRAAFLFKTLREKGFEMDE 342

Query: 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE 457
           ILY +++ +    GLV  A+RL E++K     +PD       ++I      ++ A +L+ 
Sbjct: 343 ILYQSMIVVYERAGLVAHAKRLLEELK-----QPDIVPRDTAISILAKAEKLEEAAKLYW 397

Query: 458 EMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCE 517
              E G     +    +IQ   + +R  + + VF    + G  PD      LL+      
Sbjct: 398 RSHEAGEIKESVTYKSMIQLFVRNKRSKNAIDVFENMRESGFLPDSETTVVLLAAYGQLR 457

Query: 518 TSEDVGKV 525
             ED  K+
Sbjct: 458 QLEDAEKL 465



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 67/287 (23%), Positives = 143/287 (49%), Gaps = 6/287 (2%)

Query: 218 IELDNITYSTIITCAKRCNLFDEAIEWFERMY-KTGLMPDEVTYSAILDVYAKSGKVEEV 276
           I+ + +TY+T+I   K   L  EA   F  M  K G+ P+ +TY+ IL ++  + + E+ 
Sbjct: 232 IQQNVVTYNTMIKVYKEAELLSEAFNVFYYMQNKGGVEPNVITYNTILFLHGLTLQHEKA 291

Query: 277 LSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA 336
           + L  +    G +P+ + +S L  ++G++G YD   ++ + ++  G + + ++Y +++  
Sbjct: 292 MRLVRKMQQRGIEPNAVTYSTLISIYGKTGKYDRAAFLFKTLREKGFEMDEILYQSMIVV 351

Query: 337 MGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMD 396
             +AG    A+ L +E+ +  + P +      I I  KA   ++A +L+ R  E     +
Sbjct: 352 YERAGLVAHAKRLLEELKQPDIVPRDTA----ISILAKAEKLEEAAKLYWRSHEAGEIKE 407

Query: 397 FILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELF 456
            + Y +++ +       + A  +FE+M+ S +  PD+ +   +L  YG    +++A +L+
Sbjct: 408 SVTYKSMIQLFVRNKRSKNAIDVFENMRESGFL-PDSETTVVLLAAYGQLRQLEDAEKLY 466

Query: 457 EEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
            +M E G  +       +++  G AR+I +   +F      G+  D+
Sbjct: 467 LDMRERGCTLEKEVHFQMLKLYGDARKIREAEDMFAALKLEGLDGDE 513



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 124/277 (44%), Gaps = 41/277 (14%)

Query: 218 IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL 277
           +E + ITY+TI+         ++A+    +M + G+ P+ VTYS ++ +Y K+GK +   
Sbjct: 268 VEPNVITYNTILFLHGLTLQHEKAMRLVRKMQQRGIEPNAVTYSTLISIYGKTGKYDRAA 327

Query: 278 SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
            L++     G++ D I +  +  ++  +G     + +L+E+K    QP++V  +T +  +
Sbjct: 328 FLFKTLREKGFEMDEILYQSMIVVYERAGLVAHAKRLLEELK----QPDIVPRDTAISIL 383

Query: 338 GKAGKPGLARSL-----------------------------------FDEMVESGLTPDE 362
            KA K   A  L                                   F+ M ESG  PD 
Sbjct: 384 AKAEKLEEAAKLYWRSHEAGEIKESVTYKSMIQLFVRNKRSKNAIDVFENMRESGFLPDS 443

Query: 363 KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED 422
           +T   L+  YG+ R  +DA +L+  MRE    ++  ++  +L +  D   + EAE +F  
Sbjct: 444 ETTVVLLAAYGQLRQLEDAEKLYLDMRERGCTLEKEVHFQMLKLYGDARKIREAEDMFAA 503

Query: 423 MKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           +KL       +  Y  M+ IY     ++ A  LF EM
Sbjct: 504 LKLEGL--DGDELYLTMIRIYERASKLNEASRLFSEM 538



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 63/282 (22%), Positives = 121/282 (42%), Gaps = 32/282 (11%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           F +++++       I YN  +       Q +   +L  +M    IE + +TYST+I+   
Sbjct: 259 FYYMQNKGGVEPNVITYNTILFLHGLTLQHEKAMRLVRKMQQRGIEPNAVTYSTLISIYG 318

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG---------------------- 271
           +   +D A   F+ + + G   DE+ Y +++ VY ++G                      
Sbjct: 319 KTGKYDRAAFLFKTLREKGFEMDEILYQSMIVVYERAGLVAHAKRLLEELKQPDIVPRDT 378

Query: 272 ---------KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG 322
                    K+EE   LY R   +G   + + +  + ++F  +        V + M+  G
Sbjct: 379 AISILAKAEKLEEAAKLYWRSHEAGEIKESVTYKSMIQLFVRNKRSKNAIDVFENMRESG 438

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382
             P+      LL A G+  +   A  L+ +M E G T +++    ++K+YG AR  ++A 
Sbjct: 439 FLPDSETTVVLLAAYGQLRQLEDAEKLYLDMRERGCTLEKEVHFQMLKLYGDARKIREAE 498

Query: 383 ELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
           +++  ++      D  LY T++ +      + EA RLF +MK
Sbjct: 499 DMFAALKLEGLDGD-ELYLTMIRIYERASKLNEASRLFSEMK 539



 Score = 47.4 bits (111), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 42/200 (21%), Positives = 89/200 (44%), Gaps = 8/200 (4%)

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           YN +L         E AE L  +M   D   PD ++++ +++ YG    +++A+   +EM
Sbjct: 28  YNVVLKNVLRARQWELAEGLVLEMVEKDLV-PDKFTFSTLISGYGRANRLEDAMGWLQEM 86

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETS 519
              G+  +++  + LI+  GK +       +F      G+ PD  +   ++++    +  
Sbjct: 87  EAGGIKPDLVIFSTLIELAGKVKDYSKATSLFSKLKASGIAPDKVIYNSMINLYGKAKFY 146

Query: 520 EDVGKVITCLQQAN--PKLVAFLNLIE--DNSTGFENIKEEFRNV-IKDTEVDARRPFCN 574
           ++   ++  +++A   P  V++  LI     S  +   K+ F  +  K  ++D     CN
Sbjct: 147 KEAQGLLAEMKEAGLMPDTVSYTILINAYAESQKYLEAKQVFLEMKTKGIQLDV--TTCN 204

Query: 575 CLIDICRNRNLNERAHELLY 594
            +ID+     +   A EL +
Sbjct: 205 MMIDVYGKLEMVRDAEELFW 224


>gi|302768008|ref|XP_002967424.1| hypothetical protein SELMODRAFT_231012 [Selaginella moellendorffii]
 gi|300165415|gb|EFJ32023.1| hypothetical protein SELMODRAFT_231012 [Selaginella moellendorffii]
          Length = 546

 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 99/372 (26%), Positives = 184/372 (49%), Gaps = 3/372 (0%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           WQ+S    +W+  +  +      YNV +K++   RQ++L E L  EMV  ++  D  T+S
Sbjct: 5   WQRSLALHDWMIEKGGYAPSIFAYNVVLKNVLRARQWELAEGLVLEMVEKDLVPDKFTFS 64

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T+I+   R N  ++A+ W + M   G+ PD V +S ++++  K     +  SL+ +  AS
Sbjct: 65  TLISGYGRANRLEDAMGWLQEMEAGGIKPDLVIFSTLIELAGKVKDYSKATSLFSKLKAS 124

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G  PD + ++ +  ++G++  Y   + +L EMK  G+ P+ V Y  L+ A  ++ K   A
Sbjct: 125 GIAPDKVIYNSMINLYGKAKFYKEAQGLLAEMKEAGLMPDTVSYTILINAYAESQKYLEA 184

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL-WERMRENKWPMDFILYNTLLN 405
           + +F EM   G+  D  T   +I +YGK    +DA EL W   +      + + YNT++ 
Sbjct: 185 KQVFLEMKTKGIQLDVTTCNMMIDVYGKLEMVRDAEELFWSMSKTLGIQQNVVTYNTMIK 244

Query: 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
           +  +  L+ EA  +F  M+     +P+  +Y  +L ++G     + A+ L  +M + G+ 
Sbjct: 245 VYKEAELLSEAFNVFYYMQNKGGVEPNVITYNTILFLHGLTLQHEKAMRLVRKMQQRGIE 304

Query: 466 INVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKV 525
            N +  + LI   GK  + D    +F    ++G + D+ L   ++ V           ++
Sbjct: 305 PNAVTYSTLISIYGKTGKYDRAAFLFKTLREKGFEMDEILYQSMIVVYERAGLVAHAKRL 364

Query: 526 ITCLQQANPKLV 537
           +  L+Q  P +V
Sbjct: 365 LEELKQ--PDIV 374



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 90/376 (23%), Positives = 182/376 (48%), Gaps = 10/376 (2%)

Query: 127 FARKLNDCDNTEEAF--LRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFP 184
            A K+ D       F  L+A    P +    + + +    KF++++      +K   L P
Sbjct: 104 LAGKVKDYSKATSLFSKLKASGIAPDKVIYNSMINLYGKAKFYKEAQGLLAEMKEAGLMP 163

Query: 185 METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEW 244
            +T+ Y + + +    +++   +Q+  EM +  I+LD  T + +I    +  +  +A E 
Sbjct: 164 -DTVSYTILINAYAESQKYLEAKQVFLEMKTKGIQLDVTTCNMMIDVYGKLEMVRDAEEL 222

Query: 245 FERMYKT-GLMPDEVTYSAILDVYAKSGKVEEVLSL-YERGVASGWKPDPIAFSVLGKMF 302
           F  M KT G+  + VTY+ ++ VY ++  + E  ++ Y      G +P+ I ++ +  + 
Sbjct: 223 FWSMSKTLGIQQNVVTYNTMIKVYKEAELLSEAFNVFYYMQNKGGVEPNVITYNTILFLH 282

Query: 303 GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
           G +  ++    ++++M+  G++PN V Y+TL+   GK GK   A  LF  + E G   DE
Sbjct: 283 GLTLQHEKAMRLVRKMQQRGIEPNAVTYSTLISIYGKTGKYDRAAFLFKTLREKGFEMDE 342

Query: 363 KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED 422
               ++I +Y +A     A  L E +++   P D +  +T +++ A    +EEA +L+  
Sbjct: 343 ILYQSMIVVYERAGLVAHAKRLLEELKQ---P-DIVPRDTAISILAKAEKLEEAAKLYWR 398

Query: 423 MKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKAR 482
              +   K ++ +Y +M+ ++       NAI++FE M E G   +      L+   G+ R
Sbjct: 399 SHEAGEIK-ESVTYKSMIQLFMRNKRSKNAIDVFENMRESGFLPDSETTVVLLAAYGQLR 457

Query: 483 RIDDLVRVFGVSIDRG 498
           +++D  +++    +RG
Sbjct: 458 QLEDAEKLYLDMRERG 473



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 89/368 (24%), Positives = 165/368 (44%), Gaps = 12/368 (3%)

Query: 162 NSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELD 221
             +K + K+   F+ +K+  + P + + YN  +      + ++  + L  EM    +  D
Sbjct: 106 GKVKDYSKATSLFSKLKASGIAP-DKVIYNSMINLYGKAKFYKEAQGLLAEMKEAGLMPD 164

Query: 222 NITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY- 280
            ++Y+ +I        + EA + F  M   G+  D  T + ++DVY K   V +   L+ 
Sbjct: 165 TVSYTILINAYAESQKYLEAKQVFLEMKTKGIQLDVTTCNMMIDVYGKLEMVRDAEELFW 224

Query: 281 ERGVASGWKPDPIAFSVLGKMFGES---GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
                 G + + + ++ + K++ E+    +   + Y +Q     GV+PN++ YNT+L   
Sbjct: 225 SMSKTLGIQQNVVTYNTMIKVYKEAELLSEAFNVFYYMQNKG--GVEPNVITYNTILFLH 282

Query: 338 GKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDF 397
           G   +   A  L  +M + G+ P+  T + LI IYGK      A  L++ +RE  + MD 
Sbjct: 283 GLTLQHEKAMRLVRKMQQRGIEPNAVTYSTLISIYGKTGKYDRAAFLFKTLREKGFEMDE 342

Query: 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE 457
           ILY +++ +    GLV  A+RL E++K     +PD       ++I      ++ A +L+ 
Sbjct: 343 ILYQSMIVVYERAGLVAHAKRLLEELK-----QPDIVPRDTAISILAKAEKLEEAAKLYW 397

Query: 458 EMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCE 517
              E G     +    +IQ   + +R  + + VF    + G  PD      LL+      
Sbjct: 398 RSHEAGEIKESVTYKSMIQLFMRNKRSKNAIDVFENMRESGFLPDSETTVVLLAAYGQLR 457

Query: 518 TSEDVGKV 525
             ED  K+
Sbjct: 458 QLEDAEKL 465



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 124/277 (44%), Gaps = 41/277 (14%)

Query: 218 IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL 277
           +E + ITY+TI+         ++A+    +M + G+ P+ VTYS ++ +Y K+GK +   
Sbjct: 268 VEPNVITYNTILFLHGLTLQHEKAMRLVRKMQQRGIEPNAVTYSTLISIYGKTGKYDRAA 327

Query: 278 SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
            L++     G++ D I +  +  ++  +G     + +L+E+K    QP++V  +T +  +
Sbjct: 328 FLFKTLREKGFEMDEILYQSMIVVYERAGLVAHAKRLLEELK----QPDIVPRDTAISIL 383

Query: 338 GKAGKPGLARSL-----------------------------------FDEMVESGLTPDE 362
            KA K   A  L                                   F+ M ESG  PD 
Sbjct: 384 AKAEKLEEAAKLYWRSHEAGEIKESVTYKSMIQLFMRNKRSKNAIDVFENMRESGFLPDS 443

Query: 363 KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED 422
           +T   L+  YG+ R  +DA +L+  MRE    ++  ++  +L +  D   + EAE +F  
Sbjct: 444 ETTVVLLAAYGQLRQLEDAEKLYLDMRERGCTLEKEVHFQMLKLYGDARKIREAEDMFAA 503

Query: 423 MKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           +KL       +  Y  M+ IY     ++ A  LF EM
Sbjct: 504 LKLEGL--DGDELYLTMIRIYERASKLNEASRLFSEM 538



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 63/282 (22%), Positives = 121/282 (42%), Gaps = 32/282 (11%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           F +++++       I YN  +       Q +   +L  +M    IE + +TYST+I+   
Sbjct: 259 FYYMQNKGGVEPNVITYNTILFLHGLTLQHEKAMRLVRKMQQRGIEPNAVTYSTLISIYG 318

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG---------------------- 271
           +   +D A   F+ + + G   DE+ Y +++ VY ++G                      
Sbjct: 319 KTGKYDRAAFLFKTLREKGFEMDEILYQSMIVVYERAGLVAHAKRLLEELKQPDIVPRDT 378

Query: 272 ---------KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG 322
                    K+EE   LY R   +G   + + +  + ++F  +        V + M+  G
Sbjct: 379 AISILAKAEKLEEAAKLYWRSHEAGEIKESVTYKSMIQLFMRNKRSKNAIDVFENMRESG 438

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382
             P+      LL A G+  +   A  L+ +M E G T +++    ++K+YG AR  ++A 
Sbjct: 439 FLPDSETTVVLLAAYGQLRQLEDAEKLYLDMRERGCTLEKEVHFQMLKLYGDARKIREAE 498

Query: 383 ELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
           +++  ++      D  LY T++ +      + EA RLF +MK
Sbjct: 499 DMFAALKLEGLDGD-ELYLTMIRIYERASKLNEASRLFSEMK 539



 Score = 47.4 bits (111), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 42/200 (21%), Positives = 89/200 (44%), Gaps = 8/200 (4%)

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           YN +L         E AE L  +M   D   PD ++++ +++ YG    +++A+   +EM
Sbjct: 28  YNVVLKNVLRARQWELAEGLVLEMVEKDLV-PDKFTFSTLISGYGRANRLEDAMGWLQEM 86

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETS 519
              G+  +++  + LI+  GK +       +F      G+ PD  +   ++++    +  
Sbjct: 87  EAGGIKPDLVIFSTLIELAGKVKDYSKATSLFSKLKASGIAPDKVIYNSMINLYGKAKFY 146

Query: 520 EDVGKVITCLQQAN--PKLVAFLNLIE--DNSTGFENIKEEFRNV-IKDTEVDARRPFCN 574
           ++   ++  +++A   P  V++  LI     S  +   K+ F  +  K  ++D     CN
Sbjct: 147 KEAQGLLAEMKEAGLMPDTVSYTILINAYAESQKYLEAKQVFLEMKTKGIQLDV--TTCN 204

Query: 575 CLIDICRNRNLNERAHELLY 594
            +ID+     +   A EL +
Sbjct: 205 MMIDVYGKLEMVRDAEELFW 224


>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1043

 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 92/328 (28%), Positives = 166/328 (50%), Gaps = 2/328 (0%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           F  +K + + P+    Y   + SL    +     Q+ NE+  + +  D   Y+ ++    
Sbjct: 656 FGRMKEEGMEPLLG-NYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLV 714

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
           + N  DEA +  + M    ++PD  TY+++LD   KSG++EE  +++ +    G +PD +
Sbjct: 715 KSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVV 774

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
           A++ L  + G+ G       + + M      P++V Y++L++++GK G+   A   F+  
Sbjct: 775 AYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENS 834

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
           +  G TP+    ++LI  +GK      ALEL+E M+  + P + + YN LL+  A  G +
Sbjct: 835 ISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRL 894

Query: 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTC 473
             AE+L E+M+    C PD  +Y  +++  G  G VD A   F+ M E G+  +V+  T 
Sbjct: 895 NVAEKLLEEMEKVG-CVPDLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTS 953

Query: 474 LIQCLGKARRIDDLVRVFGVSIDRGVKP 501
           LI+ LGK  ++ +   +F    + G  P
Sbjct: 954 LIESLGKVDKLLEACELFDSMEEEGYNP 981



 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 109/391 (27%), Positives = 183/391 (46%), Gaps = 6/391 (1%)

Query: 130  KLNDCDNTEEAFLRAITEIPHQPTRENALLILNSLKFWQKSYF---FFNWIKSQNLFPME 186
            K +D D   + F R + E   +P   N   +L+SL   +K  F    FN ++  +L P +
Sbjct: 645  KSDDVDQALDVFGR-MKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVP-D 702

Query: 187  TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
            T  YN+ +  L    +     +L + M +  I  D  TY++++    +    +EA   F 
Sbjct: 703  TFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFT 762

Query: 247  RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
            +M + G  PD V Y++++DV  K GK+   L ++         PD + +S L    G+ G
Sbjct: 763  KMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEG 822

Query: 307  DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
              +   Y  +   S G  PN+ VY++L+++ GK G    A  LF+EM      P+  T  
Sbjct: 823  RVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYN 882

Query: 367  ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
             L+    KA     A +L E M +     D + YN L++    +G+V+EAE  F+ MK  
Sbjct: 883  NLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAESYFKRMKEK 942

Query: 427  DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
                PD  ++T+++   G    +  A ELF+ M E G   +V+    LI  LG+A ++ +
Sbjct: 943  GIV-PDVITFTSLIESLGKVDKLLEACELFDSMEEEGYNPSVVTYNVLIDILGRAGKVHE 1001

Query: 487  LVRVFGVSIDRGVKPDDRLCGCLLSVVSLCE 517
               +F     +G  PD    G +  ++S+ E
Sbjct: 1002 AAMIFHEMKVKGCMPDGITIGIMKRILSVRE 1032



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 82/277 (29%), Positives = 141/277 (50%), Gaps = 1/277 (0%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L +EMV      D  TYS +I C  + +  D+A++ F RM + G+ P    Y  +L    
Sbjct: 620 LFDEMVRKGCVADVSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLV 679

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           K  K++  L ++     S   PD   ++++     +S   D    ++  MK+  + P+L 
Sbjct: 680 KDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLF 739

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            Y +LL+ +GK+G+   A ++F +M E G  PD    T+L+ + GK      AL ++  M
Sbjct: 740 TYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAM 799

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
            + +   D + Y++L++     G VEEA   FE+  +S  C P+   Y+++++ +G  G 
Sbjct: 800 AKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFEN-SISKGCTPNVGVYSSLIDSFGKKGM 858

Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
           VD A+ELFEEM       N++    L+  L KA R++
Sbjct: 859 VDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLN 895



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/315 (28%), Positives = 150/315 (47%), Gaps = 1/315 (0%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           I YN  M +           +L   M  +E     +TY+T++    +    DEA+     
Sbjct: 529 ITYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLRE 588

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M K G  P  VTYS+++  + K  + EE LSL++  V  G   D   +S++     +S D
Sbjct: 589 MEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVADVSTYSLVINCLCKSDD 648

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
            D    V   MK  G++P L  Y TLL ++ K  K   A  +F+E+ ES L PD      
Sbjct: 649 VDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNI 708

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           ++    K+    +A +L + M+      D   Y +LL+     G +EEA  +F  M    
Sbjct: 709 MVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEG 768

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
           + +PD  +YT+++++ G GG + +A+ +F  M++     +V+  + LI  LGK  R+++ 
Sbjct: 769 H-EPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEA 827

Query: 488 VRVFGVSIDRGVKPD 502
              F  SI +G  P+
Sbjct: 828 YYFFENSISKGCTPN 842



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 102/402 (25%), Positives = 169/402 (42%), Gaps = 68/402 (16%)

Query: 166 FWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITY 225
           F+  +   F  +    + P    F        R GR     E +  EM+ + I+    T+
Sbjct: 267 FYHSAVIVFGKLGQFRIQPDAQTFRIFVHSFNRSGRLDPAAEPI-QEMIKSGIDPGVHTF 325

Query: 226 STIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVA 285
           + +I    +    DEA ++F  M      P+ VTY+ +++  AK+G++EE   ++     
Sbjct: 326 TVLIDALVKSGNIDEACKFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKE 385

Query: 286 SGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGL 345
           +   PD IA++ L    G++G+ D    + +EMK  G+ PNL  YN ++  +GKAG+   
Sbjct: 386 NNCSPDAIAYNTLIDGLGKAGEADMACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPE 445

Query: 346 ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN-------------- 391
           A  LF ++ E G  PD  T   LI + GK       L + + M E               
Sbjct: 446 AWQLFHDLKEQGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKEMVEKGGECIISRDSNAGH 505

Query: 392 -----------KWP------MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNY 434
                      ++P      +  I YNTL++     G V+EA +L E MK  + C P   
Sbjct: 506 EGTIEGADRTVEYPSLGFKSLGEITYNTLMSAFIHNGHVDEAVKLLEVMKKHE-CIPTVV 564

Query: 435 SYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVM------------------------- 469
           +YT +++  G  G +D A+ L  EM + G   +V+                         
Sbjct: 565 TYTTLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEM 624

Query: 470 ---GC-------TCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
              GC       + +I CL K+  +D  + VFG   + G++P
Sbjct: 625 VRKGCVADVSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEP 666



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 144/326 (44%), Gaps = 1/326 (0%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           FF W   Q+ +      Y + +K L   ++   + Q+   M      +     ++++   
Sbjct: 168 FFTWAGQQDGYSHTVGTYTLMIKRLAGAQETDAVVQILTAMWKEGHRISMHLLTSLLRTF 227

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
              N    A+E F +M   G  P    Y+ +L++  K G     + ++ +      +PD 
Sbjct: 228 GSTNNVSGALEIFNQMKSFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGKLGQFRIQPDA 287

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
             F +    F  SG  D     +QEM   G+ P +  +  L++A+ K+G    A   F+ 
Sbjct: 288 QTFRIFVHSFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEACKFFNG 347

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M     +P+  T T L+    KA   ++A E++  M+EN    D I YNTL++     G 
Sbjct: 348 MKNLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGE 407

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
            + A  LF++MK      P+  +Y  M+++ G  G    A +LF ++ E G   +V    
Sbjct: 408 ADMACGLFKEMKDRGLV-PNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYN 466

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRG 498
            LI  LGK  ++D ++ +    +++G
Sbjct: 467 TLIDVLGKGGQMDKVLAIIKEMVEKG 492



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 67/279 (24%), Positives = 127/279 (45%), Gaps = 1/279 (0%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           TY+ +I         D  ++    M+K G        +++L  +  +  V   L ++ + 
Sbjct: 184 TYTLMIKRLAGAQETDAVVQILTAMWKEGHRISMHLLTSLLRTFGSTNNVSGALEIFNQM 243

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
            + G  P    ++ + ++  + G Y     V  ++    +QP+   +   + +  ++G+ 
Sbjct: 244 KSFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGKLGQFRIQPDAQTFRIFVHSFNRSGRL 303

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
             A     EM++SG+ P   T T LI    K+    +A + +  M+  +   + + Y TL
Sbjct: 304 DPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEACKFFNGMKNLRCSPNVVTYTTL 363

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           +N  A  G +EEA  +F +MK  + C PD  +Y  +++  G  G  D A  LF+EM + G
Sbjct: 364 VNGLAKAGRLEEACEVFVEMK-ENNCSPDAIAYNTLIDGLGKAGEADMACGLFKEMKDRG 422

Query: 464 VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           +  N+     +I  LGKA R  +  ++F    ++G  PD
Sbjct: 423 LVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPD 461



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 125/558 (22%), Positives = 222/558 (39%), Gaps = 92/558 (16%)

Query: 118 NPRVRDLKLFARKLNDCDNTEEA--FLRAITEIPHQPTRENALLILNSLK---FWQKSYF 172
           +P V    +    L    N +EA  F   +  +   P       ++N L      +++  
Sbjct: 319 DPGVHTFTVLIDALVKSGNIDEACKFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLEEACE 378

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F  +K  N  P + I YN  +  L    +  +   L  EM    +  +  TY+ +I+  
Sbjct: 379 VFVEMKENNCSP-DAIAYNTLIDGLGKAGEADMACGLFKEMKDRGLVPNLRTYNIMISVL 437

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP-- 290
            +     EA + F  + + G +PD  TY+ ++DV  K G++++VL++ +  V  G +   
Sbjct: 438 GKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKEMVEKGGECII 497

Query: 291 ---------------------DPIAFSVLGKM--------FGESGDYDGIRYVLQEMKSL 321
                                  + F  LG++        F  +G  D    +L+ MK  
Sbjct: 498 SRDSNAGHEGTIEGADRTVEYPSLGFKSLGEITYNTLMSAFIHNGHVDEAVKLLEVMKKH 557

Query: 322 GVQPNLVVYNTLLEAMGKAGK-----------------PGL------------------A 346
              P +V Y TL++ +GKAG+                 P +                  +
Sbjct: 558 ECIPTVVTYTTLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEES 617

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            SLFDEMV  G   D  T + +I    K+     AL+++ RM+E         Y TLL+ 
Sbjct: 618 LSLFDEMVRKGCVADVSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSS 677

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
                 ++ A ++F +++ S    PD + Y  M+N       VD A +L + M    +  
Sbjct: 678 LVKDEKIDFALQIFNELQESSLV-PDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILP 736

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           ++   T L+  LGK+ R+++   +F    + G +PD      +++  SL +     GK+ 
Sbjct: 737 DLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPD------VVAYTSLMDVLGKGGKLS 790

Query: 527 TCL--------QQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRP---FCNC 575
             L        ++  P +V + +LI  +S G E   EE     +++      P     + 
Sbjct: 791 HALIIFRAMAKKRCVPDVVTYSSLI--DSLGKEGRVEEAYYFFENSISKGCTPNVGVYSS 848

Query: 576 LIDICRNRNLNERAHELL 593
           LID    + + +RA EL 
Sbjct: 849 LIDSFGKKGMVDRALELF 866



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 102/219 (46%), Gaps = 7/219 (3%)

Query: 168  QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFG---RQFQLIEQLANEMVSNEIELDNIT 224
            +++Y+FF    S+   P   ++ ++     + G   R  +L E++        I    +T
Sbjct: 825  EEAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNI----VT 880

Query: 225  YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
            Y+ +++   +    + A +  E M K G +PD VTY+ ++D   K G V+E  S ++R  
Sbjct: 881  YNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAESYFKRMK 940

Query: 285  ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344
              G  PD I F+ L +  G+         +   M+  G  P++V YN L++ +G+AGK  
Sbjct: 941  EKGIVPDVITFTSLIESLGKVDKLLEACELFDSMEEEGYNPSVVTYNVLIDILGRAGKVH 1000

Query: 345  LARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALE 383
             A  +F EM   G  PD  T+  + +I         ALE
Sbjct: 1001 EAAMIFHEMKVKGCMPDGITIGIMKRILSVREQQFHALE 1039


>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 528

 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 95/297 (31%), Positives = 150/297 (50%), Gaps = 1/297 (0%)

Query: 206 IEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
           +E L  EMV+    L   T   +IT   R N   +A + F +       P    ++ ++D
Sbjct: 14  LETLLKEMVAEGRPLRPNTLVKLITAYGRGNKSGDAFDLFNQAESFACSPTVHAFTKLID 73

Query: 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325
           +   SG+ E    +Y++ V  G + D  A++VL + FG SG  D    + +EMK  G +P
Sbjct: 74  ILVNSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEP 133

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
           +   Y  L+ A+GKAG+   ARS FD M+E GLTP+  T   L+  + K      AL L+
Sbjct: 134 DEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLF 193

Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445
             M+   +    + YN LL+     G V  A +LF  M   D C PD+Y+Y+ ++N  G 
Sbjct: 194 AEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMT-GDGCSPDSYTYSTLVNGLGK 252

Query: 446 GGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            G V+ A ++F EM + GVA++++    L+  L KA  +D + ++      +G  PD
Sbjct: 253 SGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPD 309



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 105/380 (27%), Positives = 181/380 (47%), Gaps = 10/380 (2%)

Query: 115 YSYNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTRENALLILNSLK---FWQKSY 171
           ++YN  +R    F R     D+  E F R +     +P       ++N+L      Q++ 
Sbjct: 101 FAYNVLIR---YFGRS-GQLDSAMEMF-REMKIKGSEPDEYTYGFLVNALGKAGRVQEAR 155

Query: 172 FFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITC 231
            FF+ +  + L P     YN+ M + R   Q  +   L  EM     +   +TY+ ++  
Sbjct: 156 SFFDAMLERGLTP-NIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDA 214

Query: 232 AKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291
                    A + F +M   G  PD  TYS +++   KSG+VEE   ++   V  G   D
Sbjct: 215 LCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVD 274

Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
            + ++ L     ++G+ D +  +++EM   G  P+   +NT+++A+GKA KP  AR +F 
Sbjct: 275 LVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFA 334

Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411
            MVESG  PD  +   LI  Y +   A  A ++ E M E  +  +   YN+L++  A  G
Sbjct: 335 RMVESGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDG 394

Query: 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC 471
            V+EA  + E+M+ +  C+PD  +Y  ++++ G  G    A  LF++M + GV  + +  
Sbjct: 395 QVDEAFAVLEEMETAG-CRPDVVTYNRLMDMLGKRGENQRAARLFQQMKDKGVEPDTLSY 453

Query: 472 TCLIQCLGKARRIDDLVRVF 491
              I  L    R+D+ + +F
Sbjct: 454 AVRIDGLAFDDRLDEALVLF 473



 Score =  142 bits (358), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 81/279 (29%), Positives = 140/279 (50%), Gaps = 1/279 (0%)

Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS 261
           +F+  E +  ++V    +LD   Y+ +I    R    D A+E F  M   G  PDE TY 
Sbjct: 80  EFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYG 139

Query: 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
            +++   K+G+V+E  S ++  +  G  P+   +++L   F + G  D    +  EMK  
Sbjct: 140 FLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRR 199

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
           G QP++V YN LL+A+  AG+ G AR LF +M   G +PD  T + L+   GK+   ++A
Sbjct: 200 GFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEA 259

Query: 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
            +++  M +    +D + YN+LL   A  G ++   +L ++M    +  PD +S+  +++
Sbjct: 260 HKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGF-HPDAFSFNTIMD 318

Query: 442 IYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK 480
             G     D A E+F  M E G   +++    LI    +
Sbjct: 319 ALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYAR 357



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 84/279 (30%), Positives = 132/279 (47%), Gaps = 1/279 (0%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           TY+ ++   ++    D A+  F  M + G  P  VTY+ +LD    +G+V     L+ + 
Sbjct: 172 TYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKM 231

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
              G  PD   +S L    G+SG  +    V +EM   GV  +LV YN+LL  + KAG  
Sbjct: 232 TGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNM 291

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
                L  EM   G  PD  +   ++   GKA     A E++ RM E+    D I YN L
Sbjct: 292 DRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNIL 351

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           ++  A  G   +A ++ E+M  + +  P+  +Y ++++   + G VD A  + EEM   G
Sbjct: 352 IDSYARFGDAAQARQMLEEMVEAGFI-PETKTYNSLIHWLATDGQVDEAFAVLEEMETAG 410

Query: 464 VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
              +V+    L+  LGK        R+F    D+GV+PD
Sbjct: 411 CRPDVVTYNRLMDMLGKRGENQRAARLFQQMKDKGVEPD 449



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 83/309 (26%), Positives = 145/309 (46%), Gaps = 2/309 (0%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F  +K +   P   + YN+ + +L    +     +L ++M  +    D+ TYST++   
Sbjct: 192 LFAEMKRRGFQP-SVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGL 250

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +    +EA + F  M   G+  D V Y+++L   AK+G ++ V  L +     G+ PD 
Sbjct: 251 GKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDA 310

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
            +F+ +    G++   D  R V   M   G +P+L+ YN L+++  + G    AR + +E
Sbjct: 311 FSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQARQMLEE 370

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           MVE+G  P+ KT  +LI          +A  + E M       D + YN L++M    G 
Sbjct: 371 MVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVVTYNRLMDMLGKRGE 430

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
            + A RLF+ MK     +PD  SY   ++       +D A+ LF++M  +G  ++     
Sbjct: 431 NQRAARLFQQMK-DKGVEPDTLSYAVRIDGLAFDDRLDEALVLFKDMKAVGCPVDKAMYR 489

Query: 473 CLIQCLGKA 481
            LI+   +A
Sbjct: 490 ILIRAAHRA 498



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 59/264 (22%), Positives = 110/264 (41%), Gaps = 1/264 (0%)

Query: 263 ILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG 322
           +L V A  G ++ + +L +  VA G    P     L   +G          +  + +S  
Sbjct: 1   MLVVLASWGILDPLETLLKEMVAEGRPLRPNTLVKLITAYGRGNKSGDAFDLFNQAESFA 60

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382
             P +  +  L++ +  +G+   A  ++ ++V+ G   D      LI+ +G++     A+
Sbjct: 61  CSPTVHAFTKLIDILVNSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAM 120

Query: 383 ELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNI 442
           E++  M+      D   Y  L+N     G V+EA   F+ M L     P+  +Y  +++ 
Sbjct: 121 EMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAM-LERGLTPNIPTYNLLMDA 179

Query: 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           +   G +D A+ LF EM   G   +V+    L+  L  A R+    ++F      G  PD
Sbjct: 180 FRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPD 239

Query: 503 DRLCGCLLSVVSLCETSEDVGKVI 526
                 L++ +      E+  KV 
Sbjct: 240 SYTYSTLVNGLGKSGRVEEAHKVF 263



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 83/183 (45%), Gaps = 5/183 (2%)

Query: 186 ETIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEW 244
           + I YN+ + S  RFG   Q   Q+  EMV      +  TY+++I         DEA   
Sbjct: 344 DLISYNILIDSYARFGDAAQ-ARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAV 402

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
            E M   G  PD VTY+ ++D+  K G+ +    L+++    G +PD ++++V       
Sbjct: 403 LEEMETAGCRPDVVTYNRLMDMLGKRGENQRAARLFQQMKDKGVEPDTLSYAVRIDGLAF 462

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
               D    + ++MK++G   +  +Y  L+ A  +AG   L   L     ES   P E  
Sbjct: 463 DDRLDEALVLFKDMKAVGCPVDKAMYRILIRAAHRAGDTELEAQLKH---ESQFMPVESR 519

Query: 365 LTA 367
           LT+
Sbjct: 520 LTS 522


>gi|168059281|ref|XP_001781632.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162666946|gb|EDQ53588.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 871

 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 131/534 (24%), Positives = 242/534 (45%), Gaps = 23/534 (4%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F+ ++ + + P + I +N  +     G  ++  +++  EM    IE D  T++T+I   
Sbjct: 293 IFDEMQKEGVEP-DRITFNSLIAVCSRGGLWEDSQRVFAEMQRRGIEQDIFTFNTLIDAV 351

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +    + A      M    + P+ VTYS ++D Y K G  EE +SLY     SG +PD 
Sbjct: 352 CKGGQMELAASIMTTMRGKNISPNVVTYSTMIDGYGKLGCFEEAISLYHDMKESGVRPDR 411

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           ++++ L  ++ + G +D      ++M+ +G++ ++V YN L++A GK GK   A  LFD+
Sbjct: 412 VSYNTLIDIYAKLGRFDDALIACKDMERVGLKADVVTYNALIDAYGKQGKYKDAACLFDK 471

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M   GL P+  T +ALI  Y KA   +D   ++   +      D +LY++L++ C   GL
Sbjct: 472 MKGEGLVPNVLTYSALIDSYSKAGMHQDVSNVFTEFKRAGLKPDVVLYSSLIDSCCKCGL 531

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
           VE+A  L ++M  +   +P+  +Y ++++ YG  G  D    +   M      I      
Sbjct: 532 VEDAVVLLQEMTQAG-IQPNIVTYNSLIDAYGRYGQADKLEAVKANMPNSVQKIGERSME 590

Query: 473 CLIQCLGKARRIDD------LVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
            + +     +   D       V VF      G+KP+      +L+  S C + ++   ++
Sbjct: 591 VVRKPPPSQQNASDHTGVLAAVSVFHEMQQFGLKPNVVTFSAILNACSRCASLQEASVLL 650

Query: 527 TCLQQANPKLVA-----FLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICR 581
             ++  +  +        + L E      + + +E    I   +      F N L D+  
Sbjct: 651 EQMRFFDGWVYGIAHGLLMGLREQVWVEAQRLFDE----ISRMDYATGAAFYNALTDVLW 706

Query: 582 NRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAKIVL 641
           +    + A E++       ++     ++  ++ LD+  +SVGAAQ  L  W+  L  +V 
Sbjct: 707 HFGQRQGAQEVVVAAKRRQVWENAWWRSEQQFCLDLHLMSVGAAQAMLHVWLLDLRALVW 766

Query: 642 REEVLPQLFLAETGTGTHKFSQGLAT---AFASHVNKLAAPF---RQSEGKAGC 689
               LP++    TG G H    G++T   A    + ++ APF   R +EG+  C
Sbjct: 767 DGHALPRVLSILTGWGKHSKVAGVSTVKRAVELRLQEIKAPFQVGRYNEGRLVC 820



 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/324 (29%), Positives = 167/324 (51%), Gaps = 4/324 (1%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG-KVEEVLSLYER 282
            YS +++   R     EA++ F+ M K G  P+ +TY+ I+D   K G  +++ L +++ 
Sbjct: 237 AYSAMVSAYGRSGRCREALKVFQAMKKAGCKPNLITYNTIIDACGKGGVDLKQALDIFDE 296

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
               G +PD I F+ L  +    G ++  + V  EM+  G++ ++  +NTL++A+ K G+
Sbjct: 297 MQKEGVEPDRITFNSLIAVCSRGGLWEDSQRVFAEMQRRGIEQDIFTFNTLIDAVCKGGQ 356

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
             LA S+   M    ++P+  T + +I  YGK    ++A+ L+  M+E+    D + YNT
Sbjct: 357 MELAASIMTTMRGKNISPNVVTYSTMIDGYGKLGCFEEAISLYHDMKESGVRPDRVSYNT 416

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
           L+++ A +G  ++A    +DM+     K D  +Y A+++ YG  G   +A  LF++M   
Sbjct: 417 LIDIYAKLGRFDDALIACKDMERVG-LKADVVTYNALIDAYGKQGKYKDAACLFDKMKGE 475

Query: 463 GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDV 522
           G+  NV+  + LI    KA    D+  VF      G+KPD  L   L+     C   ED 
Sbjct: 476 GLVPNVLTYSALIDSYSKAGMHQDVSNVFTEFKRAGLKPDVVLYSSLIDSCCKCGLVEDA 535

Query: 523 GKVITCLQQAN--PKLVAFLNLIE 544
             ++  + QA   P +V + +LI+
Sbjct: 536 VVLLQEMTQAGIQPNIVTYNSLID 559



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/347 (25%), Positives = 155/347 (44%), Gaps = 41/347 (11%)

Query: 238 FDEAIEWFERMYKTGLMPDEVT--YSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAF 295
           ++ A++ +E M +   +  E +   S ++    + GKVE  L ++ R   +G+  +  A+
Sbjct: 179 WERALQGYEWMVQQVHLRSEWSKLASIMISTLGRLGKVEIALDVFNRAQKAGFGNNVYAY 238

Query: 296 SVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP-GLARSLFDEMV 354
           S +   +G SG       V Q MK  G +PNL+ YNT+++A GK G     A  +FDEM 
Sbjct: 239 SAMVSAYGRSGRCREALKVFQAMKKAGCKPNLITYNTIIDACGKGGVDLKQALDIFDEMQ 298

Query: 355 ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN-MC------ 407
           + G+ PD  T  +LI +  +    +D+  ++  M+      D   +NTL++ +C      
Sbjct: 299 KEGVEPDRITFNSLIAVCSRGGLWEDSQRVFAEMQRRGIEQDIFTFNTLIDAVCKGGQME 358

Query: 408 ----------------------------ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAM 439
                                         +G  EEA  L+ DMK S   +PD  SY  +
Sbjct: 359 LAASIMTTMRGKNISPNVVTYSTMIDGYGKLGCFEEAISLYHDMKESG-VRPDRVSYNTL 417

Query: 440 LNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGV 499
           ++IY   G  D+A+   ++M  +G+  +V+    LI   GK  +  D   +F      G+
Sbjct: 418 IDIYAKLGRFDDALIACKDMERVGLKADVVTYNALIDAYGKQGKYKDAACLFDKMKGEGL 477

Query: 500 KPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAFLNLIE 544
            P+      L+   S     +DV  V T  ++A   P +V + +LI+
Sbjct: 478 VPNVLTYSALIDSYSKAGMHQDVSNVFTEFKRAGLKPDVVLYSSLID 524



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 137/281 (48%), Gaps = 2/281 (0%)

Query: 223 ITYSTII-TCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYE 281
           ITY+TII  C K      +A++ F+ M K G+ PD +T+++++ V ++ G  E+   ++ 
Sbjct: 271 ITYNTIIDACGKGGVDLKQALDIFDEMQKEGVEPDRITFNSLIAVCSRGGLWEDSQRVFA 330

Query: 282 RGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG 341
                G + D   F+ L     + G  +    ++  M+   + PN+V Y+T+++  GK G
Sbjct: 331 EMQRRGIEQDIFTFNTLIDAVCKGGQMELAASIMTTMRGKNISPNVVTYSTMIDGYGKLG 390

Query: 342 KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYN 401
               A SL+ +M ESG+ PD  +   LI IY K     DAL   + M       D + YN
Sbjct: 391 CFEEAISLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALIACKDMERVGLKADVVTYN 450

Query: 402 TLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461
            L++     G  ++A  LF+ MK  +   P+  +Y+A+++ Y   G   +   +F E   
Sbjct: 451 ALIDAYGKQGKYKDAACLFDKMK-GEGLVPNVLTYSALIDSYSKAGMHQDVSNVFTEFKR 509

Query: 462 LGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            G+  +V+  + LI    K   ++D V +       G++P+
Sbjct: 510 AGLKPDVVLYSSLIDSCCKCGLVEDAVVLLQEMTQAGIQPN 550


>gi|168002263|ref|XP_001753833.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694809|gb|EDQ81155.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 779

 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 146/610 (23%), Positives = 256/610 (41%), Gaps = 83/610 (13%)

Query: 177 IKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCN 236
           +K + + P    +  V     + G +++ +  L  +M    I+ D ITY+T+++      
Sbjct: 135 MKREKVTPNLITYNTVINACAKGGLEWEGLLGLFAQMRHEGIQPDIITYNTLLSACSSRG 194

Query: 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS 296
           L +EA   F  M + G++PD +TY+A++D+Y ++ + E V  L      +G  PD +A++
Sbjct: 195 LVEEAGMVFRTMNEAGVVPDSITYNALVDIYGQADRHEGVGELLREMEQAGNAPDVVAYN 254

Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356
           +L + +G +G Y     + ++M+  G  P++V ++TLLEA GK G     R LF +M E 
Sbjct: 255 ILIEAYGRAGKYRAAAKMFKQMQEAGCTPDVVTFSTLLEAYGKHGCYDEVRLLFTDMKER 314

Query: 357 GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEA 416
           G  PD  T   LI+++G+  + ++++ L+  + +     D   Y  LL  C   GL + A
Sbjct: 315 GTEPDVNTYNTLIQVFGQGGFFQESINLFWDLLDGGVEPDMSTYAGLLYSCGKGGLHKAA 374

Query: 417 ERL-----------------------------------FEDMKLSDYCKPDNYSYTAMLN 441
           +++                                   F  MK S  CKPD  +Y A++ 
Sbjct: 375 KKIHRHMLQSYVTPTTDGFTGLITAYGNAALYSEATYAFNSMKESG-CKPDLETYNALIG 433

Query: 442 IYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR------------ 489
            +  GG    A   +  M + G++ +V     LI+  G+    DD +             
Sbjct: 434 AHAGGGLYCEAGSAYLTMIDEGISADVSTYNSLIEAFGRGGLFDDAIEFSRDMEEARCSP 493

Query: 490 -------VFGVSIDRGVKP-------DDRLCGCLLSVVSLC---------ETSEDVGKVI 526
                  + GV    G+         D ++ G L SV S C            +D  KV+
Sbjct: 494 NRHTYEALMGVYCTAGLFDEAKAQFLDLQVGGELPSVDSYCLLLSVCARRNRWDDASKVL 553

Query: 527 TCLQQAN-PKLVAFLNLI----EDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICR 581
             + + N P +   +  I     D+ T ++ ++  F  +  D  V +   F N L++   
Sbjct: 554 EEMLEPNMPSIYGVVGGILKGEMDDGTNWQRVEYAFDGLKVDG-VGSNLRFYNALLEALW 612

Query: 582 NRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAKIVL 641
                ERA  +       G+     +++   W++DV  +SVGAA T L  W+  +   + 
Sbjct: 613 CLGQRERACRVFAEARKRGVLAEAFSRSDLMWAIDVHRMSVGAAMTTLIVWLADMKAEID 672

Query: 642 REEVLPQLFLAETGTGTHKFSQGL-----ATAFASHVNKLAAPFRQSEGKAGCFVATRED 696
            +   P L    T  G    ++ L     A A    +  + APF  +E   G  +     
Sbjct: 673 NKSTFPPLLSIVTKWGDKDPNRDLKSLPAARAILGGLAAIGAPFDFAEWNEGRIITWAPV 732

Query: 697 LVSWVQ-ARP 705
           L  W+  ARP
Sbjct: 733 LQKWLAGARP 742



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 88/363 (24%), Positives = 158/363 (43%), Gaps = 46/363 (12%)

Query: 177 IKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCN 236
           +K +  + +E    N+T  + R G   + +E   N++  N+  L           A+R +
Sbjct: 1   MKGKYSYDVENAINNLTSLAPR-GSIAKTMEGYRNKLTINDFSL------IFREFAQRSD 53

Query: 237 LFDEAIEWFERMYKTG-LMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAF 295
            + +A+  F+ M +     P+E  Y+ ++ +  + G +++   L+E    +  + +  +F
Sbjct: 54  -WQKALRLFKYMQRHQWCKPNEHVYTIMIGIMGREGMLDKASELFEDMPLNDVEWNVYSF 112

Query: 296 SVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG-------------- 341
           + L   +G +G ++   ++L  MK   V PNL+ YNT++ A  K G              
Sbjct: 113 TALINAYGRNGQHEASLHLLARMKREKVTPNLITYNTVINACAKGGLEWEGLLGLFAQMR 172

Query: 342 ----KPGL------------------ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAK 379
               +P +                  A  +F  M E+G+ PD  T  AL+ IYG+A   +
Sbjct: 173 HEGIQPDIITYNTLLSACSSRGLVEEAGMVFRTMNEAGVVPDSITYNALVDIYGQADRHE 232

Query: 380 DALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAM 439
              EL   M +     D + YN L+      G    A ++F+ M+ +  C PD  +++ +
Sbjct: 233 GVGELLREMEQAGNAPDVVAYNILIEAYGRAGKYRAAAKMFKQMQEAG-CTPDVVTFSTL 291

Query: 440 LNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGV 499
           L  YG  G  D    LF +M E G   +V     LIQ  G+     + + +F   +D GV
Sbjct: 292 LEAYGKHGCYDEVRLLFTDMKERGTEPDVNTYNTLIQVFGQGGFFQESINLFWDLLDGGV 351

Query: 500 KPD 502
           +PD
Sbjct: 352 EPD 354



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 126/284 (44%), Gaps = 7/284 (2%)

Query: 295 FSVLGKMFGESGDYDGIRYVLQEM-KSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
           FS++ + F +  D+     + + M +    +PN  VY  ++  MG+ G    A  LF++M
Sbjct: 41  FSLIFREFAQRSDWQKALRLFKYMQRHQWCKPNEHVYTIMIGIMGREGMLDKASELFEDM 100

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
             + +  +  + TALI  YG+    + +L L  RM+  K   + I YNT++N CA  GL 
Sbjct: 101 PLNDVEWNVYSFTALINAYGRNGQHEASLHLLARMKREKVTPNLITYNTVINACAKGGLE 160

Query: 414 EEA-ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
            E    LF  M+  +  +PD  +Y  +L+   S G V+ A  +F  M+E GV  + +   
Sbjct: 161 WEGLLGLFAQMR-HEGIQPDIITYNTLLSACSSRGLVEEAGMVFRTMNEAGVVPDSITYN 219

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQA 532
            L+   G+A R + +  +       G  PD      L+             K+   +Q+A
Sbjct: 220 ALVDIYGQADRHEGVGELLREMEQAGNAPDVVAYNILIEAYGRAGKYRAAAKMFKQMQEA 279

Query: 533 N--PKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCN 574
              P +V F  L+E  + G     +E R +  D +     P  N
Sbjct: 280 GCTPDVVTFSTLLE--AYGKHGCYDEVRLLFTDMKERGTEPDVN 321


>gi|297805706|ref|XP_002870737.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316573|gb|EFH46996.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 680

 Score =  155 bits (391), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 109/416 (26%), Positives = 198/416 (47%), Gaps = 5/416 (1%)

Query: 96  NPTKPRRSVLSLQRQKRSTY-SYNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTR 154
           N T   +++   +R +RS +  +N    D+      ++   N +E F    T    Q + 
Sbjct: 68  NTTSSFQALRKHRRYQRSAFLDHNV---DMDELLASIHQTQNEKELFSLLSTYKDRQLSI 124

Query: 155 ENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMV 214
              + +L+    WQ+S    +W+  +  +      YNV ++++   +QF +   L +EM 
Sbjct: 125 RFMVSLLSRENDWQRSLALLDWVHEEAKYTPSVFAYNVVLRNVLRAKQFGIAHGLFDEMR 184

Query: 215 SNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVE 274
              +  D  TYST+IT   +  +FD A+ W ++M +  +  D V YS ++++  +     
Sbjct: 185 QRALAPDRYTYSTLITSFGKEGMFDSALSWLQKMEQDRVSGDLVLYSNLIELSRRLCDYS 244

Query: 275 EVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLL 334
           + +S++ R   SG  PD +A++ +  ++G++  +   R +++EM   GV PN V Y+TLL
Sbjct: 245 KAISIFSRLKRSGITPDLVAYNSMINVYGKAKLFKEARVLIKEMNEAGVSPNTVSYSTLL 304

Query: 335 EAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWP 394
               +  K   A S+F EM E     D  T   +I +YG+    K+A  L+  +R+    
Sbjct: 305 SVYVENHKFLEALSVFAEMKEVNCPLDLTTCNIMIDVYGQLDMVKEADRLFWSLRKMDIE 364

Query: 395 MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIE 454
            + + YNT+L +  +  L  EA  LF  M+  D  + +  +Y  M+ IYG     + A  
Sbjct: 365 PNVVSYNTILRVYGEAELFGEAIHLFRLMQRKD-IEQNVVTYNTMIKIYGKTMEHEKATN 423

Query: 455 LFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
           L +EM   G+  N +  + +I   GKA ++D    +F      GV+ D  L   ++
Sbjct: 424 LVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMI 479



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 93/407 (22%), Positives = 187/407 (45%), Gaps = 10/407 (2%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K   + P + + YN  +      + F+    L  EM    +  + ++YS
Sbjct: 243 YSKAISIFSRLKRSGITP-DLVAYNSMINVYGKAKLFKEARVLIKEMNEAGVSPNTVSYS 301

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T+++     + F EA+  F  M +     D  T + ++DVY +   V+E   L+      
Sbjct: 302 TLLSVYVENHKFLEALSVFAEMKEVNCPLDLTTCNIMIDVYGQLDMVKEADRLFWSLRKM 361

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
             +P+ ++++ + +++GE+  +    ++ + M+   ++ N+V YNT+++  GK  +   A
Sbjct: 362 DIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKA 421

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GKA     A  L++++R +   +D +LY T++  
Sbjct: 422 TNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVA 481

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
              +GL+  A+RL  ++KL     PDN      + I    G+ + A  +F +  E G   
Sbjct: 482 YERVGLMGHAKRLLHELKL-----PDNIPRETAITILAKAGSTEEATWVFRQAFESGEVK 536

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           ++    C+I    + +R  +++ VF      G  PD      +L+        E    V 
Sbjct: 537 DISVFGCMINLYSRNQRYVNVIEVFEKMRTAGYFPDSNAIAMVLNAYGKQREFEKADTVY 596

Query: 527 TCLQQAN---PKLVAFLNL-IEDNSTGFENIKEEFRNVIKDTEVDAR 569
             +Q+     P  V F  L +  +   FE ++  F  +  D  V+++
Sbjct: 597 REMQEEGCVFPDEVHFQMLSLYSSKKDFEMVESLFERLESDPNVNSK 643



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 75/318 (23%), Positives = 146/318 (45%), Gaps = 35/318 (11%)

Query: 217 EIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV 276
           +IE + ++Y+TI+       LF EAI  F  M +  +  + VTY+ ++ +Y K+ + E+ 
Sbjct: 362 DIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKA 421

Query: 277 LSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA 336
            +L +   + G +P+ I +S +  ++G++G  D    + Q+++S GV+ + V+Y T++ A
Sbjct: 422 TNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVA 481

Query: 337 MGKAGKPGLARSLFDEM-------------------------------VESGLTPDEKTL 365
             + G  G A+ L  E+                                ESG   D    
Sbjct: 482 YERVGLMGHAKRLLHELKLPDNIPRETAITILAKAGSTEEATWVFRQAFESGEVKDISVF 541

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
             +I +Y + +   + +E++E+MR   +  D      +LN        E+A+ ++ +M+ 
Sbjct: 542 GCMINLYSRNQRYVNVIEVFEKMRTAGYFPDSNAIAMVLNAYGKQREFEKADTVYREMQE 601

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL-GKARRI 484
                PD   +  ML++Y S  + +    LFE + E    +N      ++  L  +A ++
Sbjct: 602 EGCVFPDEVHFQ-MLSLYSSKKDFEMVESLFERL-ESDPNVNSKELHLVVAALYERADKL 659

Query: 485 DDLVRVFGVSIDRGV-KP 501
           +D  RV     +RG+ KP
Sbjct: 660 NDASRVMNRMRERGILKP 677



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 68/306 (22%), Positives = 138/306 (45%), Gaps = 15/306 (4%)

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           +A+    R  ++  +   V    +L    ++   +E+ SL      S +K   ++   + 
Sbjct: 74  QALRKHRRYQRSAFLDHNVDMDELLASIHQTQNEKELFSL-----LSTYKDRQLSIRFMV 128

Query: 300 KMFGESGDYDG----IRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVE 355
            +     D+      + +V +E K     P++  YN +L  + +A + G+A  LFDEM +
Sbjct: 129 SLLSRENDWQRSLALLDWVHEEAK---YTPSVFAYNVVLRNVLRAKQFGIAHGLFDEMRQ 185

Query: 356 SGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEE 415
             L PD  T + LI  +GK      AL   ++M +++   D +LY+ L+ +   +    +
Sbjct: 186 RALAPDRYTYSTLITSFGKEGMFDSALSWLQKMEQDRVSGDLVLYSNLIELSRRLCDYSK 245

Query: 416 AERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLI 475
           A  +F  +K S    PD  +Y +M+N+YG       A  L +EM+E GV+ N +  + L+
Sbjct: 246 AISIFSRLKRSG-ITPDLVAYNSMINVYGKAKLFKEARVLIKEMNEAGVSPNTVSYSTLL 304

Query: 476 QCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN-- 533
               +  +  + + VF    +     D   C  ++ V    +  ++  ++   L++ +  
Sbjct: 305 SVYVENHKFLEALSVFAEMKEVNCPLDLTTCNIMIDVYGQLDMVKEADRLFWSLRKMDIE 364

Query: 534 PKLVAF 539
           P +V++
Sbjct: 365 PNVVSY 370



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/279 (21%), Positives = 114/279 (40%), Gaps = 34/279 (12%)

Query: 142 LRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGR 201
           LR +   P+  +    L +    + + ++   F  ++ +++     + YN  +K      
Sbjct: 358 LRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDI-EQNVVTYNTMIKIYGKTM 416

Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS 261
           + +    L  EM S  IE + ITYSTII+   +    D A   F+++  +G+  D+V Y 
Sbjct: 417 EHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQ 476

Query: 262 AILDVY-------------------------------AKSGKVEEVLSLYERGVASGWKP 290
            ++  Y                               AK+G  EE   ++ +   SG   
Sbjct: 477 TMIVAYERVGLMGHAKRLLHELKLPDNIPRETAITILAKAGSTEEATWVFRQAFESGEVK 536

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
           D   F  +  ++  +  Y  +  V ++M++ G  P+      +L A GK  +   A +++
Sbjct: 537 DISVFGCMINLYSRNQRYVNVIEVFEKMRTAGYFPDSNAIAMVLNAYGKQREFEKADTVY 596

Query: 351 DEMVESG-LTPDEKTLTALIKIYGKARWAKDALELWERM 388
            EM E G + PDE     ++ +Y   +  +    L+ER+
Sbjct: 597 REMQEEGCVFPDEVHFQ-MLSLYSSKKDFEMVESLFERL 634


>gi|15242530|ref|NP_198814.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171449|sp|Q9FLD8.1|PP408_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g39980, chloroplastic; Flags: Precursor
 gi|10176990|dbj|BAB10222.1| unnamed protein product [Arabidopsis thaliana]
 gi|332007115|gb|AED94498.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 678

 Score =  155 bits (391), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 109/416 (26%), Positives = 198/416 (47%), Gaps = 5/416 (1%)

Query: 96  NPTKPRRSVLSLQRQKRSTY-SYNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTR 154
           N T   +++   +R +RS +  +N    D+      ++   N +E F    T    Q + 
Sbjct: 66  NTTSSFQALRKHRRYQRSAFLDHNV---DMDELLASIHQTQNEKELFSLLSTYKDRQLSI 122

Query: 155 ENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMV 214
              + +L+    WQ+S    +W+  +  +      YNV ++++   +QF +   L +EM 
Sbjct: 123 RFMVSLLSRENDWQRSLALLDWVHEEAKYTPSVFAYNVVLRNVLRAKQFDIAHGLFDEMR 182

Query: 215 SNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVE 274
              +  D  TYST+IT   +  +FD A+ W ++M +  +  D V YS ++++  +     
Sbjct: 183 QRALAPDRYTYSTLITSFGKEGMFDSALSWLQKMEQDRVSGDLVLYSNLIELSRRLCDYS 242

Query: 275 EVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLL 334
           + +S++ R   SG  PD +A++ +  ++G++  +   R +++EM   GV PN V Y+TLL
Sbjct: 243 KAISIFSRLKRSGITPDLVAYNSMINVYGKAKLFREARLLIKEMNEAGVLPNTVSYSTLL 302

Query: 335 EAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWP 394
               +  K   A S+F EM E     D  T   +I +YG+    K+A  L+  +R+    
Sbjct: 303 SVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSLRKMDIE 362

Query: 395 MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIE 454
            + + YNT+L +  +  L  EA  LF  M+  D  + +  +Y  M+ IYG     + A  
Sbjct: 363 PNVVSYNTILRVYGEAELFGEAIHLFRLMQRKD-IEQNVVTYNTMIKIYGKTMEHEKATN 421

Query: 455 LFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
           L +EM   G+  N +  + +I   GKA ++D    +F      GV+ D  L   ++
Sbjct: 422 LVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMI 477



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 93/407 (22%), Positives = 188/407 (46%), Gaps = 10/407 (2%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K   + P + + YN  +      + F+    L  EM    +  + ++YS
Sbjct: 241 YSKAISIFSRLKRSGITP-DLVAYNSMINVYGKAKLFREARLLIKEMNEAGVLPNTVSYS 299

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T+++     + F EA+  F  M +     D  T + ++DVY +   V+E   L+      
Sbjct: 300 TLLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSLRKM 359

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
             +P+ ++++ + +++GE+  +    ++ + M+   ++ N+V YNT+++  GK  +   A
Sbjct: 360 DIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKA 419

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GKA     A  L++++R +   +D +LY T++  
Sbjct: 420 TNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVA 479

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
              +GL+  A+RL  ++KL     PDN      + I    G  + A  +F +  E G   
Sbjct: 480 YERVGLMGHAKRLLHELKL-----PDNIPRETAITILAKAGRTEEATWVFRQAFESGEVK 534

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           ++    C+I    + +R  +++ VF      G  PD  +   +L+        E    V 
Sbjct: 535 DISVFGCMINLYSRNQRYVNVIEVFEKMRTAGYFPDSNVIAMVLNAYGKQREFEKADTVY 594

Query: 527 TCLQQAN---PKLVAFLNL-IEDNSTGFENIKEEFRNVIKDTEVDAR 569
             +Q+     P  V F  L +  +   FE ++  F+ +  D  V+++
Sbjct: 595 REMQEEGCVFPDEVHFQMLSLYSSKKDFEMVESLFQRLESDPNVNSK 641



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 136/290 (46%), Gaps = 1/290 (0%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
             Y+ ++    R   FD A   F+ M +  L PD  TYS ++  + K G  +  LS  ++
Sbjct: 156 FAYNVVLRNVLRAKQFDIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFDSALSWLQK 215

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
                   D + +S L ++     DY     +   +K  G+ P+LV YN+++   GKA  
Sbjct: 216 MEQDRVSGDLVLYSNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINVYGKAKL 275

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
              AR L  EM E+G+ P+  + + L+ +Y +     +AL ++  M+E    +D    N 
Sbjct: 276 FREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNI 335

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
           ++++   + +V+EA+RLF  ++  D  +P+  SY  +L +YG       AI LF  M   
Sbjct: 336 MIDVYGQLDMVKEADRLFWSLRKMD-IEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRK 394

Query: 463 GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSV 512
            +  NV+    +I+  GK    +    +      RG++P+      ++S+
Sbjct: 395 DIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISI 444



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 74/318 (23%), Positives = 147/318 (46%), Gaps = 35/318 (11%)

Query: 217 EIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV 276
           +IE + ++Y+TI+       LF EAI  F  M +  +  + VTY+ ++ +Y K+ + E+ 
Sbjct: 360 DIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKA 419

Query: 277 LSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA 336
            +L +   + G +P+ I +S +  ++G++G  D    + Q+++S GV+ + V+Y T++ A
Sbjct: 420 TNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVA 479

Query: 337 MGKAGKPGLARSLFDEM-------------------------------VESGLTPDEKTL 365
             + G  G A+ L  E+                                ESG   D    
Sbjct: 480 YERVGLMGHAKRLLHELKLPDNIPRETAITILAKAGRTEEATWVFRQAFESGEVKDISVF 539

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
             +I +Y + +   + +E++E+MR   +  D  +   +LN        E+A+ ++ +M+ 
Sbjct: 540 GCMINLYSRNQRYVNVIEVFEKMRTAGYFPDSNVIAMVLNAYGKQREFEKADTVYREMQE 599

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL-GKARRI 484
                PD   +  ML++Y S  + +    LF+ + E    +N      ++  L  +A ++
Sbjct: 600 EGCVFPDEVHFQ-MLSLYSSKKDFEMVESLFQRL-ESDPNVNSKELHLVVAALYERADKL 657

Query: 485 DDLVRVFGVSIDRGV-KP 501
           +D  RV     +RG+ KP
Sbjct: 658 NDASRVMNRMRERGILKP 675



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 67/306 (21%), Positives = 136/306 (44%), Gaps = 15/306 (4%)

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           +A+    R  ++  +   V    +L    ++   +E+ SL      S +K   ++   + 
Sbjct: 72  QALRKHRRYQRSAFLDHNVDMDELLASIHQTQNEKELFSL-----LSTYKDRQLSIRFMV 126

Query: 300 KMFGESGDYDG----IRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVE 355
            +     D+      + +V +E K     P++  YN +L  + +A +  +A  LFDEM +
Sbjct: 127 SLLSRENDWQRSLALLDWVHEEAK---YTPSVFAYNVVLRNVLRAKQFDIAHGLFDEMRQ 183

Query: 356 SGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEE 415
             L PD  T + LI  +GK      AL   ++M +++   D +LY+ L+ +   +    +
Sbjct: 184 RALAPDRYTYSTLITSFGKEGMFDSALSWLQKMEQDRVSGDLVLYSNLIELSRRLCDYSK 243

Query: 416 AERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLI 475
           A  +F  +K S    PD  +Y +M+N+YG       A  L +EM+E GV  N +  + L+
Sbjct: 244 AISIFSRLKRSG-ITPDLVAYNSMINVYGKAKLFREARLLIKEMNEAGVLPNTVSYSTLL 302

Query: 476 QCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN-- 533
               +  +  + + VF    +     D   C  ++ V    +  ++  ++   L++ +  
Sbjct: 303 SVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSLRKMDIE 362

Query: 534 PKLVAF 539
           P +V++
Sbjct: 363 PNVVSY 368



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/253 (22%), Positives = 105/253 (41%), Gaps = 33/253 (13%)

Query: 142 LRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGR 201
           LR +   P+  +    L +    + + ++   F  ++ +++     + YN  +K      
Sbjct: 356 LRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDI-EQNVVTYNTMIKIYGKTM 414

Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS 261
           + +    L  EM S  IE + ITYSTII+   +    D A   F+++  +G+  D+V Y 
Sbjct: 415 EHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQ 474

Query: 262 AILDVY-------------------------------AKSGKVEEVLSLYERGVASGWKP 290
            ++  Y                               AK+G+ EE   ++ +   SG   
Sbjct: 475 TMIVAYERVGLMGHAKRLLHELKLPDNIPRETAITILAKAGRTEEATWVFRQAFESGEVK 534

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
           D   F  +  ++  +  Y  +  V ++M++ G  P+  V   +L A GK  +   A +++
Sbjct: 535 DISVFGCMINLYSRNQRYVNVIEVFEKMRTAGYFPDSNVIAMVLNAYGKQREFEKADTVY 594

Query: 351 DEMVESG-LTPDE 362
            EM E G + PDE
Sbjct: 595 REMQEEGCVFPDE 607


>gi|168062855|ref|XP_001783392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162665090|gb|EDQ51786.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 540

 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 96/340 (28%), Positives = 172/340 (50%), Gaps = 2/340 (0%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           +F+ +K + L P    +  V     + G   +  E L  EM    I+ D + YS +I   
Sbjct: 116 YFSQLKDEGLLPDSGTYCAVLSACRKVGNIDKGNETL-KEMREAGIKPDQVAYSILIDMF 174

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +    ++A   F  +  +G +PD V Y+ ++  +AK G V++   +++    S    DP
Sbjct: 175 GKAGRHEDAAATFRELQMSGYLPDSVAYNTLIHAFAKVGMVDQATLVFKEAQRSFCLDDP 234

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           + F  + +++ ++   D   +VL+ MK +G+QPN + Y ++L A  +A +P  A  LF+E
Sbjct: 235 VIFYTMIQVYAKARMADQALHVLKLMKEIGLQPNELGYGSVLNAFMRANQPMGAIKLFEE 294

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M ES     E T   ++ +Y KA +   A EL  +MR+  +  + + Y+TL++M   +G 
Sbjct: 295 MQESNCRFGESTYITMLNVYSKAGFHSAAEELLAKMRQLGFRRNVVAYSTLIDMYGKVGK 354

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
           ++EA RLF  MK    CK +   Y  ML++YG  G +++A  L  E+ +  +  + +  T
Sbjct: 355 LQEATRLFSTMKQQG-CKGNLIVYNTMLDMYGKAGRINDAERLMAELKDSKLVPDTVTYT 413

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSV 512
            LI    +  R ++ +RVF      G+K D  L   +++V
Sbjct: 414 TLINAYNRLGRFEECIRVFEQHRADGLKLDRILVAIMINV 453



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 102/363 (28%), Positives = 174/363 (47%), Gaps = 5/363 (1%)

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTII-TCAKRCNLFDEAI 242
           P +  FY + +K      +FQ  +   ++M       D + Y+ +I    KR N F +A+
Sbjct: 56  PPDIKFYALVIKEAINTGRFQTAQHWFSKMKLLGCPPDIVIYNILILEYGKRGN-FSQAM 114

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
           ++F ++   GL+PD  TY A+L    K G +++     +    +G KPD +A+S+L  MF
Sbjct: 115 KYFSQLKDEGLLPDSGTYCAVLSACRKVGNIDKGNETLKEMREAGIKPDQVAYSILIDMF 174

Query: 303 GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
           G++G ++      +E++  G  P+ V YNTL+ A  K G    A  +F E   S    D 
Sbjct: 175 GKAGRHEDAAATFRELQMSGYLPDSVAYNTLIHAFAKVGMVDQATLVFKEAQRSFCLDDP 234

Query: 363 KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED 422
                +I++Y KAR A  AL + + M+E     + + Y ++LN          A +LFE+
Sbjct: 235 VIFYTMIQVYAKARMADQALHVLKLMKEIGLQPNELGYGSVLNAFMRANQPMGAIKLFEE 294

Query: 423 MKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKAR 482
           M+ S+ C+    +Y  MLN+Y   G    A EL  +M +LG   NV+  + LI   GK  
Sbjct: 295 MQESN-CRFGESTYITMLNVYSKAGFHSAAEELLAKMRQLGFRRNVVAYSTLIDMYGKVG 353

Query: 483 RIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAFL 540
           ++ +  R+F     +G K +  +   +L +        D  +++  L+ +   P  V + 
Sbjct: 354 KLQEATRLFSTMKQQGCKGNLIVYNTMLDMYGKAGRINDAERLMAELKDSKLVPDTVTYT 413

Query: 541 NLI 543
            LI
Sbjct: 414 TLI 416



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 123/246 (50%), Gaps = 1/246 (0%)

Query: 218 IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL 277
           ++ + + Y +++    R N    AI+ FE M ++     E TY  +L+VY+K+G      
Sbjct: 265 LQPNELGYGSVLNAFMRANQPMGAIKLFEEMQESNCRFGESTYITMLNVYSKAGFHSAAE 324

Query: 278 SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
            L  +    G++ + +A+S L  M+G+ G       +   MK  G + NL+VYNT+L+  
Sbjct: 325 ELLAKMRQLGFRRNVVAYSTLIDMYGKVGKLQEATRLFSTMKQQGCKGNLIVYNTMLDMY 384

Query: 338 GKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDF 397
           GKAG+   A  L  E+ +S L PD  T T LI  Y +    ++ + ++E+ R +   +D 
Sbjct: 385 GKAGRINDAERLMAELKDSKLVPDTVTYTTLINAYNRLGRFEECIRVFEQHRADGLKLDR 444

Query: 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE 457
           IL   ++N+        +   L E M  S   +PD      ++ IY  GG  +NA EL  
Sbjct: 445 ILVAIMINVYGKARQYSKLAELLEVMPKSG-IQPDTRILKTVVEIYEDGGMCENAAELLR 503

Query: 458 EMSELG 463
           +++ELG
Sbjct: 504 KINELG 509



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 99/213 (46%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           +L  EM  +       TY T++    +      A E   +M + G   + V YS ++D+Y
Sbjct: 290 KLFEEMQESNCRFGESTYITMLNVYSKAGFHSAAEELLAKMRQLGFRRNVVAYSTLIDMY 349

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            K GK++E   L+      G K + I ++ +  M+G++G  +    ++ E+K   + P+ 
Sbjct: 350 GKVGKLQEATRLFSTMKQQGCKGNLIVYNTMLDMYGKAGRINDAERLMAELKDSKLVPDT 409

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
           V Y TL+ A  + G+      +F++    GL  D   +  +I +YGKAR      EL E 
Sbjct: 410 VTYTTLINAYNRLGRFEECIRVFEQHRADGLKLDRILVAIMINVYGKARQYSKLAELLEV 469

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLF 420
           M ++    D  +  T++ +  D G+ E A  L 
Sbjct: 470 MPKSGIQPDTRILKTVVEIYEDGGMCENAAELL 502



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 87/184 (47%)

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
           E+L  +M       + + YST+I    +     EA   F  M + G   + + Y+ +LD+
Sbjct: 324 EELLAKMRQLGFRRNVVAYSTLIDMYGKVGKLQEATRLFSTMKQQGCKGNLIVYNTMLDM 383

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
           Y K+G++ +   L      S   PD + ++ L   +   G ++    V ++ ++ G++ +
Sbjct: 384 YGKAGRINDAERLMAELKDSKLVPDTVTYTTLINAYNRLGRFEECIRVFEQHRADGLKLD 443

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
            ++   ++   GKA +      L + M +SG+ PD + L  +++IY      ++A EL  
Sbjct: 444 RILVAIMINVYGKARQYSKLAELLEVMPKSGIQPDTRILKTVVEIYEDGGMCENAAELLR 503

Query: 387 RMRE 390
           ++ E
Sbjct: 504 KINE 507



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 65/135 (48%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           I YN  +       +    E+L  E+  +++  D +TY+T+I    R   F+E I  FE+
Sbjct: 375 IVYNTMLDMYGKAGRINDAERLMAELKDSKLVPDTVTYTTLINAYNRLGRFEECIRVFEQ 434

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
               GL  D +  + +++VY K+ +  ++  L E    SG +PD      + +++ + G 
Sbjct: 435 HRADGLKLDRILVAIMINVYGKARQYSKLAELLEVMPKSGIQPDTRILKTVVEIYEDGGM 494

Query: 308 YDGIRYVLQEMKSLG 322
            +    +L+++  LG
Sbjct: 495 CENAAELLRKINELG 509


>gi|326487476|dbj|BAJ89722.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 805

 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 126/485 (25%), Positives = 211/485 (43%), Gaps = 29/485 (5%)

Query: 142 LRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSL-RFG 200
           +RA T + H  +RE           ++++   F+ ++ + + P   + YNV +    R G
Sbjct: 183 VRAYTTVLHALSREGR---------YERALRLFDELRREGVAPTR-VTYNVVLDVYGRMG 232

Query: 201 RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTY 260
           R +  +  L  +M +  +E D  T ST+I  A R  L DEA+ +FE +   G  P  VTY
Sbjct: 233 RSWPRVVALLADMRAAGVEPDGFTASTVIAAAGRDGLVDEAVAFFEDLKARGHAPCVVTY 292

Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
           +A+L V+ K+G   E L +      +G KPD + ++ L   +  +G Y      +  M  
Sbjct: 293 NALLQVFGKAGNYTEALRVLREMEDAGCKPDAVTYNELAGSYARAGFYQEAAKCIDTMIG 352

Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380
            G+ PN   YNT++ A G AGK   A +LFD M ++G  P   T   ++ + GK      
Sbjct: 353 KGLLPNTFTYNTIMTAYGNAGKVDEALALFDRMKKNGFIPYTNTYNLVLGMLGKKSRFAA 412

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPD--NYSYTA 438
            LE+   M  +    + + +NTLL +C   G+     R+ E MK    CK +    +Y  
Sbjct: 413 MLEMLGEMSRSGCTPNRVTWNTLLAVCGKRGMESYVTRVLEGMK---SCKVELCRDTYNT 469

Query: 439 MLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRG 498
           ++  YG  G+  NA ++++EM+  G A  +     L+  L +         +       G
Sbjct: 470 LICAYGRCGSRANAFKMYDEMTAAGFAPCLTTYNALLNVLSRQGDWTAARSIVSKMKSEG 529

Query: 499 VKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAFLNLIEDN--STGFENIK 554
            KP+D     LL   +    +  +  +   + Q N  P  V    L+  N      E I+
Sbjct: 530 FKPNDMSYSLLLQCHAKGGNAAGIEAIEKEVYQGNIFPSWVILRTLVIANFKCRRLEGIE 589

Query: 555 EEFRNVIKDTEVDARRP---FCNCLIDICRNRNLNERAHELLYLGTLYGLYPGL--HNKT 609
             F+ V    +    +P     N ++ I     L  +A E+       GL P L  +N  
Sbjct: 590 RAFQEV----KARGHKPDLVILNSMLSIYAKNGLYSKAMEMFESIEQLGLSPDLITYNSL 645

Query: 610 LDEWS 614
           +D ++
Sbjct: 646 MDMYA 650



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 143/305 (46%), Gaps = 10/305 (3%)

Query: 206 IEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
           + ++   M S ++EL   TY+T+I    RC     A + ++ M   G  P   TY+A+L+
Sbjct: 448 VTRVLEGMKSCKVELCRDTYNTLICAYGRCGSRANAFKMYDEMTAAGFAPCLTTYNALLN 507

Query: 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325
           V ++ G      S+  +  + G+KP+ +++S+L +   + G+  GI  + +E+    + P
Sbjct: 508 VLSRQGDWTAARSIVSKMKSEGFKPNDMSYSLLLQCHAKGGNAAGIEAIEKEVYQGNIFP 567

Query: 326 NLVVYNTLLEAMGKAGK-PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384
           + V+  TL+ A  K  +  G+ R+ F E+   G  PD   L +++ IY K      A+E+
Sbjct: 568 SWVILRTLVIANFKCRRLEGIERA-FQEVKARGHKPDLVILNSMLSIYAKNGLYSKAMEM 626

Query: 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK--------LSDYCKPDNYSY 436
           +E + +     D I YN+L++M A      EAE++   ++             KPD  SY
Sbjct: 627 FESIEQLGLSPDLITYNSLMDMYAKSNEPWEAEKILNRLRSSQSQQQQQQQQLKPDVVSY 686

Query: 437 TAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496
             ++N +   G +  A  +  EM   GVA  V+    L+          +   V G  I 
Sbjct: 687 NTVINGFCKEGLIKEAQRVLSEMIADGVAPCVITYHTLVGGYASREMFAEAREVVGYMIQ 746

Query: 497 RGVKP 501
           R +KP
Sbjct: 747 RKLKP 751



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 105/214 (49%), Gaps = 10/214 (4%)

Query: 177 IKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCN 236
           +   N+FP   I   + + + +  R+ + IE+   E+ +   + D +  +++++   +  
Sbjct: 560 VYQGNIFPSWVILRTLVIANFKC-RRLEGIERAFQEVKARGHKPDLVILNSMLSIYAKNG 618

Query: 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER---------GVASG 287
           L+ +A+E FE + + GL PD +TY++++D+YAKS +  E   +  R              
Sbjct: 619 LYSKAMEMFESIEQLGLSPDLITYNSLMDMYAKSNEPWEAEKILNRLRSSQSQQQQQQQQ 678

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
            KPD ++++ +   F + G     + VL EM + GV P ++ Y+TL+           AR
Sbjct: 679 LKPDVVSYNTVINGFCKEGLIKEAQRVLSEMIADGVAPCVITYHTLVGGYASREMFAEAR 738

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
            +   M++  L P E T   ++  Y +A+  +DA
Sbjct: 739 EVVGYMIQRKLKPMELTYRRVVDSYCRAKRYEDA 772



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/266 (22%), Positives = 114/266 (42%), Gaps = 12/266 (4%)

Query: 153 TRENALL-ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLAN 211
           T  NALL +L+    W  +    + +KS+   P + + Y++ ++    G     IE +  
Sbjct: 500 TTYNALLNVLSRQGDWTAARSIVSKMKSEGFKPND-MSYSLLLQCHAKGGNAAGIEAIEK 558

Query: 212 EMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG 271
           E+    I    +   T++    +C   +     F+ +   G  PD V  +++L +YAK+G
Sbjct: 559 EVYQGNIFPSWVILRTLVIANFKCRRLEGIERAFQEVKARGHKPDLVILNSMLSIYAKNG 618

Query: 272 KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMK---------SLG 322
              + + ++E     G  PD I ++ L  M+ +S +      +L  ++            
Sbjct: 619 LYSKAMEMFESIEQLGLSPDLITYNSLMDMYAKSNEPWEAEKILNRLRSSQSQQQQQQQQ 678

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382
           ++P++V YNT++    K G    A+ +  EM+  G+ P   T   L+  Y       +A 
Sbjct: 679 LKPDVVSYNTVINGFCKEGLIKEAQRVLSEMIADGVAPCVITYHTLVGGYASREMFAEAR 738

Query: 383 ELWERMRENKW-PMDFILYNTLLNMC 407
           E+   M + K  PM+      + + C
Sbjct: 739 EVVGYMIQRKLKPMELTYRRVVDSYC 764



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 91/200 (45%), Gaps = 3/200 (1%)

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM-VESGLTPDEK 363
           SG ++    +L+  ++ G       +  ++ A+G+ G+     +L DEM +  G   D +
Sbjct: 125 SGHWEWALALLRWARAEGAADGPAPFEMVVRALGREGRHDAVCALLDEMPLPPGARLDVR 184

Query: 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV-EEAERLFED 422
             T ++    +    + AL L++ +R        + YN +L++   +G        L  D
Sbjct: 185 AYTTVLHALSREGRYERALRLFDELRREGVAPTRVTYNVVLDVYGRMGRSWPRVVALLAD 244

Query: 423 MKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKAR 482
           M+ +   +PD ++ + ++   G  G VD A+  FE++   G A  V+    L+Q  GKA 
Sbjct: 245 MRAAG-VEPDGFTASTVIAAAGRDGLVDEAVAFFEDLKARGHAPCVVTYNALLQVFGKAG 303

Query: 483 RIDDLVRVFGVSIDRGVKPD 502
              + +RV     D G KPD
Sbjct: 304 NYTEALRVLREMEDAGCKPD 323



 Score = 45.1 bits (105), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 80/186 (43%), Gaps = 16/186 (8%)

Query: 203 FQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERM---------YKTGL 253
           F+ IEQL        +  D ITY++++    + N   EA +   R+          +  L
Sbjct: 627 FESIEQLG-------LSPDLITYNSLMDMYAKSNEPWEAEKILNRLRSSQSQQQQQQQQL 679

Query: 254 MPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRY 313
            PD V+Y+ +++ + K G ++E   +    +A G  P  I +  L   +     +   R 
Sbjct: 680 KPDVVSYNTVINGFCKEGLIKEAQRVLSEMIADGVAPCVITYHTLVGGYASREMFAEARE 739

Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYG 373
           V+  M    ++P  + Y  ++++  +A +   AR     + E+    DEK L AL     
Sbjct: 740 VVGYMIQRKLKPMELTYRRVVDSYCRAKRYEDARDFLAVVAEADTNSDEKLLGALTARIE 799

Query: 374 KARWAK 379
            A++ +
Sbjct: 800 SAQFGR 805


>gi|449518511|ref|XP_004166285.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Cucumis sativus]
          Length = 868

 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 133/555 (23%), Positives = 249/555 (44%), Gaps = 49/555 (8%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + I YN  +     G  ++    L NEM+   I+ D  TY+T++    +    D A E  
Sbjct: 292 DRITYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMDLAYEIM 351

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
             M    ++P+ VTYS + D YAK+G++E+ L+LY      G   D ++++ L  ++ + 
Sbjct: 352 LEMPGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKL 411

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G ++    V +EM S GV+ ++V YN LL+  GK GK      +F EM +  + P+  T 
Sbjct: 412 GRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTY 471

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
           + LI +Y K    ++A+E++   ++     D +LY+ L+N     GLV+ A  L ++M  
Sbjct: 472 STLIDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELINALCKNGLVDSAVLLLDEMT- 530

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIE----------------LFEEMSELGVAINVM 469
            +  +P+  +Y ++++ +G     +  ++                L E + E  +  +  
Sbjct: 531 KEGIRPNVVTYNSIIDAFGRSTTAEFLVDGVGASNERQSESPTFMLIEGVDESEINWDDG 590

Query: 470 GCTCLIQCL-----GKARR-------IDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCE 517
                 Q L     G A++       I  ++ VF    +  +KP+      +L+  S C+
Sbjct: 591 HVFKFYQQLVSEKEGPAKKERLGKEEIRSILSVFKKMHELEIKPNVVTFSAILNACSRCK 650

Query: 518 TSEDVGKVITCLQQANPKLVAFLNLIEDNSTGF-ENI---KEEFRNVIKDTEVDARRPFC 573
           + ED   ++  L+  + ++    + +     GF EN+    +   + +K  +      F 
Sbjct: 651 SIEDASMLLEELRLFDNQVYGVAHGL---LMGFSENVWIQAQYLFDEVKQMDSSTASAFY 707

Query: 574 NCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWS---LDVRSLSVGAAQTALE 630
           N L D+  +      A  ++  G    ++  L       WS   LD+  +S GAA+  + 
Sbjct: 708 NALTDMLWHFGQKRGAQLVVLEGKRRKVWETL-------WSDSCLDLHLMSSGAARAMVH 760

Query: 631 EWMWTLAKIVLREEVLPQLFLAETGTGTHKFSQG---LATAFASHVNKLAAPFRQSEGKA 687
            W+  +  +V     LP+L    TG G H    G   L  A  + +  + APFR ++   
Sbjct: 761 AWLLGIHSVVFEGHQLPKLLSILTGWGKHSKVVGDGALRRAIEALLTSMGAPFRVAKCNI 820

Query: 688 GCFVATREDLVSWVQ 702
           G +V+T   + +W++
Sbjct: 821 GRYVSTGSVVAAWLK 835



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 141/281 (50%), Gaps = 2/281 (0%)

Query: 223 ITYSTII-TCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYE 281
           +TY+ +I  C K    F   +E FE M + G+ PD +TY+++L V ++ G  E   +L+ 
Sbjct: 258 VTYNAVIDACGKGGVEFKRVVEIFEEMLRNGVQPDRITYNSLLAVCSRGGLWEAARNLFN 317

Query: 282 RGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG 341
             +  G   D   ++ L     + G  D    ++ EM    + PN+V Y+T+ +   KAG
Sbjct: 318 EMIDRGIDQDVFTYNTLLDAVCKGGQMDLAYEIMLEMPGKKILPNVVTYSTMADGYAKAG 377

Query: 342 KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYN 401
           +   A +L++EM   G+  D  +   L+ IY K    +DAL++ + M  +    D + YN
Sbjct: 378 RLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYN 437

Query: 402 TLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461
            LL+     G   E  R+F++MK  D   P+  +Y+ ++++Y  G   + A+E+F E  +
Sbjct: 438 ALLDGYGKQGKFNEVTRVFKEMK-KDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFREFKQ 496

Query: 462 LGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            G+  +V+  + LI  L K   +D  V +       G++P+
Sbjct: 497 AGLKADVVLYSELINALCKNGLVDSAVLLLDEMTKEGIRPN 537



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 106/392 (27%), Positives = 181/392 (46%), Gaps = 16/392 (4%)

Query: 231 CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
           C K    FD A+    R  + G +      SA++    + GKVE    ++E  ++ G+  
Sbjct: 166 CWKAIRCFDFALVREGRKNERGKLA-----SAMISTLGRLGKVELAKGVFETALSEGYGN 220

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG-KPGLARSL 349
              AFS L   +G+SG +D    V + MK  G++PNLV YN +++A GK G +      +
Sbjct: 221 TVFAFSALISAYGKSGYFDEAIKVFESMKVSGLKPNLVTYNAVIDACGKGGVEFKRVVEI 280

Query: 350 FDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCAD 409
           F+EM+ +G+ PD  T  +L+ +  +    + A  L+  M +     D   YNTLL+    
Sbjct: 281 FEEMLRNGVQPDRITYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCK 340

Query: 410 IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVM 469
            G ++ A  +  +M       P+  +Y+ M + Y   G +++A+ L+ EM  LG+ ++ +
Sbjct: 341 GGQMDLAYEIMLEMP-GKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRV 399

Query: 470 GCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCL 529
               L+    K  R +D ++V       GVK D      LL          +V +V   +
Sbjct: 400 SYNTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEM 459

Query: 530 QQAN--PKLVAFLNLIEDNSTG--FENIKEEFRNVIKDTEVDARRPFCNCLID-ICRNRN 584
           ++    P L+ +  LI+  S G  +E   E FR   K   + A     + LI+ +C+N  
Sbjct: 460 KKDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFRE-FKQAGLKADVVLYSELINALCKN-G 517

Query: 585 LNERAHELLYLGTLYGLYPGL--HNKTLDEWS 614
           L + A  LL   T  G+ P +  +N  +D + 
Sbjct: 518 LVDSAVLLLDEMTKEGIRPNVVTYNSIIDAFG 549



 Score = 87.0 bits (214), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 141/305 (46%), Gaps = 50/305 (16%)

Query: 155 ENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMK-SLRFGRQFQLIEQLANEM 213
           E+AL + N +KF                  ++ + YN  +    + GR F+   ++  EM
Sbjct: 380 EDALNLYNEMKFLG--------------IGLDRVSYNTLLSIYAKLGR-FEDALKVCKEM 424

Query: 214 VSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKV 273
            S+ ++ D +TY+ ++    +   F+E    F+ M K  + P+ +TYS ++DVY+K    
Sbjct: 425 GSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTYSTLIDVYSKGSLY 484

Query: 274 EEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTL 333
           EE + ++     +G K D + +S L     ++G  D    +L EM   G++PN+V YN++
Sbjct: 485 EEAMEVFREFKQAGLKADVVLYSELINALCKNGLVDSAVLLLDEMTKEGIRPNVVTYNSI 544

Query: 334 LEAMGKAGKP-----GLARS-----------LFDEMVESGLTPDEKTLTALIKIY----- 372
           ++A G++        G+  S           L + + ES +  D+     + K Y     
Sbjct: 545 IDAFGRSTTAEFLVDGVGASNERQSESPTFMLIEGVDESEINWDD---GHVFKFYQQLVS 601

Query: 373 ------GKARWAKDA----LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED 422
                  K R  K+     L ++++M E +   + + ++ +LN C+    +E+A  L E+
Sbjct: 602 EKEGPAKKERLGKEEIRSILSVFKKMHELEIKPNVVTFSAILNACSRCKSIEDASMLLEE 661

Query: 423 MKLSD 427
           ++L D
Sbjct: 662 LRLFD 666


>gi|449436409|ref|XP_004135985.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Cucumis sativus]
          Length = 868

 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 133/555 (23%), Positives = 249/555 (44%), Gaps = 49/555 (8%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + I YN  +     G  ++    L NEM+   I+ D  TY+T++    +    D A E  
Sbjct: 292 DRITYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMDLAYEIM 351

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
             M    ++P+ VTYS + D YAK+G++E+ L+LY      G   D ++++ L  ++ + 
Sbjct: 352 LEMPGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKL 411

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G ++    V +EM S GV+ ++V YN LL+  GK GK      +F EM +  + P+  T 
Sbjct: 412 GRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTY 471

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
           + LI +Y K    ++A+E++   ++     D +LY+ L+N     GLV+ A  L ++M  
Sbjct: 472 STLIDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELINALCKNGLVDSAVLLLDEMT- 530

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIE----------------LFEEMSELGVAINVM 469
            +  +P+  +Y ++++ +G     +  ++                L E + E  +  +  
Sbjct: 531 KEGIRPNVVTYNSIIDAFGRSTTAEFLVDGVGASNERQSESPSFMLIEGVDESEINWDDG 590

Query: 470 GCTCLIQCL-----GKARR-------IDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCE 517
                 Q L     G A++       I  ++ VF    +  +KP+      +L+  S C+
Sbjct: 591 HVFKFYQQLVSEKEGPAKKERLGKEEIRSILSVFKKMHELEIKPNVVTFSAILNACSRCK 650

Query: 518 TSEDVGKVITCLQQANPKLVAFLNLIEDNSTGF-ENI---KEEFRNVIKDTEVDARRPFC 573
           + ED   ++  L+  + ++    + +     GF EN+    +   + +K  +      F 
Sbjct: 651 SIEDASMLLEELRLFDNQVYGVAHGL---LMGFSENVWIQAQYLFDEVKQMDSSTASAFY 707

Query: 574 NCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWS---LDVRSLSVGAAQTALE 630
           N L D+  +      A  ++  G    ++  L       WS   LD+  +S GAA+  + 
Sbjct: 708 NALTDMLWHFGQKRGAQLVVLEGKRRKVWETL-------WSDSCLDLHLMSSGAARAMVH 760

Query: 631 EWMWTLAKIVLREEVLPQLFLAETGTGTHKFSQG---LATAFASHVNKLAAPFRQSEGKA 687
            W+  +  +V     LP+L    TG G H    G   L  A  + +  + APFR ++   
Sbjct: 761 AWLLGIHSVVFEGHQLPKLLSILTGWGKHSKVVGDGALRRAIEALLTSMGAPFRVAKCNI 820

Query: 688 GCFVATREDLVSWVQ 702
           G +V+T   + +W++
Sbjct: 821 GRYVSTGSVVAAWLK 835



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 141/281 (50%), Gaps = 2/281 (0%)

Query: 223 ITYSTII-TCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYE 281
           +TY+ +I  C K    F   +E FE M + G+ PD +TY+++L V ++ G  E   +L+ 
Sbjct: 258 VTYNAVIDACGKGGVEFKRVVEIFEEMLRNGVQPDRITYNSLLAVCSRGGLWEAARNLFN 317

Query: 282 RGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG 341
             +  G   D   ++ L     + G  D    ++ EM    + PN+V Y+T+ +   KAG
Sbjct: 318 EMIDRGIDQDVFTYNTLLDAVCKGGQMDLAYEIMLEMPGKKILPNVVTYSTMADGYAKAG 377

Query: 342 KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYN 401
           +   A +L++EM   G+  D  +   L+ IY K    +DAL++ + M  +    D + YN
Sbjct: 378 RLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYN 437

Query: 402 TLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461
            LL+     G   E  R+F++MK  D   P+  +Y+ ++++Y  G   + A+E+F E  +
Sbjct: 438 ALLDGYGKQGKFNEVTRVFKEMK-KDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFREFKQ 496

Query: 462 LGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            G+  +V+  + LI  L K   +D  V +       G++P+
Sbjct: 497 AGLKADVVLYSELINALCKNGLVDSAVLLLDEMTKEGIRPN 537



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 106/392 (27%), Positives = 181/392 (46%), Gaps = 16/392 (4%)

Query: 231 CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
           C K    FD A+    R  + G +      SA++    + GKVE    ++E  ++ G+  
Sbjct: 166 CWKAIRCFDFALVREGRKNERGKLA-----SAMISTLGRLGKVELAKGVFETALSEGYGN 220

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG-KPGLARSL 349
              AFS L   +G+SG +D    V + MK  G++PNLV YN +++A GK G +      +
Sbjct: 221 TVFAFSALISAYGKSGYFDEAIKVFESMKVSGLKPNLVTYNAVIDACGKGGVEFKRVVEI 280

Query: 350 FDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCAD 409
           F+EM+ +G+ PD  T  +L+ +  +    + A  L+  M +     D   YNTLL+    
Sbjct: 281 FEEMLRNGVQPDRITYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCK 340

Query: 410 IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVM 469
            G ++ A  +  +M       P+  +Y+ M + Y   G +++A+ L+ EM  LG+ ++ +
Sbjct: 341 GGQMDLAYEIMLEMP-GKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRV 399

Query: 470 GCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCL 529
               L+    K  R +D ++V       GVK D      LL          +V +V   +
Sbjct: 400 SYNTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEM 459

Query: 530 QQAN--PKLVAFLNLIEDNSTG--FENIKEEFRNVIKDTEVDARRPFCNCLID-ICRNRN 584
           ++    P L+ +  LI+  S G  +E   E FR   K   + A     + LI+ +C+N  
Sbjct: 460 KKDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFRE-FKQAGLKADVVLYSELINALCKN-G 517

Query: 585 LNERAHELLYLGTLYGLYPGL--HNKTLDEWS 614
           L + A  LL   T  G+ P +  +N  +D + 
Sbjct: 518 LVDSAVLLLDEMTKEGIRPNVVTYNSIIDAFG 549



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 141/305 (46%), Gaps = 50/305 (16%)

Query: 155 ENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMK-SLRFGRQFQLIEQLANEM 213
           E+AL + N +KF                  ++ + YN  +    + GR F+   ++  EM
Sbjct: 380 EDALNLYNEMKFLG--------------IGLDRVSYNTLLSIYAKLGR-FEDALKVCKEM 424

Query: 214 VSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKV 273
            S+ ++ D +TY+ ++    +   F+E    F+ M K  + P+ +TYS ++DVY+K    
Sbjct: 425 GSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTYSTLIDVYSKGSLY 484

Query: 274 EEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTL 333
           EE + ++     +G K D + +S L     ++G  D    +L EM   G++PN+V YN++
Sbjct: 485 EEAMEVFREFKQAGLKADVVLYSELINALCKNGLVDSAVLLLDEMTKEGIRPNVVTYNSI 544

Query: 334 LEAMGKAGKP-----GLARS-----------LFDEMVESGLTPDEKTLTALIKIY----- 372
           ++A G++        G+  S           L + + ES +  D+     + K Y     
Sbjct: 545 IDAFGRSTTAEFLVDGVGASNERQSESPSFMLIEGVDESEINWDD---GHVFKFYQQLVS 601

Query: 373 ------GKARWAKDA----LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED 422
                  K R  K+     L ++++M E +   + + ++ +LN C+    +E+A  L E+
Sbjct: 602 EKEGPAKKERLGKEEIRSILSVFKKMHELEIKPNVVTFSAILNACSRCKSIEDASMLLEE 661

Query: 423 MKLSD 427
           ++L D
Sbjct: 662 LRLFD 666


>gi|110740599|dbj|BAE98404.1| hypothetical protein [Arabidopsis thaliana]
          Length = 546

 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 96/344 (27%), Positives = 170/344 (49%), Gaps = 1/344 (0%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           WQ+S    +W+  +  +      YNV ++++   +QF +   L +EM    +  D  TYS
Sbjct: 3   WQRSLALLDWVHEEAKYTPSVFAYNVVLRNVLRAKQFDIAHGLFDEMRQRALAPDRYTYS 62

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T+IT   +  +FD A+ W ++M +  +  D V YS ++++  +     + +S++ R   S
Sbjct: 63  TLITSFGKEGMFDSALSWLQKMEQDRVSGDLVLYSNLIELSRRLCDYSKAISIFSRLKRS 122

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G  PD +A++ +  ++G++  +   R +++EM   GV PN V Y+TLL    +  K   A
Sbjct: 123 GITPDLVAYNSMINVYGKAKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLEA 182

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            S+F EM E     D  T   +I +YG+    K+A  L+  +R+     + + YNT+L +
Sbjct: 183 LSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYNTILRV 242

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
             +  L  EA  LF  M+  D  + +  +Y  M+ IYG     + A  L +EM   G+  
Sbjct: 243 YGEAELFGEAIHLFRLMQRKD-IEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEP 301

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
           N +  + +I   GKA ++D    +F      GV+ D  L   ++
Sbjct: 302 NAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMI 345



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 93/407 (22%), Positives = 188/407 (46%), Gaps = 10/407 (2%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K   + P + + YN  +      + F+    L  EM    +  + ++YS
Sbjct: 109 YSKAISIFSRLKRSGITP-DLVAYNSMINVYGKAKLFREARLLIKEMNEAGVLPNTVSYS 167

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T+++     + F EA+  F  M +     D  T + ++DVY +   V+E   L+      
Sbjct: 168 TLLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSLRKM 227

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
             +P+ ++++ + +++GE+  +    ++ + M+   ++ N+V YNT+++  GK  +   A
Sbjct: 228 DIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKA 287

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GKA     A  L++++R +   +D +LY T++  
Sbjct: 288 TNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVA 347

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
              +GL+  A+RL  ++KL     PDN      + I    G  + A  +F +  E G   
Sbjct: 348 YERVGLMGHAKRLLHELKL-----PDNIPRETAITILAKAGRTEEATWVFRQAFESGEVK 402

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           ++    C+I    + +R  +++ VF      G  PD  +   +L+        E    V 
Sbjct: 403 DISVFGCMINLYSRNQRYVNVIEVFEKMRTAGYFPDSNVIAMVLNAYGKQREFEKADTVY 462

Query: 527 TCLQQAN---PKLVAFLNL-IEDNSTGFENIKEEFRNVIKDTEVDAR 569
             +Q+     P  V F  L +  +   FE ++  F+ +  D  V+++
Sbjct: 463 REMQEEGCVFPDEVHFQMLSLYSSKKDFEMVESLFQRLESDPNVNSK 509



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 136/290 (46%), Gaps = 1/290 (0%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
             Y+ ++    R   FD A   F+ M +  L PD  TYS ++  + K G  +  LS  ++
Sbjct: 24  FAYNVVLRNVLRAKQFDIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFDSALSWLQK 83

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
                   D + +S L ++     DY     +   +K  G+ P+LV YN+++   GKA  
Sbjct: 84  MEQDRVSGDLVLYSNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINVYGKAKL 143

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
              AR L  EM E+G+ P+  + + L+ +Y +     +AL ++  M+E    +D    N 
Sbjct: 144 FREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNI 203

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
           ++++   + +V+EA+RLF  ++  D  +P+  SY  +L +YG       AI LF  M   
Sbjct: 204 MIDVYGQLDMVKEADRLFWSLRKMD-IEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRK 262

Query: 463 GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSV 512
            +  NV+    +I+  GK    +    +      RG++P+      ++S+
Sbjct: 263 DIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISI 312



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/318 (23%), Positives = 147/318 (46%), Gaps = 35/318 (11%)

Query: 217 EIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV 276
           +IE + ++Y+TI+       LF EAI  F  M +  +  + VTY+ ++ +Y K+ + E+ 
Sbjct: 228 DIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKA 287

Query: 277 LSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA 336
            +L +   + G +P+ I +S +  ++G++G  D    + Q+++S GV+ + V+Y T++ A
Sbjct: 288 TNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVA 347

Query: 337 MGKAGKPGLARSLFDEM-------------------------------VESGLTPDEKTL 365
             + G  G A+ L  E+                                ESG   D    
Sbjct: 348 YERVGLMGHAKRLLHELKLPDNIPRETAITILAKAGRTEEATWVFRQAFESGEVKDISVF 407

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
             +I +Y + +   + +E++E+MR   +  D  +   +LN        E+A+ ++ +M+ 
Sbjct: 408 GCMINLYSRNQRYVNVIEVFEKMRTAGYFPDSNVIAMVLNAYGKQREFEKADTVYREMQE 467

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL-GKARRI 484
                PD   +  ML++Y S  + +    LF+ + E    +N      ++  L  +A ++
Sbjct: 468 EGCVFPDEVHFQ-MLSLYSSKKDFEMVESLFQRL-ESDPNVNSKELHLVVAALYERADKL 525

Query: 485 DDLVRVFGVSIDRGV-KP 501
           +D  RV     +RG+ KP
Sbjct: 526 NDASRVMNRMRERGILKP 543



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 104/217 (47%), Gaps = 3/217 (1%)

Query: 325 PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384
           P++  YN +L  + +A +  +A  LFDEM +  L PD  T + LI  +GK      AL  
Sbjct: 21  PSVFAYNVVLRNVLRAKQFDIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFDSALSW 80

Query: 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYG 444
            ++M +++   D +LY+ L+ +   +    +A  +F  +K S    PD  +Y +M+N+YG
Sbjct: 81  LQKMEQDRVSGDLVLYSNLIELSRRLCDYSKAISIFSRLKRSG-ITPDLVAYNSMINVYG 139

Query: 445 SGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR 504
                  A  L +EM+E GV  N +  + L+    +  +  + + VF    +     D  
Sbjct: 140 KAKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCALDLT 199

Query: 505 LCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAF 539
            C  ++ V    +  ++  ++   L++ +  P +V++
Sbjct: 200 TCNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSY 236



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/253 (22%), Positives = 105/253 (41%), Gaps = 33/253 (13%)

Query: 142 LRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGR 201
           LR +   P+  +    L +    + + ++   F  ++ +++     + YN  +K      
Sbjct: 224 LRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDI-EQNVVTYNTMIKIYGKTM 282

Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS 261
           + +    L  EM S  IE + ITYSTII+   +    D A   F+++  +G+  D+V Y 
Sbjct: 283 EHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQ 342

Query: 262 AILDVY-------------------------------AKSGKVEEVLSLYERGVASGWKP 290
            ++  Y                               AK+G+ EE   ++ +   SG   
Sbjct: 343 TMIVAYERVGLMGHAKRLLHELKLPDNIPRETAITILAKAGRTEEATWVFRQAFESGEVK 402

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
           D   F  +  ++  +  Y  +  V ++M++ G  P+  V   +L A GK  +   A +++
Sbjct: 403 DISVFGCMINLYSRNQRYVNVIEVFEKMRTAGYFPDSNVIAMVLNAYGKQREFEKADTVY 462

Query: 351 DEMVESG-LTPDE 362
            EM E G + PDE
Sbjct: 463 REMQEEGCVFPDE 475


>gi|125559009|gb|EAZ04545.1| hypothetical protein OsI_26694 [Oryza sativa Indica Group]
          Length = 784

 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 89/324 (27%), Positives = 172/324 (53%), Gaps = 2/324 (0%)

Query: 188 IFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
           + YNV +    +    ++ + +L   M  + +  D  TY+T+I+C +R  L+ EA + F+
Sbjct: 208 VTYNVVLHVYSKMAVPWKEVVELVASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFD 267

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
            M  +G  PD+VT++++LDVY K+ + +E + + +     G  P  + ++ L   + + G
Sbjct: 268 EMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDG 327

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
             +    + QEM+  G++P++V Y TL+  + +AGK   A   +DEMV +G  P+  T  
Sbjct: 328 LLEQAVALKQEMEVKGIKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYN 387

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
           ALIK++G      + + +++ +R   +  D + +NTLL +    GL  E   +F++MK +
Sbjct: 388 ALIKMHGVRGKFPEMMAVFDELRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKA 447

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
            Y  P+  +Y ++++ Y   G  D A+++++ M E G+  +V     ++  L +  R + 
Sbjct: 448 GYI-PERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQ 506

Query: 487 LVRVFGVSIDRGVKPDDRLCGCLL 510
             ++F    +R  KPD+     LL
Sbjct: 507 AEKLFAEMEERDCKPDEYSYSSLL 530



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 140/281 (49%), Gaps = 1/281 (0%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           TY ++I+   RC LFD A++ ++RM + G+ PD  TY+A+L   A+ G+ E+   L+   
Sbjct: 455 TYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEM 514

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
                KPD  ++S L   +  +   D ++ +  ++ S  ++P+  +  TL+    K    
Sbjct: 515 EERDCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNL 574

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
             A   F E+ +   + D   L A++ IYGK R  +   ++   M+E+   +    YN+L
Sbjct: 575 AEAEKAFLELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSL 634

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           ++M + +G  E+ E +  ++K S   +PD YSY  ++  YG  G +  A  LF EM   G
Sbjct: 635 MHMYSRLGDCEKCENILTEIK-SSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSG 693

Query: 464 VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR 504
           +  +V+     ++        ++ + +    + +G KP++R
Sbjct: 694 LKPDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNER 734



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 149/296 (50%), Gaps = 4/296 (1%)

Query: 255 PDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG-DYDGIRY 313
           PD   Y+A++  ++++G+  + ++++ R V SG +P  + ++V+  ++ +    +  +  
Sbjct: 170 PDAGAYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKEVVE 229

Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYG 373
           ++  MK  GV P+   YNTL+    +      A  +FDEM  SG  PD+ T  +L+ +YG
Sbjct: 230 LVASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYG 289

Query: 374 KARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDN 433
           KAR   +A+E+ + M     P   + YN+L++     GL+E+A  L ++M++    KPD 
Sbjct: 290 KARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKG-IKPDV 348

Query: 434 YSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGV 493
            +YT +++     G +D AI  ++EM   G   N+     LI+  G   +  +++ VF  
Sbjct: 349 VTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFDE 408

Query: 494 SIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAFLNLIEDNS 547
               G  PD      LL+V        +V  V   +++A   P+   +++LI   S
Sbjct: 409 LRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYS 464



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 131/276 (47%), Gaps = 36/276 (13%)

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           P   + YN  + S       +    L  EM    I+ D +TY+T+I+   R    D AI 
Sbjct: 310 PPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGIKPDVVTYTTLISGLDRAGKIDAAIV 369

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
            ++ M + G  P+  TY+A++ ++   GK  E++++++   ++G+ PD + ++ L  +FG
Sbjct: 370 EYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFDELRSAGFVPDIVTWNTLLAVFG 429

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
           ++G    +  V +EMK  G  P    Y +L+ +  + G   LA  ++  M+E+G+ PD  
Sbjct: 430 QNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVS 489

Query: 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
           T                                   YN +L+  A  G  E+AE+LF +M
Sbjct: 490 T-----------------------------------YNAVLSALARGGRWEQAEKLFAEM 514

Query: 424 KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           +  D CKPD YSY+++L+ Y +   +D    L +++
Sbjct: 515 EERD-CKPDEYSYSSLLHAYANAKRLDKMKALSDDI 549



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 113/259 (43%), Gaps = 44/259 (16%)

Query: 282 RGVASGWKPDPIAFSVLGKMF--GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
           R + SG  P P   +V+G +   G+ G      +  +E+   GV  +  V  T +  M +
Sbjct: 95  RDLLSGL-PAPELAAVVGALGSRGQPGAALAALHAARELHGEGVLHHPRVLATAIRVMAR 153

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER------------ 387
           AG+   A +L D    +   PD    TAL+  + +A   +DA+ ++ R            
Sbjct: 154 AGRLAEASALLD----AAPGPDAGAYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVT 209

Query: 388 ------------------------MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
                                   M+E+    D   YNTL++ C    L +EA ++F++M
Sbjct: 210 YNVVLHVYSKMAVPWKEVVELVASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEM 269

Query: 424 KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483
           K S + +PD  ++ ++L++YG     D AIE+ +EM  +G   +V+    LI    K   
Sbjct: 270 KASGF-EPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGL 328

Query: 484 IDDLVRVFGVSIDRGVKPD 502
           ++  V +      +G+KPD
Sbjct: 329 LEQAVALKQEMEVKGIKPD 347



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 108/225 (48%), Gaps = 7/225 (3%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           W+++   F  ++ ++  P E   Y+  + +    ++   ++ L++++ S  IE  N    
Sbjct: 504 WEQAEKLFAEMEERDCKPDE-YSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVK 562

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG---KVEEVLSLYERG 283
           T++    + N   EA + F  + +     D    +A++ +Y K+    KVE++LSL +  
Sbjct: 563 TLVLVNSKVNNLAEAEKAFLELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKE- 621

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
             S        ++ L  M+   GD +    +L E+KS GV+P+   YNT++ A G+ G+ 
Sbjct: 622 --SAINLSAATYNSLMHMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQM 679

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
             A  LF EM  SGL PD  T    +K Y      ++A+EL   M
Sbjct: 680 KEASRLFSEMKCSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRYM 724



 Score = 48.1 bits (113), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 47/100 (47%)

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
           E +  E+ S+ +  D  +Y+T+I    R     EA   F  M  +GL PD VTY+  +  
Sbjct: 648 ENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKS 707

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
           Y  +   EE + L    V  G KP+   ++ + + +  +G
Sbjct: 708 YVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCRNG 747


>gi|242093812|ref|XP_002437396.1| hypothetical protein SORBIDRAFT_10g026180 [Sorghum bicolor]
 gi|241915619|gb|EER88763.1| hypothetical protein SORBIDRAFT_10g026180 [Sorghum bicolor]
          Length = 786

 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 104/370 (28%), Positives = 174/370 (47%), Gaps = 12/370 (3%)

Query: 142 LRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSL-RFG 200
           +RA T + H  +R            ++++   F  ++ Q + P   + YNV +    R G
Sbjct: 173 VRAYTTVLHALSRAGR---------YERAVELFAELRRQGVAPT-LVTYNVVLDVYGRMG 222

Query: 201 RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTY 260
           R +  I  L +EM +  +E D+ T ST+I    R  L DEA+ +FE +   G  P  VTY
Sbjct: 223 RSWPRIVALLDEMRAAGVEPDDFTASTVIAACCRDGLVDEAVAFFEDLKARGHTPCVVTY 282

Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
           +A+L V+ K+G   E L + +     G +PD + ++ L   +  +G Y+     L  M S
Sbjct: 283 NALLQVFGKAGNYTEALRVLKEMEQDGCQPDAVTYNELAGTYARAGFYEEAAKCLDTMTS 342

Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380
            G+ PN   YNT++ A G  GK   A +LFD+M +SG  P+  T   ++ + GK      
Sbjct: 343 KGLLPNAFTYNTVMTAYGNIGKVDEALALFDQMKKSGCVPNVNTYNFILGMLGKKSRFTV 402

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
            LE+   M  +    + + +NT+L +C   G+ +   R+ E MK S   +    +Y  ++
Sbjct: 403 MLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMK-SCGVELSRDTYNTLI 461

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
             YG  G+  NA +++ EM+  G A  +     L+  L +         +      +G K
Sbjct: 462 AAYGRCGSRTNAFKMYNEMTSAGFAPCLTTYNALLNVLSRQGDWSTAQSIVSKMRTKGFK 521

Query: 501 PDDRLCGCLL 510
           P+D+    LL
Sbjct: 522 PNDQSYSLLL 531



 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 82/285 (28%), Positives = 133/285 (46%), Gaps = 8/285 (2%)

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKV-EEVLS 278
           LD   Y+T++    R   ++ A+E F  + + G+ P  VTY+ +LDVY + G+    +++
Sbjct: 171 LDVRAYTTVLHALSRAGRYERAVELFAELRRQGVAPTLVTYNVVLDVYGRMGRSWPRIVA 230

Query: 279 LYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMG 338
           L +   A+G +PD    S +       G  D      +++K+ G  P +V YN LL+  G
Sbjct: 231 LLDEMRAAGVEPDDFTASTVIAACCRDGLVDEAVAFFEDLKARGHTPCVVTYNALLQVFG 290

Query: 339 KAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFI 398
           KAG    A  +  EM + G  PD  T   L   Y +A + ++A +  + M       +  
Sbjct: 291 KAGNYTEALRVLKEMEQDGCQPDAVTYNELAGTYARAGFYEEAAKCLDTMTSKGLLPNAF 350

Query: 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458
            YNT++    +IG V+EA  LF+ MK S  C P+  +Y  +L + G        +E+  E
Sbjct: 351 TYNTVMTAYGNIGKVDEALALFDQMKKSG-CVPNVNTYNFILGMLGKKSRFTVMLEMLGE 409

Query: 459 MSELGVAINVMGCTCLIQCLGKARRIDDLVRVF------GVSIDR 497
           MS  G   N +    ++   GK    D + RV       GV + R
Sbjct: 410 MSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMKSCGVELSR 454



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 135/296 (45%), Gaps = 1/296 (0%)

Query: 206 IEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
           + ++   M S  +EL   TY+T+I    RC     A + +  M   G  P   TY+A+L+
Sbjct: 438 VTRVLEGMKSCGVELSRDTYNTLIAAYGRCGSRTNAFKMYNEMTSAGFAPCLTTYNALLN 497

Query: 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325
           V ++ G      S+  +    G+KP+  ++S+L + + + G+  GI  + +E+    V P
Sbjct: 498 VLSRQGDWSTAQSIVSKMRTKGFKPNDQSYSLLLQCYAKGGNIAGIDAIEKEVYGGTVFP 557

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
           + V+  TL+ A  K  + G     F E+   G  PD     +++ +Y K        E++
Sbjct: 558 SWVILRTLVIANFKCRRLGGIEKAFQEVKARGYNPDLVIFNSMLSMYAKNGMYSKVTEIF 617

Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445
           + ++++    D I YN+L++M A      EAE++   +K S   KPD  SY  ++N +  
Sbjct: 618 DSIKQSGLSPDLITYNSLMDMYAKCSESWEAEKILNQLK-SSQVKPDVVSYNTVINGFCK 676

Query: 446 GGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
            G +  A  +  EM   G+A  V+    L+          +   V    I   +KP
Sbjct: 677 QGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFSEAREVINYMIQHNLKP 732



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 105/461 (22%), Positives = 193/461 (41%), Gaps = 79/461 (17%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLA--NEMVSNEIELDNITYSTIIT 230
           FF  +K++   P   + YN  ++   FG+     E L    EM  +  + D +TY+ +  
Sbjct: 266 FFEDLKARGHTPC-VVTYNALLQV--FGKAGNYTEALRVLKEMEQDGCQPDAVTYNELAG 322

Query: 231 CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
              R   ++EA +  + M   GL+P+  TY+ ++  Y   GKV+E L+L+++   SG  P
Sbjct: 323 TYARAGFYEEAAKCLDTMTSKGLLPNAFTYNTVMTAYGNIGKVDEALALFDQMKKSGCVP 382

Query: 291 D-----------------PIAFSVLGKM------------------FGESGDYDGIRYVL 315
           +                  +   +LG+M                   G+ G  D +  VL
Sbjct: 383 NVNTYNFILGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVL 442

Query: 316 QEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA 375
           + MKS GV+ +   YNTL+ A G+ G    A  +++EM  +G  P   T           
Sbjct: 443 EGMKSCGVELSRDTYNTLIAAYGRCGSRTNAFKMYNEMTSAGFAPCLTT----------- 491

Query: 376 RWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYS 435
                                   YN LLN+ +  G    A+ +   M+   + KP++ S
Sbjct: 492 ------------------------YNALLNVLSRQGDWSTAQSIVSKMRTKGF-KPNDQS 526

Query: 436 YTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSI 495
           Y+ +L  Y  GGN+     + +E+    V  + +    L+    K RR+  + + F    
Sbjct: 527 YSLLLQCYAKGGNIAGIDAIEKEVYGGTVFPSWVILRTLVIANFKCRRLGGIEKAFQEVK 586

Query: 496 DRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQA--NPKLVAFLNLIEDNSTGFENI 553
            RG  PD  +   +LS+ +       V ++   ++Q+  +P L+ + +L++  +   E+ 
Sbjct: 587 ARGYNPDLVIFNSMLSMYAKNGMYSKVTEIFDSIKQSGLSPDLITYNSLMDMYAKCSESW 646

Query: 554 K-EEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELL 593
           + E+  N +K ++V       N +I+    + L + A  +L
Sbjct: 647 EAEKILNQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRIL 687



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 137/319 (42%), Gaps = 40/319 (12%)

Query: 256 DEVTYSAILDVYAKSGKVEEVLSLY-ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYV 314
           D      ++    + G+ + V +L  E  +  G + D  A++ +      +G Y+    +
Sbjct: 136 DASALEMVVRALGREGQHDAVCALLDEMPLPPGSRLDVRAYTTVLHALSRAGRYERAVEL 195

Query: 315 LQEMKSLGVQPNLVVYNTLLEAMGKAGK--PGLARSLFDEMVESGLTPDEKTLT------ 366
             E++  GV P LV YN +L+  G+ G+  P +  +L DEM  +G+ PD+ T +      
Sbjct: 196 FAELRRQGVAPTLVTYNVVLDVYGRMGRSWPRIV-ALLDEMRAAGVEPDDFTASTVIAAC 254

Query: 367 -----------------------------ALIKIYGKARWAKDALELWERMRENKWPMDF 397
                                        AL++++GKA    +AL + + M ++    D 
Sbjct: 255 CRDGLVDEAVAFFEDLKARGHTPCVVTYNALLQVFGKAGNYTEALRVLKEMEQDGCQPDA 314

Query: 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE 457
           + YN L    A  G  EEA +  + M  S    P+ ++Y  ++  YG+ G VD A+ LF+
Sbjct: 315 VTYNELAGTYARAGFYEEAAKCLDTMT-SKGLLPNAFTYNTVMTAYGNIGKVDEALALFD 373

Query: 458 EMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCE 517
           +M + G   NV     ++  LGK  R   ++ + G     G  P+      +L+V     
Sbjct: 374 QMKKSGCVPNVNTYNFILGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRG 433

Query: 518 TSEDVGKVITCLQQANPKL 536
             + V +V+  ++    +L
Sbjct: 434 MEDYVTRVLEGMKSCGVEL 452



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/389 (19%), Positives = 163/389 (41%), Gaps = 4/389 (1%)

Query: 148 IPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIE 207
           +P+  T    +    ++    ++   F+ +K     P     YN  +  L    +F ++ 
Sbjct: 346 LPNAFTYNTVMTAYGNIGKVDEALALFDQMKKSGCVP-NVNTYNFILGMLGKKSRFTVML 404

Query: 208 QLANEMVSNEIELDNITYSTIIT-CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
           ++  EM  +    + +T++T++  C KR  + D      E M   G+     TY+ ++  
Sbjct: 405 EMLGEMSRSGCTPNRVTWNTMLAVCGKR-GMEDYVTRVLEGMKSCGVELSRDTYNTLIAA 463

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
           Y + G       +Y    ++G+ P    ++ L  +    GD+   + ++ +M++ G +PN
Sbjct: 464 YGRCGSRTNAFKMYNEMTSAGFAPCLTTYNALLNVLSRQGDWSTAQSIVSKMRTKGFKPN 523

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
              Y+ LL+   K G      ++  E+    + P    L  L+    K R      + ++
Sbjct: 524 DQSYSLLLQCYAKGGNIAGIDAIEKEVYGGTVFPSWVILRTLVIANFKCRRLGGIEKAFQ 583

Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
            ++   +  D +++N++L+M A  G+  +   +F+ +K S    PD  +Y +++++Y   
Sbjct: 584 EVKARGYNPDLVIFNSMLSMYAKNGMYSKVTEIFDSIKQSGL-SPDLITYNSLMDMYAKC 642

Query: 447 GNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLC 506
                A ++  ++    V  +V+    +I    K   I +  R+    I  G+ P     
Sbjct: 643 SESWEAEKILNQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTY 702

Query: 507 GCLLSVVSLCETSEDVGKVITCLQQANPK 535
             L+   +  E   +  +VI  + Q N K
Sbjct: 703 HTLVGGYASLEMFSEAREVINYMIQHNLK 731



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 62/277 (22%), Positives = 125/277 (45%), Gaps = 4/277 (1%)

Query: 153 TRENALL-ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLAN 211
           T  NALL +L+    W  +    + ++++   P +   Y++ ++    G     I+ +  
Sbjct: 490 TTYNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNDQS-YSLLLQCYAKGGNIAGIDAIEK 548

Query: 212 EMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG 271
           E+    +    +   T++    +C       + F+ +   G  PD V ++++L +YAK+G
Sbjct: 549 EVYGGTVFPSWVILRTLVIANFKCRRLGGIEKAFQEVKARGYNPDLVIFNSMLSMYAKNG 608

Query: 272 KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYN 331
              +V  +++    SG  PD I ++ L  M+ +  +      +L ++KS  V+P++V YN
Sbjct: 609 MYSKVTEIFDSIKQSGLSPDLITYNSLMDMYAKCSESWEAEKILNQLKSSQVKPDVVSYN 668

Query: 332 TLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM-RE 390
           T++    K G    A+ +  EM+  G+ P   T   L+  Y       +A E+   M + 
Sbjct: 669 TVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFSEAREVINYMIQH 728

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           N  PM+ + Y  +++        EEA     ++  +D
Sbjct: 729 NLKPME-LTYRRVVDSYCKAKRFEEARSFLSEVSETD 764



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 111/227 (48%), Gaps = 1/227 (0%)

Query: 177 IKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCN 236
           +    +FP   I   + + + +  R+   IE+   E+ +     D + ++++++   +  
Sbjct: 550 VYGGTVFPSWVILRTLVIANFKC-RRLGGIEKAFQEVKARGYNPDLVIFNSMLSMYAKNG 608

Query: 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS 296
           ++ +  E F+ + ++GL PD +TY++++D+YAK  +  E   +  +  +S  KPD ++++
Sbjct: 609 MYSKVTEIFDSIKQSGLSPDLITYNSLMDMYAKCSESWEAEKILNQLKSSQVKPDVVSYN 668

Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356
            +   F + G     + +L EM + G+ P +V Y+TL+           AR + + M++ 
Sbjct: 669 TVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFSEAREVINYMIQH 728

Query: 357 GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
            L P E T   ++  Y KA+  ++A      + E     D  + +TL
Sbjct: 729 NLKPMELTYRRVVDSYCKAKRFEEARSFLSEVSETDPNFDKKVLHTL 775



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 39/206 (18%), Positives = 94/206 (45%), Gaps = 1/206 (0%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           F  +K++   P + + +N  +        +  + ++ + +  + +  D ITY++++    
Sbjct: 582 FQEVKARGYNP-DLVIFNSMLSMYAKNGMYSKVTEIFDSIKQSGLSPDLITYNSLMDMYA 640

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
           +C+   EA +   ++  + + PD V+Y+ +++ + K G ++E   +    +A G  P  +
Sbjct: 641 KCSESWEAEKILNQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVV 700

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
            +  L   +     +   R V+  M    ++P  + Y  ++++  KA +   ARS   E+
Sbjct: 701 TYHTLVGGYASLEMFSEAREVINYMIQHNLKPMELTYRRVVDSYCKAKRFEEARSFLSEV 760

Query: 354 VESGLTPDEKTLTALIKIYGKARWAK 379
            E+    D+K L  L      A++ +
Sbjct: 761 SETDPNFDKKVLHTLAAYIEDAQFGR 786


>gi|224141335|ref|XP_002324029.1| predicted protein [Populus trichocarpa]
 gi|222867031|gb|EEF04162.1| predicted protein [Populus trichocarpa]
          Length = 629

 Score =  152 bits (383), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 97/344 (28%), Positives = 173/344 (50%), Gaps = 1/344 (0%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           WQ+S    +WI     +      YNV ++++   +Q+     L +EM +  +  D  TYS
Sbjct: 87  WQRSLALLDWINDIARYSPSVFAYNVVLRNVLRAKQWDHAHGLFDEMRNRALAPDRYTYS 146

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T+IT   +  +FD ++ W ++M +  +  D V YS ++++  K     + +S++ R   S
Sbjct: 147 TLITHFGKAGMFDASLFWLQQMEQDRVSGDLVLYSNLIELSRKLCDYSKAISIFMRLKRS 206

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G  PD +A++ +  +FG++  +   + +++EM+ +GV P+ V Y+TLL    +  K   A
Sbjct: 207 GIMPDLVAYNSMINVFGKAKLFREAKLLMKEMREVGVMPDTVSYSTLLSVYVENEKFVEA 266

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            S+F EM E+    D  T   +I +YG+   AK+A  L+  MR+     + + YNTLL +
Sbjct: 267 LSVFAEMNEAKCPLDLTTCNVMIDVYGQLDMAKEADRLFWSMRKMGIEPNVVSYNTLLRV 326

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
             +  L  EA  LF  M+  D  + +  +Y  M+ +YG     + A  L +EM   G+  
Sbjct: 327 YGETELFGEAIHLFRLMQKKD-IEQNVVTYNTMIKVYGKSLEHEKATNLMQEMQNRGIEP 385

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
           N +  + +I   GKA ++D    +F      GV+ D  L   ++
Sbjct: 386 NAITYSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTMI 429



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 164/345 (47%), Gaps = 6/345 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F  +K   + P + + YN  +      + F+  + L  EM    +  D ++YS
Sbjct: 193 YSKAISIFMRLKRSGIMP-DLVAYNSMINVFGKAKLFREAKLLMKEMREVGVMPDTVSYS 251

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T+++       F EA+  F  M +     D  T + ++DVY +    +E   L+      
Sbjct: 252 TLLSVYVENEKFVEALSVFAEMNEAKCPLDLTTCNVMIDVYGQLDMAKEADRLFWSMRKM 311

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++GE+  +    ++ + M+   ++ N+V YNT+++  GK+ +   A
Sbjct: 312 GIEPNVVSYNTLLRVYGETELFGEAIHLFRLMQKKDIEQNVVTYNTMIKVYGKSLEHEKA 371

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GKA     A  L++++R +   +D +LY T++  
Sbjct: 372 TNLMQEMQNRGIEPNAITYSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVA 431

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K      PD+      + I    G ++ A  +F +  + G   
Sbjct: 432 YERSGLVAHAKRLLHELK-----HPDSIPRETAIKILARAGRIEEATWVFRQAFDAGEVK 486

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
           ++    C++    + R+  +++ VF      G  PD  +   +L+
Sbjct: 487 DISVFGCMVDLFSRNRKPANVIEVFEKMRGAGYFPDSNVIALVLN 531



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 137/289 (47%), Gaps = 1/289 (0%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
            Y+ ++    R   +D A   F+ M    L PD  TYS ++  + K+G  +  L   ++ 
Sbjct: 109 AYNVVLRNVLRAKQWDHAHGLFDEMRNRALAPDRYTYSTLITHFGKAGMFDASLFWLQQM 168

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
                  D + +S L ++  +  DY     +   +K  G+ P+LV YN+++   GKA   
Sbjct: 169 EQDRVSGDLVLYSNLIELSRKLCDYSKAISIFMRLKRSGIMPDLVAYNSMINVFGKAKLF 228

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
             A+ L  EM E G+ PD  + + L+ +Y +     +AL ++  M E K P+D    N +
Sbjct: 229 REAKLLMKEMREVGVMPDTVSYSTLLSVYVENEKFVEALSVFAEMNEAKCPLDLTTCNVM 288

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           +++   + + +EA+RLF  M+     +P+  SY  +L +YG       AI LF  M +  
Sbjct: 289 IDVYGQLDMAKEADRLFWSMRKMG-IEPNVVSYNTLLRVYGETELFGEAIHLFRLMQKKD 347

Query: 464 VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSV 512
           +  NV+    +I+  GK+   +    +     +RG++P+      ++S+
Sbjct: 348 IEQNVVTYNTMIKVYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIISI 396



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 105/221 (47%), Gaps = 3/221 (1%)

Query: 325 PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384
           P++  YN +L  + +A +   A  LFDEM    L PD  T + LI  +GKA     +L  
Sbjct: 105 PSVFAYNVVLRNVLRAKQWDHAHGLFDEMRNRALAPDRYTYSTLITHFGKAGMFDASLFW 164

Query: 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYG 444
            ++M +++   D +LY+ L+ +   +    +A  +F  +K S    PD  +Y +M+N++G
Sbjct: 165 LQQMEQDRVSGDLVLYSNLIELSRKLCDYSKAISIFMRLKRSG-IMPDLVAYNSMINVFG 223

Query: 445 SGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR 504
                  A  L +EM E+GV  + +  + L+    +  +  + + VF    +     D  
Sbjct: 224 KAKLFREAKLLMKEMREVGVMPDTVSYSTLLSVYVENEKFVEALSVFAEMNEAKCPLDLT 283

Query: 505 LCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAFLNLI 543
            C  ++ V    + +++  ++   +++    P +V++  L+
Sbjct: 284 TCNVMIDVYGQLDMAKEADRLFWSMRKMGIEPNVVSYNTLL 324



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 63/278 (22%), Positives = 121/278 (43%), Gaps = 5/278 (1%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
            + YN  +K      + +    L  EM +  IE + ITYSTII+   +    D A   F+
Sbjct: 352 VVTYNTMIKVYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIISIWGKAGKLDRAAMLFQ 411

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
           ++  +G+  D+V Y  ++  Y +SG V       +R +     PD I      K+   +G
Sbjct: 412 KLRSSGVEIDQVLYQTMIVAYERSGLVAHA----KRLLHELKHPDSIPRETAIKILARAG 467

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
             +   +V ++    G   ++ V+  +++   +  KP     +F++M  +G  PD   + 
Sbjct: 468 RIEEATWVFRQAFDAGEVKDISVFGCMVDLFSRNRKPANVIEVFEKMRGAGYFPDSNVIA 527

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
            ++  YGK    + A  L++ M+E +      ++  +L++          E LFE +  S
Sbjct: 528 LVLNAYGKLHEFEKADALYKEMQEEECVFPDEVHFQMLSLYGARKDFMMIEALFERLD-S 586

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
           D        +  + +IY     +++A  +   MS+ GV
Sbjct: 587 DPNINKKELHLVVASIYERKNRLNDASRIMNRMSKGGV 624


>gi|449461223|ref|XP_004148341.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Cucumis sativus]
 gi|449507064|ref|XP_004162923.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Cucumis sativus]
          Length = 844

 Score =  151 bits (381), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 131/473 (27%), Positives = 221/473 (46%), Gaps = 25/473 (5%)

Query: 142 LRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSL-RFG 200
           +RA T I H  +R            ++++   F  +K   L P   + YNV +    + G
Sbjct: 232 VRACTTILHAYSRNGK---------YKQAIAMFERMKDCGLSP-SLVTYNVMLDVYGKMG 281

Query: 201 RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTY 260
           R +  I  L +EM +  ++ D  T ST+I+   R  L +EA E+F  +  +G  P  VTY
Sbjct: 282 RSWDKILDLLDEMRNEGLQFDEFTCSTVISACGREGLINEAKEFFVELKSSGYEPGTVTY 341

Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
           +A+L V+ K+G   E L++ +    +    D + ++ L   +  +G Y+    V+  M  
Sbjct: 342 NALLQVFGKAGIYSEALNILKEMEDNNCTLDSVTYNELVAAYVRAGFYEEGATVIDTMTR 401

Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380
            GV PN V Y T++ A G+AGK   A  LF++M +SG  P+  T  +++ + GK   +++
Sbjct: 402 KGVMPNAVTYTTVINAYGRAGKEVKALQLFNQMKKSGCVPNVCTYNSILALLGKKSRSEE 461

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
            +++   MR N  P + I +NTLL MC D G  +    +F +MK   + +P   ++  ++
Sbjct: 462 MIKILSDMRINGCPPNRITWNTLLAMCGDKGKHKFVNHVFREMKNCGF-EPGKDTFNTLI 520

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID---R 497
           + YG  G+  +A ++++EM + G          L+  L  ARR  D      V +D   +
Sbjct: 521 SAYGRCGSELDAAKMYDEMMKAGFTPCATTYNALLNAL--ARR-GDWKAAESVLLDMRNK 577

Query: 498 GVKPDDRLCGCLLSVVSL---CETSEDVGKVITCLQQANPKLVAFLNLIEDN--STGFEN 552
           G KP++     +L   +        E +GK I    Q  P  V    LI  N        
Sbjct: 578 GFKPNETSFSLMLHCYAKGGNVRGLERIGKDIY-DGQIFPSWVLLRTLILANFKCRAVRG 636

Query: 553 IKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGL 605
           ++  F  ++K+        F N ++ I    N+ ERA ++L L    GL P L
Sbjct: 637 MERAFEELMKNGYKPDMVIF-NSMLSIFAKNNMYERAQKMLDLIRESGLQPDL 688



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/434 (20%), Positives = 177/434 (40%), Gaps = 107/434 (24%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           FF  +KS    P  T+ YN  ++       +     +  EM  N   LD++TY+ ++   
Sbjct: 325 FFVELKSSGYEP-GTVTYNALLQVFGKAGIYSEALNILKEMEDNNCTLDSVTYNELVAAY 383

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            R   ++E     + M + G+MP+ VTY+ +++ Y ++GK  + L L+ +   SG  P+ 
Sbjct: 384 VRAGFYEEGATVIDTMTRKGVMPNAVTYTTVINAYGRAGKEVKALQLFNQMKKSGCVPNV 443

Query: 293 IAF----SVLGK-------------------------------MFGESGDYDGIRYVLQE 317
             +    ++LGK                               M G+ G +  + +V +E
Sbjct: 444 CTYNSILALLGKKSRSEEMIKILSDMRINGCPPNRITWNTLLAMCGDKGKHKFVNHVFRE 503

Query: 318 MKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT------------------ 359
           MK+ G +P    +NTL+ A G+ G    A  ++DEM+++G T                  
Sbjct: 504 MKNCGFEPGKDTFNTLISAYGRCGSELDAAKMYDEMMKAGFTPCATTYNALLNALARRGD 563

Query: 360 -----------------PDEKTLTALIKIYGKA-------RWAKDALE------------ 383
                            P+E + + ++  Y K        R  KD  +            
Sbjct: 564 WKAAESVLLDMRNKGFKPNETSFSLMLHCYAKGGNVRGLERIGKDIYDGQIFPSWVLLRT 623

Query: 384 ----------------LWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
                            +E + +N +  D +++N++L++ A   + E A+++ + ++ S 
Sbjct: 624 LILANFKCRAVRGMERAFEELMKNGYKPDMVIFNSMLSIFAKNNMYERAQKMLDLIRESG 683

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
             +PD  +Y +++N+Y   G    A E+ + + + G + +++    +I+   +   + + 
Sbjct: 684 L-QPDLVTYNSLMNMYARRGECWKAEEILKGLIKSGESPDLVSYNTIIKGFCRQGLMQEA 742

Query: 488 VRVFGVSIDRGVKP 501
           +RV      RG+ P
Sbjct: 743 IRVMSEMTTRGICP 756



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 108/212 (50%), Gaps = 9/212 (4%)

Query: 177 IKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCN 236
           I    +FP   +   + + + +  R  + +E+   E++ N  + D + ++++++   + N
Sbjct: 609 IYDGQIFPSWVLLRTLILANFKC-RAVRGMERAFEELMKNGYKPDMVIFNSMLSIFAKNN 667

Query: 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG---KVEEVLSLYERG-VASGWKPDP 292
           +++ A +  + + ++GL PD VTY++++++YA+ G   K EE+L    +G + SG  PD 
Sbjct: 668 MYERAQKMLDLIRESGLQPDLVTYNSLMNMYARRGECWKAEEIL----KGLIKSGESPDL 723

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           ++++ + K F   G       V+ EM + G+ P +  YNT +      G       +   
Sbjct: 724 VSYNTIIKGFCRQGLMQEAIRVMSEMTTRGICPCIFTYNTFVSGYAGRGMFAEVDEVISY 783

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALEL 384
           M++    P+E T   ++  Y KAR  +DA++ 
Sbjct: 784 MIQKNCKPNELTYKIIVDGYCKARKYQDAMDF 815



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 63/318 (19%), Positives = 130/318 (40%), Gaps = 37/318 (11%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           F  +K+    P +  F  +     R G +     ++ +EM+         TY+ ++    
Sbjct: 501 FREMKNCGFEPGKDTFNTLISAYGRCGSELD-AAKMYDEMMKAGFTPCATTYNALLNALA 559

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL-------------- 279
           R   +  A      M   G  P+E ++S +L  YAK G V  +  +              
Sbjct: 560 RRGDWKAAESVLLDMRNKGFKPNETSFSLMLHCYAKGGNVRGLERIGKDIYDGQIFPSWV 619

Query: 280 ---------------------YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEM 318
                                +E  + +G+KPD + F+ +  +F ++  Y+  + +L  +
Sbjct: 620 LLRTLILANFKCRAVRGMERAFEELMKNGYKPDMVIFNSMLSIFAKNNMYERAQKMLDLI 679

Query: 319 KSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWA 378
           +  G+QP+LV YN+L+    + G+   A  +   +++SG +PD  +   +IK + +    
Sbjct: 680 RESGLQPDLVTYNSLMNMYARRGECWKAEEILKGLIKSGESPDLVSYNTIIKGFCRQGLM 739

Query: 379 KDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTA 438
           ++A+ +   M           YNT ++  A  G+  E + +   M +   CKP+  +Y  
Sbjct: 740 QEAIRVMSEMTTRGICPCIFTYNTFVSGYAGRGMFAEVDEVISYM-IQKNCKPNELTYKI 798

Query: 439 MLNIYGSGGNVDNAIELF 456
           +++ Y       +A++  
Sbjct: 799 IVDGYCKARKYQDAMDFI 816



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 102/229 (44%), Gaps = 3/229 (1%)

Query: 153 TRENALL-ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLAN 211
           T  NALL  L     W+ +      ++++   P ET F ++ +     G   + +E++  
Sbjct: 549 TTYNALLNALARRGDWKAAESVLLDMRNKGFKPNETSF-SLMLHCYAKGGNVRGLERIGK 607

Query: 212 EMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG 271
           ++   +I    +   T+I    +C         FE + K G  PD V ++++L ++AK+ 
Sbjct: 608 DIYDGQIFPSWVLLRTLILANFKCRAVRGMERAFEELMKNGYKPDMVIFNSMLSIFAKNN 667

Query: 272 KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYN 331
             E    + +    SG +PD + ++ L  M+   G+      +L+ +   G  P+LV YN
Sbjct: 668 MYERAQKMLDLIRESGLQPDLVTYNSLMNMYARRGECWKAEEILKGLIKSGESPDLVSYN 727

Query: 332 TLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIY-GKARWAK 379
           T+++   + G    A  +  EM   G+ P   T    +  Y G+  +A+
Sbjct: 728 TIIKGFCRQGLMQEAIRVMSEMTTRGICPCIFTYNTFVSGYAGRGMFAE 776


>gi|125600921|gb|EAZ40497.1| hypothetical protein OsJ_24952 [Oryza sativa Japonica Group]
          Length = 766

 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 89/324 (27%), Positives = 171/324 (52%), Gaps = 2/324 (0%)

Query: 188 IFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
           + YNV +    +    ++ + +L   M  + +  D  TY+T+I+C +R  L+ EA + F+
Sbjct: 190 VTYNVVLHVYSKMAVPWKEVVELVASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFD 249

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
            M  +G  PD+VT++++LDVY K+ + +E + + +     G  P  + ++ L   + + G
Sbjct: 250 EMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDG 309

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
             +    + QEM+  G++P++V Y TL+  + +AGK   A   +DEMV +G  P+  T  
Sbjct: 310 LLEQAVALKQEMEVKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYN 369

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
           ALIK++G      + + +++  R   +  D + +NTLL +    GL  E   +F++MK +
Sbjct: 370 ALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKA 429

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
            Y  P+  +Y ++++ Y   G  D A+++++ M E G+  +V     ++  L +  R + 
Sbjct: 430 GYI-PERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQ 488

Query: 487 LVRVFGVSIDRGVKPDDRLCGCLL 510
             ++F    +R  KPD+     LL
Sbjct: 489 AEKLFAEMEERDCKPDEYSYSSLL 512



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 140/281 (49%), Gaps = 1/281 (0%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           TY ++I+   RC LFD A++ ++RM + G+ PD  TY+A+L   A+ G+ E+   L+   
Sbjct: 437 TYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEM 496

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
                KPD  ++S L   +  +   D ++ +  ++ S  ++P+  +  TL+    K    
Sbjct: 497 EERDCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNL 556

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
             A   F E+ +   + D   L A++ IYGK R  +   ++   M+E+   +    YN+L
Sbjct: 557 AEAEKAFLELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSL 616

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           ++M + +G  E+ E +  ++K S   +PD YSY  ++  YG  G +  A  LF EM   G
Sbjct: 617 MHMYSRLGDCEKCENILTEIK-SSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSG 675

Query: 464 VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR 504
           +  +V+     ++        ++ + +    + +G KP++R
Sbjct: 676 LKPDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNER 716



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 149/296 (50%), Gaps = 4/296 (1%)

Query: 255 PDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG-DYDGIRY 313
           PD   Y+A++  ++++G+  + ++++ R V SG +P  + ++V+  ++ +    +  +  
Sbjct: 152 PDAGAYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKEVVE 211

Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYG 373
           ++  MK  GV P+   YNTL+    +      A  +FDEM  SG  PD+ T  +L+ +YG
Sbjct: 212 LVASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYG 271

Query: 374 KARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDN 433
           KAR   +A+E+ + M     P   + YN+L++     GL+E+A  L ++M++    KPD 
Sbjct: 272 KARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKG-MKPDV 330

Query: 434 YSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGV 493
            +YT +++     G +D AI  ++EM   G   N+     LI+  G   +  +++ VF  
Sbjct: 331 VTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFDE 390

Query: 494 SIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAFLNLIEDNS 547
               G  PD      LL+V        +V  V   +++A   P+   +++LI   S
Sbjct: 391 FRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYS 446



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 131/276 (47%), Gaps = 36/276 (13%)

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           P   + YN  + S       +    L  EM    ++ D +TY+T+I+   R    D AI 
Sbjct: 292 PPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGMKPDVVTYTTLISGLDRAGKIDAAIV 351

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
            ++ M + G  P+  TY+A++ ++   GK  E++++++   ++G+ PD + ++ L  +FG
Sbjct: 352 EYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFG 411

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
           ++G    +  V +EMK  G  P    Y +L+ +  + G   LA  ++  M+E+G+ PD  
Sbjct: 412 QNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVS 471

Query: 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
           T                                   YN +L+  A  G  E+AE+LF +M
Sbjct: 472 T-----------------------------------YNAVLSALARGGRWEQAEKLFAEM 496

Query: 424 KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           +  D CKPD YSY+++L+ Y +   +D    L +++
Sbjct: 497 EERD-CKPDEYSYSSLLHAYANAKRLDKMKALSDDI 531



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 108/225 (48%), Gaps = 7/225 (3%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           W+++   F  ++ ++  P E   Y+  + +    ++   ++ L++++ S  IE  N    
Sbjct: 486 WEQAEKLFAEMEERDCKPDE-YSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVK 544

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG---KVEEVLSLYERG 283
           T++    + N   EA + F  + +     D    +A++ +Y K+    KVE++LSL +  
Sbjct: 545 TLVLVNSKVNNLAEAEKAFLELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKE- 603

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
             S        ++ L  M+   GD +    +L E+KS GV+P+   YNT++ A G+ G+ 
Sbjct: 604 --SAINLSAATYNSLMHMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQM 661

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
             A  LF EM  SGL PD  T    +K Y      ++A+EL   M
Sbjct: 662 KEASRLFSEMKCSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRYM 706



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 98/223 (43%), Gaps = 41/223 (18%)

Query: 316 QEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA 375
           +E+   GV  +  V  T +  M +AG+   A +L D    +   PD    TAL+  + +A
Sbjct: 112 RELHGEGVLHHPRVLATAIRVMARAGRLAEASALLD----AAPGPDAGAYTALVSAFSRA 167

Query: 376 RWAKDALELWER------------------------------------MRENKWPMDFIL 399
              +DA+ ++ R                                    M+E+    D   
Sbjct: 168 GRFRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKEVVELVASMKEHGVAPDRYT 227

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           YNTL++ C    L +EA ++F++MK S + +PD  ++ ++L++YG     D AIE+ +EM
Sbjct: 228 YNTLISCCRRRALYKEAAQVFDEMKASGF-EPDKVTFNSLLDVYGKARRHDEAIEVIQEM 286

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
             +G   +V+    LI    K   ++  V +      +G+KPD
Sbjct: 287 ERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGMKPD 329



 Score = 48.5 bits (114), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 47/100 (47%)

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
           E +  E+ S+ +  D  +Y+T+I    R     EA   F  M  +GL PD VTY+  +  
Sbjct: 630 ENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKS 689

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
           Y  +   EE + L    V  G KP+   ++ + + +  +G
Sbjct: 690 YVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCRNG 729


>gi|326504498|dbj|BAJ91081.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 793

 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 168/317 (52%), Gaps = 2/317 (0%)

Query: 188 IFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
           + YNV +    +    ++ +  L + M ++ I LD  TY+T+I+C +R  L+ EA + F+
Sbjct: 214 VTYNVVLHVYSKIAVPWKDVVALVDSMKNDGIPLDRYTYNTLISCCRRGALYKEAAKVFD 273

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
            M   G  PD+VT++++LDVY K+   +E + + +     G  P  + ++ L   + + G
Sbjct: 274 EMRAAGFEPDKVTFNSLLDVYGKARMHDEAIGVLKEMELGGCPPSVVTYNSLISSYVKDG 333

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
                  + +EM+  G+QP+++ Y TL+  + +AGK   A   +DEM+ +G  P+  T  
Sbjct: 334 LLKEAAELKEEMEVKGIQPDVITYTTLISGLDRAGKIDAAIGTYDEMLRNGCKPNLCTYN 393

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
           ALIK++G      + + +++ +R   +  D + +NTLL +    GL  E   +F++MK S
Sbjct: 394 ALIKLHGVRGKFPEMMAVFDDLRSAGFVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKS 453

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
            Y  P+  +Y ++++ Y   G  D ++E+++ M E G+  ++     ++  L +  R + 
Sbjct: 454 GYV-PERDTYVSLISSYSRCGLFDQSMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQ 512

Query: 487 LVRVFGVSIDRGVKPDD 503
             ++F    +   +PD+
Sbjct: 513 AEKLFAEMENLDCRPDE 529



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/382 (22%), Positives = 176/382 (46%), Gaps = 3/382 (0%)

Query: 156 NALLILNSLKF-WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMV 214
           NAL+ L+ ++  + +    F+ ++S    P + + +N  +           +  +  EM 
Sbjct: 393 NALIKLHGVRGKFPEMMAVFDDLRSAGFVP-DVVTWNTLLAVFGQNGLDSEVSGVFKEMK 451

Query: 215 SNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVE 274
            +    +  TY ++I+   RC LFD+++E ++RM + G+ PD  TY+A+L   A+ G+ E
Sbjct: 452 KSGYVPERDTYVSLISSYSRCGLFDQSMEIYKRMIEAGIYPDISTYNAVLSALARGGRWE 511

Query: 275 EVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLL 334
           +   L+        +PD +++S L   +  +   D ++ + +++ +  ++ +  +  TL+
Sbjct: 512 QAEKLFAEMENLDCRPDELSYSSLLHAYANAKKLDKMKALSEDIYAEKIESHHGLVKTLV 571

Query: 335 EAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWP 394
               K          F E+     + D   L A++ +YGK R  K   E+   M+ +   
Sbjct: 572 LVNSKVNNLSETEKAFLELGRRRCSLDINVLNAMVSVYGKNRMVKKVEEILSLMKGSSIN 631

Query: 395 MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIE 454
           +    YN+L++M + +G  E+ E +  ++K S   +PD YSY  M+  YG  G +  A  
Sbjct: 632 LSTATYNSLMHMYSRLGDCEKCENILTEIK-SSGARPDRYSYNTMIYAYGRKGQMKEASR 690

Query: 455 LFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVS 514
           LF EM   G+  +++     ++        ++ + +    + RG KP++R    +L    
Sbjct: 691 LFSEMKSSGLIPDIVTYNIFVKSYVANSMFEEAIDLVRYMVTRGCKPNERTYNSILQEYC 750

Query: 515 LCETSEDVGKVITCLQQANPKL 536
                 D    ++ L Q +P +
Sbjct: 751 RHGKIADAKSFLSNLPQLHPGI 772



 Score =  125 bits (315), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 155/321 (48%), Gaps = 2/321 (0%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           W+      + +K+  + P++   YN  +   R G  ++   ++ +EM +   E D +T++
Sbjct: 230 WKDVVALVDSMKNDGI-PLDRYTYNTLISCCRRGALYKEAAKVFDEMRAAGFEPDKVTFN 288

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           +++    +  + DEAI   + M   G  P  VTY++++  Y K G ++E   L E     
Sbjct: 289 SLLDVYGKARMHDEAIGVLKEMELGGCPPSVVTYNSLISSYVKDGLLKEAAELKEEMEVK 348

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +PD I ++ L      +G  D       EM   G +PNL  YN L++  G  GK    
Sbjct: 349 GIQPDVITYTTLISGLDRAGKIDAAIGTYDEMLRNGCKPNLCTYNALIKLHGVRGKFPEM 408

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            ++FD++  +G  PD  T   L+ ++G+     +   +++ M+++ +  +   Y +L++ 
Sbjct: 409 MAVFDDLRSAGFVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKSGYVPERDTYVSLISS 468

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
            +  GL +++  +++ M +     PD  +Y A+L+    GG  + A +LF EM  L    
Sbjct: 469 YSRCGLFDQSMEIYKRM-IEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMENLDCRP 527

Query: 467 NVMGCTCLIQCLGKARRIDDL 487
           + +  + L+     A+++D +
Sbjct: 528 DELSYSSLLHAYANAKKLDKM 548



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 130/276 (47%), Gaps = 36/276 (13%)

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           P   + YN  + S       +   +L  EM    I+ D ITY+T+I+   R    D AI 
Sbjct: 316 PPSVVTYNSLISSYVKDGLLKEAAELKEEMEVKGIQPDVITYTTLISGLDRAGKIDAAIG 375

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
            ++ M + G  P+  TY+A++ ++   GK  E++++++   ++G+ PD + ++ L  +FG
Sbjct: 376 TYDEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMAVFDDLRSAGFVPDVVTWNTLLAVFG 435

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
           ++G    +  V +EMK  G  P    Y +L+ +  + G    +  ++  M+E+G+ PD  
Sbjct: 436 QNGLDSEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQSMEIYKRMIEAGIYPDIS 495

Query: 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
           T                                   YN +L+  A  G  E+AE+LF +M
Sbjct: 496 T-----------------------------------YNAVLSALARGGRWEQAEKLFAEM 520

Query: 424 KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           +  D C+PD  SY+++L+ Y +   +D    L E++
Sbjct: 521 ENLD-CRPDELSYSSLLHAYANAKKLDKMKALSEDI 555



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 85/218 (38%), Gaps = 74/218 (33%)

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMREN---------------------KW----- 393
           PD    TAL+  + +A   +DA+ ++ RM  N                      W     
Sbjct: 176 PDASAYTALVSAFSRASRFRDAVAVFRRMVANGIQPAIVTYNVVLHVYSKIAVPWKDVVA 235

Query: 394 ----------PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIY 443
                     P+D   YNTL++ C    L +EA ++F++M+ + + +PD  ++ ++L++Y
Sbjct: 236 LVDSMKNDGIPLDRYTYNTLISCCRRGALYKEAAKVFDEMRAAGF-EPDKVTFNSLLDVY 294

Query: 444 GSGGNVDNAI-----------------------------------ELFEEMSELGVAINV 468
           G     D AI                                   EL EEM   G+  +V
Sbjct: 295 GKARMHDEAIGVLKEMELGGCPPSVVTYNSLISSYVKDGLLKEAAELKEEMEVKGIQPDV 354

Query: 469 MGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLC 506
           +  T LI  L +A +ID  +  +   +  G KP+  LC
Sbjct: 355 ITYTTLISGLDRAGKIDAAIGTYDEMLRNGCKPN--LC 390



 Score = 52.4 bits (124), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 51/216 (23%), Positives = 87/216 (40%), Gaps = 19/216 (8%)

Query: 116 SYNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTRENALLILNSL----------K 165
           S++  V+ L L   K+N+   TE+AFL        +  R    L +N L          +
Sbjct: 562 SHHGLVKTLVLVNSKVNNLSETEKAFL--------ELGRRRCSLDINVLNAMVSVYGKNR 613

Query: 166 FWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITY 225
             +K     + +K  ++  + T  YN  M         +  E +  E+ S+    D  +Y
Sbjct: 614 MVKKVEEILSLMKGSSIN-LSTATYNSLMHMYSRLGDCEKCENILTEIKSSGARPDRYSY 672

Query: 226 STIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVA 285
           +T+I    R     EA   F  M  +GL+PD VTY+  +  Y  +   EE + L    V 
Sbjct: 673 NTMIYAYGRKGQMKEASRLFSEMKSSGLIPDIVTYNIFVKSYVANSMFEEAIDLVRYMVT 732

Query: 286 SGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
            G KP+   ++ + + +   G     +  L  +  L
Sbjct: 733 RGCKPNERTYNSILQEYCRHGKIADAKSFLSNLPQL 768


>gi|115473111|ref|NP_001060154.1| Os07g0590600 [Oryza sativa Japonica Group]
 gi|34393454|dbj|BAC82993.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113611690|dbj|BAF22068.1| Os07g0590600 [Oryza sativa Japonica Group]
          Length = 784

 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 89/324 (27%), Positives = 171/324 (52%), Gaps = 2/324 (0%)

Query: 188 IFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
           + YNV +    +    ++ + +L   M  + +  D  TY+T+I+C +R  L+ EA + F+
Sbjct: 208 VTYNVVLHVYSKMAVPWKEVVELVASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFD 267

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
            M  +G  PD+VT++++LDVY K+ + +E + + +     G  P  + ++ L   + + G
Sbjct: 268 EMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDG 327

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
             +    + QEM+  G++P++V Y TL+  + +AGK   A   +DEMV +G  P+  T  
Sbjct: 328 LLEQAVALKQEMEVKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYN 387

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
           ALIK++G      + + +++  R   +  D + +NTLL +    GL  E   +F++MK +
Sbjct: 388 ALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKA 447

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
            Y  P+  +Y ++++ Y   G  D A+++++ M E G+  +V     ++  L +  R + 
Sbjct: 448 GYI-PERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQ 506

Query: 487 LVRVFGVSIDRGVKPDDRLCGCLL 510
             ++F    +R  KPD+     LL
Sbjct: 507 AEKLFAEMEERDCKPDEYSYSSLL 530



 Score =  125 bits (315), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 140/281 (49%), Gaps = 1/281 (0%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           TY ++I+   RC LFD A++ ++RM + G+ PD  TY+A+L   A+ G+ E+   L+   
Sbjct: 455 TYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEM 514

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
                KPD  ++S L   +  +   D ++ +  ++ S  ++P+  +  TL+    K    
Sbjct: 515 EERDCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNL 574

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
             A   F E+ +   + D   L A++ IYGK R  +   ++   M+E+   +    YN+L
Sbjct: 575 AEAEKAFLELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSL 634

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           ++M + +G  E+ E +  ++K S   +PD YSY  ++  YG  G +  A  LF EM   G
Sbjct: 635 MHMYSRLGDCEKCENILTEIK-SSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSG 693

Query: 464 VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR 504
           +  +V+     ++        ++ + +    + +G KP++R
Sbjct: 694 LKPDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNER 734



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 149/296 (50%), Gaps = 4/296 (1%)

Query: 255 PDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG-DYDGIRY 313
           PD   Y+A++  ++++G+  + ++++ R V SG +P  + ++V+  ++ +    +  +  
Sbjct: 170 PDAGAYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKEVVE 229

Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYG 373
           ++  MK  GV P+   YNTL+    +      A  +FDEM  SG  PD+ T  +L+ +YG
Sbjct: 230 LVASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYG 289

Query: 374 KARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDN 433
           KAR   +A+E+ + M     P   + YN+L++     GL+E+A  L ++M++    KPD 
Sbjct: 290 KARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKG-MKPDV 348

Query: 434 YSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGV 493
            +YT +++     G +D AI  ++EM   G   N+     LI+  G   +  +++ VF  
Sbjct: 349 VTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFDE 408

Query: 494 SIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAFLNLIEDNS 547
               G  PD      LL+V        +V  V   +++A   P+   +++LI   S
Sbjct: 409 FRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYS 464



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 131/276 (47%), Gaps = 36/276 (13%)

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           P   + YN  + S       +    L  EM    ++ D +TY+T+I+   R    D AI 
Sbjct: 310 PPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGMKPDVVTYTTLISGLDRAGKIDAAIV 369

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
            ++ M + G  P+  TY+A++ ++   GK  E++++++   ++G+ PD + ++ L  +FG
Sbjct: 370 EYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFG 429

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
           ++G    +  V +EMK  G  P    Y +L+ +  + G   LA  ++  M+E+G+ PD  
Sbjct: 430 QNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVS 489

Query: 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
           T                                   YN +L+  A  G  E+AE+LF +M
Sbjct: 490 T-----------------------------------YNAVLSALARGGRWEQAEKLFAEM 514

Query: 424 KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           +  D CKPD YSY+++L+ Y +   +D    L +++
Sbjct: 515 EERD-CKPDEYSYSSLLHAYANAKRLDKMKALSDDI 549



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 108/225 (48%), Gaps = 7/225 (3%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           W+++   F  ++ ++  P E   Y+  + +    ++   ++ L++++ S  IE  N    
Sbjct: 504 WEQAEKLFAEMEERDCKPDE-YSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVK 562

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG---KVEEVLSLYERG 283
           T++    + N   EA + F  + +     D    +A++ +Y K+    KVE++LSL +  
Sbjct: 563 TLVLVNSKVNNLAEAEKAFLELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKE- 621

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
             S        ++ L  M+   GD +    +L E+KS GV+P+   YNT++ A G+ G+ 
Sbjct: 622 --SAINLSAATYNSLMHMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQM 679

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
             A  LF EM  SGL PD  T    +K Y      ++A+EL   M
Sbjct: 680 KEASRLFSEMKCSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRYM 724



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 113/259 (43%), Gaps = 44/259 (16%)

Query: 282 RGVASGWKPDPIAFSVLGKMF--GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
           R + SG  P P   +V+G +   G+ G      +  +E+   GV  +  V  T +  M +
Sbjct: 95  RDLLSGL-PAPELAAVVGALGSRGQPGAALAALHAARELHGEGVLHHPRVLATAIRVMAR 153

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER------------ 387
           AG+   A +L D    +   PD    TAL+  + +A   +DA+ ++ R            
Sbjct: 154 AGRLAEASALLD----AAPGPDAGAYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVT 209

Query: 388 ------------------------MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
                                   M+E+    D   YNTL++ C    L +EA ++F++M
Sbjct: 210 YNVVLHVYSKMAVPWKEVVELVASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEM 269

Query: 424 KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483
           K S + +PD  ++ ++L++YG     D AIE+ +EM  +G   +V+    LI    K   
Sbjct: 270 KASGF-EPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGL 328

Query: 484 IDDLVRVFGVSIDRGVKPD 502
           ++  V +      +G+KPD
Sbjct: 329 LEQAVALKQEMEVKGMKPD 347



 Score = 48.5 bits (114), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 47/100 (47%)

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
           E +  E+ S+ +  D  +Y+T+I    R     EA   F  M  +GL PD VTY+  +  
Sbjct: 648 ENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKS 707

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
           Y  +   EE + L    V  G KP+   ++ + + +  +G
Sbjct: 708 YVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCRNG 747


>gi|356574297|ref|XP_003555285.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Glycine max]
          Length = 794

 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 90/324 (27%), Positives = 171/324 (52%), Gaps = 2/324 (0%)

Query: 188 IFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
           I YN  +    + G  +  I  L  +M  + +  D  TY+T+I+C +  +L++EA++ FE
Sbjct: 215 ITYNAILNVYGKMGMPWAKIIALVQDMKCHGLAPDLCTYNTLISCCRAGSLYEEALDLFE 274

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
            +   G  PD VTY+A+LDVY KS + +E + + ++  ++ ++P  + ++ L   +   G
Sbjct: 275 EIKVAGFRPDAVTYNALLDVYGKSRRPKEAMEVLKQMESNSFRPSVVTYNSLVSAYVRGG 334

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
             +    + ++M   G++P++  Y TLL     AGK  LA  +F+EM + G  P+  T  
Sbjct: 335 LLEDALVLKRKMVDKGIKPDVYTYTTLLSGFVNAGKEELAMEVFEEMRKVGCKPNICTFN 394

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
           ALIK+YG     ++ +++++ ++  K   D + +NTLL +    G+  E   +FE+MK S
Sbjct: 395 ALIKMYGDRGKFEEMVKVFKEIKVCKCSPDIVTWNTLLAVFGQNGMDSEVSGVFEEMKRS 454

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
            +  P+  ++  +++ YG  G+ D A+  ++ M E GV+ ++     ++  L +    + 
Sbjct: 455 RFA-PERDTFNTLISAYGRCGSFDQAMAAYKRMLEAGVSPDLSTYNAVLATLARGGLWEQ 513

Query: 487 LVRVFGVSIDRGVKPDDRLCGCLL 510
             +V     D G KP++     LL
Sbjct: 514 SEKVLAEMKDGGCKPNEVTYSSLL 537



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 92/347 (26%), Positives = 166/347 (47%), Gaps = 2/347 (0%)

Query: 166 FWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITY 225
            ++++   F  IK     P + + YN  +      R+ +   ++  +M SN      +TY
Sbjct: 265 LYEEALDLFEEIKVAGFRP-DAVTYNALLDVYGKSRRPKEAMEVLKQMESNSFRPSVVTY 323

Query: 226 STIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVA 285
           +++++   R  L ++A+    +M   G+ PD  TY+ +L  +  +GK E  + ++E    
Sbjct: 324 NSLVSAYVRGGLLEDALVLKRKMVDKGIKPDVYTYTTLLSGFVNAGKEELAMEVFEEMRK 383

Query: 286 SGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGL 345
            G KP+   F+ L KM+G+ G ++ +  V +E+K     P++V +NTLL   G+ G    
Sbjct: 384 VGCKPNICTFNALIKMYGDRGKFEEMVKVFKEIKVCKCSPDIVTWNTLLAVFGQNGMDSE 443

Query: 346 ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405
              +F+EM  S   P+  T   LI  YG+      A+  ++RM E     D   YN +L 
Sbjct: 444 VSGVFEEMKRSRFAPERDTFNTLISAYGRCGSFDQAMAAYKRMLEAGVSPDLSTYNAVLA 503

Query: 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
             A  GL E++E++  +MK    CKP+  +Y+++L+ Y +G  V+    L EE+    + 
Sbjct: 504 TLARGGLWEQSEKVLAEMK-DGGCKPNEVTYSSLLHAYANGREVERMNALAEEIYSGTIK 562

Query: 466 INVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSV 512
            + +    L+    K   + +  R F     RG+ PD      +LS+
Sbjct: 563 THAVLLKTLVLVNSKVDLLVETERAFLEFRKRGISPDVTTSNAMLSI 609



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 119/494 (24%), Positives = 212/494 (42%), Gaps = 53/494 (10%)

Query: 106 SLQRQKRSTYSYNPRV-RDLKLFARKLNDCDNTEEAFLRAITEIPHQPTRENALLILNSL 164
           S  R  RS +  +P+  R L+       D +   E       +        + L I+  L
Sbjct: 57  STHRTPRSPHRLSPQAHRILQTLIHPSFDSNRFHEILPLLFDQPSSSSLSWDILGIIKGL 116

Query: 165 KFWQK---SYFFFNWIKSQN----LFPMETIFYNVTM--KSLRFGRQFQLIEQLANEMVS 215
            F  K   +   F++I+++N    L     I   V++  K+ R  R   L+  L     +
Sbjct: 117 GFNNKFDLALSLFDFIRTRNDRVSLLNGSVIAVIVSILGKTGRVSRAASLLHNLE----A 172

Query: 216 NEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK--- 272
           +  E+D   Y+++IT       + +A++ F +M + G  P  +TY+AIL+VY K G    
Sbjct: 173 DGFEVDVYGYTSLITAYANNKKYRDALKVFGKMKEVGCEPTLITYNAILNVYGKMGMPWA 232

Query: 273 ---------------------------------VEEVLSLYERGVASGWKPDPIAFSVLG 299
                                             EE L L+E    +G++PD + ++ L 
Sbjct: 233 KIIALVQDMKCHGLAPDLCTYNTLISCCRAGSLYEEALDLFEEIKVAGFRPDAVTYNALL 292

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
            ++G+S        VL++M+S   +P++V YN+L+ A  + G    A  L  +MV+ G+ 
Sbjct: 293 DVYGKSRRPKEAMEVLKQMESNSFRPSVVTYNSLVSAYVRGGLLEDALVLKRKMVDKGIK 352

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
           PD  T T L+  +  A   + A+E++E MR+     +   +N L+ M  D G  EE  ++
Sbjct: 353 PDVYTYTTLLSGFVNAGKEELAMEVFEEMRKVGCKPNICTFNALIKMYGDRGKFEEMVKV 412

Query: 420 FEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479
           F+++K+   C PD  ++  +L ++G  G       +FEEM     A        LI   G
Sbjct: 413 FKEIKVCK-CSPDIVTWNTLLAVFGQNGMDSEVSGVFEEMKRSRFAPERDTFNTLISAYG 471

Query: 480 KARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLV 537
           +    D  +  +   ++ GV PD      +L+ ++     E   KV+  ++     P  V
Sbjct: 472 RCGSFDQAMAAYKRMLEAGVSPDLSTYNAVLATLARGGLWEQSEKVLAEMKDGGCKPNEV 531

Query: 538 AFLNLIEDNSTGFE 551
            + +L+   + G E
Sbjct: 532 TYSSLLHAYANGRE 545



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 138/294 (46%), Gaps = 7/294 (2%)

Query: 212 EMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG 271
           EM  +    +  T++T+I+   RC  FD+A+  ++RM + G+ PD  TY+A+L   A+ G
Sbjct: 450 EMKRSRFAPERDTFNTLISAYGRCGSFDQAMAAYKRMLEAGVSPDLSTYNAVLATLARGG 509

Query: 272 ---KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
              + E+VL+  + G   G KP+ + +S L   +    + + +  + +E+ S  ++ + V
Sbjct: 510 LWEQSEKVLAEMKDG---GCKPNEVTYSSLLHAYANGREVERMNALAEEIYSGTIKTHAV 566

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
           +  TL+    K          F E  + G++PD  T  A++ IYG+ +    A E+   M
Sbjct: 567 LLKTLVLVNSKVDLLVETERAFLEFRKRGISPDVTTSNAMLSIYGRKKMVPKANEILNFM 626

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
            E+   +    YN+L+ M +      ++E++F ++ L    +PD  SY  ++  Y     
Sbjct: 627 YESGLTLSLTSYNSLMYMYSRTENFHKSEQIFREI-LDKGIEPDVISYNIVIYAYCRNDM 685

Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           +D A  + EEM       +V+     I          + + V    I +G KP+
Sbjct: 686 MDEAKRIIEEMKVPAPVPDVVTYNTFIAAYAADSMFVEAIDVIRYMIKQGCKPN 739



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/268 (20%), Positives = 112/268 (41%), Gaps = 1/268 (0%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           P   T    L  L     W++S      +K     P E + Y+  + +   GR+ + +  
Sbjct: 493 PDLSTYNAVLATLARGGLWEQSEKVLAEMKDGGCKPNE-VTYSSLLHAYANGREVERMNA 551

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           LA E+ S  I+   +   T++    + +L  E    F    K G+ PD  T +A+L +Y 
Sbjct: 552 LAEEIYSGTIKTHAVLLKTLVLVNSKVDLLVETERAFLEFRKRGISPDVTTSNAMLSIYG 611

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           +   V +   +      SG      +++ L  M+  + ++     + +E+   G++P+++
Sbjct: 612 RKKMVPKANEILNFMYESGLTLSLTSYNSLMYMYSRTENFHKSEQIFREILDKGIEPDVI 671

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            YN ++ A  +      A+ + +EM      PD  T    I  Y       +A+++   M
Sbjct: 672 SYNIVIYAYCRNDMMDEAKRIIEEMKVPAPVPDVVTYNTFIAAYAADSMFVEAIDVIRYM 731

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEA 416
            +     +   YN++++    + L +EA
Sbjct: 732 IKQGCKPNHNTYNSIVDWYCKLKLRDEA 759


>gi|255555231|ref|XP_002518652.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542033|gb|EEF43577.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 827

 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 107/423 (25%), Positives = 199/423 (47%), Gaps = 8/423 (1%)

Query: 188 IFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
           I YNV +    + G  +  I  L + M S+ +  D+ TY+T+I+C +R +L++EA + FE
Sbjct: 253 ITYNVILNVYGKMGMPWSKISGLVHGMKSSGVAPDDYTYNTLISCCRRGSLYEEAAQVFE 312

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
            M  +G  PD+VT++ +LDVY KS + +E + + +    SG+ P  + ++ L   +   G
Sbjct: 313 EMKLSGFSPDKVTFNTLLDVYGKSRRPKEAMEVLKEMEFSGFSPSIVTYNSLISAYARDG 372

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
                  +  +M   G++P++  Y TLL    KAG    A  +F EM  +G  P+  T  
Sbjct: 373 LLREAMELKDQMVEKGIKPDVFTYTTLLSGFEKAGMDEPAMRIFGEMRAAGCKPNICTFN 432

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
           ALIK++G      + ++++E +       D + +NTLL +    G+  E   +F++MK +
Sbjct: 433 ALIKMHGNRGRFAEMMKVFEEIEICNCAPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRA 492

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
            +  P+  ++  +++ Y   G+   A+ +++ M E GV  ++     ++  L +    + 
Sbjct: 493 GFV-PERDTFNTLISAYSRCGSFQQAMAVYKRMLEAGVTPDLSSYNAVLAALARGGLWEQ 551

Query: 487 LVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVG----KVITCLQQANPKLVAFLNL 542
             +VF    D   KP++     LL   +  +  E +     ++ + L +  P L+  L L
Sbjct: 552 SEKVFAEMKDGRCKPNELTYCSLLHAYANSKEIERMHTLAEEIYSGLTEPVPVLLKTLVL 611

Query: 543 IEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLY 602
           +          +  F  + K    D      N +I I   R +  +A+E+L      G  
Sbjct: 612 VNSKCDLLMETEHAFEELKKKGSPDLST--LNAMIAIYGRRQMVAKANEILNFMNESGFS 669

Query: 603 PGL 605
           P L
Sbjct: 670 PSL 672



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 101/390 (25%), Positives = 184/390 (47%), Gaps = 17/390 (4%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           +TY+++I+   R  L  EA+E  ++M + G+ PD  TY+ +L  + K+G  E  + ++  
Sbjct: 359 VTYNSLISAYARDGLLREAMELKDQMVEKGIKPDVFTYTTLLSGFEKAGMDEPAMRIFGE 418

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
             A+G KP+   F+ L KM G  G +  +  V +E++     P++V +NTLL   G+ G 
Sbjct: 419 MRAAGCKPNICTFNALIKMHGNRGRFAEMMKVFEEIEICNCAPDIVTWNTLLAVFGQNGM 478

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
                 +F EM  +G  P+  T   LI  Y +    + A+ +++RM E     D   YN 
Sbjct: 479 DSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGSFQQAMAVYKRMLEAGVTPDLSSYNA 538

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM-SE 461
           +L   A  GL E++E++F +MK    CKP+  +Y ++L+ Y +   ++    L EE+ S 
Sbjct: 539 VLAALARGGLWEQSEKVFAEMK-DGRCKPNELTYCSLLHAYANSKEIERMHTLAEEIYSG 597

Query: 462 LGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSED 521
           L   + V+  T L+    K   + +    F     +G  PD      ++++    +    
Sbjct: 598 LTEPVPVLLKT-LVLVNSKCDLLMETEHAFEELKKKG-SPDLSTLNAMIAIYGRRQMVAK 655

Query: 522 VGKVITCLQQA--NPKLVAF--LNLIEDNSTGFENIKEEFRNVIKDTEVDARRP----FC 573
             +++  + ++  +P L  +  L  +   S  FE  +E    V+K+      +P    + 
Sbjct: 656 ANEILNFMNESGFSPSLATYNSLMYMHSRSENFERSEE----VLKEILAKGLKPDLISYN 711

Query: 574 NCLIDICRNRNLNERAHELLYLGTLYGLYP 603
             +   CRN  + + +    Y+ T YGL P
Sbjct: 712 TVIFAYCRNGRMKDASRIFSYMKT-YGLVP 740



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 95/384 (24%), Positives = 160/384 (41%), Gaps = 45/384 (11%)

Query: 204 QLIEQLANEMVS------NEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDE 257
           QL E    E +S      N + +D +     +   K+C++      W         + + 
Sbjct: 123 QLFEYYHKEELSLSSGTWNSLSMDVLGIIKGLGFYKKCDMAMSVFSWVREREDFESVLNC 182

Query: 258 VTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQE 317
              + I+ +  K GKV    S+       G+  D  A++ L   +  +G Y     V ++
Sbjct: 183 SVVAVIITMLGKEGKVSAASSILNNLRKDGFDLDVYAYTSLITAYASNGRYRDAVLVFKK 242

Query: 318 MKSLGVQPNLVVYNTLLEAMGKAGKP-----GL--------------------------- 345
           M+  G +P L+ YN +L   GK G P     GL                           
Sbjct: 243 MEEEGCKPTLITYNVILNVYGKMGMPWSKISGLVHGMKSSGVAPDDYTYNTLISCCRRGS 302

Query: 346 ----ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYN 401
               A  +F+EM  SG +PD+ T   L+ +YGK+R  K+A+E+ + M  + +    + YN
Sbjct: 303 LYEEAAQVFEEMKLSGFSPDKVTFNTLLDVYGKSRRPKEAMEVLKEMEFSGFSPSIVTYN 362

Query: 402 TLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461
           +L++  A  GL+ EA  L +D  +    KPD ++YT +L+ +   G  + A+ +F EM  
Sbjct: 363 SLISAYARDGLLREAMEL-KDQMVEKGIKPDVFTYTTLLSGFEKAGMDEPAMRIFGEMRA 421

Query: 462 LGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSED 521
            G   N+     LI+  G   R  ++++VF         PD      LL+V        +
Sbjct: 422 AGCKPNICTFNALIKMHGNRGRFAEMMKVFEEIEICNCAPDIVTWNTLLAVFGQNGMDSE 481

Query: 522 VGKVITCLQQAN--PKLVAFLNLI 543
           V  V   +++A   P+   F  LI
Sbjct: 482 VSGVFKEMKRAGFVPERDTFNTLI 505



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/313 (23%), Positives = 140/313 (44%), Gaps = 2/313 (0%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           T++T+I+   RC  F +A+  ++RM + G+ PD  +Y+A+L   A+ G  E+   ++   
Sbjct: 500 TFNTLISAYSRCGSFQQAMAVYKRMLEAGVTPDLSSYNAVLAALARGGLWEQSEKVFAEM 559

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
                KP+ + +  L   +  S + + +  + +E+ S   +P  V+  TL+    K    
Sbjct: 560 KDGRCKPNELTYCSLLHAYANSKEIERMHTLAEEIYSGLTEPVPVLLKTLVLVNSKCDLL 619

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
                 F+E+ + G +PD  TL A+I IYG+ +    A E+   M E+ +      YN+L
Sbjct: 620 METEHAFEELKKKG-SPDLSTLNAMIAIYGRRQMVAKANEILNFMNESGFSPSLATYNSL 678

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           + M +     E +E + +++ L+   KPD  SY  ++  Y   G + +A  +F  M   G
Sbjct: 679 MYMHSRSENFERSEEVLKEI-LAKGLKPDLISYNTVIFAYCRNGRMKDASRIFSYMKTYG 737

Query: 464 VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVG 523
           +  +V+     +         +D + V    I  G K +      ++          D  
Sbjct: 738 LVPDVITYNTFVASYAADSLFEDAIGVVRYMIKHGCKRNQNTYNSIVDGYCKHSRRADAI 797

Query: 524 KVITCLQQANPKL 536
             ++ L Q +P +
Sbjct: 798 MFVSSLNQLDPHV 810



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 112/243 (46%), Gaps = 8/243 (3%)

Query: 166 FWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITY 225
            W++S   F  +K     P E + Y   + +    ++ + +  LA E+ S   E   +  
Sbjct: 548 LWEQSEKVFAEMKDGRCKPNE-LTYCSLLHAYANSKEIERMHTLAEEIYSGLTEPVPVLL 606

Query: 226 STIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS---GKVEEVLSLYER 282
            T++    +C+L  E    FE + K G  PD  T +A++ +Y +     K  E+L+    
Sbjct: 607 KTLVLVNSKCDLLMETEHAFEELKKKG-SPDLSTLNAMIAIYGRRQMVAKANEILNFMNE 665

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
              SG+ P    ++ L  M   S +++    VL+E+ + G++P+L+ YNT++ A  + G+
Sbjct: 666 ---SGFSPSLATYNSLMYMHSRSENFERSEEVLKEILAKGLKPDLISYNTVIFAYCRNGR 722

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
              A  +F  M   GL PD  T    +  Y      +DA+ +   M ++    +   YN+
Sbjct: 723 MKDASRIFSYMKTYGLVPDVITYNTFVASYAADSLFEDAIGVVRYMIKHGCKRNQNTYNS 782

Query: 403 LLN 405
           +++
Sbjct: 783 IVD 785



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 69/323 (21%), Positives = 126/323 (39%), Gaps = 36/323 (11%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           F  +K     P    F  +     R G  FQ    +   M+   +  D  +Y+ ++    
Sbjct: 486 FKEMKRAGFVPERDTFNTLISAYSRCG-SFQQAMAVYKRMLEAGVTPDLSSYNAVLAALA 544

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
           R  L++++ + F  M      P+E+TY ++L  YA S ++E + +L E   +   +P P+
Sbjct: 545 RGGLWEQSEKVFAEMKDGRCKPNELTYCSLLHAYANSKEIERMHTLAEEIYSGLTEPVPV 604

Query: 294 --------------------AFSVLGK--------------MFGESGDYDGIRYVLQEMK 319
                               AF  L K              ++G          +L  M 
Sbjct: 605 LLKTLVLVNSKCDLLMETEHAFEELKKKGSPDLSTLNAMIAIYGRRQMVAKANEILNFMN 664

Query: 320 SLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAK 379
             G  P+L  YN+L+    ++     +  +  E++  GL PD  +   +I  Y +    K
Sbjct: 665 ESGFSPSLATYNSLMYMHSRSENFERSEEVLKEILAKGLKPDLISYNTVIFAYCRNGRMK 724

Query: 380 DALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAM 439
           DA  ++  M+      D I YNT +   A   L E+A  +   M +   CK +  +Y ++
Sbjct: 725 DASRIFSYMKTYGLVPDVITYNTFVASYAADSLFEDAIGVVRYM-IKHGCKRNQNTYNSI 783

Query: 440 LNIYGSGGNVDNAIELFEEMSEL 462
           ++ Y       +AI     +++L
Sbjct: 784 VDGYCKHSRRADAIMFVSSLNQL 806


>gi|449530359|ref|XP_004172163.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Cucumis sativus]
          Length = 831

 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 106/442 (23%), Positives = 200/442 (45%), Gaps = 7/442 (1%)

Query: 166 FWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITY 225
            ++++   F  +K+    P + + YN  +      R+ +   ++  EM ++      +TY
Sbjct: 306 LYEEAAEVFEEMKAAGFSP-DKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTY 364

Query: 226 STIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVA 285
           +++I+   R  L DEA+E   +M K G+ PD  TY+ +L  + K+GK +  + ++E    
Sbjct: 365 NSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRV 424

Query: 286 SGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGL 345
           +G +P+   F+ L KM G  G++  +  V +E+K     P++V +NTLL   G+ G    
Sbjct: 425 AGCQPNICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMDSE 484

Query: 346 ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405
              +F EM  +G  P+  T   LI  Y +  +   A+ ++ RM +     D   YN +L 
Sbjct: 485 VSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLA 544

Query: 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
             A  GL E++E++  +MK    CKP+  +Y ++L+ Y +G  V+    L EE+    + 
Sbjct: 545 ALARGGLWEQSEKVLAEMK-DGRCKPNELTYCSLLHAYANGKEVERMSALAEEIYSGIIE 603

Query: 466 INVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKV 525
              +    L+    K+  + +  R F    ++G  PD      ++S+           ++
Sbjct: 604 PQAVLLKTLVLVYSKSDLLTETERAFLELREQGFSPDITTLNAMVSIYGRRRMVSKTNEI 663

Query: 526 ITCLQQAN--PKLVAF--LNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICR 581
           +  ++ +   P L  +  L  +   +  FE  ++  R +I          F   +   CR
Sbjct: 664 LNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVIFAYCR 723

Query: 582 NRNLNERAHELLYLGTLYGLYP 603
           N  + E A  +      +GL P
Sbjct: 724 NGRMKE-ASRIFAEMKDFGLAP 744



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 162/317 (51%), Gaps = 2/317 (0%)

Query: 188 IFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
           I YNV +    + G  +  I  L + M S+ +  D  TY+T+I+  +R +L++EA E FE
Sbjct: 256 ITYNVILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFE 315

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
            M   G  PD+VTY+A+LDVY KS +  E + + +   ASG+ P  + ++ L   +   G
Sbjct: 316 EMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDG 375

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
             D    +  +M   G++P++  Y TLL    K GK   A  +F+EM  +G  P+  T  
Sbjct: 376 LLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFN 435

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
           ALIK++G      + ++++E ++  +   D + +NTLL +    G+  E   +F++MK +
Sbjct: 436 ALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRA 495

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
            +  P+  ++  +++ Y   G  D A+ ++  M + GV  ++     ++  L +    + 
Sbjct: 496 GFV-PERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALARGGLWEQ 554

Query: 487 LVRVFGVSIDRGVKPDD 503
             +V     D   KP++
Sbjct: 555 SEKVLAEMKDGRCKPNE 571



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 151/309 (48%), Gaps = 2/309 (0%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L +++ ++ + +D   Y+++IT       + EA+  F+++ + G  P  +TY+ IL+VY 
Sbjct: 207 LLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKKLEEEGCRPTLITYNVILNVYG 266

Query: 269 KSGKV-EEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
           K G    ++  L +   +SG  PD   ++ L         Y+    V +EMK+ G  P+ 
Sbjct: 267 KMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDK 326

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
           V YN LL+  GK+ +P  A  +  EM  SG  P   T  +LI  Y +     +A+EL  +
Sbjct: 327 VTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQ 386

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           M +     D   Y TLL+     G  + A ++FE+M+++  C+P+  ++ A++ ++G+ G
Sbjct: 387 MVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAG-CQPNICTFNALIKMHGNRG 445

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCG 507
           N    +++FEE+       +++    L+   G+     ++  VF      G  P+     
Sbjct: 446 NFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFN 505

Query: 508 CLLSVVSLC 516
            L+S  S C
Sbjct: 506 TLISAYSRC 514



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 75/316 (23%), Positives = 145/316 (45%), Gaps = 7/316 (2%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG---KVEEVLSLY 280
           T++T+I+   RC  FD+A+  + RM   G+ PD  TY+A+L   A+ G   + E+VL+  
Sbjct: 503 TFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEM 562

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
           + G     KP+ + +  L   +    + + +  + +E+ S  ++P  V+  TL+    K+
Sbjct: 563 KDGRC---KPNELTYCSLLHAYANGKEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSKS 619

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
                    F E+ E G +PD  TL A++ IYG+ R      E+   ++++ +      Y
Sbjct: 620 DLLTETERAFLELREQGFSPDITTLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTY 679

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           N+L+ M +     E++E +  ++ ++   KPD  S+  ++  Y   G +  A  +F EM 
Sbjct: 680 NSLMYMYSRTEHFEKSEDILREI-IAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMK 738

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSE 520
           + G+A +V+     I          + + V    I    KP+      L+         +
Sbjct: 739 DFGLAPDVITYNTFIASYASDSMFIEAIDVVKYMIKNECKPNQNTYNSLIDWFCKLNRRD 798

Query: 521 DVGKVITCLQQANPKL 536
           +    I+ L+  +P +
Sbjct: 799 EANSFISNLRNLDPSV 814



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 131/290 (45%), Gaps = 46/290 (15%)

Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
           + I+ V  K G+     SL       G   D  A++ L   +  +G Y     V ++++ 
Sbjct: 189 AVIISVLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKKLEE 248

Query: 321 LGVQPNLVVYNTLLEAMGKAGKP-----GLARSL-------------------------- 349
            G +P L+ YN +L   GK G P     GL  S+                          
Sbjct: 249 EGCRPTLITYNVILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYE 308

Query: 350 -----FDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
                F+EM  +G +PD+ T  AL+ +YGK+R  ++A+E+ + M  + +    + YN+L+
Sbjct: 309 EAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLI 368

Query: 405 NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
           +  A  GL++EA  L   M +    KPD ++YT +L+ +   G  D A+++FEEM   G 
Sbjct: 369 SAYARDGLLDEAMELKSQM-VKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGC 427

Query: 465 AINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVS 514
             N+     LI+  G      ++++VF          + ++C C+  +V+
Sbjct: 428 QPNICTFNALIKMHGNRGNFVEMMKVF---------EEIKICECVPDIVT 468



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/279 (22%), Positives = 127/279 (45%), Gaps = 7/279 (2%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           P   T    L  L     W++S      +K     P E + Y   + +   G++ + +  
Sbjct: 534 PDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNE-LTYCSLLHAYANGKEVERMSA 592

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           LA E+ S  IE   +   T++    + +L  E    F  + + G  PD  T +A++ +Y 
Sbjct: 593 LAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELREQGFSPDITTLNAMVSIYG 652

Query: 269 KS---GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325
           +     K  E+L+  +    SG+ P    ++ L  M+  +  ++    +L+E+ + G++P
Sbjct: 653 RRRMVSKTNEILNFIKD---SGFTPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKP 709

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
           +++ +NT++ A  + G+   A  +F EM + GL PD  T    I  Y       +A+++ 
Sbjct: 710 DIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIASYASDSMFIEAIDVV 769

Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
           + M +N+   +   YN+L++    +   +EA     +++
Sbjct: 770 KYMIKNECKPNQNTYNSLIDWFCKLNRRDEANSFISNLR 808



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 116/291 (39%), Gaps = 51/291 (17%)

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
           V   ++  +GK G+   A SL  ++   G+  D    T+LI  Y      ++A+ +++++
Sbjct: 187 VVAVIISVLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKKL 246

Query: 389 RENKWPMDFILYNTLLNMCADIG------------------------------------L 412
            E       I YN +LN+   +G                                    L
Sbjct: 247 EEEGCRPTLITYNVILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSL 306

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
            EEA  +FE+MK + +  PD  +Y A+L++YG       A+E+ +EM   G A +++   
Sbjct: 307 YEEAAEVFEEMKAAGF-SPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYN 365

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQA 532
            LI    +   +D+ + +    + +G+KPD      LLS        +   KV   ++ A
Sbjct: 366 SLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVA 425

Query: 533 --NPKLVAFLNLIE--DNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDI 579
              P +  F  LI+   N   F  + + F  +            C C+ DI
Sbjct: 426 GCQPNICTFNALIKMHGNRGNFVEMMKVFEEI----------KICECVPDI 466



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 78/181 (43%), Gaps = 5/181 (2%)

Query: 121 VRDLKLFARKLNDCDNTEEAFLRAITEIPHQP--TRENALL-ILNSLKFWQKSYFFFNWI 177
           ++ L L   K +    TE AFL  + E    P  T  NA++ I    +   K+    N+I
Sbjct: 609 LKTLVLVYSKSDLLTETERAFLE-LREQGFSPDITTLNAMVSIYGRRRMVSKTNEILNFI 667

Query: 178 KSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNL 237
           K     P  T  YN  M        F+  E +  E+++  ++ D I+++T+I    R   
Sbjct: 668 KDSGFTPSLTT-YNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGR 726

Query: 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
             EA   F  M   GL PD +TY+  +  YA      E + + +  + +  KP+   ++ 
Sbjct: 727 MKEASRIFAEMKDFGLAPDVITYNTFIASYASDSMFIEAIDVVKYMIKNECKPNQNTYNS 786

Query: 298 L 298
           L
Sbjct: 787 L 787


>gi|449438627|ref|XP_004137089.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Cucumis sativus]
          Length = 831

 Score =  149 bits (375), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 106/442 (23%), Positives = 200/442 (45%), Gaps = 7/442 (1%)

Query: 166 FWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITY 225
            ++++   F  +K+    P + + YN  +      R+ +   ++  EM ++      +TY
Sbjct: 306 LYEEAAEVFEEMKAAGFSP-DKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTY 364

Query: 226 STIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVA 285
           +++I+   R  L DEA+E   +M K G+ PD  TY+ +L  + K+GK +  + ++E    
Sbjct: 365 NSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRV 424

Query: 286 SGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGL 345
           +G +P+   F+ L KM G  G++  +  V +E+K     P++V +NTLL   G+ G    
Sbjct: 425 AGCQPNICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMDSE 484

Query: 346 ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405
              +F EM  +G  P+  T   LI  Y +  +   A+ ++ RM +     D   YN +L 
Sbjct: 485 VSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLA 544

Query: 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
             A  GL E++E++  +MK    CKP+  +Y ++L+ Y +G  V+    L EE+    + 
Sbjct: 545 ALARGGLWEQSEKVLAEMK-DGRCKPNELTYCSLLHAYANGKEVERMSALAEEIYSGIIE 603

Query: 466 INVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKV 525
              +    L+    K+  + +  R F    ++G  PD      ++S+           ++
Sbjct: 604 PQAVLLKTLVLVYSKSDLLTETERAFLELREQGFSPDITTLNAMVSIYGRRRMVSKTNEI 663

Query: 526 ITCLQQAN--PKLVAF--LNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICR 581
           +  ++ +   P L  +  L  +   +  FE  ++  R +I          F   +   CR
Sbjct: 664 LNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVIFAYCR 723

Query: 582 NRNLNERAHELLYLGTLYGLYP 603
           N  + E A  +      +GL P
Sbjct: 724 NGRMKE-ASRIFAEMKDFGLAP 744



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 162/317 (51%), Gaps = 2/317 (0%)

Query: 188 IFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
           I YNV +    + G  +  I  L + M S+ +  D  TY+T+I+  +R +L++EA E FE
Sbjct: 256 ITYNVILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFE 315

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
            M   G  PD+VTY+A+LDVY KS +  E + + +   ASG+ P  + ++ L   +   G
Sbjct: 316 EMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDG 375

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
             D    +  +M   G++P++  Y TLL    K GK   A  +F+EM  +G  P+  T  
Sbjct: 376 LLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFN 435

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
           ALIK++G      + ++++E ++  +   D + +NTLL +    G+  E   +F++MK +
Sbjct: 436 ALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRA 495

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
            +  P+  ++  +++ Y   G  D A+ ++  M + GV  ++     ++  L +    + 
Sbjct: 496 GFV-PERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALARGGLWEQ 554

Query: 487 LVRVFGVSIDRGVKPDD 503
             +V     D   KP++
Sbjct: 555 SEKVLAEMKDGRCKPNE 571



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 151/309 (48%), Gaps = 2/309 (0%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L +++ ++ + +D   Y+++IT       + EA+  F+++ + G  P  +TY+ IL+VY 
Sbjct: 207 LLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKKLEEEGCRPTLITYNVILNVYG 266

Query: 269 KSGKV-EEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
           K G    ++  L +   +SG  PD   ++ L         Y+    V +EMK+ G  P+ 
Sbjct: 267 KMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDK 326

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
           V YN LL+  GK+ +P  A  +  EM  SG  P   T  +LI  Y +     +A+EL  +
Sbjct: 327 VTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQ 386

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           M +     D   Y TLL+     G  + A ++FE+M+++  C+P+  ++ A++ ++G+ G
Sbjct: 387 MVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAG-CQPNICTFNALIKMHGNRG 445

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCG 507
           N    +++FEE+       +++    L+   G+     ++  VF      G  P+     
Sbjct: 446 NFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFN 505

Query: 508 CLLSVVSLC 516
            L+S  S C
Sbjct: 506 TLISAYSRC 514



 Score =  115 bits (289), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 146/316 (46%), Gaps = 7/316 (2%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG---KVEEVLSLY 280
           T++T+I+   RC  FD+A+  + RM   G+ PD  TY+A+L   A+ G   + E+VL+  
Sbjct: 503 TFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEM 562

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
           + G     KP+ + +  L   +    + + +  + +E+ S  ++P  V+  TL+    K+
Sbjct: 563 KDGRC---KPNELTYCSLLHAYANGKEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSKS 619

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
                    F E+ E G +PD  TL A++ IYG+ R      E+   ++++ +      Y
Sbjct: 620 DLLTETERAFLELREQGFSPDITTLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTY 679

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           N+L+ M +     E++E +  ++ ++   KPD  S+  ++  Y   G +  A  +F EM 
Sbjct: 680 NSLMYMYSRTEHFEKSEDILREI-IAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMK 738

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSE 520
           + G+A +V+     I          + + V    I  G KP+      L+         +
Sbjct: 739 DFGLAPDVITYNTFIASYASDSMFIEAIDVVKYMIKNGCKPNQNTYNSLIDWFCKLNRRD 798

Query: 521 DVGKVITCLQQANPKL 536
           +    I+ L+  +P +
Sbjct: 799 EASSFISNLRNLDPSV 814



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 131/290 (45%), Gaps = 46/290 (15%)

Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
           + I+ V  K G+     SL       G   D  A++ L   +  +G Y     V ++++ 
Sbjct: 189 AVIISVLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKKLEE 248

Query: 321 LGVQPNLVVYNTLLEAMGKAGKP-----GLARSL-------------------------- 349
            G +P L+ YN +L   GK G P     GL  S+                          
Sbjct: 249 EGCRPTLITYNVILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYE 308

Query: 350 -----FDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
                F+EM  +G +PD+ T  AL+ +YGK+R  ++A+E+ + M  + +    + YN+L+
Sbjct: 309 EAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLI 368

Query: 405 NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
           +  A  GL++EA  L   M +    KPD ++YT +L+ +   G  D A+++FEEM   G 
Sbjct: 369 SAYARDGLLDEAMELKSQM-VKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGC 427

Query: 465 AINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVS 514
             N+     LI+  G      ++++VF          + ++C C+  +V+
Sbjct: 428 QPNICTFNALIKMHGNRGNFVEMMKVF---------EEIKICECVPDIVT 468



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/279 (22%), Positives = 126/279 (45%), Gaps = 7/279 (2%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           P   T    L  L     W++S      +K     P E + Y   + +   G++ + +  
Sbjct: 534 PDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNE-LTYCSLLHAYANGKEVERMSA 592

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           LA E+ S  IE   +   T++    + +L  E    F  + + G  PD  T +A++ +Y 
Sbjct: 593 LAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELREQGFSPDITTLNAMVSIYG 652

Query: 269 KS---GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325
           +     K  E+L+  +    SG+ P    ++ L  M+  +  ++    +L+E+ + G++P
Sbjct: 653 RRRMVSKTNEILNFIKD---SGFTPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKP 709

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
           +++ +NT++ A  + G+   A  +F EM + GL PD  T    I  Y       +A+++ 
Sbjct: 710 DIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIASYASDSMFIEAIDVV 769

Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
           + M +N    +   YN+L++    +   +EA     +++
Sbjct: 770 KYMIKNGCKPNQNTYNSLIDWFCKLNRRDEASSFISNLR 808



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 116/291 (39%), Gaps = 51/291 (17%)

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
           V   ++  +GK G+   A SL  ++   G+  D    T+LI  Y      ++A+ +++++
Sbjct: 187 VVAVIISVLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKKL 246

Query: 389 RENKWPMDFILYNTLLNMCADIG------------------------------------L 412
            E       I YN +LN+   +G                                    L
Sbjct: 247 EEEGCRPTLITYNVILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSL 306

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
            EEA  +FE+MK + +  PD  +Y A+L++YG       A+E+ +EM   G A +++   
Sbjct: 307 YEEAAEVFEEMKAAGF-SPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYN 365

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQA 532
            LI    +   +D+ + +    + +G+KPD      LLS        +   KV   ++ A
Sbjct: 366 SLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVA 425

Query: 533 --NPKLVAFLNLIE--DNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDI 579
              P +  F  LI+   N   F  + + F  +            C C+ DI
Sbjct: 426 GCQPNICTFNALIKMHGNRGNFVEMMKVFEEI----------KICECVPDI 466



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 79/181 (43%), Gaps = 5/181 (2%)

Query: 121 VRDLKLFARKLNDCDNTEEAFLRAITEIPHQP--TRENALL-ILNSLKFWQKSYFFFNWI 177
           ++ L L   K +    TE AFL  + E    P  T  NA++ I    +   K+    N+I
Sbjct: 609 LKTLVLVYSKSDLLTETERAFLE-LREQGFSPDITTLNAMVSIYGRRRMVSKTNEILNFI 667

Query: 178 KSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNL 237
           K     P  T  YN  M        F+  E +  E+++  ++ D I+++T+I    R   
Sbjct: 668 KDSGFTPSLTT-YNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGR 726

Query: 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
             EA   F  M   GL PD +TY+  +  YA      E + + +  + +G KP+   ++ 
Sbjct: 727 MKEASRIFAEMKDFGLAPDVITYNTFIASYASDSMFIEAIDVVKYMIKNGCKPNQNTYNS 786

Query: 298 L 298
           L
Sbjct: 787 L 787


>gi|356540307|ref|XP_003538631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Glycine max]
          Length = 804

 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 101/426 (23%), Positives = 193/426 (45%), Gaps = 6/426 (1%)

Query: 166 FWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITY 225
            ++++   F  +K +   P + + YN  +      R+ Q   ++  EM +N     ++TY
Sbjct: 279 LYEEAVHLFQQMKLEGFTP-DKVTYNALLDVFGKSRRPQEAMKVLQEMEANGFSPTSVTY 337

Query: 226 STIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVA 285
           +++I+   +  L +EA++   +M   G+ PD  TY+ +L  + K+GK +  + ++    A
Sbjct: 338 NSLISAYAKGGLLEEALDLKTQMVHKGIKPDVFTYTTLLSGFEKAGKDDFAIQVFLEMRA 397

Query: 286 SGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGL 345
            G KP+   F+ L KM G  G +  +  V  ++K     P++V +NTLL   G+ G    
Sbjct: 398 VGCKPNICTFNALIKMHGNRGKFAEMMKVFDDIKLCNCSPDIVTWNTLLAVFGQNGMDSQ 457

Query: 346 ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405
              +F EM  +G   +  T   LI  Y +      A+ +++ M E     D   YN +L 
Sbjct: 458 VSGIFKEMKRAGFVAERDTFNTLISAYSRCGSFDQAMAVYKSMLEAGVVPDLSTYNAVLA 517

Query: 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
             A  GL E++E++  +M+    CKP+  SY+++L+ Y +G  ++      EE+    V 
Sbjct: 518 ALARGGLWEQSEKVLAEME-DGRCKPNELSYSSLLHAYANGKEIERMNAFAEEIYSGSVE 576

Query: 466 INVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKV 525
            + +    L+    K+  + +  R F     RG+ PD      +LS+    +      ++
Sbjct: 577 THAVLLKTLVLVNSKSDLLIETERAFLELRRRGISPDITTLNAMLSIYGRKQMVAKAHEI 636

Query: 526 ITCLQQA--NPKLVAFLNL--IEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICR 581
           +  + +    P L  + +L  +   S  F+  +E  R V++      R  +   +   CR
Sbjct: 637 LNFMHETRFTPSLTTYNSLMYMYSRSENFQKSEEILREVLEKGMKPDRISYNTVIYAYCR 696

Query: 582 NRNLNE 587
           N  + E
Sbjct: 697 NGRMKE 702



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 106/452 (23%), Positives = 193/452 (42%), Gaps = 50/452 (11%)

Query: 145 ITEIPHQPTRENALLILNSLKFWQK---SYFFFNWIKSQN----LFPMETIFYNVTMKSL 197
           +++ PH  +  + L I+ +L F  K   +   F+W+++ N    LF    I   V +K L
Sbjct: 113 LSDHPHPAS--DILGIIKALGFSNKCDLALAVFHWVRTNNSNTNLFSSSAI--PVIIKIL 168

Query: 198 RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDE 257
               +      L   + ++ + +D   Y+ +I        + +A+  F +M + G  P  
Sbjct: 169 GKAGRVSSAASLLLALQNDGVHIDVYAYTCLINAYSSSGRYRDAVNLFNKMQQDGCNPTL 228

Query: 258 VTYSAILDVYAKSGK------------------------------------VEEVLSLYE 281
           +TY+ +L+VY K G                                      EE + L++
Sbjct: 229 ITYNVVLNVYGKMGMPWSNVTALVEAMRSRGVAPDLYTYNTLISCCRRGSLYEEAVHLFQ 288

Query: 282 RGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG 341
           +    G+ PD + ++ L  +FG+S        VLQEM++ G  P  V YN+L+ A  K G
Sbjct: 289 QMKLEGFTPDKVTYNALLDVFGKSRRPQEAMKVLQEMEANGFSPTSVTYNSLISAYAKGG 348

Query: 342 KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYN 401
               A  L  +MV  G+ PD  T T L+  + KA     A++++  MR      +   +N
Sbjct: 349 LLEEALDLKTQMVHKGIKPDVFTYTTLLSGFEKAGKDDFAIQVFLEMRAVGCKPNICTFN 408

Query: 402 TLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461
            L+ M  + G   E  ++F+D+KL + C PD  ++  +L ++G  G       +F+EM  
Sbjct: 409 ALIKMHGNRGKFAEMMKVFDDIKLCN-CSPDIVTWNTLLAVFGQNGMDSQVSGIFKEMKR 467

Query: 462 LGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSED 521
            G          LI    +    D  + V+   ++ GV PD      +L+ ++     E 
Sbjct: 468 AGFVAERDTFNTLISAYSRCGSFDQAMAVYKSMLEAGVVPDLSTYNAVLAALARGGLWEQ 527

Query: 522 VGKVITCLQ--QANPKLVAFLNLIEDNSTGFE 551
             KV+  ++  +  P  +++ +L+   + G E
Sbjct: 528 SEKVLAEMEDGRCKPNELSYSSLLHAYANGKE 559



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 136/282 (48%), Gaps = 7/282 (2%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG---KVEEVLSLY 280
           T++T+I+   RC  FD+A+  ++ M + G++PD  TY+A+L   A+ G   + E+VL+  
Sbjct: 476 TFNTLISAYSRCGSFDQAMAVYKSMLEAGVVPDLSTYNAVLAALARGGLWEQSEKVLAEM 535

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
           E G     KP+ +++S L   +    + + +    +E+ S  V+ + V+  TL+    K+
Sbjct: 536 EDGRC---KPNELSYSSLLHAYANGKEIERMNAFAEEIYSGSVETHAVLLKTLVLVNSKS 592

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
                    F E+   G++PD  TL A++ IYG+ +    A E+   M E ++      Y
Sbjct: 593 DLLIETERAFLELRRRGISPDITTLNAMLSIYGRKQMVAKAHEILNFMHETRFTPSLTTY 652

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           N+L+ M +     +++E +  ++ L    KPD  SY  ++  Y   G +  A  +F EM 
Sbjct: 653 NSLMYMYSRSENFQKSEEILREV-LEKGMKPDRISYNTVIYAYCRNGRMKEASRIFSEMK 711

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           +  +  +V+     I          + + V    I +G KPD
Sbjct: 712 DSALVPDVVTYNTFIATYAADSMFAEAIDVVRYMIKQGCKPD 753



 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/279 (21%), Positives = 121/279 (43%), Gaps = 7/279 (2%)

Query: 148 IPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIE 207
           +P   T    L  L     W++S      ++     P E + Y+  + +   G++ + + 
Sbjct: 506 VPDLSTYNAVLAALARGGLWEQSEKVLAEMEDGRCKPNE-LSYSSLLHAYANGKEIERMN 564

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
             A E+ S  +E   +   T++    + +L  E    F  + + G+ PD  T +A+L +Y
Sbjct: 565 AFAEEIYSGSVETHAVLLKTLVLVNSKSDLLIETERAFLELRRRGISPDITTLNAMLSIY 624

Query: 268 AKS---GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQ 324
            +     K  E+L+       + + P    ++ L  M+  S ++     +L+E+   G++
Sbjct: 625 GRKQMVAKAHEILNFMHE---TRFTPSLTTYNSLMYMYSRSENFQKSEEILREVLEKGMK 681

Query: 325 PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384
           P+ + YNT++ A  + G+   A  +F EM +S L PD  T    I  Y       +A+++
Sbjct: 682 PDRISYNTVIYAYCRNGRMKEASRIFSEMKDSALVPDVVTYNTFIATYAADSMFAEAIDV 741

Query: 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
              M +     D   YN++++    +    EA    +++
Sbjct: 742 VRYMIKQGCKPDQNTYNSIVDWYCKLDQRHEANSFVKNL 780


>gi|357122161|ref|XP_003562784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Brachypodium distachyon]
          Length = 791

 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 168/317 (52%), Gaps = 2/317 (0%)

Query: 188 IFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
           + YNV +    +    ++ +  L + M  + I LD  TY+T+I+C +R  L+ EA + F+
Sbjct: 212 VTYNVVLHVYSKIAVPWKEVLALVDSMRKDGIPLDRYTYNTLISCCRRRALYKEAAKVFD 271

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
            M   G  PD+VT +++LDVY K+ + +E + + +     G  P  + ++ L   + + G
Sbjct: 272 EMRAAGFEPDKVTLNSLLDVYGKARRYDEAIGVLKEMEQGGCPPSVVTYNSLISSYVKDG 331

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
             +    + +EM+  G++P+++ Y TL+  + +AGK   A   ++EM+ +G  P+  T  
Sbjct: 332 LLEEATQLKEEMEVKGIEPDVITYTTLVSGLDRAGKIDAAIGTYNEMLRNGCKPNLCTYN 391

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
           ALIK++G      + + +++ +R   +  D + +NTLL +    GL  E   +F++MK S
Sbjct: 392 ALIKLHGVRGKFPEMMIVFDEIRSAGFVPDVVTWNTLLAVFGQNGLDTEVSGVFKEMKKS 451

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
            Y  P+  +Y ++++ Y   G  D A+E+++ M E G+  ++     ++  L +  R + 
Sbjct: 452 GYV-PERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIHPDISTYNAVLSALARGGRWEQ 510

Query: 487 LVRVFGVSIDRGVKPDD 503
             ++F    +   +PD+
Sbjct: 511 AEKLFAEMENLDSRPDE 527



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 85/356 (23%), Positives = 167/356 (46%), Gaps = 3/356 (0%)

Query: 156 NALLILNSLKF-WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMV 214
           NAL+ L+ ++  + +    F+ I+S    P + + +N  +           +  +  EM 
Sbjct: 391 NALIKLHGVRGKFPEMMIVFDEIRSAGFVP-DVVTWNTLLAVFGQNGLDTEVSGVFKEMK 449

Query: 215 SNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVE 274
            +    +  TY ++I+   RC LFD+A+E ++RM + G+ PD  TY+A+L   A+ G+ E
Sbjct: 450 KSGYVPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIHPDISTYNAVLSALARGGRWE 509

Query: 275 EVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLL 334
           +   L+        +PD +++S L   +  +   D ++ + +++ +  ++ +  +  TL+
Sbjct: 510 QAEKLFAEMENLDSRPDELSYSSLLHAYANAKKLDKMKSLSEDIYAERIESHNGLVKTLV 569

Query: 335 EAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWP 394
               K          F E+     + D   L A+I IYGK    K   E+   M+E+   
Sbjct: 570 LVNSKVNNLSDTEKAFLELRRRRCSLDINVLNAMISIYGKNGMVKKVEEILSLMKESSIN 629

Query: 395 MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIE 454
           +    YN+L++M + +G  E+ E +  ++K S   +PD YSY  M+  YG  G +  A  
Sbjct: 630 LSTATYNSLMHMYSRLGDCEKCENILTEIK-SSRARPDRYSYNTMIYAYGRKGQMKEASR 688

Query: 455 LFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
           LF EM   G+  +++     ++        ++ + +    +  G KP++R    +L
Sbjct: 689 LFSEMKCSGLVPDIVTYNIFVKSYVANSMFEEAIDLVRYMVTHGCKPNERTYNTIL 744



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/321 (24%), Positives = 153/321 (47%), Gaps = 2/321 (0%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           W++     + ++   + P++   YN  +   R    ++   ++ +EM +   E D +T +
Sbjct: 228 WKEVLALVDSMRKDGI-PLDRYTYNTLISCCRRRALYKEAAKVFDEMRAAGFEPDKVTLN 286

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           +++    +   +DEAI   + M + G  P  VTY++++  Y K G +EE   L E     
Sbjct: 287 SLLDVYGKARRYDEAIGVLKEMEQGGCPPSVVTYNSLISSYVKDGLLEEATQLKEEMEVK 346

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +PD I ++ L      +G  D       EM   G +PNL  YN L++  G  GK    
Sbjct: 347 GIEPDVITYTTLVSGLDRAGKIDAAIGTYNEMLRNGCKPNLCTYNALIKLHGVRGKFPEM 406

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
             +FDE+  +G  PD  T   L+ ++G+     +   +++ M+++ +  +   Y +L++ 
Sbjct: 407 MIVFDEIRSAGFVPDVVTWNTLLAVFGQNGLDTEVSGVFKEMKKSGYVPERDTYVSLISS 466

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
            +  GL ++A  +++ M +     PD  +Y A+L+    GG  + A +LF EM  L    
Sbjct: 467 YSRCGLFDQAMEIYKRM-IEAGIHPDISTYNAVLSALARGGRWEQAEKLFAEMENLDSRP 525

Query: 467 NVMGCTCLIQCLGKARRIDDL 487
           + +  + L+     A+++D +
Sbjct: 526 DELSYSSLLHAYANAKKLDKM 546



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 78/313 (24%), Positives = 156/313 (49%), Gaps = 6/313 (1%)

Query: 255 PDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE-SGDYDGIRY 313
           PD   Y+A++   +++ +  + ++++ R VA+G  P  + ++V+  ++ + +  +  +  
Sbjct: 174 PDASAYTALISALSRASRFRDAVAVFRRMVANGVCPALVTYNVVLHVYSKIAVPWKEVLA 233

Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYG 373
           ++  M+  G+  +   YNTL+    +      A  +FDEM  +G  PD+ TL +L+ +YG
Sbjct: 234 LVDSMRKDGIPLDRYTYNTLISCCRRRALYKEAAKVFDEMRAAGFEPDKVTLNSLLDVYG 293

Query: 374 KARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDN 433
           KAR   +A+ + + M +   P   + YN+L++     GL+EEA +L E+M++    +PD 
Sbjct: 294 KARRYDEAIGVLKEMEQGGCPPSVVTYNSLISSYVKDGLLEEATQLKEEMEVKG-IEPDV 352

Query: 434 YSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGV 493
            +YT +++     G +D AI  + EM   G   N+     LI+  G   +  +++ VF  
Sbjct: 353 ITYTTLVSGLDRAGKIDAAIGTYNEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMIVFDE 412

Query: 494 SIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAFLNLIEDNSTG-- 549
               G  PD      LL+V        +V  V   ++++   P+   +++LI   S    
Sbjct: 413 IRSAGFVPDVVTWNTLLAVFGQNGLDTEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGL 472

Query: 550 FENIKEEFRNVIK 562
           F+   E ++ +I+
Sbjct: 473 FDQAMEIYKRMIE 485



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 128/280 (45%), Gaps = 36/280 (12%)

Query: 180 QNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFD 239
           Q   P   + YN  + S       +   QL  EM    IE D ITY+T+++   R    D
Sbjct: 310 QGGCPPSVVTYNSLISSYVKDGLLEEATQLKEEMEVKGIEPDVITYTTLVSGLDRAGKID 369

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
            AI  +  M + G  P+  TY+A++ ++   GK  E++ +++   ++G+ PD + ++ L 
Sbjct: 370 AAIGTYNEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMIVFDEIRSAGFVPDVVTWNTLL 429

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
            +FG++G    +  V +EMK  G  P    Y +L+ +  + G    A  ++  M+E+G+ 
Sbjct: 430 AVFGQNGLDTEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIH 489

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
           PD  T                                   YN +L+  A  G  E+AE+L
Sbjct: 490 PDIST-----------------------------------YNAVLSALARGGRWEQAEKL 514

Query: 420 FEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           F +M+  D  +PD  SY+++L+ Y +   +D    L E++
Sbjct: 515 FAEMENLD-SRPDELSYSSLLHAYANAKKLDKMKSLSEDI 553



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 81/200 (40%), Gaps = 17/200 (8%)

Query: 116 SYNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTRENALLILNSLKFWQKSYFFFN 175
           S+N  V+ L L   K+N+  +TE+AFL        +  R    L +N L      Y    
Sbjct: 560 SHNGLVKTLVLVNSKVNNLSDTEKAFL--------ELRRRRCSLDINVLNAMISIYGKNG 611

Query: 176 WIK---------SQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
            +K          ++   + T  YN  M         +  E +  E+ S+    D  +Y+
Sbjct: 612 MVKKVEEILSLMKESSINLSTATYNSLMHMYSRLGDCEKCENILTEIKSSRARPDRYSYN 671

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T+I    R     EA   F  M  +GL+PD VTY+  +  Y  +   EE + L    V  
Sbjct: 672 TMIYAYGRKGQMKEASRLFSEMKCSGLVPDIVTYNIFVKSYVANSMFEEAIDLVRYMVTH 731

Query: 287 GWKPDPIAFSVLGKMFGESG 306
           G KP+   ++ + + +   G
Sbjct: 732 GCKPNERTYNTILQEYCSHG 751



 Score = 44.7 bits (104), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 5/101 (4%)

Query: 177 IKSQNLFPMETIFYNVTMKSLRFGRQFQLIE--QLANEMVSNEIELDNITYSTIITCAKR 234
           IKS    P +   YN  + +  +GR+ Q+ E  +L +EM  + +  D +TY+  +     
Sbjct: 658 IKSSRARP-DRYSYNTMIYA--YGRKGQMKEASRLFSEMKCSGLVPDIVTYNIFVKSYVA 714

Query: 235 CNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEE 275
            ++F+EAI+    M   G  P+E TY+ IL  Y   G++ +
Sbjct: 715 NSMFEEAIDLVRYMVTHGCKPNERTYNTILQEYCSHGRIAD 755


>gi|357123295|ref|XP_003563347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Brachypodium distachyon]
          Length = 800

 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 101/365 (27%), Positives = 171/365 (46%), Gaps = 16/365 (4%)

Query: 142 LRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSL-RFG 200
           +RA T + H  + E           ++++   F  +K + + P   + YNV +    R G
Sbjct: 187 VRAYTTVLHALSHEGR---------YERALELFAELKREGVAPTH-VMYNVMLDVYGRMG 236

Query: 201 RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTY 260
           R +  I  +  EM +  +E D  T ST+I    R  L DEA+ +FE +   G +P  VTY
Sbjct: 237 RSWPQIVAMLEEMRAAGVEPDGFTASTVIAACGRDGLVDEAVAFFEDLKSRGHVPCVVTY 296

Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
           +A+L V+ K+G   E L + +    SG KPD + ++ L   +  +G Y+     L  M S
Sbjct: 297 NALLQVFGKAGNYMEALRVLKEMEESGCKPDAVTYNELAGSYARAGFYEEAAKCLDTMVS 356

Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380
            G+ PN   YNT++ A G AGK   A +LFD M ++G  P   T   ++ + GK      
Sbjct: 357 KGILPNAFTYNTIMTAYGNAGKVDEALALFDWMKKNGFIPYVNTYNLILGMLGKKSRFNV 416

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS--DYCKPDNYSYTA 438
            LE+   M  +    + + +NT+L +C   G+     R+ E MK    + C+    ++  
Sbjct: 417 MLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEGYVTRVLERMKSCGVELCRD---TFNT 473

Query: 439 MLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRG 498
           +++ YG  G+  NA ++++EM+  G    +     L+  L +         +     + G
Sbjct: 474 LISAYGRCGSRANAFKMYDEMTAAGFTPCLTTYNALLSVLSRQGDWTAAQSIINKMKNEG 533

Query: 499 VKPDD 503
            KP+D
Sbjct: 534 FKPND 538



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 143/318 (44%), Gaps = 6/318 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVS---NEIELDNI 223
           W+ +     W++++           V     R G Q   +  L +EM+        LD  
Sbjct: 130 WEWALALVRWVRAEGGAADAAALEMVVRTLAREG-QHDAVCDLLDEMLPLPPGSPGLDVR 188

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKV-EEVLSLYER 282
            Y+T++        ++ A+E F  + + G+ P  V Y+ +LDVY + G+   +++++ E 
Sbjct: 189 AYTTVLHALSHEGRYERALELFAELKREGVAPTHVMYNVMLDVYGRMGRSWPQIVAMLEE 248

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
             A+G +PD    S +    G  G  D      +++KS G  P +V YN LL+  GKAG 
Sbjct: 249 MRAAGVEPDGFTASTVIAACGRDGLVDEAVAFFEDLKSRGHVPCVVTYNALLQVFGKAGN 308

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
              A  +  EM ESG  PD  T   L   Y +A + ++A +  + M       +   YNT
Sbjct: 309 YMEALRVLKEMEESGCKPDAVTYNELAGSYARAGFYEEAAKCLDTMVSKGILPNAFTYNT 368

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
           ++    + G V+EA  LF+ MK + +  P   +Y  +L + G     +  +E+  EMS  
Sbjct: 369 IMTAYGNAGKVDEALALFDWMKKNGFI-PYVNTYNLILGMLGKKSRFNVMLEMLGEMSRS 427

Query: 463 GVAINVMGCTCLIQCLGK 480
           G   N +    ++   GK
Sbjct: 428 GCTPNRVTWNTMLAVCGK 445



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 126/258 (48%), Gaps = 2/258 (0%)

Query: 256 DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG-DYDGIRYV 314
           D   Y+ +L   +  G+ E  L L+      G  P  + ++V+  ++G  G  +  I  +
Sbjct: 186 DVRAYTTVLHALSHEGRYERALELFAELKREGVAPTHVMYNVMLDVYGRMGRSWPQIVAM 245

Query: 315 LQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK 374
           L+EM++ GV+P+    +T++ A G+ G    A + F+++   G  P   T  AL++++GK
Sbjct: 246 LEEMRAAGVEPDGFTASTVIAACGRDGLVDEAVAFFEDLKSRGHVPCVVTYNALLQVFGK 305

Query: 375 ARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNY 434
           A    +AL + + M E+    D + YN L    A  G  EEA +  + M +S    P+ +
Sbjct: 306 AGNYMEALRVLKEMEESGCKPDAVTYNELAGSYARAGFYEEAAKCLDTM-VSKGILPNAF 364

Query: 435 SYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVS 494
           +Y  ++  YG+ G VD A+ LF+ M + G    V     ++  LGK  R + ++ + G  
Sbjct: 365 TYNTIMTAYGNAGKVDEALALFDWMKKNGFIPYVNTYNLILGMLGKKSRFNVMLEMLGEM 424

Query: 495 IDRGVKPDDRLCGCLLSV 512
              G  P+      +L+V
Sbjct: 425 SRSGCTPNRVTWNTMLAV 442



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 94/411 (22%), Positives = 172/411 (41%), Gaps = 78/411 (18%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLA--NEMVSNEIELDNITYSTIIT 230
           FF  +KS+   P   + YN  ++   FG+    +E L    EM  +  + D +TY+ +  
Sbjct: 280 FFEDLKSRGHVPC-VVTYNALLQV--FGKAGNYMEALRVLKEMEESGCKPDAVTYNELAG 336

Query: 231 CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
              R   ++EA +  + M   G++P+  TY+ I+  Y  +GKV+E L+L++    +G+ P
Sbjct: 337 SYARAGFYEEAAKCLDTMVSKGILPNAFTYNTIMTAYGNAGKVDEALALFDWMKKNGFIP 396

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGL----- 345
               ++++  M G+   ++ +  +L EM   G  PN V +NT+L   GK G  G      
Sbjct: 397 YVNTYNLILGMLGKKSRFNVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEGYVTRVL 456

Query: 346 ------------------------------ARSLFDEMVESGLTPDEKTLTALIKIYGKA 375
                                         A  ++DEM  +G TP   T           
Sbjct: 457 ERMKSCGVELCRDTFNTLISAYGRCGSRANAFKMYDEMTAAGFTPCLTT----------- 505

Query: 376 RWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYS 435
                                   YN LL++ +  G    A+ +   MK   + KP++ S
Sbjct: 506 ------------------------YNALLSVLSRQGDWTAAQSIINKMKNEGF-KPNDMS 540

Query: 436 YTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSI 495
           Y+ +L  +  GGN      + +E+ E  V  + +    L+    K RR++ + R F   +
Sbjct: 541 YSLLLQCHAKGGNAAGIEAIEKEVYEGTVFPSWVILRTLVISNFKCRRLEGIERAFQEVM 600

Query: 496 DRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQA--NPKLVAFLNLIE 544
            RG KPD  +   +LS+ +        G++   ++Q   +P L+ + ++++
Sbjct: 601 ARGHKPDLVIFNSMLSMYAKNGMYRKAGEMFDSIKQGGLSPDLITYNSMMD 651



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 141/297 (47%), Gaps = 3/297 (1%)

Query: 206 IEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
           + ++   M S  +EL   T++T+I+   RC     A + ++ M   G  P   TY+A+L 
Sbjct: 452 VTRVLERMKSCGVELCRDTFNTLISAYGRCGSRANAFKMYDEMTAAGFTPCLTTYNALLS 511

Query: 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325
           V ++ G      S+  +    G+KP+ +++S+L +   + G+  GI  + +E+    V P
Sbjct: 512 VLSRQGDWTAAQSIINKMKNEGFKPNDMSYSLLLQCHAKGGNAAGIEAIEKEVYEGTVFP 571

Query: 326 NLVVYNTLLEAMGKAGK-PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384
           + V+  TL+ +  K  +  G+ R+ F E++  G  PD     +++ +Y K    + A E+
Sbjct: 572 SWVILRTLVISNFKCRRLEGIERA-FQEVMARGHKPDLVIFNSMLSMYAKNGMYRKAGEM 630

Query: 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYG 444
           ++ +++     D I YN++++M A      EAE++ + +K S   KPD  SY  ++N + 
Sbjct: 631 FDSIKQGGLSPDLITYNSMMDMYAKSNESWEAEKILKRLKTSQ-LKPDVVSYNTVMNGFC 689

Query: 445 SGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
             G +  A  +  EM   GV   V+    L+          +   V    I R + P
Sbjct: 690 KQGLIKEAQRILSEMIADGVRPCVVTYHTLVGGYASREMFSEAREVVSYMIQRNLSP 746



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/330 (20%), Positives = 146/330 (44%), Gaps = 4/330 (1%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIIT-C 231
            F+W+K     P     YN+ +  L    +F ++ ++  EM  +    + +T++T++  C
Sbjct: 385 LFDWMKKNGFIPYVNT-YNLILGMLGKKSRFNVMLEMLGEMSRSGCTPNRVTWNTMLAVC 443

Query: 232 AKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291
            KR  +        ERM   G+     T++ ++  Y + G       +Y+   A+G+ P 
Sbjct: 444 GKR-GMEGYVTRVLERMKSCGVELCRDTFNTLISAYGRCGSRANAFKMYDEMTAAGFTPC 502

Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
              ++ L  +    GD+   + ++ +MK+ G +PN + Y+ LL+   K G      ++  
Sbjct: 503 LTTYNALLSVLSRQGDWTAAQSIINKMKNEGFKPNDMSYSLLLQCHAKGGNAAGIEAIEK 562

Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411
           E+ E  + P    L  L+    K R  +     ++ +       D +++N++L+M A  G
Sbjct: 563 EVYEGTVFPSWVILRTLVISNFKCRRLEGIERAFQEVMARGHKPDLVIFNSMLSMYAKNG 622

Query: 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC 471
           +  +A  +F+ +K      PD  +Y +M+++Y        A ++ + +    +  +V+  
Sbjct: 623 MYRKAGEMFDSIKQGG-LSPDLITYNSMMDMYAKSNESWEAEKILKRLKTSQLKPDVVSY 681

Query: 472 TCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
             ++    K   I +  R+    I  GV+P
Sbjct: 682 NTVMNGFCKQGLIKEAQRILSEMIADGVRP 711



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 114/222 (51%), Gaps = 1/222 (0%)

Query: 182 LFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEA 241
           +FP   I   + + + +  R+ + IE+   E+++   + D + ++++++   +  ++ +A
Sbjct: 569 VFPSWVILRTLVISNFKC-RRLEGIERAFQEVMARGHKPDLVIFNSMLSMYAKNGMYRKA 627

Query: 242 IEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKM 301
            E F+ + + GL PD +TY++++D+YAKS +  E   + +R   S  KPD ++++ +   
Sbjct: 628 GEMFDSIKQGGLSPDLITYNSMMDMYAKSNESWEAEKILKRLKTSQLKPDVVSYNTVMNG 687

Query: 302 FGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD 361
           F + G     + +L EM + GV+P +V Y+TL+           AR +   M++  L+P 
Sbjct: 688 FCKQGLIKEAQRILSEMIADGVRPCVVTYHTLVGGYASREMFSEAREVVSYMIQRNLSPM 747

Query: 362 EKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
           E T   ++  Y KA+   +A      + E     D  L +TL
Sbjct: 748 ELTYRRVVDSYCKAKRFDEARGFLYEIAETDRNSDQKLLSTL 789



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/257 (22%), Positives = 116/257 (45%), Gaps = 3/257 (1%)

Query: 153 TRENALL-ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLAN 211
           T  NALL +L+    W  +    N +K++   P + + Y++ ++    G     IE +  
Sbjct: 504 TTYNALLSVLSRQGDWTAAQSIINKMKNEGFKPND-MSYSLLLQCHAKGGNAAGIEAIEK 562

Query: 212 EMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG 271
           E+    +    +   T++    +C   +     F+ +   G  PD V ++++L +YAK+G
Sbjct: 563 EVYEGTVFPSWVILRTLVISNFKCRRLEGIERAFQEVMARGHKPDLVIFNSMLSMYAKNG 622

Query: 272 KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYN 331
              +   +++     G  PD I ++ +  M+ +S +      +L+ +K+  ++P++V YN
Sbjct: 623 MYRKAGEMFDSIKQGGLSPDLITYNSMMDMYAKSNESWEAEKILKRLKTSQLKPDVVSYN 682

Query: 332 TLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM-RE 390
           T++    K G    A+ +  EM+  G+ P   T   L+  Y       +A E+   M + 
Sbjct: 683 TVMNGFCKQGLIKEAQRILSEMIADGVRPCVVTYHTLVGGYASREMFSEAREVVSYMIQR 742

Query: 391 NKWPMDFILYNTLLNMC 407
           N  PM+      + + C
Sbjct: 743 NLSPMELTYRRVVDSYC 759



 Score = 43.5 bits (101), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 8/137 (5%)

Query: 395 MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNV-DNAI 453
           +D   Y T+L+  +  G  E A  LF ++K  +   P +  Y  ML++YG  G      +
Sbjct: 185 LDVRAYTTVLHALSHEGRYERALELFAELK-REGVAPTHVMYNVMLDVYGRMGRSWPQIV 243

Query: 454 ELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVV 513
            + EEM   GV  +    + +I   G+   +D+ V  F     RG  P      C+++  
Sbjct: 244 AMLEEMRAAGVEPDGFTASTVIAACGRDGLVDEAVAFFEDLKSRGHVP------CVVTYN 297

Query: 514 SLCETSEDVGKVITCLQ 530
           +L +     G  +  L+
Sbjct: 298 ALLQVFGKAGNYMEALR 314


>gi|15242557|ref|NP_195906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181167|sp|Q9LYZ9.1|PP362_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g02860
 gi|7413561|emb|CAB86040.1| putative protein [Arabidopsis thaliana]
 gi|332003145|gb|AED90528.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 819

 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 159/317 (50%), Gaps = 2/317 (0%)

Query: 188 IFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
           I YNV +    + G  +  I  L  +M S+ I  D  TY+T+ITC KR +L  EA + FE
Sbjct: 244 ITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFE 303

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
            M   G   D+VTY+A+LDVY KS + +E + +    V +G+ P  + ++ L   +   G
Sbjct: 304 EMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDG 363

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
             D    +  +M   G +P++  Y TLL    +AGK   A S+F+EM  +G  P+  T  
Sbjct: 364 MLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFN 423

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
           A IK+YG      + +++++ +       D + +NTLL +    G+  E   +F++MK +
Sbjct: 424 AFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRA 483

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
            +  P+  ++  +++ Y   G+ + A+ ++  M + GV  ++     ++  L +    + 
Sbjct: 484 GFV-PERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQ 542

Query: 487 LVRVFGVSIDRGVKPDD 503
             +V     D   KP++
Sbjct: 543 SEKVLAEMEDGRCKPNE 559



 Score =  139 bits (351), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 97/376 (25%), Positives = 184/376 (48%), Gaps = 9/376 (2%)

Query: 194 MKSLRFGRQFQLIEQLANEMVSN---EIELDNITYSTIITCAKRCNLFDEAIEWFERMYK 250
           +K L F ++F L  +  +  +     +  LDN   + II+   +      A   F  + +
Sbjct: 142 LKGLGFHKKFDLALRAFDWFMKQKDYQSMLDNSVVAIIISMLGKEGRVSSAANMFNGLQE 201

Query: 251 TGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD-YD 309
            G   D  +Y++++  +A SG+  E ++++++    G KP  I ++V+  +FG+ G  ++
Sbjct: 202 DGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWN 261

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
            I  ++++MKS G+ P+   YNTL+    +      A  +F+EM  +G + D+ T  AL+
Sbjct: 262 KITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALL 321

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
            +YGK+   K+A+++   M  N +    + YN+L++  A  G+++EA  L   M      
Sbjct: 322 DVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMA-EKGT 380

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
           KPD ++YT +L+ +   G V++A+ +FEEM   G   N+      I+  G   +  ++++
Sbjct: 381 KPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMK 440

Query: 490 VFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAFLNLIEDNS 547
           +F      G+ PD      LL+V        +V  V   +++A   P+   F  LI   S
Sbjct: 441 IFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYS 500

Query: 548 --TGFENIKEEFRNVI 561
               FE     +R ++
Sbjct: 501 RCGSFEQAMTVYRRML 516



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 93/444 (20%), Positives = 176/444 (39%), Gaps = 75/444 (16%)

Query: 183 FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
           F  + + YN  +       + +   ++ NEMV N      +TY+++I+   R  + DEA+
Sbjct: 310 FSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAM 369

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
           E   +M + G  PD  TY+ +L  + ++GKVE  +S++E    +G KP+   F+   KM+
Sbjct: 370 ELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMY 429

Query: 303 GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM--------- 353
           G  G +  +  +  E+   G+ P++V +NTLL   G+ G       +F EM         
Sbjct: 430 GNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPER 489

Query: 354 --------------------------VESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
                                     +++G+TPD  T                       
Sbjct: 490 ETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLST----------------------- 526

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
                       YNT+L   A  G+ E++E++  +M+    CKP+  +Y ++L+ Y +G 
Sbjct: 527 ------------YNTVLAALARGGMWEQSEKVLAEME-DGRCKPNELTYCSLLHAYANGK 573

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCG 507
            +     L EE+    +    +    L+    K   + +  R F    +RG  PD     
Sbjct: 574 EIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLN 633

Query: 508 CLLSVVSLCETSEDVGKVITCLQQAN--PKLVAFLNL--IEDNSTGFENIKEEFRNVIKD 563
            ++S+    +       V+  +++    P +  + +L  +   S  F   +E  R ++  
Sbjct: 634 SMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAK 693

Query: 564 TEVDARRPFCNCLIDICRNRNLNE 587
                   +   +   CRN  + +
Sbjct: 694 GIKPDIISYNTVIYAYCRNTRMRD 717



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 130/285 (45%), Gaps = 13/285 (4%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG---KVEEVLSLY 280
           T++T+I+   RC  F++A+  + RM   G+ PD  TY+ +L   A+ G   + E+VL+  
Sbjct: 491 TFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEM 550

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
           E G     KP+ + +  L   +    +   +  + +E+ S  ++P  V+  TL+    K 
Sbjct: 551 EDGRC---KPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKC 607

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
                A   F E+ E G +PD  TL +++ IYG+ +    A  + + M+E  +      Y
Sbjct: 608 DLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATY 667

Query: 401 NTLLNM---CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE 457
           N+L+ M    AD G  EE  R      L+   KPD  SY  ++  Y     + +A  +F 
Sbjct: 668 NSLMYMHSRSADFGKSEEILREI----LAKGIKPDIISYNTVIYAYCRNTRMRDASRIFS 723

Query: 458 EMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           EM   G+  +V+     I         ++ + V    I  G +P+
Sbjct: 724 EMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPN 768



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 64/283 (22%), Positives = 126/283 (44%), Gaps = 1/283 (0%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           P   T    L  L     W++S      ++     P E + Y   + +   G++  L+  
Sbjct: 522 PDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNE-LTYCSLLHAYANGKEIGLMHS 580

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           LA E+ S  IE   +   T++    +C+L  EA   F  + + G  PD  T ++++ +Y 
Sbjct: 581 LAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYG 640

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           +   V +   + +     G+ P    ++ L  M   S D+     +L+E+ + G++P+++
Sbjct: 641 RRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDII 700

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            YNT++ A  +  +   A  +F EM  SG+ PD  T    I  Y      ++A+ +   M
Sbjct: 701 SYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYM 760

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
            ++    +   YN++++    +   +EA+   ED++  D   P
Sbjct: 761 IKHGCRPNQNTYNSIVDGYCKLNRKDEAKLFVEDLRNLDPHAP 803


>gi|255548407|ref|XP_002515260.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545740|gb|EEF47244.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 878

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 131/577 (22%), Positives = 257/577 (44%), Gaps = 57/577 (9%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           ++K    F+ + S  + P + I +N  +     G  ++   +L + MV   I+ D  TY+
Sbjct: 277 FKKVVEIFDGMLSNGVQP-DRITFNSLLAVCSRGGLWEAARRLFSAMVDKGIDQDIFTYN 335

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++    +    D A E    M    ++P+ VTYS ++D YAK G++++ L+++      
Sbjct: 336 TLLDAVCKGGQMDLAFEIMSEMPTKNILPNVVTYSTMIDGYAKVGRLDDALNMFNEMKFL 395

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G   D ++++ L  ++ + G ++    V +EM++ G++ ++V YN LL   GK  +    
Sbjct: 396 GVGLDRVSYNTLLSVYAKLGRFEQALDVCKEMENAGIRKDVVTYNALLAGYGKQYRYDEV 455

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
           R +F+EM    ++P+  T + LI +Y K    K+A+E++   ++     D +LY+ L++ 
Sbjct: 456 RRVFEEMKRGRVSPNLLTYSTLIDVYSKGGLYKEAMEVFREFKQAGLKADVVLYSALIDA 515

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV-- 464
               GLVE +  L ++M   +  +P+  +Y ++++ +G   +    ++   E + L V  
Sbjct: 516 LCKNGLVESSVTLLDEMT-KEGIRPNVVTYNSIIDAFGRSASAQCVVDDSGETTALQVES 574

Query: 465 --------AINVMGC----TCLIQCLGK-------------ARRIDDLVRVFGVSIDRGV 499
                   AI           +I+  GK              + I  ++ VF    +  +
Sbjct: 575 LSSIVVQEAIESQAADKEDNRIIEIFGKLAAEKACEAKNSGKQEILCILGVFQKMHELKI 634

Query: 500 KPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGF-----ENI- 553
           KP+      +L+  S C++ ED   ++        +L  F N +   + G      EN+ 
Sbjct: 635 KPNVVTFSAILNACSRCDSFEDASMLL-------EELRLFDNQVYGVAHGLLMGYRENVW 687

Query: 554 --KEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLD 611
              +   + +K  +      F N L D+  +      A  ++  G    ++  +      
Sbjct: 688 LQAQSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQVWENI------ 741

Query: 612 EWS---LDVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQLFLAETGTGTHKFSQG---L 665
            WS   LD+  +S GAA+  +  W+  +  IV     LP+L    TG G H    G   L
Sbjct: 742 -WSDSCLDLHLMSSGAARAMVHAWLLNIRSIVFEGHELPKLLSILTGWGKHSKVVGDSAL 800

Query: 666 ATAFASHVNKLAAPFRQSEGKAGCFVATREDLVSWVQ 702
             A  + +  + APFR ++   G F++T   + +W++
Sbjct: 801 RRAVEALLIGMGAPFRLAKCNLGRFISTGSVVAAWLK 837



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/295 (29%), Positives = 152/295 (51%), Gaps = 4/295 (1%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG-KVEEVLSLYER 282
            +S +I+   R    +EAI+ F+ M   GLMP+ VTY+A++D   K G + ++V+ +++ 
Sbjct: 227 AFSALISAYGRSGYCNEAIKVFDSMKSNGLMPNLVTYNAVIDACGKGGVEFKKVVEIFDG 286

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
            +++G +PD I F+ L  +    G ++  R +   M   G+  ++  YNTLL+A+ K G+
Sbjct: 287 MLSNGVQPDRITFNSLLAVCSRGGLWEAARRLFSAMVDKGIDQDIFTYNTLLDAVCKGGQ 346

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
             LA  +  EM    + P+  T + +I  Y K     DAL ++  M+     +D + YNT
Sbjct: 347 MDLAFEIMSEMPTKNILPNVVTYSTMIDGYAKVGRLDDALNMFNEMKFLGVGLDRVSYNT 406

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
           LL++ A +G  E+A  + ++M+ +   + D  +Y A+L  YG     D    +FEEM   
Sbjct: 407 LLSVYAKLGRFEQALDVCKEMENAG-IRKDVVTYNALLAGYGKQYRYDEVRRVFEEMKRG 465

Query: 463 GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCE 517
            V+ N++  + LI    K     + + VF      G+K D  L   L+   +LC+
Sbjct: 466 RVSPNLLTYSTLIDVYSKGGLYKEAMEVFREFKQAGLKADVVLYSALID--ALCK 518



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 156/309 (50%), Gaps = 3/309 (0%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           F+ +KS  L P   + YN  + +  + G +F+ + ++ + M+SN ++ D IT+++++   
Sbjct: 248 FDSMKSNGLMP-NLVTYNAVIDACGKGGVEFKKVVEIFDGMLSNGVQPDRITFNSLLAVC 306

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            R  L++ A   F  M   G+  D  TY+ +LD   K G+++    +          P+ 
Sbjct: 307 SRGGLWEAARRLFSAMVDKGIDQDIFTYNTLLDAVCKGGQMDLAFEIMSEMPTKNILPNV 366

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           + +S +   + + G  D    +  EMK LGV  + V YNTLL    K G+   A  +  E
Sbjct: 367 VTYSTMIDGYAKVGRLDDALNMFNEMKFLGVGLDRVSYNTLLSVYAKLGRFEQALDVCKE 426

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M  +G+  D  T  AL+  YGK     +   ++E M+  +   + + Y+TL+++ +  GL
Sbjct: 427 MENAGIRKDVVTYNALLAGYGKQYRYDEVRRVFEEMKRGRVSPNLLTYSTLIDVYSKGGL 486

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
            +EA  +F + K +   K D   Y+A+++     G V++++ L +EM++ G+  NV+   
Sbjct: 487 YKEAMEVFREFKQAG-LKADVVLYSALIDALCKNGLVESSVTLLDEMTKEGIRPNVVTYN 545

Query: 473 CLIQCLGKA 481
            +I   G++
Sbjct: 546 SIIDAFGRS 554



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 106/399 (26%), Positives = 188/399 (47%), Gaps = 16/399 (4%)

Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
           SA++    + GKVE   ++++  +  G+     AFS L   +G SG  +    V   MKS
Sbjct: 194 SAMISTLGRLGKVELAKAVFDTALKEGYGKTVYAFSALISAYGRSGYCNEAIKVFDSMKS 253

Query: 321 LGVQPNLVVYNTLLEAMGKAG-KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAK 379
            G+ PNLV YN +++A GK G +      +FD M+ +G+ PD  T  +L+ +  +    +
Sbjct: 254 NGLMPNLVTYNAVIDACGKGGVEFKKVVEIFDGMLSNGVQPDRITFNSLLAVCSRGGLWE 313

Query: 380 DALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAM 439
            A  L+  M +     D   YNTLL+     G ++ A  +  +M   +   P+  +Y+ M
Sbjct: 314 AARRLFSAMVDKGIDQDIFTYNTLLDAVCKGGQMDLAFEIMSEMPTKNIL-PNVVTYSTM 372

Query: 440 LNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGV 499
           ++ Y   G +D+A+ +F EM  LGV ++ +    L+    K  R +  + V     + G+
Sbjct: 373 IDGYAKVGRLDDALNMFNEMKFLGVGLDRVSYNTLLSVYAKLGRFEQALDVCKEMENAGI 432

Query: 500 KPDDRLCGCLLSVVSLCETSEDVGKVITCLQQA--NPKLVAFLNLIEDNSTG--FENIKE 555
           + D      LL+        ++V +V   +++   +P L+ +  LI+  S G  ++   E
Sbjct: 433 RKDVVTYNALLAGYGKQYRYDEVRRVFEEMKRGRVSPNLLTYSTLIDVYSKGGLYKEAME 492

Query: 556 EFRNVIKDTEVDARRPFCNCLID-ICRNRNLNERAHELLYLGTLYGLYPGL--HNKTLDE 612
            FR   K   + A     + LID +C+N  L E +  LL   T  G+ P +  +N  +D 
Sbjct: 493 VFRE-FKQAGLKADVVLYSALIDALCKN-GLVESSVTLLDEMTKEGIRPNVVTYNSIIDA 550

Query: 613 WSLDVRSLSV---GAAQTALEEWMWTLAKIVLREEVLPQ 648
           +     +  V       TAL+  + +L+ IV++E +  Q
Sbjct: 551 FGRSASAQCVVDDSGETTALQ--VESLSSIVVQEAIESQ 587


>gi|414868449|tpg|DAA47006.1| TPA: hypothetical protein ZEAMMB73_127498 [Zea mays]
          Length = 870

 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 129/545 (23%), Positives = 244/545 (44%), Gaps = 23/545 (4%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           +F  +    L P    F ++     R G   +    + +EM+      D  TY+T +   
Sbjct: 302 YFRQMLQDGLCPDRKTFNSLLAACSRAG-HLEDARTVFDEMIHLGSGRDIYTYNTFVDAI 360

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +C     A++    M      P+ VTYS ++D ++K  K +E L L E+  +   + D 
Sbjct: 361 CKCGNMGLALQVVLDMEANNAKPNVVTYSTLMDGFSKLEKYDEALKLREKMKSLRIQLDR 420

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           + ++ L  ++ ++G YD I  V +EM+ LG++ + V YN+L+   GK G+  +   L  +
Sbjct: 421 VCYNTLLAIYVKTGKYDEIATVCEEMEKLGIEKDTVTYNSLINGYGKQGRLDMVAFLVQD 480

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M   G+ P   T + LI IY KA    DA  ++   +E+    D +L+++ ++  A  GL
Sbjct: 481 MRAQGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKADVVLFSSFIDTLAKNGL 540

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV-AINVMGC 471
           VE A  L ++M +    KP+  +Y  +++ +G             +M  +GV    V+  
Sbjct: 541 VECALSLLDEM-MKMGIKPNVVTYNTIIDAFGKSKIFTEEDSDIGDMGIVGVYGGQVVRV 599

Query: 472 TCLIQCLGKA------RRIDDL---VRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDV 522
           T  +   G++      RR  +L   + +F   + +GV+P+      +L+  S C + ED 
Sbjct: 600 TNPVIRGGRSATDVRMRRSQELFFILELFQKMVQQGVRPNVVTFSAILNACSRCNSFEDA 659

Query: 523 GKVITCLQQANPKL--VAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDIC 580
             ++  L+  +  +  VA+  L+  +   +   +  F N +   +      F N L D+ 
Sbjct: 660 ALLLEQLRLFDNSVYGVAY-GLLMGHREAWSQARSLF-NQLGRMDSPTSSAFYNALTDVL 717

Query: 581 RNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAKIV 640
            +    + A +++    L G+   +   T  ++ LD+  +S GAAQ  +  W+  +  IV
Sbjct: 718 WHFGQRQGAQQVV----LEGVNRRVWENTWGDFCLDLHLMSCGAAQAMVHAWLLNVRSIV 773

Query: 641 LREEVLPQLFLAETGTGTHKFSQGLAT---AFASHVNKLAAPFRQSEGKAGCFVATREDL 697
                +P+     TG G H    G +T      + +  + APF+      G FV+    +
Sbjct: 774 FEGRAMPEFLSILTGWGKHSKVAGSSTLRRVIEALLLSIGAPFQAERFNIGRFVSPSALV 833

Query: 698 VSWVQ 702
            +W++
Sbjct: 834 SAWLR 838



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 83/282 (29%), Positives = 135/282 (47%), Gaps = 4/282 (1%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG-KVEEVLSLYE 281
             +S +I+   R  L  EA+   E M   GL P  V+Y+A++D   K G  +   L  + 
Sbjct: 245 FAHSALISAYARSGLATEAMGVLESMKGAGLRPTTVSYNAVIDACGKGGVDLRFTLGYFR 304

Query: 282 RGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG 341
           + +  G  PD   F+ L      +G  +  R V  EM  LG   ++  YNT ++A+ K G
Sbjct: 305 QMLQDGLCPDRKTFNSLLAACSRAGHLEDARTVFDEMIHLGSGRDIYTYNTFVDAICKCG 364

Query: 342 KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYN 401
             GLA  +  +M  +   P+  T + L+  + K     +AL+L E+M+  +  +D + YN
Sbjct: 365 NMGLALQVVLDMEANNAKPNVVTYSTLMDGFSKLEKYDEALKLREKMKSLRIQLDRVCYN 424

Query: 402 TLLNMCADIGLVEEAERLFEDM-KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           TLL +    G  +E   + E+M KL    + D  +Y +++N YG  G +D    L ++M 
Sbjct: 425 TLLAIYVKTGKYDEIATVCEEMEKLG--IEKDTVTYNSLINGYGKQGRLDMVAFLVQDMR 482

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
             GVA +V+  + LI    KA    D   V+    + G+K D
Sbjct: 483 AQGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKAD 524



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 129/322 (40%), Gaps = 39/322 (12%)

Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
           +A +    K G+ +     ++ G+A  +     A S L   +  SG       VL+ MK 
Sbjct: 213 TAAIGALGKMGRPDLARRAFDTGIAGSYGNTVFAHSALISAYARSGLATEAMGVLESMKG 272

Query: 321 LGVQPNLVVYNTLLEAMGKAGKP-GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAK 379
            G++P  V YN +++A GK G         F +M++ GL PD KT  +L+    +A   +
Sbjct: 273 AGLRPTTVSYNAVIDACGKGGVDLRFTLGYFRQMLQDGLCPDRKTFNSLLAACSRAGHLE 332

Query: 380 DALELWERMRENKWPMDFILYNTLLNM---CADIGLV----------------------- 413
           DA  +++ M       D   YNT ++    C ++GL                        
Sbjct: 333 DARTVFDEMIHLGSGRDIYTYNTFVDAICKCGNMGLALQVVLDMEANNAKPNVVTYSTLM 392

Query: 414 ---------EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
                    +EA +L E MK S   + D   Y  +L IY   G  D    + EEM +LG+
Sbjct: 393 DGFSKLEKYDEALKLREKMK-SLRIQLDRVCYNTLLAIYVKTGKYDEIATVCEEMEKLGI 451

Query: 465 AINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGK 524
             + +    LI   GK  R+D +  +      +GV P       L+ + S      D   
Sbjct: 452 EKDTVTYNSLINGYGKQGRLDMVAFLVQDMRAQGVAPSVLTYSTLIDIYSKAGMHGDAFN 511

Query: 525 VITCLQQANPK--LVAFLNLIE 544
           V    +++  K  +V F + I+
Sbjct: 512 VYLDFKESGLKADVVLFSSFID 533


>gi|242083798|ref|XP_002442324.1| hypothetical protein SORBIDRAFT_08g018230 [Sorghum bicolor]
 gi|241943017|gb|EES16162.1| hypothetical protein SORBIDRAFT_08g018230 [Sorghum bicolor]
          Length = 647

 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 130/549 (23%), Positives = 249/549 (45%), Gaps = 33/549 (6%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           +F  +    L P    F ++     R G   +    + +EM+      D  TY+T +   
Sbjct: 81  YFRQMLQDGLCPDRKTFNSLLAACSRAG-HLEDARTVFDEMIHLGSGRDIYTYNTFVDAI 139

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +C   + A +    M    + P+ VTYS ++D ++K  K +E L L E+  + G + D 
Sbjct: 140 CKCGNMELATQVVLDMEANNIKPNVVTYSTLMDGFSKLEKYDEALKLREKMKSLGIQLDR 199

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           + ++ L  ++ ++G YD I  V ++M++LG++ + V YN+L+   GK G+  +   L  +
Sbjct: 200 VCYNTLLAIYVKTGKYDEIATVCEDMENLGIEKDTVTYNSLINGYGKQGRLDMVAFLVQD 259

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M   G+ P   T + LI IY KA    DA  ++   +E+    D +L+++ ++  A  GL
Sbjct: 260 MRAQGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKADVVLFSSFIDTLAKNGL 319

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG-- 470
           VE A  L ++M +    KP+  +Y  +++ +G      + I   E+   +G+ + V G  
Sbjct: 320 VECALSLLDEM-IKMGIKPNVVTYNTIIDAFGK-----SKILTEEDPGNMGI-VGVYGGQ 372

Query: 471 ---CTCLIQCLGKA------RRIDDL---VRVFGVSIDRGVKPDDRLCGCLLSVVSLCET 518
               T  +   G++      RR  +L   + +F   + +GV+P+      +L+  S C  
Sbjct: 373 IVRATNPVTRGGRSATDVRMRRSQELFFILELFQKMVQQGVRPNVVTFSAILNACSRCNN 432

Query: 519 SEDVGKVITCLQQANPKL--VAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCL 576
            ED   ++  L+  +  +  VA+  L+  +   +   +  F N +   +      F N L
Sbjct: 433 FEDAALLLEQLRLFDNSVYGVAY-GLLMGHLEAWSQARSLF-NQLGRMDSPTSSAFYNAL 490

Query: 577 IDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTL 636
            D+  +    + A +++    L G+   +   T  ++ LD+  +S GAAQ  +  W+  +
Sbjct: 491 TDVLWHFGQRQGAQQVV----LEGVNRRVWENTWGDFCLDLHLMSCGAAQAMVHAWLLNV 546

Query: 637 AKIVLREEVLPQLFLAETGTGTHKFSQGLAT---AFASHVNKLAAPFRQSEGKAGCFVAT 693
             IV     +P+     TG G H    G +T      + +  + APF+      G FV+ 
Sbjct: 547 RSIVFEGRAMPEFLSILTGWGKHSKIAGSSTLRRVIEALLLSIGAPFQVERFNIGRFVSP 606

Query: 694 REDLVSWVQ 702
              + +W++
Sbjct: 607 SALVAAWLR 615



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 134/281 (47%), Gaps = 2/281 (0%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG-KVEEVLSLYE 281
             +S +I+   R  L  EA+   E M   GL P  V+Y+A++D   K G  +   L  + 
Sbjct: 24  FAHSALISAYARSGLATEAMGVLESMKGAGLRPTTVSYNAVIDACGKGGVDLRFTLGYFR 83

Query: 282 RGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG 341
           + +  G  PD   F+ L      +G  +  R V  EM  LG   ++  YNT ++A+ K G
Sbjct: 84  QMLQDGLCPDRKTFNSLLAACSRAGHLEDARTVFDEMIHLGSGRDIYTYNTFVDAICKCG 143

Query: 342 KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYN 401
              LA  +  +M  + + P+  T + L+  + K     +AL+L E+M+     +D + YN
Sbjct: 144 NMELATQVVLDMEANNIKPNVVTYSTLMDGFSKLEKYDEALKLREKMKSLGIQLDRVCYN 203

Query: 402 TLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461
           TLL +    G  +E   + EDM+ +   + D  +Y +++N YG  G +D    L ++M  
Sbjct: 204 TLLAIYVKTGKYDEIATVCEDME-NLGIEKDTVTYNSLINGYGKQGRLDMVAFLVQDMRA 262

Query: 462 LGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            GVA +V+  + LI    KA    D   V+    + G+K D
Sbjct: 263 QGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKAD 303



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 103/212 (48%), Gaps = 2/212 (0%)

Query: 280 YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
           ++ G+A  +     A S L   +  SG       VL+ MK  G++P  V YN +++A GK
Sbjct: 11  FDSGIADRYGNTVFAHSALISAYARSGLATEAMGVLESMKGAGLRPTTVSYNAVIDACGK 70

Query: 340 AGKP-GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFI 398
            G         F +M++ GL PD KT  +L+    +A   +DA  +++ M       D  
Sbjct: 71  GGVDLRFTLGYFRQMLQDGLCPDRKTFNSLLAACSRAGHLEDARTVFDEMIHLGSGRDIY 130

Query: 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458
            YNT ++     G +E A ++  DM+ ++  KP+  +Y+ +++ +      D A++L E+
Sbjct: 131 TYNTFVDAICKCGNMELATQVVLDME-ANNIKPNVVTYSTLMDGFSKLEKYDEALKLREK 189

Query: 459 MSELGVAINVMGCTCLIQCLGKARRIDDLVRV 490
           M  LG+ ++ +    L+    K  + D++  V
Sbjct: 190 MKSLGIQLDRVCYNTLLAIYVKTGKYDEIATV 221


>gi|297832604|ref|XP_002884184.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330024|gb|EFH60443.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 829

 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 106/376 (28%), Positives = 169/376 (44%), Gaps = 8/376 (2%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLA--NEMVSNEIELDNITYSTIIT 230
           FF  +KS    P  T+ YN  ++   FG+     E L+   EM  N    D++TY+ ++ 
Sbjct: 310 FFAELKSCGYEP-GTVTYNALLQV--FGKAGVYTEALSVLKEMEENNCPADSVTYNELVA 366

Query: 231 CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
              R     EA    E M + G+MP+ +TY+ ++D Y K+GK +E L L+     +G  P
Sbjct: 367 AYARAGFSKEAAVVIEMMTQKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVP 426

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
           +   ++ +  M G+    + +  +L +MKS G  PN   +NT+L   G  G       +F
Sbjct: 427 NTCTYNAVLSMLGKKSRSNEMIKMLCDMKSNGCFPNRATWNTILALCGNKGMDKFVNRVF 486

Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
            EM   G  PD  T   LI  YG+     DA +++  M    +      YN LLN  A  
Sbjct: 487 REMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARK 546

Query: 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG 470
           G     E +  DMK   + KP   SY+ ML  Y  GGN      + E ++E  +  + M 
Sbjct: 547 GDWRSGENVISDMKSKGF-KPTETSYSLMLQCYAKGGNYLGIERIEEGINEGQIFPSWML 605

Query: 471 CTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQ 530
              L+    K R +    R F +    G KPD  +   +LS+ +     +    ++  + 
Sbjct: 606 LRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILQSIH 665

Query: 531 Q--ANPKLVAFLNLIE 544
           +   NP LV + +L++
Sbjct: 666 EDGLNPDLVTYNSLMD 681



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 96/363 (26%), Positives = 171/363 (47%), Gaps = 12/363 (3%)

Query: 142 LRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSL-RFG 200
           +RA T I H  +R            ++K+   F  +K     P   + YNV +    + G
Sbjct: 217 VRAYTTILHAYSRTGK---------YEKAINLFERMKEMGPSPT-LVTYNVILDVFGKMG 266

Query: 201 RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTY 260
           R ++ I  +  EM S  ++ D  T ST+++   R  L  EA ++F  +   G  P  VTY
Sbjct: 267 RSWRKILGVLEEMRSKGLKFDEFTCSTVLSACAREGLLREAKDFFAELKSCGYEPGTVTY 326

Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
           +A+L V+ K+G   E LS+ +    +    D + ++ L   +  +G       V++ M  
Sbjct: 327 NALLQVFGKAGVYTEALSVLKEMEENNCPADSVTYNELVAAYARAGFSKEAAVVIEMMTQ 386

Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380
            GV PN + Y T+++A GKAGK   A  LF  M E+G  P+  T  A++ + GK   + +
Sbjct: 387 KGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSMLGKKSRSNE 446

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
            +++   M+ N    +   +NT+L +C + G+ +   R+F +MK   + +PD  ++  ++
Sbjct: 447 MIKMLCDMKSNGCFPNRATWNTILALCGNKGMDKFVNRVFREMKSCGF-EPDRDTFNTLI 505

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
           + YG  G+  +A +++ EM+  G    V     L+  L +         V      +G K
Sbjct: 506 SAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFK 565

Query: 501 PDD 503
           P +
Sbjct: 566 PTE 568



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 104/378 (27%), Positives = 174/378 (46%), Gaps = 7/378 (1%)

Query: 161 LNSLKFWQKSYFFFNW-IKSQNLFPMETIFYNVTMKSLRFGR--QFQLIEQLANEMVSNE 217
           L+    W+++ F F W + S N   ++   + + +     GR  Q+ +  +L +++   +
Sbjct: 153 LDDSGHWERAVFLFEWLVLSSNSGALKLDHHVIEILVRILGRESQYSVAAKLLDKIPLQD 212

Query: 218 IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKV-EEV 276
             LD   Y+TI+    R   +++AI  FERM + G  P  VTY+ ILDV+ K G+   ++
Sbjct: 213 YMLDVRAYTTILHAYSRTGKYEKAINLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKI 272

Query: 277 LSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA 336
           L + E   + G K D    S +       G     +    E+KS G +P  V YN LL+ 
Sbjct: 273 LGVLEEMRSKGLKFDEFTCSTVLSACAREGLLREAKDFFAELKSCGYEPGTVTYNALLQV 332

Query: 337 MGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMD 396
            GKAG    A S+  EM E+    D  T   L+  Y +A ++K+A  + E M +     +
Sbjct: 333 FGKAGVYTEALSVLKEMEENNCPADSVTYNELVAAYARAGFSKEAAVVIEMMTQKGVMPN 392

Query: 397 FILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELF 456
            I Y T+++     G  +EA +LF  MK +  C P+  +Y A+L++ G     +  I++ 
Sbjct: 393 AITYTTVIDAYGKAGKEDEALKLFYSMKEAG-CVPNTCTYNAVLSMLGKKSRSNEMIKML 451

Query: 457 EEMSELGVAINVMGCTCLIQCLGKARRIDDLV-RVFGVSIDRGVKPDDRLCGCLLSVVSL 515
            +M   G   N      ++   G  + +D  V RVF      G +PD      L+S    
Sbjct: 452 CDMKSNGCFPNRATWNTILALCGN-KGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGR 510

Query: 516 CETSEDVGKVITCLQQAN 533
           C +  D  K+   + +A 
Sbjct: 511 CGSEVDASKMYGEMTRAG 528



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/321 (21%), Positives = 127/321 (39%), Gaps = 37/321 (11%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           F  +KS    P    F  +     R G +     ++  EM          TY+ ++    
Sbjct: 486 FREMKSCGFEPDRDTFNTLISAYGRCGSEVD-ASKMYGEMTRAGFNACVTTYNALLNALA 544

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG------KVEE------------ 275
           R   +         M   G  P E +YS +L  YAK G      ++EE            
Sbjct: 545 RKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIEEGINEGQIFPSWM 604

Query: 276 -------------VLSLYERGVA----SGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEM 318
                         L+  ER        G+KPD + F+ +  +F  +  YD    +LQ +
Sbjct: 605 LLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILQSI 664

Query: 319 KSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWA 378
              G+ P+LV YN+L++   + G+   A  +   + +S L PD  +   +IK + +    
Sbjct: 665 HEDGLNPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRKGLM 724

Query: 379 KDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTA 438
           ++A+ +   M E         YNT ++    +G+  E E + E M  +D C+P+  ++  
Sbjct: 725 QEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMYGEIEDVIECMAKND-CRPNELTFKM 783

Query: 439 MLNIYGSGGNVDNAIELFEEM 459
           +++ Y   G    A++   ++
Sbjct: 784 VVDGYCRAGKYSEAMDFVSKI 804



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 90/172 (52%), Gaps = 6/172 (3%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG---KVEEVL 277
           D + ++++++   R N++D+A    + +++ GL PD VTY++++D+Y + G   K EE+L
Sbjct: 637 DMVIFNSMLSIFTRNNMYDQAEGILQSIHEDGLNPDLVTYNSLMDMYVRRGECWKAEEIL 696

Query: 278 SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
              E+   S  KPD ++++ + K F   G       +L EM   G++P +  YNT +   
Sbjct: 697 KTLEK---SQLKPDLVSYNTVIKGFCRKGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGY 753

Query: 338 GKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMR 389
              G  G    + + M ++   P+E T   ++  Y +A    +A++   +++
Sbjct: 754 TAMGMYGEIEDVIECMAKNDCRPNELTFKMVVDGYCRAGKYSEAMDFVSKIK 805



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 75/343 (21%), Positives = 131/343 (38%), Gaps = 55/343 (16%)

Query: 218 IELDNITYSTI-ITCAKRCNLFDEAIE--------WFERMYKTGLMPDEVTYSAILDVYA 268
           +E++N    ++ + C K   L +  +E        +F+ +    L  D V+    LD   
Sbjct: 98  VEIENERDGSLKLLCKKEVVLVNSIVEQPLPRLSSFFDSVKSELLTTDLVSLVKGLD--- 154

Query: 269 KSGKVEEVLSLYERGVAS----GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQ 324
            SG  E  + L+E  V S      K D     +L ++ G    Y     +L ++      
Sbjct: 155 DSGHWERAVFLFEWLVLSSNSGALKLDHHVIEILVRILGRESQYSVAAKLLDKIPLQDYM 214

Query: 325 PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK-ARWAKDALE 383
            ++  Y T+L A  + GK   A +LF+ M E G +P   T   ++ ++GK  R  +  L 
Sbjct: 215 LDVRAYTTILHAYSRTGKYEKAINLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILG 274

Query: 384 LWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIY 443
           + E MR      D    +T+L+ CA  GL+ EA+  F ++K   Y +P   +Y A+L   
Sbjct: 275 VLEEMRSKGLKFDEFTCSTVLSACAREGLLREAKDFFAELKSCGY-EPGTVTYNALL--- 330

Query: 444 GSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
                                           Q  GKA    + + V     +     D 
Sbjct: 331 --------------------------------QVFGKAGVYTEALSVLKEMEENNCPADS 358

Query: 504 RLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAFLNLIE 544
                L++  +    S++   VI  + Q    P  + +  +I+
Sbjct: 359 VTYNELVAAYARAGFSKEAAVVIEMMTQKGVMPNAITYTTVID 401


>gi|302799124|ref|XP_002981321.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
 gi|300150861|gb|EFJ17509.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
          Length = 457

 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 98/332 (29%), Positives = 155/332 (46%), Gaps = 2/332 (0%)

Query: 171 YFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIIT 230
           Y  +N + +    P  T  Y   ++SL   ++F+    +   M +     +  +YS +I 
Sbjct: 37  YGTYNDMLAAGCVP-NTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIA 95

Query: 231 CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
              R    DEA E    M   G  P+ VTY ++L    K GK++E + L+ R V  G  P
Sbjct: 96  GLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPP 155

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
           D + ++VL   F + GD      + +EM   G  P +  YN+LL    + G+ G  +SLF
Sbjct: 156 DGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLF 215

Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
            +M+  G  P+  T   L+  + K     +A  L+  MR    P D + YNTL+      
Sbjct: 216 KDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSK 275

Query: 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG 470
           G   EA+RL  +M  S    PD  SY  +++ Y   G +D+AI+LF E+ + G+  +   
Sbjct: 276 GKPHEAQRLLREMIRSGV-GPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFS 334

Query: 471 CTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            + +I CL +A ++     VF   I  G  PD
Sbjct: 335 YSTIIDCLCRAGKVGAAFVVFKDMIANGSAPD 366



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 103/428 (24%), Positives = 185/428 (43%), Gaps = 43/428 (10%)

Query: 112 RSTYSYNPRVRDLKLFARKLNDCDNTEEAF--LRAITEIPHQPTRENALLILNSLKFWQK 169
             T SYN  +  L    R    CD+    +  + A   +P+  T    L  L   + +++
Sbjct: 15  HGTLSYNYLLEVLAKSGR----CDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEE 70

Query: 170 SYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTII 229
           +   F  + +Q   P     Y++ +  L  G++     +L NEM+    + + +TY +++
Sbjct: 71  ARSVFRGMAAQGCSP-NVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLL 129

Query: 230 TCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWK 289
           +   +     EA++ F RM   G  PD V Y+ ++D ++K G + E   L+E  +  G  
Sbjct: 130 SGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCI 189

Query: 290 PDPIAFSVLGKMFGESGDYDGIRYVLQ--------------------------------- 316
           P    ++ L   F   G++  ++ + +                                 
Sbjct: 190 PTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRL 249

Query: 317 --EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK 374
             EM+SLG  P++V YNTL+  M   GKP  A+ L  EM+ SG+ PD  +   LI  Y K
Sbjct: 250 FLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSK 309

Query: 375 ARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNY 434
           +     A++L+  + ++    D   Y+T+++     G V  A  +F+DM +++   PD  
Sbjct: 310 SGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDM-IANGSAPDAA 368

Query: 435 SYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVS 494
               ++     G  +  + ELF+ M +      +     L+  L KA+R DD+  +F   
Sbjct: 369 VVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKAKRSDDVCEIFHEL 428

Query: 495 IDRGVKPD 502
            +RG  PD
Sbjct: 429 TERGFSPD 436



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 101/234 (43%), Gaps = 5/234 (2%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTII--T 230
            F  +  Q   P    F N+     + G   +   +L  EM S     D ++Y+T+I   
Sbjct: 214 LFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVE-AHRLFLEMRSLGCPPDVVSYNTLIRGM 272

Query: 231 CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
           C+K      EA      M ++G+ PD V+Y+ ++D Y+KSG ++  + L+     SG +P
Sbjct: 273 CSK--GKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEP 330

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
           D  ++S +      +G       V ++M + G  P+  V   L+  + +  +   +  LF
Sbjct: 331 DAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELF 390

Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
             MV+    P       L+    KA+ + D  E++  + E  +  D  +   +L
Sbjct: 391 QAMVKFECVPLIPEYNLLMYKLCKAKRSDDVCEIFHELTERGFSPDVEISKVIL 444



 Score = 46.6 bits (109), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 3/121 (2%)

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           YN LL + A  G  +     + DM L+  C P+ Y+Y  +L         + A  +F  M
Sbjct: 20  YNYLLEVLAKSGRCDHVYGTYNDM-LAAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGM 78

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETS 519
           +  G + NV   + LI  L + +++D+   +    ID G +P+    G LLS   LC+  
Sbjct: 79  AAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLS--GLCKMG 136

Query: 520 E 520
           +
Sbjct: 137 K 137


>gi|302772597|ref|XP_002969716.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
 gi|300162227|gb|EFJ28840.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
          Length = 457

 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 95/316 (30%), Positives = 149/316 (47%), Gaps = 1/316 (0%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
           T  Y   ++SL   ++F+    +   M +     +  +YS +I    R    DEA E   
Sbjct: 52  TYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLN 111

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
            M   G  P+ VTY ++L    K GK++E + L+ R V  G  PD + ++VL   F + G
Sbjct: 112 EMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKG 171

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
           D      + +EM   G  P +  YN+LL    + G+ G  +SLF +M+  G  P+  T  
Sbjct: 172 DMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFN 231

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
            L+  + K     +A  L+  MR    P D + YNTL+      G   EA+RL  +M  S
Sbjct: 232 NLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRS 291

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
               PD  SY  +++ Y   G +D+AI+LF E+ + G+  +    + +I CL +A ++  
Sbjct: 292 GV-GPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGA 350

Query: 487 LVRVFGVSIDRGVKPD 502
              VF   I  G  PD
Sbjct: 351 AFVVFKDMIANGSAPD 366



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 102/428 (23%), Positives = 184/428 (42%), Gaps = 43/428 (10%)

Query: 112 RSTYSYNPRVRDLKLFARKLNDCDNTEEAF--LRAITEIPHQPTRENALLILNSLKFWQK 169
             T SYN  +  L    R    CD+    +  +     +P+  T    L  L   + +++
Sbjct: 15  HGTLSYNYLLEVLAKSGR----CDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEE 70

Query: 170 SYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTII 229
           +   F  + +Q   P     Y++ +  L  G++     +L NEM+    + + +TY +++
Sbjct: 71  ARSVFRGMAAQGCSP-NVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLL 129

Query: 230 TCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWK 289
           +   +     EA++ F RM   G  PD V Y+ ++D ++K G + E   L+E  +  G  
Sbjct: 130 SGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCI 189

Query: 290 PDPIAFSVLGKMFGESGDYDGIRYVLQ--------------------------------- 316
           P    ++ L   F   G++  ++ + +                                 
Sbjct: 190 PTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRL 249

Query: 317 --EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK 374
             EM+SLG  P++V YNTL+  M   GKP  A+ L  EM+ SG+ PD  +   LI  Y K
Sbjct: 250 FLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSK 309

Query: 375 ARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNY 434
           +     A++L+  + ++    D   Y+T+++     G V  A  +F+DM +++   PD  
Sbjct: 310 SGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDM-IANGSAPDAA 368

Query: 435 SYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVS 494
               ++     G  +  + ELF+ M +      +     L+  L KA+R DD+  +F   
Sbjct: 369 VVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKAKRSDDVCEIFHEL 428

Query: 495 IDRGVKPD 502
            +RG  PD
Sbjct: 429 TERGFSPD 436



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 101/234 (43%), Gaps = 5/234 (2%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTII--T 230
            F  +  Q   P    F N+     + G   +   +L  EM S     D ++Y+T++   
Sbjct: 214 LFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVE-AHRLFLEMRSLGCPPDVVSYNTLMRGM 272

Query: 231 CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
           C+K      EA      M ++G+ PD V+Y+ ++D Y+KSG ++  + L+     SG +P
Sbjct: 273 CSK--GKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEP 330

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
           D  ++S +      +G       V ++M + G  P+  V   L+  + +  +   +  LF
Sbjct: 331 DAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELF 390

Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
             MV+    P       L+    KA+ + D  E++  + E  +  D  +   +L
Sbjct: 391 QAMVKFECVPLIPEYNLLMYKLCKAKRSDDVCEIFHELTERGFSPDVEISKVIL 444



 Score = 46.2 bits (108), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 3/121 (2%)

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           YN LL + A  G  +     + DM L   C P+ Y+Y  +L         + A  +F  M
Sbjct: 20  YNYLLEVLAKSGRCDHVYGTYNDM-LGAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGM 78

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETS 519
           +  G + NV   + LI  L + +++D+   +    ID G +P+    G LLS   LC+  
Sbjct: 79  AAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLS--GLCKMG 136

Query: 520 E 520
           +
Sbjct: 137 K 137


>gi|297806221|ref|XP_002870994.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316831|gb|EFH47253.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 819

 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 158/317 (49%), Gaps = 2/317 (0%)

Query: 188 IFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
           I YNV +    + G  +  I  L  +M S+ I  D  TY+T+ITC KR +L  EA + FE
Sbjct: 244 ITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFE 303

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
            M   G   D+VTY+A+LDVY KS + +E + +      +G+ P  + ++ L   +   G
Sbjct: 304 EMKAAGFSHDKVTYNALLDVYGKSHRPKEAMKVLNEMELNGFSPSIVTYNSLISAYARDG 363

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
             D    +  +M   G +P++  Y TLL    +AGK   A ++F+EM  +G  P+  T  
Sbjct: 364 MLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMNIFEEMRNAGCKPNICTFN 423

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
           A IK+YG      D +++++ +       D + +NTLL +    G+  E   +F++MK +
Sbjct: 424 AFIKMYGNRGKFVDMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRA 483

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
            +  P+  ++  +++ Y   G+ + A+ ++  M + GV  ++     ++  L +    + 
Sbjct: 484 GFV-PERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQ 542

Query: 487 LVRVFGVSIDRGVKPDD 503
             +V     D   KP++
Sbjct: 543 SEKVLAEMEDGRCKPNE 559



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 92/347 (26%), Positives = 172/347 (49%), Gaps = 6/347 (1%)

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
           LDN   + +I+   +      A   F  + + G   D  +Y++++  +A SG+  E +++
Sbjct: 171 LDNSVIAIVISMLGKEGRVSSAANLFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNV 230

Query: 280 YERGVASGWKPDPIAFSVLGKMFGESGD-YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMG 338
           +++    G KP  I ++V+  +FG+ G  ++ I  ++++MKS G+ P+   YNTL+    
Sbjct: 231 FKKMEEEGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCK 290

Query: 339 KAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFI 398
           +      A  +F+EM  +G + D+ T  AL+ +YGK+   K+A+++   M  N +    +
Sbjct: 291 RGSLHQEAAQVFEEMKAAGFSHDKVTYNALLDVYGKSHRPKEAMKVLNEMELNGFSPSIV 350

Query: 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458
            YN+L++  A  G+++EA  L   M      KPD ++YT +L+ +   G V++A+ +FEE
Sbjct: 351 TYNSLISAYARDGMLDEAMELKNQMA-EKGTKPDVFTYTTLLSGFERAGKVESAMNIFEE 409

Query: 459 MSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCET 518
           M   G   N+      I+  G   +  D++++F      G+ PD      LL+V      
Sbjct: 410 MRNAGCKPNICTFNAFIKMYGNRGKFVDMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGM 469

Query: 519 SEDVGKVITCLQQAN--PKLVAFLNLIEDNS--TGFENIKEEFRNVI 561
             +V  V   +++A   P+   F  LI   S    FE     +R ++
Sbjct: 470 DSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRML 516



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/318 (27%), Positives = 155/318 (48%), Gaps = 2/318 (0%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L N +  +   LD  +Y+++I+       + EA+  F++M + G  P  +TY+ IL+V+ 
Sbjct: 195 LFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEEGCKPTLITYNVILNVFG 254

Query: 269 KSGKV-EEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
           K G    ++ SL E+  + G  PD   ++ L         +     V +EMK+ G   + 
Sbjct: 255 KMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSHDK 314

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
           V YN LL+  GK+ +P  A  + +EM  +G +P   T  +LI  Y +     +A+EL  +
Sbjct: 315 VTYNALLDVYGKSHRPKEAMKVLNEMELNGFSPSIVTYNSLISAYARDGMLDEAMELKNQ 374

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           M E     D   Y TLL+     G VE A  +FE+M+ +  CKP+  ++ A + +YG+ G
Sbjct: 375 MAEKGTKPDVFTYTTLLSGFERAGKVESAMNIFEEMRNAG-CKPNICTFNAFIKMYGNRG 433

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCG 507
              + +++F+E++  G++ +++    L+   G+     ++  VF      G  P+     
Sbjct: 434 KFVDMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFN 493

Query: 508 CLLSVVSLCETSEDVGKV 525
            L+S  S C + E    V
Sbjct: 494 TLISAYSRCGSFEQAMTV 511



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 153/347 (44%), Gaps = 43/347 (12%)

Query: 181 NLFPMETIFYNVTMKSLRFGRQFQLIE--QLANEMVSNEIELDNITYSTIITCAKRCNLF 238
           N F    + YN  + +  + R   L E  +L N+M     + D  TY+T+++  +R    
Sbjct: 343 NGFSPSIVTYNSLISA--YARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKV 400

Query: 239 DEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
           + A+  FE M   G  P+  T++A + +Y   GK  +++ +++     G  PD + ++ L
Sbjct: 401 ESAMNIFEEMRNAGCKPNICTFNAFIKMYGNRGKFVDMMKIFDEINVCGLSPDIVTWNTL 460

Query: 299 GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
             +FG++G    +  V +EMK  G  P    +NTL+ A  + G    A +++  M+++G+
Sbjct: 461 LAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGV 520

Query: 359 TPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAER 418
           TPD  T                                   YNT+L   A  G+ E++E+
Sbjct: 521 TPDLST-----------------------------------YNTVLAALARGGMWEQSEK 545

Query: 419 LFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL 478
           +  +M+    CKP+  +Y ++L+ Y +G  +     L EE+    +    +    L+   
Sbjct: 546 VLAEME-DGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVC 604

Query: 479 GKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKV 525
            K   + +  R F    +RG  PD      L S+VS+    + VGK 
Sbjct: 605 SKCDLLPEAERAFSELKERGFSPD---ITTLNSMVSIYGRRQMVGKA 648



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 132/285 (46%), Gaps = 13/285 (4%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG---KVEEVLSLY 280
           T++T+I+   RC  F++A+  + RM   G+ PD  TY+ +L   A+ G   + E+VL+  
Sbjct: 491 TFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEM 550

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
           E G     KP+ + +  L   +    +   +  + +E+ S  ++P  V+  TL+    K 
Sbjct: 551 EDGRC---KPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKC 607

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
                A   F E+ E G +PD  TL +++ IYG+ +    A E+ + M+E  +      Y
Sbjct: 608 DLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVGKANEVLDYMKERGFTPSMATY 667

Query: 401 NTLLNM---CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE 457
           N+L+ M    AD G  EE  R      L+   KPD  SY  ++  Y     + +A  +F 
Sbjct: 668 NSLMYMHSRSADFGKSEEILREI----LAKGIKPDIISYNTVIYAYCRNTRMRDASRIFS 723

Query: 458 EMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           EM + G+  +V+     I         ++ + V    I  G +P+
Sbjct: 724 EMRDSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPN 768



 Score = 92.4 bits (228), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 131/287 (45%), Gaps = 9/287 (3%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           P   T    L  L     W++S      ++     P E + Y   + +   G++  L+  
Sbjct: 522 PDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNE-LTYCSLLHAYANGKEIGLMHS 580

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           LA E+ S  IE   +   T++    +C+L  EA   F  + + G  PD  T ++++ +Y 
Sbjct: 581 LAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYG 640

Query: 269 KS---GKVEEVLS-LYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQ 324
           +    GK  EVL  + ERG    + P    ++ L  M   S D+     +L+E+ + G++
Sbjct: 641 RRQMVGKANEVLDYMKERG----FTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIK 696

Query: 325 PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384
           P+++ YNT++ A  +  +   A  +F EM +SG+ PD  T    I  Y      ++A+ +
Sbjct: 697 PDIISYNTVIYAYCRNTRMRDASRIFSEMRDSGIVPDVITYNTFIGSYAADSMFEEAIGV 756

Query: 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
              M ++    +   YN++++    +   +EA+   ED++  D   P
Sbjct: 757 VRYMIKHGCRPNQNTYNSIVDGYCKLNRKDEAKLFVEDLRNLDPHAP 803


>gi|254939549|ref|NP_001157212.1| pentatricopeptide repeat10 [Zea mays]
 gi|218684531|gb|ACL01094.1| chloroplast pentatricopeptide repeat protein 10 [Zea mays]
 gi|223948163|gb|ACN28165.1| unknown [Zea mays]
 gi|413943497|gb|AFW76146.1| pentatricopeptide repeat10 [Zea mays]
          Length = 786

 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 99/370 (26%), Positives = 172/370 (46%), Gaps = 12/370 (3%)

Query: 142 LRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSL-RFG 200
           +RA T + H  +R            ++++   F  ++ Q + P   + YNV +    R G
Sbjct: 174 VRAYTTVLHALSRAGR---------YERALELFAELRRQGVAPT-LVTYNVVLDVYGRMG 223

Query: 201 RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTY 260
           R +  I  L +EM +  +E D  T ST+I    R  L DEA+ +FE +   G  P  VTY
Sbjct: 224 RSWPRIVALLDEMRAAGVEPDGFTASTVIAACCRDGLVDEAVAFFEDLKARGHAPCVVTY 283

Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
           +A+L V+ K+G   E L +      +G +PD + ++ L   +  +G ++     L  M S
Sbjct: 284 NALLQVFGKAGNYTEALRVLGEMEQNGCQPDAVTYNELAGTYARAGFFEEAARCLDTMAS 343

Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380
            G+ PN   YNT++ A G  GK   A +LFD+M ++G  P+  T   ++ + GK      
Sbjct: 344 KGLLPNAFTYNTVMTAYGNVGKVDEALALFDQMKKTGFVPNVNTYNLVLGMLGKKSRFTV 403

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
            LE+   M  +    + + +NT+L +C   G+ +   R+ E M+ S   +    +Y  ++
Sbjct: 404 MLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMR-SCGVELSRDTYNTLI 462

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
             YG  G+  NA +++ EM+  G    +     L+  L +         +      +G K
Sbjct: 463 AAYGRCGSRTNAFKMYNEMTSAGFTPCITTYNALLNVLSRQGDWSTAQSIVSKMRTKGFK 522

Query: 501 PDDRLCGCLL 510
           P+++    LL
Sbjct: 523 PNEQSYSLLL 532



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 133/285 (46%), Gaps = 8/285 (2%)

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKV-EEVLS 278
           LD   Y+T++    R   ++ A+E F  + + G+ P  VTY+ +LDVY + G+    +++
Sbjct: 172 LDVRAYTTVLHALSRAGRYERALELFAELRRQGVAPTLVTYNVVLDVYGRMGRSWPRIVA 231

Query: 279 LYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMG 338
           L +   A+G +PD    S +       G  D      +++K+ G  P +V YN LL+  G
Sbjct: 232 LLDEMRAAGVEPDGFTASTVIAACCRDGLVDEAVAFFEDLKARGHAPCVVTYNALLQVFG 291

Query: 339 KAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFI 398
           KAG    A  +  EM ++G  PD  T   L   Y +A + ++A    + M       +  
Sbjct: 292 KAGNYTEALRVLGEMEQNGCQPDAVTYNELAGTYARAGFFEEAARCLDTMASKGLLPNAF 351

Query: 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458
            YNT++    ++G V+EA  LF+ MK + +  P+  +Y  +L + G        +E+  E
Sbjct: 352 TYNTVMTAYGNVGKVDEALALFDQMKKTGFV-PNVNTYNLVLGMLGKKSRFTVMLEMLGE 410

Query: 459 MSELGVAINVMGCTCLIQCLGKARRIDDLVRVF------GVSIDR 497
           MS  G   N +    ++   GK    D + RV       GV + R
Sbjct: 411 MSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMRSCGVELSR 455



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 89/369 (24%), Positives = 159/369 (43%), Gaps = 41/369 (11%)

Query: 180 QNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFD 239
           QN    + + YN    +      F+   +  + M S  +  +  TY+T++T        D
Sbjct: 308 QNGCQPDAVTYNELAGTYARAGFFEEAARCLDTMASKGLLPNAFTYNTVMTAYGNVGKVD 367

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           EA+  F++M KTG +P+  TY+ +L +  K  +   +L +      SG  P+ + ++ + 
Sbjct: 368 EALALFDQMKKTGFVPNVNTYNLVLGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTML 427

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
            + G+ G  D +  VL+ M+S GV+ +   YNTL+ A G+ G    A  +++EM  +G T
Sbjct: 428 AVCGKRGMEDYVTRVLEGMRSCGVELSRDTYNTLIAAYGRCGSRTNAFKMYNEMTSAGFT 487

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
           P   T                                   YN LLN+ +  G    A+ +
Sbjct: 488 PCITT-----------------------------------YNALLNVLSRQGDWSTAQSI 512

Query: 420 FEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN--VMGCTCLIQC 477
              M+   + KP+  SY+ +L  Y  GGNV     +  E+   G      V+  T +I  
Sbjct: 513 VSKMRTKGF-KPNEQSYSLLLQCYAKGGNVAGIAAIENEVYGSGAVFPSWVILRTLVIAN 571

Query: 478 LGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQA--NPK 535
             K RR+D +   F     RG  PD  +   +LS+ +         +V   ++++  +P 
Sbjct: 572 F-KCRRLDGMETAFQEVKARGYNPDLVIFNSMLSIYAKNGMYSKATEVFDSIKRSGLSPD 630

Query: 536 LVAFLNLIE 544
           L+ + +L++
Sbjct: 631 LITYNSLMD 639



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/319 (24%), Positives = 135/319 (42%), Gaps = 40/319 (12%)

Query: 256 DEVTYSAILDVYAKSGKVEEVLSLY-ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYV 314
           D      ++    + G+ + V +L  E  +  G + D  A++ +      +G Y+    +
Sbjct: 137 DASALEMVVRALGREGQHDAVCALLDETPLPPGSRLDVRAYTTVLHALSRAGRYERALEL 196

Query: 315 LQEMKSLGVQPNLVVYNTLLEAMGKAGK--PGLARSLFDEMVESGLTPDEKTLT------ 366
             E++  GV P LV YN +L+  G+ G+  P +  +L DEM  +G+ PD  T +      
Sbjct: 197 FAELRRQGVAPTLVTYNVVLDVYGRMGRSWPRIV-ALLDEMRAAGVEPDGFTASTVIAAC 255

Query: 367 -----------------------------ALIKIYGKARWAKDALELWERMRENKWPMDF 397
                                        AL++++GKA    +AL +   M +N    D 
Sbjct: 256 CRDGLVDEAVAFFEDLKARGHAPCVVTYNALLQVFGKAGNYTEALRVLGEMEQNGCQPDA 315

Query: 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE 457
           + YN L    A  G  EEA R  + M  S    P+ ++Y  ++  YG+ G VD A+ LF+
Sbjct: 316 VTYNELAGTYARAGFFEEAARCLDTMA-SKGLLPNAFTYNTVMTAYGNVGKVDEALALFD 374

Query: 458 EMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCE 517
           +M + G   NV     ++  LGK  R   ++ + G     G  P+      +L+V     
Sbjct: 375 QMKKTGFVPNVNTYNLVLGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRG 434

Query: 518 TSEDVGKVITCLQQANPKL 536
             + V +V+  ++    +L
Sbjct: 435 MEDYVTRVLEGMRSCGVEL 453



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 110/221 (49%), Gaps = 6/221 (2%)

Query: 179 SQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLF 238
           S  +FP   I   + + + +  R+   +E    E+ +     D + ++++++   +  ++
Sbjct: 554 SGAVFPSWVILRTLVIANFKC-RRLDGMETAFQEVKARGYNPDLVIFNSMLSIYAKNGMY 612

Query: 239 DEAIEWFERMYKTGLMPDEVTYSAILDVYAK---SGKVEEVLSLYERGVASGWKPDPIAF 295
            +A E F+ + ++GL PD +TY++++D+YAK   S + E++L+  +   +   KPD +++
Sbjct: 613 SKATEVFDSIKRSGLSPDLITYNSLMDMYAKCSESWEAEKILN--QLKCSQTMKPDVVSY 670

Query: 296 SVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVE 355
           + +   F + G     + VL EM + G+ P  V Y+TL+           AR +   MV+
Sbjct: 671 NTVINGFCKQGLVKEAQRVLSEMVADGMAPCAVTYHTLVGGYSSLEMFSEAREVIGYMVQ 730

Query: 356 SGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMD 396
            GL P E T   +++ Y +A+  ++A      + E     D
Sbjct: 731 HGLKPMELTYRRVVESYCRAKRFEEARGFLSEVSETDLDFD 771



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/198 (21%), Positives = 92/198 (46%), Gaps = 2/198 (1%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           F  +K++   P + + +N  +        +    ++ + +  + +  D ITY++++    
Sbjct: 584 FQEVKARGYNP-DLVIFNSMLSIYAKNGMYSKATEVFDSIKRSGLSPDLITYNSLMDMYA 642

Query: 234 RCNLFDEAIEWFERMYKTGLM-PDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
           +C+   EA +   ++  +  M PD V+Y+ +++ + K G V+E   +    VA G  P  
Sbjct: 643 KCSESWEAEKILNQLKCSQTMKPDVVSYNTVINGFCKQGLVKEAQRVLSEMVADGMAPCA 702

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           + +  L   +     +   R V+  M   G++P  + Y  ++E+  +A +   AR    E
Sbjct: 703 VTYHTLVGGYSSLEMFSEAREVIGYMVQHGLKPMELTYRRVVESYCRAKRFEEARGFLSE 762

Query: 353 MVESGLTPDEKTLTALIK 370
           + E+ L  D+K L A I+
Sbjct: 763 VSETDLDFDKKALEAYIE 780


>gi|302821741|ref|XP_002992532.1| hypothetical protein SELMODRAFT_135367 [Selaginella moellendorffii]
 gi|300139734|gb|EFJ06470.1| hypothetical protein SELMODRAFT_135367 [Selaginella moellendorffii]
          Length = 759

 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 135/554 (24%), Positives = 249/554 (44%), Gaps = 47/554 (8%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F  +  Q + P + I +N  + +     +++  +++  EM    I  D++TY+T+I   
Sbjct: 211 IFREMLEQGMSP-DRITFNTLISAAGRANRWEECDRIFAEMEERGIARDDVTYNTLIATY 269

Query: 233 KRCNLFDEAIEWFERMYKT-GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291
            R           E M K+ G+ P  +TYS ++D YAK G   E ++L++       +PD
Sbjct: 270 CRGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGYAKLGLAHEAIALFQEMRNQNVEPD 329

Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
            I ++ +  +    G++D    + + M+  G   ++V YN LL++ GK GK   A SL +
Sbjct: 330 GICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKFREAMSLLE 389

Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411
           EM + G +P+  T +ALI  Y K  + +DA+ L++ +++     D +LY+TL++ C   G
Sbjct: 390 EMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDVKKAGLQPDVVLYSTLVDGCCKNG 449

Query: 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC 471
             +EA  L E+M   +  +P+  +Y ++L+ YG        + + +   +L   + +   
Sbjct: 450 SPDEALALLEEMA-DNGIRPNVITYNSLLDAYGR-----QCLMVRKTFPKLRFFL-LPRV 502

Query: 472 TCLI--------QCLGKARRIDDLV----RVFGVSIDRGVKPDDRLCGCLLSVVSLCETS 519
           T L+        Q L   ++   LV    RVF      GVKP+      +L+  S C + 
Sbjct: 503 TMLLKPSMQDDQQSLVDPKQKQALVLAAARVFREMAKNGVKPNVVTFSSILNACSHCASV 562

Query: 520 EDVGKVITCLQQANPKLVAFLNLIEDNSTGF--------ENIKEEFRNVIKDTEVDARRP 571
           ED   ++  ++  + ++    + +     GF        E +  E   +  +T V     
Sbjct: 563 EDASNLLEAMRVFDGRVYGVTHGL---LMGFRIRVWRDAETLFNELTTLGHNTAV----A 615

Query: 572 FCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALEE 631
           F N L D+  +    + A +       +      H++   ++ LD+  +SVG+AQ  L  
Sbjct: 616 FYNALTDVLWHFEQAQAAKDRHVWDKAW-----WHSE--QQFFLDLHFMSVGSAQAMLHL 668

Query: 632 WMWTLAKIVL-REEVLPQLFLAETGTGTHKFSQG---LATAFASHVNKLAAPFRQSEGKA 687
           W+  + K +  R  VLP+     TG G H    G   +  A  +H+ ++ +PF       
Sbjct: 669 WLLYIRKFLCQRRSVLPKYMSILTGWGKHSKVPGESAVKRAVEAHLLEMNSPFHVWGNNE 728

Query: 688 GCFVATREDLVSWV 701
           G  V     +  W+
Sbjct: 729 GRLVCAGYQVQGWL 742



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 136/285 (47%), Gaps = 4/285 (1%)

Query: 219 ELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS 278
           + D +T STII+   R    D A   F+R    G   +   YS+++  Y +SGK+ + + 
Sbjct: 118 QWDKVT-STIISSLGRLGRSDWAQLIFDRAVGAGFGNNVFVYSSLICAYGRSGKLAKAVE 176

Query: 279 LYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMG 338
           ++E  +    KP+ + ++ +     + GDY     + +EM   G+ P+ + +NTL+ A G
Sbjct: 177 IFE-AMKVVCKPNLVVYNAVIDACSKGGDYPTALRIFREMLEQGMSPDRITFNTLISAAG 235

Query: 339 KAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM-RENKWPMDF 397
           +A +      +F EM E G+  D+ T   LI  Y +         L E M + +      
Sbjct: 236 RANRWEECDRIFAEMEERGIARDDVTYNTLIATYCRGGQMHLGAALMETMAKSSGIEPSV 295

Query: 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE 457
           I Y+T+++  A +GL  EA  LF++M+ +   +PD   Y  M++I+   GN D A  +  
Sbjct: 296 ITYSTMIDGYAKLGLAHEAIALFQEMR-NQNVEPDGICYNTMVDIHARLGNFDEAHSIRR 354

Query: 458 EMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            M E G A +++    L+   GK  +  + + +      RG  P+
Sbjct: 355 AMEEAGFAKDIVTYNALLDSYGKQGKFREAMSLLEEMKQRGASPN 399



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/218 (22%), Positives = 94/218 (43%), Gaps = 43/218 (19%)

Query: 324 QPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE--------------------- 362
           +P   V ++ ++ M K+  P L  +L D++    L PD+                     
Sbjct: 47  KPIKPVLSSAVKHMIKSPSPSLMPALLDQVSAHLLGPDDLPFIVRELGHSGQWEKVVKSF 106

Query: 363 -----------------KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405
                             T+ + +   G++ WA+    +++R     +  +  +Y++L+ 
Sbjct: 107 DWMVLQQNLRSQWDKVTSTIISSLGRLGRSDWAQ---LIFDRAVGAGFGNNVFVYSSLIC 163

Query: 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
                G + +A  +FE MK+   CKP+   Y A+++    GG+   A+ +F EM E G++
Sbjct: 164 AYGRSGKLAKAVEIFEAMKV--VCKPNLVVYNAVIDACSKGGDYPTALRIFREMLEQGMS 221

Query: 466 INVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
            + +    LI   G+A R ++  R+F    +RG+  DD
Sbjct: 222 PDRITFNTLISAAGRANRWEECDRIFAEMEERGIARDD 259


>gi|125537564|gb|EAY84052.1| hypothetical protein OsI_39281 [Oryza sativa Indica Group]
          Length = 762

 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 103/434 (23%), Positives = 191/434 (44%), Gaps = 42/434 (9%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           FF W+K Q  F  +   Y   +  L   RQF  + +L +EM S             + C 
Sbjct: 352 FFQWLKRQPGFKHDGHSYTTMIGILGQARQFGTMRKLLDEMNS-------------VHCK 398

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
                                 P  VTY+ I+  Y ++  + E + ++E    +G++PD 
Sbjct: 399 ----------------------PTVVTYNRIIHAYGRANYLREAVKVFEEMQKAGYEPDR 436

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           + +  L  +  + G  +    +   M+ +G+ P+   Y+ ++  +GK G    A  LF E
Sbjct: 437 VTYCTLIDIHAKGGYLEVAMDLYTRMQEVGLSPDTFTYSAMVNCLGKGGHLAAAYKLFCE 496

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           MVE+G TP+  T   +I +  KAR  ++ ++L++ M+   +  D I Y+ ++ +    G 
Sbjct: 497 MVENGCTPNLVTYNIMIALQAKARNYENVVKLYKDMQVAGFRPDKITYSIVMEVLGHCGH 556

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
           ++EAE +F +M+  D+  PD   Y  +++++G  GNVD A+  +  M + G+  NV  C 
Sbjct: 557 LDEAEAVFIEMR-HDWA-PDEPVYGLLVDLWGKAGNVDKALGWYHAMLQDGLQPNVPTCN 614

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQA 532
            L+    K  R  D   V    + +G+ P  +    LLS  +  E    +G     +   
Sbjct: 615 SLLSAFLKINRFQDAYSVLQNMLAQGLVPSLQTYTLLLSCCT--EAQAQMGLCCQLMAIT 672

Query: 533 NPKLVAFLNLIEDNSTGFENIKEE---FRNVIKDTEVDARRPFCNCLIDICRNRNLNERA 589
                 FL  + D   G +N+++    F +++   + +++R   + +ID      L E A
Sbjct: 673 GHPAHMFLLYLPDAEPGGQNVRDHTRYFLDMMHSEDRESKRGLMDAVIDFLHKSGLKEEA 732

Query: 590 HELLYLGTLYGLYP 603
             +  +     +YP
Sbjct: 733 GFIWEVAAQRNVYP 746



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 134/284 (47%), Gaps = 5/284 (1%)

Query: 330 YNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMR 389
           Y T++  +G+A + G  R L DEM      P   T   +I  YG+A + ++A++++E M+
Sbjct: 369 YTTMIGILGQARQFGTMRKLLDEMNSVHCKPTVVTYNRIIHAYGRANYLREAVKVFEEMQ 428

Query: 390 ENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNV 449
           +  +  D + Y TL+++ A  G +E A  L+  M+      PD ++Y+AM+N  G GG++
Sbjct: 429 KAGYEPDRVTYCTLIDIHAKGGYLEVAMDLYTRMQEVG-LSPDTFTYSAMVNCLGKGGHL 487

Query: 450 DNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCL 509
             A +LF EM E G   N++    +I    KAR  +++V+++      G +PD      +
Sbjct: 488 AAAYKLFCEMVENGCTPNLVTYNIMIALQAKARNYENVVKLYKDMQVAGFRPDKITYSIV 547

Query: 510 LSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEE---FRNVIKDTEV 566
           + V+  C   ++   V   ++           L+ D      N+ +    +  +++D  +
Sbjct: 548 MEVLGHCGHLDEAEAVFIEMRHDWAPDEPVYGLLVDLWGKAGNVDKALGWYHAMLQDG-L 606

Query: 567 DARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTL 610
               P CN L+      N  + A+ +L      GL P L   TL
Sbjct: 607 QPNVPTCNSLLSAFLKINRFQDAYSVLQNMLAQGLVPSLQTYTL 650


>gi|225429339|ref|XP_002269471.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02860
           [Vitis vinifera]
          Length = 811

 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 95/383 (24%), Positives = 177/383 (46%), Gaps = 5/383 (1%)

Query: 183 FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
           F  + + YN  +      R+ +   ++  EM  N      +TY+++I+   R  L ++A+
Sbjct: 302 FSPDKVTYNALLDVYGKSRRSKEAMEVLQEMEGNGCPPSIVTYNSLISAYARDGLLEDAL 361

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
           E   +M + G+ PD  TY+ +L  + K+GK +  + ++E     G KP+   F+ L KM 
Sbjct: 362 ELKNQMVEKGIKPDVFTYTTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALIKMH 421

Query: 303 GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
           G  G +  +  V +++K+    P++V +NTLL   G+ G       +F EM  +G  P+ 
Sbjct: 422 GNRGKFTEMMKVFEDIKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPER 481

Query: 363 KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED 422
            T   LI  Y +      A+ +++RM E     D   YN +L   A  GL +++E++  +
Sbjct: 482 DTFNTLISSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAALARGGLWKQSEKVLAE 541

Query: 423 MKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKAR 482
           MK    CKP+  +Y ++L+ Y +G  ++    L EE+    +    +    L+    K  
Sbjct: 542 MK-DGRCKPNELTYCSLLHAYANGKEIERMCALAEEIYSGIIEPRAVLLKTLVLVNSKCD 600

Query: 483 RIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAF- 539
            + +  R F     RG  PD      ++S+    +      +++ C+++    P L  + 
Sbjct: 601 LLMETERAFLELRQRGFSPDITTLNAMVSIYGRRQMVAKANEILDCMKRGGFTPSLTTYN 660

Query: 540 -LNLIEDNSTGFENIKEEFRNVI 561
            L  +   S  FE  +E  R ++
Sbjct: 661 SLMYMYSRSANFERSEEILREIL 683



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 87/317 (27%), Positives = 162/317 (51%), Gaps = 2/317 (0%)

Query: 188 IFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
           I YNV +    + G  +  +  L + M S  I  D+ TY+T+I+C +R NL++EA    +
Sbjct: 236 ITYNVILNVYGKMGMPWNKMVGLVDRMKSAGIAPDSYTYNTLISCCRRGNLYEEAAGVLK 295

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
            M   G  PD+VTY+A+LDVY KS + +E + + +    +G  P  + ++ L   +   G
Sbjct: 296 EMKLAGFSPDKVTYNALLDVYGKSRRSKEAMEVLQEMEGNGCPPSIVTYNSLISAYARDG 355

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
             +    +  +M   G++P++  Y TLL    KAGK   A  +F+EM   G  P+  T  
Sbjct: 356 LLEDALELKNQMVEKGIKPDVFTYTTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFN 415

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
           ALIK++G      + ++++E ++  +   D + +NTLL++    G+  E   +F++MK +
Sbjct: 416 ALIKMHGNRGKFTEMMKVFEDIKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRA 475

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
            +  P+  ++  +++ Y   G+ D A+ +++ M E GV  ++     ++  L +      
Sbjct: 476 GFV-PERDTFNTLISSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAALARGGLWKQ 534

Query: 487 LVRVFGVSIDRGVKPDD 503
             +V     D   KP++
Sbjct: 535 SEKVLAEMKDGRCKPNE 551



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/392 (25%), Positives = 185/392 (47%), Gaps = 9/392 (2%)

Query: 156 NALLILNSLKFWQK---SYFFFNWIKS--QNLFPMETIFYNVTMKSLRFGRQFQLIEQLA 210
           + L I+  L F++K   +   F W+++  ++   +      V +  L  G +      L 
Sbjct: 129 DVLGIVKGLGFYKKCDTALRVFEWVRNRKESELLLNGSIIAVIISILGKGGRVSAAASLL 188

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
           + +  +  ++D   Y+++IT       + EA+  F++M + G  P  +TY+ IL+VY K 
Sbjct: 189 HNLCKDGFDVDVYAYTSMITAFTSNGRYREAVMVFKKMEEVGCKPTLITYNVILNVYGKM 248

Query: 271 GKV-EEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVV 329
           G    +++ L +R  ++G  PD   ++ L         Y+    VL+EMK  G  P+ V 
Sbjct: 249 GMPWNKMVGLVDRMKSAGIAPDSYTYNTLISCCRRGNLYEEAAGVLKEMKLAGFSPDKVT 308

Query: 330 YNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMR 389
           YN LL+  GK+ +   A  +  EM  +G  P   T  +LI  Y +    +DALEL  +M 
Sbjct: 309 YNALLDVYGKSRRSKEAMEVLQEMEGNGCPPSIVTYNSLISAYARDGLLEDALELKNQMV 368

Query: 390 ENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNV 449
           E     D   Y TLL+     G  + A ++FE+M+ ++ CKP+  ++ A++ ++G+ G  
Sbjct: 369 EKGIKPDVFTYTTLLSGFEKAGKDKAAVQIFEEMR-NEGCKPNICTFNALIKMHGNRGKF 427

Query: 450 DNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCL 509
              +++FE++     + +++    L+   G+     ++  VF      G  P+      L
Sbjct: 428 TEMMKVFEDIKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTL 487

Query: 510 LSVVSLCETSEDVGKVITCLQQA--NPKLVAF 539
           +S  S C + +    V   + +A  NP L ++
Sbjct: 488 ISSYSRCGSFDQAMAVYKRMLEAGVNPDLSSY 519



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 93/353 (26%), Positives = 154/353 (43%), Gaps = 39/353 (11%)

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
           K+C+      EW     ++ L+ +    + I+ +  K G+V    SL       G+  D 
Sbjct: 141 KKCDTALRVFEWVRNRKESELLLNGSIIAVIISILGKGGRVSAAASLLHNLCKDGFDVDV 200

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP-----GL-- 345
            A++ +   F  +G Y     V ++M+ +G +P L+ YN +L   GK G P     GL  
Sbjct: 201 YAYTSMITAFTSNGRYREAVMVFKKMEEVGCKPTLITYNVILNVYGKMGMPWNKMVGLVD 260

Query: 346 -----------------------------ARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
                                        A  +  EM  +G +PD+ T  AL+ +YGK+R
Sbjct: 261 RMKSAGIAPDSYTYNTLISCCRRGNLYEEAAGVLKEMKLAGFSPDKVTYNALLDVYGKSR 320

Query: 377 WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY 436
            +K+A+E+ + M  N  P   + YN+L++  A  GL+E+A  L   M +    KPD ++Y
Sbjct: 321 RSKEAMEVLQEMEGNGCPPSIVTYNSLISAYARDGLLEDALELKNQM-VEKGIKPDVFTY 379

Query: 437 TAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496
           T +L+ +   G    A+++FEEM   G   N+     LI+  G   +  ++++VF     
Sbjct: 380 TTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALIKMHGNRGKFTEMMKVFEDIKT 439

Query: 497 RGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAFLNLIEDNS 547
               PD      LLSV        +V  V   +++A   P+   F  LI   S
Sbjct: 440 FQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYS 492



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 134/282 (47%), Gaps = 7/282 (2%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG---KVEEVLSLY 280
           T++T+I+   RC  FD+A+  ++RM + G+ PD  +Y+A+L   A+ G   + E+VL+  
Sbjct: 483 TFNTLISSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAALARGGLWKQSEKVLAEM 542

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
           + G     KP+ + +  L   +    + + +  + +E+ S  ++P  V+  TL+    K 
Sbjct: 543 KDGRC---KPNELTYCSLLHAYANGKEIERMCALAEEIYSGIIEPRAVLLKTLVLVNSKC 599

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
                    F E+ + G +PD  TL A++ IYG+ +    A E+ + M+   +      Y
Sbjct: 600 DLLMETERAFLELRQRGFSPDITTLNAMVSIYGRRQMVAKANEILDCMKRGGFTPSLTTY 659

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           N+L+ M +     E +E +  ++ L+   +PD  SY  ++  Y   G + +A  +  EM 
Sbjct: 660 NSLMYMYSRSANFERSEEILREI-LAKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEMR 718

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           E G A +++     I          + + V    I  G KP+
Sbjct: 719 ESGPAPDIITYNTFIASYAADSMFVEAIDVVCYMIKHGCKPN 760



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/265 (23%), Positives = 123/265 (46%), Gaps = 7/265 (2%)

Query: 166 FWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITY 225
            W++S      +K     P E + Y   + +   G++ + +  LA E+ S  IE   +  
Sbjct: 531 LWKQSEKVLAEMKDGRCKPNE-LTYCSLLHAYANGKEIERMCALAEEIYSGIIEPRAVLL 589

Query: 226 STIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS---GKVEEVLSLYER 282
            T++    +C+L  E    F  + + G  PD  T +A++ +Y +     K  E+L   +R
Sbjct: 590 KTLVLVNSKCDLLMETERAFLELRQRGFSPDITTLNAMVSIYGRRQMVAKANEILDCMKR 649

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
           G   G+ P    ++ L  M+  S +++    +L+E+ + G++P+++ YNT++ A  + G+
Sbjct: 650 G---GFTPSLTTYNSLMYMYSRSANFERSEEILREILAKGIRPDIISYNTVIYAYCRNGR 706

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
              A  +  EM ESG  PD  T    I  Y       +A+++   M ++    +   YN+
Sbjct: 707 MRDASRVLSEMRESGPAPDIITYNTFIASYAADSMFVEAIDVVCYMIKHGCKPNQSTYNS 766

Query: 403 LLNMCADIGLVEEAERLFEDMKLSD 427
           +++    +   +EA     +++  D
Sbjct: 767 IVDWYCKLNRRDEASMFVNNLRKLD 791



 Score = 45.4 bits (106), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 73/185 (39%), Gaps = 6/185 (3%)

Query: 119 PRVRDLKLFARKLNDCD---NTEEAFL--RAITEIPHQPTRENALLILNSLKFWQKSYFF 173
           PR   LK      + CD    TE AFL  R     P   T    + I    +   K+   
Sbjct: 584 PRAVLLKTLVLVNSKCDLLMETERAFLELRQRGFSPDITTLNAMVSIYGRRQMVAKANEI 643

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
            + +K     P  T  YN  M        F+  E++  E+++  I  D I+Y+T+I    
Sbjct: 644 LDCMKRGGFTPSLTT-YNSLMYMYSRSANFERSEEILREILAKGIRPDIISYNTVIYAYC 702

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
           R     +A      M ++G  PD +TY+  +  YA      E + +    +  G KP+  
Sbjct: 703 RNGRMRDASRVLSEMRESGPAPDIITYNTFIASYAADSMFVEAIDVVCYMIKHGCKPNQS 762

Query: 294 AFSVL 298
            ++ +
Sbjct: 763 TYNSI 767


>gi|302816960|ref|XP_002990157.1| hypothetical protein SELMODRAFT_131102 [Selaginella moellendorffii]
 gi|300142012|gb|EFJ08717.1| hypothetical protein SELMODRAFT_131102 [Selaginella moellendorffii]
          Length = 760

 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 135/554 (24%), Positives = 249/554 (44%), Gaps = 47/554 (8%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F  +  Q + P + I +N  + +     +++  +++  EM    I  D++TY+T+I   
Sbjct: 212 IFREMLEQGMSP-DRITFNTLISAAGRANRWEECDRIFAEMEERGIARDDVTYNTLIATY 270

Query: 233 KRCNLFDEAIEWFERMYKT-GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291
            R           E M K+ G+ P  +TYS ++D YAK G   E ++L++       +PD
Sbjct: 271 CRGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGYAKLGLAHEAIALFQEMRNQNVEPD 330

Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
            I ++ +  +    G++D    + + M+  G   ++V YN LL++ GK GK   A SL +
Sbjct: 331 GICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKFREAMSLLE 390

Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411
           EM + G +P+  T +ALI  Y K  + +DA+ L++ +++     D +LY+TL++ C   G
Sbjct: 391 EMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDVKKAGLQPDVVLYSTLVDGCCKNG 450

Query: 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC 471
             +EA  L E+M   +  +P+  +Y ++L+ YG        + + +   +L   + +   
Sbjct: 451 SPDEALALLEEMA-DNGIRPNVITYNSLLDAYGR-----QCLMVRKNFPKLRFFL-LPRV 503

Query: 472 TCLI--------QCLGKARRIDDLV----RVFGVSIDRGVKPDDRLCGCLLSVVSLCETS 519
           T L+        Q L   ++   LV    RVF      GVKP+      +L+  S C + 
Sbjct: 504 TMLLKPSVDYDQQSLVDPKQKQALVLAAARVFREMAKNGVKPNVVTFSSILNACSHCASV 563

Query: 520 EDVGKVITCLQQANPKLVAFLNLIEDNSTGF--------ENIKEEFRNVIKDTEVDARRP 571
           ED   ++  ++  + ++    + +     GF        E +  E   +  +T V     
Sbjct: 564 EDASSLLEAMRVFDGRVYGVTHGL---LMGFRIRVWRDAETLFNELTTLGHNTAV----A 616

Query: 572 FCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALEE 631
           F N L D+  +    + A +       +      H++   ++ LD+  +SVG+AQ  L  
Sbjct: 617 FYNALTDVLWHFEQAKAAKDRHVWDKAW-----WHSE--QQFFLDLHFMSVGSAQAMLHL 669

Query: 632 WMWTLAKIVL-REEVLPQLFLAETGTGTHKFSQG---LATAFASHVNKLAAPFRQSEGKA 687
           W+  + K +  R  VLP+     TG G H    G   +  A  +H+ ++ +PF       
Sbjct: 670 WLLYIRKFLCQRRSVLPKYMSILTGWGKHSKVPGESAVKRAVEAHLLEMNSPFHVWGNNE 729

Query: 688 GCFVATREDLVSWV 701
           G  V     +  W+
Sbjct: 730 GRLVCAGYQVQGWL 743



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 136/285 (47%), Gaps = 4/285 (1%)

Query: 219 ELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS 278
           + D +T STII+   R    D A   F+R    G   +   YS+++  Y +SGK+ + + 
Sbjct: 119 QWDKVT-STIISSLGRLGRSDWAQLIFDRAVGAGFGNNVFVYSSLICAYGRSGKLAKAVE 177

Query: 279 LYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMG 338
           ++E  +    KP+ + ++ +     + GDY     + +EM   G+ P+ + +NTL+ A G
Sbjct: 178 IFE-AMKVVCKPNLVVYNAVIDACSKGGDYPTALRIFREMLEQGMSPDRITFNTLISAAG 236

Query: 339 KAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM-RENKWPMDF 397
           +A +      +F EM E G+  D+ T   LI  Y +         L E M + +      
Sbjct: 237 RANRWEECDRIFAEMEERGIARDDVTYNTLIATYCRGGQMHLGAALMETMAKSSGIEPSV 296

Query: 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE 457
           I Y+T+++  A +GL  EA  LF++M+ +   +PD   Y  M++I+   GN D A  +  
Sbjct: 297 ITYSTMIDGYAKLGLAHEAIALFQEMR-NQNVEPDGICYNTMVDIHARLGNFDEAHSIRR 355

Query: 458 EMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            M E G A +++    L+   GK  +  + + +      RG  P+
Sbjct: 356 AMEEAGFAKDIVTYNALLDSYGKQGKFREAMSLLEEMKQRGASPN 400



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/218 (22%), Positives = 94/218 (43%), Gaps = 43/218 (19%)

Query: 324 QPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE--------------------- 362
           +P   V ++ ++ M K+  P L  +L D++    L PD+                     
Sbjct: 48  KPIKPVLSSAVKHMIKSPSPSLMPALLDQVSAHLLGPDDLPFIVRELGHSGQWEKVVKSF 107

Query: 363 -----------------KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405
                             T+ + +   G++ WA+    +++R     +  +  +Y++L+ 
Sbjct: 108 DWMVLQQNLRSQWDKVTSTIISSLGRLGRSDWAQ---LIFDRAVGAGFGNNVFVYSSLIC 164

Query: 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
                G + +A  +FE MK+   CKP+   Y A+++    GG+   A+ +F EM E G++
Sbjct: 165 AYGRSGKLAKAVEIFEAMKV--VCKPNLVVYNAVIDACSKGGDYPTALRIFREMLEQGMS 222

Query: 466 INVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
            + +    LI   G+A R ++  R+F    +RG+  DD
Sbjct: 223 PDRITFNTLISAAGRANRWEECDRIFAEMEERGIARDD 260


>gi|357462685|ref|XP_003601624.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355490672|gb|AES71875.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 684

 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 102/346 (29%), Positives = 170/346 (49%), Gaps = 4/346 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           WQ+S    +W+     +      YNV ++++   +Q+QL   L +EM+   +  D  TYS
Sbjct: 140 WQRSLAILDWMNEIAQYSPSLNVYNVVIRNVLRAKQWQLAHGLFDEMLQKGLSPDKYTYS 199

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T+IT   +  LFD +  W ++M +  +  D V YS ++++  K     + +S++     S
Sbjct: 200 TLITHFSKQGLFDSSFFWLQQMERDNVSGDLVLYSNLIELSRKLCDYSKAISIFNALKGS 259

Query: 287 G-WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGL 345
           G   PD IA +++  ++G++  +   R +LQEM+  GV P+   Y+TLL       K   
Sbjct: 260 GNIVPDLIACNMMISVYGKAKLFREARLLLQEMRDNGVNPSTASYSTLLAIYVDNQKFVE 319

Query: 346 ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405
           A SLF EM E     D  T   +I +YG+ +  K+A   +  MR+     + + YNT+L 
Sbjct: 320 AVSLFSEMNEVECPIDLTTCNIMIDVYGQLQMIKEADCFFWGMRKMGIEPNVVSYNTVLR 379

Query: 406 MCADIGLVEEAERLFEDMKLSDYCKPDN-YSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
           +  + GL  EA  LF  M++     P N  +Y  M++IYG     D A  L +EM   G+
Sbjct: 380 VYGEAGLFGEAVHLFSLMQMKGV--PQNVVTYNTMISIYGKSLEHDKATNLIQEMQSRGI 437

Query: 465 AINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
             N +  + +I    KA ++D    +F      GVK D+ L   ++
Sbjct: 438 QPNAITYSTIISIWEKAGKLDRAAMLFHKLRTSGVKIDEILYQTMI 483



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 90/346 (26%), Positives = 164/346 (47%), Gaps = 7/346 (2%)

Query: 167 WQKSYFFFNWIK-SQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITY 225
           + K+   FN +K S N+ P + I  N+ +      + F+    L  EM  N +     +Y
Sbjct: 246 YSKAISIFNALKGSGNIVP-DLIACNMMISVYGKAKLFREARLLLQEMRDNGVNPSTASY 304

Query: 226 STIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVA 285
           ST++        F EA+  F  M +     D  T + ++DVY +   ++E    +     
Sbjct: 305 STLLAIYVDNQKFVEAVSLFSEMNEVECPIDLTTCNIMIDVYGQLQMIKEADCFFWGMRK 364

Query: 286 SGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGL 345
            G +P+ ++++ + +++GE+G +    ++   M+  GV  N+V YNT++   GK+ +   
Sbjct: 365 MGIEPNVVSYNTVLRVYGEAGLFGEAVHLFSLMQMKGVPQNVVTYNTMISIYGKSLEHDK 424

Query: 346 ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405
           A +L  EM   G+ P+  T + +I I+ KA     A  L+ ++R +   +D ILY T++ 
Sbjct: 425 ATNLIQEMQSRGIQPNAITYSTIISIWEKAGKLDRAAMLFHKLRTSGVKIDEILYQTMIV 484

Query: 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
                GLV  A+RL  ++K     +PDN S    + I    G VD A+ +F +  + G  
Sbjct: 485 AYQKAGLVAHAKRLLNELK-----QPDNVSRETAITILARAGKVDEAMWVFRQAFDAGEV 539

Query: 466 INVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
            ++    C+I    + R+   +V VF    + G  PD  +   +L+
Sbjct: 540 KDISVFGCIIDIFSRERKYAHVVEVFEKMREVGHFPDSNVIALVLN 585



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 137/293 (46%), Gaps = 8/293 (2%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV---LSLY 280
            Y+ +I    R   +  A   F+ M + GL PD+ TYS ++  ++K G  +     L   
Sbjct: 162 VYNVVIRNVLRAKQWQLAHGLFDEMLQKGLSPDKYTYSTLITHFSKQGLFDSSFFWLQQM 221

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG-VQPNLVVYNTLLEAMGK 339
           ER   SG   D + +S L ++  +  DY     +   +K  G + P+L+  N ++   GK
Sbjct: 222 ERDNVSG---DLVLYSNLIELSRKLCDYSKAISIFNALKGSGNIVPDLIACNMMISVYGK 278

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
           A     AR L  EM ++G+ P   + + L+ IY   +   +A+ L+  M E + P+D   
Sbjct: 279 AKLFREARLLLQEMRDNGVNPSTASYSTLLAIYVDNQKFVEAVSLFSEMNEVECPIDLTT 338

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
            N ++++   + +++EA+  F  M+     +P+  SY  +L +YG  G    A+ LF  M
Sbjct: 339 CNIMIDVYGQLQMIKEADCFFWGMRKMG-IEPNVVSYNTVLRVYGEAGLFGEAVHLFSLM 397

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSV 512
              GV  NV+    +I   GK+   D    +      RG++P+      ++S+
Sbjct: 398 QMKGVPQNVVTYNTMISIYGKSLEHDKATNLIQEMQSRGIQPNAITYSTIISI 450



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 137/300 (45%), Gaps = 5/300 (1%)

Query: 215 SNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVE 274
           S  I  D I  + +I+   +  LF EA    + M   G+ P   +YS +L +Y  + K  
Sbjct: 259 SGNIVPDLIACNMMISVYGKAKLFREARLLLQEMRDNGVNPSTASYSTLLAIYVDNQKFV 318

Query: 275 EVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLL 334
           E +SL+          D    +++  ++G+             M+ +G++PN+V YNT+L
Sbjct: 319 EAVSLFSEMNEVECPIDLTTCNIMIDVYGQLQMIKEADCFFWGMRKMGIEPNVVSYNTVL 378

Query: 335 EAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWP 394
              G+AG  G A  LF  M   G+  +  T   +I IYGK+     A  L + M+     
Sbjct: 379 RVYGEAGLFGEAVHLFSLMQMKGVPQNVVTYNTMISIYGKSLEHDKATNLIQEMQSRGIQ 438

Query: 395 MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIE 454
            + I Y+T++++    G ++ A  LF  ++ S   K D   Y  M+  Y   G V +A  
Sbjct: 439 PNAITYSTIISIWEKAGKLDRAAMLFHKLRTSG-VKIDEILYQTMIVAYQKAGLVAHAKR 497

Query: 455 LFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVS 514
           L  E+ +     NV   T  I  L +A ++D+ + VF  + D G   D  + GC++ + S
Sbjct: 498 LLNELKQPD---NVSRETA-ITILARAGKVDEAMWVFRQAFDAGEVKDISVFGCIIDIFS 553



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 115/237 (48%), Gaps = 5/237 (2%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           +TY+T+I+   +    D+A    + M   G+ P+ +TYS I+ ++ K+GK++    L+ +
Sbjct: 407 VTYNTMISIYGKSLEHDKATNLIQEMQSRGIQPNAITYSTIISIWEKAGKLDRAAMLFHK 466

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
              SG K D I +  +   + ++G     + +L E+K    QP+ V   T +  + +AGK
Sbjct: 467 LRTSGVKIDEILYQTMIVAYQKAGLVAHAKRLLNELK----QPDNVSRETAITILARAGK 522

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
              A  +F +  ++G   D      +I I+ + R     +E++E+MRE     D  +   
Sbjct: 523 VDEAMWVFRQAFDAGEVKDISVFGCIIDIFSRERKYAHVVEVFEKMREVGHFPDSNVIAL 582

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           +LN    +   E A+ L++ M       PD   +  ML +YG+  + +    LFE++
Sbjct: 583 VLNAFGKLRKFERADALYKQMYEEGCVFPDEVHFQ-MLGLYGARMDFNMVESLFEKL 638



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 131/290 (45%), Gaps = 40/290 (13%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L +EM   E  +D  T + +I    +  +  EA  +F  M K G+ P+ V+Y+ +L VY 
Sbjct: 323 LFSEMNEVECPIDLTTCNIMIDVYGQLQMIKEADCFFWGMRKMGIEPNVVSYNTVLRVYG 382

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           ++G   E + L+      G   + + ++ +  ++G+S ++D    ++QEM+S G+QPN +
Sbjct: 383 EAGLFGEAVHLFSLMQMKGVPQNVVTYNTMISIYGKSLEHDKATNLIQEMQSRGIQPNAI 442

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            Y+T++    KAGK   A  LF ++  SG+  DE     +I  Y KA     A  L   +
Sbjct: 443 TYSTIISIWEKAGKLDRAAMLFHKLRTSGVKIDEILYQTMIVAYQKAGLVAHAKRL---L 499

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEA----------------------------ER-- 418
            E K P D +   T + + A  G V+EA                            ER  
Sbjct: 500 NELKQP-DNVSRETAITILARAGKVDEAMWVFRQAFDAGEVKDISVFGCIIDIFSRERKY 558

Query: 419 -----LFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
                +FE M+   +  PD+     +LN +G     + A  L+++M E G
Sbjct: 559 AHVVEVFEKMREVGHF-PDSNVIALVLNAFGKLRKFERADALYKQMYEEG 607



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 114/259 (44%), Gaps = 47/259 (18%)

Query: 184 PMETIFYNVTM----KSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFD 239
           P   + YN  +    KSL   +   LI+    EM S  I+ + ITYSTII+  ++    D
Sbjct: 403 PQNVVTYNTMISIYGKSLEHDKATNLIQ----EMQSRGIQPNAITYSTIISIWEKAGKLD 458

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVY-------------------------------A 268
            A   F ++  +G+  DE+ Y  ++  Y                               A
Sbjct: 459 RAAMLFHKLRTSGVKIDEILYQTMIVAYQKAGLVAHAKRLLNELKQPDNVSRETAITILA 518

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           ++GKV+E + ++ +   +G   D   F  +  +F     Y  +  V ++M+ +G  P+  
Sbjct: 519 RAGKVDEAMWVFRQAFDAGEVKDISVFGCIIDIFSRERKYAHVVEVFEKMREVGHFPDSN 578

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESG-LTPDEKTLTALIKIYGKARWAKDALE-LWE 386
           V   +L A GK  K   A +L+ +M E G + PDE     ++ +YG AR   + +E L+E
Sbjct: 579 VIALVLNAFGKLRKFERADALYKQMYEEGCVFPDEVHFQ-MLGLYG-ARMDFNMVESLFE 636

Query: 387 RMRE----NKWPMDFILYN 401
           ++      NK  + F++ N
Sbjct: 637 KLDSHPNINKKELHFVVAN 655


>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
 gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
          Length = 500

 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 98/333 (29%), Positives = 162/333 (48%), Gaps = 3/333 (0%)

Query: 213 MVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK 272
           M    I  +  TYS+II    +    +E+ +  E M   G  PD   ++ ++  +A+S  
Sbjct: 1   MRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNN 60

Query: 273 VEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNT 332
           +E+   +Y+  V SG+KPD +++ +L     + G  D    +L EM   G  P++  Y++
Sbjct: 61  MEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSS 120

Query: 333 LLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENK 392
           L+ A+ KA +   A SLFDEM+  G  PD      LI    +A   KDA E +++M ++ 
Sbjct: 121 LVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHG 180

Query: 393 WPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNA 452
              +  +YN LL+     G +E+A  LF +MK S  C PD  +Y  +L+       V+  
Sbjct: 181 CQPNVPVYNVLLHGLCSSGQLEQANTLFAEMK-SHSCSPDVVTYNTLLDAVCKARRVEEG 239

Query: 453 IELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSV 512
            +LFE M   G   NV+  + LI  L +   ++  + VFG  ++ G KP+      L+S 
Sbjct: 240 CKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISG 299

Query: 513 VSLCETSEDVGKVITCLQQA--NPKLVAFLNLI 543
           +   E      ++   + QA   P  VA+ +LI
Sbjct: 300 LCRAEKVIQARELFEKMTQACIPPDAVAYNSLI 332



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 157/335 (46%), Gaps = 3/335 (0%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           ++SY     + +    P +   +N  M+        +   ++   MV +  + DN++Y  
Sbjct: 27  EESYKVLEEMMAAGCNP-DVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHI 85

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           +I    +    DE+++    M   G  P    YS+++   AK+ +V+   SL++  +  G
Sbjct: 86  LIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAKARRVDHASSLFDEMIRGG 145

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
             PD + F  L     ++G         ++M   G QPN+ VYN LL  +  +G+   A 
Sbjct: 146 HHPDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQPNVPVYNVLLHGLCSSGQLEQAN 205

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
           +LF EM     +PD  T   L+    KAR  ++  +L+E MR   +  + I ++TL++  
Sbjct: 206 TLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGL 265

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
              G +E+A  +F  M L   CKP+ Y+YT +++       V  A ELFE+M++  +  +
Sbjct: 266 CRTGELEKALEVFGSM-LEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACIPPD 324

Query: 468 VMGCTCLIQCLGKARRIDDLVRVF-GVSIDRGVKP 501
            +    LI    K   +D+  +++  +S   G++P
Sbjct: 325 AVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQP 359



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 157/330 (47%), Gaps = 2/330 (0%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           Y+  +++L   R+      L +EM+      D + +  +I    +     +A E F++M 
Sbjct: 118 YSSLVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMP 177

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
           K G  P+   Y+ +L     SG++E+  +L+    +    PD + ++ L     ++   +
Sbjct: 178 KHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVE 237

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               + + M++ G  PN++ ++TL+  + + G+   A  +F  M+E+G  P++ T T LI
Sbjct: 238 EGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLI 297

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
               +A     A EL+E+M +   P D + YN+L+      G ++EAE+L+ +M      
Sbjct: 298 SGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGL 357

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
           +P   ++  +++ +   G +  A EL  EM   G+A +      LI  L +A ++D+ + 
Sbjct: 358 QPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADSCTYRILIAGLSRATKLDEALE 417

Query: 490 VFGVSIDRGVKPDDRLCGCLLSVVSLCETS 519
           V+    ++    D     C+  V  LC+T 
Sbjct: 418 VYKQMREKKFLLDP--VSCVSFVGGLCKTG 445



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 149/310 (48%), Gaps = 3/310 (0%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           P+ P     L  L S    +++   F  +KS +  P + + YN  + ++   R+ +   +
Sbjct: 183 PNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSP-DVVTYNTLLDAVCKARRVEEGCK 241

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L   M +     + IT+ST+I    R    ++A+E F  M + G  P++ TY+ ++    
Sbjct: 242 LFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLC 301

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS-LGVQPNL 327
           ++ KV +   L+E+   +   PD +A++ L   + + G  D    + +EM    G+QP +
Sbjct: 302 RAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTI 361

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
           V +NTL++   K GK G A  L  EM   GL  D  T   LI    +A    +ALE++++
Sbjct: 362 VTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADSCTYRILIAGLSRATKLDEALEVYKQ 421

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           MRE K+ +D +   + +      G +++A  +FE  + S    P+  ++  +       G
Sbjct: 422 MREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAV-PNPETFRILSESLIKLG 480

Query: 448 NVDNAIELFE 457
            V++A +L E
Sbjct: 481 RVEDAQKLME 490



 Score = 48.5 bits (114), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 26/113 (23%), Positives = 57/113 (50%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           +L  EM +  +  D+ TY  +I    R    DEA+E +++M +   + D V+  + +   
Sbjct: 382 ELVAEMGTKGLAADSCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGL 441

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
            K+G +++  +++E    SG  P+P  F +L +   + G  +  + +++  K+
Sbjct: 442 CKTGNIDQAYAVFEATRKSGAVPNPETFRILSESLIKLGRVEDAQKLMEPAKA 494


>gi|15224671|ref|NP_180698.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
 gi|75206083|sp|Q9SIC9.1|PP178_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g31400, chloroplastic; Flags: Precursor
 gi|4589961|gb|AAD26479.1| unknown protein [Arabidopsis thaliana]
 gi|330253448|gb|AEC08542.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
          Length = 918

 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 129/558 (23%), Positives = 245/558 (43%), Gaps = 37/558 (6%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           FF+ ++   + P + I +N  +     G  ++    L +EM +  IE D  +Y+T++   
Sbjct: 326 FFDEMQRNGVQP-DRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAI 384

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +    D A E   +M    +MP+ V+YS ++D +AK+G+ +E L+L+      G   D 
Sbjct: 385 CKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDR 444

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           ++++ L  ++ + G  +    +L+EM S+G++ ++V YN LL   GK GK    + +F E
Sbjct: 445 VSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTE 504

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M    + P+  T + LI  Y K    K+A+E++   +      D +LY+ L++     GL
Sbjct: 505 MKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGL 564

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD------NAIELFEEMSELGVAI 466
           V  A  L ++M   +   P+  +Y ++++ +G    +D      N   L    S L    
Sbjct: 565 VGSAVSLIDEMT-KEGISPNVVTYNSIIDAFGRSATMDRSADYSNGGSLPFSSSALSALT 623

Query: 467 NVMGCTCLIQCLGK----------------ARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
              G   +IQ  G+                 + +  ++ VF       +KP+      +L
Sbjct: 624 ETEG-NRVIQLFGQLTTESNNRTTKDCEEGMQELSCILEVFRKMHQLEIKPNVVTFSAIL 682

Query: 511 SVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENI---KEEFRNVIKDTEVD 567
           +  S C + ED   ++  L+  + K+   ++ +       EN+    +   + + + +  
Sbjct: 683 NACSRCNSFEDASMLLEELRLFDNKVYGVVHGLLMGQR--ENVWLQAQSLFDKVNEMDGS 740

Query: 568 ARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQT 627
               F N L D+  +    +R  EL+    L G    +      +  LD+  +S GAA+ 
Sbjct: 741 TASAFYNALTDMLWHFG-QKRGAELV---ALEGRSRQVWENVWSDSCLDLHLMSSGAARA 796

Query: 628 ALEEWMWTLAKIVLREEVLPQLFLAETGTGTHKFSQG---LATAFASHVNKLAAPFRQSE 684
            +  W+  +  IV     LP++    TG G H    G   L  A    +  + APF  S+
Sbjct: 797 MVHAWLLNIRSIVYEGHELPKVLSILTGWGKHSKVVGDGALRRAVEVLLRGMDAPFHLSK 856

Query: 685 GKAGCFVATREDLVSWVQ 702
              G F ++   + +W++
Sbjct: 857 CNMGRFTSSGSVVATWLR 874



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 107/387 (27%), Positives = 177/387 (45%), Gaps = 15/387 (3%)

Query: 207 EQLANEMVSNEIEL---DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVT--YS 261
           E   + M+S E +L   D+ TY  II      N  D+A+ ++E   K     +E     S
Sbjct: 180 EMFHSLMLSFESKLCGSDDCTY--IIRELGNRNECDKAVGFYEFAVKRERRKNEQGKLAS 237

Query: 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
           A++    + GKV     ++E   A G+     AFS L   +G SG ++    V   MK  
Sbjct: 238 AMISTLGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEY 297

Query: 322 GVQPNLVVYNTLLEAMGKAGKP-GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380
           G++PNLV YN +++A GK G         FDEM  +G+ PD  T  +L+ +  +    + 
Sbjct: 298 GLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEA 357

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
           A  L++ M   +   D   YNTLL+     G ++ A  +   M +     P+  SY+ ++
Sbjct: 358 ARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKR-IMPNVVSYSTVI 416

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
           + +   G  D A+ LF EM  LG+A++ +    L+    K  R ++ + +       G+K
Sbjct: 417 DGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIK 476

Query: 501 PDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAFLNLIEDNSTG--FENIKEE 556
            D      LL         ++V KV T +++ +  P L+ +  LI+  S G  ++   E 
Sbjct: 477 KDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEI 536

Query: 557 FRNVIKDTEVDARRPFCNCLID-ICRN 582
           FR   K   + A     + LID +C+N
Sbjct: 537 FRE-FKSAGLRADVVLYSALIDALCKN 562



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 156/313 (49%), Gaps = 3/313 (0%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           FN +K   L P   + YN  + +  + G +F+ + +  +EM  N ++ D IT+++++   
Sbjct: 291 FNSMKEYGLRP-NLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVC 349

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            R  L++ A   F+ M    +  D  +Y+ +LD   K G+++    +  +       P+ 
Sbjct: 350 SRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNV 409

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           +++S +   F ++G +D    +  EM+ LG+  + V YNTLL    K G+   A  +  E
Sbjct: 410 VSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILRE 469

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M   G+  D  T  AL+  YGK     +  +++  M+      + + Y+TL++  +  GL
Sbjct: 470 MASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGL 529

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
            +EA  +F + K S   + D   Y+A+++     G V +A+ L +EM++ G++ NV+   
Sbjct: 530 YKEAMEIFREFK-SAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYN 588

Query: 473 CLIQCLGKARRID 485
            +I   G++  +D
Sbjct: 589 SIIDAFGRSATMD 601


>gi|302775294|ref|XP_002971064.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
 gi|300161046|gb|EFJ27662.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
          Length = 814

 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 109/434 (25%), Positives = 196/434 (45%), Gaps = 7/434 (1%)

Query: 160 ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIE 219
           +L SLK    +  FF W   Q  F  +   YN  M  L   + +     +  EM+   I 
Sbjct: 92  VLRSLKVTGTAISFFRWAGEQAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIA 151

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
            +  +++ +I    R    D+A+  FE M +    PD  T+  ++D   K+G  E+   +
Sbjct: 152 PNTFSFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEV 211

Query: 280 YERGVASGW-KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMG 338
           +   +A G+  PD    + + +   ++      R V  +M+  G  P+ + YNT+++ + 
Sbjct: 212 FHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLA 271

Query: 339 KAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFI 398
           KAG    A  + D M+     P E T   L+    KA   + A EL+  M  + +  + +
Sbjct: 272 KAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSV 331

Query: 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458
           +Y +L++  A  G ++EA  LF++M  + Y +PD  ++T M++     GN + A + FEE
Sbjct: 332 IYTSLIHGFAKSGRMKEACSLFDEMVEAGY-RPDVITHTVMIDGLCKSGNFEQAAKSFEE 390

Query: 459 MSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS----VVS 514
           M   G   NV+  T +IQ L K  R+ +  R+    I  G  PD     CLL     +  
Sbjct: 391 MMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGR 450

Query: 515 LCETSEDVGKVITCLQQANPKLV-AFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFC 573
           L E ++ + ++  C    N +L  + +N + D  +  + + + F       E       C
Sbjct: 451 LDEAAQLLDELDKCSSSPNLQLYSSLVNGLCDGGSVEKTLDDLFEQSKAAAETLDPGLCC 510

Query: 574 NCLIDICRNRNLNE 587
           + ++ +C+   L+E
Sbjct: 511 SIIVGLCKTGRLDE 524



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 94/415 (22%), Positives = 192/415 (46%), Gaps = 16/415 (3%)

Query: 113 STYSYNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTRENALLILNSL---KFWQK 169
           +T+S+N  +R      R+ +D     E   R       +P     L++++ L      +K
Sbjct: 153 NTFSFNILIRSFAR-TRRADDAVTCFEIMKRKRC----KPDLHTFLILVDCLCKAGMDEK 207

Query: 170 SYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTII 229
           ++  F+ + +    P +   +   +++L   ++ +   ++  +M       D I Y+T+I
Sbjct: 208 AFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMI 267

Query: 230 TCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWK 289
               +     EA++  + M     +P EVTY  +++   K+G +E    L+    ASG++
Sbjct: 268 DGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFR 327

Query: 290 PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSL 349
           P+ + ++ L   F +SG       +  EM   G +P+++ +  +++ + K+G    A   
Sbjct: 328 PNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKS 387

Query: 350 FDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCAD 409
           F+EM+  G  P+  T T +I+   K     +A  + + M  +    D + Y  LL+    
Sbjct: 388 FEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCK 447

Query: 410 IGLVEEAERLFEDMKLSDYC--KPDNYSYTAMLNIYGSGGNVDNAI-ELFEEMSELGVAI 466
           +G ++EA +L +++   D C   P+   Y++++N    GG+V+  + +LFE+       +
Sbjct: 448 LGRLDEAAQLLDEL---DKCSSSPNLQLYSSLVNGLCDGGSVEKTLDDLFEQSKAAAETL 504

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSED 521
           +   C  +I  L K  R+D+  R+F   +  G KPD      L++   LC + E+
Sbjct: 505 DPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILIN--GLCRSREN 557



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 95/415 (22%), Positives = 171/415 (41%), Gaps = 74/415 (17%)

Query: 183 FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
           FP + I YN  +  L      Q   ++ + M++       +TY  ++    +    + A 
Sbjct: 256 FPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAE 315

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
           E F  M  +G  P+ V Y++++  +AKSG+++E  SL++  V +G++PD I  +V+    
Sbjct: 316 ELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGL 375

Query: 303 GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
            +SG+++      +EM   G +PN+V Y T+++ + K G+   A  +   M+  G  PD 
Sbjct: 376 CKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDS 435

Query: 363 KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE-------- 414
            T   L+  + K     +A +L + + +     +  LY++L+N   D G VE        
Sbjct: 436 VTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVNGLCDGGSVEKTLDDLFE 495

Query: 415 ----------------------------EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
                                       EA R+F+ M +S+ CKPD  +Y  ++N     
Sbjct: 496 QSKAAAETLDPGLCCSIIVGLCKTGRLDEACRIFQRM-VSEGCKPDATTYNILINGLCRS 554

Query: 447 -------------------------------------GNVDNAIELFEEMSELGVAINVM 469
                                                G VD A+++ EE S  G   +V+
Sbjct: 555 RENRVERAFALLHDLEKVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVV 614

Query: 470 GCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGK 524
             T L   L    ++D  V +F   + +G  PD     C+++ +   +  ED  K
Sbjct: 615 AYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKVKKLEDACK 669



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 96/391 (24%), Positives = 161/391 (41%), Gaps = 43/391 (10%)

Query: 152 PTRENALLILNSL---KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           PT     +++NSL      +++   F  + +    P   I+ ++     + GR  +    
Sbjct: 293 PTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEAC-S 351

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L +EMV      D IT++ +I    +   F++A + FE M + G  P+ VTY+ I+   +
Sbjct: 352 LFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLS 411

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           K G+V     + +  +A G  PD + +  L   F + G  D    +L E+      PNL 
Sbjct: 412 KIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQ 471

Query: 329 VYNTLLEAMGKAGK--------------------PGLARSL----------------FDE 352
           +Y++L+  +   G                     PGL  S+                F  
Sbjct: 472 LYSSLVNGLCDGGSVEKTLDDLFEQSKAAAETLDPGLCCSIIVGLCKTGRLDEACRIFQR 531

Query: 353 MVESGLTPDEKTLTALIKIYGKAR--WAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
           MV  G  PD  T   LI    ++R    + A  L   + +  +  D + Y  L      I
Sbjct: 532 MVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEKVGYLPDAVTYTPLCIGLCKI 591

Query: 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG 470
           G V+ A ++ E+     +   D  +YTA+       G VD A+ LF+EM   G A +   
Sbjct: 592 GEVDRAVKMLEEASSRGW-NADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAA 650

Query: 471 CTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
             C+I  L K ++++D  + F   I +G KP
Sbjct: 651 YCCIINGLIKVKKLEDACKFFDEMIGKGQKP 681



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 114/259 (44%), Gaps = 4/259 (1%)

Query: 208 QLANEMVSNEIELDNITYSTIIT--CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
           ++   MVS   + D  TY+ +I   C  R N  + A      + K G +PD VTY+ +  
Sbjct: 527 RIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEKVGYLPDAVTYTPLCI 586

Query: 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325
              K G+V+  + + E   + GW  D +A++ L       G  D    + QEM   G  P
Sbjct: 587 GLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAP 646

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
           +   Y  ++  + K  K   A   FDEM+  G  P   T TAL++    A    +A   +
Sbjct: 647 DAAAYCCIINGLIKVKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRF 706

Query: 386 ERM-RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYG 444
           E M    +     ++Y+ L++       V+ A +LFEDM +S    P   +  ++ +   
Sbjct: 707 ESMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDM-ISRGNVPTAVTSASLFDGLV 765

Query: 445 SGGNVDNAIELFEEMSELG 463
             G  + A EL +EM+  G
Sbjct: 766 RSGKTEKAQELLQEMAAGG 784



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 76/185 (41%), Gaps = 1/185 (0%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + Y      L +  Q      L  EMV      D   Y  II    +    ++A ++F
Sbjct: 612 DVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKVKKLEDACKFF 671

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIA-FSVLGKMFGE 304
           + M   G  P   TY+A++     +G V+E    +E  +A G     +  +  L   F +
Sbjct: 672 DEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFESMLARGELVGSVMIYDALIHGFCK 731

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
           +   D    + ++M S G  P  V   +L + + ++GK   A+ L  EM   G  P   T
Sbjct: 732 ALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHAAT 791

Query: 365 LTALI 369
            TA++
Sbjct: 792 FTAIL 796



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 65/143 (45%), Gaps = 1/143 (0%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTG-LMPDEVTYSAILDVYAK 269
           +EM+    +    TY+ ++         DEA   FE M   G L+   + Y A++  + K
Sbjct: 672 DEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFESMLARGELVGSVMIYDALIHGFCK 731

Query: 270 SGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVV 329
           + KV+  L L+E  ++ G  P  +  + L      SG  +  + +LQEM + G  P+   
Sbjct: 732 ALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHAAT 791

Query: 330 YNTLLEAMGKAGKPGLARSLFDE 352
           +  +L+ + K+ + G    L  E
Sbjct: 792 FTAILDGLRKSDESGKLLKLVQE 814


>gi|357449339|ref|XP_003594946.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124359380|gb|ABN05846.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355483994|gb|AES65197.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 849

 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 126/499 (25%), Positives = 225/499 (45%), Gaps = 27/499 (5%)

Query: 128 ARKLNDCDNTEEAFL--RAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPM 185
           A KL D    EE  L  +A T + H   R            ++++   F  +K   L P 
Sbjct: 221 ASKLFDIIPVEEYSLDVKACTTVLHAYARTGK---------YKRAIEIFEKMKETGLDPT 271

Query: 186 ETIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEW 244
             + YNV +    + GR + +I +L +EM S  +E D  T +T+I+   R  + DEA  +
Sbjct: 272 -LVTYNVMLDVYGKMGRAWSMILELLDEMRSKGLEFDEFTCTTVISACGREGILDEARRF 330

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
           F+ +   G  P   TY+++L V+ K+G   E L++ +    +  +PD I ++ L   +  
Sbjct: 331 FDDLKLNGYKPGTATYNSMLQVFGKAGVYTEALNILKEMEDNNCEPDAITYNELVAAYVR 390

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
           +G +D    V+  M S GV PN + Y T++ A GKAG    A  +F +M E G  P+  T
Sbjct: 391 AGFHDEGAAVIDTMASKGVMPNAITYTTVINAYGKAGDADKALEVFGQMKELGCVPNVCT 450

Query: 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
              ++ + GK   ++D +++   M+ N  P D I +NT+L +C + G  +   ++  +MK
Sbjct: 451 YNNVLVLLGKRSRSEDMIKILCDMKLNGCPPDRITWNTMLAVCGEKGKQKFVSQVLREMK 510

Query: 425 LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484
              + +PD  ++  +++ YG  G+  +  +++ EM   G    +     L+  L +    
Sbjct: 511 NCGF-EPDKETFNTLISAYGRCGSEVDVAKMYGEMVAAGFTPCITTYNALLNALARRGNW 569

Query: 485 DDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAFLNL 542
                V      +G KP++     LL   S       + KV   +   +  P  +    L
Sbjct: 570 KAAESVVLDMRKKGFKPNETSYSLLLHCYSKAGNVRGLEKVEMEIYDGHVFPSWMLLRTL 629

Query: 543 IEDNS-----TGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGT 597
           +  N       G E    + +N     ++       +  +   RN+ L E+AHE+L +  
Sbjct: 630 VLTNYKCRQLKGMERAFHQLQNNGYKLDMVVINSMLSMFV---RNQKL-EKAHEMLDVIH 685

Query: 598 LYGLYPGL--HNKTLDEWS 614
           + GL P L  +N  +D ++
Sbjct: 686 VSGLQPNLVTYNSLIDLYA 704



 Score =  129 bits (325), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 95/378 (25%), Positives = 169/378 (44%), Gaps = 48/378 (12%)

Query: 167 WQKSYFFFNWI----KSQNL-FPMETIFYNVTMKSLRFGR--QFQLIEQLANEMVSNEIE 219
           W++++  F W+     S+N+    +++ + V M     GR  Q+ +  +L + +   E  
Sbjct: 179 WERAFLLFEWVWLNFGSENMKVDDQSVEFMVKM----LGRESQYSIASKLFDIIPVEEYS 234

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK------- 272
           LD    +T++    R   +  AIE FE+M +TGL P  VTY+ +LDVY K G+       
Sbjct: 235 LDVKACTTVLHAYARTGKYKRAIEIFEKMKETGLDPTLVTYNVMLDVYGKMGRAWSMILE 294

Query: 273 -----------------------------VEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
                                        ++E    ++    +G+KP    ++ + ++FG
Sbjct: 295 LLDEMRSKGLEFDEFTCTTVISACGREGILDEARRFFDDLKLNGYKPGTATYNSMLQVFG 354

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
           ++G Y     +L+EM+    +P+ + YN L+ A  +AG      ++ D M   G+ P+  
Sbjct: 355 KAGVYTEALNILKEMEDNNCEPDAITYNELVAAYVRAGFHDEGAAVIDTMASKGVMPNAI 414

Query: 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
           T T +I  YGKA  A  ALE++ +M+E     +   YN +L +       E+  ++  DM
Sbjct: 415 TYTTVINAYGKAGDADKALEVFGQMKELGCVPNVCTYNNVLVLLGKRSRSEDMIKILCDM 474

Query: 424 KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483
           KL+  C PD  ++  ML + G  G      ++  EM   G   +      LI   G+   
Sbjct: 475 KLNG-CPPDRITWNTMLAVCGEKGKQKFVSQVLREMKNCGFEPDKETFNTLISAYGRCGS 533

Query: 484 IDDLVRVFGVSIDRGVKP 501
             D+ +++G  +  G  P
Sbjct: 534 EVDVAKMYGEMVAAGFTP 551



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 89/436 (20%), Positives = 171/436 (39%), Gaps = 111/436 (25%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQL--ANEMVSNEIELDNITYSTIIT 230
           FF+ +K     P  T  YN  ++   FG+     E L    EM  N  E D ITY+ ++ 
Sbjct: 330 FFDDLKLNGYKP-GTATYNSMLQV--FGKAGVYTEALNILKEMEDNNCEPDAITYNELVA 386

Query: 231 CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY----ERGVA- 285
              R    DE     + M   G+MP+ +TY+ +++ Y K+G  ++ L ++    E G   
Sbjct: 387 AYVRAGFHDEGAAVIDTMASKGVMPNAITYTTVINAYGKAGDADKALEVFGQMKELGCVP 446

Query: 286 ------------------------------SGWKPDPIAFSVLGKMFGESGDYDGIRYVL 315
                                         +G  PD I ++ +  + GE G    +  VL
Sbjct: 447 NVCTYNNVLVLLGKRSRSEDMIKILCDMKLNGCPPDRITWNTMLAVCGEKGKQKFVSQVL 506

Query: 316 QEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT---------------- 359
           +EMK+ G +P+   +NTL+ A G+ G       ++ EMV +G T                
Sbjct: 507 REMKNCGFEPDKETFNTLISAYGRCGSEVDVAKMYGEMVAAGFTPCITTYNALLNALARR 566

Query: 360 -------------------PDEKTLTALIKIYGKA------------------------- 375
                              P+E + + L+  Y KA                         
Sbjct: 567 GNWKAAESVVLDMRKKGFKPNETSYSLLLHCYSKAGNVRGLEKVEMEIYDGHVFPSWMLL 626

Query: 376 ----------RWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
                     R  K     + +++ N + +D ++ N++L+M      +E+A  + + + +
Sbjct: 627 RTLVLTNYKCRQLKGMERAFHQLQNNGYKLDMVVINSMLSMFVRNQKLEKAHEMLDVIHV 686

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
           S   +P+  +Y +++++Y   G+   A E+ +++   G++ +V+    +I+   K   + 
Sbjct: 687 SGL-QPNLVTYNSLIDLYARVGDCWKAEEMLKDIQNSGISPDVVSYNTVIKGFCKKGLVQ 745

Query: 486 DLVRVFGVSIDRGVKP 501
           + +R+       GV+P
Sbjct: 746 EAIRILSEMTANGVQP 761



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 105/193 (54%), Gaps = 6/193 (3%)

Query: 201 RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTY 260
           RQ + +E+  +++ +N  +LD +  +++++   R    ++A E  + ++ +GL P+ VTY
Sbjct: 637 RQLKGMERAFHQLQNNGYKLDMVVINSMLSMFVRNQKLEKAHEMLDVIHVSGLQPNLVTY 696

Query: 261 SAILDVYAKSG---KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQE 317
           ++++D+YA+ G   K EE+L   +    SG  PD ++++ + K F + G       +L E
Sbjct: 697 NSLIDLYARVGDCWKAEEMLKDIQN---SGISPDVVSYNTVIKGFCKKGLVQEAIRILSE 753

Query: 318 MKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARW 377
           M + GVQP  + +NT +      G    A  +   M+E G  P+E T   +I  Y KA+ 
Sbjct: 754 MTANGVQPCPITFNTFMSCYAGNGLFAEADEVIRYMIEHGCMPNELTYKIVIDGYIKAKK 813

Query: 378 AKDALELWERMRE 390
            K+A++   +++E
Sbjct: 814 HKEAMDFVSKIKE 826



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 67/308 (21%), Positives = 130/308 (42%), Gaps = 36/308 (11%)

Query: 206 IEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
           + ++  EMV+        TY+ ++    R   +  A      M K G  P+E +YS +L 
Sbjct: 537 VAKMYGEMVAAGFTPCITTYNALLNALARRGNWKAAESVVLDMRKKGFKPNETSYSLLLH 596

Query: 266 VYAKSGKV---EEV-LSLYERGV-------------------------------ASGWKP 290
            Y+K+G V   E+V + +Y+  V                                +G+K 
Sbjct: 597 CYSKAGNVRGLEKVEMEIYDGHVFPSWMLLRTLVLTNYKCRQLKGMERAFHQLQNNGYKL 656

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
           D +  + +  MF  +   +    +L  +   G+QPNLV YN+L++   + G    A  + 
Sbjct: 657 DMVVINSMLSMFVRNQKLEKAHEMLDVIHVSGLQPNLVTYNSLIDLYARVGDCWKAEEML 716

Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
            ++  SG++PD  +   +IK + K    ++A+ +   M  N      I +NT ++  A  
Sbjct: 717 KDIQNSGISPDVVSYNTVIKGFCKKGLVQEAIRILSEMTANGVQPCPITFNTFMSCYAGN 776

Query: 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG 470
           GL  EA+ +   M +   C P+  +Y  +++ Y        A++   ++ E+ ++ +   
Sbjct: 777 GLFAEADEVIRYM-IEHGCMPNELTYKIVIDGYIKAKKHKEAMDFVSKIKEIDISFDDQS 835

Query: 471 CTCLIQCL 478
              L  C+
Sbjct: 836 LKKLASCI 843



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/188 (20%), Positives = 90/188 (47%)

Query: 181 NLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDE 240
           N + ++ +  N  +      ++ +   ++ + +  + ++ + +TY+++I    R     +
Sbjct: 652 NGYKLDMVVINSMLSMFVRNQKLEKAHEMLDVIHVSGLQPNLVTYNSLIDLYARVGDCWK 711

Query: 241 AIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGK 300
           A E  + +  +G+ PD V+Y+ ++  + K G V+E + +     A+G +P PI F+    
Sbjct: 712 AEEMLKDIQNSGISPDVVSYNTVIKGFCKKGLVQEAIRILSEMTANGVQPCPITFNTFMS 771

Query: 301 MFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTP 360
            +  +G +     V++ M   G  PN + Y  +++   KA K   A     ++ E  ++ 
Sbjct: 772 CYAGNGLFAEADEVIRYMIEHGCMPNELTYKIVIDGYIKAKKHKEAMDFVSKIKEIDISF 831

Query: 361 DEKTLTAL 368
           D+++L  L
Sbjct: 832 DDQSLKKL 839


>gi|115462947|ref|NP_001055073.1| Os05g0275000 [Oryza sativa Japonica Group]
 gi|50878350|gb|AAT85125.1| unknown protein, contains pentatricopeptide (PPR) repeat, PF01535
           [Oryza sativa Japonica Group]
 gi|113578624|dbj|BAF16987.1| Os05g0275000 [Oryza sativa Japonica Group]
 gi|215695094|dbj|BAG90285.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 793

 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 98/370 (26%), Positives = 171/370 (46%), Gaps = 12/370 (3%)

Query: 142 LRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSL-RFG 200
           +RA T + H  +R            ++++   F  ++ Q + P   + YNV +    R G
Sbjct: 180 VRAYTTVLHALSRAGR---------YERALQLFAELRRQGVVPT-IVTYNVVLDVYGRMG 229

Query: 201 RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTY 260
           R +  I  L  EM +  +E D+ T ST+I    R  L D+A+ +FE +   G +P  VTY
Sbjct: 230 RSWPRIVALLEEMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTY 289

Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
           +A+L V+ K+G   E L + +    SG +PD + ++ L   +  +G ++     L  M S
Sbjct: 290 NALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTS 349

Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380
            G+ PN   YNT++ A    G+   A +LFD M ++G  P+  T   +  + GK      
Sbjct: 350 KGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTA 409

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
            LE+ E M  +    + + +NT+L +C   G+ +   R+   MK S   +    +Y  ++
Sbjct: 410 MLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMK-SCGVELSRDTYNTLI 468

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
           + YG  G+   A ++++EM   G    +     L+  L +         +    +  G K
Sbjct: 469 SAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFK 528

Query: 501 PDDRLCGCLL 510
           P+D+    LL
Sbjct: 529 PNDQSYSLLL 538



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 148/317 (46%), Gaps = 3/317 (0%)

Query: 202 QFQLIEQLANEM-VSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTY 260
           Q  ++  L +EM +     LD   Y+T++    R   ++ A++ F  + + G++P  VTY
Sbjct: 159 QHDVVCDLLDEMPLPPGSRLDVRAYTTVLHALSRAGRYERALQLFAELRRQGVVPTIVTY 218

Query: 261 SAILDVYAKSGKV-EEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMK 319
           + +LDVY + G+    +++L E   A+G +PD    S +    G  G  D      +++K
Sbjct: 219 NVVLDVYGRMGRSWPRIVALLEEMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLK 278

Query: 320 SLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAK 379
           + G  P +V YN LL+  GKAG    A  +  EM +SG  PD  T   L   Y +A + +
Sbjct: 279 ARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFE 338

Query: 380 DALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAM 439
           +A +  + M       +   YNT++   A++G V+EA  LF+ MK + Y  P+  +Y  +
Sbjct: 339 EAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYV-PNVNTYNLI 397

Query: 440 LNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGV 499
             + G        +E+ EEMS  G   N +    ++   GK    D + RV       GV
Sbjct: 398 FGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGV 457

Query: 500 KPDDRLCGCLLSVVSLC 516
           +        L+S    C
Sbjct: 458 ELSRDTYNTLISAYGRC 474



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 143/296 (48%), Gaps = 1/296 (0%)

Query: 206 IEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
           + ++ N M S  +EL   TY+T+I+   RC     A + ++ M  +G  P   TY+A+L+
Sbjct: 445 VTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLN 504

Query: 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325
           V ++ G      S+  + + +G+KP+  ++S+L + + + G+  GI  + +E+    + P
Sbjct: 505 VLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIFP 564

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
           + V+  TL+ A  K  +       F E+   G  PD     +++ +Y K      A E++
Sbjct: 565 SWVILRTLVIANFKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMF 624

Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445
           + ++++    D I YN+L++M A      EAE++ + +K S   KPD  SY  ++N +  
Sbjct: 625 DSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLK-SSQVKPDVVSYNTVINGFCK 683

Query: 446 GGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
            G +  A  +  EM   G+A  V+    L+         ++   V    I   +KP
Sbjct: 684 QGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEAREVVNYMIHHNLKP 739



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 97/402 (24%), Positives = 168/402 (41%), Gaps = 76/402 (18%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLA--NEMVSNEIELDNITYSTIIT 230
           FF  +K++   P   + YN  ++   FG+     E L    EM  +  + D +TY+ +  
Sbjct: 273 FFEDLKARGHVPC-VVTYNALLQV--FGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAG 329

Query: 231 CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
              R   F+EA +  + M   GL+P+  TY+ ++  YA  G+V+E L+L++R   +G+ P
Sbjct: 330 TYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVP 389

Query: 291 D----PIAFSVLGK-------------------------------MFGESGDYDGIRYVL 315
           +     + F +LGK                               + G+ G  D +  VL
Sbjct: 390 NVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVL 449

Query: 316 QEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA 375
             MKS GV+ +   YNTL+ A G+ G    A  ++DEM+ SG TP   T  AL+ +  + 
Sbjct: 450 NGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQ 509

Query: 376 RWAKDALELWERMRENKWPMDFILYNTLLNMCADIG------------------------ 411
                A  +  +M +N +  +   Y+ LL   A  G                        
Sbjct: 510 GDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIFPSWVIL 569

Query: 412 -----------LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
                       +E  E+ F+++K   Y KPD   + +ML +Y   G    A E+F+ + 
Sbjct: 570 RTLVIANFKCRRLEGVEKAFQEVKAQGY-KPDLVIFNSMLAMYAKNGLYSKATEMFDSIK 628

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           + G++ +++    L+    K+    +  ++        VKPD
Sbjct: 629 QSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPD 670



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 112/222 (50%), Gaps = 1/222 (0%)

Query: 182 LFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEA 241
           +FP   I   + + + +  R+ + +E+   E+ +   + D + +++++    +  L+ +A
Sbjct: 562 IFPSWVILRTLVIANFKC-RRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKA 620

Query: 242 IEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKM 301
            E F+ + ++GL PD +TY++++D+YAKS +  E   + ++  +S  KPD ++++ +   
Sbjct: 621 TEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVING 680

Query: 302 FGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD 361
           F + G     + +L EM + G+ P +V Y+TL+           AR + + M+   L P 
Sbjct: 681 FCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEAREVVNYMIHHNLKPM 740

Query: 362 EKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
           E T   ++  Y KA+   +A E    + +     D  L + L
Sbjct: 741 ELTYRRVVDSYCKAKRYDEAREFLSEISDTDQNFDQKLQHML 782



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 100/219 (45%), Gaps = 1/219 (0%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           Y++ ++    G     IE +  E+    I    +   T++    +C   +   + F+ + 
Sbjct: 534 YSLLLQCYAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIANFKCRRLEGVEKAFQEVK 593

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
             G  PD V ++++L +YAK+G   +   +++    SG  PD I ++ L  M+ +S +  
Sbjct: 594 AQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNSLMDMYAKSNESW 653

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               +L+++KS  V+P++V YNT++    K G    A+ +  EM+  G+ P   T   L+
Sbjct: 654 EAEKILKQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLV 713

Query: 370 KIYGKARWAKDALELWERM-RENKWPMDFILYNTLLNMC 407
             Y       +A E+   M   N  PM+      + + C
Sbjct: 714 GGYASLEMFNEAREVVNYMIHHNLKPMELTYRRVVDSYC 752


>gi|125551633|gb|EAY97342.1| hypothetical protein OsI_19265 [Oryza sativa Indica Group]
          Length = 793

 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 98/370 (26%), Positives = 171/370 (46%), Gaps = 12/370 (3%)

Query: 142 LRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSL-RFG 200
           +RA T + H  +R            ++++   F  ++ Q + P   + YNV +    R G
Sbjct: 180 VRAYTTVLHALSRAGR---------YERALQLFAELRRQGVVPT-IVTYNVVLDVYGRMG 229

Query: 201 RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTY 260
           R +  I  L  EM +  +E D+ T ST+I    R  L D+A+ +FE +   G +P  VTY
Sbjct: 230 RSWPRIVALLEEMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTY 289

Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
           +A+L V+ K+G   E L + +    SG +PD + ++ L   +  +G ++     L  M S
Sbjct: 290 NALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTS 349

Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380
            G+ PN   YNT++ A    G+   A +LFD M ++G  P+  T   +  + GK      
Sbjct: 350 KGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTA 409

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
            LE+ E M  +    + + +NT+L +C   G+ +   R+   MK S   +    +Y  ++
Sbjct: 410 MLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMK-SCGVELSRDTYNTLI 468

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
           + YG  G+   A ++++EM   G    +     L+  L +         +    +  G K
Sbjct: 469 SAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFK 528

Query: 501 PDDRLCGCLL 510
           P+D+    LL
Sbjct: 529 PNDQSYSLLL 538



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 148/317 (46%), Gaps = 3/317 (0%)

Query: 202 QFQLIEQLANEM-VSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTY 260
           Q  ++  L +EM +     LD   Y+T++    R   ++ A++ F  + + G++P  VTY
Sbjct: 159 QHDVVCDLLDEMPLPPGSRLDVRAYTTVLHALSRAGRYERALQLFAELRRQGVVPTIVTY 218

Query: 261 SAILDVYAKSGKV-EEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMK 319
           + +LDVY + G+    +++L E   A+G +PD    S +    G  G  D      +++K
Sbjct: 219 NVVLDVYGRMGRSWPRIVALLEEMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLK 278

Query: 320 SLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAK 379
           + G  P +V YN LL+  GKAG    A  +  EM +SG  PD  T   L   Y +A + +
Sbjct: 279 ARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFE 338

Query: 380 DALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAM 439
           +A +  + M       +   YNT++   A++G V+EA  LF+ MK + Y  P+  +Y  +
Sbjct: 339 EAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYV-PNVNTYNLI 397

Query: 440 LNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGV 499
             + G        +E+ EEMS  G   N +    ++   GK    D + RV       GV
Sbjct: 398 FGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGV 457

Query: 500 KPDDRLCGCLLSVVSLC 516
           +        L+S    C
Sbjct: 458 ELSRDTYNTLISAYGRC 474



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 143/296 (48%), Gaps = 1/296 (0%)

Query: 206 IEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
           + ++ N M S  +EL   TY+T+I+   RC     A + ++ M  +G  P   TY+A+L+
Sbjct: 445 VTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLN 504

Query: 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325
           V ++ G      S+  + + +G+KP+  ++S+L + + + G+  GI  + +E+    + P
Sbjct: 505 VLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIFP 564

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
           + V+  TL+ A  K  +       F E+   G  PD     +++ +Y K      A E++
Sbjct: 565 SWVILRTLVIANFKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMF 624

Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445
           + ++++    D I YN+L++M A      EAE++ + +K S   KPD  SY  ++N +  
Sbjct: 625 DSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLK-SSQVKPDVVSYNTVINGFCK 683

Query: 446 GGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
            G +  A  +  EM   G+A  V+    L+         ++   V    I   +KP
Sbjct: 684 QGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEAREVVNYMIHHNLKP 739



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 97/402 (24%), Positives = 168/402 (41%), Gaps = 76/402 (18%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLA--NEMVSNEIELDNITYSTIIT 230
           FF  +K++   P   + YN  ++   FG+     E L    EM  +  + D +TY+ +  
Sbjct: 273 FFEDLKARGHVPC-VVTYNALLQV--FGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAG 329

Query: 231 CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
              R   F+EA +  + M   GL+P+  TY+ ++  YA  G+V+E L+L++R   +G+ P
Sbjct: 330 TYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVP 389

Query: 291 D----PIAFSVLGK-------------------------------MFGESGDYDGIRYVL 315
           +     + F +LGK                               + G+ G  D +  VL
Sbjct: 390 NVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVL 449

Query: 316 QEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA 375
             MKS GV+ +   YNTL+ A G+ G    A  ++DEM+ SG TP   T  AL+ +  + 
Sbjct: 450 NGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQ 509

Query: 376 RWAKDALELWERMRENKWPMDFILYNTLLNMCADIG------------------------ 411
                A  +  +M +N +  +   Y+ LL   A  G                        
Sbjct: 510 GDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIFPSWVIL 569

Query: 412 -----------LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
                       +E  E+ F+++K   Y KPD   + +ML +Y   G    A E+F+ + 
Sbjct: 570 RTLVIANFKCRRLEGVEKAFQEVKAQGY-KPDLVIFNSMLAMYAKNGLYSKATEMFDSIK 628

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           + G++ +++    L+    K+    +  ++        VKPD
Sbjct: 629 QSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPD 670



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 112/222 (50%), Gaps = 1/222 (0%)

Query: 182 LFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEA 241
           +FP   I   + + + +  R+ + +E+   E+ +   + D + +++++    +  L+ +A
Sbjct: 562 IFPSWVILRTLVIANFKC-RRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKA 620

Query: 242 IEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKM 301
            E F+ + ++GL PD +TY++++D+YAKS +  E   + ++  +S  KPD ++++ +   
Sbjct: 621 TEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVING 680

Query: 302 FGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD 361
           F + G     + +L EM + G+ P +V Y+TL+           AR + + M+   L P 
Sbjct: 681 FCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEAREVVNYMIHHNLKPM 740

Query: 362 EKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
           E T   ++  Y KA+   +A E    + +     D  L + L
Sbjct: 741 ELTYRRVVDSYCKAKRYDEAREFLSEISDTDQNFDQKLQHML 782



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 100/219 (45%), Gaps = 1/219 (0%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           Y++ ++    G     IE +  E+    I    +   T++    +C   +   + F+ + 
Sbjct: 534 YSLLLQCYAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIANFKCRRLEGVEKAFQEVK 593

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
             G  PD V ++++L +YAK+G   +   +++    SG  PD I ++ L  M+ +S +  
Sbjct: 594 AQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNSLMDMYAKSNESW 653

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               +L+++KS  V+P++V YNT++    K G    A+ +  EM+  G+ P   T   L+
Sbjct: 654 EAEKILKQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLV 713

Query: 370 KIYGKARWAKDALELWERM-RENKWPMDFILYNTLLNMC 407
             Y       +A E+   M   N  PM+      + + C
Sbjct: 714 GGYASLEMFNEAREVVNYMIHHNLKPMELTYRRVVDSYC 752


>gi|297842227|ref|XP_002888995.1| hypothetical protein ARALYDRAFT_476621 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297334836|gb|EFH65254.1| hypothetical protein ARALYDRAFT_476621 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 863

 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 139/591 (23%), Positives = 244/591 (41%), Gaps = 80/591 (13%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           ++ S    + +K+  + P    +  V     R G  ++ +  L  EM    I+ D +TY+
Sbjct: 192 YETSLELLDRMKNDKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYN 251

Query: 227 TIIT-CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVA 285
           T+++ CA R  L DEA   F  M   G++PD  TYS +++ + K  ++E+V  L     +
Sbjct: 252 TLLSACAIR-GLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVSDLLSEMAS 310

Query: 286 SGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGL 345
            G  PD  +++VL + + +SG       V  +M++ G  PN   Y+ LL   G++G+   
Sbjct: 311 GGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDD 370

Query: 346 ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405
            R LF EM  S   PD  T   LI+++G+  + K+ + L+  M E     D   Y  ++ 
Sbjct: 371 VRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIF 430

Query: 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
            C   GL E+A ++ + M  +D   P + +YT ++  +G     + A+  F  M E+G  
Sbjct: 431 ACGKGGLHEDARKILQYMTANDIV-PSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSN 489

Query: 466 INVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGV-------------------------- 499
            ++     L+    +   + +   +    +D G+                          
Sbjct: 490 PSIETYHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKT 549

Query: 500 ---------KPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAFLNLI----- 543
                     PD+R    +LSV S     ++  +    ++ ++  P ++ +  ++     
Sbjct: 550 YVDMEKSRCDPDERTLEAVLSVYSFARLVDECREQFEEMKASDILPSIMCYCMMLAVYGK 609

Query: 544 ------------EDNSTGFENIKEEFRNVIK-DTEVDARRPFCNCLIDICRN-------R 583
                       E  S    NI +    +IK D + D+       ++D   +       R
Sbjct: 610 TERWDDVNELLEEMLSNRVSNIHQVIGQMIKGDYDDDSNWQIVEYVLDKLNSEGCGLGIR 669

Query: 584 NLNERAHELLYLG------------TLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALEE 631
             N     L +LG            T  GL+P L  K    WS+DV  +S G   TAL  
Sbjct: 670 FYNALLDALWWLGQKERAARVLNEATKRGLFPELFRKNKLVWSVDVHRMSEGGMYTALSV 729

Query: 632 WMWTLAKIVLREEVLPQLFLAETGTGTHKFSQGLATAFASHVNKLAAPFRQ 682
           W+  +  ++L  E LPQL +  +  G  + S   + A  S + K A  F Q
Sbjct: 730 WLNDMNDMLLNGEDLPQLAVVVSVRGQLEKS---SAARESSIAKAAFSFLQ 777



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 152/323 (47%), Gaps = 4/323 (1%)

Query: 225 YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
           Y+ +I+   R  L D+ +E F+ M   G+     +Y+A+++ Y ++G+ E  L L +R  
Sbjct: 144 YTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMK 203

Query: 285 ASGWKPDPIAFSVLGKMFGESG-DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
                P  + ++ +       G D++G+  +  EM+  G+QP++V YNTLL A    G  
Sbjct: 204 NDKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLG 263

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
             A  +F  M + G+ PD  T + L++ +GK R  +   +L   M       D   YN L
Sbjct: 264 DEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVSDLLSEMASGGSLPDITSYNVL 323

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           L   A  G ++EA  +F  M+ +  C P+  +Y+ +LN++G  G  D+  +LF EM    
Sbjct: 324 LEAYAKSGSIKEAMGVFHQMQAAG-CTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSN 382

Query: 464 VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVG 523
              +      LI+  G+     ++V +F   ++  ++PD      ++         ED  
Sbjct: 383 TDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDAR 442

Query: 524 KVITCLQQAN--PKLVAFLNLIE 544
           K++  +   +  P   A+  +IE
Sbjct: 443 KILQYMTANDIVPSSKAYTGVIE 465



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 135/291 (46%), Gaps = 8/291 (2%)

Query: 295 FSVLGKMFGESGDYD-GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
           F+++ K F   GD+   +R      + +  +PN  +Y  ++  +G+ G       +FDEM
Sbjct: 108 FALVFKEFAGRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEM 167

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
              G++    + TALI  YG+    + +LEL +RM+ +K     + YNT++N CA  GL 
Sbjct: 168 PSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNDKISPSILTYNTVINACARGGLD 227

Query: 414 EEA-ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
            E    LF +M+  +  +PD  +Y  +L+     G  D A  +F  M++ G+  ++   +
Sbjct: 228 WEGLLGLFAEMR-HEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYS 286

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQA 532
            L++  GK RR++ +  +       G  PD      LL   +   + ++   V   +Q A
Sbjct: 287 HLVETFGKLRRLEKVSDLLSEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAA 346

Query: 533 ----NPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDI 579
               N    + L  +   S  ++++++ F   +K +  D      N LI++
Sbjct: 347 GCTPNANTYSVLLNLFGQSGRYDDVRQLFLE-MKSSNTDPDAATYNILIEV 396



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 100/233 (42%), Gaps = 8/233 (3%)

Query: 166 FWQKSYF-----FFNWIKSQNLFP-METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIE 219
           F +  YF      F+ +  +N+ P MET  Y   + +   G   +   ++   M +N+I 
Sbjct: 397 FGEGGYFKEVVTLFHDMVEENIEPDMET--YEGIIFACGKGGLHEDARKILQYMTANDIV 454

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
             +  Y+ +I    +  L++EA+  F  M++ G  P   TY ++L  +A+ G V+E  ++
Sbjct: 455 PSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETYHSLLYSFARGGLVKESEAI 514

Query: 280 YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
             R V SG   +   F+   + + + G ++       +M+     P+      +L     
Sbjct: 515 LSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYSF 574

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENK 392
           A      R  F+EM  S + P       ++ +YGK     D  EL E M  N+
Sbjct: 575 ARLVDECREQFEEMKASDILPSIMCYCMMLAVYGKTERWDDVNELLEEMLSNR 627


>gi|225457182|ref|XP_002280557.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic [Vitis vinifera]
          Length = 869

 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 124/488 (25%), Positives = 213/488 (43%), Gaps = 69/488 (14%)

Query: 199 FGR--QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPD 256
           FG+  + + + +L  EM S     D  +Y+ ++    +     EA+  F +M   G +P+
Sbjct: 297 FGKLNRLEKVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPN 356

Query: 257 EVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQ 316
             TYS +L++Y + G+ ++V  L+     S  +P+   +++L  +FGE G +  +  +  
Sbjct: 357 AATYSILLNLYGRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFKEVVTLFH 416

Query: 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
           +M    V+PN+  Y  L+ A GK G    A+ +   M E G+ P  K  T +I+ YG+A 
Sbjct: 417 DMVEENVEPNMETYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSSKAYTGVIEAYGQAA 476

Query: 377 WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY-------- 428
             ++AL  +  M E         YN+L+ M A  GL +E+E +   M  S          
Sbjct: 477 LYEEALVAFNTMNEVGSKPTVETYNSLIQMFAKGGLYKESEAILLKMGQSGVARNRDTFN 536

Query: 429 --------------------------CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
                                     C PD  +  A+L++Y   G V+ + E F E+  L
Sbjct: 537 GVIEAFRQGGQFEEAIKAYVEMEKARCDPDEQTLEAVLSVYCFAGLVEESEEQFGEIKAL 596

Query: 463 GVAINVMGCTCLIQCL-GKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSED 521
           G+  +VM C C++  +  KA R DD  ++        V    ++ G ++      +  +D
Sbjct: 597 GILPSVM-CYCMMLAVYAKADRWDDAHQLLDEMFTNRVSNIHQVIGQMIR----GDYDDD 651

Query: 522 VGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICR 581
                     +N ++V ++         FE +K E         +  R  F N L++   
Sbjct: 652 ----------SNWQMVEYV---------FEKLKSE------GCSLGVR--FYNTLLEALW 684

Query: 582 NRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAKIVL 641
                ERA  +L   T  GL+P L  K    WS+DV  +  GAA TA+  W+  + ++ +
Sbjct: 685 WLGQKERATRVLNEATKRGLFPELFRKNKLVWSVDVHRMWEGAACTAISVWLNNMHEMFI 744

Query: 642 REEVLPQL 649
             + LPQL
Sbjct: 745 SGDDLPQL 752



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/315 (26%), Positives = 147/315 (46%), Gaps = 1/315 (0%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           ++ S    + +K + + P    +  V     R G  ++ +  L  +M    I+ D +TY+
Sbjct: 197 YKSSLELLDRMKKERVSPSILTYNTVINSCARGGLDWEELLGLFAQMRHEGIQADIVTYN 256

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T+++   R  L DEA   F  M + G++PD  TYS +++ + K  ++E+V  L +   + 
Sbjct: 257 TLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNRLEKVSELLKEMESG 316

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G  PD  +++VL +   +SG       V ++M+  G  PN   Y+ LL   G+ G+    
Sbjct: 317 GSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILLNLYGRHGRYDDV 376

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
           R LF EM  S   P+  T   LI ++G+  + K+ + L+  M E     +   Y  L+  
Sbjct: 377 RDLFLEMKVSNTEPNAATYNILINVFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFA 436

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
           C   GL E+A+++   M       P + +YT ++  YG     + A+  F  M+E+G   
Sbjct: 437 CGKGGLHEDAKKILLHMNEKGVV-PSSKAYTGVIEAYGQAALYEEALVAFNTMNEVGSKP 495

Query: 467 NVMGCTCLIQCLGKA 481
            V     LIQ   K 
Sbjct: 496 TVETYNSLIQMFAKG 510



 Score =  115 bits (289), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 79/339 (23%), Positives = 157/339 (46%), Gaps = 2/339 (0%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           WQ+S   F +++ Q         Y + +  L      +  +++ +EM S+ +     +++
Sbjct: 126 WQRSLRLFKYMQRQIWCKPNEHIYTIMIGVLGREGLLEKCQEIFDEMPSHGVAPSVFSFT 185

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG-KVEEVLSLYERGVA 285
            +I    R   +  ++E  +RM K  + P  +TY+ +++  A+ G   EE+L L+ +   
Sbjct: 186 ALINAYGRNGQYKSSLELLDRMKKERVSPSILTYNTVINSCARGGLDWEELLGLFAQMRH 245

Query: 286 SGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGL 345
            G + D + ++ L       G  D    V + M   G+ P++  Y+ L+E  GK  +   
Sbjct: 246 EGIQADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNRLEK 305

Query: 346 ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405
              L  EM   G  PD  +   L++ + ++   K+A+ ++ +M+      +   Y+ LLN
Sbjct: 306 VSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILLN 365

Query: 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
           +    G  ++   LF +MK+S+  +P+  +Y  ++N++G GG     + LF +M E  V 
Sbjct: 366 LYGRHGRYDDVRDLFLEMKVSN-TEPNAATYNILINVFGEGGYFKEVVTLFHDMVEENVE 424

Query: 466 INVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR 504
            N+     LI   GK    +D  ++     ++GV P  +
Sbjct: 425 PNMETYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSSK 463



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 82/351 (23%), Positives = 155/351 (44%), Gaps = 10/351 (2%)

Query: 260 YSAILDVYAKSGKVEEVLSLYERGVASGW-KPDPIAFSVLGKMFGESGDYDGIRYVLQEM 318
           ++ +   +A+ G  +  L L++      W KP+   ++++  + G  G  +  + +  EM
Sbjct: 113 FALVFKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMIGVLGREGLLEKCQEIFDEM 172

Query: 319 KSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK--IYGKAR 376
            S GV P++  +  L+ A G+ G+   +  L D M +  ++P   T   +I     G   
Sbjct: 173 PSHGVAPSVFSFTALINAYGRNGQYKSSLELLDRMKKERVSPSILTYNTVINSCARGGLD 232

Query: 377 WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY 436
           W ++ L L+ +MR      D + YNTLL+ CA  GL +EAE +F  M       PD  +Y
Sbjct: 233 W-EELLGLFAQMRHEGIQADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGIL-PDITTY 290

Query: 437 TAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496
           + ++  +G    ++   EL +EM   G   ++     L++   ++  I + + VF     
Sbjct: 291 SYLVETFGKLNRLEKVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQG 350

Query: 497 RGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAFLNLIEDNSTG--FEN 552
            G  P+      LL++       +DV  +   ++ +N  P    +  LI     G  F+ 
Sbjct: 351 AGCVPNAATYSILLNLYGRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFKE 410

Query: 553 IKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYP 603
           +   F +++++  V+        LI  C    L+E A ++L      G+ P
Sbjct: 411 VVTLFHDMVEEN-VEPNMETYEGLIFACGKGGLHEDAKKILLHMNEKGVVP 460


>gi|159465707|ref|XP_001691064.1| predicted mitochondrial protein [Chlamydomonas reinhardtii]
 gi|158279750|gb|EDP05510.1| predicted mitochondrial protein [Chlamydomonas reinhardtii]
          Length = 630

 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 103/386 (26%), Positives = 175/386 (45%), Gaps = 46/386 (11%)

Query: 124 LKLFARKLNDCDNTEEAFLRAITEIPHQPTRENALLI--LNSLKFWQKSYFFFNWIKSQN 181
           + +  +KL   +   E   RA+    H  +R  ALL+  L+ L   +++   F+W++S N
Sbjct: 1   MAVIIQKLGQNEELPEVIFRAL---HHVDSRAVALLLKDLSRLGKDRRAMELFDWLRSAN 57

Query: 182 ----LFPMETIF-YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCN 236
               L  +  ++ Y  T+    + +      +L NEM    IE +  T++ ++    +C 
Sbjct: 58  ERSPLRQLCDVYSYTATISLCIYSQDVDRAMELMNEMRQRNIERNVHTFTALMNVCIKCG 117

Query: 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS 296
               A+E +  M     MP+ VTY+ ++DVY K G+       +ER +            
Sbjct: 118 KLPLALEIYNNMRAANCMPNVVTYNTLVDVYGKLGR-------WERAI------------ 158

Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356
                           +VL  MK  GV+P L  YNTL+ A     +P  A +++  ++  
Sbjct: 159 ----------------HVLDLMKQEGVEPVLRTYNTLIIACNMCNQPREALAVYQRLLSD 202

Query: 357 GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEA 416
           G TP+  T  ALI  YGK      ALE+++ M         I Y++L++ C   G  E A
Sbjct: 203 GYTPNSTTYNALISAYGKTMQLGKALEVYQEMLRQNMERSVITYSSLISACEKAGQWETA 262

Query: 417 ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
            R+F +M+  D C P+  +Y +++     GG  + A E+FE+M+  G   +V+  T LI 
Sbjct: 263 LRIFNEMQ-QDNCVPNTVTYNSLVTACAQGGQWEKATEVFEQMTAHGCTPDVVTYTALIS 321

Query: 477 CLGKARRIDDLVRVFGVSIDRGVKPD 502
              +  +    ++ FG    +G KPD
Sbjct: 322 AYERGGQWQKALQAFGKMCMQGCKPD 347



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 119/245 (48%), Gaps = 9/245 (3%)

Query: 173 FFNWIKSQNLFPMETIFYN----VTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
            +N +++ N  P   + YN    V  K  R+ R   +++ +  E V   +     TY+T+
Sbjct: 125 IYNNMRAANCMP-NVVTYNTLVDVYGKLGRWERAIHVLDLMKQEGVEPVLR----TYNTL 179

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
           I     CN   EA+  ++R+   G  P+  TY+A++  Y K+ ++ + L +Y+  +    
Sbjct: 180 IIACNMCNQPREALAVYQRLLSDGYTPNSTTYNALISAYGKTMQLGKALEVYQEMLRQNM 239

Query: 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348
           +   I +S L     ++G ++    +  EM+     PN V YN+L+ A  + G+   A  
Sbjct: 240 ERSVITYSSLISACEKAGQWETALRIFNEMQQDNCVPNTVTYNSLVTACAQGGQWEKATE 299

Query: 349 LFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCA 408
           +F++M   G TPD  T TALI  Y +    + AL+ + +M       D I+YN +++   
Sbjct: 300 VFEQMTAHGCTPDVVTYTALISAYERGGQWQKALQAFGKMCMQGCKPDAIVYNAIIDTLW 359

Query: 409 DIGLV 413
           + G++
Sbjct: 360 ETGII 364



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 60/284 (21%), Positives = 119/284 (41%), Gaps = 18/284 (6%)

Query: 333 LLEAMGKAGKPGLARSLFDEMVESG-LTP-----DEKTLTALIKIYGKARWAKDALELWE 386
           LL+ + + GK   A  LFD +  +   +P     D  + TA I +   ++    A+EL  
Sbjct: 33  LLKDLSRLGKDRRAMELFDWLRSANERSPLRQLCDVYSYTATISLCIYSQDVDRAMELMN 92

Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
            MR+     +   +  L+N+C   G +  A  ++ +M+ ++ C P+  +Y  ++++YG  
Sbjct: 93  EMRQRNIERNVHTFTALMNVCIKCGKLPLALEIYNNMRAAN-CMPNVVTYNTLVDVYGKL 151

Query: 447 GNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLC 506
           G  + AI + + M + GV   +     LI       +  + + V+   +  G  P+    
Sbjct: 152 GRWERAIHVLDLMKQEGVEPVLRTYNTLIIACNMCNQPREALAVYQRLLSDGYTPNSTTY 211

Query: 507 GCLLSVVSLCETSEDVGKVITCLQQ-----ANPKLVAFLNLIE--DNSTGFENIKEEFRN 559
             L+S       +  +GK +   Q+         ++ + +LI   + +  +E     F  
Sbjct: 212 NALISAYG---KTMQLGKALEVYQEMLRQNMERSVITYSSLISACEKAGQWETALRIFNE 268

Query: 560 VIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYP 603
           + +D  V     + N L+  C      E+A E+    T +G  P
Sbjct: 269 MQQDNCVPNTVTY-NSLVTACAQGGQWEKATEVFEQMTAHGCTP 311



 Score = 43.5 bits (101), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 36/162 (22%), Positives = 72/162 (44%), Gaps = 7/162 (4%)

Query: 361 DEKTLTALIKIYGKARWAKDALEL--WERMRENKWPM----DFILYNTLLNMCADIGLVE 414
           D + +  L+K   +    + A+EL  W R    + P+    D   Y   +++C     V+
Sbjct: 26  DSRAVALLLKDLSRLGKDRRAMELFDWLRSANERSPLRQLCDVYSYTATISLCIYSQDVD 85

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
            A  L  +M+  +  + + +++TA++N+    G +  A+E++  M       NV+    L
Sbjct: 86  RAMELMNEMRQRNI-ERNVHTFTALMNVCIKCGKLPLALEIYNNMRAANCMPNVVTYNTL 144

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLC 516
           +   GK  R +  + V  +    GV+P  R    L+   ++C
Sbjct: 145 VDVYGKLGRWERAIHVLDLMKQEGVEPVLRTYNTLIIACNMC 186


>gi|255548724|ref|XP_002515418.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545362|gb|EEF46867.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1113

 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 86/271 (31%), Positives = 138/271 (50%), Gaps = 1/271 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D +TY+ +I         D+A+E F +M  +   PD VTY  +LD ++  G +  V   +
Sbjct: 298 DVVTYTVLIDALCTAGKLDDAMELFVKMKASSHKPDRVTYITMLDKFSDCGDLGRVKEFW 357

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
               A G+ PD I F++L     ++G+ D   ++L  M+  GV PNL  YNTL+  + + 
Sbjct: 358 SEMEADGYAPDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRV 417

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
            +   A  LF+ M   G+ P   T    I  YGK+  +  ALE +E+M+      + +  
Sbjct: 418 NRLDDALDLFNNMETLGVVPTAYTYILFIDFYGKSGRSDKALETFEKMKIRGIAPNIVAC 477

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           N  L   A++G + EA+ +F  +K S+   PD+ +Y  M+  Y   G VD AIEL  +MS
Sbjct: 478 NASLYSLAEMGRLREAKVIFNRLK-SNGLAPDSVTYNMMMKCYSKAGQVDEAIELLSDMS 536

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           E     +++    LI  L KA R+D+  ++F
Sbjct: 537 ENQCEPDIIVINSLINTLYKAGRVDEAWKMF 567



 Score =  132 bits (331), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 163/349 (46%), Gaps = 1/349 (0%)

Query: 153 TRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANE 212
           + +  + +LNS+     ++ +FN +         T   N  ++ LR  R+   +  + N 
Sbjct: 90  SSKEVMAVLNSILDPTDAFSYFNSVAEMPFVVHTTETCNHMLEILRIHRRVGDMVVVFNL 149

Query: 213 MVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK 272
           M +  I+ D  TY  I           +    F +M + G   +  +Y+ ++ +  +SG 
Sbjct: 150 MQNQIIKRDLNTYLIIFKGLFIRGGLRQTPFAFGKMREAGFHLNAYSYNGLIHLLLQSGL 209

Query: 273 VEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNT 332
             E L +Y R V  G KP    FS L    G+  D + ++ +L+EM+SLG++PN+  Y  
Sbjct: 210 CREALEMYRRMVLEGLKPSLKTFSALMVATGKRRDTETVKSLLEEMESLGLKPNIYTYTI 269

Query: 333 LLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENK 392
            +  +G+AG+   A  +   M + G  PD  T T LI     A    DA+EL+ +M+ + 
Sbjct: 270 CIRVLGRAGRIDEACRIMKRMEDDGCGPDVVTYTVLIDALCTAGKLDDAMELFVKMKASS 329

Query: 393 WPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNA 452
              D + Y T+L+  +D G +   +  + +M+   Y  PD  ++T ++N     GN+D A
Sbjct: 330 HKPDRVTYITMLDKFSDCGDLGRVKEFWSEMEADGY-APDVITFTILVNALCKAGNIDEA 388

Query: 453 IELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
             L + M + GV  N+     LI  L +  R+DD + +F      GV P
Sbjct: 389 FHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDALDLFNNMETLGVVP 437



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 141/283 (49%), Gaps = 7/283 (2%)

Query: 206 IEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
           +++  +EM ++    D IT++ ++    +    DEA    + M K G++P+  TY+ ++ 
Sbjct: 353 VKEFWSEMEADGYAPDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLIS 412

Query: 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325
              +  ++++ L L+      G  P    + +    +G+SG  D      ++MK  G+ P
Sbjct: 413 GLLRVNRLDDALDLFNNMETLGVVPTAYTYILFIDFYGKSGRSDKALETFEKMKIRGIAP 472

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
           N+V  N  L ++ + G+   A+ +F+ +  +GL PD  T   ++K Y KA    +A+EL 
Sbjct: 473 NIVACNASLYSLAEMGRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIELL 532

Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLF---EDMKLSDYCKPDNYSYTAMLNI 442
             M EN+   D I+ N+L+N     G V+EA ++F   +DMKL+    P   +Y  ++  
Sbjct: 533 SDMSENQCEPDIIVINSLINTLYKAGRVDEAWKMFCRLKDMKLA----PTVVTYNTLIAG 588

Query: 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
            G  G V  A+ELF  M+  G   N +    ++ CL K   +D
Sbjct: 589 LGKEGQVQRAMELFASMTGNGCPPNTITFNTILDCLCKNDEVD 631



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 170/337 (50%), Gaps = 13/337 (3%)

Query: 138  EEAFLRAITEIPHQPTRENA-LLILNSLKFW--QKSYFFFNWIKSQNLFPMETIFYNVTM 194
            +  F+R   E+  +PT E+   LI   L     + ++  F  +K+    P +   YN+ +
Sbjct: 774  QSVFIRFTKELGVKPTLESYNFLIEGFLGVHNDEMAWNLFTEMKNAGCAP-DVFTYNLLL 832

Query: 195  ----KSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYK 250
                KS +    F+L EQ    M+ +  + + IT++ II    + N  D+A++ F  +  
Sbjct: 833  DAHGKSGKINELFELYEQ----MICSSCKPNTITHNIIIANLVKSNSLDKALDLFYDLVS 888

Query: 251  TGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDG 310
                P   TY  +LD   KSG++EE   L+E  V  G +P+   +++L   FG++GD + 
Sbjct: 889  GDFSPTPCTYGPLLDGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILINGFGKTGDVNT 948

Query: 311  IRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK 370
               + + M   G++P+L  Y +L+  + +AG+   A   F+++ ++GL  D      +I 
Sbjct: 949  ACELFKRMVREGIRPDLKSYTSLVGCLCEAGRVDDALHYFEKLKQTGLYLDSIAYNLMID 1008

Query: 371  IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCK 430
              G++   ++AL L++ M+      D   YN+L+      G+VE+A +L+E+++     +
Sbjct: 1009 GLGRSHRIEEALTLYDEMQSRGINPDLFTYNSLILNLGVAGMVEQAGKLYEELQFIGL-E 1067

Query: 431  PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
            P+ ++Y A++  Y   GN D+A  +++ M   G + N
Sbjct: 1068 PNVFTYNALIRGYSMSGNSDSAYAVYKRMMVGGCSPN 1104



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 149/313 (47%), Gaps = 1/313 (0%)

Query: 190  YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
            YN  ++        ++   L  EM +     D  TY+ ++    +    +E  E +E+M 
Sbjct: 793  YNFLIEGFLGVHNDEMAWNLFTEMKNAGCAPDVFTYNLLLDAHGKSGKINELFELYEQMI 852

Query: 250  KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
             +   P+ +T++ I+    KS  +++ L L+   V+  + P P  +  L     +SG  +
Sbjct: 853  CSSCKPNTITHNIIIANLVKSNSLDKALDLFYDLVSGDFSPTPCTYGPLLDGLLKSGRLE 912

Query: 310  GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
              + + +EM   G +PN  +YN L+   GK G    A  LF  MV  G+ PD K+ T+L+
Sbjct: 913  EAKELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTACELFKRMVREGIRPDLKSYTSLV 972

Query: 370  KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
                +A    DAL  +E++++    +D I YN +++       +EEA  L+++M+ S   
Sbjct: 973  GCLCEAGRVDDALHYFEKLKQTGLYLDSIAYNLMIDGLGRSHRIEEALTLYDEMQ-SRGI 1031

Query: 430  KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
             PD ++Y +++   G  G V+ A +L+EE+  +G+  NV     LI+    +   D    
Sbjct: 1032 NPDLFTYNSLILNLGVAGMVEQAGKLYEELQFIGLEPNVFTYNALIRGYSMSGNSDSAYA 1091

Query: 490  VFGVSIDRGVKPD 502
            V+   +  G  P+
Sbjct: 1092 VYKRMMVGGCSPN 1104



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 133/294 (45%), Gaps = 38/294 (12%)

Query: 239  DEAIEW--FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS 296
            ++ + W  F  M   G  PD  TY+ +LD + KSGK+ E+  LYE+ + S  KP+ I  +
Sbjct: 805  NDEMAWNLFTEMKNAGCAPDVFTYNLLLDAHGKSGKINELFELYEQMICSSCKPNTITHN 864

Query: 297  VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356
            ++     +S   D    +  ++ S    P    Y  LL+ + K+G+   A+ LF+EMV+ 
Sbjct: 865  IIIANLVKSNSLDKALDLFYDLVSGDFSPTPCTYGPLLDGLLKSGRLEEAKELFEEMVDY 924

Query: 357  GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEA 416
            G  P+                                     +YN L+N     G V  A
Sbjct: 925  GCRPNNA-----------------------------------IYNILINGFGKTGDVNTA 949

Query: 417  ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
              LF+ M + +  +PD  SYT+++      G VD+A+  FE++ + G+ ++ +    +I 
Sbjct: 950  CELFKRM-VREGIRPDLKSYTSLVGCLCEAGRVDDALHYFEKLKQTGLYLDSIAYNLMID 1008

Query: 477  CLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQ 530
             LG++ RI++ + ++     RG+ PD      L+  + +    E  GK+   LQ
Sbjct: 1009 GLGRSHRIEEALTLYDEMQSRGINPDLFTYNSLILNLGVAGMVEQAGKLYEELQ 1062



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 134/316 (42%), Gaps = 42/316 (13%)

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
            E M   GL P+  TY+  + V  ++G+++E   + +R    G  PD + ++VL      
Sbjct: 252 LEEMESLGLKPNIYTYTICIRVLGRAGRIDEACRIMKRMEDDGCGPDVVTYTVLIDALCT 311

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
           +G  D    +  +MK+   +P+ V Y T+L+     G  G  +  + EM   G  PD  T
Sbjct: 312 AGKLDDAMELFVKMKASSHKPDRVTYITMLDKFSDCGDLGRVKEFWSEMEADGYAPDVIT 371

Query: 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
            T L+    KA    +A  L + MR+     +   YNTL++    +  +++A  LF +M+
Sbjct: 372 FTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDALDLFNNME 431

Query: 425 LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTC----------- 473
                 P  Y+Y   ++ YG  G  D A+E FE+M   G+A N++ C             
Sbjct: 432 TLGVV-PTAYTYILFIDFYGKSGRSDKALETFEKMKIRGIAPNIVACNASLYSLAEMGRL 490

Query: 474 ------------------------LIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCL 509
                                   +++C  KA ++D+ + +     +   +PD      +
Sbjct: 491 REAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIELLSDMSENQCEPD------I 544

Query: 510 LSVVSLCETSEDVGKV 525
           + + SL  T    G+V
Sbjct: 545 IVINSLINTLYKAGRV 560



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 154/335 (45%), Gaps = 8/335 (2%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           +++   + ++ Q + P    +  +    LR  R    ++ L N M +  +     TY   
Sbjct: 387 EAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDALD-LFNNMETLGVVPTAYTYILF 445

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
           I    +    D+A+E FE+M   G+ P+ V  +A L   A+ G++ E   ++ R  ++G 
Sbjct: 446 IDFYGKSGRSDKALETFEKMKIRGIAPNIVACNASLYSLAEMGRLREAKVIFNRLKSNGL 505

Query: 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348
            PD + ++++ K + ++G  D    +L +M     +P+++V N+L+  + KAG+   A  
Sbjct: 506 APDSVTYNMMMKCYSKAGQVDEAIELLSDMSENQCEPDIIVINSLINTLYKAGRVDEAWK 565

Query: 349 LFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCA 408
           +F  + +  L P   T   LI   GK    + A+EL+  M  N  P + I +NT+L+   
Sbjct: 566 MFCRLKDMKLAPTVVTYNTLIAGLGKEGQVQRAMELFASMTGNGCPPNTITFNTILDCLC 625

Query: 409 DIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINV 468
               V+ A ++   M   + C PD  ++  +++       V +AI LF +M ++     V
Sbjct: 626 KNDEVDLALKMLYKMTTMN-CMPDVLTFNTIIHGLVIEKRVSDAIWLFHQMKKMLTPDCV 684

Query: 469 MGCTCLIQCLGKA------RRIDDLVRVFGVSIDR 497
             CT L   +         +  +D V   GV +DR
Sbjct: 685 TLCTLLPGVVKNGLMEDAFKIAEDFVHRLGVYVDR 719



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 85/161 (52%)

Query: 208  QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
            +L   MV   I  D  +Y++++ C       D+A+ +FE++ +TGL  D + Y+ ++D  
Sbjct: 951  ELFKRMVREGIRPDLKSYTSLVGCLCEAGRVDDALHYFEKLKQTGLYLDSIAYNLMIDGL 1010

Query: 268  AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
             +S ++EE L+LY+   + G  PD   ++ L    G +G  +    + +E++ +G++PN+
Sbjct: 1011 GRSHRIEEALTLYDEMQSRGINPDLFTYNSLILNLGVAGMVEQAGKLYEELQFIGLEPNV 1070

Query: 328  VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
              YN L+     +G    A +++  M+  G +P+  T   L
Sbjct: 1071 FTYNALIRGYSMSGNSDSAYAVYKRMMVGGCSPNTGTFAQL 1111



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/263 (23%), Positives = 103/263 (39%), Gaps = 42/263 (15%)

Query: 263 ILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG 322
           IL ++ + G +  V +L +  +    K D   + ++ K     G      +   +M+  G
Sbjct: 133 ILRIHRRVGDMVVVFNLMQNQII---KRDLNTYLIIFKGLFIRGGLRQTPFAFGKMREAG 189

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382
              N   YN L+  + ++G    A  ++  MV  GL P  KT +AL+   GK R  +   
Sbjct: 190 FHLNAYSYNGLIHLLLQSGLCREALEMYRRMVLEGLKPSLKTFSALMVATGKRRDTETVK 249

Query: 383 ELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNI 442
            L E M                     +GL                 KP+ Y+YT  + +
Sbjct: 250 SLLEEMES-------------------LGL-----------------KPNIYTYTICIRV 273

Query: 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            G  G +D A  + + M + G   +V+  T LI  L  A ++DD + +F        KPD
Sbjct: 274 LGRAGRIDEACRIMKRMEDDGCGPDVVTYTVLIDALCTAGKLDDAMELFVKMKASSHKPD 333

Query: 503 DRLCGCLLSVVSLCETSEDVGKV 525
                 +L   S C    D+G+V
Sbjct: 334 RVTYITMLDKFSDC---GDLGRV 353



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 68/128 (53%), Gaps = 5/128 (3%)

Query: 173  FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLA--NEMVSNEIELDNITYSTIIT 230
            +F  +K   L+ +++I YN+ +  L  GR  ++ E L   +EM S  I  D  TY+++I 
Sbjct: 987  YFEKLKQTGLY-LDSIAYNLMIDGL--GRSHRIEEALTLYDEMQSRGINPDLFTYNSLIL 1043

Query: 231  CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
                  + ++A + +E +   GL P+  TY+A++  Y+ SG  +   ++Y+R +  G  P
Sbjct: 1044 NLGVAGMVEQAGKLYEELQFIGLEPNVFTYNALIRGYSMSGNSDSAYAVYKRMMVGGCSP 1103

Query: 291  DPIAFSVL 298
            +   F+ L
Sbjct: 1104 NTGTFAQL 1111


>gi|222630937|gb|EEE63069.1| hypothetical protein OsJ_17877 [Oryza sativa Japonica Group]
          Length = 702

 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 98/370 (26%), Positives = 171/370 (46%), Gaps = 12/370 (3%)

Query: 142 LRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSL-RFG 200
           +RA T + H  +R            ++++   F  ++ Q + P   + YNV +    R G
Sbjct: 89  VRAYTTVLHALSRAGR---------YERALQLFAELRRQGVVPT-IVTYNVVLDVYGRMG 138

Query: 201 RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTY 260
           R +  I  L  EM +  +E D+ T ST+I    R  L D+A+ +FE +   G +P  VTY
Sbjct: 139 RSWPRIVALLEEMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTY 198

Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
           +A+L V+ K+G   E L + +    SG +PD + ++ L   +  +G ++     L  M S
Sbjct: 199 NALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTS 258

Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380
            G+ PN   YNT++ A    G+   A +LFD M ++G  P+  T   +  + GK      
Sbjct: 259 KGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTA 318

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
            LE+ E M  +    + + +NT+L +C   G+ +   R+   MK S   +    +Y  ++
Sbjct: 319 MLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMK-SCGVELSRDTYNTLI 377

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
           + YG  G+   A ++++EM   G    +     L+  L +         +    +  G K
Sbjct: 378 SAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFK 437

Query: 501 PDDRLCGCLL 510
           P+D+    LL
Sbjct: 438 PNDQSYSLLL 447



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/298 (28%), Positives = 140/298 (46%), Gaps = 2/298 (0%)

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKV-EEVLS 278
           LD   Y+T++    R   ++ A++ F  + + G++P  VTY+ +LDVY + G+    +++
Sbjct: 87  LDVRAYTTVLHALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVA 146

Query: 279 LYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMG 338
           L E   A+G +PD    S +    G  G  D      +++K+ G  P +V YN LL+  G
Sbjct: 147 LLEEMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFG 206

Query: 339 KAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFI 398
           KAG    A  +  EM +SG  PD  T   L   Y +A + ++A +  + M       +  
Sbjct: 207 KAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTF 266

Query: 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458
            YNT++   A++G V+EA  LF+ MK + Y  P+  +Y  +  + G        +E+ EE
Sbjct: 267 TYNTVMTAYANVGRVDEALALFDRMKKNGYV-PNVNTYNLIFGMLGKKSRFTAMLEMLEE 325

Query: 459 MSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLC 516
           MS  G   N +    ++   GK    D + RV       GV+        L+S    C
Sbjct: 326 MSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRC 383



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 143/296 (48%), Gaps = 1/296 (0%)

Query: 206 IEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
           + ++ N M S  +EL   TY+T+I+   RC     A + ++ M  +G  P   TY+A+L+
Sbjct: 354 VTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLN 413

Query: 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325
           V ++ G      S+  + + +G+KP+  ++S+L + + + G+  GI  + +E+    + P
Sbjct: 414 VLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIFP 473

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
           + V+  TL+ A  K  +       F E+   G  PD     +++ +Y K      A E++
Sbjct: 474 SWVILRTLVIANFKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMF 533

Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445
           + ++++    D I YN+L++M A      EAE++ + +K S   KPD  SY  ++N +  
Sbjct: 534 DSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLK-SSQVKPDVVSYNTVINGFCK 592

Query: 446 GGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
            G +  A  +  EM   G+A  V+    L+         ++   V    I   +KP
Sbjct: 593 QGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEAREVVNYMIHHNLKP 648



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 97/402 (24%), Positives = 168/402 (41%), Gaps = 76/402 (18%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLA--NEMVSNEIELDNITYSTIIT 230
           FF  +K++   P   + YN  ++   FG+     E L    EM  +  + D +TY+ +  
Sbjct: 182 FFEDLKARGHVPC-VVTYNALLQV--FGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAG 238

Query: 231 CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
              R   F+EA +  + M   GL+P+  TY+ ++  YA  G+V+E L+L++R   +G+ P
Sbjct: 239 TYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVP 298

Query: 291 D----PIAFSVLGK-------------------------------MFGESGDYDGIRYVL 315
           +     + F +LGK                               + G+ G  D +  VL
Sbjct: 299 NVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVL 358

Query: 316 QEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA 375
             MKS GV+ +   YNTL+ A G+ G    A  ++DEM+ SG TP   T  AL+ +  + 
Sbjct: 359 NGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQ 418

Query: 376 RWAKDALELWERMRENKWPMDFILYNTLLNMCADIG------------------------ 411
                A  +  +M +N +  +   Y+ LL   A  G                        
Sbjct: 419 GDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIFPSWVIL 478

Query: 412 -----------LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
                       +E  E+ F+++K   Y KPD   + +ML +Y   G    A E+F+ + 
Sbjct: 479 RTLVIANFKCRRLEGVEKAFQEVKAQGY-KPDLVIFNSMLAMYAKNGLYSKATEMFDSIK 537

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           + G++ +++    L+    K+    +  ++        VKPD
Sbjct: 538 QSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPD 579



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 112/222 (50%), Gaps = 1/222 (0%)

Query: 182 LFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEA 241
           +FP   I   + + + +  R+ + +E+   E+ +   + D + +++++    +  L+ +A
Sbjct: 471 IFPSWVILRTLVIANFKC-RRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKA 529

Query: 242 IEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKM 301
            E F+ + ++GL PD +TY++++D+YAKS +  E   + ++  +S  KPD ++++ +   
Sbjct: 530 TEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVING 589

Query: 302 FGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD 361
           F + G     + +L EM + G+ P +V Y+TL+           AR + + M+   L P 
Sbjct: 590 FCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEAREVVNYMIHHNLKPM 649

Query: 362 EKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
           E T   ++  Y KA+   +A E    + +     D  L + L
Sbjct: 650 ELTYRRVVDSYCKAKRYDEAREFLSEISDTDQNFDQKLQHML 691



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 100/219 (45%), Gaps = 1/219 (0%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           Y++ ++    G     IE +  E+    I    +   T++    +C   +   + F+ + 
Sbjct: 443 YSLLLQCYAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIANFKCRRLEGVEKAFQEVK 502

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
             G  PD V ++++L +YAK+G   +   +++    SG  PD I ++ L  M+ +S +  
Sbjct: 503 AQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNSLMDMYAKSNESW 562

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               +L+++KS  V+P++V YNT++    K G    A+ +  EM+  G+ P   T   L+
Sbjct: 563 EAEKILKQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLV 622

Query: 370 KIYGKARWAKDALELWERM-RENKWPMDFILYNTLLNMC 407
             Y       +A E+   M   N  PM+      + + C
Sbjct: 623 GGYASLEMFNEAREVVNYMIHHNLKPMELTYRRVVDSYC 661


>gi|297733858|emb|CBI15105.3| unnamed protein product [Vitis vinifera]
          Length = 627

 Score =  142 bits (358), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 124/488 (25%), Positives = 213/488 (43%), Gaps = 69/488 (14%)

Query: 199 FGR--QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPD 256
           FG+  + + + +L  EM S     D  +Y+ ++    +     EA+  F +M   G +P+
Sbjct: 55  FGKLNRLEKVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPN 114

Query: 257 EVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQ 316
             TYS +L++Y + G+ ++V  L+     S  +P+   +++L  +FGE G +  +  +  
Sbjct: 115 AATYSILLNLYGRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFKEVVTLFH 174

Query: 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
           +M    V+PN+  Y  L+ A GK G    A+ +   M E G+ P  K  T +I+ YG+A 
Sbjct: 175 DMVEENVEPNMETYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSSKAYTGVIEAYGQAA 234

Query: 377 WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY-------- 428
             ++AL  +  M E         YN+L+ M A  GL +E+E +   M  S          
Sbjct: 235 LYEEALVAFNTMNEVGSKPTVETYNSLIQMFAKGGLYKESEAILLKMGQSGVARNRDTFN 294

Query: 429 --------------------------CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
                                     C PD  +  A+L++Y   G V+ + E F E+  L
Sbjct: 295 GVIEAFRQGGQFEEAIKAYVEMEKARCDPDEQTLEAVLSVYCFAGLVEESEEQFGEIKAL 354

Query: 463 GVAINVMGCTCLIQCL-GKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSED 521
           G+  +VM C C++  +  KA R DD  ++        V    ++ G ++      +  +D
Sbjct: 355 GILPSVM-CYCMMLAVYAKADRWDDAHQLLDEMFTNRVSNIHQVIGQMIR----GDYDDD 409

Query: 522 VGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICR 581
                     +N ++V ++         FE +K E         +  R  F N L++   
Sbjct: 410 ----------SNWQMVEYV---------FEKLKSE------GCSLGVR--FYNTLLEALW 442

Query: 582 NRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAKIVL 641
                ERA  +L   T  GL+P L  K    WS+DV  +  GAA TA+  W+  + ++ +
Sbjct: 443 WLGQKERATRVLNEATKRGLFPELFRKNKLVWSVDVHRMWEGAACTAISVWLNNMHEMFI 502

Query: 642 REEVLPQL 649
             + LPQL
Sbjct: 503 SGDDLPQL 510



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 128/264 (48%), Gaps = 1/264 (0%)

Query: 218 IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL 277
           I+ D +TY+T+++   R  L DEA   F  M + G++PD  TYS +++ + K  ++E+V 
Sbjct: 6   IQADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNRLEKVS 65

Query: 278 SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
            L +   + G  PD  +++VL +   +SG       V ++M+  G  PN   Y+ LL   
Sbjct: 66  ELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILLNLY 125

Query: 338 GKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDF 397
           G+ G+    R LF EM  S   P+  T   LI ++G+  + K+ + L+  M E     + 
Sbjct: 126 GRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFKEVVTLFHDMVEENVEPNM 185

Query: 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE 457
             Y  L+  C   GL E+A+++   M       P + +YT ++  YG     + A+  F 
Sbjct: 186 ETYEGLIFACGKGGLHEDAKKILLHMNEKGVV-PSSKAYTGVIEAYGQAALYEEALVAFN 244

Query: 458 EMSELGVAINVMGCTCLIQCLGKA 481
            M+E+G    V     LIQ   K 
Sbjct: 245 TMNEVGSKPTVETYNSLIQMFAKG 268



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 126/254 (49%), Gaps = 1/254 (0%)

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M   G+  D VTY+ +L   A+ G  +E   ++      G  PD   +S L + FG+   
Sbjct: 1   MRHEGIQADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNR 60

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
            + +  +L+EM+S G  P++  YN LLEA  ++G    A  +F +M  +G  P+  T + 
Sbjct: 61  LEKVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSI 120

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           L+ +YG+     D  +L+  M+ +    +   YN L+N+  + G  +E   LF DM + +
Sbjct: 121 LLNLYGRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFKEVVTLFHDM-VEE 179

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
             +P+  +Y  ++   G GG  ++A ++   M+E GV  +    T +I+  G+A   ++ 
Sbjct: 180 NVEPNMETYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSSKAYTGVIEAYGQAALYEEA 239

Query: 488 VRVFGVSIDRGVKP 501
           +  F    + G KP
Sbjct: 240 LVAFNTMNEVGSKP 253



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 94/220 (42%), Gaps = 6/220 (2%)

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           MR      D + YNTLL+ CA  GL +EAE +F  M       PD  +Y+ ++  +G   
Sbjct: 1   MRHEGIQADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGIL-PDITTYSYLVETFGKLN 59

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCG 507
            ++   EL +EM   G   ++     L++   ++  I + + VF      G  P+     
Sbjct: 60  RLEKVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYS 119

Query: 508 CLLSVVSLCETSEDVGKVITCLQQAN--PKLVAFLNLIEDNSTG--FENIKEEFRNVIKD 563
            LL++       +DV  +   ++ +N  P    +  LI     G  F+ +   F +++++
Sbjct: 120 ILLNLYGRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFKEVVTLFHDMVEE 179

Query: 564 TEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYP 603
             V+        LI  C    L+E A ++L      G+ P
Sbjct: 180 N-VEPNMETYEGLIFACGKGGLHEDAKKILLHMNEKGVVP 218


>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
 gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
          Length = 659

 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 101/354 (28%), Positives = 167/354 (47%), Gaps = 5/354 (1%)

Query: 152 PTRENALLILNSLKFWQK---SYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           PT     ++++ L   Q+   +Y   + +  ++  P +   YN  +  L    +      
Sbjct: 90  PTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHP-DAAVYNCLIAGLCKMGKIDAARN 148

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           +   M+      D ITY+++I    + N  DEA +  E+M ++GL PD V Y+A+L+   
Sbjct: 149 VLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKESGLTPDTVAYNALLNGLC 208

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           K  ++EEV  L E  V +G +PD  +++ +     ESG Y+    +L++M      P++V
Sbjct: 209 KQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILEKMIEKKCGPDVV 268

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            YN+L++   K  K   A  L ++MV     P   T T LI  + +A    DA  + E M
Sbjct: 269 TYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADRLADAYRVMEDM 328

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
            +     D + YN LL+     G +EEA  L E M   D C PD  +Y+ ++N     G 
Sbjct: 329 FKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKD-CAPDVVTYSILVNGLCKLGK 387

Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           VD+A  L E M E G   N++    +I    KA ++D+  +V  +  +    PD
Sbjct: 388 VDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPD 441



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 105/389 (26%), Positives = 166/389 (42%), Gaps = 64/389 (16%)

Query: 177 IKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCN 236
           +K   L P +T+ YN  +  L    Q + + +L  EMV    E D  +Y+T++ C     
Sbjct: 188 MKESGLTP-DTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESG 246

Query: 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS 296
            ++EA +  E+M +    PD VTY++++D + K  K++E   L E  V     P  I ++
Sbjct: 247 KYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYT 306

Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356
            L   F  +        V+++M   G+ P+LV YN LL+ + KAGK   A  L + MVE 
Sbjct: 307 TLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEK 366

Query: 357 GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEA 416
              PD  T + L+    K     DA  L E M E     + + +NT+++     G V+E 
Sbjct: 367 DCAPDVVTYSILVNGLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEG 426

Query: 417 ERLFEDMK--------------LSDYCK--------------PDNYSYTAMLNIYGSGGN 448
            ++ E MK              +  YCK              PD  SY++ML    S G 
Sbjct: 427 HKVLELMKEVSCTPDVVTYSTLIDGYCKANRMQDAFAILGISPDKASYSSMLEGLCSTGK 486

Query: 449 V-----------------------------------DNAIELFEEMSELGVAINVMGCTC 473
           V                                   D A+++ + MSE G   N+   + 
Sbjct: 487 VEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDEALKMLQVMSERGCEPNLYTYSI 546

Query: 474 LIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           LI  L K +R++D + V  V +++G  PD
Sbjct: 547 LINGLCKTKRVEDAINVLDVMLEKGCVPD 575



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 92/352 (26%), Positives = 152/352 (43%), Gaps = 6/352 (1%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           + Y FF    S    P  + +  +     R G   +++ ++ANEM++     D IT++TI
Sbjct: 7   EGYSFFRERFSDPSKPSNSTYGALITGFSRAGNS-KMVLEIANEMLARRFSPDVITHNTI 65

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
           +    +    D A+  F    K    P   TY  ++    +  +++E   L +  +    
Sbjct: 66  LKAYCQIGDLDRALSHFRG--KMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDC 123

Query: 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348
            PD   ++ L     + G  D  R VL+ M      P+++ Y +L+    +      AR 
Sbjct: 124 HPDAAVYNCLIAGLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARK 183

Query: 349 LFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCA 408
           L ++M ESGLTPD     AL+    K    ++  +L E M E     D   YNT++    
Sbjct: 184 LMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLC 243

Query: 409 DIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINV 468
           + G  EEA ++ E M +   C PD  +Y ++++ +     +D A  L E+M     A  V
Sbjct: 244 ESGKYEEAGKILEKM-IEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTV 302

Query: 469 MGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSE 520
           +  T LI    +A R+ D  RV       G+ PD     CLL    LC+  +
Sbjct: 303 ITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLD--GLCKAGK 352



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 89/381 (23%), Positives = 152/381 (39%), Gaps = 65/381 (17%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + YN  M       +    E+L  +MV        ITY+T+I    R +   +A    
Sbjct: 266 DVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADRLADAYRVM 325

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL------- 298
           E M+K G+ PD VTY+ +LD   K+GK+EE   L E  V     PD + +S+L       
Sbjct: 326 EDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKL 385

Query: 299 GKM----------------------------FGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
           GK+                            F ++G  D    VL+ MK +   P++V Y
Sbjct: 386 GKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTY 445

Query: 331 NTLLEAMGKA-----------------------------GKPGLARSLFDEMVESGLTPD 361
           +TL++   KA                             GK   A+ + D M + G  P 
Sbjct: 446 STLIDGYCKANRMQDAFAILGISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPT 505

Query: 362 EKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFE 421
                 +I          +AL++ + M E     +   Y+ L+N       VE+A  +  
Sbjct: 506 SSHYALIIGGLCDVERGDEALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINVL- 564

Query: 422 DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
           D+ L   C PD  +YT++++ +     +D A + F+ M + G   + +    LI    ++
Sbjct: 565 DVMLEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQS 624

Query: 482 RRIDDLVRVFGVSIDRGVKPD 502
             ++  + V  + +++G  PD
Sbjct: 625 GNVEKAIEVMQLMLEKGCNPD 645



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 86/362 (23%), Positives = 153/362 (42%), Gaps = 16/362 (4%)

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           E   +F   +     P   TY A++  ++++G  + VL +    +A  + PD I  + + 
Sbjct: 7   EGYSFFRERFSDPSKPSNSTYGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHNTIL 66

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
           K + + GD D  R +      +   P    Y  L+  + +  +   A  L DEM++    
Sbjct: 67  KAYCQIGDLD--RALSHFRGKMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCH 124

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
           PD      LI    K      A  + + M E     D I Y +L+  C     ++EA +L
Sbjct: 125 PDAAVYNCLIAGLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKL 184

Query: 420 FEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479
            E MK S    PD  +Y A+LN       ++   +L EEM E G   +      ++ CL 
Sbjct: 185 MEKMKESGL-TPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLC 243

Query: 480 KARRIDDLVRVFGVSIDRGVKPD----DRLCGCLLSVVSLCETSEDVGKVITCLQQANPK 535
           ++ + ++  ++    I++   PD    + L      V  + E    +  ++   ++  P 
Sbjct: 244 ESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVG--RRCAPT 301

Query: 536 LVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRP---FCNCLID-ICRNRNLNERAHE 591
           ++ +  LI   S   + + + +R V++D       P     NCL+D +C+   L E AHE
Sbjct: 302 VITYTTLIGGFSRA-DRLADAYR-VMEDMFKAGISPDLVTYNCLLDGLCKAGKL-EEAHE 358

Query: 592 LL 593
           LL
Sbjct: 359 LL 360



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 65/132 (49%)

Query: 239 DEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
           DEA++  + M + G  P+  TYS +++   K+ +VE+ +++ +  +  G  PD   ++ L
Sbjct: 523 DEALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEKGCVPDVATYTSL 582

Query: 299 GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
              F +    D      + M+  G +P+ + YN L+    ++G    A  +   M+E G 
Sbjct: 583 IDGFCKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQSGNVEKAIEVMQLMLEKGC 642

Query: 359 TPDEKTLTALIK 370
            PD  T  +L++
Sbjct: 643 NPDAATYFSLMR 654



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 61/114 (53%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           TYS +I    +    ++AI   + M + G +PD  TY++++D + K  K++     ++  
Sbjct: 543 TYSILINGLCKTKRVEDAINVLDVMLEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTM 602

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
             SG +PD +A+++L   F +SG+ +    V+Q M   G  P+   Y +L+ ++
Sbjct: 603 RDSGCEPDKLAYNILISGFCQSGNVEKAIEVMQLMLEKGCNPDAATYFSLMRSL 656



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 79/187 (42%)

Query: 218 IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL 277
           I  D  +YS+++         +EA E  + M K G  P    Y+ I+       + +E L
Sbjct: 467 ISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDEAL 526

Query: 278 SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
            + +     G +P+   +S+L     ++   +    VL  M   G  P++  Y +L++  
Sbjct: 527 KMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEKGCVPDVATYTSLIDGF 586

Query: 338 GKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDF 397
            K  K   A   F  M +SG  PD+     LI  + ++   + A+E+ + M E     D 
Sbjct: 587 CKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQSGNVEKAIEVMQLMLEKGCNPDA 646

Query: 398 ILYNTLL 404
             Y +L+
Sbjct: 647 ATYFSLM 653


>gi|297826581|ref|XP_002881173.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297327012|gb|EFH57432.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 917

 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 127/569 (22%), Positives = 245/569 (43%), Gaps = 46/569 (8%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           P + T  + L + +    W+ +   F+ + ++ +   +   YN  + ++  G Q  L  +
Sbjct: 337 PDRITFNSLLAVCSRGGLWEAARNLFDEMSNRRI-EQDVFSYNTLLDAICKGGQMDLAFE 395

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           +  +M +  I  + ++YST+I    +   FDEA+  F  M    +  D V+Y+ +L +Y 
Sbjct: 396 ILAQMPAKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLNIALDRVSYNTLLSIYT 455

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           K G+ EE L +     + G K D + ++ L   +G+ G YD ++ V  EMK   V PNL+
Sbjct: 456 KVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFAEMKREHVLPNLL 515

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            Y+TL++   K G    A  +F E   +GL  D    +ALI    K      A+ L + M
Sbjct: 516 TYSTLIDGYSKGGLYKEAMEVFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEM 575

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDN--YSYTAMLNIYGSG 446
            +     + + YN++++       +E +         +DY    +  +S +A+  +  + 
Sbjct: 576 TKEGISPNVVTYNSIIDAFGRSATMERS---------ADYSNGGSLPFSSSALSELTETE 626

Query: 447 GNVDNAIELFEEMSELGVAINVMGC-------TCLIQCLGKARRIDDLVRVFGVSIDRGV 499
           GN    I+LF +++  G       C       +C+++   K  +++             +
Sbjct: 627 GN--RVIQLFGQLTSEGNNRMTKDCKEGMQELSCILEVFRKMHQLE-------------I 671

Query: 500 KPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENI---KEE 556
           KP+      +L+  S C + ED   ++  L+  + K+   ++ +       EN+    + 
Sbjct: 672 KPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNKVYGVVHGLLMGQR--ENVWLQAQS 729

Query: 557 FRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLD 616
             + + + +      F N L D+  +    +R  EL+    L G    +      +  LD
Sbjct: 730 LFDKVNEMDGSTASAFYNALTDMLWHFG-QKRGAELV---ALEGRSRQVWENVWSDSCLD 785

Query: 617 VRSLSVGAAQTALEEWMWTLAKIVLREEVLPQLFLAETGTGTHKFSQG---LATAFASHV 673
           +  +S GAA+  +  W+  +  IV     LP++    TG G H    G   L  A    +
Sbjct: 786 LHLMSSGAARAMVHAWLLNIRSIVYEGHELPKVLSILTGWGKHSKVVGDGALKRAVEVLL 845

Query: 674 NKLAAPFRQSEGKAGCFVATREDLVSWVQ 702
             + APF  S+   G F ++   + +W++
Sbjct: 846 RGMDAPFHLSKCNMGRFTSSGSVVATWLR 874



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 92/358 (25%), Positives = 160/358 (44%), Gaps = 13/358 (3%)

Query: 231 CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
           C K    ++ A++   R  + G +      SA++    + GKV     ++E   + G+  
Sbjct: 212 CDKAVGFYEFAVKRERRKNEQGKLA-----SAMISTLGRYGKVTIAKRIFETAFSGGYGN 266

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP-GLARSL 349
              AFS L   +G SG ++    V   MK  G++PNLV YN +++A GK G         
Sbjct: 267 TVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKF 326

Query: 350 FDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCAD 409
           FDEM  + + PD  T  +L+ +  +    + A  L++ M   +   D   YNTLL+    
Sbjct: 327 FDEMQRNCVQPDRITFNSLLAVCSRGGLWEAARNLFDEMSNRRIEQDVFSYNTLLDAICK 386

Query: 410 IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVM 469
            G ++ A  +   M  +    P+  SY+ +++ +   G  D A+ LF EM  L +A++ +
Sbjct: 387 GGQMDLAFEILAQMP-AKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLNIALDRV 445

Query: 470 GCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCL 529
               L+    K  R ++ + +       G+K D      LL         ++V KV   +
Sbjct: 446 SYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFAEM 505

Query: 530 QQAN--PKLVAFLNLIEDNSTG--FENIKEEFRNVIKDTEVDARRPFCNCLID-ICRN 582
           ++ +  P L+ +  LI+  S G  ++   E FR   K   + A     + LID +C+N
Sbjct: 506 KREHVLPNLLTYSTLIDGYSKGGLYKEAMEVFRE-FKSAGLRADVVLYSALIDALCKN 562


>gi|224103707|ref|XP_002313163.1| predicted protein [Populus trichocarpa]
 gi|222849571|gb|EEE87118.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 104/451 (23%), Positives = 202/451 (44%), Gaps = 14/451 (3%)

Query: 148 IPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIE 207
           +P + T    +        ++++   F  +KS    P + + YN  +      R+ +   
Sbjct: 101 LPDEYTYNTLITCCRRGSLYEEAAAVFEDMKSMGFVP-DKVTYNTLLDVYGKSRRIKEAI 159

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           ++  EM  N      +TY+++I+   R  L +EA+E   +M + G+  D  TY+A+L  +
Sbjct: 160 EVLREMEVNGCSPSIVTYNSLISAYARDGLLEEAMELKNQMVERGIKLDVFTYTAMLSGF 219

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            ++GK E  + ++E    +G KP+   F+ L KM G  G +  +  V +E+K     P++
Sbjct: 220 VRTGKDESAMRVFEEMRTAGCKPNICTFNALIKMHGNRGKFAEMMKVFEEIKICCCVPDI 279

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
           V +NTLL   G+ G       +F EM   G  P+  T   LI  Y +      A+ +++R
Sbjct: 280 VTWNTLLAVFGQNGMDSEVSGVFKEMKRVGFVPERDTYNTLISAYSRCGSFDQAMAMYKR 339

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           M +     D   YN +L   A  GL E++E++  +M+    CKP+  ++ ++L+ Y +G 
Sbjct: 340 MLDTGITPDLSTYNAVLAALARGGLWEQSEKILAEMQ-DGMCKPNELTHCSLLHAYANGK 398

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCG 507
            +   + L EE+    +  + +    L+    K   + +  R F     +G  PD     
Sbjct: 399 EIGRMLALAEEICSGVIEPHAVLLKTLVLVNSKCDLLLEAERAFLELKRKGFSPDLSTLN 458

Query: 508 CLLSVVSLCETSEDVGKVITCLQQAN--PKLVAF--LNLIEDNSTGFENIKEEFRNVIKD 563
            ++++    +      +++  ++++   P L  +  L  +   S  FE  +E    V+K+
Sbjct: 459 AMIAIYGRRQMVTKTNEILNFMKESGFTPSLATYNSLMYMHSQSENFERSEE----VLKE 514

Query: 564 TEVDARRP----FCNCLIDICRNRNLNERAH 590
                 +P    +   +   CRN  + E +H
Sbjct: 515 ILAKGIKPDIISYNTVIFAYCRNGRMKEASH 545



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/387 (24%), Positives = 185/387 (47%), Gaps = 11/387 (2%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITY 225
           ++++   F  ++ +   P   I YNV +    + G  +  I  L   M +  I  D  TY
Sbjct: 49  YREAVMVFKKMEEEGCKPT-LITYNVILNVYGKMGMPWNKITGLFEGMKNAGILPDEYTY 107

Query: 226 STIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVA 285
           +T+ITC +R +L++EA   FE M   G +PD+VTY+ +LDVY KS +++E + +      
Sbjct: 108 NTLITCCRRGSLYEEAAAVFEDMKSMGFVPDKVTYNTLLDVYGKSRRIKEAIEVLREMEV 167

Query: 286 SGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGL 345
           +G  P  + ++ L   +   G  +    +  +M   G++ ++  Y  +L    + GK   
Sbjct: 168 NGCSPSIVTYNSLISAYARDGLLEEAMELKNQMVERGIKLDVFTYTAMLSGFVRTGKDES 227

Query: 346 ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405
           A  +F+EM  +G  P+  T  ALIK++G      + ++++E ++      D + +NTLL 
Sbjct: 228 AMRVFEEMRTAGCKPNICTFNALIKMHGNRGKFAEMMKVFEEIKICCCVPDIVTWNTLLA 287

Query: 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
           +    G+  E   +F++MK   +  P+  +Y  +++ Y   G+ D A+ +++ M + G+ 
Sbjct: 288 VFGQNGMDSEVSGVFKEMKRVGFV-PERDTYNTLISAYSRCGSFDQAMAMYKRMLDTGIT 346

Query: 466 INVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKV 525
            ++     ++  L +    +   ++     D   KP++ L  C  S++      +++G++
Sbjct: 347 PDLSTYNAVLAALARGGLWEQSEKILAEMQDGMCKPNE-LTHC--SLLHAYANGKEIGRM 403

Query: 526 IT-----CLQQANPKLVAFLNLIEDNS 547
           +      C     P  V    L+  NS
Sbjct: 404 LALAEEICSGVIEPHAVLLKTLVLVNS 430



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 149/309 (48%), Gaps = 2/309 (0%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L N +  +  E D   Y+++IT       + EA+  F++M + G  P  +TY+ IL+VY 
Sbjct: 20  LLNNLHKDGFEPDVYAYTSLITACVSNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYG 79

Query: 269 KSGKV-EEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
           K G    ++  L+E    +G  PD   ++ L         Y+    V ++MKS+G  P+ 
Sbjct: 80  KMGMPWNKITGLFEGMKNAGILPDEYTYNTLITCCRRGSLYEEAAAVFEDMKSMGFVPDK 139

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
           V YNTLL+  GK+ +   A  +  EM  +G +P   T  +LI  Y +    ++A+EL  +
Sbjct: 140 VTYNTLLDVYGKSRRIKEAIEVLREMEVNGCSPSIVTYNSLISAYARDGLLEEAMELKNQ 199

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           M E    +D   Y  +L+     G  E A R+FE+M+ +  CKP+  ++ A++ ++G+ G
Sbjct: 200 MVERGIKLDVFTYTAMLSGFVRTGKDESAMRVFEEMRTAG-CKPNICTFNALIKMHGNRG 258

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCG 507
                +++FEE+       +++    L+   G+     ++  VF      G  P+     
Sbjct: 259 KFAEMMKVFEEIKICCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRVGFVPERDTYN 318

Query: 508 CLLSVVSLC 516
            L+S  S C
Sbjct: 319 TLISAYSRC 327



 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 75/275 (27%), Positives = 141/275 (51%), Gaps = 11/275 (4%)

Query: 241 AIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGK 300
           A      ++K G  PD   Y++++     +G+  E + ++++    G KP  I ++V+  
Sbjct: 17  AASLLNNLHKDGFEPDVYAYTSLITACVSNGRYREAVMVFKKMEEEGCKPTLITYNVILN 76

Query: 301 MFGESG-DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
           ++G+ G  ++ I  + + MK+ G+ P+   YNTL+    +      A ++F++M   G  
Sbjct: 77  VYGKMGMPWNKITGLFEGMKNAGILPDEYTYNTLITCCRRGSLYEEAAAVFEDMKSMGFV 136

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
           PD+ T   L+ +YGK+R  K+A+E+   M  N      + YN+L++  A  GL+EEA  L
Sbjct: 137 PDKVTYNTLLDVYGKSRRIKEAIEVLREMEVNGCSPSIVTYNSLISAYARDGLLEEAMEL 196

Query: 420 FEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479
              M +    K D ++YTAML+ +   G  ++A+ +FEEM   G   N+     LI+  G
Sbjct: 197 KNQM-VERGIKLDVFTYTAMLSGFVRTGKDESAMRVFEEMRTAGCKPNICTFNALIKMHG 255

Query: 480 KARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVS 514
              +  ++++VF          + ++C C+  +V+
Sbjct: 256 NRGKFAEMMKVF---------EEIKICCCVPDIVT 281



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 81/316 (25%), Positives = 148/316 (46%), Gaps = 7/316 (2%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG---KVEEVLSLY 280
           TY+T+I+   RC  FD+A+  ++RM  TG+ PD  TY+A+L   A+ G   + E++L+  
Sbjct: 316 TYNTLISAYSRCGSFDQAMAMYKRMLDTGITPDLSTYNAVLAALARGGLWEQSEKILAEM 375

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
           + G+    KP+ +    L   +    +   +  + +E+ S  ++P+ V+  TL+    K 
Sbjct: 376 QDGMC---KPNELTHCSLLHAYANGKEIGRMLALAEEICSGVIEPHAVLLKTLVLVNSKC 432

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
                A   F E+   G +PD  TL A+I IYG+ +      E+   M+E+ +      Y
Sbjct: 433 DLLLEAERAFLELKRKGFSPDLSTLNAMIAIYGRRQMVTKTNEILNFMKESGFTPSLATY 492

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           N+L+ M +     E +E + +++ L+   KPD  SY  ++  Y   G +  A  +F EM 
Sbjct: 493 NSLMYMHSQSENFERSEEVLKEI-LAKGIKPDIISYNTVIFAYCRNGRMKEASHIFSEMR 551

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSE 520
           E G+  +V+     +         ++ + V    I  G KP+      ++         +
Sbjct: 552 ESGLIPDVITYNTFVASYAADSMFEEAIDVVCYMIKHGCKPNQNTYNSVIDGYCKLNRRD 611

Query: 521 DVGKVITCLQQANPKL 536
           D  K I+ L + +P +
Sbjct: 612 DAIKFISSLHELDPHI 627



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 116/263 (44%), Gaps = 36/263 (13%)

Query: 200 GRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVT 259
           G++   +  LA E+ S  IE   +   T++    +C+L  EA   F  + + G  PD  T
Sbjct: 397 GKEIGRMLALAEEICSGVIEPHAVLLKTLVLVNSKCDLLLEAERAFLELKRKGFSPDLST 456

Query: 260 YSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMK 319
            +A++ +Y +   V +   +      SG+ P    ++ L  M  +S +++    VL+E+ 
Sbjct: 457 LNAMIAIYGRRQMVTKTNEILNFMKESGFTPSLATYNSLMYMHSQSENFERSEEVLKEIL 516

Query: 320 SLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAK 379
           + G++P+++ YNT++ A  + G+   A  +F EM ESGL P                   
Sbjct: 517 AKGIKPDIISYNTVIFAYCRNGRMKEASHIFSEMRESGLIP------------------- 557

Query: 380 DALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAM 439
                           D I YNT +   A   + EEA  +   M +   CKP+  +Y ++
Sbjct: 558 ----------------DVITYNTFVASYAADSMFEEAIDVVCYM-IKHGCKPNQNTYNSV 600

Query: 440 LNIYGSGGNVDNAIELFEEMSEL 462
           ++ Y      D+AI+    + EL
Sbjct: 601 IDGYCKLNRRDDAIKFISSLHEL 623



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 1/143 (0%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           P   T    + I    +   K+    N++K     P     YN  M        F+  E+
Sbjct: 452 PDLSTLNAMIAIYGRRQMVTKTNEILNFMKESGFTP-SLATYNSLMYMHSQSENFERSEE 510

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           +  E+++  I+ D I+Y+T+I    R     EA   F  M ++GL+PD +TY+  +  YA
Sbjct: 511 VLKEILAKGIKPDIISYNTVIFAYCRNGRMKEASHIFSEMRESGLIPDVITYNTFVASYA 570

Query: 269 KSGKVEEVLSLYERGVASGWKPD 291
                EE + +    +  G KP+
Sbjct: 571 ADSMFEEAIDVVCYMIKHGCKPN 593



 Score = 41.2 bits (95), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 74/153 (48%), Gaps = 7/153 (4%)

Query: 141 FLRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYN-VTMKSLRF 199
           F++     P   T  + + + +  + +++S      I ++ + P + I YN V     R 
Sbjct: 479 FMKESGFTPSLATYNSLMYMHSQSENFERSEEVLKEILAKGIKP-DIISYNTVIFAYCRN 537

Query: 200 GRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVT 259
           GR  +    + +EM  + +  D ITY+T +      ++F+EAI+    M K G  P++ T
Sbjct: 538 GRMKE-ASHIFSEMRESGLIPDVITYNTFVASYAADSMFEEAIDVVCYMIKHGCKPNQNT 596

Query: 260 YSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
           Y++++D Y K  + ++ +      ++S  + DP
Sbjct: 597 YNSVIDGYCKLNRRDDAIKF----ISSLHELDP 625


>gi|302757207|ref|XP_002962027.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
 gi|300170686|gb|EFJ37287.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
          Length = 814

 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 108/437 (24%), Positives = 201/437 (45%), Gaps = 13/437 (2%)

Query: 160 ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIE 219
           +L SLK    +  FF W   Q  F  +   YN  M  L   + +     +  EM+   I 
Sbjct: 92  VLRSLKVTGTAISFFRWAGEQAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIA 151

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
            +  +++ +I    R    D+A+  FE M +    PD  T+  ++D   K+G  E+   +
Sbjct: 152 PNTFSFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEV 211

Query: 280 YERGVASGW-KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMG 338
           +   +A G+  PD    + + +   ++      R V  +M+  G  P+ + YNT+++ + 
Sbjct: 212 FHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLA 271

Query: 339 KAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFI 398
           KAG    A  + D M+     P E T   L+    KA   + A EL+  M  + +  + +
Sbjct: 272 KAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSV 331

Query: 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458
           +Y +L++  A  G ++EA  LF++M  + Y +PD  ++T M++     GN + A + FEE
Sbjct: 332 IYTSLIHGFAKSGRMKEACSLFDEMVEAGY-RPDVITHTVMIDGLCKSGNFEQAAKSFEE 390

Query: 459 MSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS----VVS 514
           M   G   NV+  T +IQ L K  R+ +  R+    I  G  PD     CLL     +  
Sbjct: 391 MMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGR 450

Query: 515 LCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARR---- 570
           L E ++ + ++  C   ++P L  + +L++    G  +++    ++ + ++  A      
Sbjct: 451 LDEAAQLLDELDKC--SSSPNLQLYSSLVKGLCDG-GSVENTLDDLFEQSKAAAENLDPG 507

Query: 571 PFCNCLIDICRNRNLNE 587
             C+ ++ +C+   L+E
Sbjct: 508 LCCSIIVGLCKTGRLDE 524



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 94/415 (22%), Positives = 192/415 (46%), Gaps = 16/415 (3%)

Query: 113 STYSYNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTRENALLILNSL---KFWQK 169
           +T+S+N  +R      R+ +D     E   R       +P     L++++ L      +K
Sbjct: 153 NTFSFNILIRSFAR-TRRADDAVTCFEIMKRKRC----KPDLHTFLILVDCLCKAGMDEK 207

Query: 170 SYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTII 229
           ++  F+ + +    P +   +   +++L   ++ +   ++  +M       D I Y+T+I
Sbjct: 208 AFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMI 267

Query: 230 TCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWK 289
               +     EA++  + M     +P EVTY  +++   K+G +E    L+    ASG++
Sbjct: 268 DGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFR 327

Query: 290 PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSL 349
           P+ + ++ L   F +SG       +  EM   G +P+++ +  +++ + K+G    A   
Sbjct: 328 PNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKS 387

Query: 350 FDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCAD 409
           F+EM+  G  P+  T T +I+   K     +A  + + M  +    D + Y  LL+    
Sbjct: 388 FEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCK 447

Query: 410 IGLVEEAERLFEDMKLSDYC--KPDNYSYTAMLNIYGSGGNVDNAI-ELFEEMSELGVAI 466
           +G ++EA +L +++   D C   P+   Y++++     GG+V+N + +LFE+       +
Sbjct: 448 LGRLDEAAQLLDEL---DKCSSSPNLQLYSSLVKGLCDGGSVENTLDDLFEQSKAAAENL 504

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSED 521
           +   C  +I  L K  R+D+  R+F   +  G KPD      L++   LC + E+
Sbjct: 505 DPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILIN--GLCRSREN 557



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 96/391 (24%), Positives = 161/391 (41%), Gaps = 43/391 (10%)

Query: 152 PTRENALLILNSL---KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           PT     +++NSL      +++   F  + +    P   I+ ++     + GR  +    
Sbjct: 293 PTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEAC-S 351

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L +EMV      D IT++ +I    +   F++A + FE M + G  P+ VTY+ I+   +
Sbjct: 352 LFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLS 411

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           K G+V     + +  +A G  PD + +  L   F + G  D    +L E+      PNL 
Sbjct: 412 KIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQ 471

Query: 329 VYNTLLEAMGKAGK--------------------PGLARSL----------------FDE 352
           +Y++L++ +   G                     PGL  S+                F  
Sbjct: 472 LYSSLVKGLCDGGSVENTLDDLFEQSKAAAENLDPGLCCSIIVGLCKTGRLDEACRIFQR 531

Query: 353 MVESGLTPDEKTLTALIKIYGKAR--WAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
           MV  G  PD  T   LI    ++R    + A  L   +    +  D + Y  L      I
Sbjct: 532 MVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEMVGYLPDAVTYTPLCIGLCKI 591

Query: 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG 470
           G V+ A ++ E+     +   D  +YTA+       G VD A+ LF+EM   G A +   
Sbjct: 592 GEVDRAVKMLEEASSRGW-NADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAA 650

Query: 471 CTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
             C+I  L K ++++D  + F   I +G KP
Sbjct: 651 YCCIINGLIKGKKLEDACKFFDEMIGKGQKP 681



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 91/402 (22%), Positives = 168/402 (41%), Gaps = 74/402 (18%)

Query: 183 FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
           FP + I YN  +  L      Q   ++ + M++       +TY  ++    +    + A 
Sbjct: 256 FPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAE 315

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
           E F  M  +G  P+ V Y++++  +AKSG+++E  SL++  V +G++PD I  +V+    
Sbjct: 316 ELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGL 375

Query: 303 GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK--------PGL--------- 345
            +SG+++      +EM   G +PN+V Y T+++ + K G+         G+         
Sbjct: 376 CKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDS 435

Query: 346 ------------------ARSLFDEMVESGLTPDEKTLTALIK----------------- 370
                             A  L DE+ +   +P+ +  ++L+K                 
Sbjct: 436 VTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVKGLCDGGSVENTLDDLFE 495

Query: 371 -----------------IYGKARWAK--DALELWERMRENKWPMDFILYNTLLN-MC-AD 409
                            I G  +  +  +A  +++RM       D   YN L+N +C + 
Sbjct: 496 QSKAAAENLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSR 555

Query: 410 IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVM 469
              VE A  L  D+++  Y  PD  +YT +       G VD A+++ EE S  G   +V+
Sbjct: 556 ENRVERAFALLHDLEMVGYL-PDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVV 614

Query: 470 GCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
             T L   L    ++D  V +F   + +G  PD     C+++
Sbjct: 615 AYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIIN 656



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 113/259 (43%), Gaps = 4/259 (1%)

Query: 208 QLANEMVSNEIELDNITYSTIIT--CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
           ++   MVS   + D  TY+ +I   C  R N  + A      +   G +PD VTY+ +  
Sbjct: 527 RIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEMVGYLPDAVTYTPLCI 586

Query: 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325
              K G+V+  + + E   + GW  D +A++ L       G  D    + QEM   G  P
Sbjct: 587 GLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAP 646

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
           +   Y  ++  + K  K   A   FDEM+  G  P   T TAL++    A    +A   +
Sbjct: 647 DAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRF 706

Query: 386 ERM-RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYG 444
           E M    +     ++Y+ L++       V+ A +LFEDM +S    P   +  ++ +   
Sbjct: 707 EGMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDM-ISRGNVPTAVTSASLFDGLV 765

Query: 445 SGGNVDNAIELFEEMSELG 463
             G  + A EL +EM+  G
Sbjct: 766 RSGKTEKAQELLQEMAAGG 784



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 76/185 (41%), Gaps = 1/185 (0%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + Y      L +  Q      L  EMV      D   Y  II    +    ++A ++F
Sbjct: 612 DVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKGKKLEDACKFF 671

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIA-FSVLGKMFGE 304
           + M   G  P   TY+A++     +G V+E    +E  +A G     +  +  L   F +
Sbjct: 672 DEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFEGMLARGELVGSVMIYDALIHGFCK 731

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
           +   D    + ++M S G  P  V   +L + + ++GK   A+ L  EM   G  P   T
Sbjct: 732 ALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHAAT 791

Query: 365 LTALI 369
            TA++
Sbjct: 792 FTAIL 796



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 73/164 (44%), Gaps = 1/164 (0%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           Y   +  L  G++ +   +  +EM+    +    TY+ ++         DEA   FE M 
Sbjct: 651 YCCIINGLIKGKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFEGML 710

Query: 250 KTG-LMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY 308
             G L+   + Y A++  + K+ KV+  L L+E  ++ G  P  +  + L      SG  
Sbjct: 711 ARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKT 770

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           +  + +LQEM + G  P+   +  +L+ + K+ + G    L  E
Sbjct: 771 EKAQELLQEMAAGGSPPHAATFTAILDGLRKSDESGKLLKLVQE 814


>gi|302784330|ref|XP_002973937.1| hypothetical protein SELMODRAFT_100758 [Selaginella moellendorffii]
 gi|300158269|gb|EFJ24892.1| hypothetical protein SELMODRAFT_100758 [Selaginella moellendorffii]
          Length = 823

 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 110/465 (23%), Positives = 200/465 (43%), Gaps = 58/465 (12%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNE-IELDNITY 225
           W+K+   F WI+  + F +  +     +  L    Q     +L   +  +E   LD   Y
Sbjct: 157 WKKALEVFEWIRKHDCFKLRGVATASILSVLGNHEQLPAALELFESLKQDESYSLDVYAY 216

Query: 226 STIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG-------------- 271
           +++I+   R   FDE I  FE M + G   + VTY+ +LD+Y K G              
Sbjct: 217 TSLISILSRARRFDEGITLFETMQREGQRGNAVTYNVMLDLYGKRGDSWDRIQSLFQEMK 276

Query: 272 ----------------------KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
                                   +E L L++    +G  P+ + ++ L  ++G+ G + 
Sbjct: 277 DLEISPDDYTYNTMITACIQNSHCQEALRLFQEMKEAGCCPNRVTYNALLDVYGKGGMHK 336

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               +L EM++ G+ PN+V YN L+ A  +AG    A +L   ++  GL PDE T   LI
Sbjct: 337 EASELLVEMEAAGISPNIVTYNELIAAYARAGLCDEAAALKKSLLSKGLCPDEFTYCTLI 396

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
             + +A   + ALE +  MR+     + + YN L+++   +  +++  ++F+ M+  + C
Sbjct: 397 SAFNRAERYEKALETFTEMRKTNCTPNIVTYNILIDIYGRMEKLDDMMKVFKFMQEKN-C 455

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
            PD  ++ ++L  +G+ G +     +F EM   G    V     LI+C G+   +D  V 
Sbjct: 456 TPDLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTFNILIECYGRCGYVDYSVD 515

Query: 490 VFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKL--VAFLNLIED-- 545
           ++   +  G++P       L++ ++     +   KV   + +A  +L       LI    
Sbjct: 516 IYKGLLRTGLQPTVPTFAALMASLAREGRWQQCEKVSQEMAEAGLQLSDACHAGLIHSYA 575

Query: 546 NSTGFENIKEEFRNVIKDTEVDARRP------------FCNCLID 578
           NS  F     + R  I + E  A++P            +C C +D
Sbjct: 576 NSGQF----FQLRKYIDELEKSAKQPLSGILCKTFVLAYCKCGMD 616



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 107/412 (25%), Positives = 189/412 (45%), Gaps = 6/412 (1%)

Query: 187 TIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
            + YNV +    + G  +  I+ L  EM   EI  D+ TY+T+IT   + +   EA+  F
Sbjct: 248 AVTYNVMLDLYGKRGDSWDRIQSLFQEMKDLEISPDDYTYNTMITACIQNSHCQEALRLF 307

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           + M + G  P+ VTY+A+LDVY K G  +E   L     A+G  P+ + ++ L   +  +
Sbjct: 308 QEMKEAGCCPNRVTYNALLDVYGKGGMHKEASELLVEMEAAGISPNIVTYNELIAAYARA 367

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G  D    + + + S G+ P+   Y TL+ A  +A +   A   F EM ++  TP+  T 
Sbjct: 368 GLCDEAAALKKSLLSKGLCPDEFTYCTLISAFNRAERYEKALETFTEMRKTNCTPNIVTY 427

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
             LI IYG+     D +++++ M+E     D + +N+LL    + G++ E   +F +MK 
Sbjct: 428 NILIDIYGRMEKLDDMMKVFKFMQEKNCTPDLVTWNSLLKSFGNCGMLTEVSNVFREMKR 487

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
           + Y  P   ++  ++  YG  G VD ++++++ +   G+   V     L+  L +  R  
Sbjct: 488 AGY-MPGVDTFNILIECYGRCGYVDYSVDIYKGLLRTGLQPTVPTFAALMASLAREGRWQ 546

Query: 486 DLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ-ANPKLVAFLN--- 541
              +V     + G++  D     L+   +       + K I  L++ A   L   L    
Sbjct: 547 QCEKVSQEMAEAGLQLSDACHAGLIHSYANSGQFFQLRKYIDELEKSAKQPLSGILCKTF 606

Query: 542 LIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELL 593
           ++     G +N  +   N + D          N +I +C  R   ERA +LL
Sbjct: 607 VLAYCKCGMDNEAQLALNQLYDNGHSPDIKVFNAMISMCAKRGWIERAVKLL 658



 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 84/346 (24%), Positives = 158/346 (45%), Gaps = 7/346 (2%)

Query: 161 LNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLA--NEMVSNEI 218
            N  + ++K+   F  ++  N  P   + YN+ +    +GR  +L + +     M     
Sbjct: 399 FNRAERYEKALETFTEMRKTNCTP-NIVTYNILIDI--YGRMEKLDDMMKVFKFMQEKNC 455

Query: 219 ELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS 278
             D +T+++++     C +  E    F  M + G MP   T++ +++ Y + G V+  + 
Sbjct: 456 TPDLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTFNILIECYGRCGYVDYSVD 515

Query: 279 LYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMG 338
           +Y+  + +G +P    F+ L       G +     V QEM   G+Q +   +  L+ +  
Sbjct: 516 IYKGLLRTGLQPTVPTFAALMASLAREGRWQQCEKVSQEMAEAGLQLSDACHAGLIHSYA 575

Query: 339 KAGKPGLARSLFDEMVESGLTPDEKTLT-ALIKIYGKARWAKDALELWERMRENKWPMDF 397
            +G+    R   DE+ +S   P    L    +  Y K     +A     ++ +N    D 
Sbjct: 576 NSGQFFQLRKYIDELEKSAKQPLSGILCKTFVLAYCKCGMDNEAQLALNQLYDNGHSPDI 635

Query: 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE 457
            ++N +++MCA  G +E A +L E+++ +   KPD  +Y  ++++YG  G    A E+  
Sbjct: 636 KVFNAMISMCAKRGWIERAVKLLEEIRKAQL-KPDGVTYNCLMSMYGREGMYYKAEEVMS 694

Query: 458 EMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
           EM   G A N++    L+    K  R+DD  RVFG  +   V+PD+
Sbjct: 695 EMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVFGDMVAARVRPDN 740



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 99/206 (48%)

Query: 200 GRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVT 259
           G+ FQL + +     S +  L  I   T +    +C + +EA     ++Y  G  PD   
Sbjct: 578 GQFFQLRKYIDELEKSAKQPLSGILCKTFVLAYCKCGMDNEAQLALNQLYDNGHSPDIKV 637

Query: 260 YSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMK 319
           ++A++ + AK G +E  + L E    +  KPD + ++ L  M+G  G Y     V+ EM+
Sbjct: 638 FNAMISMCAKRGWIERAVKLLEEIRKAQLKPDGVTYNCLMSMYGREGMYYKAEEVMSEMR 697

Query: 320 SLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAK 379
             G  PNL+ YNTLL +  K G+   A  +F +MV + + PD  T   L+  Y      K
Sbjct: 698 RAGKAPNLITYNTLLYSYTKHGRMDDAARVFGDMVAARVRPDNFTFNTLVGSYSSLGLYK 757

Query: 380 DALELWERMRENKWPMDFILYNTLLN 405
           +AL + E M E+      I +  LL+
Sbjct: 758 EALSVIEYMTEHGCQPTQITFKALLD 783



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 64/283 (22%), Positives = 120/283 (42%), Gaps = 16/283 (5%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           +   M SL    ++Q  E+++ EM    ++L +  ++ +I        F +  ++ + + 
Sbjct: 532 FAALMASLAREGRWQQCEKVSQEMAEAGLQLSDACHAGLIHSYANSGQFFQLRKYIDELE 591

Query: 250 KTGLMP-DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY 308
           K+   P   +     +  Y K G   E      +   +G  PD   F+ +  M  + G  
Sbjct: 592 KSAKQPLSGILCKTFVLAYCKCGMDNEAQLALNQLYDNGHSPDIKVFNAMISMCAKRGWI 651

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
           +    +L+E++   ++P+ V YN L+   G+ G    A  +  EM  +G  P+  T   L
Sbjct: 652 ERAVKLLEEIRKAQLKPDGVTYNCLMSMYGREGMYYKAEEVMSEMRRAGKAPNLITYNTL 711

Query: 369 IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428
           +  Y K     DA  ++  M   +   D   +NTL+   + +GL +EA  + E M     
Sbjct: 712 LYSYTKHGRMDDAARVFGDMVAARVRPDNFTFNTLVGSYSSLGLYKEALSVIEYMT-EHG 770

Query: 429 CKPDNYSYTAMLNIY------------GSGGNVDNAIELFEEM 459
           C+P   ++ A+L+ Y            G GG     IE+ +E+
Sbjct: 771 CQPTQITFKALLDGYNRNASPSRKKPGGDGGG--RPIEMIKEL 811



 Score = 46.6 bits (109), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 5/94 (5%)

Query: 178 KSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNL 237
           K+ NL    T+ Y+ T    + GR      ++  +MV+  +  DN T++T++       L
Sbjct: 701 KAPNLITYNTLLYSYT----KHGR-MDDAARVFGDMVAARVRPDNFTFNTLVGSYSSLGL 755

Query: 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG 271
           + EA+   E M + G  P ++T+ A+LD Y ++ 
Sbjct: 756 YKEALSVIEYMTEHGCQPTQITFKALLDGYNRNA 789


>gi|302762244|ref|XP_002964544.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
 gi|300168273|gb|EFJ34877.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
          Length = 528

 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 114/426 (26%), Positives = 203/426 (47%), Gaps = 23/426 (5%)

Query: 191 NVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYK 250
            V ++SL  G +     +L  EM+   +  + ITYS ++    +C   DEA+   E M +
Sbjct: 78  TVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALVETMAE 137

Query: 251 TGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDG 310
            G  P  VTY++I+  + ++ +V+E     E+ VA G  PD I ++ L   F +S D   
Sbjct: 138 RGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTALIGGFCKSRDVGR 197

Query: 311 IRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK 370
              +L E+   G  P++V Y+T+++ + KAG+   A  +F+EM      P   T  +LI 
Sbjct: 198 GLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEM---SCAPTAITYNSLIG 254

Query: 371 IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCK 430
            Y +A    +A+ L  +M ++K   D + Y TL++    +G +++A  LF+ M +++   
Sbjct: 255 GYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQM-VANKLS 313

Query: 431 PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA---RRIDDL 487
           PD  ++T++++     G +++A+EL EE++  G    +    C++    KA   R+ ++L
Sbjct: 314 PDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKANQVRKAEEL 373

Query: 488 VRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN------PKLVAFLN 541
           V  F     RG  P+      L   V+ C  +    + +  L Q N      P  VA   
Sbjct: 374 VADFR---SRGFVPNTVTYNIL---VAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYA 427

Query: 542 LIED---NSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTL 598
           +I D        ++  + +  +I+   V A   F   +  +C+     ++AHELL     
Sbjct: 428 IILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQ-PQQAHELLEEMIK 486

Query: 599 YGLYPG 604
           YG  PG
Sbjct: 487 YGHTPG 492



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 153/326 (46%), Gaps = 4/326 (1%)

Query: 176 WIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRC 235
           + +  +  P + + Y   +  L   R+ +   Q+  EMVS     DN T + ++      
Sbjct: 28  YRQMNDAHPPDFLTYTKLVHGLSKARRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLG 87

Query: 236 NLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAF 295
           +  D+A E  E M   G+  + +TYSA++D   K  +++E ++L E     G  P  + +
Sbjct: 88  DRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALVETMAERGCAPTVVTY 147

Query: 296 SVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVE 355
           + +   F  +   D     +++M + G  P+++ Y  L+    K+   G    L  E+  
Sbjct: 148 NSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTALIGGFCKSRDVGRGLELLGEVTR 207

Query: 356 SGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEE 415
            G TPD  T + +I    KA   +DA++++E M         I YN+L+      G ++E
Sbjct: 208 RGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEM---SCAPTAITYNSLIGGYCRAGDMDE 264

Query: 416 AERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLI 475
           A RL   M + D C PD  +YT +++ +   G +D+A ELF++M    ++ +V+  T L+
Sbjct: 265 AIRLLGKM-VDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLV 323

Query: 476 QCLGKARRIDDLVRVFGVSIDRGVKP 501
             L    R++D + +      RG  P
Sbjct: 324 DGLCGEGRMEDALELLEEITRRGCPP 349



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 68/300 (22%), Positives = 138/300 (46%), Gaps = 13/300 (4%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTM----KSLRFGRQFQLIEQLANEMVSNEIELDNIT 224
           +++ F   + ++   P + I Y   +    KS   GR  +L+ ++     + +I    +T
Sbjct: 162 EAHGFMEQMVAEGCHP-DIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDI----VT 216

Query: 225 YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
           YST+I    +     +A++ FE M      P  +TY++++  Y ++G ++E + L  + V
Sbjct: 217 YSTVIDGLCKAGRLRDAVDIFEEM---SCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMV 273

Query: 285 ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344
                PD + ++ L   F + G  D    + Q+M +  + P++V + +L++ +   G+  
Sbjct: 274 DDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRME 333

Query: 345 LARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
            A  L +E+   G  P   T   ++  Y KA   + A EL    R   +  + + YN L+
Sbjct: 334 DALELLEEITRRGCPPTIYTYNCVVDGYCKANQVRKAEELVADFRSRGFVPNTVTYNILV 393

Query: 405 NMCADIGLVEEAERLFEDMKLSDYCKPDNYS-YTAMLNIYGSGGNVDNAIELFEEMSELG 463
             C   G  ++A +  + +       P + + Y  +L+     G  D+A++ +EEM + G
Sbjct: 394 AGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRG 453



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 54/242 (22%), Positives = 103/242 (42%), Gaps = 39/242 (16%)

Query: 186 ETIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEW 244
           + + Y   M +  + GR     E L  +MV+N++  D +T+++++         ++A+E 
Sbjct: 280 DVVTYTTLMSAFCKMGRLDDAYE-LFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALEL 338

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
            E + + G  P   TY+ ++D Y K+ +V +   L     + G+ P+ + +++L      
Sbjct: 339 LEEITRRGCPPTIYTYNCVVDGYCKANQVRKAEELVADFRSRGFVPNTVTYNILVAGCCR 398

Query: 305 SGDYD-GIRYVLQ------------------------------------EMKSLGVQPNL 327
           +G  D  ++Y+ Q                                    EM   G  P  
Sbjct: 399 AGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAA 458

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
             + T++ A+ KA +P  A  L +EM++ G TP   T  A++  Y +A   + A EL   
Sbjct: 459 ATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSAYCRAGMIQKADELASE 518

Query: 388 MR 389
           +R
Sbjct: 519 LR 520


>gi|224056220|ref|XP_002298762.1| predicted protein [Populus trichocarpa]
 gi|222846020|gb|EEE83567.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 102/418 (24%), Positives = 188/418 (44%), Gaps = 6/418 (1%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           F  +KS    P + + YN  +      R+ +   ++  EM  N      +TY+++I+   
Sbjct: 127 FKDMKSMGFVP-DKVTYNALLDVYGKSRRTKEAMEVLREMEVNGCSPSIVTYNSLISAYA 185

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
           R  L  EA+E   +M + G+  D  TY+ +L  + ++GK E  + ++    A+G KP+  
Sbjct: 186 RDGLLKEAMELKNQMVEGGINLDVFTYTTLLSGFVRAGKDESAMRVFAEMRAAGCKPNIC 245

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
            F+ L KM G  G +  +  V +E+K+    P++V +NTLL   G+ G       +F EM
Sbjct: 246 TFNALIKMHGNRGKFAEMMKVFEEIKNSCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEM 305

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
             +G  P+  T   LI  Y +      A+++++RM E     D   YN +L   A  GL 
Sbjct: 306 KRAGFVPERDTYNTLISAYSRCGSFDQAMDIYKRMLEAGITPDLSTYNAVLAALARGGLW 365

Query: 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTC 473
           E++E++F +MK    CKP+  +Y ++L+ Y +G  +   + L EE+    +  + +    
Sbjct: 366 EQSEKIFAEMK-DGRCKPNELTYCSLLHAYANGKEIGRMLALAEEICSGVIEPHAVLLKT 424

Query: 474 LIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN 533
           L+    K   + +    F     +G  PD      +LS+    +      +++  + ++ 
Sbjct: 425 LVLVNSKCDLLVEAEVAFLELKRKGFSPDLSTLNAMLSIYGRRQMFTKTNEILNFMNESG 484

Query: 534 --PKLVAF--LNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNE 587
             P L  +  L  +   S  FE  +E  + ++          +   +   CRN  + E
Sbjct: 485 FTPSLATYNSLMYMHSRSENFERSEEVLKEILAKGIKPDTISYNTVIFAYCRNGRMKE 542



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/387 (25%), Positives = 188/387 (48%), Gaps = 11/387 (2%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITY 225
           ++++   F  ++ +   P   I YNV +    + G  +  I+ L   M +  +  D  TY
Sbjct: 49  YREAVMVFKKMEEEGCKPT-LITYNVILNVYGKMGMPWNKIKGLFEGMKNAGVLPDEYTY 107

Query: 226 STIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVA 285
           +T+ITC +R +L +EA   F+ M   G +PD+VTY+A+LDVY KS + +E + +      
Sbjct: 108 NTLITCCRRGSLHEEAAAVFKDMKSMGFVPDKVTYNALLDVYGKSRRTKEAMEVLREMEV 167

Query: 286 SGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGL 345
           +G  P  + ++ L   +   G       +  +M   G+  ++  Y TLL    +AGK   
Sbjct: 168 NGCSPSIVTYNSLISAYARDGLLKEAMELKNQMVEGGINLDVFTYTTLLSGFVRAGKDES 227

Query: 346 ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405
           A  +F EM  +G  P+  T  ALIK++G      + ++++E ++ +    D + +NTLL 
Sbjct: 228 AMRVFAEMRAAGCKPNICTFNALIKMHGNRGKFAEMMKVFEEIKNSCCVPDIVTWNTLLA 287

Query: 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
           +    G+  E   +F++MK + +  P+  +Y  +++ Y   G+ D A+++++ M E G+ 
Sbjct: 288 VFGQNGMDSEVSGVFKEMKRAGFV-PERDTYNTLISAYSRCGSFDQAMDIYKRMLEAGIT 346

Query: 466 INVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKV 525
            ++     ++  L +    +   ++F    D   KP++ L  C  S++      +++G++
Sbjct: 347 PDLSTYNAVLAALARGGLWEQSEKIFAEMKDGRCKPNE-LTYC--SLLHAYANGKEIGRM 403

Query: 526 IT-----CLQQANPKLVAFLNLIEDNS 547
           +      C     P  V    L+  NS
Sbjct: 404 LALAEEICSGVIEPHAVLLKTLVLVNS 430



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 149/310 (48%), Gaps = 2/310 (0%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
            L N++  +   LD   Y+++IT       + EA+  F++M + G  P  +TY+ IL+VY
Sbjct: 19  SLLNDLHKDGFGLDVYAYTSLITACVSNGRYREAVMVFKKMEEEGCKPTLITYNVILNVY 78

Query: 268 AKSGKV-EEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
            K G    ++  L+E    +G  PD   ++ L         ++    V ++MKS+G  P+
Sbjct: 79  GKMGMPWNKIKGLFEGMKNAGVLPDEYTYNTLITCCRRGSLHEEAAAVFKDMKSMGFVPD 138

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
            V YN LL+  GK+ +   A  +  EM  +G +P   T  +LI  Y +    K+A+EL  
Sbjct: 139 KVTYNALLDVYGKSRRTKEAMEVLREMEVNGCSPSIVTYNSLISAYARDGLLKEAMELKN 198

Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
           +M E    +D   Y TLL+     G  E A R+F +M+ +  CKP+  ++ A++ ++G+ 
Sbjct: 199 QMVEGGINLDVFTYTTLLSGFVRAGKDESAMRVFAEMRAAG-CKPNICTFNALIKMHGNR 257

Query: 447 GNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLC 506
           G     +++FEE+       +++    L+   G+     ++  VF      G  P+    
Sbjct: 258 GKFAEMMKVFEEIKNSCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTY 317

Query: 507 GCLLSVVSLC 516
             L+S  S C
Sbjct: 318 NTLISAYSRC 327



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 143/313 (45%), Gaps = 1/313 (0%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           TY+T+I+   RC  FD+A++ ++RM + G+ PD  TY+A+L   A+ G  E+   ++   
Sbjct: 316 TYNTLISAYSRCGSFDQAMDIYKRMLEAGITPDLSTYNAVLAALARGGLWEQSEKIFAEM 375

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
                KP+ + +  L   +    +   +  + +E+ S  ++P+ V+  TL+    K    
Sbjct: 376 KDGRCKPNELTYCSLLHAYANGKEIGRMLALAEEICSGVIEPHAVLLKTLVLVNSKCDLL 435

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
             A   F E+   G +PD  TL A++ IYG+ +      E+   M E+ +      YN+L
Sbjct: 436 VEAEVAFLELKRKGFSPDLSTLNAMLSIYGRRQMFTKTNEILNFMNESGFTPSLATYNSL 495

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           + M +     E +E + +++ L+   KPD  SY  ++  Y   G +  A  +F EM E G
Sbjct: 496 MYMHSRSENFERSEEVLKEI-LAKGIKPDTISYNTVIFAYCRNGRMKEASRIFSEMRESG 554

Query: 464 VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVG 523
           +  +V+     +         +D + V    I  G KP+      ++         +D  
Sbjct: 555 LVPDVITYNTFVASYAADSMFEDAIDVVRYMIKHGCKPNQNTYNSVVDGYCKHNHRDDAI 614

Query: 524 KVITCLQQANPKL 536
             I+ L + +P +
Sbjct: 615 MFISSLHELDPHI 627



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 117/243 (48%), Gaps = 2/243 (0%)

Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
           + I+ +  K GKV    SL       G+  D  A++ L      +G Y     V ++M+ 
Sbjct: 2   AVIISMLGKEGKVSVAASLLNDLHKDGFGLDVYAYTSLITACVSNGRYREAVMVFKKMEE 61

Query: 321 LGVQPNLVVYNTLLEAMGKAGKP-GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAK 379
            G +P L+ YN +L   GK G P    + LF+ M  +G+ PDE T   LI    +    +
Sbjct: 62  EGCKPTLITYNVILNVYGKMGMPWNKIKGLFEGMKNAGVLPDEYTYNTLITCCRRGSLHE 121

Query: 380 DALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAM 439
           +A  +++ M+   +  D + YN LL++       +EA  +  +M+++  C P   +Y ++
Sbjct: 122 EAAAVFKDMKSMGFVPDKVTYNALLDVYGKSRRTKEAMEVLREMEVNG-CSPSIVTYNSL 180

Query: 440 LNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGV 499
           ++ Y   G +  A+EL  +M E G+ ++V   T L+    +A + +  +RVF      G 
Sbjct: 181 ISAYARDGLLKEAMELKNQMVEGGINLDVFTYTTLLSGFVRAGKDESAMRVFAEMRAAGC 240

Query: 500 KPD 502
           KP+
Sbjct: 241 KPN 243



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 131/317 (41%), Gaps = 43/317 (13%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           P   T    L  L     W++S   F  +K     P E + Y   + +   G++   +  
Sbjct: 347 PDLSTYNAVLAALARGGLWEQSEKIFAEMKDGRCKPNE-LTYCSLLHAYANGKEIGRMLA 405

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           LA E+ S  IE   +   T++    +C+L  EA   F  + + G  PD  T +A+L +Y 
Sbjct: 406 LAEEICSGVIEPHAVLLKTLVLVNSKCDLLVEAEVAFLELKRKGFSPDLSTLNAMLSIYG 465

Query: 269 KS---GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325
           +     K  E+L+       SG+ P    ++ L  M   S +++    VL+E+ + G++P
Sbjct: 466 RRQMFTKTNEILNFMNE---SGFTPSLATYNSLMYMHSRSENFERSEEVLKEILAKGIKP 522

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
           + + YNT++ A  + G+   A  +F EM ESGL PD  T    +  Y      +DA+++ 
Sbjct: 523 DTISYNTVIFAYCRNGRMKEASRIFSEMRESGLVPDVITYNTFVASYAADSMFEDAIDVV 582

Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445
             M                                    +   CKP+  +Y ++++ Y  
Sbjct: 583 RYM------------------------------------IKHGCKPNQNTYNSVVDGYCK 606

Query: 446 GGNVDNAIELFEEMSEL 462
             + D+AI     + EL
Sbjct: 607 HNHRDDAIMFISSLHEL 623


>gi|357487221|ref|XP_003613898.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355515233|gb|AES96856.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 807

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 115/439 (26%), Positives = 197/439 (44%), Gaps = 59/439 (13%)

Query: 56  NPETKTLSLSEQLKPLSSTTLSPTK-NDRTPLLSKPKSTWVNPTKPRRSVLSLQR----- 109
           N E  TLSL   + P   T   P+K + + PLL  P     N  + R   L+L +     
Sbjct: 4   NLEINTLSL---VAPPRETISIPSKTSQQQPLLDYP-----NDPEARFKNLNLHKNANKR 55

Query: 110 --------QKRSTYS--------YNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQPT 153
                   +K++ ++        YN RV  +      ++D D       +A+     +  
Sbjct: 56  VNSNGFVLKKKNVHTKCSTKCVNYNGRVLAILQALDTIHDLD-------KALGPWEKRLG 108

Query: 154 RENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEM 213
           ++   +IL     W+++   F W K +  + +  I YN+    L   R+++ +E L NEM
Sbjct: 109 KKEMSIILKGQVCWERALMIFEWFKQKGCYELNVIHYNIMFWILGKERKWRFLESLWNEM 168

Query: 214 VSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS--- 270
            +N +   N TY T+I    +    +EA+ W +RM   G+ PDEVT   ++ +Y ++   
Sbjct: 169 NANGVLPVNSTYGTLIDVYSKSGFKEEALGWLQRMLSQGMEPDEVTMGVVVQLYKRAREF 228

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD--GIRYVLQEMKSLGVQPNLV 328
            K EE    + RG       +P+  ++         D++   +R+V  E+  + V  N  
Sbjct: 229 QKAEEFFRKWSRG-------EPLVIAI---------DHNTVDVRHVCNEVSHVNVCLNSH 272

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            YNTL++  GKAG+      +F +M++ G+ P   T   +I +YG     ++   L +RM
Sbjct: 273 TYNTLIDIYGKAGQIQAVYEIFAKMIKQGVAPTTVTFNTMIHLYGNHGRIREVSLLLQRM 332

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
            E + P D   YN L+++      ++ A +    MK   + +PD  SY  +L  Y +   
Sbjct: 333 EELRCPPDTRTYNILISVLVKHNNIKLAAKYLMKMK-EAFLEPDLVSYRTLLYAYSTRKM 391

Query: 449 VDNAIELFEEMSELGVAIN 467
           V  A EL  EM E G+ I+
Sbjct: 392 VQEAEELVREMDERGLKID 410



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 129/284 (45%), Gaps = 2/284 (0%)

Query: 185 METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEW 244
           +  + +NV +K+   G+ +    QL + M    I  +  +YS++I      +    A  +
Sbjct: 477 LSVLVFNVMIKAYGIGKCYDKACQLFDSMEKFGIVANECSYSSLIHILASADKPHIAKPY 536

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
             +M + GL+ D + Y A++  + K  +++    LY   +    KPD I +SVL   F +
Sbjct: 537 LNKMQEAGLVSDCILYCAVISSFVKLSQLDMAEELYIEMIGHTVKPDAIIYSVLINAFAD 596

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
            G+       L  M++ G   N  +YN+L++   K G    A+  +  +      P   +
Sbjct: 597 VGNVIKATGYLDRMRNAGFVGNQAIYNSLMKLYTKIGYLKEAQQTYTLLQSLDQAPSVFS 656

Query: 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
              +I +Y +    + A E++E +++N    +F  Y  +L M   IG ++EA ++ + M+
Sbjct: 657 SNCMIDLYTERLMVEQAKEIFESLKKNNIANEFS-YAMMLCMYKKIGRLDEAFQIAKQMR 715

Query: 425 LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINV 468
                  D  SY  +L +Y     +  A E F+EM E G+   V
Sbjct: 716 KQGLL-TDLLSYNNVLGLYSMDRRLREAKETFKEMIESGIHYGV 758



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/281 (20%), Positives = 131/281 (46%), Gaps = 2/281 (0%)

Query: 219 ELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS 278
           +L  + ++ +I        +D+A + F+ M K G++ +E +YS+++ + A + K      
Sbjct: 476 KLSVLVFNVMIKAYGIGKCYDKACQLFDSMEKFGIVANECSYSSLIHILASADKPHIAKP 535

Query: 279 LYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMG 338
              +   +G   D I +  +   F +    D    +  EM    V+P+ ++Y+ L+ A  
Sbjct: 536 YLNKMQEAGLVSDCILYCAVISSFVKLSQLDMAEELYIEMIGHTVKPDAIIYSVLINAFA 595

Query: 339 KAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFI 398
             G    A    D M  +G   ++    +L+K+Y K  + K+A + +  ++         
Sbjct: 596 DVGNVIKATGYLDRMRNAGFVGNQAIYNSLMKLYTKIGYLKEAQQTYTLLQSLDQAPSVF 655

Query: 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458
             N ++++  +  +VE+A+ +FE +K ++    + +SY  ML +Y   G +D A ++ ++
Sbjct: 656 SSNCMIDLYTERLMVEQAKEIFESLKKNNI--ANEFSYAMMLCMYKKIGRLDEAFQIAKQ 713

Query: 459 MSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGV 499
           M + G+  +++    ++      RR+ +    F   I+ G+
Sbjct: 714 MRKQGLLTDLLSYNNVLGLYSMDRRLREAKETFKEMIESGI 754



 Score = 53.1 bits (126), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 74/176 (42%), Gaps = 12/176 (6%)

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
           N++ YN +   +GK  K     SL++EM  +G+ P   T   LI +Y K+ + ++AL   
Sbjct: 141 NVIHYNIMFWILGKERKWRFLESLWNEMNANGVLPVNSTYGTLIDVYSKSGFKEEALGWL 200

Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445
           +RM       D +    ++ +       ++AE  F             +S    L I   
Sbjct: 201 QRMLSQGMEPDEVTMGVVVQLYKRAREFQKAEEFFR-----------KWSRGEPLVIAID 249

Query: 446 GGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
              VD    +  E+S + V +N      LI   GKA +I  +  +F   I +GV P
Sbjct: 250 HNTVD-VRHVCNEVSHVNVCLNSHTYNTLIDIYGKAGQIQAVYEIFAKMIKQGVAP 304


>gi|224064580|ref|XP_002301519.1| predicted protein [Populus trichocarpa]
 gi|222843245|gb|EEE80792.1| predicted protein [Populus trichocarpa]
          Length = 718

 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 121/550 (22%), Positives = 251/550 (45%), Gaps = 53/550 (9%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + I +N  +     G  ++    L+ EMV+  I+ D  TY+T++    +    D A E  
Sbjct: 182 DRITFNSLLAVCSKGGLWEAARSLSCEMVNRGIDQDIFTYNTLLDAVCKGGQLDMAFEIM 241

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
             M    ++P+ VTYS ++D YAK+G++++  +L+      G   D ++++ L  ++ + 
Sbjct: 242 SEMPAKNILPNVVTYSTMIDGYAKAGRLDDARNLFNEMKFLGISLDRVSYNTLLSIYAKL 301

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G ++    V +EM++ G++ ++V YN LL   GK  K  + R +F+EM    ++P+  T 
Sbjct: 302 GRFEEAMDVCREMENSGIRKDVVTYNALLGGYGKQYKYDVVRKVFEEMKARHVSPNLLTY 361

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
           + LI +Y K    ++A++++   ++     D +LY+ L++     GLVE A  L ++M  
Sbjct: 362 STLIDVYSKGGLYREAMDVFREFKKAGLKADVVLYSALIDALCKNGLVESAVSLLDEMT- 420

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV-AINVMGCTCLIQCLGKARRI 484
            +  +P+  +Y ++++ +G     ++ ++   + SEL + +++        + L   R  
Sbjct: 421 KEGIRPNVVTYNSIIDAFGRPATTESVVDDAGQTSELQIDSLSSSAVEKATKSLVADRED 480

Query: 485 DDLVRVFG-VSIDRG-------------------------VKPDDRLCGCLLSVVSLCET 518
           + ++++FG ++ ++                          +KP+      +L+  S C +
Sbjct: 481 NRIIKIFGQLAAEKAGQAKNSGGQEMMCILGVFHKMHELEIKPNVVTFSAILNACSRCNS 540

Query: 519 SEDVGKVITCLQQANPKLVAFLNLIEDNSTGF-----ENIKEEFRNV---IKDTEVDARR 570
            E+   ++        +L  F N +   + G      EN+ E+ +++   +K  +     
Sbjct: 541 FEEASMLL-------EELRLFDNQVYGVAHGLLMGYRENVWEQAQSLFDEVKLMDSSTAS 593

Query: 571 PFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALE 630
            F N L D+  +    +R  +L+    L G    +      E  LD+  +S GAA+  + 
Sbjct: 594 AFYNALTDMLWHFG-QKRGAQLV---VLEGKRRQVWENVWSESCLDLHLMSSGAARAMVH 649

Query: 631 EWMWTLAKIVLREEVLPQLFLAETGTGTHKFSQGLATAFASHVNKLAAPFRQSEGKAGCF 690
            W+  +  IV     +P+L     G  T      L  A  + +  + APFR ++   G  
Sbjct: 650 AWLLNVRAIVFEGHEVPKLLSKVVGDST------LRRAVEALLMGMGAPFRSAKCNLGRL 703

Query: 691 VATREDLVSW 700
           ++T   + SW
Sbjct: 704 ISTGSVVASW 713



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 95/305 (31%), Positives = 154/305 (50%), Gaps = 12/305 (3%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG-KVEEVLSLYER 282
            +S II+   R    +EAI+ F  M   GL P+ VTY+A++D   K G + + VL +++ 
Sbjct: 114 AFSAIISAYGRSGYCNEAIKIFYSMKDYGLKPNLVTYNAVIDACGKGGVEFKRVLEIFDE 173

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
            + +G +PD I F+ L  +  + G ++  R +  EM + G+  ++  YNTLL+A+ K G+
Sbjct: 174 MLRNGMQPDRITFNSLLAVCSKGGLWEAARSLSCEMVNRGIDQDIFTYNTLLDAVCKGGQ 233

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
             +A  +  EM    + P+  T + +I  Y KA    DA  L+  M+     +D + YNT
Sbjct: 234 LDMAFEIMSEMPAKNILPNVVTYSTMIDGYAKAGRLDDARNLFNEMKFLGISLDRVSYNT 293

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
           LL++ A +G  EEA  +  +M+ S   + D  +Y A+L  YG     D   ++FEEM   
Sbjct: 294 LLSIYAKLGRFEEAMDVCREMENSG-IRKDVVTYNALLGGYGKQYKYDVVRKVFEEMKAR 352

Query: 463 GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD--------DRLC--GCLLSV 512
            V+ N++  + LI    K     + + VF      G+K D        D LC  G + S 
Sbjct: 353 HVSPNLLTYSTLIDVYSKGGLYREAMDVFREFKKAGLKADVVLYSALIDALCKNGLVESA 412

Query: 513 VSLCE 517
           VSL +
Sbjct: 413 VSLLD 417



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 156/317 (49%), Gaps = 3/317 (0%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITC 231
            F  +K   L P   + YN  + +  + G +F+ + ++ +EM+ N ++ D IT+++++  
Sbjct: 134 IFYSMKDYGLKP-NLVTYNAVIDACGKGGVEFKRVLEIFDEMLRNGMQPDRITFNSLLAV 192

Query: 232 AKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291
             +  L++ A      M   G+  D  TY+ +LD   K G+++    +     A    P+
Sbjct: 193 CSKGGLWEAARSLSCEMVNRGIDQDIFTYNTLLDAVCKGGQLDMAFEIMSEMPAKNILPN 252

Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
            + +S +   + ++G  D  R +  EMK LG+  + V YNTLL    K G+   A  +  
Sbjct: 253 VVTYSTMIDGYAKAGRLDDARNLFNEMKFLGISLDRVSYNTLLSIYAKLGRFEEAMDVCR 312

Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411
           EM  SG+  D  T  AL+  YGK        +++E M+      + + Y+TL+++ +  G
Sbjct: 313 EMENSGIRKDVVTYNALLGGYGKQYKYDVVRKVFEEMKARHVSPNLLTYSTLIDVYSKGG 372

Query: 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC 471
           L  EA  +F + K +   K D   Y+A+++     G V++A+ L +EM++ G+  NV+  
Sbjct: 373 LYREAMDVFREFKKAGL-KADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTY 431

Query: 472 TCLIQCLGKARRIDDLV 488
             +I   G+    + +V
Sbjct: 432 NSIIDAFGRPATTESVV 448



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 104/379 (27%), Positives = 174/379 (45%), Gaps = 15/379 (3%)

Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
           SA++    + GKVE   ++++  +  G+     AFS +   +G SG  +    +   MK 
Sbjct: 81  SAMISTLGRLGKVEMAKTVFKAALTEGYGNTVYAFSAIISAYGRSGYCNEAIKIFYSMKD 140

Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSL--FDEMVESGLTPDEKTLTALIKIYGKARWA 378
            G++PNLV YN +++A GK G     R L  FDEM+ +G+ PD  T  +L+ +  K    
Sbjct: 141 YGLKPNLVTYNAVIDACGKGGVE-FKRVLEIFDEMLRNGMQPDRITFNSLLAVCSKGGLW 199

Query: 379 KDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTA 438
           + A  L   M       D   YNTLL+     G ++ A  +  +M   +   P+  +Y+ 
Sbjct: 200 EAARSLSCEMVNRGIDQDIFTYNTLLDAVCKGGQLDMAFEIMSEMPAKNIL-PNVVTYST 258

Query: 439 MLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRG 498
           M++ Y   G +D+A  LF EM  LG++++ +    L+    K  R ++ + V     + G
Sbjct: 259 MIDGYAKAGRLDDARNLFNEMKFLGISLDRVSYNTLLSIYAKLGRFEEAMDVCREMENSG 318

Query: 499 VKPDDRLCGCLLSVVSLCETSEDVGKVITCLQ--QANPKLVAFLNLIEDNSTG--FENIK 554
           ++ D      LL         + V KV   ++    +P L+ +  LI+  S G  +    
Sbjct: 319 IRKDVVTYNALLGGYGKQYKYDVVRKVFEEMKARHVSPNLLTYSTLIDVYSKGGLYREAM 378

Query: 555 EEFRNVIKDTEVDARRPFCNCLID-ICRNRNLNERAHELLYLGTLYGLYPGL--HNKTLD 611
           + FR   K   + A     + LID +C+N  L E A  LL   T  G+ P +  +N  +D
Sbjct: 379 DVFRE-FKKAGLKADVVLYSALIDALCKN-GLVESAVSLLDEMTKEGIRPNVVTYNSIID 436

Query: 612 EWSLDVRSLSV--GAAQTA 628
            +     + SV   A QT+
Sbjct: 437 AFGRPATTESVVDDAGQTS 455


>gi|168030898|ref|XP_001767959.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162680801|gb|EDQ67234.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 957

 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 85/377 (22%), Positives = 186/377 (49%), Gaps = 2/377 (0%)

Query: 159 LILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEI 218
           ++L   + W+++  FF W+K Q  +    I Y   +       +  L E+  +EM+   +
Sbjct: 79  IVLKEQRGWRQAREFFEWMKLQIPYSPSVIAYTTLLGIYGQAGKLTLAEETLSEMLDAGV 138

Query: 219 ELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS 278
           E D +    ++    R   +D  +E++E M + GL+P    Y  ++    K+ +  + L 
Sbjct: 139 EPDEVAGGCMLEAYARWERYDTLLEFYEAMRQRGLVPSAHVYRTMIVTLYKAERHSDALM 198

Query: 279 LYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMG 338
           L+E  +    +P+ + ++++  +  + G  +   +  ++M++ G  P+ ++YNT++ A+G
Sbjct: 199 LWEDLLVEKLEPNFVLYAIIIHILNKEGRTEDAVHTFKDMRAAGHLPDELLYNTIICALG 258

Query: 339 KAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFI 398
           K G+   + +L+ +M + G+ P + T T +I ++ KA     A E    M+ +    D +
Sbjct: 259 KLGRYQESEALYLDMKKQGIVPSKFTYTIMINVWSKAGRFASAAETLAEMQRSGCIADEV 318

Query: 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458
           +Y +++NM    GL EEAE++F++M        +  SYT+M  +    G    A++LF+ 
Sbjct: 319 VYCSIINMYGKAGLYEEAEKIFKEMDTLGLLSHEK-SYTSMAKVRAEAGRHAEALKLFDV 377

Query: 459 MSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCET 518
           M+E G+    M    L+ C  +   ++   +V+   ++ G   +    G ++++ S  + 
Sbjct: 378 MAEKGLLTTRMTWNTLLHCFVRIGDVEQATKVYNDMVEAG-SANVVTYGNMINLYSKFQM 436

Query: 519 SEDVGKVITCLQQANPK 535
            ED   ++  ++++  K
Sbjct: 437 VEDAENLLAEMRESGVK 453



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 84/295 (28%), Positives = 139/295 (47%), Gaps = 3/295 (1%)

Query: 199 FGRQ--FQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPD 256
           +GR+  FQ  + L N +   +       Y+T+I     C   +EAI  F+RM + G M D
Sbjct: 554 YGRRGLFQKAKSLFNSLQKKDHPPSLYVYNTMIKLCAVCKELEEAIFVFDRMEENGRMFD 613

Query: 257 EVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQ 316
            VT S ++  Y K G+ ++   L +R    G   D +A++   K   +SG+  G   V  
Sbjct: 614 AVTVSILVHAYTKEGRFKDAAGLMKRAKKVGVAMDTVAYNTSLKANLKSGNLKGALEVYG 673

Query: 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
           EM+   ++P+   Y  L+    K G  G A   F+ +  S +  DE   + +I  YG A 
Sbjct: 674 EMQEADIEPSAKTYTILISLFSKLGDLGRAVQAFEVLNSSEVGADEIAYSQMIHCYGCAG 733

Query: 377 WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY 436
             K+A +L++ M    +  + ++YN LL+  A  GL  EA  L  DM+    C P + +Y
Sbjct: 734 RPKEAADLFQEMETKGFKPNEVIYNNLLDAFARAGLFAEARLLLSDMRRKG-CPPSSVTY 792

Query: 437 TAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
             +++ YGS G   +A  L   M + G+  +      +I+  G   ++ D  R+F
Sbjct: 793 LLLMSAYGSKGKPADAESLLHLMQDRGLYPDCRHYNEVIRAYGNVGKLSDACRIF 847



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 129/261 (49%), Gaps = 11/261 (4%)

Query: 185 METIFYNVTMKS-LRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           M+T+ YN ++K+ L+ G     +E +  EM   +IE    TY+ +I+   +      A++
Sbjct: 647 MDTVAYNTSLKANLKSGNLKGALE-VYGEMQEADIEPSAKTYTILISLFSKLGDLGRAVQ 705

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
            FE +  + +  DE+ YS ++  Y  +G+ +E   L++     G+KP+ + ++ L   F 
Sbjct: 706 AFEVLNSSEVGADEIAYSQMIHCYGCAGRPKEAADLFQEMETKGFKPNEVIYNNLLDAFA 765

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
            +G +   R +L +M+  G  P+ V Y  L+ A G  GKP  A SL   M + GL PD +
Sbjct: 766 RAGLFAEARLLLSDMRRKGCPPSSVTYLLLMSAYGSKGKPADAESLLHLMQDRGLYPDCR 825

Query: 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
               +I+ YG      DA  ++  ++     ++   + TL+ +  D G  E+  ++++D+
Sbjct: 826 HYNEVIRAYGNVGKLSDACRIFYELKTVGIGLELGCFRTLVKIHLDHGQFEQGWQIYKDL 885

Query: 424 KLSDYCKPDNYSYTAMLNIYG 444
                    + S+T   N+YG
Sbjct: 886 ---------SQSFTVDQNLYG 897



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/306 (23%), Positives = 132/306 (43%), Gaps = 3/306 (0%)

Query: 166 FWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITY 225
            +QK+   FN ++ ++  P     YN  +K     ++ +    + + M  N    D +T 
Sbjct: 559 LFQKAKSLFNSLQKKD-HPPSLYVYNTMIKLCAVCKELEEAIFVFDRMEENGRMFDAVTV 617

Query: 226 STIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVA 285
           S ++    +   F +A    +R  K G+  D V Y+  L    KSG ++  L +Y     
Sbjct: 618 SILVHAYTKEGRFKDAAGLMKRAKKVGVAMDTVAYNTSLKANLKSGNLKGALEVYGEMQE 677

Query: 286 SGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGL 345
           +  +P    +++L  +F + GD        + + S  V  + + Y+ ++   G AG+P  
Sbjct: 678 ADIEPSAKTYTILISLFSKLGDLGRAVQAFEVLNSSEVGADEIAYSQMIHCYGCAGRPKE 737

Query: 346 ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405
           A  LF EM   G  P+E     L+  + +A    +A  L   MR    P   + Y  L++
Sbjct: 738 AADLFQEMETKGFKPNEVIYNNLLDAFARAGLFAEARLLLSDMRRKGCPPSSVTYLLLMS 797

Query: 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
                G   +AE L   M+      PD   Y  ++  YG+ G + +A  +F E+  +G+ 
Sbjct: 798 AYGSKGKPADAESLLHLMQ-DRGLYPDCRHYNEVIRAYGNVGKLSDACRIFYELKTVGIG 856

Query: 466 INVMGC 471
           +  +GC
Sbjct: 857 LE-LGC 861



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/274 (24%), Positives = 127/274 (46%), Gaps = 13/274 (4%)

Query: 218 IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL 277
           + +D + Y+T +    +      A+E +  M +  + P   TY+ ++ +++K G +   +
Sbjct: 645 VAMDTVAYNTSLKANLKSGNLKGALEVYGEMQEADIEPSAKTYTILISLFSKLGDLGRAV 704

Query: 278 SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
             +E   +S    D IA+S +   +G +G       + QEM++ G +PN V+YN LL+A 
Sbjct: 705 QAFEVLNSSEVGADEIAYSQMIHCYGCAGRPKEAADLFQEMETKGFKPNEVIYNNLLDAF 764

Query: 338 GKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDF 397
            +AG    AR L  +M   G  P   T   L+  YG      DA  L   M++     D 
Sbjct: 765 ARAGLFAEARLLLSDMRRKGCPPSSVTYLLLMSAYGSKGKPADAESLLHLMQDRGLYPDC 824

Query: 398 ILYNTLLNMCADIGLVEEAERLFEDMK-----LSDYCKPDNYSYTAMLNIYGSGGNVDNA 452
             YN ++    ++G + +A R+F ++K     L   C      +  ++ I+   G  +  
Sbjct: 825 RHYNEVIRAYGNVGKLSDACRIFYELKTVGIGLELGC------FRTLVKIHLDHGQFEQG 878

Query: 453 IELFEEMSE-LGVAINVMGCTCLIQCLGKARRID 485
            ++++++S+   V  N+ G    + C+G  RR +
Sbjct: 879 WQIYKDLSQSFTVDQNLYGIAVEL-CIGAGRRTE 911



 Score = 89.0 bits (219), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 82/391 (20%), Positives = 173/391 (44%), Gaps = 24/391 (6%)

Query: 166 FWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITY 225
            ++++   F  + +  L   E  + ++       GR  + + +L + M    +    +T+
Sbjct: 332 LYEEAEKIFKEMDTLGLLSHEKSYTSMAKVRAEAGRHAEAL-KLFDVMAEKGLLTTRMTW 390

Query: 226 STIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVA 285
           +T++ C  R    ++A + +  M + G   + VTY  ++++Y+K   VE+  +L      
Sbjct: 391 NTLLHCFVRIGDVEQATKVYNDMVEAG-SANVVTYGNMINLYSKFQMVEDAENLLAEMRE 449

Query: 286 SGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP------------------NL 327
           SG KPD   +    K++  S   D    V+QEMK  G++                   + 
Sbjct: 450 SGVKPDEYIYGSFVKLYCNSDMIDKATMVVQEMKDDGLESVCNEREMFPLGQALQSPIDT 509

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
            + N LL    +AG+   A  L D++VE+G    +     +I +YG+    + A  L+  
Sbjct: 510 QILNQLLIKRAEAGELREAELLLDKLVEAGGCIVDTAAVLMINLYGRRGLFQKAKSLFNS 569

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           +++   P    +YNT++ +CA    +EEA  +F+ M+ +     D  + + +++ Y   G
Sbjct: 570 LQKKDHPPSLYVYNTMIKLCAVCKELEEAIFVFDRMEENGRMF-DAVTVSILVHAYTKEG 628

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCG 507
              +A  L +   ++GVA++ +     ++   K+  +   + V+G   +  ++P  +   
Sbjct: 629 RFKDAAGLMKRAKKVGVAMDTVAYNTSLKANLKSGNLKGALEVYGEMQEADIEPSAKTYT 688

Query: 508 CLLSVVSLCETSEDVGKVITCLQQANPKLVA 538
            L+S+ S      D+G+ +   +  N   V 
Sbjct: 689 ILISLFS---KLGDLGRAVQAFEVLNSSEVG 716



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 76/334 (22%), Positives = 151/334 (45%), Gaps = 22/334 (6%)

Query: 202 QFQLIEQLAN---EMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGL----- 253
           +FQ++E   N   EM  + ++ D   Y + +      ++ D+A    + M   GL     
Sbjct: 433 KFQMVEDAENLLAEMRESGVKPDEYIYGSFVKLYCNSDMIDKATMVVQEMKDDGLESVCN 492

Query: 254 ----MP---------DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGK 300
                P         D    + +L   A++G++ E   L ++ V +G      A  ++  
Sbjct: 493 EREMFPLGQALQSPIDTQILNQLLIKRAEAGELREAELLLDKLVEAGGCIVDTAAVLMIN 552

Query: 301 MFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTP 360
           ++G  G +   + +   ++     P+L VYNT+++      +   A  +FD M E+G   
Sbjct: 553 LYGRRGLFQKAKSLFNSLQKKDHPPSLYVYNTMIKLCAVCKELEEAIFVFDRMEENGRMF 612

Query: 361 DEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLF 420
           D  T++ L+  Y K    KDA  L +R ++    MD + YNT L      G ++ A  ++
Sbjct: 613 DAVTVSILVHAYTKEGRFKDAAGLMKRAKKVGVAMDTVAYNTSLKANLKSGNLKGALEVY 672

Query: 421 EDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK 480
            +M+ +D  +P   +YT +++++   G++  A++ FE ++   V  + +  + +I C G 
Sbjct: 673 GEMQEAD-IEPSAKTYTILISLFSKLGDLGRAVQAFEVLNSSEVGADEIAYSQMIHCYGC 731

Query: 481 ARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVS 514
           A R  +   +F     +G KP++ +   LL   +
Sbjct: 732 AGRPKEAADLFQEMETKGFKPNEVIYNNLLDAFA 765


>gi|449463537|ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Cucumis sativus]
          Length = 786

 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 100/394 (25%), Positives = 181/394 (45%), Gaps = 24/394 (6%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNE--------IELDNIT 224
           FF W  SQ  F   T  Y + +  +   R +        E++ N           + ++ 
Sbjct: 149 FFKWAGSQVGFRHTTESYCIIVHLVFRARMYTDAHDTVKEVIMNSRMDMGFPVCNIFDML 208

Query: 225 YSTIITCAKRCNLFD-------------EAIEWFERMYKTGLMPDEVTYSAILDVYAKSG 271
           +ST   C     +FD             EA E F RM     +P   + + +L   +KSG
Sbjct: 209 WSTRNICVSGSGVFDVLFSVFVELGLLEEANECFSRMRNFRTLPKARSCNFLLHRLSKSG 268

Query: 272 KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYN 331
             + V   +   + +G  P    ++V+     + GD +  R +  +M+ +G+ P++V YN
Sbjct: 269 NGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYN 328

Query: 332 TLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN 391
           +L++  GK G      SLF+EM + G  PD  T   LI  Y K      A E +  M+ N
Sbjct: 329 SLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNN 388

Query: 392 KWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDN 451
               + + Y+TL++     G+++ A +LF DM+ +    P+ ++YT++++     GN+  
Sbjct: 389 GLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLL-PNEFTYTSLIDANCKAGNLTE 447

Query: 452 AIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
           A +L  +M + GV +N++  T L+  L KA R+ +   VF   +  G+ P+ ++   L+ 
Sbjct: 448 AWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVH 507

Query: 512 VVSLCETSEDVGKVITCLQQAN--PKLVAFLNLI 543
                E  ED  K++  + + N  P L+ + ++I
Sbjct: 508 GYIKAERMEDAMKILKQMTECNIKPDLILYGSII 541



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 98/346 (28%), Positives = 172/346 (49%), Gaps = 9/346 (2%)

Query: 206 IEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
           +  L NEM       D ITY+ +I C  +      A E+F  M   GL P+ VTYS ++D
Sbjct: 343 VASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLID 402

Query: 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325
            + K G ++  + L+     +G  P+   ++ L     ++G+      +L +M   GV+ 
Sbjct: 403 AFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKL 462

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
           N+V Y  LL+ + KAG+   A  +F  M++ G++P+++  TAL+  Y KA   +DA+++ 
Sbjct: 463 NIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKIL 522

Query: 386 ERMRENKWPMDFILYNTLL-NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYG 444
           ++M E     D ILY +++   C+   L EE + + E+MK S     +    T +++ Y 
Sbjct: 523 KQMTECNIKPDLILYGSIIWGHCSQRKL-EETKLILEEMK-SRGISANPVISTTIIDAYF 580

Query: 445 SGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR 504
             G   +A+  F+EM ++GV   ++    LI  L KA  ++  V  F   +  G++P+  
Sbjct: 581 KAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQPNVA 640

Query: 505 LCGCLLSVVSLCETS--EDVGKVITCLQ--QANPKLVAFLNLIEDN 546
           +   L+    LC+ +  E   K+   +Q     P + AF  LI+ N
Sbjct: 641 VYTSLID--GLCKNNCIESAKKLFDEMQCRGMTPDITAFTALIDGN 684



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 153/303 (50%), Gaps = 1/303 (0%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           +L N+M+   ++L+ +TY+ ++    +     EA E F  M K G+ P++  Y+A++  Y
Sbjct: 450 KLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGY 509

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            K+ ++E+ + + ++      KPD I +  +          +  + +L+EMKS G+  N 
Sbjct: 510 IKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANP 569

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
           V+  T+++A  KAGK   A + F EM + G+     T   LI    KA   + A++ + R
Sbjct: 570 VISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCKAGIVELAVDYFCR 629

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           M       +  +Y +L++       +E A++LF++M+      PD  ++TA+++     G
Sbjct: 630 MLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGM-TPDITAFTALIDGNLKHG 688

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCG 507
           N+  A+ L   M+EL +  ++   T L+    +   +    + F   I++G+ P++ LC 
Sbjct: 689 NLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPEEVLCI 748

Query: 508 CLL 510
           CLL
Sbjct: 749 CLL 751



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 86/177 (48%)

Query: 212 EMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG 271
           EM    +E   +TY  +I    +  + + A+++F RM   GL P+   Y++++D   K+ 
Sbjct: 594 EMQDVGVEATIVTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKNN 653

Query: 272 KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYN 331
            +E    L++     G  PD  AF+ L     + G+      ++  M  L ++ +L VY 
Sbjct: 654 CIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYT 713

Query: 332 TLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
           +L+    + G+   AR  F+EM+E G+ P+E     L++ Y K     +A+EL   M
Sbjct: 714 SLVSGFSQCGELHQARKFFNEMIEKGILPEEVLCICLLREYYKRGQLDEAIELKNEM 770


>gi|15224262|ref|NP_179484.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75099137|sp|O64624.1|PP163_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g18940
 gi|3004555|gb|AAC09028.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|15983785|gb|AAL10489.1| At2g18940/F19F24.14 [Arabidopsis thaliana]
 gi|38564280|gb|AAR23719.1| At2g18940/F19F24.14 [Arabidopsis thaliana]
 gi|330251736|gb|AEC06830.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 822

 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 93/340 (27%), Positives = 166/340 (48%), Gaps = 12/340 (3%)

Query: 142 LRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSL-RFG 200
           +RA T I H  +R            ++K+   F  +K     P   + YNV +    + G
Sbjct: 210 VRAYTTILHAYSRTGK---------YEKAIDLFERMKEMGPSPT-LVTYNVILDVFGKMG 259

Query: 201 RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTY 260
           R ++ I  + +EM S  ++ D  T ST+++   R  L  EA E+F  +   G  P  VTY
Sbjct: 260 RSWRKILGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTY 319

Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
           +A+L V+ K+G   E LS+ +    +    D + ++ L   +  +G       V++ M  
Sbjct: 320 NALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTK 379

Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380
            GV PN + Y T+++A GKAGK   A  LF  M E+G  P+  T  A++ + GK   + +
Sbjct: 380 KGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNE 439

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
            +++   M+ N    +   +NT+L +C + G+ +   R+F +MK   + +PD  ++  ++
Sbjct: 440 MIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGF-EPDRDTFNTLI 498

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK 480
           + YG  G+  +A +++ EM+  G    V     L+  L +
Sbjct: 499 SAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALAR 538



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 101/378 (26%), Positives = 174/378 (46%), Gaps = 7/378 (1%)

Query: 161 LNSLKFWQKSYFFFNWI---KSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNE 217
           L+    W+++ F F W+    +     ++     + ++ L    Q+ +  +L +++   E
Sbjct: 146 LDDSGHWERAVFLFEWLVLSSNSGALKLDHQVIEIFVRILGRESQYSVAAKLLDKIPLQE 205

Query: 218 IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKV-EEV 276
             LD   Y+TI+    R   +++AI+ FERM + G  P  VTY+ ILDV+ K G+   ++
Sbjct: 206 YLLDVRAYTTILHAYSRTGKYEKAIDLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKI 265

Query: 277 LSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA 336
           L + +   + G K D    S +       G     +    E+KS G +P  V YN LL+ 
Sbjct: 266 LGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQV 325

Query: 337 MGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMD 396
            GKAG    A S+  EM E+    D  T   L+  Y +A ++K+A  + E M +     +
Sbjct: 326 FGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPN 385

Query: 397 FILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELF 456
            I Y T+++     G  +EA +LF  MK +  C P+  +Y A+L++ G     +  I++ 
Sbjct: 386 AITYTTVIDAYGKAGKEDEALKLFYSMKEAG-CVPNTCTYNAVLSLLGKKSRSNEMIKML 444

Query: 457 EEMSELGVAINVMGCTCLIQCLGKARRIDDLV-RVFGVSIDRGVKPDDRLCGCLLSVVSL 515
            +M   G + N      ++   G  + +D  V RVF      G +PD      L+S    
Sbjct: 445 CDMKSNGCSPNRATWNTMLALCGN-KGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGR 503

Query: 516 CETSEDVGKVITCLQQAN 533
           C +  D  K+   + +A 
Sbjct: 504 CGSEVDASKMYGEMTRAG 521



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 64/330 (19%), Positives = 142/330 (43%), Gaps = 4/330 (1%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITC 231
            F  +K     P  T  YN  +  L +  R  ++I+ L  +M SN    +  T++T++  
Sbjct: 408 LFYSMKEAGCVP-NTCTYNAVLSLLGKKSRSNEMIKMLC-DMKSNGCSPNRATWNTMLAL 465

Query: 232 AKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291
                +       F  M   G  PD  T++ ++  Y + G   +   +Y     +G+   
Sbjct: 466 CGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNAC 525

Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
              ++ L       GD+     V+ +MKS G +P    Y+ +L+   K G       + +
Sbjct: 526 VTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIEN 585

Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411
            + E  + P    L  L+    K R    +   +   +++ +  D +++N++L++     
Sbjct: 586 RIKEGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNN 645

Query: 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC 471
           + ++AE + E ++  D   PD  +Y +++++Y   G    A E+ + + +  +  +++  
Sbjct: 646 MYDQAEGILESIR-EDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSY 704

Query: 472 TCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
             +I+   +   + + VR+     +RG++P
Sbjct: 705 NTVIKGFCRRGLMQEAVRMLSEMTERGIRP 734



 Score = 75.9 bits (185), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 104/218 (47%), Gaps = 7/218 (3%)

Query: 175 NWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKR 234
           N IK   +FP   +   + + + +  R     E+       +  + D + ++++++   R
Sbjct: 585 NRIKEGQIFPSWMLLRTLLLANFKC-RALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTR 643

Query: 235 CNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG---KVEEVLSLYERGVASGWKPD 291
            N++D+A    E + + GL PD VTY++++D+Y + G   K EE+L   E+   S  KPD
Sbjct: 644 NNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEK---SQLKPD 700

Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
            ++++ + K F   G       +L EM   G++P +  YNT +      G       + +
Sbjct: 701 LVSYNTVIKGFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMFAEIEDVIE 760

Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMR 389
            M ++   P+E T   ++  Y +A    +A++   +++
Sbjct: 761 CMAKNDCRPNELTFKMVVDGYCRAGKYSEAMDFVSKIK 798



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 56/293 (19%), Positives = 120/293 (40%), Gaps = 37/293 (12%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           W+      + +KS+   P ET  Y++ ++    G  +  IE++ N +   +I    +   
Sbjct: 542 WRSGENVISDMKSKGFKPTETS-YSLMLQCYAKGGNYLGIERIENRIKEGQIFPSWMLLR 600

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++    +C     +   F    K G  PD V ++++L ++ ++   ++   + E     
Sbjct: 601 TLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIRED 660

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G  PD + ++ L  M+   G+      +L+ ++   ++P+LV YNT+++   + G    A
Sbjct: 661 GLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQEA 720

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
             +  EM E G+ P                                       YNT ++ 
Sbjct: 721 VRMLSEMTERGIRP-----------------------------------CIFTYNTFVSG 745

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
              +G+  E E + E M  +D C+P+  ++  +++ Y   G    A++   ++
Sbjct: 746 YTAMGMFAEIEDVIECMAKND-CRPNELTFKMVVDGYCRAGKYSEAMDFVSKI 797


>gi|302771417|ref|XP_002969127.1| hypothetical protein SELMODRAFT_61162 [Selaginella moellendorffii]
 gi|300163632|gb|EFJ30243.1| hypothetical protein SELMODRAFT_61162 [Selaginella moellendorffii]
          Length = 646

 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 110/465 (23%), Positives = 200/465 (43%), Gaps = 58/465 (12%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNE-IELDNITY 225
           W+K+   F WI+  + F +  +     +  L    Q     +L   +  +E   LD   Y
Sbjct: 18  WKKALEVFEWIRKHDCFKLRGVATASILSVLGNHEQLPAALELFESLKQDESYSLDVYAY 77

Query: 226 STIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG-------------- 271
           +++I+   R   FDE I  FE M + G   + VTY+ +LD+Y K G              
Sbjct: 78  TSLISILSRARRFDEGITLFETMQREGQRGNAVTYNVMLDLYGKRGDSWDRIQSLFQEMK 137

Query: 272 ----------------------KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
                                   +E L L++    +G  P+ + ++ L  ++G+ G + 
Sbjct: 138 DLEISPDDYTYNTMITACIQNSHCQEALRLFQEMKEAGCCPNRVTYNALLDVYGKGGMHK 197

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               +L EM++ G+ PN+V YN L+ A  +AG    A +L   ++  GL PDE T   LI
Sbjct: 198 EASELLVEMEAAGISPNIVTYNELIAAYARAGLCDEAAALKKSLLSKGLCPDEFTYCTLI 257

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
             + +A   + ALE +  MR+     + + YN L+++   +  +++  ++F+ M+  + C
Sbjct: 258 SAFNRAERYEKALETFTEMRKTNCTPNIVTYNILIDIYGRMEKLDDMMKVFKFMQEKN-C 316

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
            PD  ++ ++L  +G+ G +     +F EM   G    V     LI+C G+   +D  V 
Sbjct: 317 TPDLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTFNILIECYGRCGYVDYSVD 376

Query: 490 VFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKL--VAFLNLIED-- 545
           ++   +  G++P       L++ ++     +   KV   + +A  +L       LI    
Sbjct: 377 IYKGLLRTGLQPTVPTFAALMASLAREGRWQQCEKVSQEMAEAGLQLSDACHAGLIHSYA 436

Query: 546 NSTGFENIKEEFRNVIKDTEVDARRP------------FCNCLID 578
           NS  F     + R  I + E  A++P            +C C +D
Sbjct: 437 NSGQF----FQLRKYIDELEKSAKQPLSGILCKTFVLAYCKCCMD 477



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/358 (24%), Positives = 163/358 (45%), Gaps = 7/358 (1%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQL--I 206
           P + T    +   N  + ++K+   F  ++  N  P   + YN+ +    +GR  +L  +
Sbjct: 248 PDEFTYCTLISAFNRAERYEKALETFTEMRKTNCTP-NIVTYNILIDI--YGRMEKLDDM 304

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
            ++   M       D +T+++++     C +  E    F  M + G MP   T++ +++ 
Sbjct: 305 MKVFKFMQEKNCTPDLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTFNILIEC 364

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
           Y + G V+  + +Y+  + +G +P    F+ L       G +     V QEM   G+Q +
Sbjct: 365 YGRCGYVDYSVDIYKGLLRTGLQPTVPTFAALMASLAREGRWQQCEKVSQEMAEAGLQLS 424

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT-ALIKIYGKARWAKDALELW 385
              +  L+ +   +G+    R   DE+ +S   P    L    +  Y K     +A    
Sbjct: 425 DACHAGLIHSYANSGQFFQLRKYIDELEKSAKQPLSGILCKTFVLAYCKCCMDNEAQLAL 484

Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445
            ++ +N    D  ++N +++MCA  G +E A +L E+++ +   KPD  +Y  ++++YG 
Sbjct: 485 NQLYDNGHSPDIKVFNAMISMCAKRGWIERAVKLLEEIRKAQL-KPDGVTYNCLMSMYGR 543

Query: 446 GGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
            G    A E+  EM   G A N++    L+    K  R+DD  RVFG  +   V+PD+
Sbjct: 544 EGMYHKAEEVMSEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVFGDMVAARVRPDN 601



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 99/206 (48%)

Query: 200 GRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVT 259
           G+ FQL + +     S +  L  I   T +    +C + +EA     ++Y  G  PD   
Sbjct: 439 GQFFQLRKYIDELEKSAKQPLSGILCKTFVLAYCKCCMDNEAQLALNQLYDNGHSPDIKV 498

Query: 260 YSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMK 319
           ++A++ + AK G +E  + L E    +  KPD + ++ L  M+G  G Y     V+ EM+
Sbjct: 499 FNAMISMCAKRGWIERAVKLLEEIRKAQLKPDGVTYNCLMSMYGREGMYHKAEEVMSEMR 558

Query: 320 SLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAK 379
             G  PNL+ YNTLL +  K G+   A  +F +MV + + PD  T   L+  Y      K
Sbjct: 559 RAGKAPNLITYNTLLYSYTKHGRMDDAARVFGDMVAARVRPDNFTFNTLVGSYSSLGLYK 618

Query: 380 DALELWERMRENKWPMDFILYNTLLN 405
           +AL + E M E+      I +  LL+
Sbjct: 619 EALSVIEYMTEHGCQPTQITFKALLD 644



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/255 (22%), Positives = 110/255 (43%), Gaps = 2/255 (0%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           +   M SL    ++Q  E+++ EM    ++L +  ++ +I        F +  ++ + + 
Sbjct: 393 FAALMASLAREGRWQQCEKVSQEMAEAGLQLSDACHAGLIHSYANSGQFFQLRKYIDELE 452

Query: 250 KTGLMP-DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY 308
           K+   P   +     +  Y K     E      +   +G  PD   F+ +  M  + G  
Sbjct: 453 KSAKQPLSGILCKTFVLAYCKCCMDNEAQLALNQLYDNGHSPDIKVFNAMISMCAKRGWI 512

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
           +    +L+E++   ++P+ V YN L+   G+ G    A  +  EM  +G  P+  T   L
Sbjct: 513 ERAVKLLEEIRKAQLKPDGVTYNCLMSMYGREGMYHKAEEVMSEMRRAGKAPNLITYNTL 572

Query: 369 IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428
           +  Y K     DA  ++  M   +   D   +NTL+   + +GL +EA  + E M     
Sbjct: 573 LYSYTKHGRMDDAARVFGDMVAARVRPDNFTFNTLVGSYSSLGLYKEALSVIEYMT-EHG 631

Query: 429 CKPDNYSYTAMLNIY 443
           C+P   ++ A+L+ Y
Sbjct: 632 CQPTQITFKALLDGY 646



 Score = 45.4 bits (106), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 5/90 (5%)

Query: 178 KSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNL 237
           K+ NL    T+ Y+ T    + GR      ++  +MV+  +  DN T++T++       L
Sbjct: 562 KAPNLITYNTLLYSYT----KHGR-MDDAARVFGDMVAARVRPDNFTFNTLVGSYSSLGL 616

Query: 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           + EA+   E M + G  P ++T+ A+LD Y
Sbjct: 617 YKEALSVIEYMTEHGCQPTQITFKALLDGY 646


>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
 gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
          Length = 1636

 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 95/303 (31%), Positives = 145/303 (47%), Gaps = 2/303 (0%)

Query: 184  PMETIFYNVTMKSLRFGRQFQLIEQLANEMV-SNEIELDNITYSTIITCAKRCNLFDEAI 242
            P   I +NV +K L   R+     +L  EM  S     D  TYSTI+    +    D+A 
Sbjct: 909  PQNVILHNVVIKGLCSARKLDSALELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDAC 968

Query: 243  EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
               E M   G  P+ VTYS++L    K+GK++E  +L +R   SG  P+ + ++ +    
Sbjct: 969  RLVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGH 1028

Query: 303  GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
             + G  D   ++L+EM   G QPN+V Y  LL+A  K GK   A  L + MVE G  P+ 
Sbjct: 1029 CKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNL 1088

Query: 363  KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED 422
             T  +L+ ++ K    + A +L   M +     + + YNT++        V E   L E 
Sbjct: 1089 FTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQ 1148

Query: 423  MKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKAR 482
            M LS+ C PD  ++  +++       VD A ELF  + E G   N++    L+  L K+R
Sbjct: 1149 M-LSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSR 1207

Query: 483  RID 485
            R D
Sbjct: 1208 RFD 1210



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 89/313 (28%), Positives = 152/313 (48%), Gaps = 5/313 (1%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           +L  +M       + ITY+ I+    R N  + A +  + M +TG  PD + YS I+  +
Sbjct: 356 ELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGF 415

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            K+GK+ E   L E+ +  G +PD    S L     ++   D  + +L+    +   P++
Sbjct: 416 CKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPDV 475

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
           V Y+ L+ A+ KA +   A S  D MV++   PD  T  +++    K+R   DA  L++R
Sbjct: 476 VAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDR 535

Query: 388 MRENKWPMDFILYNTLLN-MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
           MR      D + Y+ +++  C D  L + A ++ E MK +  C PD  +Y+A++N     
Sbjct: 536 MRAAGVMPDVVTYSIVIHSFCKDNNL-DSAFKMLERMKEAK-CVPDVVTYSALINGLCKA 593

Query: 447 GNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLC 506
           G VD A ++F+EM   G A N++    LI  L K  +++    +  +   +   PD    
Sbjct: 594 GTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSITY 653

Query: 507 GCLLSVVSLCETS 519
            CL++   LC  S
Sbjct: 654 TCLIN--GLCNAS 664



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 90/327 (27%), Positives = 151/327 (46%), Gaps = 8/327 (2%)

Query: 223  ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
            +TY+TII    +    DEA    E M   G  P+ VTY+ +LD + K GK E+ + L E 
Sbjct: 1019 VTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEV 1078

Query: 283  GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
             V  G+ P+   ++ L  MF +  + +    +L  M   G  PN+V YNT++  + KA K
Sbjct: 1079 MVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATK 1138

Query: 343  PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
                  L ++M+ +   PD  T   +I    K      A EL+  ++E+    + + YN+
Sbjct: 1139 VHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNS 1198

Query: 403  LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
            L++        ++AE L  +M     C PD  +Y  +++       VD A +LF +M   
Sbjct: 1199 LVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSD 1258

Query: 463  GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDV 522
            G+A + +  + +I  L K R +D+   V  + +  G  P     G L+     C+T  ++
Sbjct: 1259 GLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLID--GFCKTG-NL 1315

Query: 523  GKVITCLQ-----QANPKLVAFLNLIE 544
             K +  LQ      + P +V F   I+
Sbjct: 1316 DKALEILQLLLSKGSYPDVVTFSIFID 1342



 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 87/323 (26%), Positives = 145/323 (44%), Gaps = 1/323 (0%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           I YN  M         +   Q+   M+      D I YSTII+   +     EA +  E+
Sbjct: 371 ITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQ 430

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M + G  PD    S ++D   K+  ++    L    +     PD +A+S+L     ++  
Sbjct: 431 MIRRGCRPDVACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHALCKAKR 490

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
                  L  M      P++V YN++++ + K+ +   A  LFD M  +G+ PD  T + 
Sbjct: 491 LPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSI 550

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           +I  + K      A ++ ERM+E K   D + Y+ L+N     G V++A  +F++M L  
Sbjct: 551 VIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQEM-LGC 609

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
            C P+  +Y  +++       V+ A E+ E M +     + +  TCLI  L  A R+++ 
Sbjct: 610 GCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSITYTCLINGLCNASRLEEA 669

Query: 488 VRVFGVSIDRGVKPDDRLCGCLL 510
            RV     D+G  PD    G LL
Sbjct: 670 WRVLREMKDKGCLPDRMTYGTLL 692



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/282 (25%), Positives = 134/282 (47%), Gaps = 1/282 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D++TY+T+I    + +  D+AI   E M   G  P+  +Y+ +L  + K+ +VE  L L 
Sbjct: 229 DSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLL 288

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
           E+ V  G  PD ++++ +     +    D    V+ +M   G QPN++ Y TL++   + 
Sbjct: 289 EQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRV 348

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G    A  L  +M E G  P+  T   ++ ++ +    + A ++ + M +   P D I Y
Sbjct: 349 GDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINY 408

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           +T+++     G + EA  L E M +   C+PD    + +++       +D+A EL     
Sbjct: 409 STIISGFCKAGKLREAHDLLEQM-IRRGCRPDVACLSTLIDALCKAAAIDSAQELLRMSI 467

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            +  A +V+  + LI  L KA+R+ +      V +     PD
Sbjct: 468 GMDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPD 509



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 77/311 (24%), Positives = 143/311 (45%), Gaps = 6/311 (1%)

Query: 181 NLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDE 240
           N+F   T+ +    K+ R      L+EQ    MV+     D ++Y+T+I    + +  DE
Sbjct: 264 NVFSYNTVLHGFC-KANRVENALWLLEQ----MVTRGCPPDVVSYTTVINGLCKLDQVDE 318

Query: 241 AIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGK 300
           A    ++M + G  P+ +TY  ++D + + G ++  + L  +    G++P+ I ++ +  
Sbjct: 319 ACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMH 378

Query: 301 MFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTP 360
           +F    D +    VLQ M   G  P+ + Y+T++    KAGK   A  L ++M+  G  P
Sbjct: 379 VFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRP 438

Query: 361 DEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLF 420
           D   L+ LI    KA     A EL           D + Y+ L++       + EAE   
Sbjct: 439 DVACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHALCKAKRLPEAESWL 498

Query: 421 EDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK 480
            D+ + + C PD  +Y ++++       +++A  LF+ M   GV  +V+  + +I    K
Sbjct: 499 -DVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCK 557

Query: 481 ARRIDDLVRVF 491
              +D   ++ 
Sbjct: 558 DNNLDSAFKML 568



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 115/239 (48%), Gaps = 1/239 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D + YS +I    +     EA  W + M K    PD VTY++++D   KS ++ +   L+
Sbjct: 474 DVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLF 533

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
           +R  A+G  PD + +S++   F +  + D    +L+ MK     P++V Y+ L+  + KA
Sbjct: 534 DRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLCKA 593

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G    A  +F EM+  G  P+  T   LI    K    + A E+ E MR+     D I Y
Sbjct: 594 GTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSITY 653

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
             L+N   +   +EEA R+  +MK    C PD  +Y  +L       N++   +L +EM
Sbjct: 654 TCLINGLCNASRLEEAWRVLREMK-DKGCLPDRMTYGTLLRALQKTNNLELVEQLLKEM 711



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 74/319 (23%), Positives = 145/319 (45%), Gaps = 1/319 (0%)

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           P +++ YN  +  L    +     +L  EMV N    +  +Y+T++    + N  + A+ 
Sbjct: 227 PPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALW 286

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
             E+M   G  PD V+Y+ +++   K  +V+E   + ++ +  G +P+ I +  L   F 
Sbjct: 287 LLEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFC 346

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
             GD DG   ++++M   G +PN + YN ++    +      A  +   M+++G  PD  
Sbjct: 347 RVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAI 406

Query: 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
             + +I  + KA   ++A +L E+M       D    +TL++       ++ A+ L   M
Sbjct: 407 NYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELLR-M 465

Query: 424 KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483
            +   C PD  +Y+ +++       +  A    + M +     +V+    ++  L K+RR
Sbjct: 466 SIGMDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRR 525

Query: 484 IDDLVRVFGVSIDRGVKPD 502
           I+D   +F      GV PD
Sbjct: 526 INDAFLLFDRMRAAGVMPD 544



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 147/314 (46%), Gaps = 18/314 (5%)

Query: 170  SYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNE-IELDNITYSTI 228
            +Y  FN I+     P   + YN  +  L   R+F   E L  EM   +    D ITY+T+
Sbjct: 1177 AYELFNLIQESGCTP-NLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTV 1235

Query: 229  ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
            I    +    D A + F +M   GL PD+VTYS ++    K   ++E  ++ E  + +G+
Sbjct: 1236 IDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGF 1295

Query: 289  KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348
             P  I +  L   F ++G+ D    +LQ + S G  P++V ++  ++ + K G+   A  
Sbjct: 1296 DPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGE 1355

Query: 349  LFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCA 408
            L + M+ +GL PD  T   L+K +  A   +DA++L+E MR+     D   Y TL+    
Sbjct: 1356 LLETMLRAGLVPDTVTYNTLLKGFCDASLTEDAVDLFEVMRQCGCEPDNATYTTLVGHLV 1415

Query: 409  D----IGLVEEAERLFED------------MKLSDYCKPDNYSYTAMLNIYGSGGNVDNA 452
            D      L+ E  +   D            ++ S   + D     A+++++G  G+  +A
Sbjct: 1416 DKKSYKDLLAEVSKSMVDTGFKLNHELSSKLEASIEVEADVRLGCAIVDMFGKCGSPQDA 1475

Query: 453  IELFEEMSELGVAI 466
             ++FE M +  V +
Sbjct: 1476 RKVFEGMDQRNVVL 1489



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 145/297 (48%), Gaps = 2/297 (0%)

Query: 208  QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
            QL + M+      + ++Y+T+I    +     E +   E+M     +PD VT++ I+D  
Sbjct: 1109 QLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAM 1168

Query: 268  AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEM-KSLGVQPN 326
             K+ +V+    L+     SG  P+ + ++ L     +S  +D   Y+L+EM +  G  P+
Sbjct: 1169 CKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPD 1228

Query: 327  LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
            ++ YNT+++ + K+ +   A  LF +M+  GL PD+ T + +I    K R+  +A  + E
Sbjct: 1229 IITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLE 1288

Query: 387  RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
             M +N +    I Y TL++     G +++A  + + + LS    PD  +++  ++     
Sbjct: 1289 LMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQ-LLLSKGSYPDVVTFSIFIDWLSKR 1347

Query: 447  GNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
            G +  A EL E M   G+  + +    L++    A   +D V +F V    G +PD+
Sbjct: 1348 GRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASLTEDAVDLFEVMRQCGCEPDN 1404



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 88/383 (22%), Positives = 171/383 (44%), Gaps = 6/383 (1%)

Query: 138 EEAFLRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSL 197
           E+A   A+ E   Q + E    +L  L     +  FF W ++++ +  E    N  +  L
Sbjct: 77  EQALRVALDEYRGQLSPEIVGKVLQRLIDPGAALVFFEWAETRDGYQHEIFCCNCLLNVL 136

Query: 198 RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDE 257
               Q+     L    +  +   D +TYST+I+   R      A E F+ M + GL    
Sbjct: 137 VKAHQYSQAHDLFRSRIEGQWGGDTVTYSTLISGFIRAGKILPAYELFDEMNRKGLKAHA 196

Query: 258 VTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQE 317
             + +IL     +G+  + + L+ R ++    PD + ++ +     +S   D    +L+E
Sbjct: 197 GVHKSILRGLCDAGQCSDAV-LHFREMSKTCPPDSVTYNTMINGLSKSDRLDDAIRLLEE 255

Query: 318 MKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARW 377
           M   G  PN+  YNT+L    KA +   A  L ++MV  G  PD  + T +I    K   
Sbjct: 256 MVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVTRGCPPDVVSYTTVINGLCKLDQ 315

Query: 378 AKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYT 437
             +A  + ++M +     + I Y TL++    +G ++ A  L   M    Y +P+  +Y 
Sbjct: 316 VDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGY-RPNAITYN 374

Query: 438 AMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDR 497
            +++++    +++ A ++ + M + G   + +  + +I    KA ++ +   +    I R
Sbjct: 375 NIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRR 434

Query: 498 GVKPDDRLCGCLLSVV-SLCETS 519
           G +PD     CL +++ +LC+ +
Sbjct: 435 GCRPD---VACLSTLIDALCKAA 454



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 115/242 (47%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + Y++ + +L   ++    E   + MV N    D +TY++++    +    ++A   F
Sbjct: 474 DVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLF 533

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           +RM   G+MPD VTYS ++  + K   ++    + ER   +   PD + +S L     ++
Sbjct: 534 DRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLCKA 593

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G  D    V QEM   G  PNLV YNTL++ + K  K   A  + + M +   TPD  T 
Sbjct: 594 GTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSITY 653

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
           T LI     A   ++A  +   M++     D + Y TLL        +E  E+L ++M+ 
Sbjct: 654 TCLINGLCNASRLEEAWRVLREMKDKGCLPDRMTYGTLLRALQKTNNLELVEQLLKEMEA 713

Query: 426 SD 427
           ++
Sbjct: 714 TE 715



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 98/417 (23%), Positives = 183/417 (43%), Gaps = 48/417 (11%)

Query: 239  DEAIEWFE-RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
            D A+ +F+    + G   D  T + +L    +  + ++ L +Y   +     P+   F++
Sbjct: 825  DAALGFFDWATSQEGYNHDTYTCNCLLQALLRLKRPKDALQVYRNKLCC--SPNMFTFTI 882

Query: 298  LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
            L      +GD      +L+EM   GV  N++++N +++ +  A K   A  LF EM ESG
Sbjct: 883  LIHGLCRAGDIGTAYELLKEMPRHGVPQNVILHNVVIKGLCSARKLDSALELFKEMEESG 942

Query: 358  -LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEA 416
               PD  T + ++    K+    DA  L E M       + + Y++LL+     G ++EA
Sbjct: 943  SCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEA 1002

Query: 417  ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
              L + M  S  C P+  +Y  +++ +   G +D A  L EEM + G   NV+  T L+ 
Sbjct: 1003 TALLQRMTRSG-CSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLD 1061

Query: 477  CLGKARRIDDLVRVFGVSIDRGVKPD-----------------DRLC---------GCLL 510
               K  + +D + +  V +++G  P+                 +R C         GC+ 
Sbjct: 1062 AFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVP 1121

Query: 511  SVVS-------LCETSEDVGKVITCLQQ-----ANPKLVAFLNLIEDNSTGFE-NIKEEF 557
            +VVS       LC+ ++ V + +  L+Q       P +V F  +I+     +  +I  E 
Sbjct: 1122 NVVSYNTVIAGLCKATK-VHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYEL 1180

Query: 558  RNVIKDTEVDARRPFCNCLID-ICRNRNLNERAHELLYLGTLYGLYPGL--HNKTLD 611
             N+I+++         N L+  +C++R  ++  + L  +    G  P +  +N  +D
Sbjct: 1181 FNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVID 1237



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 79/373 (21%), Positives = 139/373 (37%), Gaps = 89/373 (23%)

Query: 169  KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
            ++Y  F  + S  L P + + Y++ + SL   R       +   M+ N  +   ITY T+
Sbjct: 1247 RAYKLFLQMLSDGLAP-DDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTL 1305

Query: 229  ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
            I    +    D+A+E  + +   G  PD VT+S  +D  +K G++ +   L E  + +G 
Sbjct: 1306 IDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGL 1365

Query: 289  KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTL--------------- 333
             PD + ++ L K F ++   +    + + M+  G +P+   Y TL               
Sbjct: 1366 VPDTVTYNTLLKGFCDASLTEDAVDLFEVMRQCGCEPDNATYTTLVGHLVDKKSYKDLLA 1425

Query: 334  --------------------LEA-----------------MGKAGKPGLARSLFDEMVES 356
                                LEA                  GK G P  AR +F+ M + 
Sbjct: 1426 EVSKSMVDTGFKLNHELSSKLEASIEVEADVRLGCAIVDMFGKCGSPQDARKVFEGMDQR 1485

Query: 357  GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEA 416
             +       +A++ +Y   +  + A  LW  M       D + + +LL MC   GL++ A
Sbjct: 1486 NVV----LWSAMLGVYVFHKQEEQAFGLWRVMGLEGVEPDAVTFLSLLTMCCHAGLLDAA 1541

Query: 417  ERLF--------------------------------EDMKLSDYCKPDNYSYTAMLNIYG 444
               F                                ED+ L   CKP   ++  +L+ Y 
Sbjct: 1542 VDEFVSISRDYGLEPGVDHFSCVIDLLGRLGLVNEAEDLMLGMPCKPSAATWNCLLSAYK 1601

Query: 445  SGGNVDNAIELFE 457
              G+ + A+ + E
Sbjct: 1602 ICGDFERALRVAE 1614


>gi|302761054|ref|XP_002963949.1| hypothetical protein SELMODRAFT_166434 [Selaginella moellendorffii]
 gi|300167678|gb|EFJ34282.1| hypothetical protein SELMODRAFT_166434 [Selaginella moellendorffii]
          Length = 1365

 Score =  139 bits (350), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 121/579 (20%), Positives = 239/579 (41%), Gaps = 41/579 (7%)

Query: 164  LKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNI 223
            LK WQ +   F  ++ Q+ F   T  Y+  + +      F+   +  + MV+  ++ +  
Sbjct: 659  LKLWQNAEIVFRDLQ-QHGFAGNTSAYSALLSAYAETGNFERATRALDNMVAAGLQPNAT 717

Query: 224  TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
              + ++    R     E  E+F+R+ + G+ P+  T+  I   ++++G +EE  S+Y + 
Sbjct: 718  CANYVLEAFGRAGKAKEISEFFQRLPEMGISPNSRTFVVIFHAFSRNGNLEEARSMYRQM 777

Query: 284  VASGWKPDPIAFSVLGKMFGES-----------------------------------GDY 308
              +G+ P    F  L  ++                                      G Y
Sbjct: 778  KEAGFSPSIQVFKALLALYSRETVEIDAEELVKDIKKAGLELDIDIYNHMISLYSKLGSY 837

Query: 309  DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
                 V + M+ +G  P+   +NTL+    +      A++L  EM+++G  P+  T T L
Sbjct: 838  RNAALVFKGMQEIGCSPDATTFNTLIMLYSRNQMVQEAQALLREMIKTGNAPNISTYTTL 897

Query: 369  IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428
            I  YG+ +  +DA  +++ + E     D   YN ++N+    G   + E + E MK+  +
Sbjct: 898  ISAYGRLQAYEDAELVFKSIAETGCKPDATAYNVMINVYRKAGEHRKIEEIIEQMKVDGF 957

Query: 429  CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLV 488
             +P   +   +++ YG GG    A E+ E + E+G++ + +  T +I      +     V
Sbjct: 958  -EPSLTTIHMLMDSYGKGGATGKAEEVLETLPEIGMSPDAIHYTSIINSHLNNKDYLSAV 1016

Query: 489  RVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNST 548
                   D  V+P      C +   S+CE S     ++  L +A   L   L L+ + + 
Sbjct: 1017 IWLRKMTDACVRPTHVTITCFVGAASVCERSSHALMLLKALSEAGFSLP--LRLMTECTP 1074

Query: 549  GFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNK 608
                  ++  + ++++  +A +   N L+D+         A  +  +     +Y  +  +
Sbjct: 1075 KVVQDMQDIFDQLQESGPEACQGVVNVLMDLLWAFRQCATAALVFAVAIESNIYTQVLAR 1134

Query: 609  TLDE-WSLDVRSLSVGAAQTALEEWMWTLAKIVLR-EEVLPQLFLAETGTGTHKFSQGLA 666
              D  W  D R LS GA+  AL  W+  +    L+   V P+    + G+        + 
Sbjct: 1135 VKDRNWGADFRRLSPGASLVALILWLDQMQDASLQGSPVPPKSIQIDIGSSKLNNQASVR 1194

Query: 667  TAFASHVNKLAAPFRQSEGKAGCFVATREDLVSWVQARP 705
                +H+ ++ +PF  S+ +AG  VA    L  W++  P
Sbjct: 1195 NTIKAHLWQMGSPFLPSKTRAGVLVAKSHALCMWLKESP 1233



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 91/353 (25%), Positives = 166/353 (47%), Gaps = 5/353 (1%)

Query: 115 YSYNPRVRDLKL-FARKLNDCDNTEEAFLRAITEIPHQPTRENALL-ILNSLKFWQKSYF 172
           Y+ NPR+  + L    + N     +E F RA + I +     N+L+ +      W     
Sbjct: 87  YAPNPRMLAVMLSVLGRANQPGLAQELFDRAESSIGNCVQVYNSLMSVYARHGDWNSVQQ 146

Query: 173 FFNWIKSQNLFPMETIFYNVTMKS-LRFGRQFQLIEQLANEMVSNEIELDNITYSTIITC 231
               ++ +   P + + +N+ +K+  R G Q  L   L  ++ +  +  D ITY+T+I+ 
Sbjct: 147 LLCRMQDRGCRP-DLVTFNIVIKARTRGGMQEGLASSLLQDVYAAGLRPDTITYNTLISA 205

Query: 232 AKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291
               N   +AI  FE M + G  PD  TY+A++ VY ++G+VE   S++      G+ PD
Sbjct: 206 CSLNNRLSDAILIFEEMQRQGCDPDIWTYNAMISVYGRAGRVEAASSIFRIMQEQGFTPD 265

Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
            + ++ +   F   G  + +  +   M+      + + YNT++   GKAG    A  L+ 
Sbjct: 266 AVTYNSVLHAFARDGRIEEVERIRGMMRDARCSSDEITYNTMIHMYGKAGMHRKAEELYV 325

Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411
           +M E G  PD  T T LI   GKA +  +A  ++E M +++       ++ ++   A   
Sbjct: 326 QMKEEGRCPDSVTFTVLIDTLGKAGFVNEAAAMFEDMLKSQVRPTLQAFSAMICAYAKAD 385

Query: 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
           +  +AE  +  M L    +PD  +Y+ ML+++   G  +  I L++ M   G+
Sbjct: 386 MFTDAEHTYSCM-LRAGVRPDLLAYSVMLDVFFKAGMPEKCIILYKAMVGSGL 437



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 142/284 (50%), Gaps = 4/284 (1%)

Query: 259 TYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGI-RYVLQE 317
            Y++++ VYA+ G    V  L  R    G +PD + F+++ K     G  +G+   +LQ+
Sbjct: 127 VYNSLMSVYARHGDWNSVQQLLCRMQDRGCRPDLVTFNIVIKARTRGGMQEGLASSLLQD 186

Query: 318 MKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARW 377
           + + G++P+ + YNTL+ A     +   A  +F+EM   G  PD  T  A+I +YG+A  
Sbjct: 187 VYAAGLRPDTITYNTLISACSLNNRLSDAILIFEEMQRQGCDPDIWTYNAMISVYGRAGR 246

Query: 378 AKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYT 437
            + A  ++  M+E  +  D + YN++L+  A  G +EE ER+   M     C  D  +Y 
Sbjct: 247 VEAASSIFRIMQEQGFTPDAVTYNSVLHAFARDGRIEEVERI-RGMMRDARCSSDEITYN 305

Query: 438 AMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDR 497
            M+++YG  G    A EL+ +M E G   + +  T LI  LGKA  +++   +F   +  
Sbjct: 306 TMIHMYGKAGMHRKAEELYVQMKEEGRCPDSVTFTVLIDTLGKAGFVNEAAAMFEDMLKS 365

Query: 498 GVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAF 539
            V+P  +    ++   +  +   D     +C+ +A   P L+A+
Sbjct: 366 QVRPTLQAFSAMICAYAKADMFTDAEHTYSCMLRAGVRPDLLAY 409



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 136/292 (46%), Gaps = 1/292 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D+  +  II    +  L+  A   F  + + G   +   YSA+L  YA++G  E      
Sbjct: 645 DSAMHVAIIASYGKLKLWQNAEIVFRDLQQHGFAGNTSAYSALLSAYAETGNFERATRAL 704

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
           +  VA+G +P+    + + + FG +G    I    Q +  +G+ PN   +  +  A  + 
Sbjct: 705 DNMVAAGLQPNATCANYVLEAFGRAGKAKEISEFFQRLPEMGISPNSRTFVVIFHAFSRN 764

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G    ARS++ +M E+G +P  +   AL+ +Y +     DA EL + +++    +D  +Y
Sbjct: 765 GNLEEARSMYRQMKEAGFSPSIQVFKALLALYSRETVEIDAEELVKDIKKAGLELDIDIY 824

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           N ++++ + +G    A  +F+ M+    C PD  ++  ++ +Y     V  A  L  EM 
Sbjct: 825 NHMISLYSKLGSYRNAALVFKGMQ-EIGCSPDATTFNTLIMLYSRNQMVQEAQALLREMI 883

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSV 512
           + G A N+   T LI   G+ +  +D   VF    + G KPD      +++V
Sbjct: 884 KTGNAPNISTYTTLISAYGRLQAYEDAELVFKSIAETGCKPDATAYNVMINV 935



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 98/200 (49%), Gaps = 1/200 (0%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F  ++ Q   P + + YN  + +     + + +E++   M       D ITY+T+I   
Sbjct: 253 IFRIMQEQGFTP-DAVTYNSVLHAFARDGRIEEVERIRGMMRDARCSSDEITYNTMIHMY 311

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +  +  +A E + +M + G  PD VT++ ++D   K+G V E  +++E  + S  +P  
Sbjct: 312 GKAGMHRKAEELYVQMKEEGRCPDSVTFTVLIDTLGKAGFVNEAAAMFEDMLKSQVRPTL 371

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
            AFS +   + ++  +    +    M   GV+P+L+ Y+ +L+   KAG P     L+  
Sbjct: 372 QAFSAMICAYAKADMFTDAEHTYSCMLRAGVRPDLLAYSVMLDVFFKAGMPEKCIILYKA 431

Query: 353 MVESGLTPDEKTLTALIKIY 372
           MV SGL P+      +++++
Sbjct: 432 MVGSGLKPELSVYAIMVRVF 451



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/250 (23%), Positives = 115/250 (46%), Gaps = 38/250 (15%)

Query: 255 PDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYV 314
           P+    + +L V  ++ +      L++R  +S      + ++ L  ++   GD++ ++ +
Sbjct: 89  PNPRMLAVMLSVLGRANQPGLAQELFDRAESSIGNCVQV-YNSLMSVYARHGDWNSVQQL 147

Query: 315 LQEMKSLGVQPNLVVYNTLLEAMGKAG-KPGLARSLFDEMVESGLTPDEKTLTALIKIYG 373
           L  M+  G +P+LV +N +++A  + G + GLA SL  ++  +GL PD            
Sbjct: 148 LCRMQDRGCRPDLVTFNIVIKARTRGGMQEGLASSLLQDVYAAGLRPDT----------- 196

Query: 374 KARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDN 433
                                   I YNTL++ C+    + +A  +FE+M+    C PD 
Sbjct: 197 ------------------------ITYNTLISACSLNNRLSDAILIFEEMQRQG-CDPDI 231

Query: 434 YSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGV 493
           ++Y AM+++YG  G V+ A  +F  M E G   + +    ++    +  RI+++ R+ G+
Sbjct: 232 WTYNAMISVYGRAGRVEAASSIFRIMQEQGFTPDAVTYNSVLHAFARDGRIEEVERIRGM 291

Query: 494 SIDRGVKPDD 503
             D     D+
Sbjct: 292 MRDARCSSDE 301



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 99/209 (47%), Gaps = 12/209 (5%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLM------PDEVTYSAILDVYAKSGKVE 274
           D +TY++++    R    D  IE  ER+   G+M       DE+TY+ ++ +Y K+G   
Sbjct: 265 DAVTYNSVLHAFAR----DGRIEEVERI--RGMMRDARCSSDEITYNTMIHMYGKAGMHR 318

Query: 275 EVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLL 334
           +   LY +    G  PD + F+VL    G++G  +    + ++M    V+P L  ++ ++
Sbjct: 319 KAEELYVQMKEEGRCPDSVTFTVLIDTLGKAGFVNEAAAMFEDMLKSQVRPTLQAFSAMI 378

Query: 335 EAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWP 394
            A  KA     A   +  M+ +G+ PD    + ++ ++ KA   +  + L++ M  +   
Sbjct: 379 CAYAKADMFTDAEHTYSCMLRAGVRPDLLAYSVMLDVFFKAGMPEKCIILYKAMVGSGLK 438

Query: 395 MDFILYNTLLNMCADIGLVEEAERLFEDM 423
            +  +Y  ++ +      V E E L ++M
Sbjct: 439 PELSVYAIMVRVFYQKSSVAEIENLSKEM 467



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/267 (20%), Positives = 118/267 (44%), Gaps = 6/267 (2%)

Query: 160  ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIE 219
            + + L  ++ +   F  ++     P  T F  + M   R  +  Q  + L  EM+     
Sbjct: 830  LYSKLGSYRNAALVFKGMQEIGCSPDATTFNTLIMLYSR-NQMVQEAQALLREMIKTGNA 888

Query: 220  LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
             +  TY+T+I+   R   +++A   F+ + +TG  PD   Y+ +++VY K+G+  ++  +
Sbjct: 889  PNISTYTTLISAYGRLQAYEDAELVFKSIAETGCKPDATAYNVMINVYRKAGEHRKIEEI 948

Query: 280  YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
             E+    G++P      +L   +G+ G       VL+ +  +G+ P+ + Y +++ +   
Sbjct: 949  IEQMKVDGFEPSLTTIHMLMDSYGKGGATGKAEEVLETLPEIGMSPDAIHYTSIINSHLN 1008

Query: 340  AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
                  A     +M ++ + P   T+T  +        +  AL L + + E      F L
Sbjct: 1009 NKDYLSAVIWLRKMTDACVRPTHVTITCFVGAASVCERSSHALMLLKALSE----AGFSL 1064

Query: 400  YNTLLNMCADIGLVEEAERLFEDMKLS 426
               L+  C    +V++ + +F+ ++ S
Sbjct: 1065 PLRLMTECTP-KVVQDMQDIFDQLQES 1090



 Score = 50.1 bits (118), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 50/277 (18%), Positives = 114/277 (41%), Gaps = 1/277 (0%)

Query: 260 YSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMK 319
           Y  +  + AK+G+  E           G         VL   +  +G  D       +M 
Sbjct: 544 YKRLAVMLAKAGRFSEAEEEMRTSQTYGQVQVSDFLKVLVASYDRAGMQDEALARFLDMT 603

Query: 320 SLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAK 379
           + G++ +  V  T +    + G   +A  L  + + +    D     A+I  YGK +  +
Sbjct: 604 TEGLEMDAEVLQTAVMCYCRKGFAFVAHELLIDCLHAFDVKDSAMHVAIIASYGKLKLWQ 663

Query: 380 DALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAM 439
           +A  ++  ++++ +  +   Y+ LL+  A+ G  E A R  ++M ++   +P+      +
Sbjct: 664 NAEIVFRDLQQHGFAGNTSAYSALLSAYAETGNFERATRALDNM-VAAGLQPNATCANYV 722

Query: 440 LNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGV 499
           L  +G  G      E F+ + E+G++ N      +     +   +++   ++    + G 
Sbjct: 723 LEAFGRAGKAKEISEFFQRLPEMGISPNSRTFVVIFHAFSRNGNLEEARSMYRQMKEAGF 782

Query: 500 KPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKL 536
            P  ++   LL++ S      D  +++  +++A  +L
Sbjct: 783 SPSIQVFKALLALYSRETVEIDAEELVKDIKKAGLEL 819


>gi|302817236|ref|XP_002990294.1| hypothetical protein SELMODRAFT_131439 [Selaginella moellendorffii]
 gi|300141856|gb|EFJ08563.1| hypothetical protein SELMODRAFT_131439 [Selaginella moellendorffii]
          Length = 1139

 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 81/333 (24%), Positives = 168/333 (50%), Gaps = 1/333 (0%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           W+++  FF W+K Q  +    I Y++ +K     +Q  L E    EM+  +++ D + +S
Sbjct: 252 WKEAQEFFAWMKLQLSYIPSVIVYSMLLKVYGRDKQIGLAEAAFQEMLDQKLDPDEVAFS 311

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T+I       +FDE +  +E M   G++P  VTY+ +L    K+ ++ +   L+E  V  
Sbjct: 312 TMILNYANAEMFDEMLTMYEAMMSRGIVPSSVTYTTMLIHLNKAERLADAALLWEDLVEE 371

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
             +  P+A++++  ++ + G ++    V + M   G  P+ ++YN +L  +GK G+   A
Sbjct: 372 SVELSPLAYALMITIYRKLGRFEEALEVFEAMLGAGYYPDSLIYNMVLHMLGKLGRYDEA 431

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
             +F  M    L   + +   ++ I  KA   + A  ++  M+  + P+D ++Y +++++
Sbjct: 432 VDVFTAMQRQELCTSKYSYATMLHICEKADKFELAASIFSDMQMKRCPVDEVVYTSVISI 491

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GL +EAE+LF++M        D  +++ M N+    G  + A+++ EE+   G+ +
Sbjct: 492 YGKAGLYDEAEKLFQEMN-ELRLLVDVKTFSVMANVRLKAGKYNEAVQVMEELLAKGLNL 550

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGV 499
           + M    L+ C  KA  ++   + F   ++ G+
Sbjct: 551 DDMAWKTLLHCYVKAGNVERATKTFKTLVESGI 583



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 89/377 (23%), Positives = 165/377 (43%), Gaps = 45/377 (11%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERM-YKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYE 281
           +T+  + T  K    + EA E+F  M  +   +P  + YS +L VY +  ++    + ++
Sbjct: 237 LTFRELCTVLKWQQGWKEAQEFFAWMKLQLSYIPSVIVYSMLLKVYGRDKQIGLAEAAFQ 296

Query: 282 RGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG 341
             +     PD +AFS +   +  +  +D +  + + M S G+ P+ V Y T+L  + KA 
Sbjct: 297 EMLDQKLDPDEVAFSTMILNYANAEMFDEMLTMYEAMMSRGIVPSSVTYTTMLIHLNKAE 356

Query: 342 KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYN 401
           +   A  L++++VE  +         +I IY K    ++ALE++E M    +  D ++YN
Sbjct: 357 RLADAALLWEDLVEESVELSPLAYALMITIYRKLGRFEEALEVFEAMLGAGYYPDSLIYN 416

Query: 402 TLLNMCADIGLVEEAERLFEDMKLSDYC--------------KPDNYS------------ 435
            +L+M   +G  +EA  +F  M+  + C              K D +             
Sbjct: 417 MVLHMLGKLGRYDEAVDVFTAMQRQELCTSKYSYATMLHICEKADKFELAASIFSDMQMK 476

Query: 436 --------YTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
                   YT++++IYG  G  D A +LF+EM+EL + ++V   + +     KA + ++ 
Sbjct: 477 RCPVDEVVYTSVISIYGKAGLYDEAEKLFQEMNELRLLVDVKTFSVMANVRLKAGKYNEA 536

Query: 488 VRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANP----------KLV 537
           V+V    + +G+  DD     LL         E   K    L ++             L 
Sbjct: 537 VQVMEELLAKGLNLDDMAWKTLLHCYVKAGNVERATKTFKTLVESGIADLMAYNDVLSLY 596

Query: 538 AFLNLIEDNSTGFENIK 554
           A  +++ED    F+ +K
Sbjct: 597 AEFDMLEDAKLLFQQLK 613



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 116/239 (48%), Gaps = 7/239 (2%)

Query: 223  ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
            + Y+TII    R     +AI+ +  +   GL P   TY  ++ V+AKSG+  +   +++ 
Sbjct: 862  VAYNTIIKADLRPGRLKKAIDTYSSLTNLGLRPSLQTYDTMISVFAKSGRTRDAEKMFKD 921

Query: 283  GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
              ++G++PD   +S +   + +SG Y+    + + MK  G++P+ V YN L++A  +AG+
Sbjct: 922  LKSAGFQPDEKVYSQMMNCYAKSGMYEHAADLFEAMKLRGLRPHEVSYNNLIDAYARAGQ 981

Query: 343  PGLARSLFDEMVESGLTPDEKTLTALIKIY---GKARWAKDALELWERMRENKWPMDFIL 399
               A  L  EM ++G  P   T   LI  Y   GK   A++AL   ERM+          
Sbjct: 982  FAKAEQLLVEMAKAGCPPSSVTFLLLISAYAHRGKCNEAENAL---ERMQTAAIRPTVRH 1038

Query: 400  YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458
            YN ++   +   L  +A   +  M+ S   +PD  S   M+ I   G   +  + L+++
Sbjct: 1039 YNEVMLAFSRARLPRQAMESYLKMERSG-IQPDVVSSRTMIRILLEGSMFEEGLSLYKK 1096



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 112/247 (45%), Gaps = 33/247 (13%)

Query: 217 EIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV 276
           E+  +N  YS+++     CN  +EA    E+M + GL  D V  S +L+ Y+K+G+    
Sbjct: 783 ELPRNNFVYSSMVGALINCNQLEEAAGLVEKMRQIGLKCDSVLVSILLNAYSKAGE---- 838

Query: 277 LSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA 336
                                  K+F  SG +    Y   +        ++V YNT+++A
Sbjct: 839 ----------------------QKIFSFSGRWYPAGYCCLQ------HDHIVAYNTIIKA 870

Query: 337 MGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMD 396
             + G+   A   +  +   GL P  +T   +I ++ K+   +DA ++++ ++   +  D
Sbjct: 871 DLRPGRLKKAIDTYSSLTNLGLRPSLQTYDTMISVFAKSGRTRDAEKMFKDLKSAGFQPD 930

Query: 397 FILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELF 456
             +Y+ ++N  A  G+ E A  LFE MKL    +P   SY  +++ Y   G    A +L 
Sbjct: 931 EKVYSQMMNCYAKSGMYEHAADLFEAMKLRG-LRPHEVSYNNLIDAYARAGQFAKAEQLL 989

Query: 457 EEMSELG 463
            EM++ G
Sbjct: 990 VEMAKAG 996



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/312 (24%), Positives = 137/312 (43%), Gaps = 15/312 (4%)

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           P++ + Y   +        +   E+L  EM    + +D  T+S +     +   ++EA++
Sbjct: 479 PVDEVVYTSVISIYGKAGLYDEAEKLFQEMNELRLLVDVKTFSVMANVRLKAGKYNEAVQ 538

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
             E +   GL  D++ +  +L  Y K+G VE     ++  V SG   D +A++ +  ++ 
Sbjct: 539 VMEELLAKGLNLDDMAWKTLLHCYVKAGNVERATKTFKTLVESGI-ADLMAYNDVLSLYA 597

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
           E    +  + + Q++KS  +QP+ V + T+++    A     A  +  +M E G TPD  
Sbjct: 598 EFDMLEDAKLLFQQLKSSSIQPDQVWFGTMVKLYCNANMVAAAEEVLRQMREKGFTPDHI 657

Query: 364 TLTALIKIYGKARWAKDALELWE-RMRENKWPMDFILYNTLLNMCADIGLVEEA----ER 418
           T   LI  YG+A   ++A  L E   +E++     I   + + +C    L ++A     R
Sbjct: 658 TQGILINAYGEANRIEEAAGLLEASAKEDESEAAAI---SRIYLCLKFRLFDKATLLLHR 714

Query: 419 LFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL 478
           + E   L      D+ +Y  +   +   G V  A  L   M + G  +       LI   
Sbjct: 715 VLESFTL------DSAAYNQLTINFLKAGQVLPAEMLHSRMQDKGFDVEDSTLGHLIAAY 768

Query: 479 GKARRIDDLVRV 490
           GKA R + L R+
Sbjct: 769 GKAGRYEVLTRL 780



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 90/181 (49%)

Query: 207  EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
            E++  ++ S   + D   YS ++ C  +  +++ A + FE M   GL P EV+Y+ ++D 
Sbjct: 916  EKMFKDLKSAGFQPDEKVYSQMMNCYAKSGMYEHAADLFEAMKLRGLRPHEVSYNNLIDA 975

Query: 267  YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
            YA++G+  +   L      +G  P  + F +L   +   G  +     L+ M++  ++P 
Sbjct: 976  YARAGQFAKAEQLLVEMAKAGCPPSSVTFLLLISAYAHRGKCNEAENALERMQTAAIRPT 1035

Query: 327  LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
            +  YN ++ A  +A  P  A   + +M  SG+ PD  +   +I+I  +    ++ L L++
Sbjct: 1036 VRHYNEVMLAFSRARLPRQAMESYLKMERSGIQPDVVSSRTMIRILLEGSMFEEGLSLYK 1095

Query: 387  R 387
            +
Sbjct: 1096 K 1096



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 83/405 (20%), Positives = 168/405 (41%), Gaps = 66/405 (16%)

Query: 202 QFQLIEQ---LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEV 258
           +F ++E    L  ++ S+ I+ D + + T++      N+   A E   +M + G  PD +
Sbjct: 598 EFDMLEDAKLLFQQLKSSSIQPDQVWFGTMVKLYCNANMVAAAEEVLRQMREKGFTPDHI 657

Query: 259 TYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEM 318
           T   +++ Y ++ ++EE   L E    +  K D    + + ++      Y  +++ L + 
Sbjct: 658 TQGILINAYGEANRIEEAAGLLE----ASAKEDESEAAAISRI------YLCLKFRLFDK 707

Query: 319 KSLGVQPNL-------VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371
            +L +   L         YN L     KAG+   A  L   M + G   ++ TL  LI  
Sbjct: 708 ATLLLHRVLESFTLDSAAYNQLTINFLKAGQVLPAEMLHSRMQDKGFDVEDSTLGHLIAA 767

Query: 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK------- 424
           YGKA       E+  R++  + P +  +Y++++    +   +EEA  L E M+       
Sbjct: 768 YGKA----GRYEVLTRLKP-ELPRNNFVYSSMVGALINCNQLEEAAGLVEKMRQIGLKCD 822

Query: 425 -------LSDYCK--------------PDNY---------SYTAMLNIYGSGGNVDNAIE 454
                  L+ Y K              P  Y         +Y  ++      G +  AI+
Sbjct: 823 SVLVSILLNAYSKAGEQKIFSFSGRWYPAGYCCLQHDHIVAYNTIIKADLRPGRLKKAID 882

Query: 455 LFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVS 514
            +  ++ LG+  ++     +I    K+ R  D  ++F      G +PD+++   +++  +
Sbjct: 883 TYSSLTNLGLRPSLQTYDTMISVFAKSGRTRDAEKMFKDLKSAGFQPDEKVYSQMMNCYA 942

Query: 515 ---LCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEE 556
              + E + D+ + +  L+   P  V++ NLI+  +   +  K E
Sbjct: 943 KSGMYEHAADLFEAMK-LRGLRPHEVSYNNLIDAYARAGQFAKAE 986



 Score = 40.0 bits (92), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 76/180 (42%), Gaps = 37/180 (20%)

Query: 173  FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVS----------------- 215
             F  +K + L P E  + N+     R G QF   EQL  EM                   
Sbjct: 953  LFEAMKLRGLRPHEVSYNNLIDAYARAG-QFAKAEQLLVEMAKAGCPPSSVTFLLLISAY 1011

Query: 216  ------NEIE--LDNIT----------YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDE 257
                  NE E  L+ +           Y+ ++    R  L  +A+E + +M ++G+ PD 
Sbjct: 1012 AHRGKCNEAENALERMQTAAIRPTVRHYNEVMLAFSRARLPRQAMESYLKMERSGIQPDV 1071

Query: 258  VTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQE 317
            V+   ++ +  +    EE LSLY++  A     D ++  ++ K++  +G +   +Y+L++
Sbjct: 1072 VSSRTMIRILLEGSMFEEGLSLYKKTEAK-LVSDSLSREMVAKLYQGAGKHFEAKYILRQ 1130


>gi|356547408|ref|XP_003542104.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Glycine max]
          Length = 631

 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 104/381 (27%), Positives = 168/381 (44%), Gaps = 41/381 (10%)

Query: 160 ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIE 219
           IL   K   ++   F  +K +   P  + + ++ +  ++ G   + + +L NEM S E+ 
Sbjct: 162 ILGKAKMVNRALSVFYQVKGRKCRPTASTYNSIILMLMQEGHH-EKVHELYNEMCS-EVH 219

Query: 220 L--DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL 277
              D +TYS +I+   + N  D AI  F+ M + GL P    Y+ ++ +Y K GKVEE L
Sbjct: 220 CFPDTVTYSALISAFAKLNRDDSAIRLFDEMKENGLQPTAKIYTTLMGIYFKVGKVEEAL 279

Query: 278 SL-----------------------------------YERGVASGWKPDPIAFSVLGKMF 302
            L                                   Y+  +  G KPD +  + L  + 
Sbjct: 280 GLVKEMRARRCLLTVFTYTELIRGLGKSGRVEDAYMTYKNMLKDGCKPDVVLMNNLINIL 339

Query: 303 GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP-GLARSLFDEMVESGLTPD 361
           G S        +  EMK L   PN+V YNT+++++ +A  P   A S F+ M + G+ P 
Sbjct: 340 GRSNHLRDAIKLFDEMKLLNCAPNVVTYNTIIKSLFEAKAPLSEASSWFERMKKDGIVPS 399

Query: 362 EKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFE 421
             T + LI  Y K    + AL L E M E  +P     Y +L+N        + A  LF+
Sbjct: 400 SFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINTLGVAKRYDVANELFQ 459

Query: 422 DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
           ++K +  C      Y  M+  +G  G ++ AI LF EM +LG   +V     L+  + +A
Sbjct: 460 ELKENCGCSSARV-YAVMIKHFGKCGRLNEAINLFNEMKKLGCTPDVYAYNALMTGMVRA 518

Query: 482 RRIDDLVRVFGVSIDRGVKPD 502
            R+D+   +F    + G  PD
Sbjct: 519 ERMDEAFSLFRTMEENGCTPD 539



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/263 (29%), Positives = 124/263 (47%), Gaps = 47/263 (17%)

Query: 223 ITYSTIITCAKRCNLFD------EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV 276
           +TY+TII      +LF+      EA  WFERM K G++P   TYS ++D Y K+ +VE+ 
Sbjct: 365 VTYNTIIK-----SLFEAKAPLSEASSWFERMKKDGIVPSSFTYSILIDGYCKTNRVEKA 419

Query: 277 LSLYERGVASGWKPDPIAF-----------------------------------SVLGKM 301
           L L E     G+ P P A+                                   +V+ K 
Sbjct: 420 LLLLEEMDEKGFPPCPAAYCSLINTLGVAKRYDVANELFQELKENCGCSSARVYAVMIKH 479

Query: 302 FGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD 361
           FG+ G  +    +  EMK LG  P++  YN L+  M +A +   A SLF  M E+G TPD
Sbjct: 480 FGKCGRLNEAINLFNEMKKLGCTPDVYAYNALMTGMVRAERMDEAFSLFRTMEENGCTPD 539

Query: 362 EKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFE 421
             +   ++    +    K ALE++ +M+ +    D + +NT+L   +  GL EEA +L +
Sbjct: 540 INSHNIILNGLARTGGPKGALEMFTKMKNSTIKPDVVSFNTILGCLSRAGLFEEAAKLMQ 599

Query: 422 DMKLSDYCKPDNYSYTAMLNIYG 444
           +M    + + D  +Y+++L   G
Sbjct: 600 EMSSKGF-QYDLITYSSILEAVG 621



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 83/350 (23%), Positives = 143/350 (40%), Gaps = 38/350 (10%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           FF W   +  F  ++  Y   ++ L   R F  + +   +MV     +     S I+   
Sbjct: 104 FFKWAGKRRNFEHDSTTYMALIRCLDEHRMFGEVWKTIQDMVKGSCAMAPAELSEIVRIL 163

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY-ERGVASGWKPD 291
            +  + + A+  F ++      P   TY++I+ +  + G  E+V  LY E        PD
Sbjct: 164 GKAKMVNRALSVFYQVKGRKCRPTASTYNSIILMLMQEGHHEKVHELYNEMCSEVHCFPD 223

Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLL----------------- 334
            + +S L   F +    D    +  EMK  G+QP   +Y TL+                 
Sbjct: 224 TVTYSALISAFAKLNRDDSAIRLFDEMKENGLQPTAKIYTTLMGIYFKVGKVEEALGLVK 283

Query: 335 ------------------EAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
                               +GK+G+   A   +  M++ G  PD   +  LI I G++ 
Sbjct: 284 EMRARRCLLTVFTYTELIRGLGKSGRVEDAYMTYKNMLKDGCKPDVVLMNNLINILGRSN 343

Query: 377 WAKDALELWERMRENKWPMDFILYNTLLNMCADIGL-VEEAERLFEDMKLSDYCKPDNYS 435
             +DA++L++ M+      + + YNT++    +    + EA   FE MK  D   P +++
Sbjct: 344 HLRDAIKLFDEMKLLNCAPNVVTYNTIIKSLFEAKAPLSEASSWFERMK-KDGIVPSSFT 402

Query: 436 YTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
           Y+ +++ Y     V+ A+ L EEM E G          LI  LG A+R D
Sbjct: 403 YSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINTLGVAKRYD 452



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 90/193 (46%)

Query: 183 FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
           FP     Y   + +L   +++ +  +L  E+  N        Y+ +I    +C   +EAI
Sbjct: 431 FPPCPAAYCSLINTLGVAKRYDVANELFQELKENCGCSSARVYAVMIKHFGKCGRLNEAI 490

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
             F  M K G  PD   Y+A++    ++ +++E  SL+     +G  PD  + +++    
Sbjct: 491 NLFNEMKKLGCTPDVYAYNALMTGMVRAERMDEAFSLFRTMEENGCTPDINSHNIILNGL 550

Query: 303 GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
             +G   G   +  +MK+  ++P++V +NT+L  + +AG    A  L  EM   G   D 
Sbjct: 551 ARTGGPKGALEMFTKMKNSTIKPDVVSFNTILGCLSRAGLFEEAAKLMQEMSSKGFQYDL 610

Query: 363 KTLTALIKIYGKA 375
            T +++++  GK 
Sbjct: 611 ITYSSILEAVGKV 623



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 65/292 (22%), Positives = 115/292 (39%), Gaps = 39/292 (13%)

Query: 256 DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVL 315
           D  TY A++    +     EV    +  V       P   S + ++ G++   +    V 
Sbjct: 117 DSTTYMALIRCLDEHRMFGEVWKTIQDMVKGSCAMAPAELSEIVRILGKAKMVNRALSVF 176

Query: 316 QEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMV-ESGLTPDEKTLTALIKIYGK 374
            ++K    +P    YN+++  + + G       L++EM  E    PD  T +ALI  + K
Sbjct: 177 YQVKGRKCRPTASTYNSIILMLMQEGHHEKVHELYNEMCSEVHCFPDTVTYSALISAFAK 236

Query: 375 ARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNY 434
                 A+                                   RLF++MK  +  +P   
Sbjct: 237 LNRDDSAI-----------------------------------RLFDEMK-ENGLQPTAK 260

Query: 435 SYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVS 494
            YT ++ IY   G V+ A+ L +EM      + V   T LI+ LGK+ R++D    +   
Sbjct: 261 IYTTLMGIYFKVGKVEEALGLVKEMRARRCLLTVFTYTELIRGLGKSGRVEDAYMTYKNM 320

Query: 495 IDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAFLNLIE 544
           +  G KPD  L   L++++       D  K+   ++  N  P +V +  +I+
Sbjct: 321 LKDGCKPDVVLMNNLINILGRSNHLRDAIKLFDEMKLLNCAPNVVTYNTIIK 372



 Score = 42.4 bits (98), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 58/135 (42%), Gaps = 1/135 (0%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            FN +K     P +   YN  M  +    +      L   M  N    D  +++ I+   
Sbjct: 492 LFNEMKKLGCTP-DVYAYNALMTGMVRAERMDEAFSLFRTMEENGCTPDINSHNIILNGL 550

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            R      A+E F +M  + + PD V+++ IL   +++G  EE   L +   + G++ D 
Sbjct: 551 ARTGGPKGALEMFTKMKNSTIKPDVVSFNTILGCLSRAGLFEEAAKLMQEMSSKGFQYDL 610

Query: 293 IAFSVLGKMFGESGD 307
           I +S + +  G+  D
Sbjct: 611 ITYSSILEAVGKVDD 625


>gi|449432854|ref|XP_004134213.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Cucumis sativus]
          Length = 904

 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 90/327 (27%), Positives = 163/327 (49%), Gaps = 9/327 (2%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           IT + ++    +    D+A   FE +      PD VTY ++++   + G+V+E   LYE+
Sbjct: 445 ITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQ 504

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
            + +   P+ + ++ L + F + G  +    +  EM  LG  P+L++ NT ++ + KAG+
Sbjct: 505 MLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGE 564

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
               R+LF E+   G  PD ++ T LI    KA +A +A EL+  M+E    +D   YNT
Sbjct: 565 IEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNT 624

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
           +++     G V +A +L E+MK   + +P   +Y ++++       +D A  LFEE    
Sbjct: 625 VIDGFCKSGKVNKAYQLLEEMKTKGH-EPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSK 683

Query: 463 GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDV 522
           G+ +NV+  + LI   GK  RID+   +    + +G+ P+     CLL  +     +E++
Sbjct: 684 GIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALV---KAEEI 740

Query: 523 GKVITCLQ-----QANPKLVAFLNLIE 544
            + + C Q     +  P  + +  LI 
Sbjct: 741 SEALVCFQSMKDLKCTPNYITYSILIH 767



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 102/370 (27%), Positives = 169/370 (45%), Gaps = 10/370 (2%)

Query: 145 ITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQ 204
           + E+   P  E  + +L  LK    +  +F W +           YN  +  +   R+F 
Sbjct: 88  LAELDLNPNPELVIGVLRRLKDVNNAVNYFRWAERLTDRAHCREAYNSLLMVMARTRKFN 147

Query: 205 LIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAIL 264
            +EQ+  EM        N T   I+    +     EA  + + M K    P    Y+ ++
Sbjct: 148 CLEQILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREAFTFIQTMRKLKFRPAFSAYTNLI 207

Query: 265 DVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQ 324
              + S   + +L+L+++    G+  +   F+ L ++F   G  D    +L EMKS  ++
Sbjct: 208 GALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLE 267

Query: 325 PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384
           P++V+YN  ++  GKAGK  +A   F EM  +GL  D+ T T++I +  KA    +A+EL
Sbjct: 268 PDVVLYNVCIDCFGKAGKVDMAWKFFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVEL 327

Query: 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYG 444
           +E M +NK       YNT++      G  E+A  L E  +    C P   SY  +L+  G
Sbjct: 328 FEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKG-CIPSVVSYNCILSCLG 386

Query: 445 SGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD-- 502
             G VD A++ FEEM +  +  N+     +I  L KA +++  + V     D G+ P+  
Sbjct: 387 RKGQVDEALKKFEEMKKDAIP-NLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVI 445

Query: 503 ------DRLC 506
                 DRLC
Sbjct: 446 TVNIMVDRLC 455



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 148/311 (47%), Gaps = 1/311 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D  +Y+ +I    +     EA E F  M + G + D   Y+ ++D + KSGKV +   L 
Sbjct: 583 DARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLL 642

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
           E     G +P  + +  +     +    D    + +E KS G++ N+V+Y++L++  GK 
Sbjct: 643 EEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKV 702

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G+   A  + +E+++ GLTP+  T   L+    KA    +AL  ++ M++ K   ++I Y
Sbjct: 703 GRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITY 762

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           + L++    I    +A   +++M+   + KP+ ++YT M++     GN+  A  LFE+  
Sbjct: 763 SILIHGLCKIRKFNKAFVFWQEMQKQGF-KPNVFTYTTMISGLAKAGNIVEADTLFEKFK 821

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSE 520
           E G   +      +I+ L  A R  D  R+F  +  +G     + C  LL  +   E  E
Sbjct: 822 EKGGVADSAIYNAIIEGLSNANRASDAYRLFEEARLKGCSIYTKTCVVLLDSLHKAECIE 881

Query: 521 DVGKVITCLQQ 531
               V   L++
Sbjct: 882 QAAIVGAVLRE 892



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 135/282 (47%), Gaps = 1/282 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D +TY ++I    R    DEA + +E+M     +P+ V Y++++  + K G+ E+   +Y
Sbjct: 478 DAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIY 537

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
              +  G  PD +  +       ++G+ +  R + QE+K+LG  P+   Y  L+  + KA
Sbjct: 538 NEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKA 597

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G    A  LF  M E G   D +    +I  + K+     A +L E M+        + Y
Sbjct: 598 GFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTY 657

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
            ++++  A I  ++EA  LFE+ K S   + +   Y+++++ +G  G +D A  + EE+ 
Sbjct: 658 GSVIDGLAKIDRLDEAYMLFEEAK-SKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELM 716

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           + G+  NV    CL+  L KA  I + +  F    D    P+
Sbjct: 717 QKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPN 758



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 127/274 (46%), Gaps = 1/274 (0%)

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
           LD   Y+T+I    +    ++A +  E M   G  P  VTY +++D  AK  +++E   L
Sbjct: 617 LDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYML 676

Query: 280 YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
           +E   + G + + + +S L   FG+ G  D    +++E+   G+ PN+  +N LL+A+ K
Sbjct: 677 FEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVK 736

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
           A +   A   F  M +   TP+  T + LI    K R    A   W+ M++  +  +   
Sbjct: 737 AEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFT 796

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           Y T+++  A  G + EA+ LFE  K       D+  Y A++    +     +A  LFEE 
Sbjct: 797 YTTMISGLAKAGNIVEADTLFEKFKEKGGV-ADSAIYNAIIEGLSNANRASDAYRLFEEA 855

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGV 493
              G +I    C  L+  L KA  I+    V  V
Sbjct: 856 RLKGCSIYTKTCVVLLDSLHKAECIEQAAIVGAV 889



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 133/293 (45%), Gaps = 12/293 (4%)

Query: 140 AFLRAITEIPHQPTRENALLILNSL---KFWQKSYFFFNWIKSQNLFPMETIFYNVTM-- 194
           A  + I  +   P   +  ++++ L    F  ++Y  F  +K Q    ++T  YN  +  
Sbjct: 570 ALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCV-LDTRAYNTVIDG 628

Query: 195 --KSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTG 252
             KS +  + +QL+E    EM +   E   +TY ++I    + +  DEA   FE     G
Sbjct: 629 FCKSGKVNKAYQLLE----EMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKG 684

Query: 253 LMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIR 312
           +  + V YS+++D + K G+++E   + E  +  G  P+   ++ L     ++ +     
Sbjct: 685 IELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEAL 744

Query: 313 YVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIY 372
              Q MK L   PN + Y+ L+  + K  K   A   + EM + G  P+  T T +I   
Sbjct: 745 VCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGL 804

Query: 373 GKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
            KA    +A  L+E+ +E     D  +YN ++   ++     +A RLFE+ +L
Sbjct: 805 AKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFEEARL 857


>gi|302801820|ref|XP_002982666.1| hypothetical protein SELMODRAFT_421954 [Selaginella moellendorffii]
 gi|300149765|gb|EFJ16419.1| hypothetical protein SELMODRAFT_421954 [Selaginella moellendorffii]
          Length = 796

 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 123/607 (20%), Positives = 244/607 (40%), Gaps = 79/607 (13%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           FF WI+ Q  +   T  +++ + +   G+ FQ ++++  ++ +++  +  + Y+T+I   
Sbjct: 121 FFQWIRRQKWYVPSTYSFSILLNTYGRGKDFQAVQRVLADLKADKCPMTTVAYNTLIKVY 180

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            + +  DEA  +++ M  +  +PD  T++ ++ +Y+ +G+ E+VL +Y+     G   D 
Sbjct: 181 GKAHKLDEAWGYYKEMQDSRCVPDIFTFNTLMSLYSYAGQSEKVLEVYDEMQKIGCSLDR 240

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           + + V+    G+ G  D    + + MK+ G QPN V Y+ L+    K+G+  +    F+E
Sbjct: 241 VGYEVVVPHAGKVGRLDLACMLFERMKAEGHQPNAVAYSALIAGQLKSGRLEIGTKYFEE 300

Query: 353 M------------------------VESGL-----------TPDEKTLTALIKIYGKARW 377
           M                        +E+GL            P+     AL+  + KA  
Sbjct: 301 MRSLEIRPLLGTFASLIEAYCKSGRLETGLKFFKDMEAFNYKPNLCIYAALVDAHAKAGM 360

Query: 378 AKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYT 437
              ALE +ERMR     +  +++  L+   A  G  E A RL+ +M+     +P +++  
Sbjct: 361 LDAALEFYERMRGVGLWLPPLIFAVLIEQHAQAGKAETAVRLYREMRGVG-LRPSHFTCR 419

Query: 438 AMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDR 497
            ++     GG  D+   +  EM E+G+ +       +++ L   +RI D   +F      
Sbjct: 420 IVVGAVAKGGKYDDVERILFEMQEMGLNVADAVNDSIVK-LVDDKRISDAWELFLKVTGH 478

Query: 498 GVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPK---------------------- 535
           G  P   LC  +L     C   E   ++++ +Q+                          
Sbjct: 479 GFTPHVSLCREILHGFLSCGDMEHARQMLSFMQRPGSAVDLRTYCMLLEFFLRGSRLEHE 538

Query: 536 --LVAFLNLIEDNSTGF-----------------ENIKEEFRNVIKDTEVDARRPFCNCL 576
             +++F+   +  +  F                 + IK  +  +  + +   RR   N L
Sbjct: 539 EVIISFMRETKHPAHSFLCGLMGSSKHRKGQSLADYIKSFYSELEAEVDFKTRRYLTNVL 598

Query: 577 IDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLD-EWSLDVRSLSVGAAQTALEEWMWT 635
           ++         +A     +     +YP       D  W L VRS+S+GAA   +   +  
Sbjct: 599 LNYLVVMGQERKARSFWKVVYQIHMYPNSIVLQGDLTWCLKVRSMSIGAALIGVLCTLEK 658

Query: 636 LAKIVLREEVLPQLFLAETGTGTHKFSQGLATAFASHVNKLAAPFRQSEGKAGCFVATRE 695
             + +L+   +PQ     TG+     +  +  A  + +  L +PF   +   G F     
Sbjct: 659 FRERILKRRFVPQRIKILTGSKADSDAIAVRQAIEAMMKPLDSPFIFQDEDLGSFWCRGS 718

Query: 696 DLVSWVQ 702
             V W +
Sbjct: 719 FFVKWFR 725



 Score = 41.6 bits (96), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 27/116 (23%), Positives = 50/116 (43%)

Query: 416 AERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLI 475
           A   F+ ++   +  P  YS++ +LN YG G +      +  ++      +  +    LI
Sbjct: 118 ANGFFQWIRRQKWYVPSTYSFSILLNTYGRGKDFQAVQRVLADLKADKCPMTTVAYNTLI 177

Query: 476 QCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ 531
           +  GKA ++D+    +    D    PD      L+S+ S    SE V +V   +Q+
Sbjct: 178 KVYGKAHKLDEAWGYYKEMQDSRCVPDIFTFNTLMSLYSYAGQSEKVLEVYDEMQK 233


>gi|302833221|ref|XP_002948174.1| hypothetical protein VOLCADRAFT_116752 [Volvox carteri f.
           nagariensis]
 gi|300266394|gb|EFJ50581.1| hypothetical protein VOLCADRAFT_116752 [Volvox carteri f.
           nagariensis]
          Length = 1001

 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 92/322 (28%), Positives = 153/322 (47%), Gaps = 6/322 (1%)

Query: 186 ETIFYNVTMKSLRFG---RQFQLIEQL--ANEMVSNEIELDNITYSTIITCAKRCNLFDE 240
           E IF  +     R G   R  +L + L  ANE        D  +Y+  I+        D 
Sbjct: 103 EVIFRALHHDLSRLGKDRRAMELFDWLRSANERSPLRALCDVYSYTATISLCIHGQDVDR 162

Query: 241 AIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGK 300
           A+E  + M    +  +  TY+A+++V  K GK+   L +Y    A    P+ + ++ L  
Sbjct: 163 ALELMQEMRSRNIERNVHTYTALMNVCIKCGKLPLALDIYNSMRAVNCMPNVVTYNTLVD 222

Query: 301 MFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTP 360
           ++G+ G ++   +VL  MK  GV+P L  YNTL+ A     +P  A +++  ++  G TP
Sbjct: 223 VYGKLGQWERAIHVLDVMKHEGVEPVLRTYNTLIIACNMCNQPREALAVYQRLLSDGFTP 282

Query: 361 DEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLF 420
           +  T  ALI  YGK      ALE+++ M         I Y++L++ C   G  E A R+F
Sbjct: 283 NSTTYNALISAYGKTTQLGKALEVYQEMLRQNMDRSVITYSSLISACEKAGQWETALRIF 342

Query: 421 EDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK 480
            +M+  D C P+  +Y +++     GG  + A E+FE+M+  G   +V+  T LI    +
Sbjct: 343 NEMQ-QDKCVPNTVTYNSLVTACAQGGQWEKAAEVFEQMNAHGCTPDVVTYTALISAYER 401

Query: 481 ARRIDDLVRVFGVSIDRGVKPD 502
             +    ++ F     +G KPD
Sbjct: 402 GGQWQKALQAFHKMCVQGCKPD 423



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/348 (26%), Positives = 157/348 (45%), Gaps = 18/348 (5%)

Query: 121 VRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQ 180
           V ++ +  +KL   +   E   RA+    H          L+ L   +++   F+W++S 
Sbjct: 85  VEEMAVIIQKLQPNEPLPEVIFRAL----HHD--------LSRLGKDRRAMELFDWLRSA 132

Query: 181 N-LFPMETIF----YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRC 235
           N   P+  +     Y  T+     G+      +L  EM S  IE +  TY+ ++    +C
Sbjct: 133 NERSPLRALCDVYSYTATISLCIHGQDVDRALELMQEMRSRNIERNVHTYTALMNVCIKC 192

Query: 236 NLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAF 295
                A++ +  M     MP+ VTY+ ++DVY K G+ E  + + +     G +P    +
Sbjct: 193 GKLPLALDIYNSMRAVNCMPNVVTYNTLVDVYGKLGQWERAIHVLDVMKHEGVEPVLRTY 252

Query: 296 SVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVE 355
           + L               V Q + S G  PN   YN L+ A GK  + G A  ++ EM+ 
Sbjct: 253 NTLIIACNMCNQPREALAVYQRLLSDGFTPNSTTYNALISAYGKTTQLGKALEVYQEMLR 312

Query: 356 SGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEE 415
             +     T ++LI    KA   + AL ++  M+++K   + + YN+L+  CA  G  E+
Sbjct: 313 QNMDRSVITYSSLISACEKAGQWETALRIFNEMQQDKCVPNTVTYNSLVTACAQGGQWEK 372

Query: 416 AERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           A  +FE M  +  C PD  +YTA+++ Y  GG    A++ F +M   G
Sbjct: 373 AAEVFEQMN-AHGCTPDVVTYTALISAYERGGQWQKALQAFHKMCVQG 419



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 119/245 (48%), Gaps = 9/245 (3%)

Query: 173 FFNWIKSQNLFPMETIFYN----VTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
            +N +++ N  P   + YN    V  K  ++ R   +++ + +E V   +     TY+T+
Sbjct: 201 IYNSMRAVNCMP-NVVTYNTLVDVYGKLGQWERAIHVLDVMKHEGVEPVLR----TYNTL 255

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
           I     CN   EA+  ++R+   G  P+  TY+A++  Y K+ ++ + L +Y+  +    
Sbjct: 256 IIACNMCNQPREALAVYQRLLSDGFTPNSTTYNALISAYGKTTQLGKALEVYQEMLRQNM 315

Query: 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348
               I +S L     ++G ++    +  EM+     PN V YN+L+ A  + G+   A  
Sbjct: 316 DRSVITYSSLISACEKAGQWETALRIFNEMQQDKCVPNTVTYNSLVTACAQGGQWEKAAE 375

Query: 349 LFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCA 408
           +F++M   G TPD  T TALI  Y +    + AL+ + +M       D I+YN +++   
Sbjct: 376 VFEQMNAHGCTPDVVTYTALISAYERGGQWQKALQAFHKMCVQGCKPDAIVYNAIIDTLW 435

Query: 409 DIGLV 413
           + G++
Sbjct: 436 ETGII 440



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 64/298 (21%), Positives = 120/298 (40%), Gaps = 22/298 (7%)

Query: 323 VQPNL----VVYNTLLEAMGKAGKPGLARSLFDEMVESG-LTP-----DEKTLTALIKIY 372
           +QPN     V++  L   + + GK   A  LFD +  +   +P     D  + TA I + 
Sbjct: 95  LQPNEPLPEVIFRALHHDLSRLGKDRRAMELFDWLRSANERSPLRALCDVYSYTATISLC 154

Query: 373 GKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPD 432
              +    ALEL + MR      +   Y  L+N+C   G +  A  ++  M+  + C P+
Sbjct: 155 IHGQDVDRALELMQEMRSRNIERNVHTYTALMNVCIKCGKLPLALDIYNSMRAVN-CMPN 213

Query: 433 NYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFG 492
             +Y  ++++YG  G  + AI + + M   GV   +     LI       +  + + V+ 
Sbjct: 214 VVTYNTLVDVYGKLGQWERAIHVLDVMKHEGVEPVLRTYNTLIIACNMCNQPREALAVYQ 273

Query: 493 VSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ-----ANPKLVAFLNLIE--D 545
             +  G  P+      L+S       +  +GK +   Q+      +  ++ + +LI   +
Sbjct: 274 RLLSDGFTPNSTTYNALISAYG---KTTQLGKALEVYQEMLRQNMDRSVITYSSLISACE 330

Query: 546 NSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYP 603
            +  +E     F  + +D  V     + N L+  C      E+A E+      +G  P
Sbjct: 331 KAGQWETALRIFNEMQQDKCVPNTVTY-NSLVTACAQGGQWEKAAEVFEQMNAHGCTP 387


>gi|299471045|emb|CBN78905.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 755

 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 163/336 (48%), Gaps = 2/336 (0%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           W+++      ++SQ + P + I Y+  +K+   G Q++    L +EM    +  + I ++
Sbjct: 301 WKEAVEVLRQMESQGVTP-DVISYDAAIKACGGGGQWETSVDLLDEMAGRGVAPNTIHFN 359

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           + I    +   +++A+E    +   GL PD  ++++ +    KSG+ +E L L +   A 
Sbjct: 360 SAIVACGKGGQWEKAVELLREVTALGLTPDATSFNSAIAACTKSGRWKEALELLKEMPAK 419

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
             KPD I+++   +  G+ G ++    + ++M + G+ PN++  N  + A G+ G+    
Sbjct: 420 RLKPDAISYNSAIEACGKGGQWEMALELRRQMPTKGLTPNVISSNIAIRACGERGRWQEG 479

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
             L  +M   GLTP+  T  + IK  GK    + AL+L  +M+E     D I YN+ +  
Sbjct: 480 LELLRQMPAQGLTPNVITYNSAIKTCGKGGQWEKALDLLAKMKELAMTPDSITYNSAIAA 539

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
           C+  G  +EA  L  +M       PD  SYTA ++ YG  G  + A+EL  +M   G+  
Sbjct: 540 CSKRGRWKEAVALLREMP-GQGLTPDVISYTAAIDAYGKNGQWERAVELLRQMPTKGLTP 598

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           NV+    +I+  G+    +  + +     +  V PD
Sbjct: 599 NVITYNSVIKACGRGGEWEKALDLLKELKETAVAPD 634



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 156/336 (46%), Gaps = 1/336 (0%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           W+K+      I  Q         YN  +++   G Q+++   L  EM   E+  D I+Y+
Sbjct: 160 WEKALELLREIPEQEGVSPNVFCYNSAIEACGSGDQWEIAVSLLREMADREVVPDEISYN 219

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           + I    R   ++  I     M   GL PD +TY++++    K G+ +E LS+     A 
Sbjct: 220 SAIKACGRGGQWERVIGLLREMPSVGLTPDAITYNSVITGCGKEGQWKEALSVLTEMSAK 279

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G  P+ I++++  +  G SG +     VL++M+S GV P+++ Y+  ++A G  G+   +
Sbjct: 280 GLTPETISYNMAIRACGRSGRWKEAVEVLRQMESQGVTPDVISYDAAIKACGGGGQWETS 339

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
             L DEM   G+ P+     + I   GK    + A+EL   +       D   +N+ +  
Sbjct: 340 VDLLDEMAGRGVAPNTIHFNSAIVACGKGGQWEKAVELLREVTALGLTPDATSFNSAIAA 399

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
           C   G  +EA  L ++M  +   KPD  SY + +   G GG  + A+EL  +M   G+  
Sbjct: 400 CTKSGRWKEALELLKEMP-AKRLKPDAISYNSAIEACGKGGQWEMALELRRQMPTKGLTP 458

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           NV+     I+  G+  R  + + +      +G+ P+
Sbjct: 459 NVISSNIAIRACGERGRWQEGLELLRQMPAQGLTPN 494



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 89/363 (24%), Positives = 167/363 (46%), Gaps = 7/363 (1%)

Query: 141 FLRAITEI---PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSL 197
            LR +T +   P   +  +A+        W+++      + ++ L P + I YN  +++ 
Sbjct: 377 LLREVTALGLTPDATSFNSAIAACTKSGRWKEALELLKEMPAKRLKP-DAISYNSAIEAC 435

Query: 198 RFGRQFQLIEQLANEMVSNEIELDNITYSTII-TCAKRCNLFDEAIEWFERMYKTGLMPD 256
             G Q+++  +L  +M +  +  + I+ +  I  C +R   + E +E   +M   GL P+
Sbjct: 436 GKGGQWEMALELRRQMPTKGLTPNVISSNIAIRACGER-GRWQEGLELLRQMPAQGLTPN 494

Query: 257 EVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQ 316
            +TY++ +    K G+ E+ L L  +       PD I ++       + G +     +L+
Sbjct: 495 VITYNSAIKTCGKGGQWEKALDLLAKMKELAMTPDSITYNSAIAACSKRGRWKEAVALLR 554

Query: 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
           EM   G+ P+++ Y   ++A GK G+   A  L  +M   GLTP+  T  ++IK  G+  
Sbjct: 555 EMPGQGLTPDVISYTAAIDAYGKNGQWERAVELLRQMPTKGLTPNVITYNSVIKACGRGG 614

Query: 377 WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY 436
             + AL+L + ++E     D + YN  ++ C   G  EEA  L  +M  ++   PD  SY
Sbjct: 615 EWEKALDLLKELKETAVAPDLMSYNLAISACGKRGRWEEALDLLREMP-AEGLTPDVISY 673

Query: 437 TAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496
           T+ +    + G  + A+ L   M   GV+      +  I+  GK  R ++ V +      
Sbjct: 674 TSAIRACNAEGEWEKALGLLNLMGAHGVSPTATSYSLAIEACGKGGRREEAVCLVREMAQ 733

Query: 497 RGV 499
           RG+
Sbjct: 734 RGL 736



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 156/314 (49%), Gaps = 4/314 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           W+ +      + ++ L P   I  N+ +++     ++Q   +L  +M +  +  + ITY+
Sbjct: 441 WEMALELRRQMPTKGLTP-NVISSNIAIRACGERGRWQEGLELLRQMPAQGLTPNVITYN 499

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           + I    +   +++A++   +M +  + PD +TY++ +   +K G+ +E ++L       
Sbjct: 500 SAIKTCGKGGQWEKALDLLAKMKELAMTPDSITYNSAIAACSKRGRWKEAVALLREMPGQ 559

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G  PD I+++     +G++G ++    +L++M + G+ PN++ YN++++A G+ G+   A
Sbjct: 560 GLTPDVISYTAAIDAYGKNGQWERAVELLRQMPTKGLTPNVITYNSVIKACGRGGEWEKA 619

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGK-ARWAKDALELWERMRENKWPMDFILYNTLLN 405
             L  E+ E+ + PD  +    I   GK  RW ++AL+L   M       D I Y + + 
Sbjct: 620 LDLLKELKETAVAPDLMSYNLAISACGKRGRW-EEALDLLREMPAEGLTPDVISYTSAIR 678

Query: 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
            C   G  E+A  L   M  +    P   SY+  +   G GG  + A+ L  EM++ G++
Sbjct: 679 ACNAEGEWEKALGLLNLMG-AHGVSPTATSYSLAIEACGKGGRREEAVCLVREMAQRGLS 737

Query: 466 INVMGCTCLIQCLG 479
              +  + +++ LG
Sbjct: 738 HRNISNSLIVEALG 751



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 103/220 (46%), Gaps = 1/220 (0%)

Query: 140 AFLRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRF 199
           A ++ +   P   T  +A+   +    W+++      +  Q L P + I Y   + +   
Sbjct: 519 AKMKELAMTPDSITYNSAIAACSKRGRWKEAVALLREMPGQGLTP-DVISYTAAIDAYGK 577

Query: 200 GRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVT 259
             Q++   +L  +M +  +  + ITY+++I    R   +++A++  + + +T + PD ++
Sbjct: 578 NGQWERAVELLRQMPTKGLTPNVITYNSVIKACGRGGEWEKALDLLKELKETAVAPDLMS 637

Query: 260 YSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMK 319
           Y+  +    K G+ EE L L     A G  PD I+++   +     G+++    +L  M 
Sbjct: 638 YNLAISACGKRGRWEEALDLLREMPAEGLTPDVISYTSAIRACNAEGEWEKALGLLNLMG 697

Query: 320 SLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
           + GV P    Y+  +EA GK G+   A  L  EM + GL+
Sbjct: 698 AHGVSPTATSYSLAIEACGKGGRREEAVCLVREMAQRGLS 737



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 84/177 (47%), Gaps = 3/177 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           W+++      + ++ L P   I YN  +K+   G +++    L  E+    +  D ++Y+
Sbjct: 581 WERAVELLRQMPTKGLTP-NVITYNSVIKACGRGGEWEKALDLLKELKETAVAPDLMSYN 639

Query: 227 TIIT-CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVA 285
             I+ C KR   ++EA++    M   GL PD ++Y++ +      G+ E+ L L     A
Sbjct: 640 LAISACGKR-GRWEEALDLLREMPAEGLTPDVISYTSAIRACNAEGEWEKALGLLNLMGA 698

Query: 286 SGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
            G  P   ++S+  +  G+ G  +    +++EM   G+    +  + ++EA+G   K
Sbjct: 699 HGVSPTATSYSLAIEACGKGGRREEAVCLVREMAQRGLSHRNISNSLIVEALGDDAK 755



 Score = 49.3 bits (116), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 69/170 (40%), Gaps = 10/170 (5%)

Query: 346 ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKW-PMDFILYNTLL 404
           A  + DEM E G+       TA+     + +W K ALEL   + E +    +   YN+ +
Sbjct: 129 ALGILDEMKEGGVVCAHSYTTAITTCGRQGQWEK-ALELLREIPEQEGVSPNVFCYNSAI 187

Query: 405 NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
             C      E A  L  +M   +   PD  SY + +   G GG  +  I L  EM  +G+
Sbjct: 188 EACGSGDQWEIAVSLLREMADREVV-PDEISYNSAIKACGRGGQWERVIGLLREMPSVGL 246

Query: 465 AINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD-------RLCG 507
             + +    +I   GK  +  + + V      +G+ P+        R CG
Sbjct: 247 TPDAITYNSVITGCGKEGQWKEALSVLTEMSAKGLTPETISYNMAIRACG 296


>gi|449513353|ref|XP_004164304.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g06920-like [Cucumis sativus]
          Length = 904

 Score =  139 bits (349), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 90/327 (27%), Positives = 163/327 (49%), Gaps = 9/327 (2%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           IT + ++    +    D+A   FE +      PD VTY ++++   + G+V+E   LYE+
Sbjct: 445 ITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQ 504

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
            + +   P+ + ++ L + F + G  +    +  EM  LG  P+L++ NT ++ + KAG+
Sbjct: 505 MLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGE 564

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
               R+LF E+   G  PD ++ T LI    KA +A +A EL+  M+E    +D   YNT
Sbjct: 565 IEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNT 624

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
           +++     G V +A +L E+MK   + +P   +Y ++++       +D A  LFEE    
Sbjct: 625 VIDGFCKSGKVNKAYQLLEEMKTKGH-EPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSK 683

Query: 463 GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDV 522
           G+ +NV+  + LI   GK  RID+   +    + +G+ P+     CLL  +     +E++
Sbjct: 684 GIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALV---KAEEI 740

Query: 523 GKVITCLQ-----QANPKLVAFLNLIE 544
            + + C Q     +  P  + +  LI 
Sbjct: 741 SEALVCFQSMKDLKCTPNYITYSILIH 767



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 102/370 (27%), Positives = 169/370 (45%), Gaps = 10/370 (2%)

Query: 145 ITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQ 204
           + E+   P  E  + +L  LK    +  +F W +           YN  +  +   R+F 
Sbjct: 88  LAELDLNPNPELVIGVLRRLKDVNNAVNYFRWAERLTDRAHCREAYNSLLMVMARTRKFN 147

Query: 205 LIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAIL 264
            +EQ+  EM        N T   I+    +     EA  + + M K    P    Y+ ++
Sbjct: 148 CLEQILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREAFTFIQTMRKLKFRPAFSAYTNLI 207

Query: 265 DVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQ 324
              + S   + +L+L+++    G+  +   F+ L ++F   G  D    +L EMKS  ++
Sbjct: 208 GALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLE 267

Query: 325 PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384
           P++V+YN  ++  GKAGK  +A   F EM  +GL  D+ T T++I +  KA    +A+EL
Sbjct: 268 PDVVLYNVCIDCFGKAGKVDMAWKXFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVEL 327

Query: 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYG 444
           +E M +NK       YNT++      G  E+A  L E  +    C P   SY  +L+  G
Sbjct: 328 FEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKG-CIPSVVSYNCILSCLG 386

Query: 445 SGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD-- 502
             G VD A++ FEEM +  +  N+     +I  L KA +++  + V     D G+ P+  
Sbjct: 387 RKGQVDEALKKFEEMKKDAIP-NLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVI 445

Query: 503 ------DRLC 506
                 DRLC
Sbjct: 446 TVNIMVDRLC 455



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 148/311 (47%), Gaps = 1/311 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D  +Y+ +I    +     EA E F  M + G + D   Y+ ++D + KSGKV +   L 
Sbjct: 583 DARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLL 642

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
           E     G +P  + +  +     +    D    + +E KS G++ N+V+Y++L++  GK 
Sbjct: 643 EEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKV 702

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G+   A  + +E+++ GLTP+  T   L+    KA    +AL  ++ M++ K   ++I Y
Sbjct: 703 GRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITY 762

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           + L++    I    +A   +++M+   + KP+ ++YT M++     GN+  A  LFE+  
Sbjct: 763 SILIHGLCKIRKFNKAFVFWQEMQKQGF-KPNVFTYTTMISGLAKAGNIVEADTLFEKFK 821

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSE 520
           E G   +      +I+ L  A R  D  R+F  +  +G     + C  LL  +   E  E
Sbjct: 822 EKGGVADSAIYNAIIEGLSNANRASDAYRLFEEARLKGCSIYTKTCVVLLDSLHKAECIE 881

Query: 521 DVGKVITCLQQ 531
               V   L++
Sbjct: 882 QAAIVGAVLRE 892



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 135/282 (47%), Gaps = 1/282 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D +TY ++I    R    DEA + +E+M     +P+ V Y++++  + K G+ E+   +Y
Sbjct: 478 DAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIY 537

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
              +  G  PD +  +       ++G+ +  R + QE+K+LG  P+   Y  L+  + KA
Sbjct: 538 NEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKA 597

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G    A  LF  M E G   D +    +I  + K+     A +L E M+        + Y
Sbjct: 598 GFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTY 657

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
            ++++  A I  ++EA  LFE+ K S   + +   Y+++++ +G  G +D A  + EE+ 
Sbjct: 658 GSVIDGLAKIDRLDEAYMLFEEAK-SKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELM 716

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           + G+  NV    CL+  L KA  I + +  F    D    P+
Sbjct: 717 QKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPN 758



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 127/274 (46%), Gaps = 1/274 (0%)

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
           LD   Y+T+I    +    ++A +  E M   G  P  VTY +++D  AK  +++E   L
Sbjct: 617 LDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYML 676

Query: 280 YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
           +E   + G + + + +S L   FG+ G  D    +++E+   G+ PN+  +N LL+A+ K
Sbjct: 677 FEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVK 736

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
           A +   A   F  M +   TP+  T + LI    K R    A   W+ M++  +  +   
Sbjct: 737 AEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFT 796

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           Y T+++  A  G + EA+ LFE  K       D+  Y A++    +     +A  LFEE 
Sbjct: 797 YTTMISGLAKAGNIVEADTLFEKFKEKGGV-ADSAIYNAIIEGLSNANRASDAYRLFEEA 855

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGV 493
              G +I    C  L+  L KA  I+    V  V
Sbjct: 856 RLKGCSIYTKTCVVLLDSLHKAECIEQAAIVGAV 889



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 133/293 (45%), Gaps = 12/293 (4%)

Query: 140 AFLRAITEIPHQPTRENALLILNSL---KFWQKSYFFFNWIKSQNLFPMETIFYNVTM-- 194
           A  + I  +   P   +  ++++ L    F  ++Y  F  +K Q    ++T  YN  +  
Sbjct: 570 ALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCV-LDTRAYNTVIDG 628

Query: 195 --KSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTG 252
             KS +  + +QL+E    EM +   E   +TY ++I    + +  DEA   FE     G
Sbjct: 629 FCKSGKVNKAYQLLE----EMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKG 684

Query: 253 LMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIR 312
           +  + V YS+++D + K G+++E   + E  +  G  P+   ++ L     ++ +     
Sbjct: 685 IELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEAL 744

Query: 313 YVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIY 372
              Q MK L   PN + Y+ L+  + K  K   A   + EM + G  P+  T T +I   
Sbjct: 745 VCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGL 804

Query: 373 GKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
            KA    +A  L+E+ +E     D  +YN ++   ++     +A RLFE+ +L
Sbjct: 805 AKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFEEARL 857


>gi|358345906|ref|XP_003637015.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|358347053|ref|XP_003637577.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502950|gb|AES84153.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503512|gb|AES84715.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 823

 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 115/437 (26%), Positives = 194/437 (44%), Gaps = 54/437 (12%)

Query: 56  NPETKTLSLSEQLKPLSSTTLSPTK-NDRTPLLSKPKSTWVNPTKPRRSVLSLQR----- 109
           N E  TLSL   + P   T   P+K + + PLL  P     N  + R   L+L +     
Sbjct: 4   NLEINTLSL---VAPPRETISIPSKTSQQQPLLDYP-----NDPEARFKNLNLHKNADKR 55

Query: 110 --------QKRSTYS--------YNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQPT 153
                   +K++ ++        YN RV  +      ++D D       +A+     +  
Sbjct: 56  VNSNGFVLKKKNVHTKCSTKCVNYNGRVLAILQALDTIHDLD-------KALGPWEKRLG 108

Query: 154 RENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEM 213
           ++   +IL     W+++   F W K +  + +  I YN+    L   R+++++E L NEM
Sbjct: 109 KKEMSIILKEQVCWKRALMIFEWFKKKGCYELNVIHYNIMFWILGKERKWRVLESLWNEM 168

Query: 214 VSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG-- 271
             N +   N TY T+I    +  L +EA+ W  RM   G+ PDEVT   ++ +Y ++G  
Sbjct: 169 NENGVVPVNSTYGTLIDVYSKGGLIEEALAWLLRMQSEGMEPDEVTMGVVVQLYKRAGEF 228

Query: 272 -KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
            K EE    + RG       +P+   +      +    D  R+V  E+  + V  N   Y
Sbjct: 229 QKAEEFFLRWSRG-------EPLRIEI------DHNPADTRRHVCNEVSHVNVCLNSHTY 275

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
           NTL++  GKAG+  +   +F  M++ G+     T   +I +YG     ++   L +RM E
Sbjct: 276 NTLIDTYGKAGQIRVVYEIFARMIKQGVVLTTVTFNTMIHLYGNHGRIREVSSLLKRMEE 335

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
            +   D   YN L+++      +  A + F  MK   + +PD  SY  +L  Y +   V 
Sbjct: 336 LRCLPDTRTYNILISVLVKHNNINLATKYFAKMK-EAFLEPDVVSYRTLLYAYSTRKMVQ 394

Query: 451 NAIELFEEMSELGVAIN 467
            A E+ +EM E G+ I+
Sbjct: 395 EAEEIVQEMDERGLKID 411



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 154/320 (48%), Gaps = 7/320 (2%)

Query: 219 ELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS 278
           +L  + ++ +I      N +D+A + F+ M K G+  +E +YS+++ + A + K      
Sbjct: 477 KLSVLVFNVMIKAYGIGNCYDKACQLFDCMKKFGVAANECSYSSLIHILASADKPHIAKP 536

Query: 279 LYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMG 338
              +   +G   D I +  +   FG+ G  +    +  EM    V+P+ +++  L+ A  
Sbjct: 537 YLNKMQVAGLVSDCIPYCAVISSFGKLGQLNMAEGLYNEMIGHDVEPDAIIFGALINAFA 596

Query: 339 KAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFI 398
                  A S  D M ++G   ++     L+K+Y K  + K+A E++  ++ +       
Sbjct: 597 DVANVKKANSYVDRMRKAGFIGNQAIHNTLMKLYTKLGYLKEAQEIYTLLQSSDQGPSVF 656

Query: 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458
             N ++++  +  +VE+A+ +FE +K +     + +SY  ML +Y   G +D A ++ +E
Sbjct: 657 SSNCMIDLYTERLMVEQAKEIFESLKKNSI--ANEFSYAMMLCMYKKIGRLDEAFQIAKE 714

Query: 459 MSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD---RLCGCLLSVVSL 515
           M +LG   +++    ++      RR+ +  + F   I+ G++PDD   R  G LL  +S 
Sbjct: 715 MGKLGFLTDLLSYNNVLGLYSMDRRLWEAKKTFKEMIESGIQPDDFTFRALGHLL--LSY 772

Query: 516 CETSEDVGKVITCLQQANPK 535
             +  ++G +   +++  P+
Sbjct: 773 GVSKRNIGMLEVMVKRNAPR 792



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 126/276 (45%), Gaps = 3/276 (1%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
            + NE+    + L++ TY+T+I    +        E F RM K G++   VT++ ++ +Y
Sbjct: 258 HVCNEVSHVNVCLNSHTYNTLIDTYGKAGQIRVVYEIFARMIKQGVVLTTVTFNTMIHLY 317

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
              G++ EV SL +R       PD   +++L  +  +  + +       +MK   ++P++
Sbjct: 318 GNHGRIREVSSLLKRMEELRCLPDTRTYNILISVLVKHNNINLATKYFAKMKEAFLEPDV 377

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
           V Y TLL A         A  +  EM E GL  DE T +AL ++Y ++   + +  LW  
Sbjct: 378 VSYRTLLYAYSTRKMVQEAEEIVQEMDERGLKIDEFTQSALTRMYVESNMLEKSW-LWFM 436

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
                  +    Y+  ++   + G   EAE++F  M   +  K     +  M+  YG G 
Sbjct: 437 RFHQDGNITSCCYSANIDAYGEKGYTLEAEKVF--MCCKERKKLSVLVFNVMIKAYGIGN 494

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483
             D A +LF+ M + GVA N    + LI  L  A +
Sbjct: 495 CYDKACQLFDCMKKFGVAANECSYSSLIHILASADK 530



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/280 (22%), Positives = 125/280 (44%), Gaps = 2/280 (0%)

Query: 185 METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEW 244
           +  + +NV +K+   G  +    QL + M    +  +  +YS++I      +    A  +
Sbjct: 478 LSVLVFNVMIKAYGIGNCYDKACQLFDCMKKFGVAANECSYSSLIHILASADKPHIAKPY 537

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
             +M   GL+ D + Y A++  + K G++     LY   +    +PD I F  L   F +
Sbjct: 538 LNKMQVAGLVSDCIPYCAVISSFGKLGQLNMAEGLYNEMIGHDVEPDAIIFGALINAFAD 597

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
             +       +  M+  G   N  ++NTL++   K G    A+ ++  +  S   P   +
Sbjct: 598 VANVKKANSYVDRMRKAGFIGNQAIHNTLMKLYTKLGYLKEAQEIYTLLQSSDQGPSVFS 657

Query: 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
              +I +Y +    + A E++E +++N    +F  Y  +L M   IG ++EA ++ ++M 
Sbjct: 658 SNCMIDLYTERLMVEQAKEIFESLKKNSIANEFS-YAMMLCMYKKIGRLDEAFQIAKEMG 716

Query: 425 LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
              +   D  SY  +L +Y     +  A + F+EM E G+
Sbjct: 717 KLGFL-TDLLSYNNVLGLYSMDRRLWEAKKTFKEMIESGI 755



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/249 (22%), Positives = 103/249 (41%), Gaps = 26/249 (10%)

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
           N++ YN +   +GK  K  +  SL++EM E+G+ P   T   LI +Y K    ++AL   
Sbjct: 141 NVIHYNIMFWILGKERKWRVLESLWNEMNENGVVPVNSTYGTLIDVYSKGGLIEEALAWL 200

Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLF------EDMKLSDYCKP-------- 431
            RM+      D +    ++ +    G  ++AE  F      E +++     P        
Sbjct: 201 LRMQSEGMEPDEVTMGVVVQLYKRAGEFQKAEEFFLRWSRGEPLRIEIDHNPADTRRHVC 260

Query: 432 ----------DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
                     ++++Y  +++ YG  G +    E+F  M + GV +  +    +I   G  
Sbjct: 261 NEVSHVNVCLNSHTYNTLIDTYGKAGQIRVVYEIFARMIKQGVVLTTVTFNTMIHLYGNH 320

Query: 482 RRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQA--NPKLVAF 539
            RI ++  +     +    PD R    L+SV+          K    +++A   P +V++
Sbjct: 321 GRIREVSSLLKRMEELRCLPDTRTYNILISVLVKHNNINLATKYFAKMKEAFLEPDVVSY 380

Query: 540 LNLIEDNST 548
             L+   ST
Sbjct: 381 RTLLYAYST 389



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 113/280 (40%), Gaps = 34/280 (12%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D  TY+ +I+   + N  + A ++F +M +  L PD V+Y  +L  Y+    V+E   + 
Sbjct: 341 DTRTYNILISVLVKHNNINLATKYFAKMKEAFLEPDVVSYRTLLYAYSTRKMVQEAEEIV 400

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESG----------------------------DYDGIR 312
           +     G K D    S L +M+ ES                              Y    
Sbjct: 401 QEMDERGLKIDEFTQSALTRMYVESNMLEKSWLWFMRFHQDGNITSCCYSANIDAYGEKG 460

Query: 313 YVLQEMKSLGV-----QPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
           Y L+  K         + +++V+N +++A G       A  LFD M + G+  +E + ++
Sbjct: 461 YTLEAEKVFMCCKERKKLSVLVFNVMIKAYGIGNCYDKACQLFDCMKKFGVAANECSYSS 520

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           LI I   A     A     +M+      D I Y  +++    +G +  AE L+ +M   D
Sbjct: 521 LIHILASADKPHIAKPYLNKMQVAGLVSDCIPYCAVISSFGKLGQLNMAEGLYNEMIGHD 580

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
             +PD   + A++N +    NV  A    + M + G   N
Sbjct: 581 -VEPDAIIFGALINAFADVANVKKANSYVDRMRKAGFIGN 619


>gi|297852926|ref|XP_002894344.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297340186|gb|EFH70603.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 650

 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 86/317 (27%), Positives = 167/317 (52%), Gaps = 12/317 (3%)

Query: 190 YNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERM 248
           Y + ++++ R G+  + +  L NEM++  + L+ + Y+T++    +  + D+AI+ F RM
Sbjct: 273 YTIMIRTMGRIGKYDEAV-GLFNEMITEGLTLNVVGYNTLMQVLAKGKMVDKAIQVFSRM 331

Query: 249 YKTGLMPDEVTYSAILDVYAKSG---KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
            +TG  P+E TYS +L++    G   +++ ++ + +R +  G       +S L +   + 
Sbjct: 332 VETGCRPNEYTYSLVLNLLVAEGQLVRLDGIVEISKRYMTQG------IYSYLVRTLSKL 385

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G       +  +M S  V+     Y ++LE++  AGK   A  +  ++ E G+  D    
Sbjct: 386 GHVSEAHRLFCDMWSFPVKGERDSYMSMLESLCGAGKTIEAIEMLSKIHEKGVVTDTMMY 445

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
             +    GK +      +L+E+M+++    D   YN L++    +G V+EA  +FE+++ 
Sbjct: 446 NTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILISSFGRVGEVDEAINIFEELER 505

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
           SD CKPD  SY +++N  G  G+VD A   F+EM E G+  +V+  + L++C GK  R++
Sbjct: 506 SD-CKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTERVE 564

Query: 486 DLVRVFGVSIDRGVKPD 502
               +F   + +G +P+
Sbjct: 565 MAYSLFEEMLVKGCQPN 581



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 109/204 (53%), Gaps = 1/204 (0%)

Query: 200 GRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVT 259
           G+  + IE L+ ++    +  D + Y+T+ +   +        + FE+M K G  PD  T
Sbjct: 421 GKTIEAIEMLS-KIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFT 479

Query: 260 YSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMK 319
           Y+ ++  + + G+V+E ++++E    S  KPD I+++ L    G++GD D      +EM+
Sbjct: 480 YNILISSFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQ 539

Query: 320 SLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAK 379
             G+ P++V Y+TL+E  GK  +  +A SLF+EM+  G  P+  T   L+    K+    
Sbjct: 540 EKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKSGRTA 599

Query: 380 DALELWERMRENKWPMDFILYNTL 403
           +A++L+ +M++     D I Y  L
Sbjct: 600 EAVDLYTKMKQQGLTPDSITYTVL 623



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 60/195 (30%), Positives = 103/195 (52%), Gaps = 4/195 (2%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           +T+ YN    +L   +Q   I  L  +M  +    D  TY+ +I+   R    DEAI  F
Sbjct: 441 DTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILISSFGRVGEVDEAINIF 500

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           E + ++   PD ++Y+++++   K+G V+E    ++     G  PD + +S L + FG++
Sbjct: 501 EELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKT 560

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
              +    + +EM   G QPN+V YN LL+ + K+G+   A  L+ +M + GLTPD  T 
Sbjct: 561 ERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKSGRTAEAVDLYTKMKQQGLTPDSITY 620

Query: 366 TALIKI----YGKAR 376
           T L ++    +GK+R
Sbjct: 621 TVLERLQSGSHGKSR 635



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 99/200 (49%), Gaps = 1/200 (0%)

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           EAIE   ++++ G++ D + Y+ +     K  ++  +  L+E+    G  PD   +++L 
Sbjct: 425 EAIEMLSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILI 484

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
             FG  G+ D    + +E++    +P+++ YN+L+  +GK G    A   F EM E GL 
Sbjct: 485 SSFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLN 544

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
           PD  T + L++ +GK    + A  L+E M       + + YN LL+     G   EA  L
Sbjct: 545 PDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKSGRTAEAVDL 604

Query: 420 FEDMKLSDYCKPDNYSYTAM 439
           +  MK      PD+ +YT +
Sbjct: 605 YTKMK-QQGLTPDSITYTVL 623



 Score = 97.4 bits (241), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 99/199 (49%), Gaps = 7/199 (3%)

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
           S  +D +R +L  M    V  N+   N L+   G      +   L  +    GL  +  T
Sbjct: 149 SDRFDRVRSILDSMVKSNVHGNISTVNILIGFFGDTEDLQMCLRLVKKW---GLKMNSFT 205

Query: 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
              L++ Y ++R +  A +++  +R     +D   YN LL+  A     E+A ++FEDMK
Sbjct: 206 YKCLLQAYLRSRDSSKAFDVYCEIRRGGHKLDIFAYNMLLDALAK---DEKACQVFEDMK 262

Query: 425 LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484
              +C+ D YSYT M+   G  G  D A+ LF EM   G+ +NV+G   L+Q L K + +
Sbjct: 263 -KRHCRRDEYSYTIMIRTMGRIGKYDEAVGLFNEMITEGLTLNVVGYNTLMQVLAKGKMV 321

Query: 485 DDLVRVFGVSIDRGVKPDD 503
           D  ++VF   ++ G +P++
Sbjct: 322 DKAIQVFSRMVETGCRPNE 340



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 80/331 (24%), Positives = 151/331 (45%), Gaps = 15/331 (4%)

Query: 218 IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL 277
           +++++ TY  ++    R     +A + +  + + G   D   Y+ +LD  AK    E+  
Sbjct: 199 LKMNSFTYKCLLQAYLRSRDSSKAFDVYCEIRRGGHKLDIFAYNMLLDALAKD---EKAC 255

Query: 278 SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
            ++E       + D  +++++ +  G  G YD    +  EM + G+  N+V YNTL++ +
Sbjct: 256 QVFEDMKKRHCRRDEYSYTIMIRTMGRIGKYDEAVGLFNEMITEGLTLNVVGYNTLMQVL 315

Query: 338 GKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIY---GKARWAKDALELWERMRENKWP 394
            K      A  +F  MVE+G  P+E T + ++ +    G+       +E+ +R       
Sbjct: 316 AKGKMVDKAIQVFSRMVETGCRPNEYTYSLVLNLLVAEGQLVRLDGIVEISKRY------ 369

Query: 395 MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIE 454
           M   +Y+ L+   + +G V EA RLF DM  S   K +  SY +ML      G    AIE
Sbjct: 370 MTQGIYSYLVRTLSKLGHVSEAHRLFCDM-WSFPVKGERDSYMSMLESLCGAGKTIEAIE 428

Query: 455 LFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVS 514
           +  ++ E GV  + M    +   LGK ++I  +  +F      G  PD      L+S   
Sbjct: 429 MLSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILISSFG 488

Query: 515 LCETSEDVGKVITCLQQAN--PKLVAFLNLI 543
                ++   +   L++++  P ++++ +LI
Sbjct: 489 RVGEVDEAINIFEELERSDCKPDIISYNSLI 519


>gi|168045490|ref|XP_001775210.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673423|gb|EDQ59946.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 404

 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/349 (27%), Positives = 166/349 (47%), Gaps = 14/349 (4%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           W+ +   F+W K Q+ +   +  Y   +  L    +      L  EM+  + + D  TY+
Sbjct: 26  WRCTLEVFSWSKKQSWYCPNSRLYTRLIGFLGREGRVHNATLLFQEMLLEKCQADQYTYT 85

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTG---LMPDEVTYSAILDVYAKSGKVEEVLSLY--- 280
            ++    +  +F+EA+  F  M ++      P+ VT +A++D   K G  ++ + ++   
Sbjct: 86  ALVNAYGKAKMFEEALAVFSHMKESNEPNCQPNTVTCNALIDALVKGGLYDQAIQVFFDM 145

Query: 281 ---ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS----LGVQPNLVVYNTL 333
                G+  G +P+ I ++VL     + G  D    VLQ M+       VQPN   YNTL
Sbjct: 146 RDGTNGLEHGCEPNVITYNVLIDALCKEGLLDIGMKVLQYMRDGNTDQSVQPNSATYNTL 205

Query: 334 LEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKW 393
           + A GK G    A  L D MVE G+ PD  T TALI  YGKA   ++A   ++ M+    
Sbjct: 206 INACGKGGLYEKAEELVDLMVEHGVQPDHITYTALIDAYGKAGLWENAENTFKGMKGTNV 265

Query: 394 PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAI 453
            +D + Y  +++     GL ++AE +F+ M+ S   +P+  +Y +++  YG  G  + + 
Sbjct: 266 SVDVMAYTAMIDAYGREGLYQKAEEMFKMMQHSGL-RPNQVTYLSLMEAYGKAGLPEESR 324

Query: 454 ELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            +F  M E G   NV+  + LI   GKA    +  R+  +    G +P+
Sbjct: 325 NVFNIMRESGYEGNVLIYSSLIDAYGKAGNYLEAARMLDMMRRAGCQPN 373



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 125/243 (51%), Gaps = 4/243 (1%)

Query: 187 TIFYNVTMKSL----RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
            I YNV + +L          ++++ + +      ++ ++ TY+T+I    +  L+++A 
Sbjct: 160 VITYNVLIDALCKEGLLDIGMKVLQYMRDGNTDQSVQPNSATYNTLINACGKGGLYEKAE 219

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
           E  + M + G+ PD +TY+A++D Y K+G  E   + ++    +    D +A++ +   +
Sbjct: 220 ELVDLMVEHGVQPDHITYTALIDAYGKAGLWENAENTFKGMKGTNVSVDVMAYTAMIDAY 279

Query: 303 GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
           G  G Y     + + M+  G++PN V Y +L+EA GKAG P  +R++F+ M ESG   + 
Sbjct: 280 GREGLYQKAEEMFKMMQHSGLRPNQVTYLSLMEAYGKAGLPEESRNVFNIMRESGYEGNV 339

Query: 363 KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED 422
              ++LI  YGKA    +A  + + MR      + I Y+ +L+ C       EA+ L   
Sbjct: 340 LIYSSLIDAYGKAGNYLEAARMLDMMRRAGCQPNLITYSAILSSCCKSNCWVEAQVLLRR 399

Query: 423 MKL 425
           +++
Sbjct: 400 LQV 402



 Score = 44.7 bits (104), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 28/135 (20%), Positives = 67/135 (49%), Gaps = 5/135 (3%)

Query: 166 FWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQ--FQLIEQLANEMVSNEIELDNI 223
            W+ +   F  +K  N+  ++ + Y   + +  +GR+  +Q  E++   M  + +  + +
Sbjct: 249 LWENAENTFKGMKGTNV-SVDVMAYTAMIDA--YGREGLYQKAEEMFKMMQHSGLRPNQV 305

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           TY +++    +  L +E+   F  M ++G   + + YS+++D Y K+G   E   + +  
Sbjct: 306 TYLSLMEAYGKAGLPEESRNVFNIMRESGYEGNVLIYSSLIDAYGKAGNYLEAARMLDMM 365

Query: 284 VASGWKPDPIAFSVL 298
             +G +P+ I +S +
Sbjct: 366 RRAGCQPNLITYSAI 380


>gi|255551759|ref|XP_002516925.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544013|gb|EEF45539.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 901

 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 87/293 (29%), Positives = 149/293 (50%), Gaps = 4/293 (1%)

Query: 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
            DEA   FE M      PDEVT+ +++D   K G+V++   LYE+ + S   P+ + ++ 
Sbjct: 458 LDEACSIFEGMNHKICSPDEVTFCSLIDGLGKQGRVDDAYRLYEQMLDSDKIPNAVVYTS 517

Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
           L K F + G  +    + +EM   G  P+L + N  ++ + KAG+ G  R+LF+E+   G
Sbjct: 518 LIKSFFKCGRKEDGHKIFKEMIHRGCSPDLRLLNAYMDCVFKAGETGKGRALFEEIKSRG 577

Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417
             PD  + + LI    KA +A++  EL+  M+E    +D   YNT ++     G V +A 
Sbjct: 578 FIPDVMSYSILIHGLVKAGFARETYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAY 637

Query: 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
           +L E+MK     +P   +Y ++++       +D A  LFEE    G+ +NV+  + LI  
Sbjct: 638 QLLEEMKTKGR-QPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSLIDG 696

Query: 478 LGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQ 530
            GK  RID+   +    + +G+ P+     CLL  +     +E++ + + C Q
Sbjct: 697 FGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALV---KAEEINEALVCFQ 746



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 161/317 (50%), Gaps = 4/317 (1%)

Query: 199 FGRQFQLIEQLA--NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPD 256
           F R+ +L   L+  +EM SN +  D + Y+  I C  +    D A ++F  +   GL+PD
Sbjct: 243 FAREGRLDAALSLLDEMKSNCLHADIVLYNVCIDCFGKAGKVDMAWKFFHEIKSHGLLPD 302

Query: 257 EVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQ 316
           +VTY++++ V  K  +++E + ++E+   +   P   A++ +   +G +G +D    +L+
Sbjct: 303 DVTYTSMIGVLCKGNRLDEAVEIFEQMEQNRNVPCAYAYNTMIMGYGSAGKFDEAYSLLE 362

Query: 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
             K+ G  P+++ YN +L  +GK G+ G A   F+EM +    P+  T   LI +  KA 
Sbjct: 363 RQKARGCIPSVIAYNCILTCLGKKGRLGEALRTFEEMKKDA-APNLSTYNVLIDMLCKAG 421

Query: 377 WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY 436
             + A ++ + M+E     + +  N +++       ++EA  +FE M     C PD  ++
Sbjct: 422 EVEAAFKVRDAMKEAGLFPNVMTVNIMIDRLCKAKKLDEACSIFEGMN-HKICSPDEVTF 480

Query: 437 TAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496
            ++++  G  G VD+A  L+E+M +     N +  T LI+   K  R +D  ++F   I 
Sbjct: 481 CSLIDGLGKQGRVDDAYRLYEQMLDSDKIPNAVVYTSLIKSFFKCGRKEDGHKIFKEMIH 540

Query: 497 RGVKPDDRLCGCLLSVV 513
           RG  PD RL    +  V
Sbjct: 541 RGCSPDLRLLNAYMDCV 557



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 90/371 (24%), Positives = 161/371 (43%), Gaps = 10/371 (2%)

Query: 144 AITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQF 203
           A++     P  +  + +L   K   ++  +F W + +    +    Y+  +  +    +F
Sbjct: 85  ALSLFVESPKTDLVIGVLRRAKDVNQAISYFRWTERKTDQALCPEAYDSLLLVMAKNVKF 144

Query: 204 QLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAI 263
              EQ+  EM          T   +I    + N   E  +  + M K    P    Y+ +
Sbjct: 145 DYFEQILGEMSIAGFGPSTKTCIELILSCIKSNKLREGFDLIQCMRKFKFRPAFSAYTTL 204

Query: 264 LDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGV 323
           +   +   + + +L+L+ +    G++     F+ + ++F   G  D    +L EMKS  +
Sbjct: 205 IGALSSVQESDIMLTLFHQMQELGYEVSVHLFTTVIRVFAREGRLDAALSLLDEMKSNCL 264

Query: 324 QPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALE 383
             ++V+YN  ++  GKAGK  +A   F E+   GL PD+ T T++I +  K     +A+E
Sbjct: 265 HADIVLYNVCIDCFGKAGKVDMAWKFFHEIKSHGLLPDDVTYTSMIGVLCKGNRLDEAVE 324

Query: 384 LWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIY 443
           ++E+M +N+       YNT++      G  +EA  L E  K    C P   +Y  +L   
Sbjct: 325 IFEQMEQNRNVPCAYAYNTMIMGYGSAGKFDEAYSLLERQKARG-CIPSVIAYNCILTCL 383

Query: 444 GSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD- 502
           G  G +  A+  FEEM +   A N+     LI  L KA  ++   +V     + G+ P+ 
Sbjct: 384 GKKGRLGEALRTFEEMKK-DAAPNLSTYNVLIDMLCKAGEVEAAFKVRDAMKEAGLFPNV 442

Query: 503 -------DRLC 506
                  DRLC
Sbjct: 443 MTVNIMIDRLC 453



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 86/315 (27%), Positives = 142/315 (45%), Gaps = 8/315 (2%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSL---RFGRQFQLIEQLANEMVSNEIELDNITY 225
           K    F  IKS+   P + + Y++ +  L    F R+     +L   M      LD   Y
Sbjct: 565 KGRALFEEIKSRGFIP-DVMSYSILIHGLVKAGFARE---TYELFYAMKEQGCVLDTHAY 620

Query: 226 STIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVA 285
           +T I    +    ++A +  E M   G  P  VTY +++D  AK  +++E   L+E   +
Sbjct: 621 NTFIDGFCKSGKVNKAYQLLEEMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKS 680

Query: 286 SGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGL 345
           +G + + + +S L   FG+ G  D    +++E+   G+ PN+  +N LL+A+ KA +   
Sbjct: 681 NGLELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINE 740

Query: 346 ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405
           A   F  M     TP+  T + LI    + R    A   W+ M++     + I Y T++ 
Sbjct: 741 ALVCFQNMKNLKGTPNHITYSILINGLCRVRKFNKAFVFWQEMQKQGLKPNTITYTTMIA 800

Query: 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
             A  G + EA  LFE  K ++   PD+ SY A++           A ++FEE    G  
Sbjct: 801 GLAKAGNIAEASSLFERFK-ANGGVPDSASYNAIIEGLSYSRRAMEAYKIFEETRMKGCN 859

Query: 466 INVMGCTCLIQCLGK 480
           I+   C  L+  L K
Sbjct: 860 IHTKTCIALLDALQK 874



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 141/311 (45%), Gaps = 1/311 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D ++YS +I    +     E  E F  M + G + D   Y+  +D + KSGKV +   L 
Sbjct: 581 DVMSYSILIHGLVKAGFARETYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLL 640

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
           E     G +P  + +  +     +    D    + +E KS G++ N+V+Y++L++  GK 
Sbjct: 641 EEMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSLIDGFGKV 700

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G+   A  + +E+++ GLTP+  T   L+    KA    +AL  ++ M+  K   + I Y
Sbjct: 701 GRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALVCFQNMKNLKGTPNHITY 760

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           + L+N    +    +A   +++M+     KP+  +YT M+      GN+  A  LFE   
Sbjct: 761 SILINGLCRVRKFNKAFVFWQEMQKQGL-KPNTITYTTMIAGLAKAGNIAEASSLFERFK 819

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSE 520
             G   +      +I+ L  +RR  +  ++F  +  +G     + C  LL  +   E  E
Sbjct: 820 ANGGVPDSASYNAIIEGLSYSRRAMEAYKIFEETRMKGCNIHTKTCIALLDALQKDECLE 879

Query: 521 DVGKVITCLQQ 531
               V   L++
Sbjct: 880 QAAIVGAVLRE 890



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/224 (19%), Positives = 96/224 (42%), Gaps = 5/224 (2%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ--LANEMVSNEIELDNITYS 226
           ++Y  F   KS  L  +  + Y+  +    FG+  ++ E   +  E++   +  +  T++
Sbjct: 670 EAYMLFEEAKSNGL-ELNVVIYSSLIDG--FGKVGRIDEAYLIMEELMQKGLTPNVYTWN 726

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
            ++    +    +EA+  F+ M      P+ +TYS +++   +  K  +    ++     
Sbjct: 727 CLLDALVKAEEINEALVCFQNMKNLKGTPNHITYSILINGLCRVRKFNKAFVFWQEMQKQ 786

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G KP+ I ++ +     ++G+      + +  K+ G  P+   YN ++E +  + +   A
Sbjct: 787 GLKPNTITYTTMIAGLAKAGNIAEASSLFERFKANGGVPDSASYNAIIEGLSYSRRAMEA 846

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
             +F+E    G     KT  AL+    K    + A  +   +RE
Sbjct: 847 YKIFEETRMKGCNIHTKTCIALLDALQKDECLEQAAIVGAVLRE 890


>gi|302798857|ref|XP_002981188.1| hypothetical protein SELMODRAFT_420654 [Selaginella moellendorffii]
 gi|300151242|gb|EFJ17889.1| hypothetical protein SELMODRAFT_420654 [Selaginella moellendorffii]
          Length = 796

 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 123/607 (20%), Positives = 245/607 (40%), Gaps = 79/607 (13%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           FF WI+ Q  +   T  +++ + +   G+ FQ ++++ +++ +++  +  + Y+T+I   
Sbjct: 121 FFQWIRRQKWYVPSTYSFSILLNTYGRGKDFQAVQRVLSDLKADKCPMTTVAYNTLIKVY 180

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            + +  DEA  +++ M  +  +PD  T++ ++ +Y+ +G+ E+VL +Y+     G   D 
Sbjct: 181 GKAHKLDEAWGYYKEMQDSRCVPDIFTFNTLMSLYSYAGQSEKVLEVYDEMQKIGCSLDR 240

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           + + V+    G+ G  D    + + MK+ G QPN V Y+ L+    K+G+  +    F+E
Sbjct: 241 VGYEVVVPHAGKVGRLDLACMLFERMKAEGHQPNAVAYSALIAGQLKSGRLEIGTKYFEE 300

Query: 353 M------------------------VESGLT-----------PDEKTLTALIKIYGKARW 377
           M                        +E+GL            P+     AL+  + KA  
Sbjct: 301 MRSLEIRPLLGTFASLIEAYCKSGRLETGLKFFKDMEAFNYKPNLCIYAALVDAHAKAGM 360

Query: 378 AKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYT 437
              ALE +ERMR     +  +++  L+   A  G  E A RL+ +M+     +P +++  
Sbjct: 361 LDAALEFYERMRGVGLWLPPLIFAVLIEQHAQAGKAETAVRLYREMRGVG-LRPSHFTCR 419

Query: 438 AMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDR 497
            ++     GG  D+   +  EM E+G+ +       +++ L   +RI D   +F      
Sbjct: 420 IVVGAVAKGGKYDDVERILFEMQEMGLNVADAVNDSIVK-LVDDKRISDAWELFLKVTGH 478

Query: 498 GVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKL--------------------- 536
           G  P   LC  +L     C   E   ++++ +Q+    +                     
Sbjct: 479 GFTPHVSLCREILHGFLSCGDMEHARQMLSFMQRPGSAVDLRTYCMLLEFFLRGSRLEHE 538

Query: 537 ---VAFLNLIEDNSTGF-----------------ENIKEEFRNVIKDTEVDARRPFCNCL 576
              ++F+   +  +  F                 + IK  +  +  + +   RR   N L
Sbjct: 539 EVVMSFMRETKHPAHSFLCGLMGSSKHRNGQSLADYIKSFYSELEAEVDFKTRRYLTNVL 598

Query: 577 IDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLD-EWSLDVRSLSVGAAQTALEEWMWT 635
           ++         +A     +     +YP       D  W L VRS+S+GAA   +   +  
Sbjct: 599 LNYLVVMGQERKARSFWKVVYQIHMYPNSIVLQGDLTWCLKVRSMSIGAALIGVLCTLEK 658

Query: 636 LAKIVLREEVLPQLFLAETGTGTHKFSQGLATAFASHVNKLAAPFRQSEGKAGCFVATRE 695
             + +L+   +PQ     TG+     +  +  A  + +  L +PF   +   G F     
Sbjct: 659 FRERILKRRFVPQRIKILTGSKADSDAIAVRQAIEAMMKPLDSPFIFQDEDLGSFWCRGS 718

Query: 696 DLVSWVQ 702
             V W +
Sbjct: 719 FFVKWFR 725



 Score = 42.0 bits (97), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 27/116 (23%), Positives = 50/116 (43%)

Query: 416 AERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLI 475
           A   F+ ++   +  P  YS++ +LN YG G +      +  ++      +  +    LI
Sbjct: 118 ANGFFQWIRRQKWYVPSTYSFSILLNTYGRGKDFQAVQRVLSDLKADKCPMTTVAYNTLI 177

Query: 476 QCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ 531
           +  GKA ++D+    +    D    PD      L+S+ S    SE V +V   +Q+
Sbjct: 178 KVYGKAHKLDEAWGYYKEMQDSRCVPDIFTFNTLMSLYSYAGQSEKVLEVYDEMQK 233


>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
 gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
          Length = 725

 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 96/299 (32%), Positives = 143/299 (47%), Gaps = 2/299 (0%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMV-SNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
           I YN  M  L  GR+     QL  EM  S     D  TYSTI+    +    D+A    E
Sbjct: 185 ITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVE 244

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
            M   G  P+ VTYS++L    K+GK++E  +L +R   SG  P+ + ++ +     + G
Sbjct: 245 AMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLG 304

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
             D   ++L+EM   G QPN+V Y  LL+A  K GK   A  L + MVE G  P+  T  
Sbjct: 305 RIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYN 364

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
           +L+ ++ K    + A +L   M +     + + YNT++        V E   L E M LS
Sbjct: 365 SLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQM-LS 423

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
           + C PD  ++  +++       VD A ELF  + E G   N++    L+  L K+RR D
Sbjct: 424 NNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFD 482



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 114/471 (24%), Positives = 211/471 (44%), Gaps = 45/471 (9%)

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           P +++ YN  +  L    +     +L  EMV N    +  +Y+T++    + N  + A+ 
Sbjct: 41  PPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALW 100

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
             E+M   G  PD V+Y+ +++   K  +V+E   + ++ +  G +P+ I +  L   F 
Sbjct: 101 LLEQMVMRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFC 160

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG-LTPDE 362
             GD DG   ++++M   G +PN + YN ++  +    K   A  LF EM ESG   PD 
Sbjct: 161 RVGDLDGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDV 220

Query: 363 KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED 422
            T + ++    K+    DA  L E M       + + Y++LL+     G ++EA  L + 
Sbjct: 221 FTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQR 280

Query: 423 MKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKAR 482
           M  S  C P+  +Y  +++ +   G +D A  L EEM + G   NV+  T L+    K  
Sbjct: 281 MTRSG-CSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCG 339

Query: 483 RIDDLVRVFGVSIDRGVKPD-----------------DRLC---------GCLLSVVS-- 514
           + +D + +  V +++G  P+                 +R C         GC+ +VVS  
Sbjct: 340 KAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYN 399

Query: 515 -----LCETSEDVGKVITCLQQ-----ANPKLVAFLNLIEDNSTGFE-NIKEEFRNVIKD 563
                LC+ ++ V + +  L+Q       P +V F  +I+     +  +I  E  N+I++
Sbjct: 400 TVIAGLCKATK-VHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQE 458

Query: 564 TEVDARRPFCNCLID-ICRNRNLNERAHELLYLGTLYGLYPGL--HNKTLD 611
           +         N L+  +C++R  ++  + L  +    G  P +  +N  +D
Sbjct: 459 SGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVID 509



 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 90/327 (27%), Positives = 151/327 (46%), Gaps = 8/327 (2%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           +TY+TII    +    DEA    E M   G  P+ VTY+ +LD + K GK E+ + L E 
Sbjct: 291 VTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEV 350

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
            V  G+ P+   ++ L  MF +  + +    +L  M   G  PN+V YNT++  + KA K
Sbjct: 351 MVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATK 410

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
                 L ++M+ +   PD  T   +I    K      A EL+  ++E+    + + YN+
Sbjct: 411 VHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNS 470

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
           L++        ++AE L  +M     C PD  +Y  +++       VD A +LF +M   
Sbjct: 471 LVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSD 530

Query: 463 GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDV 522
           G+A + +  + +I  L K R +D+   V  + +  G  P     G L+     C+T  ++
Sbjct: 531 GLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLID--GFCKTG-NL 587

Query: 523 GKVITCLQ-----QANPKLVAFLNLIE 544
            K +  LQ      + P +V F   I+
Sbjct: 588 DKALEILQLLLSKGSYPDVVTFSIFID 614



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 136/263 (51%), Gaps = 1/263 (0%)

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           +A+  F  M KT   PD VTY+ +++  +KS ++++ + L E  V +G+ P+  +++ + 
Sbjct: 28  DAVLHFREMSKT-CPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVL 86

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
             F ++   +   ++L++M   G  P++V Y T++  + K  +   A  + D+M++ G  
Sbjct: 87  HGFCKANRVENALWLLEQMVMRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQ 146

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
           P+  T   L+  + +      A+EL  +M E  +  + I YN +++       ++ A +L
Sbjct: 147 PNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSALQL 206

Query: 420 FEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479
           F++M+ S  C PD ++Y+ +++     G VD+A  L E M   G + NV+  + L+  L 
Sbjct: 207 FKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGLC 266

Query: 480 KARRIDDLVRVFGVSIDRGVKPD 502
           KA ++D+   +       G  P+
Sbjct: 267 KAGKLDEATALLQRMTRSGCSPN 289



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 118/241 (48%), Gaps = 2/241 (0%)

Query: 170 SYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNE-IELDNITYSTI 228
           +Y  FN I+     P   + YN  +  L   R+F   E L  EM   +    D ITY+T+
Sbjct: 449 AYELFNLIQESGCTP-NLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTV 507

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
           I    +    D A + F +M   GL PD+VTYS ++    K   ++E  ++ E  + +G+
Sbjct: 508 IDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGF 567

Query: 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348
            P  I +  L   F ++G+ D    +LQ + S G  P++V ++  ++ + K G+   A  
Sbjct: 568 DPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGE 627

Query: 349 LFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCA 408
           L + M+ +GL PD  T   L+K +  A   +DA++L+E MR+     D   Y TL+    
Sbjct: 628 LLETMLRAGLVPDTVTYNTLLKGFCDASRTEDAVDLFEVMRQCGCEPDNATYTTLVGHLV 687

Query: 409 D 409
           D
Sbjct: 688 D 688



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 85/342 (24%), Positives = 159/342 (46%), Gaps = 43/342 (12%)

Query: 198 RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDE 257
           R    + L+E    EMV    + + +TY+ ++    +C   ++AI   E M + G +P+ 
Sbjct: 305 RIDEAYHLLE----EMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNL 360

Query: 258 VTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAF-SVLGKMFGESGDYDGIRYVLQ 316
            TY+++LD++ K  +VE    L    +  G  P+ +++ +V+  +   +  ++G+  +L+
Sbjct: 361 FTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGV-LLLE 419

Query: 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
           +M S    P++V +NT+++AM K  +  +A  LF+ + ESG TP+  T  +L+    K+R
Sbjct: 420 QMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSR 479

Query: 377 WAKDALELWERM-RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYS 435
               A  L   M R+     D I YNT+++       V+ A +LF  M LSD   PD+ +
Sbjct: 480 RFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQM-LSDGLAPDDVT 538

Query: 436 YTAMLN----------------------------IYGS-------GGNVDNAIELFEEMS 460
           Y+ +++                             YG+        GN+D A+E+ + + 
Sbjct: 539 YSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLL 598

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
             G   +V+  +  I  L K  R+     +    +  G+ PD
Sbjct: 599 SKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPD 640



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 147/335 (43%), Gaps = 38/335 (11%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           QL + M+      + ++Y+T+I    +     E +   E+M     +PD VT++ I+D  
Sbjct: 381 QLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAM 440

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEM-KSLGVQPN 326
            K+ +V+    L+     SG  P+ + ++ L     +S  +D   Y+L+EM +  G  P+
Sbjct: 441 CKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPD 500

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
           ++ YNT+++ + K+ +   A  LF +M+  GL PD+ T + +I    K R+  +A  + E
Sbjct: 501 IITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLE 560

Query: 387 RMRENKWPMDFILYNTLLN-MCA---------------------DI-------------G 411
            M +N +    I Y TL++  C                      D+             G
Sbjct: 561 LMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRG 620

Query: 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC 471
            + +A  L E M L     PD  +Y  +L  +      ++A++LFE M + G   +    
Sbjct: 621 RLRQAGELLETM-LRAGLVPDTVTYNTLLKGFCDASRTEDAVDLFEVMRQCGCEPDNATY 679

Query: 472 TCLIQCLGKARRIDDLVRVFGVS-IDRGVKPDDRL 505
           T L+  L   +   DL+     S +D G K +  L
Sbjct: 680 TTLVGHLVDKKSYKDLLAEVSKSMVDTGFKLNHEL 714


>gi|356567150|ref|XP_003551784.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Glycine max]
          Length = 875

 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 129/569 (22%), Positives = 244/569 (42%), Gaps = 70/569 (12%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITC---AKRCNLFDEAIEWFE 246
           YN  +K+     ++QL   L  EM    I  D  TY+T +       R +L   AI+   
Sbjct: 298 YNSLLKTCVAKGRWQLCRDLLAEMEWKGIGRDVYTYNTYVDALCKGGRMDLARHAID--V 355

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
            M    ++P+ VTYS ++  Y+K+ + E+ L++Y+       + D ++++ L  ++   G
Sbjct: 356 EMPAKNILPNVVTYSTLMAGYSKAERFEDALNIYDEMKHLLIRLDRVSYNTLVGLYANLG 415

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
            ++      +EM+  G++ ++V YN L+E  G+  K    R LFDEM    + P++ T +
Sbjct: 416 WFEEAVGKFKEMECCGIKNDVVTYNALIEGYGRHNKYVEVRKLFDEMKARRIYPNDLTYS 475

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
            LIKIY K R   +A++++  +++     D + Y+ L++     GL+E + RL  D+   
Sbjct: 476 TLIKIYTKGRMYAEAMDVYRELKQEGMKTDVVFYSALIDALCKNGLIESSLRLL-DVMTE 534

Query: 427 DYCKPDNYSYTAMLNIYGSG--------------------------------------GN 448
              +P+  +Y ++++ +  G                                      GN
Sbjct: 535 KGSRPNVVTYNSIIDAFRIGQQLPALECAVDTSFQANEHQIKPSSSRLSAGNFQDQKTGN 594

Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD--LVRVFGVSIDRGVKPDDRLC 506
            D  +++ E+++              +    K  R D   LV++F    +  +KP+    
Sbjct: 595 NDEIMKMLEQLAAEKAG---------LMKKDKRSRQDSFYLVQIFQKMQEMEIKPNVVTF 645

Query: 507 GCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLN-LIEDNSTGFENIKEEFRNVIKDTE 565
             +L+  S CET +D  K++  L   +  +    + L+  +  G  N  +   + ++  +
Sbjct: 646 SAILNACSCCETFQDASKLLDALCMFDSHVYGVAHGLLMGHGQGLWNQAQTLFDELEHLD 705

Query: 566 VDARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWS---LDVRSLSV 622
                 F N L D+  +      A  ++  G    ++ G        WS   LD+   S 
Sbjct: 706 SSTASAFYNALTDMLWHFGQKLGAQTVVIEGRNRNVWKG-------GWSTECLDLHLTSC 758

Query: 623 GAAQTALEEWMWTLAKIVLREEVLPQLFLAETGTGTHKFSQGLAT---AFASHVNKLAAP 679
           GAA   +  W+  L   V   +  P +    TG G H    G  T   A  + +N + AP
Sbjct: 759 GAACAMVHTWLLELRTTVFGGQKPPPILSILTGWGKHSKVVGNGTLRKAVEALLNGIGAP 818

Query: 680 FRQSEGKAGCFVATREDLVSWVQARPSSI 708
           F+ SE   G F +   ++ +W++ +PS++
Sbjct: 819 FQISECNLGRFKSEGPEVTAWLR-QPSTL 846



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 99/347 (28%), Positives = 169/347 (48%), Gaps = 11/347 (3%)

Query: 203 FQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSA 262
             L E+  N    N +     ++S +I+   R + F EA+     M   GL P+ VTY+A
Sbjct: 209 LNLFEESRNRGYGNTV----YSFSAMISALGRNDCFSEAVSLLRSMGNFGLEPNLVTYNA 264

Query: 263 ILDVYAKSG-KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
           I+D  AK     E V+   E  +A+G  PD + ++ L K     G +   R +L EM+  
Sbjct: 265 IIDAGAKGELPFEIVVKFLEEMIAAGCLPDRLTYNSLLKTCVAKGRWQLCRDLLAEMEWK 324

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFD-EMVESGLTPDEKTLTALIKIYGKARWAKD 380
           G+  ++  YNT ++A+ K G+  LAR   D EM    + P+  T + L+  Y KA   +D
Sbjct: 325 GIGRDVYTYNTYVDALCKGGRMDLARHAIDVEMPAKNILPNVVTYSTLMAGYSKAERFED 384

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
           AL +++ M+     +D + YNTL+ + A++G  EEA   F++M+     K D  +Y A++
Sbjct: 385 ALNIYDEMKHLLIRLDRVSYNTLVGLYANLGWFEEAVGKFKEMECCG-IKNDVVTYNALI 443

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
             YG         +LF+EM    +  N +  + LI+   K R   + + V+      G+K
Sbjct: 444 EGYGRHNKYVEVRKLFDEMKARRIYPNDLTYSTLIKIYTKGRMYAEAMDVYRELKQEGMK 503

Query: 501 PDDRLCGCLLSVV---SLCETSEDVGKVITCLQQANPKLVAFLNLIE 544
            D      L+  +    L E+S  +  V+T  + + P +V + ++I+
Sbjct: 504 TDVVFYSALIDALCKNGLIESSLRLLDVMT-EKGSRPNVVTYNSIID 549



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/291 (22%), Positives = 124/291 (42%), Gaps = 38/291 (13%)

Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
           S ++    +  K+E  L+L+E     G+     +FS +    G +  +     +L+ M +
Sbjct: 193 SNMIRTLGRLKKIELALNLFEESRNRGYGNTVYSFSAMISALGRNDCFSEAVSLLRSMGN 252

Query: 321 LGVQPNLVVYNTLLEAMGKAGKP-GLARSLFDEMVESGLTPDEKTLTALIKI-YGKARWA 378
            G++PNLV YN +++A  K   P  +     +EM+ +G  PD  T  +L+K    K RW 
Sbjct: 253 FGLEPNLVTYNAIIDAGAKGELPFEIVVKFLEEMIAAGCLPDRLTYNSLLKTCVAKGRWQ 312

Query: 379 ------------------------KDALELWERMRENKWPMD-----------FILYNTL 403
                                    DAL    RM   +  +D            + Y+TL
Sbjct: 313 LCRDLLAEMEWKGIGRDVYTYNTYVDALCKGGRMDLARHAIDVEMPAKNILPNVVTYSTL 372

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           +   +     E+A  ++++MK     + D  SY  ++ +Y + G  + A+  F+EM   G
Sbjct: 373 MAGYSKAERFEDALNIYDEMK-HLLIRLDRVSYNTLVGLYANLGWFEEAVGKFKEMECCG 431

Query: 464 VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVS 514
           +  +V+    LI+  G+  +  ++ ++F     R + P+D     L+ + +
Sbjct: 432 IKNDVVTYNALIEGYGRHNKYVEVRKLFDEMKARRIYPNDLTYSTLIKIYT 482



 Score = 43.9 bits (102), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 77/191 (40%), Gaps = 1/191 (0%)

Query: 333 LLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENK 392
           ++  +G+  K  LA +LF+E    G      + +A+I   G+     +A+ L   M    
Sbjct: 195 MIRTLGRLKKIELALNLFEESRNRGYGNTVYSFSAMISALGRNDCFSEAVSLLRSMGNFG 254

Query: 393 WPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNA 452
              + + YN +++  A   L  E    F +  ++  C PD  +Y ++L    + G     
Sbjct: 255 LEPNLVTYNAIIDAGAKGELPFEIVVKFLEEMIAAGCLPDRLTYNSLLKTCVAKGRWQLC 314

Query: 453 IELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSI-DRGVKPDDRLCGCLLS 511
            +L  EM   G+  +V      +  L K  R+D       V +  + + P+      L++
Sbjct: 315 RDLLAEMEWKGIGRDVYTYNTYVDALCKGGRMDLARHAIDVEMPAKNILPNVVTYSTLMA 374

Query: 512 VVSLCETSEDV 522
             S  E  ED 
Sbjct: 375 GYSKAERFEDA 385


>gi|356562783|ref|XP_003549648.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Glycine max]
          Length = 859

 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 112/459 (24%), Positives = 210/459 (45%), Gaps = 11/459 (2%)

Query: 199 FGR--QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPD 256
           FG+  + + + +L  EM S     D  +Y+ ++          EA++ F +M   G + +
Sbjct: 287 FGKLNRLEKVSELLREMESGGNLPDITSYNVLLEAYAELGSIKEAMDVFRQMQAAGCVAN 346

Query: 257 EVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQ 316
             TYS +L++Y K G+ ++V  ++     S   PD   +++L ++FGE G +  +  +  
Sbjct: 347 AATYSVLLNLYGKHGRYDDVRDIFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFH 406

Query: 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
           +M    V+PN+  Y  L+ A GK G    A+ +   M E G+ P  K  T +I+ +G+A 
Sbjct: 407 DMVEENVEPNMETYEGLIFACGKGGLYEDAKKILLHMNEKGIVPSSKAYTGVIEAFGQAA 466

Query: 377 WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY 436
             ++AL ++  M E         YN+ ++  A  GL +EAE +   M  S   K D +S+
Sbjct: 467 LYEEALVVFNTMNEVGSNPTVETYNSFIHAFARGGLYKEAEAILSRMNESG-LKRDVHSF 525

Query: 437 TAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496
             ++  +  GG  + A++ + EM +     N +    ++     A  +D+    F     
Sbjct: 526 NGVIKAFRQGGQYEEAVKSYVEMEKANCEPNELTLEVVLSVYCSAGLVDESEEQFQEIKA 585

Query: 497 RGVKPDDRLCGCLLSVV-----SLCETSEDVGKVITC-LQQANPKLVAFLNLIEDNSTGF 550
            G+ P   +C CL+  +      L +    + ++IT  +   +  +   +    D+ + +
Sbjct: 586 SGILPS-VMCYCLMLALYAKNDRLNDAYNLIDEMITMRVSDIHQGIGQMIKGDFDDESNW 644

Query: 551 ENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTL 610
           + ++  F  +  +      R F N L++        ERA  +L   +  GL+P L  K+ 
Sbjct: 645 QIVEYVFDKLNSEGCGLGMR-FYNALLEALWWMFQRERAARVLNEASKRGLFPELFRKSK 703

Query: 611 DEWSLDVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQL 649
             WS+DV  +S G A TAL  W+  + ++      LP+L
Sbjct: 704 LVWSVDVHRMSEGGALTALSVWLNNMHEMSRTGNDLPEL 742



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 153/337 (45%), Gaps = 3/337 (0%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           +  S    N +K + + P    +  V     R G  ++ +  L  EM    I+ D ITY+
Sbjct: 187 FHASLELLNGMKQERVSPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDVITYN 246

Query: 227 TII-TCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVA 285
           T++  CA R  L DEA   F  M ++G++PD  TYS ++  + K  ++E+V  L     +
Sbjct: 247 TLLGACAHR-GLGDEAEMVFRTMNESGIVPDINTYSYLVQTFGKLNRLEKVSELLREMES 305

Query: 286 SGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGL 345
            G  PD  +++VL + + E G       V ++M++ G   N   Y+ LL   GK G+   
Sbjct: 306 GGNLPDITSYNVLLEAYAELGSIKEAMDVFRQMQAAGCVANAATYSVLLNLYGKHGRYDD 365

Query: 346 ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405
            R +F EM  S   PD  T   LI+++G+  + K+ + L+  M E     +   Y  L+ 
Sbjct: 366 VRDIFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIF 425

Query: 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
            C   GL E+A+++   M       P + +YT ++  +G     + A+ +F  M+E+G  
Sbjct: 426 ACGKGGLYEDAKKILLHMNEKGIV-PSSKAYTGVIEAFGQAALYEEALVVFNTMNEVGSN 484

Query: 466 INVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
             V      I    +     +   +     + G+K D
Sbjct: 485 PTVETYNSFIHAFARGGLYKEAEAILSRMNESGLKRD 521



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 147/306 (48%), Gaps = 4/306 (1%)

Query: 199 FGR--QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNL-FDEAIEWFERMYKTGLMP 255
           +GR  QF    +L N M    +    +TY+T+I    R  L ++  +  F  M   G+ P
Sbjct: 181 YGRNGQFHASLELLNGMKQERVSPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQP 240

Query: 256 DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVL 315
           D +TY+ +L   A  G  +E   ++     SG  PD   +S L + FG+    + +  +L
Sbjct: 241 DVITYNTLLGACAHRGLGDEAEMVFRTMNESGIVPDINTYSYLVQTFGKLNRLEKVSELL 300

Query: 316 QEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA 375
           +EM+S G  P++  YN LLEA  + G    A  +F +M  +G   +  T + L+ +YGK 
Sbjct: 301 REMESGGNLPDITSYNVLLEAYAELGSIKEAMDVFRQMQAAGCVANAATYSVLLNLYGKH 360

Query: 376 RWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYS 435
               D  +++  M+ +    D   YN L+ +  + G  +E   LF DM + +  +P+  +
Sbjct: 361 GRYDDVRDIFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDM-VEENVEPNMET 419

Query: 436 YTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSI 495
           Y  ++   G GG  ++A ++   M+E G+  +    T +I+  G+A   ++ + VF    
Sbjct: 420 YEGLIFACGKGGLYEDAKKILLHMNEKGIVPSSKAYTGVIEAFGQAALYEEALVVFNTMN 479

Query: 496 DRGVKP 501
           + G  P
Sbjct: 480 EVGSNP 485



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 71/328 (21%), Positives = 138/328 (42%), Gaps = 39/328 (11%)

Query: 255 PDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYV 314
           P+E  Y+ ++ +  + G +++   +++   ++G       ++ +   +G +G +     +
Sbjct: 134 PNEHIYTIMITLLGREGLLDKCREVFDEMPSNGVARTVYVYTAVINAYGRNGQFHASLEL 193

Query: 315 LQEMKSLGVQPNLVVYNTLLEAMGKAG------------------KPGL----------- 345
           L  MK   V P+++ YNT++ A  + G                  +P +           
Sbjct: 194 LNGMKQERVSPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDVITYNTLLGACA 253

Query: 346 -------ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFI 398
                  A  +F  M ESG+ PD  T + L++ +GK    +   EL   M       D  
Sbjct: 254 HRGLGDEAEMVFRTMNESGIVPDINTYSYLVQTFGKLNRLEKVSELLREMESGGNLPDIT 313

Query: 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458
            YN LL   A++G ++EA  +F  M+ +  C  +  +Y+ +LN+YG  G  D+  ++F E
Sbjct: 314 SYNVLLEAYAELGSIKEAMDVFRQMQAAG-CVANAATYSVLLNLYGKHGRYDDVRDIFLE 372

Query: 459 MSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCET 518
           M       +      LIQ  G+     ++V +F   ++  V+P+      L+        
Sbjct: 373 MKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGL 432

Query: 519 SEDVGKVITCLQQAN--PKLVAFLNLIE 544
            ED  K++  + +    P   A+  +IE
Sbjct: 433 YEDAKKILLHMNEKGIVPSSKAYTGVIE 460



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 110/240 (45%), Gaps = 3/240 (1%)

Query: 295 FSVLGKMFGESGDYD-GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
           F+++ K F + GD+   +R      + +  +PN  +Y  ++  +G+ G     R +FDEM
Sbjct: 103 FALVFKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMITLLGREGLLDKCREVFDEM 162

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
             +G+       TA+I  YG+      +LEL   M++ +     + YNT++N CA  GL 
Sbjct: 163 PSNGVARTVYVYTAVINAYGRNGQFHASLELLNGMKQERVSPSILTYNTVINACARGGLD 222

Query: 414 EEA-ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
            E    LF +M+  +  +PD  +Y  +L      G  D A  +F  M+E G+  ++   +
Sbjct: 223 WEGLLGLFAEMR-HEGIQPDVITYNTLLGACAHRGLGDEAEMVFRTMNESGIVPDINTYS 281

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQA 532
            L+Q  GK  R++ +  +       G  PD      LL   +   + ++   V   +Q A
Sbjct: 282 YLVQTFGKLNRLEKVSELLREMESGGNLPDITSYNVLLEAYAELGSIKEAMDVFRQMQAA 341


>gi|225457536|ref|XP_002272226.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial [Vitis vinifera]
 gi|297745544|emb|CBI40709.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 86/299 (28%), Positives = 144/299 (48%), Gaps = 1/299 (0%)

Query: 216 NEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEE 275
           N +     T   +IT        +EA   FE + + GLMP    Y+A+L  Y K+G +++
Sbjct: 285 NGLSPKTATLVAVITALGNAGRTEEAEAIFEELKEGGLMPRTRAYNALLKGYVKTGSLKD 344

Query: 276 VLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLE 335
             S+      SG+ PD   +S+L   +  +G ++  R VL+EM++ GV+PN  V++ +L 
Sbjct: 345 AESIVSEMERSGFSPDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRILA 404

Query: 336 AMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPM 395
           +    GK   +  +  EM  SG++PD      +I  +GK      AL  ++RMR      
Sbjct: 405 SYRDRGKWQKSFQVLREMRNSGVSPDRHFYNVMIDTFGKCNCLDHALATFDRMRMEGVQP 464

Query: 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIEL 455
           D + +NTL++     G   +AE LFE M+ S  C P   +Y  M+N +G     ++   L
Sbjct: 465 DAVTWNTLIDCHCKSGHHNKAEELFEAMQESG-CSPCTTTYNIMINSFGEQERWEDVKTL 523

Query: 456 FEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVS 514
             +M   G+  NV+  T L+   G++ R  D +    V    G+KP   +   L++  +
Sbjct: 524 LGKMQSQGLLANVVTYTTLVDIYGQSGRFKDAIECLEVMKSVGLKPSSTMYNALINAYA 582



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 90/330 (27%), Positives = 143/330 (43%), Gaps = 2/330 (0%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F  +K   L P  T  YN  +K        +  E + +EM  +    D  TYS +I   
Sbjct: 313 IFEELKEGGLMP-RTRAYNALLKGYVKTGSLKDAESIVSEMERSGFSPDEHTYSLLIDAY 371

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
                ++ A    + M  +G+ P+   +S IL  Y   GK ++   +      SG  PD 
Sbjct: 372 ANAGRWESARIVLKEMEASGVRPNSYVFSRILASYRDRGKWQKSFQVLREMRNSGVSPDR 431

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
             ++V+   FG+    D        M+  GVQP+ V +NTL++   K+G    A  LF+ 
Sbjct: 432 HFYNVMIDTFGKCNCLDHALATFDRMRMEGVQPDAVTWNTLIDCHCKSGHHNKAEELFEA 491

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M ESG +P   T   +I  +G+    +D   L  +M+      + + Y TL+++    G 
Sbjct: 492 MQESGCSPCTTTYNIMINSFGEQERWEDVKTLLGKMQSQGLLANVVTYTTLVDIYGQSGR 551

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
            ++A    E MK S   KP +  Y A++N Y   G  + AI  F  M   G+  +V+   
Sbjct: 552 FKDAIECLEVMK-SVGLKPSSTMYNALINAYAQRGLSEQAINAFRVMRADGLKPSVLVLN 610

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            LI   G+ RR  +   V     +  +KPD
Sbjct: 611 SLINAFGEDRRDAEAFSVLQYMKENDLKPD 640



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 147/306 (48%), Gaps = 9/306 (2%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           W+ +      +++  + P   +F  + + S R   ++Q   Q+  EM ++ +  D   Y+
Sbjct: 377 WESARIVLKEMEASGVRPNSYVFSRI-LASYRDRGKWQKSFQVLREMRNSGVSPDRHFYN 435

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
            +I    +CN  D A+  F+RM   G+ PD VT++ ++D + KSG   +   L+E    S
Sbjct: 436 VMIDTFGKCNCLDHALATFDRMRMEGVQPDAVTWNTLIDCHCKSGHHNKAEELFEAMQES 495

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G  P    ++++   FGE   ++ ++ +L +M+S G+  N+V Y TL++  G++G+   A
Sbjct: 496 GCSPCTTTYNIMINSFGEQERWEDVKTLLGKMQSQGLLANVVTYTTLVDIYGQSGRFKDA 555

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
               + M   GL P      ALI  Y +   ++ A+  +  MR +      ++ N+L+N 
Sbjct: 556 IECLEVMKSVGLKPSSTMYNALINAYAQRGLSEQAINAFRVMRADGLKPSVLVLNSLINA 615

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
             +     EA  + + MK +D  KPD  +YT ++         D    ++EEM+      
Sbjct: 616 FGEDRRDAEAFSVLQYMKEND-LKPDVVTYTTLMKALIRVEKFDKVPAVYEEMT------ 668

Query: 467 NVMGCT 472
            + GCT
Sbjct: 669 -LSGCT 673



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 110/478 (23%), Positives = 191/478 (39%), Gaps = 50/478 (10%)

Query: 170 SYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTII 229
           +Y    W++  NL     + Y++ + +L  GR  +L E     ++S    L  +TY+ +I
Sbjct: 137 AYSLVTWLERHNLCFSYELLYSILIHAL--GRSEKLYEAF---LLSQRQTLTPLTYNALI 191

Query: 230 TCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAIL------------------------- 264
               R +  ++A+    RM + G   D V YS I+                         
Sbjct: 192 GACARNDDLEKALNLMSRMRRDGFPSDFVNYSFIIQSLTRTNKSDSSMLQKIYAEIESDK 251

Query: 265 ---------DV---YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIR 312
                    D+   +AKSG V   +S       +G  P       +    G +G  +   
Sbjct: 252 IELDGQLLNDIIVGFAKSGDVNRAMSFLAMVQGNGLSPKTATLVAVITALGNAGRTEEAE 311

Query: 313 YVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIY 372
            + +E+K  G+ P    YN LL+   K G    A S+  EM  SG +PDE T + LI  Y
Sbjct: 312 AIFEELKEGGLMPRTRAYNALLKGYVKTGSLKDAESIVSEMERSGFSPDEHTYSLLIDAY 371

Query: 373 GKA-RWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
             A RW    + L E       P  ++ ++ +L    D G  +++ ++  +M+ S    P
Sbjct: 372 ANAGRWESARIVLKEMEASGVRPNSYV-FSRILASYRDRGKWQKSFQVLREMRNSG-VSP 429

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           D + Y  M++ +G    +D+A+  F+ M   GV  + +    LI C  K+   +    +F
Sbjct: 430 DRHFYNVMIDTFGKCNCLDHALATFDRMRMEGVQPDAVTWNTLIDCHCKSGHHNKAEELF 489

Query: 492 GVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAFLNLIE--DNS 547
               + G  P       +++     E  EDV  ++  +Q       +V +  L++    S
Sbjct: 490 EAMQESGCSPCTTTYNIMINSFGEQERWEDVKTLLGKMQSQGLLANVVTYTTLVDIYGQS 549

Query: 548 TGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGL 605
             F++  E    V+K   +       N LI+    R L+E+A     +    GL P +
Sbjct: 550 GRFKDAIECL-EVMKSVGLKPSSTMYNALINAYAQRGLSEQAINAFRVMRADGLKPSV 606



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 93/182 (51%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
           T  YN+ + S     +++ ++ L  +M S  +  + +TY+T++    +   F +AIE  E
Sbjct: 501 TTTYNIMINSFGEQERWEDVKTLLGKMQSQGLLANVVTYTTLVDIYGQSGRFKDAIECLE 560

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
            M   GL P    Y+A+++ YA+ G  E+ ++ +    A G KP  +  + L   FGE  
Sbjct: 561 VMKSVGLKPSSTMYNALINAYAQRGLSEQAINAFRVMRADGLKPSVLVLNSLINAFGEDR 620

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
                  VLQ MK   ++P++V Y TL++A+ +  K     ++++EM  SG TPD K   
Sbjct: 621 RDAEAFSVLQYMKENDLKPDVVTYTTLMKALIRVEKFDKVPAVYEEMTLSGCTPDRKARA 680

Query: 367 AL 368
            L
Sbjct: 681 ML 682


>gi|302769103|ref|XP_002967971.1| hypothetical protein SELMODRAFT_145138 [Selaginella moellendorffii]
 gi|300164709|gb|EFJ31318.1| hypothetical protein SELMODRAFT_145138 [Selaginella moellendorffii]
          Length = 1354

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 121/579 (20%), Positives = 238/579 (41%), Gaps = 41/579 (7%)

Query: 164  LKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNI 223
            LK WQ +   F  ++    F   T  Y+  + +      F+   +  + MV+  ++ +  
Sbjct: 648  LKLWQNAEIVFRDLQRHG-FAGNTSAYSALLSAYAETGNFERATRALDNMVAAGLQPNAA 706

Query: 224  TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
              + ++    R     E  E+++R+ + G+ P+  T+  I   ++++G +EE  S+Y + 
Sbjct: 707  CANYVLEAFGRAGKAKELSEFYQRLPEMGITPNSRTFVVIFHAFSRNGNLEEARSMYRQM 766

Query: 284  VASGWKPDPIAFSVLGKMFGES-----------------------------------GDY 308
              +G+ P    F  L  ++                                      G Y
Sbjct: 767  REAGFSPSIQVFKALLALYSRETVEIDAEELVKDIKKAGLELDMDIYNHMISLYSKLGSY 826

Query: 309  DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
                 V + M+ +G  P+   +NTL+    +      A++L  EM+++G  P+  T T L
Sbjct: 827  RKAALVFKGMQEIGCSPDATTFNTLIMLYSRNQMVQEAQALLREMIKTGNAPNISTYTTL 886

Query: 369  IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428
            I  YG+ +  +DA  +++ + E     D   YN ++N+    G   + E + E MK +D 
Sbjct: 887  ISAYGRLQAYEDAELVFKSIAETGCKPDATAYNVMINVYRKAGEHRKIEEVIEQMK-ADG 945

Query: 429  CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLV 488
             +P   +   +++ YG GG    A E+ E + E+G++ + +  T +I      +     V
Sbjct: 946  FEPSLTTIHMLMDSYGKGGATGKAEEVLETLPEIGMSPDAIHYTSIINSHLNNKDYLSAV 1005

Query: 489  RVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNST 548
                   D  V+P      C +   S+CE S     ++  L +A   L   L L+ + + 
Sbjct: 1006 IWLRKMTDACVRPTHVTITCFVGAASVCERSSHALMLLKALSEAGFSLP--LRLMTECTP 1063

Query: 549  GFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNK 608
                  ++  + ++++  +A +   N L+D+         A  +  +     +Y  +  +
Sbjct: 1064 KVVQDMQDIFDQLQESGPEACQGVVNVLMDLLWAFRQCATAALVFAVAIESNIYTQVLAR 1123

Query: 609  TLDE-WSLDVRSLSVGAAQTALEEWMWTLAKIVLR-EEVLPQLFLAETGTGTHKFSQGLA 666
              D  W  D R LS GAA  AL  W+  +    L+   V P+    + G+        ++
Sbjct: 1124 VKDRNWGADFRRLSPGAALVALILWLDQMQDASLQGSPVPPKSIQIDIGSSKLNNQASVS 1183

Query: 667  TAFASHVNKLAAPFRQSEGKAGCFVATREDLVSWVQARP 705
                +H+ ++ +PF  S+ +AG  VA    L  W++  P
Sbjct: 1184 NTIKTHLWQMGSPFLPSKTRAGVLVAKSHALCMWLKESP 1222



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 142/284 (50%), Gaps = 4/284 (1%)

Query: 259 TYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGI-RYVLQE 317
            Y++++ VYA+ G    V  L  R    G +PD + F+++ K     G  +G+   +LQ+
Sbjct: 116 VYNSLMSVYARHGDWNSVQQLLCRMQDRGCRPDLVTFNIVIKARTRGGMQEGLASSLLQD 175

Query: 318 MKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARW 377
           + + G++P+ + YNTL+ A     +   A  +F+EM   G  PD  T  A+I +YG+A  
Sbjct: 176 VYAAGLRPDTITYNTLISACSLNNRLSDAILIFEEMQRQGCDPDIWTYNAMISVYGRAGR 235

Query: 378 AKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYT 437
            + A  ++  M+E  +  D + YN++L+  A  G +EE ER+   M     C  D  +Y 
Sbjct: 236 VEAASSIFRIMQEQGFTPDAVTYNSVLHAFARDGRIEEVERI-RGMMRDARCSSDEITYN 294

Query: 438 AMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDR 497
            M+++YG  G    A EL+ +M E G   + +  T LI  LGKA  +++   +F   +  
Sbjct: 295 TMIHMYGKAGMHRKAEELYVQMKEEGRCPDSVTFTVLIDTLGKAGFVNEAAAMFEDMLKS 354

Query: 498 GVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAF 539
            V+P  +    ++   +  +   D     +C+ +A   P L+A+
Sbjct: 355 QVRPTLQAFSAMICAYAKADMFSDAEHTYSCMLRAGVRPDLLAY 398



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 166/353 (47%), Gaps = 5/353 (1%)

Query: 115 YSYNPRVRDLKL-FARKLNDCDNTEEAFLRAITEIPHQPTRENALLILNSLKF-WQKSYF 172
           Y+ NPR+  + L    + N     +E F RA + I +     N+L+ + +    W     
Sbjct: 76  YAPNPRMLAVMLSVLGRANQPGLAQELFDRAESSIGNCVQVYNSLMSVYARHGDWNSVQQ 135

Query: 173 FFNWIKSQNLFPMETIFYNVTMKS-LRFGRQFQLIEQLANEMVSNEIELDNITYSTIITC 231
               ++ +   P + + +N+ +K+  R G Q  L   L  ++ +  +  D ITY+T+I+ 
Sbjct: 136 LLCRMQDRGCRP-DLVTFNIVIKARTRGGMQEGLASSLLQDVYAAGLRPDTITYNTLISA 194

Query: 232 AKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291
               N   +AI  FE M + G  PD  TY+A++ VY ++G+VE   S++      G+ PD
Sbjct: 195 CSLNNRLSDAILIFEEMQRQGCDPDIWTYNAMISVYGRAGRVEAASSIFRIMQEQGFTPD 254

Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
            + ++ +   F   G  + +  +   M+      + + YNT++   GKAG    A  L+ 
Sbjct: 255 AVTYNSVLHAFARDGRIEEVERIRGMMRDARCSSDEITYNTMIHMYGKAGMHRKAEELYV 314

Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411
           +M E G  PD  T T LI   GKA +  +A  ++E M +++       ++ ++   A   
Sbjct: 315 QMKEEGRCPDSVTFTVLIDTLGKAGFVNEAAAMFEDMLKSQVRPTLQAFSAMICAYAKAD 374

Query: 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
           +  +AE  +  M L    +PD  +Y+ ML+++      +  I L++ M   G+
Sbjct: 375 MFSDAEHTYSCM-LRAGVRPDLLAYSVMLDVFFKAEMPEKCIILYKAMVGSGL 426



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/358 (23%), Positives = 160/358 (44%), Gaps = 9/358 (2%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQL---ANEMVSNEIELDNI 223
           WQ++   +  +     +        V +  L    Q  L ++L   A   + N +++   
Sbjct: 60  WQRALELYECLNVARWYAPNPRMLAVMLSVLGRANQPGLAQELFDRAESSIGNCVQV--- 116

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS-LYER 282
            Y+++++   R   ++   +   RM   G  PD VT++ ++    + G  E + S L + 
Sbjct: 117 -YNSLMSVYARHGDWNSVQQLLCRMQDRGCRPDLVTFNIVIKARTRGGMQEGLASSLLQD 175

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
             A+G +PD I ++ L      +        + +EM+  G  P++  YN ++   G+AG+
Sbjct: 176 VYAAGLRPDTITYNTLISACSLNNRLSDAILIFEEMQRQGCDPDIWTYNAMISVYGRAGR 235

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
              A S+F  M E G TPD  T  +++  + +    ++   +   MR+ +   D I YNT
Sbjct: 236 VEAASSIFRIMQEQGFTPDAVTYNSVLHAFARDGRIEEVERIRGMMRDARCSSDEITYNT 295

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
           +++M    G+  +AE L+  MK    C PD+ ++T +++  G  G V+ A  +FE+M + 
Sbjct: 296 MIHMYGKAGMHRKAEELYVQMKEEGRC-PDSVTFTVLIDTLGKAGFVNEAAAMFEDMLKS 354

Query: 463 GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSE 520
            V   +   + +I    KA    D    +   +  GV+PD      +L V    E  E
Sbjct: 355 QVRPTLQAFSAMICAYAKADMFSDAEHTYSCMLRAGVRPDLLAYSVMLDVFFKAEMPE 412



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/371 (23%), Positives = 164/371 (44%), Gaps = 4/371 (1%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           +     M   R G  F   E L + + + E++ D+  +  II    +  L+  A   F  
Sbjct: 602 VLQTAVMCYCRKGFAFVAHELLIDCLHAFEVK-DSAMHVAIIASYGKLKLWQNAEIVFRD 660

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           + + G   +   YSA+L  YA++G  E      +  VA+G +P+    + + + FG +G 
Sbjct: 661 LQRHGFAGNTSAYSALLSAYAETGNFERATRALDNMVAAGLQPNAACANYVLEAFGRAGK 720

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
              +    Q +  +G+ PN   +  +  A  + G    ARS++ +M E+G +P  +   A
Sbjct: 721 AKELSEFYQRLPEMGITPNSRTFVVIFHAFSRNGNLEEARSMYRQMREAGFSPSIQVFKA 780

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           L+ +Y +     DA EL + +++    +D  +YN ++++ + +G   +A  +F+ M+   
Sbjct: 781 LLALYSRETVEIDAEELVKDIKKAGLELDMDIYNHMISLYSKLGSYRKAALVFKGMQ-EI 839

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
            C PD  ++  ++ +Y     V  A  L  EM + G A N+   T LI   G+ +  +D 
Sbjct: 840 GCSPDATTFNTLIMLYSRNQMVQEAQALLREMIKTGNAPNISTYTTLISAYGRLQAYEDA 899

Query: 488 VRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAFLNLIED 545
             VF    + G KPD      +++V         + +VI  ++     P L     L++ 
Sbjct: 900 ELVFKSIAETGCKPDATAYNVMINVYRKAGEHRKIEEVIEQMKADGFEPSLTTIHMLMDS 959

Query: 546 NSTGFENIKEE 556
              G    K E
Sbjct: 960 YGKGGATGKAE 970



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 97/200 (48%), Gaps = 1/200 (0%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F  ++ Q   P + + YN  + +     + + +E++   M       D ITY+T+I   
Sbjct: 242 IFRIMQEQGFTP-DAVTYNSVLHAFARDGRIEEVERIRGMMRDARCSSDEITYNTMIHMY 300

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +  +  +A E + +M + G  PD VT++ ++D   K+G V E  +++E  + S  +P  
Sbjct: 301 GKAGMHRKAEELYVQMKEEGRCPDSVTFTVLIDTLGKAGFVNEAAAMFEDMLKSQVRPTL 360

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
            AFS +   + ++  +    +    M   GV+P+L+ Y+ +L+   KA  P     L+  
Sbjct: 361 QAFSAMICAYAKADMFSDAEHTYSCMLRAGVRPDLLAYSVMLDVFFKAEMPEKCIILYKA 420

Query: 353 MVESGLTPDEKTLTALIKIY 372
           MV SGL P+      +++++
Sbjct: 421 MVGSGLKPELSVYAIMVRVF 440



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 68/327 (20%), Positives = 146/327 (44%), Gaps = 14/327 (4%)

Query: 106  SLQRQKRSTYSYNPRVRDLK----LFARKLNDCDNTE--EAFLRAITEIPHQPTRENALL 159
            S+ RQ R    ++P ++  K    L++R+  + D  E  +   +A  E+       + + 
Sbjct: 761  SMYRQMREA-GFSPSIQVFKALLALYSRETVEIDAEELVKDIKKAGLEL-DMDIYNHMIS 818

Query: 160  ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIE 219
            + + L  ++K+   F  ++     P  T F  + M   R  +  Q  + L  EM+     
Sbjct: 819  LYSKLGSYRKAALVFKGMQEIGCSPDATTFNTLIMLYSR-NQMVQEAQALLREMIKTGNA 877

Query: 220  LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
             +  TY+T+I+   R   +++A   F+ + +TG  PD   Y+ +++VY K+G+  ++  +
Sbjct: 878  PNISTYTTLISAYGRLQAYEDAELVFKSIAETGCKPDATAYNVMINVYRKAGEHRKIEEV 937

Query: 280  YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
             E+  A G++P      +L   +G+ G       VL+ +  +G+ P+ + Y +++ +   
Sbjct: 938  IEQMKADGFEPSLTTIHMLMDSYGKGGATGKAEEVLETLPEIGMSPDAIHYTSIINSHLN 997

Query: 340  AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
                  A     +M ++ + P   T+T  +        +  AL L + + E      F L
Sbjct: 998  NKDYLSAVIWLRKMTDACVRPTHVTITCFVGAASVCERSSHALMLLKALSE----AGFSL 1053

Query: 400  YNTLLNMCADIGLVEEAERLFEDMKLS 426
               L+  C    +V++ + +F+ ++ S
Sbjct: 1054 PLRLMTECTP-KVVQDMQDIFDQLQES 1079



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 99/209 (47%), Gaps = 12/209 (5%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLM------PDEVTYSAILDVYAKSGKVE 274
           D +TY++++    R    D  IE  ER+   G+M       DE+TY+ ++ +Y K+G   
Sbjct: 254 DAVTYNSVLHAFAR----DGRIEEVERI--RGMMRDARCSSDEITYNTMIHMYGKAGMHR 307

Query: 275 EVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLL 334
           +   LY +    G  PD + F+VL    G++G  +    + ++M    V+P L  ++ ++
Sbjct: 308 KAEELYVQMKEEGRCPDSVTFTVLIDTLGKAGFVNEAAAMFEDMLKSQVRPTLQAFSAMI 367

Query: 335 EAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWP 394
            A  KA     A   +  M+ +G+ PD    + ++ ++ KA   +  + L++ M  +   
Sbjct: 368 CAYAKADMFSDAEHTYSCMLRAGVRPDLLAYSVMLDVFFKAEMPEKCIILYKAMVGSGLK 427

Query: 395 MDFILYNTLLNMCADIGLVEEAERLFEDM 423
            +  +Y  ++ +      + E E L ++M
Sbjct: 428 PELSVYAIMVRVFYQKSSLAEIENLSKEM 456


>gi|449469490|ref|XP_004152453.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Cucumis sativus]
          Length = 864

 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 137/572 (23%), Positives = 251/572 (43%), Gaps = 34/572 (5%)

Query: 107 LQRQKRSTYSYNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTRENALLILNSL-- 164
           L+R KR   S N    +  + A    D D   E  L    E+ H+  + + L+  N+L  
Sbjct: 206 LERMKRERVSPNILTYNTVINACARGDLD--WEGLLGLFAEMRHEGVQPD-LVTYNTLLS 262

Query: 165 -----KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIE 219
                    ++   F  +    + P  T +  +     + G+  + +  L  EM S    
Sbjct: 263 ACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGK-LEKVAMLLKEMESEGYL 321

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
            D  +Y+ +I    +     EA++ F++M   G +P+  TYS +L++Y K G+ ++V  L
Sbjct: 322 PDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRYDDVREL 381

Query: 280 YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
           + +   S  +PD   +++L ++FGE G +  +  +  ++    + PN+  Y  L+ A GK
Sbjct: 382 FLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVDENIDPNMETYEGLVFACGK 441

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
            G    A+ +   M   G+ P  K  + LI+ YG+A    +AL  +  M E         
Sbjct: 442 GGLHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQAALYDEALVAFNTMNEVGSKSTIDT 501

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNY-SYTAMLNIYGSGGNVDNAIELFEE 458
           YN+L++  A  GL +E E +   M+  +Y    N  S++ ++  Y   G  + AI+ F E
Sbjct: 502 YNSLIHTFARGGLYKEFEAILSRMR--EYGISRNAKSFSGIIEGYRQSGQYEEAIKAFVE 559

Query: 459 MSELGVAIN------VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSV 512
           M ++   ++      V+G  C       A  +D+    F      G+ P   LC C++  
Sbjct: 560 MEKMRCELDEQTLEGVLGVYCF------AGLVDESKEQFIEIKASGILP-SVLCYCMMLA 612

Query: 513 VSLC-----ETSEDVGKVI-TCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEV 566
           V        + SE + ++I T +   +  +   +    D+ + ++ ++  F  +  +   
Sbjct: 613 VYAKNGRWDDASELLDEMIKTRVSSIHQVIGQMIKGDYDDDSNWQMVEYVFDKLNAEGCG 672

Query: 567 DARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQ 626
              R F N L++         RA  +L   T  GL+P L  ++   WS+DV  +  G A 
Sbjct: 673 FGMR-FYNTLLEALWWLGQKGRAARVLTEATKRGLFPELFRQSKLVWSVDVHRMWEGGAY 731

Query: 627 TALEEWMWTLAKIVLREEVLPQLFLAETGTGT 658
           TA+  W+  + ++++  E LPQL     G G+
Sbjct: 732 TAVSLWVNKMNEMLMDGEDLPQLAAVVVGRGS 763



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 100/382 (26%), Positives = 171/382 (44%), Gaps = 41/382 (10%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           WQ+S   F +++ Q                         I    NE +          Y+
Sbjct: 128 WQRSLRLFKYMQRQ-------------------------IWCKPNEHI----------YT 152

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
            II+   R  L ++  E F+ M   G++    +Y+A+++ Y ++G+ E  L L ER    
Sbjct: 153 IIISLLGREGLLEKCSEIFDEMASQGVIRSVFSYTALINAYGRNGQYETSLELLERMKRE 212

Query: 287 GWKPDPIAF-SVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGL 345
              P+ + + +V+        D++G+  +  EM+  GVQP+LV YNTLL A    G    
Sbjct: 213 RVSPNILTYNTVINACARGDLDWEGLLGLFAEMRHEGVQPDLVTYNTLLSACAARGLGDE 272

Query: 346 ARSLFDEMVESGLTPDEKTLTALIKIYGK-ARWAKDALELWERMRENKWPMDFILYNTLL 404
           A  +F  M+E G+ P+  T + +++ +GK  +  K A+ L E   E   P D   YN L+
Sbjct: 273 AEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKVAMLLKEMESEGYLP-DISSYNVLI 331

Query: 405 NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
              A +G ++EA  +F+ M+ +  C P+  +Y+ +LN+YG  G  D+  ELF +M E   
Sbjct: 332 EAHAKLGSIKEAMDVFKQMQAAG-CVPNASTYSILLNLYGKHGRYDDVRELFLQMKESSA 390

Query: 465 AINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGK 524
             +      LI+  G+     ++V +F   +D  + P+      L+         ED  K
Sbjct: 391 EPDATTYNILIRVFGEGGYFKEVVTLFHDLVDENIDPNMETYEGLVFACGKGGLHEDAKK 450

Query: 525 VITCLQQAN--PKLVAFLNLIE 544
           ++  +      P   A+  LIE
Sbjct: 451 ILFHMNGKGIVPSSKAYSGLIE 472



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 80/350 (22%), Positives = 145/350 (41%), Gaps = 43/350 (12%)

Query: 295 FSVLGKMFGESGDYD-GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
           FS++ K F   GD+   +R      + +  +PN  +Y  ++  +G+ G       +FDEM
Sbjct: 115 FSLVFKEFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKCSEIFDEM 174

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCA--DI- 410
              G+     + TALI  YG+    + +LEL ERM+  +   + + YNT++N CA  D+ 
Sbjct: 175 ASQGVIRSVFSYTALINAYGRNGQYETSLELLERMKRERVSPNILTYNTVINACARGDLD 234

Query: 411 ---------------------------------GLVEEAERLFEDMKLSDYCKPDNYSYT 437
                                            GL +EAE +F+ M +     P+  +Y+
Sbjct: 235 WEGLLGLFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTM-IEGGIVPEITTYS 293

Query: 438 AMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDR 497
            ++  +G  G ++    L +EM   G   ++     LI+   K   I + + VF      
Sbjct: 294 YIVETFGKLGKLEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAA 353

Query: 498 GVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ--ANPKLVAFLNLIEDNSTG--FENI 553
           G  P+      LL++       +DV ++   +++  A P    +  LI     G  F+ +
Sbjct: 354 GCVPNASTYSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEV 413

Query: 554 KEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYP 603
              F +++ D  +D        L+  C    L+E A ++L+     G+ P
Sbjct: 414 VTLFHDLV-DENIDPNMETYEGLVFACGKGGLHEDAKKILFHMNGKGIVP 462


>gi|334184106|ref|NP_178323.3| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546751|sp|P0C894.1|PP143_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g02150
 gi|330250459|gb|AEC05553.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 761

 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/348 (26%), Positives = 167/348 (47%), Gaps = 16/348 (4%)

Query: 170 SYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELD--NITYST 227
           ++ FF W  ++N F      Y +    L   R +     +  EMV ++ + D  ++ +ST
Sbjct: 125 AFKFFKWSMTRNGFKHSVESYCIVAHILFCARMYYDANSVLKEMVLSKADCDVFDVLWST 184

Query: 228 IITCAKRCNLFD-------------EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVE 274
              C     +FD             EAI+ F +M +  + P   + + +L  +AK GK +
Sbjct: 185 RNVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTD 244

Query: 275 EVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLL 334
           +V   ++  + +G +P    ++++     + GD +  R + +EMK  G+ P+ V YN+++
Sbjct: 245 DVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMI 304

Query: 335 EAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWP 394
           +  GK G+       F+EM +    PD  T  ALI  + K       LE +  M+ N   
Sbjct: 305 DGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLK 364

Query: 395 MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIE 454
            + + Y+TL++     G++++A + + DM+      P+ Y+YT++++     GN+ +A  
Sbjct: 365 PNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLV-PNEYTYTSLIDANCKIGNLSDAFR 423

Query: 455 LFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           L  EM ++GV  NV+  T LI  L  A R+ +   +FG     GV P+
Sbjct: 424 LGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPN 471



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/341 (24%), Positives = 160/341 (46%), Gaps = 5/341 (1%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           Q++  F+  ++   L P E  + ++   + + G       +L NEM+   +E + +TY+ 
Sbjct: 384 QQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAF-RLGNEMLQVGVEWNVVTYTA 442

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           +I          EA E F +M   G++P+  +Y+A++  + K+  ++  L L       G
Sbjct: 443 LIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRG 502

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
            KPD + +             +  + V+ EMK  G++ N ++Y TL++A  K+G P    
Sbjct: 503 IKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGL 562

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN-KWPMDFILYNTLLN- 405
            L DEM E  +     T   LI    K +    A++ + R+  +     +  ++  +++ 
Sbjct: 563 HLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDG 622

Query: 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
           +C D   VE A  LFE M +     PD  +YT++++     GNV  A+ L ++M+E+G+ 
Sbjct: 623 LCKD-NQVEAATTLFEQM-VQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMK 680

Query: 466 INVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLC 506
           ++++  T L+  L    ++          I  G+ PD+ LC
Sbjct: 681 LDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLC 721



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/272 (23%), Positives = 117/272 (43%), Gaps = 12/272 (4%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN  +      +      +L NE+    I+ D + Y T I         + A      M 
Sbjct: 475 YNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMK 534

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL------GKMFG 303
           + G+  + + Y+ ++D Y KSG   E L L +       +   + F VL       K+  
Sbjct: 535 ECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVS 594

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
           ++ DY       +     G+Q N  ++  +++ + K  +   A +LF++MV+ GL PD  
Sbjct: 595 KAVDYFN-----RISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRT 649

Query: 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
             T+L+    K     +AL L ++M E    +D + Y +L+   +    +++A    E+M
Sbjct: 650 AYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEM 709

Query: 424 KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIEL 455
            + +   PD     ++L  +   G +D A+EL
Sbjct: 710 -IGEGIHPDEVLCISVLKKHYELGCIDEAVEL 740


>gi|449487793|ref|XP_004157803.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Cucumis sativus]
          Length = 864

 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 137/572 (23%), Positives = 251/572 (43%), Gaps = 34/572 (5%)

Query: 107 LQRQKRSTYSYNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTRENALLILNSL-- 164
           L+R KR   S N    +  + A    D D   E  L    E+ H+  + + L+  N+L  
Sbjct: 206 LERMKRERVSPNILTYNTVINACARGDLD--WEGLLGLFAEMRHEGVQPD-LVTYNTLLS 262

Query: 165 -----KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIE 219
                    ++   F  +    + P  T +  +     + G+  + +  L  EM S    
Sbjct: 263 ACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGK-LEKVAMLLKEMESEGYL 321

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
            D  +Y+ +I    +     EA++ F++M   G +P+  TYS +L++Y K G+ ++V  L
Sbjct: 322 PDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRYDDVREL 381

Query: 280 YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
           + +   S  +PD   +++L ++FGE G +  +  +  ++    + PN+  Y  L+ A GK
Sbjct: 382 FLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVDENIDPNMETYEGLVFACGK 441

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
            G    A+ +   M   G+ P  K  + LI+ YG+A    +AL  +  M E         
Sbjct: 442 GGLHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQAALYDEALVAFNTMNEVGSKSTIDT 501

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNY-SYTAMLNIYGSGGNVDNAIELFEE 458
           YN+L++  A  GL +E E +   M+  +Y    N  S++ ++  Y   G  + AI+ F E
Sbjct: 502 YNSLIHTFARGGLYKEFEAILSRMR--EYGISRNAKSFSGIIEGYRQSGQYEEAIKAFVE 559

Query: 459 MSELGVAIN------VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSV 512
           M ++   ++      V+G  C       A  +D+    F      G+ P   LC C++  
Sbjct: 560 MEKMRCELDEQTLEGVLGVYCF------AGLVDESKEQFIEIKASGILP-SVLCYCMMLA 612

Query: 513 VSLC-----ETSEDVGKVI-TCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEV 566
           V        + SE + ++I T +   +  +   +    D+ + ++ ++  F  +  +   
Sbjct: 613 VYAKNGRWDDASELLDEMIKTRVSSIHQVIGQMIKGDYDDDSNWQMVEYVFDKLNAEGCG 672

Query: 567 DARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQ 626
              R F N L++         RA  +L   T  GL+P L  ++   WS+DV  +  G A 
Sbjct: 673 FGMR-FYNTLLEALWWLGQKGRAARVLTEATKRGLFPELFRQSKLVWSVDVHRMWEGGAY 731

Query: 627 TALEEWMWTLAKIVLREEVLPQLFLAETGTGT 658
           TA+  W+  + ++++  E LPQL     G G+
Sbjct: 732 TAVSLWVNKMNEMLMDGEDLPQLAAVVVGRGS 763



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 100/382 (26%), Positives = 171/382 (44%), Gaps = 41/382 (10%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           WQ+S   F +++ Q                         I    NE +          Y+
Sbjct: 128 WQRSLRLFKYMQRQ-------------------------IWCKPNEHI----------YT 152

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
            II+   R  L ++  E F+ M   G++    +Y+A+++ Y ++G+ E  L L ER    
Sbjct: 153 IIISLLGREGLLEKCSEIFDEMASQGVIRSVFSYTALINAYGRNGQYETSLELLERMKRE 212

Query: 287 GWKPDPIAF-SVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGL 345
              P+ + + +V+        D++G+  +  EM+  GVQP+LV YNTLL A    G    
Sbjct: 213 RVSPNILTYNTVINACARGDLDWEGLLGLFAEMRHEGVQPDLVTYNTLLSACAARGLGDE 272

Query: 346 ARSLFDEMVESGLTPDEKTLTALIKIYGK-ARWAKDALELWERMRENKWPMDFILYNTLL 404
           A  +F  M+E G+ P+  T + +++ +GK  +  K A+ L E   E   P D   YN L+
Sbjct: 273 AEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKVAMLLKEMESEGYLP-DISSYNVLI 331

Query: 405 NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
              A +G ++EA  +F+ M+ +  C P+  +Y+ +LN+YG  G  D+  ELF +M E   
Sbjct: 332 EAHAKLGSIKEAMDVFKQMQAAG-CVPNASTYSILLNLYGKHGRYDDVRELFLQMKESSA 390

Query: 465 AINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGK 524
             +      LI+  G+     ++V +F   +D  + P+      L+         ED  K
Sbjct: 391 EPDATTYNILIRVFGEGGYFKEVVTLFHDLVDENIDPNMETYEGLVFACGKGGLHEDAKK 450

Query: 525 VITCLQQAN--PKLVAFLNLIE 544
           ++  +      P   A+  LIE
Sbjct: 451 ILFHMNGKGIVPSSKAYSGLIE 472



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 80/350 (22%), Positives = 145/350 (41%), Gaps = 43/350 (12%)

Query: 295 FSVLGKMFGESGDYD-GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
           FS++ K F   GD+   +R      + +  +PN  +Y  ++  +G+ G       +FDEM
Sbjct: 115 FSLVFKEFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKCSEIFDEM 174

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCA--DI- 410
              G+     + TALI  YG+    + +LEL ERM+  +   + + YNT++N CA  D+ 
Sbjct: 175 ASQGVIRSVFSYTALINAYGRNGQYETSLELLERMKRERVSPNILTYNTVINACARGDLD 234

Query: 411 ---------------------------------GLVEEAERLFEDMKLSDYCKPDNYSYT 437
                                            GL +EAE +F+ M +     P+  +Y+
Sbjct: 235 WEGLLGLFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTM-IEGGIVPEITTYS 293

Query: 438 AMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDR 497
            ++  +G  G ++    L +EM   G   ++     LI+   K   I + + VF      
Sbjct: 294 YIVETFGKLGKLEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAA 353

Query: 498 GVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ--ANPKLVAFLNLIEDNSTG--FENI 553
           G  P+      LL++       +DV ++   +++  A P    +  LI     G  F+ +
Sbjct: 354 GCVPNASTYSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEV 413

Query: 554 KEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYP 603
              F +++ D  +D        L+  C    L+E A ++L+     G+ P
Sbjct: 414 VTLFHDLV-DENIDPNMETYEGLVFACGKGGLHEDAKKILFHMNGKGIVP 462


>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
 gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
          Length = 688

 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/302 (26%), Positives = 152/302 (50%), Gaps = 1/302 (0%)

Query: 201 RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTY 260
           +Q+  +  L N+M    +     + + +I C  R N  D A+  + +M+K G+ PD +T+
Sbjct: 107 KQYSTVVYLCNQMDLFGVTHTVYSLNILINCLCRLNHVDFAVSVWGKMFKLGIQPDVITF 166

Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
           + +++     GK++  + LY   V SG +PD I+++ L      SG+ +   +V ++M+ 
Sbjct: 167 TTLINGVCNEGKIKVAVELYNEMVRSGHEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQ 226

Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380
            G +PN+V YNT+++++ K      A     EMV  G+ PD  T  +++          +
Sbjct: 227 NGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNE 286

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
           A  L++RM +N    D + YN +++      LV +A     +M +     PD  +YT +L
Sbjct: 287 ATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEM-VDQGIPPDVVTYTTIL 345

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
           +     G ++ AI LF++M + G   +V+    +I  L K R ++D +      +DRG+ 
Sbjct: 346 HGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIP 405

Query: 501 PD 502
           P+
Sbjct: 406 PN 407



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 151/321 (47%), Gaps = 1/321 (0%)

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           P + + Y   +  L +  Q     +L  +M     + D + Y+TII    +  L ++A+E
Sbjct: 335 PPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAME 394

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
           +   M   G+ P+ VTYS IL  +   G+++E   L++  V     P+ + FS+L     
Sbjct: 395 FLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSILVDGLC 454

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
           + G     R+V + M   GV+PN+  YN L+       K   AR +F+ MV  G  PD  
Sbjct: 455 QEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVFEIMVGKGCAPDLH 514

Query: 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
           +   LI  Y  +R    A  L  +M   K   + + YNT++     +G + +A+ LF+ M
Sbjct: 515 SYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQELFKKM 574

Query: 424 KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483
             S    P   +Y+ +LN     G++D A++LF+ M E  +  +++  T LI+ +    +
Sbjct: 575 -CSSGMLPTLMTYSILLNGLCKHGHLDEALKLFKSMKEKKLEPDIILYTILIEGMFIGGK 633

Query: 484 IDDLVRVFGVSIDRGVKPDDR 504
           ++    +F      G++P  R
Sbjct: 634 LEVAKGLFSKLSADGIQPPGR 654



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 158/323 (48%), Gaps = 13/323 (4%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + I YN  +  L       +   +  +M  N  + + +TY+TII    +  L ++A+++ 
Sbjct: 197 DVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFL 256

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL------G 299
             M   G+ PD +TY++I+      G++ E   L++R   +G KPD + ++++       
Sbjct: 257 SEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKD 316

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
           ++  ++ D+      L EM   G+ P++V Y T+L  +   G+   A  LF +M + G  
Sbjct: 317 RLVNDAADF------LSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCK 370

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
           PD      +I    K R   DA+E    M +   P + + Y+T+L+   ++G ++EA +L
Sbjct: 371 PDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQL 430

Query: 420 FEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479
           F++M +     P+  +++ +++     G V  A  +FE M+E GV  N+     L+    
Sbjct: 431 FKEM-VGRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYC 489

Query: 480 KARRIDDLVRVFGVSIDRGVKPD 502
              ++++  +VF + + +G  PD
Sbjct: 490 LRCKMNEARKVFEIMVGKGCAPD 512



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 106/416 (25%), Positives = 180/416 (43%), Gaps = 10/416 (2%)

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           P + I YN  +  L    Q     +L   M  N  + D +TY+ II    +  L ++A +
Sbjct: 265 PPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAAD 324

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
           +   M   G+ PD VTY+ IL      G++ E + L+++    G KPD +A++ +     
Sbjct: 325 FLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLC 384

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
           +    +     L EM   G+ PN V Y+T+L      G+   A  LF EMV   + P+  
Sbjct: 385 KDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVMPNTL 444

Query: 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
           T + L+    +     +A  ++E M E     +   YN L+N       + EA ++FE M
Sbjct: 445 TFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVFEIM 504

Query: 424 KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483
            +   C PD +SY  ++N Y +   +D A  L  +MS   +  N +    +++ L    R
Sbjct: 505 -VGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVGR 563

Query: 484 IDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETS--EDVGKVITCLQQAN--PKLVAF 539
           + D   +F      G+ P       LL+   LC+    ++  K+   +++    P ++ +
Sbjct: 564 LLDAQELFKKMCSSGMLPTLMTYSILLN--GLCKHGHLDEALKLFKSMKEKKLEPDIILY 621

Query: 540 LNLIEDNSTG--FENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELL 593
             LIE    G   E  K  F  +  D      R + N +I       L++ A+EL 
Sbjct: 622 TILIEGMFIGGKLEVAKGLFSKLSADGIQPPGRTY-NVMIKGLLKEGLSDEAYELF 676



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/230 (23%), Positives = 101/230 (43%), Gaps = 1/230 (0%)

Query: 273 VEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNT 332
           V++ L+ + R      +P  + F        +   Y  + Y+  +M   GV   +   N 
Sbjct: 74  VDDALASFYRMARMNPRPSIVEFGKFLGSIAKMKQYSTVVYLCNQMDLFGVTHTVYSLNI 133

Query: 333 LLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENK 392
           L+  + +      A S++ +M + G+ PD  T T LI         K A+EL+  M  + 
Sbjct: 134 LINCLCRLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMVRSG 193

Query: 393 WPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNA 452
              D I YNTL+N   + G    A  +F+ M+  + CKP+  +Y  +++       V++A
Sbjct: 194 HEPDVISYNTLINGLCNSGNTNMAVHVFKKME-QNGCKPNVVTYNTIIDSLCKDRLVNDA 252

Query: 453 IELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           ++   EM   G+  + +    ++  L    ++++  R+F      G KPD
Sbjct: 253 MDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPD 302



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 86/182 (47%), Gaps = 3/182 (1%)

Query: 213 MVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK 272
           MV      D  +Y+ +I         D+A     +M    L P+ VTY+ I+      G+
Sbjct: 504 MVGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVGR 563

Query: 273 VEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNT 332
           + +   L+++  +SG  P  + +S+L     + G  D    + + MK   ++P++++Y  
Sbjct: 564 LLDAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEALKLFKSMKEKKLEPDIILYTI 623

Query: 333 LLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL---WERMR 389
           L+E M   GK  +A+ LF ++   G+ P  +T   +IK   K   + +A EL   W+ M+
Sbjct: 624 LIEGMFIGGKLEVAKGLFSKLSADGIQPPGRTYNVMIKGLLKEGLSDEAYELFRKWKMMK 683

Query: 390 EN 391
            N
Sbjct: 684 HN 685


>gi|302773712|ref|XP_002970273.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
 gi|300161789|gb|EFJ28403.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
          Length = 831

 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/327 (29%), Positives = 161/327 (49%), Gaps = 5/327 (1%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIEL-DNITYSTIITCAKRCNLFDEAIEWFERM 248
           YN  + SL   ++      + + MVS    + D ++YS +I    + +    A + +++M
Sbjct: 449 YNSLLNSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQM 508

Query: 249 YKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY 308
                +P+  TY+A L+   + G++ +   +YE  VA+G  PD I +S L   F  +  +
Sbjct: 509 IDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKH 568

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
           D    + + M S G +PN V YN LL  + K  KP  A  LF +MVE G  PD  T T L
Sbjct: 569 DQAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTL 628

Query: 369 IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428
           +  +      + A+E+++ M       D + YN LL      G   EA++LF+ M +S  
Sbjct: 629 LYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVM-VSRQ 687

Query: 429 CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE-LGVAINVMGCTCLIQCLGKARRIDDL 487
           CKPD  S+  M++       +D+A+E+FE M +  G + +++    LI  L   +R+ + 
Sbjct: 688 CKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEA 747

Query: 488 VRVFGVSIDR-GVKPDDRLCGCLLSVV 513
           ++VF   IDR  + PD      LL  +
Sbjct: 748 MKVFK-EIDRLKLSPDPHAFNVLLEAI 773



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 84/262 (32%), Positives = 128/262 (48%), Gaps = 10/262 (3%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN  +  L    +    + +  EMV+     D ITYST+I         D+A E FE M 
Sbjct: 520 YNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELFETMI 579

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
             G  P+ VTY+ +L    K  K +E   L+ + V  G  PD + ++ L   F   G  +
Sbjct: 580 SRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTLLYGFCNVGKIE 639

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               V  EM S G  P++V YN LL+   +AGKPG A+ LF  MV     PD  +   +I
Sbjct: 640 QAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQCKPDTVSHNIMI 699

Query: 370 KIYGKARWAKDALELWERMRENK-WPMDFILYNTLL-NMCADIGLVEEAERLFED---MK 424
               KA+   DA+E++ERM ++     D + YN+L+  +C +  L  EA ++F++   +K
Sbjct: 700 DGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRL-SEAMKVFKEIDRLK 758

Query: 425 LSDYCKPDNYSYTAMLNIYGSG 446
           LS    PD +++  +L     G
Sbjct: 759 LS----PDPHAFNVLLEAIKCG 776



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 93/373 (24%), Positives = 178/373 (47%), Gaps = 8/373 (2%)

Query: 177 IKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCN 236
           I  +N+ P     ++V  +  + GR    +  L   M+      D  T+S +I    + +
Sbjct: 365 IAGRNIQPSSGTCHSVIQELCKAGRVDSAL-SLLETMIKRGYCPDMATHSMLINELCKAD 423

Query: 237 LFDEAIEWFERMYK--TGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS-GWKPDPI 293
              EA E+ + M +  +       +Y+++L+   K+ KV +  +++   V+   + PD +
Sbjct: 424 KIQEAQEFLQGMDRKISSRSSSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSFVPDVV 483

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
           ++S+L   F +  +      + ++M  L   PN+  YN  L  + + G+   A+ +++EM
Sbjct: 484 SYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEM 543

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
           V +G +PD  T + LI  +  AR    A EL+E M       + + YN LL+        
Sbjct: 544 VAAGCSPDVITYSTLIHGFSLARKHDQAHELFETMISRGCRPNAVTYNCLLHGLCKESKP 603

Query: 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTC 473
           +EA  LF  M +   C PD  +YT +L  + + G ++ A+E+F+EM   G   +V+   C
Sbjct: 604 DEAHELFRKM-VERGCDPDRVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNC 662

Query: 474 LIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ-- 531
           L++   +A +  +  ++F V + R  KPD      ++  +S  +  +D  +V   ++Q  
Sbjct: 663 LLKGFFRAGKPGEAKQLFQVMVSRQCKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDH 722

Query: 532 -ANPKLVAFLNLI 543
             +P LV + +LI
Sbjct: 723 GCSPDLVTYNSLI 735



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 146/352 (41%), Gaps = 43/352 (12%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMP-DEVTYSAILDV 266
           +L   MV +  + D   YS ++    +    DEA + F  M      P + V ++A L  
Sbjct: 255 KLFRAMVKSGCKPDATIYSYMVLAHCKLENLDEAFKLFLEMAVESKAPLNNVAWTAFLSG 314

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
             KSGK+E+          S     P+ + +L ++  ESG  D       E+    +QP+
Sbjct: 315 LCKSGKIEQAFEACRTMQESLSSSQPV-YDMLIRLLIESGRIDKAEEACLEIAGRNIQPS 373

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
               +++++ + KAG+   A SL + M++ G  PD  T + LI    KA   ++A E  +
Sbjct: 374 SGTCHSVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQ 433

Query: 387 RM--------------------------------------RENKWPMDFILYNTLLNMCA 408
            M                                       E  +  D + Y+ L++   
Sbjct: 434 GMDRKISSRSSSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSILIDGFC 493

Query: 409 DIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINV 468
            I  +  AE+L++ M +   C P+  +Y A LN     G + +A  ++EEM   G + +V
Sbjct: 494 KIDELGRAEKLYKQM-IDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDV 552

Query: 469 MGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSE 520
           +  + LI     AR+ D    +F   I RG +P+     CLL    LC+ S+
Sbjct: 553 ITYSTLIHGFSLARKHDQAHELFETMISRGCRPNAVTYNCLLH--GLCKESK 602



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 77/353 (21%), Positives = 145/353 (41%), Gaps = 45/353 (12%)

Query: 154 RENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEM 213
           RE    ++  L+   ++  FF W++++N F  +   YN  +  L   R  +   Q+  +M
Sbjct: 97  RETVGAVIKHLRDGGEALTFFRWLQARN-FKHDVFTYNCLLDKLIRHRDLKQAGQVFEKM 155

Query: 214 VSNEIELDNITYSTII--TCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG 271
           V+  +  +  TY+ ++  +C +R +  DEA+ +F  M   G  P    Y  + +    +G
Sbjct: 156 VAQGVVPNGFTYAVLVQSSCYERNS--DEAVRFFGEMVDKGFKPSSTLYQKVTECLKATG 213

Query: 272 KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYN 331
           K  E   ++ R +                           R  ++ M    +  N V+ +
Sbjct: 214 KEGEFSRVFGRDLEK-------------------------RVAVEMMLKKALLVNFVIQD 248

Query: 332 TLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMR-E 390
             +E          A  LF  MV+SG  PD    + ++  + K     +A +L+  M  E
Sbjct: 249 KAIE----------ASKLFRAMVKSGCKPDATIYSYMVLAHCKLENLDEAFKLFLEMAVE 298

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK-LSDYCKPDNYSYTAMLNIYGSGGNV 449
           +K P++ + +   L+     G +E+A   FE  + + +        Y  ++ +    G +
Sbjct: 299 SKAPLNNVAWTAFLSGLCKSGKIEQA---FEACRTMQESLSSSQPVYDMLIRLLIESGRI 355

Query: 450 DNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           D A E   E++   +  +   C  +IQ L KA R+D  + +    I RG  PD
Sbjct: 356 DKAEEACLEIAGRNIQPSSGTCHSVIQELCKAGRVDSALSLLETMIKRGYCPD 408


>gi|15218241|ref|NP_172439.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097039|sp|O04491.1|PPR26_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g09680
 gi|2160161|gb|AAB60724.1| F21M12.7 gene product [Arabidopsis thaliana]
 gi|332190358|gb|AEE28479.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 607

 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 87/322 (27%), Positives = 160/322 (49%), Gaps = 3/322 (0%)

Query: 183 FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
           FP+    +N+ M            +++ +E+    ++   ++++T+I    +    DE  
Sbjct: 236 FPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGF 295

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
               +M K+   PD  TYSA+++   K  K++    L++     G  P+ + F+ L    
Sbjct: 296 RLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGH 355

Query: 303 GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
             +G+ D ++   Q+M S G+QP++V+YNTL+    K G    AR++ D M+  GL PD+
Sbjct: 356 SRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDK 415

Query: 363 KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL-NMCADIGLVEEAERLFE 421
            T T LI  + +    + ALE+ + M +N   +D + ++ L+  MC + G V +AER   
Sbjct: 416 ITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKE-GRVIDAERALR 474

Query: 422 DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
           +M L    KPD+ +YT M++ +   G+     +L +EM   G   +V+    L+  L K 
Sbjct: 475 EM-LRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKL 533

Query: 482 RRIDDLVRVFGVSIDRGVKPDD 503
            ++ +   +    ++ GV PDD
Sbjct: 534 GQMKNADMLLDAMLNIGVVPDD 555



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 99/402 (24%), Positives = 165/402 (41%), Gaps = 68/402 (16%)

Query: 162 NSLKFWQKSYF-FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIEL 220
           N L   Q+S F FF +I SQ  F      Y V  + L     F   + L   +VS + + 
Sbjct: 92  NPLSLPQRSIFAFFKFISSQPGFRFTVETYFVLARFLAVHEMFTEAQSLIELVVSRKGK- 150

Query: 221 DNITYSTIITCAKR-----CNLFDEAIEWFERMYKTGLMPDEVTY--------------- 260
            N   S  I+  +      C    +A+         G +PD +                 
Sbjct: 151 -NSASSVFISLVEMRVTPMCGFLVDALMI--TYTDLGFIPDAIQCFRLSRKHRFDVPIRG 207

Query: 261 -SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMK 319
              +LD   K      +   Y   + +G+  +   F++L   F + G+    + V  E+ 
Sbjct: 208 CGNLLDRMMKLNPTGTIWGFYMEILDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEIT 267

Query: 320 SLGVQPNLVVYNTLLEAMGKAG-----------------KPGL----------------- 345
              +QP +V +NTL+    K G                 +P +                 
Sbjct: 268 KRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMD 327

Query: 346 -ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL--ELWERMRENKWPMDFILYNT 402
            A  LFDEM + GL P++   T L  I+G +R  +  L  E +++M       D +LYNT
Sbjct: 328 GAHGLFDEMCKRGLIPNDVIFTTL--IHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNT 385

Query: 403 LLN-MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461
           L+N  C +  LV  A R   D  +    +PD  +YT +++ +  GG+V+ A+E+ +EM +
Sbjct: 386 LVNGFCKNGDLV--AARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQ 443

Query: 462 LGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
            G+ ++ +G + L+  + K  R+ D  R     +  G+KPDD
Sbjct: 444 NGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDD 485



 Score = 82.8 bits (203), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 97/203 (47%), Gaps = 3/203 (1%)

Query: 179 SQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLF 238
           S+ L P + + YN  +              + + M+   +  D ITY+T+I    R    
Sbjct: 373 SKGLQP-DIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDV 431

Query: 239 DEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
           + A+E  + M + G+  D V +SA++    K G+V +        + +G KPD + ++++
Sbjct: 432 ETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMM 491

Query: 299 GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
              F + GD      +L+EM+S G  P++V YN LL  + K G+   A  L D M+  G+
Sbjct: 492 MDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAMLNIGV 551

Query: 359 TPDEKTLTALIKIYGKARWAKDA 381
            PD+ T   L++  G  R A  +
Sbjct: 552 VPDDITYNTLLE--GHHRHANSS 572


>gi|38567720|emb|CAE76009.1| B1358B12.18 [Oryza sativa Japonica Group]
 gi|90265197|emb|CAH67636.1| B0812A04.6 [Oryza sativa Indica Group]
          Length = 609

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 161/333 (48%), Gaps = 5/333 (1%)

Query: 172 FFFNWIKSQNLFPMETIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIIT 230
           F+   + +    P E   +NV M+ L R G +    + + +EM S  +    ++++T+I+
Sbjct: 227 FYLQLLDAG--LPPEAKLFNVLMRDLVRLG-ELASAQNVFDEMQSRGVRRTVVSFNTMIS 283

Query: 231 CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
              R    D A     RM + G+ PD  TY A++    + G++E+   ++E+    G KP
Sbjct: 284 GMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKP 343

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
           + + F++L     + GD + +  + +EM+  GV+P+ V YN ++  + +A     A  + 
Sbjct: 344 NAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIV 403

Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
            EM  +GL PD  T T LI  Y K      A+E+ + M      +D + Y  L++  +  
Sbjct: 404 VEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKA 463

Query: 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG 470
           G   +AER+  +M +    +PDN +YT +++ +   G+V   + L +EM   G    V+ 
Sbjct: 464 GRSADAERVLGEM-MEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVT 522

Query: 471 CTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
              ++    K  ++ +   +    I+ GV PDD
Sbjct: 523 YNVIMNGFCKLGQMKNADMLLNAMINIGVSPDD 555



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/264 (25%), Positives = 132/264 (50%), Gaps = 1/264 (0%)

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           EA  ++ ++   GL P+   ++ ++    + G++    ++++   + G +   ++F+ + 
Sbjct: 223 EACAFYLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMI 282

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
                +GD DG   + + M   GV P++  Y  L++ + + G+   AR +F++M   G+ 
Sbjct: 283 SGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMK 342

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
           P+    T LI  + K   A+  LEL   MRE     D + YN ++N       ++ A  +
Sbjct: 343 PNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGI 402

Query: 420 FEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479
             +M+ S   +PD  +YT +++ Y     +D A+E+ + M   GV ++ +  T LI  L 
Sbjct: 403 VVEMR-SAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLS 461

Query: 480 KARRIDDLVRVFGVSIDRGVKPDD 503
           KA R  D  RV G  ++ G++PD+
Sbjct: 462 KAGRSADAERVLGEMMEAGLEPDN 485



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 97/199 (48%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + YN  +  L   R  +    +  EM S  +  D +TY+T+I    +    D A+E  
Sbjct: 379 DAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIK 438

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           + M   G+  DEVTY+A++   +K+G+  +   +    + +G +PD   ++++   F   
Sbjct: 439 QNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRK 498

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           GD      +L+EM++ G +P +V YN ++    K G+   A  L + M+  G++PD+ T 
Sbjct: 499 GDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDDITY 558

Query: 366 TALIKIYGKARWAKDALEL 384
             L+  + K     D  EL
Sbjct: 559 NILLDGHCKHGKVTDIEEL 577



 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 110/268 (41%), Gaps = 5/268 (1%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           F  +  + + P   +F  +     + G    ++E L  EM    +  D +TY+ I+    
Sbjct: 333 FEKMCGRGMKPNAVVFTILIDAHCKKGDAETMLE-LHREMRERGVRPDAVTYNAIVNGLC 391

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
           R      A      M   GL PD VTY+ ++D Y K  +++  + + +  VA G   D +
Sbjct: 392 RARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEV 451

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
            ++ L     ++G       VL EM   G++P+   Y  +++A  + G       L  EM
Sbjct: 452 TYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEM 511

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
              G  P   T   ++  + K    K+A  L   M       D I YN LL+     G V
Sbjct: 512 QNKGRKPGVVTYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDDITYNILLDGHCKHGKV 571

Query: 414 EEAERLFEDMKLSDYCKPDNYSYTAMLN 441
            +     E++K +    PD   YT+++ 
Sbjct: 572 TD----IEELKSAKGTVPDLGVYTSIVG 595


>gi|356513567|ref|XP_003525484.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Glycine max]
          Length = 857

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 111/459 (24%), Positives = 210/459 (45%), Gaps = 11/459 (2%)

Query: 199 FGR--QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPD 256
           FG+  + + + +L  EM       D  +Y+ ++          EA+  F +M   G + +
Sbjct: 285 FGKLNRLEKVSELLREMECGGNLPDITSYNVLLEAYAELGSIKEAMGVFRQMQAAGCVAN 344

Query: 257 EVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQ 316
             TYS +L++Y K G+ ++V  L+     S   PD   +++L ++FGE G +  +  +  
Sbjct: 345 AATYSVLLNLYGKHGRYDDVRDLFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFH 404

Query: 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
           +M    V+PN+  Y  L+ A GK G    A+ +   M E G+ P  K  T +I+ +G+A 
Sbjct: 405 DMAEENVEPNMQTYEGLIFACGKGGLYEDAKKILLHMNEKGVVPSSKAYTGVIEAFGQAA 464

Query: 377 WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY 436
             ++AL ++  M E         YN+L++  A  GL +EAE +   M  S   K D +S+
Sbjct: 465 LYEEALVMFNTMNEVGSNPTVETYNSLIHAFARGGLYKEAEAILSRMNESG-LKRDVHSF 523

Query: 437 TAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496
             ++  +  GG  + A++ + EM +     N +    ++     A  +D+    F     
Sbjct: 524 NGVIEAFRQGGQYEEAVKSYVEMEKANCEPNELTLEAVLSIYCSAGLVDEGEEQFQEIKA 583

Query: 497 RGVKPDDRLCGCL-LSVVSLCETSEDVGKVITCL-----QQANPKLVAFLNLIEDNSTGF 550
            G+ P   +C C+ L++ +  +   D   +I  +        +  +   +    D+ + +
Sbjct: 584 SGILPS-VMCYCMMLALYAKNDRLNDAYNLIDAMITMRVSDIHQVIGQMIKGDFDDESNW 642

Query: 551 ENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTL 610
           + ++  F  +  +      R F N L++        ERA  +L   +  GL+P L  K+ 
Sbjct: 643 QIVEYVFDKLNSEGCGLGMR-FYNALLEALWCMFQRERAARVLNEASKRGLFPELFRKSK 701

Query: 611 DEWSLDVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQL 649
             WS+DV  +S G A TAL  W+  + ++ +  + LP++
Sbjct: 702 LVWSVDVHRMSEGGALTALSVWLNNVHEMSMTGDDLPEV 740



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 153/337 (45%), Gaps = 3/337 (0%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           +  S    N +K + + P    +  V     R G  ++ +  L  EM    I+ D ITY+
Sbjct: 185 FHASLELLNGMKQERVSPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDVITYN 244

Query: 227 TII-TCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVA 285
           T++  CA R  L DEA   F  M ++G++PD  TYS ++  + K  ++E+V  L      
Sbjct: 245 TLLGACAHR-GLGDEAEMVFRTMNESGIVPDINTYSYLVQTFGKLNRLEKVSELLREMEC 303

Query: 286 SGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGL 345
            G  PD  +++VL + + E G       V ++M++ G   N   Y+ LL   GK G+   
Sbjct: 304 GGNLPDITSYNVLLEAYAELGSIKEAMGVFRQMQAAGCVANAATYSVLLNLYGKHGRYDD 363

Query: 346 ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405
            R LF EM  S   PD  T   LI+++G+  + K+ + L+  M E     +   Y  L+ 
Sbjct: 364 VRDLFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMAEENVEPNMQTYEGLIF 423

Query: 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
            C   GL E+A+++   M       P + +YT ++  +G     + A+ +F  M+E+G  
Sbjct: 424 ACGKGGLYEDAKKILLHMNEKGVV-PSSKAYTGVIEAFGQAALYEEALVMFNTMNEVGSN 482

Query: 466 INVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
             V     LI    +     +   +     + G+K D
Sbjct: 483 PTVETYNSLIHAFARGGLYKEAEAILSRMNESGLKRD 519



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 108/456 (23%), Positives = 197/456 (43%), Gaps = 12/456 (2%)

Query: 54  SPNPETKTLSLSEQLKPLSSTTLSPTKNDRTPLLSKPKSTWVN---PTKPRRSVLSLQRQ 110
           +P+P+ + L  +   KP     ++P+        S    T +N      PR S+      
Sbjct: 32  TPSPKRRLLLQARAAKPNVLIPINPSVTVEKGKYSYDVETLINRLTALPPRGSIARCLDP 91

Query: 111 KRSTYSYNPRVRDLKLFARKLNDCDNTEEAFLRAITEI---PHQPTRENALLILNSLKFW 167
            ++  S N      K FA++  D   +   F     +I   P++      + +L      
Sbjct: 92  FKNKLSLNDFALVFKEFAQR-GDWQRSLRLFKYMQRQIWCKPNEHIHTIMITLLGREGLL 150

Query: 168 QKSYFFFNWIKSQNLFPMETIF-YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
            K    F+ + S  +  + T++ Y   + +     QF    +L N M    +    +TY+
Sbjct: 151 DKCREVFDEMPSNGV--VRTVYSYTAIINAYGRNGQFHASLELLNGMKQERVSPSILTYN 208

Query: 227 TIITCAKRCNL-FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVA 285
           T+I    R  L ++  +  F  M   G+ PD +TY+ +L   A  G  +E   ++     
Sbjct: 209 TVINACARGGLDWEGLLGLFAEMRHEGIQPDVITYNTLLGACAHRGLGDEAEMVFRTMNE 268

Query: 286 SGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGL 345
           SG  PD   +S L + FG+    + +  +L+EM+  G  P++  YN LLEA  + G    
Sbjct: 269 SGIVPDINTYSYLVQTFGKLNRLEKVSELLREMECGGNLPDITSYNVLLEAYAELGSIKE 328

Query: 346 ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405
           A  +F +M  +G   +  T + L+ +YGK     D  +L+  M+ +    D   YN L+ 
Sbjct: 329 AMGVFRQMQAAGCVANAATYSVLLNLYGKHGRYDDVRDLFLEMKVSNTDPDAGTYNILIQ 388

Query: 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
           +  + G  +E   LF DM   +  +P+  +Y  ++   G GG  ++A ++   M+E GV 
Sbjct: 389 VFGEGGYFKEVVTLFHDMA-EENVEPNMQTYEGLIFACGKGGLYEDAKKILLHMNEKGVV 447

Query: 466 INVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
            +    T +I+  G+A   ++ + +F    + G  P
Sbjct: 448 PSSKAYTGVIEAFGQAALYEEALVMFNTMNEVGSNP 483



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 64/272 (23%), Positives = 123/272 (45%), Gaps = 10/272 (3%)

Query: 198 RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDE 257
           + GR +  +  L  EM  +  + D  TY+ +I        F E +  F  M +  + P+ 
Sbjct: 357 KHGR-YDDVRDLFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMAEENVEPNM 415

Query: 258 VTYSAILDVYAKSGKVEE----VLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRY 313
            TY  ++    K G  E+    +L + E+GV     P   A++ + + FG++  Y+    
Sbjct: 416 QTYEGLIFACGKGGLYEDAKKILLHMNEKGVV----PSSKAYTGVIEAFGQAALYEEALV 471

Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYG 373
           +   M  +G  P +  YN+L+ A  + G    A ++   M ESGL  D  +   +I+ + 
Sbjct: 472 MFNTMNEVGSNPTVETYNSLIHAFARGGLYKEAEAILSRMNESGLKRDVHSFNGVIEAFR 531

Query: 374 KARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDN 433
           +    ++A++ +  M +     + +    +L++    GLV+E E  F+++K S    P  
Sbjct: 532 QGGQYEEAVKSYVEMEKANCEPNELTLEAVLSIYCSAGLVDEGEEQFQEIKASGIL-PSV 590

Query: 434 YSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
             Y  ML +Y     +++A  L + M  + V+
Sbjct: 591 MCYCMMLALYAKNDRLNDAYNLIDAMITMRVS 622


>gi|302781562|ref|XP_002972555.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
 gi|300160022|gb|EFJ26641.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
          Length = 564

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 150/306 (49%), Gaps = 6/306 (1%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
            I YN  +  L    + +    +   MV   +  D ITYS ++    + +  DEA+E   
Sbjct: 216 VITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLH 275

Query: 247 RMYKTG-----LMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKM 301
            M   G     L+PD+VT++ ++    K+G  E+  +L+E  VA   +PD + F  L   
Sbjct: 276 GMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDG 335

Query: 302 FGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD 361
             ++G  +  R +L  M +LGV PN+V YN L+  + K+G+   A    +EMV SG  PD
Sbjct: 336 LCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPD 395

Query: 362 EKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFE 421
             T  +L+    +A    DAL+L   ++   W  D + YN L++     G  E+A  + E
Sbjct: 396 SITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLE 455

Query: 422 DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
           +M    + +PD++++ A  +     GN+   +EL   +   G+  +   C+ ++  + ++
Sbjct: 456 EMVGKGH-QPDSFTFAACFSGLHRSGNLAGTMELLRVVLAKGMLPDATTCSSILDWVCRS 514

Query: 482 RRIDDL 487
            ++DD+
Sbjct: 515 GKLDDV 520



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 86/287 (29%), Positives = 143/287 (49%), Gaps = 6/287 (2%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D +T+ST+I    +C   DEA   F+ M   G +P+ +TY+A+++   K+ K+E   ++ 
Sbjct: 180 DTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMI 239

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVV-----YNTLLE 335
           E  V  G  PD I +SVL   F ++   D    +L  M S G  PN++V     +N L+ 
Sbjct: 240 ESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIA 299

Query: 336 AMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPM 395
              KAG    A +LF+EMV   L PD  T  ALI    KA   + A ++ + M     P 
Sbjct: 300 GACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPP 359

Query: 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIEL 455
           + + YN L++     G +EEA +  E+M +S  C PD+ +Y +++         D+A++L
Sbjct: 360 NVVTYNALVHGLCKSGRIEEACQFLEEM-VSSGCVPDSITYGSLVYALCRASRTDDALQL 418

Query: 456 FEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
             E+   G   + +    L+  L K+ + +  + V    + +G +PD
Sbjct: 419 VSELKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPD 465



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 97/344 (28%), Positives = 157/344 (45%), Gaps = 14/344 (4%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + YN  + SL      +   +L  +M S     + +TYS +I    +    DEA E  
Sbjct: 71  DVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGRIDEARELI 130

Query: 246 ERMYKTG--LMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG---WKPDPIAFSVLGK 300
           + M +    ++P+ +TY++ LD   K     E   L  R +  G     PD + FS L  
Sbjct: 131 QEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELM-RSLRDGSLRVSPDTVTFSTLID 189

Query: 301 MFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTP 360
              + G  D    V  +M + G  PN++ YN L+  + KA K   A ++ + MV+ G+TP
Sbjct: 190 GLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTP 249

Query: 361 DEKTLTALIKIYGKARWAKDALELWERMRE-----NKWPMDFILYNTLLNMCADIGLVEE 415
           D  T + L+  + KA    +ALEL   M       N    D + +N L+      G  E+
Sbjct: 250 DVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQ 309

Query: 416 AERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLI 475
           A  LFE+M   +  +PD  ++ A+++     G V+ A ++ + M  LGV  NV+    L+
Sbjct: 310 ASALFEEMVAKNL-QPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALV 368

Query: 476 QCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETS 519
             L K+ RI++  +     +  G  PD    G L  V +LC  S
Sbjct: 369 HGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSL--VYALCRAS 410



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 128/267 (47%), Gaps = 6/267 (2%)

Query: 241 AIEWFE-RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           A+E F   M + G+ P  VTY+ I++   KS  +   + L+E  V  G  PD + ++ L 
Sbjct: 20  ALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEELVERGHHPDVVTYNTLI 79

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG-- 357
               ++GD +  R +  +M S G  PN+V Y+ L+  + K G+   AR L  EM      
Sbjct: 80  DSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCD 139

Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPM--DFILYNTLLNMCADIGLVEE 415
           + P+  T  + +    K     +A EL   +R+    +  D + ++TL++     G ++E
Sbjct: 140 VLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDE 199

Query: 416 AERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLI 475
           A  +F+DM    Y  P+  +Y A++N       ++ A  + E M + GV  +V+  + L+
Sbjct: 200 ACSVFDDMIAGGY-VPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLV 258

Query: 476 QCLGKARRIDDLVRVFGVSIDRGVKPD 502
               KA R+D+ + +      RG  P+
Sbjct: 259 DAFCKASRVDEALELLHGMASRGCTPN 285



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 91/187 (48%)

Query: 181 NLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDE 240
           N+   + + +N+ +        F+    L  EMV+  ++ D +T+  +I    +    + 
Sbjct: 285 NVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEA 344

Query: 241 AIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGK 300
           A +  + M   G+ P+ VTY+A++    KSG++EE     E  V+SG  PD I +  L  
Sbjct: 345 ARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVY 404

Query: 301 MFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTP 360
               +   D    ++ E+KS G  P+ V YN L++ + K+GK   A ++ +EMV  G  P
Sbjct: 405 ALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQP 464

Query: 361 DEKTLTA 367
           D  T  A
Sbjct: 465 DSFTFAA 471


>gi|449455685|ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/333 (27%), Positives = 165/333 (49%), Gaps = 8/333 (2%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F  +K+    P + I+  +  K   FG      ++  ++M ++    D +T++ ++   
Sbjct: 319 LFVKMKANGHKPDQVIYITLLDKFNDFG-DLDTFKEFWSQMEADGYMPDVVTFTILVDVL 377

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +   FDEA   F+ M K G++P+  TY+ ++    ++G++E+ L L     + G +P  
Sbjct: 378 CKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLGTMESVGVQPTA 437

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
             +++    FG+SG+        ++MK+ G+ PN+V  N  L ++ + G+   A+++F+ 
Sbjct: 438 YTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNG 497

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           + E+GL PD  T   ++K Y K     +A+ L   M  N    D I+ N+L++     G 
Sbjct: 498 LRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGR 557

Query: 413 VEEAERLFE---DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVM 469
           V+EA ++F+   DMKLS    P   +Y  +L+  G  G V  AIELFE M E   + N +
Sbjct: 558 VDEAWQMFDRMKDMKLS----PTVVTYNTLLSGLGKEGRVQKAIELFESMIEKKCSPNTI 613

Query: 470 GCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
               L+ C  K   ++  +++F        KPD
Sbjct: 614 SFNTLLDCFCKNDEVELALKMFSKMTVMDCKPD 646



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 161/308 (52%), Gaps = 2/308 (0%)

Query: 161  LNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIEL 220
            L  + + +K++  F  +K+    P    F  +     + G+  +L E L  EM+S   + 
Sbjct: 798  LLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFE-LYKEMISRRCKP 856

Query: 221  DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
            D ITY+ +I+   + N  D+A+++F  +  +   P   TY  ++D  AK G++EE + L+
Sbjct: 857  DAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLF 916

Query: 281  ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
            E     G KP+   F++L   +G+ GD +    + + M + G++P+L  Y  L++ +  A
Sbjct: 917  EEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLA 976

Query: 341  GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
            G+   A   F+E+  +GL PD      +I   GK++  ++AL L+  MR      D   Y
Sbjct: 977  GRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTY 1036

Query: 401  NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
            N+L+      G+VE+A+R++E+++L+   +PD ++Y A++  Y    N ++A  +++ M 
Sbjct: 1037 NSLMLNLGLAGMVEQAKRMYEELQLAGL-EPDVFTYNALIRGYSLSENPEHAYTVYKNMM 1095

Query: 461  ELGVAINV 468
              G   N+
Sbjct: 1096 VDGCNPNI 1103



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/347 (26%), Positives = 150/347 (43%), Gaps = 36/347 (10%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           Y+  M +L   R  +++  L  EM    +  +  T++  I    R    DEA E F RM 
Sbjct: 230 YSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMD 289

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
             G  PD VTY+ ++D    +G++E    L+ +  A+G KPD + +  L   F + GD D
Sbjct: 290 DEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLD 349

Query: 310 GIRYVLQEMKS-----------------------------------LGVQPNLVVYNTLL 334
             +    +M++                                    G+ PNL  YNTL+
Sbjct: 350 TFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLI 409

Query: 335 EAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWP 394
             + +AG+   A  L   M   G+ P   T    I  +GK+     A+E +E+M+     
Sbjct: 410 CGLLRAGRIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIV 469

Query: 395 MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIE 454
            + +  N  L   A++G + EA+ +F  ++  +   PD+ +Y  M+  Y   G VD A+ 
Sbjct: 470 PNIVACNASLYSLAEMGRLREAKTMFNGLR-ENGLAPDSVTYNMMMKCYSKVGQVDEAVN 528

Query: 455 LFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
           L  EM   G   +V+    LI  L KA R+D+  ++F    D  + P
Sbjct: 529 LLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSP 575



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 84/311 (27%), Positives = 148/311 (47%), Gaps = 1/311 (0%)

Query: 191 NVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYK 250
           N  ++ LR   + + +  +   M    I  D  TY TI           +      +M K
Sbjct: 126 NFMLEFLRVHDKVEDMAAVFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRK 185

Query: 251 TGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDG 310
            G + +  +Y+ ++ +  +SG   E L +Y R V+ G KP    +S L    G+  D + 
Sbjct: 186 AGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEM 245

Query: 311 IRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK 370
           +  +L+EM+ LG++PN+  +   +  +G+AGK   A  +F  M + G  PD  T T LI 
Sbjct: 246 VMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLID 305

Query: 371 IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCK 430
               A   ++A EL+ +M+ N    D ++Y TLL+   D G ++  +  +  M+   Y  
Sbjct: 306 ALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGY-M 364

Query: 431 PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRV 490
           PD  ++T ++++     + D A   F+ M + G+  N+     LI  L +A RI+D +++
Sbjct: 365 PDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKL 424

Query: 491 FGVSIDRGVKP 501
            G     GV+P
Sbjct: 425 LGTMESVGVQP 435



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 80/334 (23%), Positives = 161/334 (48%), Gaps = 2/334 (0%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           ++Y  F  +  +   P + + Y V + +L    Q +  ++L  +M +N  + D + Y T+
Sbjct: 280 EAYEIFRRMDDEGCGP-DLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITL 338

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
           +         D   E++ +M   G MPD VT++ ++DV  K+   +E  + ++     G 
Sbjct: 339 LDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGI 398

Query: 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348
            P+   ++ L      +G  +    +L  M+S+GVQP    YN  ++  GK+G+ G A  
Sbjct: 399 LPNLHTYNTLICGLLRAGRIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVE 458

Query: 349 LFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCA 408
            F++M   G+ P+     A +    +    ++A  ++  +REN    D + YN ++   +
Sbjct: 459 TFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYS 518

Query: 409 DIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINV 468
            +G V+EA  L  +M + + C+PD     ++++     G VD A ++F+ M ++ ++  V
Sbjct: 519 KVGQVDEAVNLLSEM-IRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTV 577

Query: 469 MGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           +    L+  LGK  R+   + +F   I++   P+
Sbjct: 578 VTYNTLLSGLGKEGRVQKAIELFESMIEKKCSPN 611



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/348 (24%), Positives = 150/348 (43%), Gaps = 36/348 (10%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           Y    K+L      + +  + N+M      L+  +Y+ +I    +     EA+E + RM 
Sbjct: 160 YLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMV 219

Query: 250 KTGLMPDEVTYSAIL--------------------------DVY---------AKSGKVE 274
             GL P   TYSA++                          +VY          ++GK++
Sbjct: 220 SEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKID 279

Query: 275 EVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLL 334
           E   ++ R    G  PD + ++VL      +G  +  + +  +MK+ G +P+ V+Y TLL
Sbjct: 280 EAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLL 339

Query: 335 EAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWP 394
           +     G     +  + +M   G  PD  T T L+ +  KAR   +A   ++ MR+    
Sbjct: 340 DKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGIL 399

Query: 395 MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIE 454
            +   YNTL+      G +E+A +L   M+ S   +P  Y+Y   ++ +G  G    A+E
Sbjct: 400 PNLHTYNTLICGLLRAGRIEDALKLLGTME-SVGVQPTAYTYNIFIDYFGKSGETGKAVE 458

Query: 455 LFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            FE+M   G+  N++ C   +  L +  R+ +   +F    + G+ PD
Sbjct: 459 TFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPD 506



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 139/297 (46%), Gaps = 1/297 (0%)

Query: 224  TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
            +Y+ +I      +  ++A + F+ M   G  PD  T++ +L V+ KSGK+ E+  LY+  
Sbjct: 790  SYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEM 849

Query: 284  VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
            ++   KPD I ++++     +S + D       ++ S   +P    Y  L++ + K G+ 
Sbjct: 850  ISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRL 909

Query: 344  GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
              A  LF+EM + G  P+      LI  YGK    + A +L++RM       D   Y  L
Sbjct: 910  EEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTIL 969

Query: 404  LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
            ++     G V+EA   F ++K S    PD  +Y  ++N  G    ++ A+ L+ EM   G
Sbjct: 970  VDCLCLAGRVDEALYYFNELK-STGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRG 1028

Query: 464  VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSE 520
            +  ++     L+  LG A  ++   R++      G++PD      L+   SL E  E
Sbjct: 1029 IVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSENPE 1085



 Score =  103 bits (256), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 87/346 (25%), Positives = 161/346 (46%), Gaps = 8/346 (2%)

Query: 229  ITCAKRCNLFDEAIEWFERMYKT-GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
            + C  +  L+  A + F++  K  G+ P   +Y+ ++    +    E+   L++     G
Sbjct: 761  VLCKHKRELY--AYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVG 818

Query: 288  WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
              PD   F++L  + G+SG    +  + +EM S   +P+ + YN ++ ++ K+     A 
Sbjct: 819  CAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKAL 878

Query: 348  SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
              F ++V S   P  +T   LI    K    ++A+ L+E M +     +  ++N L+N  
Sbjct: 879  DFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGY 938

Query: 408  ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
              IG  E A +LF+ M +++  +PD  SYT +++     G VD A+  F E+   G+  +
Sbjct: 939  GKIGDTETACQLFKRM-VNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPD 997

Query: 468  VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVIT 527
             +    +I  LGK++R+++ + ++    +RG+ PD      L+  + L    E   ++  
Sbjct: 998  FIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYE 1057

Query: 528  CLQQAN--PKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRP 571
             LQ A   P +  +  LI   S   EN  E    V K+  VD   P
Sbjct: 1058 ELQLAGLEPDVFTYNALIRGYSLS-EN-PEHAYTVYKNMMVDGCNP 1101



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 102/408 (25%), Positives = 165/408 (40%), Gaps = 77/408 (18%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           QK+   F  +  +   P  TI +N  +       + +L  ++ ++M   + + D +TY+T
Sbjct: 594 QKAIELFESMIEKKCSP-NTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNT 652

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS-----LYE- 281
           +I    + N  + A  WF    K  + PD VT   +L    K G++ + +S     +Y+ 
Sbjct: 653 VIYGLIKENKVNHAF-WFFHQLKKSMHPDHVTICTLLPGLVKCGQIGDAISIARDFMYQV 711

Query: 282 --RGVASGWKPDPIAFSVLGKM-----FGESGDYDGI--------------------RYV 314
             R   S W+       V  +M     F E    +GI                     Y 
Sbjct: 712 RFRVNRSFWEDLMGGTLVEAEMDKAIIFAEELVLNGICREDSFLIPLVRVLCKHKRELYA 771

Query: 315 LQEM----KSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK 370
            Q      K LG+ P L  YN L+  + +      A  LF +M   G  PD  T   L+ 
Sbjct: 772 YQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLA 831

Query: 371 IYGKARWAKDALELWERMRENKWPMDFILYNT---------------------------- 402
           ++GK+    +  EL++ M   +   D I YN                             
Sbjct: 832 VHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRP 891

Query: 403 -------LLNMCADIGLVEEAERLFEDMKLSDY-CKPDNYSYTAMLNIYGSGGNVDNAIE 454
                  L++  A +G +EEA RLFE+M  SDY CKP+   +  ++N YG  G+ + A +
Sbjct: 892 TPRTYGPLIDGLAKVGRLEEAMRLFEEM--SDYGCKPNCAIFNILINGYGKIGDTETACQ 949

Query: 455 LFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           LF+ M   G+  ++   T L+ CL  A R+D+ +  F      G+ PD
Sbjct: 950 LFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPD 997



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/269 (27%), Positives = 126/269 (46%), Gaps = 8/269 (2%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQL-ANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
           IF +   KS   G+  +  E++ A  +V N +  +   YS       R     EA   F 
Sbjct: 442 IFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLR-----EAKTMFN 496

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
            + + GL PD VTY+ ++  Y+K G+V+E ++L    + +G +PD I  + L     ++G
Sbjct: 497 GLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAG 556

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
             D    +   MK + + P +V YNTLL  +GK G+   A  LF+ M+E   +P+  +  
Sbjct: 557 RVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIEKKCSPNTISFN 616

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
            L+  + K    + AL+++ +M       D + YNT++        V  A   F  +K S
Sbjct: 617 TLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQLKKS 676

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIEL 455
            +  PD+ +   +L      G + +AI +
Sbjct: 677 MH--PDHVTICTLLPGLVKCGQIGDAISI 703



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 101/464 (21%), Positives = 189/464 (40%), Gaps = 69/464 (14%)

Query: 82  DRTPLLSKPKSTWVNPTKPRRSVLSLQRQKRSTYSYNPRVRDLKLFARKLNDCDNTEEAF 141
           D   LL   +S  V PT                Y+YN  +     +  K  +     E F
Sbjct: 420 DALKLLGTMESVGVQPT---------------AYTYNIFID----YFGKSGETGKAVETF 460

Query: 142 --LRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRF 199
             ++A   +P+      +L  L  +   +++   FN ++   L P +++ YN+ MK    
Sbjct: 461 EKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAP-DSVTYNMMMKCYSK 519

Query: 200 GRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVT 259
             Q      L +EM+ N  E D I  +++I    +    DEA + F+RM    L P  VT
Sbjct: 520 VGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVT 579

Query: 260 YSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMK 319
           Y+ +L    K G+V++ + L+E  +     P+ I+F+ L   F ++ + +    +  +M 
Sbjct: 580 YNTLLSGLGKEGRVQKAIELFESMIEKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMT 639

Query: 320 SLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAK 379
            +  +P+++ YNT++  + K  K   A   F ++ +S + PD  T+  L+    K     
Sbjct: 640 VMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQLKKS-MHPDHVTICTLLPGLVKCGQIG 698

Query: 380 DALELWE------RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDN 433
           DA+ +        R R N+   + ++  TL+    D  ++       E++ L+  C+ D+
Sbjct: 699 DAISIARDFMYQVRFRVNRSFWEDLMGGTLVEAEMDKAII-----FAEELVLNGICREDS 753

Query: 434 Y-----------------------------------SYTAMLNIYGSGGNVDNAIELFEE 458
           +                                   SY  ++         + A +LF++
Sbjct: 754 FLIPLVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKD 813

Query: 459 MSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           M  +G A +      L+   GK+ +I +L  ++   I R  KPD
Sbjct: 814 MKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPD 857



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 80/161 (49%)

Query: 208  QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
            QL   MV+  I  D  +Y+ ++ C       DEA+ +F  +  TGL PD + Y+ I++  
Sbjct: 949  QLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGL 1008

Query: 268  AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
             KS ++EE L+LY      G  PD   ++ L    G +G  +  + + +E++  G++P++
Sbjct: 1009 GKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDV 1068

Query: 328  VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
              YN L+     +  P  A +++  M+  G  P+  T   L
Sbjct: 1069 FTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTYAQL 1109



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 126/284 (44%), Gaps = 14/284 (4%)

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
           N +LE +    K     ++F+ M +  +  D  T   + K        +    +  +MR+
Sbjct: 126 NFMLEFLRVHDKVEDMAAVFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRK 185

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
             + ++   YN L+++    G   EA  ++  M +S+  KP   +Y+A++   G   + +
Sbjct: 186 AGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRM-VSEGLKPSLKTYSALMVALGKKRDSE 244

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
             + L +EM +LG+  NV   T  I+ LG+A +ID+   +F    D G  PD  L    +
Sbjct: 245 MVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPD--LVTYTV 302

Query: 511 SVVSLCETSE-DVGKVITCLQQAN---PKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEV 566
            + +LC   + +  K +    +AN   P  V ++ L+ D    F ++ + F+      E 
Sbjct: 303 LIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLL-DKFNDFGDL-DTFKEFWSQMEA 360

Query: 567 DARRPFC---NCLIDI-CRNRNLNERAHELLYLGTLYGLYPGLH 606
           D   P       L+D+ C+ R+ +E A     +    G+ P LH
Sbjct: 361 DGYMPDVVTFTILVDVLCKARDFDE-AFATFDVMRKQGILPNLH 403


>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
 gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
          Length = 698

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/319 (27%), Positives = 161/319 (50%), Gaps = 2/319 (0%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
             + ++   L P    F +V     + GR  +   ++ +EMV   +  D ++Y+T++   
Sbjct: 214 LVDMMREGGLKPNLVTFNSVVNGICKAGR-MEDARKVFDEMVKEGLAPDGVSYNTLVGGY 272

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +     EA+  F  M + G+MPD VT+++++ V  K+G +E  + L       G + + 
Sbjct: 273 CKVGCSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNE 332

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           I F+ L   F + G  D     ++EM+   +QP++V YN L+      G+   AR L  E
Sbjct: 333 ITFTALIDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVRE 392

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M   G+ PD  T + ++  Y K      A +L ++M EN    D I Y++L+ +  +   
Sbjct: 393 MEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKR 452

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
           + +A  LF++M +S   +PD  +YT++++ +   GNV+ A+ L +EM + GV  +V+  +
Sbjct: 453 LGDAHVLFKNM-ISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYS 511

Query: 473 CLIQCLGKARRIDDLVRVF 491
            LI  L K+ R  +  R+ 
Sbjct: 512 VLINGLSKSARTKEAQRLL 530



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 131/262 (50%), Gaps = 1/262 (0%)

Query: 241 AIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGK 300
           A  +F+ M   G+ P+  TY+ ++      G  +E LS+      +G  P+ + ++ L  
Sbjct: 141 ARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSVLRDMRGAGCDPNAVTYNTLVA 200

Query: 301 MFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTP 360
            F  +G+ D    ++  M+  G++PNLV +N+++  + KAG+   AR +FDEMV+ GL P
Sbjct: 201 AFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAP 260

Query: 361 DEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLF 420
           D  +   L+  Y K   + +AL ++  M       D + + +L+++    G +E A  L 
Sbjct: 261 DGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLV 320

Query: 421 EDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK 480
            +M+     + +  ++TA+++ +   G +D+A+    EM +  +  +V+    LI     
Sbjct: 321 REMRERGL-QMNEITFTALIDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCM 379

Query: 481 ARRIDDLVRVFGVSIDRGVKPD 502
             R+D+   +      +GVKPD
Sbjct: 380 VGRMDEARELVREMEAKGVKPD 401



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 81/283 (28%), Positives = 132/283 (46%), Gaps = 18/283 (6%)

Query: 212 EMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG 271
           EM    I+   + Y+ +I         DEA E    M   G+ PD VTYS IL  Y K+G
Sbjct: 357 EMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYCKNG 416

Query: 272 KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYN 331
                  L ++ + +G  PD I +S L ++  E         + + M SLG+QP+ V Y 
Sbjct: 417 DTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYT 476

Query: 332 TLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM-RE 390
           +L++   K G    A SL DEMV++G+ PD  T + LI    K+   K+A  L  ++  E
Sbjct: 477 SLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGLSKSARTKEAQRLLFKLYHE 536

Query: 391 NKWPMDFILYNTLLNMCADI---------------GLVEEAERLFEDMKLSDYCKPDNYS 435
              P + I Y+ L+  C +                GL+ EA+++++ +   ++   D   
Sbjct: 537 EPVPAN-IKYDALMRCCRNAELKSVLALLKGFCMKGLMNEADKVYQSILDRNW-NLDGSV 594

Query: 436 YTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL 478
           Y+ +++ +   GNV  A+   ++M + G A N      LI+ L
Sbjct: 595 YSVLIHGHCREGNVMKALSFHKQMLQCGFAPNSTSTISLIRGL 637



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/288 (19%), Positives = 134/288 (46%), Gaps = 16/288 (5%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
            + YN  +       +     +L  EM +  ++ D +TYSTI++   +      A +  +
Sbjct: 367 VVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQ 426

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
           +M + G++PD +TYS+++ V  +  ++ +   L++  ++ G +PD + ++ L     + G
Sbjct: 427 QMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEG 486

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSL---------------FD 351
           + +    +  EM   GV P++V Y+ L+  + K+ +   A+ L               +D
Sbjct: 487 NVERALSLHDEMVKAGVLPDVVTYSVLINGLSKSARTKEAQRLLFKLYHEEPVPANIKYD 546

Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411
            ++      + K++ AL+K +       +A ++++ + +  W +D  +Y+ L++     G
Sbjct: 547 ALMRCCRNAELKSVLALLKGFCMKGLMNEADKVYQSILDRNWNLDGSVYSVLIHGHCREG 606

Query: 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
            V +A    + M    +  P++ S  +++      G V  A ++ +++
Sbjct: 607 NVMKALSFHKQMLQCGF-APNSTSTISLIRGLFEKGMVVEADQVIQQL 653



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 65/311 (20%), Positives = 127/311 (40%), Gaps = 53/311 (17%)

Query: 170 SYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTII 229
           S F  N    +N    + I Y+  ++ L   ++      L   M+S  ++ D +TY+++I
Sbjct: 420 SAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLI 479

Query: 230 TCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL-----YERGV 284
               +    + A+   + M K G++PD VTYS +++  +KS + +E   L     +E  V
Sbjct: 480 DGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGLSKSARTKEAQRLLFKLYHEEPV 539

Query: 285 ASGWKPDPI----------AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLL 334
            +  K D +          +   L K F   G  +    V Q +       +  VY+ L+
Sbjct: 540 PANIKYDALMRCCRNAELKSVLALLKGFCMKGLMNEADKVYQSILDRNWNLDGSVYSVLI 599

Query: 335 EAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWP 394
               + G    A S   +M++ G  P+  +  +LI+             L+E+       
Sbjct: 600 HGHCREGNVMKALSFHKQMLQCGFAPNSTSTISLIR------------GLFEK------- 640

Query: 395 MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCK-PDNYSYTAMLNIYGSGGNVDNAI 453
                           G+V EA+++ +  +L + C   D  +  A++++    GNVD  +
Sbjct: 641 ----------------GMVVEADQVIQ--QLLNCCSLADAEASKALIDLNLKEGNVDAVL 682

Query: 454 ELFEEMSELGV 464
           ++   M+  G+
Sbjct: 683 DVLHGMARDGL 693


>gi|168026089|ref|XP_001765565.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683203|gb|EDQ69615.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 505

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 98/357 (27%), Positives = 159/357 (44%), Gaps = 14/357 (3%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           Q     +  +      P  T F N+ + SL    Q +    +  +M    +  D  TY+ 
Sbjct: 82  QNGLLMYKQMLKAKFVPDHTTF-NILIDSLAKADQVEEACNVFGDMFKLNVSPDVYTYTI 140

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           +I         D  ++ FE M   G  P+  TY +++  +  +G+V+E   ++++ V  G
Sbjct: 141 LIRSLGTIGRIDAVMKLFESMTAQGCQPNLFTYHSVMHAFGSAGRVDEACDIFQQMVQKG 200

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
            +PD + +++L   FG++G  +     + + +S     N V YN+LL ++G+ G      
Sbjct: 201 LQPDAVTYNILIDAFGKTGQLERAFDFVGKSRSF---TNEVTYNSLLSSLGRKGDIQGLM 257

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
            LF +M   GL  +E T   LI+  G A   +D  +L+  M +N    D +  N +L+  
Sbjct: 258 ELFGQMKAKGLVSNELTYAILIERLGWAGRVEDVWQLYLEMVDNDIKYDIVTINNVLDCL 317

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
           +  G VE A  LF+DMK       D  +Y  ++N  G  G +D A  L  EM E G A N
Sbjct: 318 SKAGRVEAAFELFQDMKFKG-LNADTVTYNILINGLGRAGKLDAAGALLLEMEENGCAPN 376

Query: 468 VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGK 524
           ++    LI   GK   +    R+F    +RGV P+         VVS     E  GK
Sbjct: 377 IITYNTLISSYGKWSNLSAATRLFLEMKERGVAPN---------VVSYSSLIEGFGK 424



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/325 (27%), Positives = 159/325 (48%), Gaps = 8/325 (2%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           Y + ++SL    +   + +L   M +   + +  TY +++         DEA + F++M 
Sbjct: 138 YTILIRSLGTIGRIDAVMKLFESMTAQGCQPNLFTYHSVMHAFGSAGRVDEACDIFQQMV 197

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
           + GL PD VTY+ ++D + K+G++E       +   S    + + ++ L    G  GD  
Sbjct: 198 QKGLQPDAVTYNILIDAFGKTGQLERAFDFVGK---SRSFTNEVTYNSLLSSLGRKGDIQ 254

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
           G+  +  +MK+ G+  N + Y  L+E +G AG+      L+ EMV++ +  D  T+  ++
Sbjct: 255 GLMELFGQMKAKGLVSNELTYAILIERLGWAGRVEDVWQLYLEMVDNDIKYDIVTINNVL 314

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
               KA   + A EL++ M+      D + YN L+N     G ++ A  L  +M+  + C
Sbjct: 315 DCLSKAGRVEAAFELFQDMKFKGLNADTVTYNILINGLGRAGKLDAAGALLLEME-ENGC 373

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
            P+  +Y  +++ YG   N+  A  LF EM E GVA NV+  + LI+  GKA R D  + 
Sbjct: 374 APNIITYNTLISSYGKWSNLSAATRLFLEMKERGVAPNVVSYSSLIEGFGKAGRTDAAIS 433

Query: 490 VFGVSIDRGVKPD----DRLCGCLL 510
           +F      G  P+    + L  CL+
Sbjct: 434 LFREMKAEGCPPNHVTYNLLIDCLI 458



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/302 (24%), Positives = 148/302 (49%), Gaps = 4/302 (1%)

Query: 201 RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTY 260
           R++  +++L   M  +  +LD   ++T+I      N+ ++A++      K G  P   TY
Sbjct: 9   RRYDDVQRLVESMQKDRTKLDTQLFNTLIHIYGEANMMEKALQTLAAFTKEGGRPTAYTY 68

Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
           S+++ V+ K G V+  L +Y++ + + + PD   F++L     ++   +    V  +M  
Sbjct: 69  SSMIQVFMKGGDVQNGLLMYKQMLKAKFVPDHTTFNILIDSLAKADQVEEACNVFGDMFK 128

Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380
           L V P++  Y  L+ ++G  G+      LF+ M   G  P+  T  +++  +G A    +
Sbjct: 129 LNVSPDVYTYTILIRSLGTIGRIDAVMKLFESMTAQGCQPNLFTYHSVMHAFGSAGRVDE 188

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
           A +++++M +     D + YN L++     G   + ER F D         +  +Y ++L
Sbjct: 189 ACDIFQQMVQKGLQPDAVTYNILIDAFGKTG---QLERAF-DFVGKSRSFTNEVTYNSLL 244

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
           +  G  G++   +ELF +M   G+  N +    LI+ LG A R++D+ +++   +D  +K
Sbjct: 245 SSLGRKGDIQGLMELFGQMKAKGLVSNELTYAILIERLGWAGRVEDVWQLYLEMVDNDIK 304

Query: 501 PD 502
            D
Sbjct: 305 YD 306



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 125/250 (50%), Gaps = 3/250 (1%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F  +K++ L   E + Y + ++ L +  + + + QL  EMV N+I+ D +T + ++ C 
Sbjct: 259 LFGQMKAKGLVSNE-LTYAILIERLGWAGRVEDVWQLYLEMVDNDIKYDIVTINNVLDCL 317

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +    + A E F+ M   GL  D VTY+ +++   ++GK++   +L      +G  P+ 
Sbjct: 318 SKAGRVEAAFELFQDMKFKGLNADTVTYNILINGLGRAGKLDAAGALLLEMEENGCAPNI 377

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           I ++ L   +G+  +      +  EMK  GV PN+V Y++L+E  GKAG+   A SLF E
Sbjct: 378 ITYNTLISSYGKWSNLSAATRLFLEMKERGVAPNVVSYSSLIEGFGKAGRTDAAISLFRE 437

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M   G  P+  T   LI    +A     A+E    MR+    M  +  + L+ +      
Sbjct: 438 MKAEGCPPNHVTYNLLIDCLIRAGRFGAAMEYLREMRDAGCQMGKVTKSLLVRIPPQ--Y 495

Query: 413 VEEAERLFED 422
           +EEA+  F++
Sbjct: 496 MEEAQSFFQE 505



 Score = 99.0 bits (245), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 118/251 (47%), Gaps = 1/251 (0%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           F+++     F  E + YN  + SL      Q + +L  +M +  +  + +TY+ +I    
Sbjct: 225 FDFVGKSRSFTNE-VTYNSLLSSLGRKGDIQGLMELFGQMKAKGLVSNELTYAILIERLG 283

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
                ++  + +  M    +  D VT + +LD  +K+G+VE    L++     G   D +
Sbjct: 284 WAGRVEDVWQLYLEMVDNDIKYDIVTINNVLDCLSKAGRVEAAFELFQDMKFKGLNADTV 343

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
            +++L    G +G  D    +L EM+  G  PN++ YNTL+ + GK      A  LF EM
Sbjct: 344 TYNILINGLGRAGKLDAAGALLLEMEENGCAPNIITYNTLISSYGKWSNLSAATRLFLEM 403

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
            E G+ P+  + ++LI+ +GKA     A+ L+  M+    P + + YN L++     G  
Sbjct: 404 KERGVAPNVVSYSSLIEGFGKAGRTDAAISLFREMKAEGCPPNHVTYNLLIDCLIRAGRF 463

Query: 414 EEAERLFEDMK 424
             A     +M+
Sbjct: 464 GAAMEYLREMR 474



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 106/232 (45%), Gaps = 1/232 (0%)

Query: 263 ILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG 322
           +L +   + + ++V  L E       K D   F+ L  ++GE+   +     L      G
Sbjct: 1   MLTLLGAARRYDDVQRLVESMQKDRTKLDTQLFNTLIHIYGEANMMEKALQTLAAFTKEG 60

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382
            +P    Y+++++   K G       ++ +M+++   PD  T   LI    KA   ++A 
Sbjct: 61  GRPTAYTYSSMIQVFMKGGDVQNGLLMYKQMLKAKFVPDHTTFNILIDSLAKADQVEEAC 120

Query: 383 ELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNI 442
            ++  M +     D   Y  L+     IG ++   +LFE M  +  C+P+ ++Y ++++ 
Sbjct: 121 NVFGDMFKLNVSPDVYTYTILIRSLGTIGRIDAVMKLFESMT-AQGCQPNLFTYHSVMHA 179

Query: 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVS 494
           +GS G VD A ++F++M + G+  + +    LI   GK  +++      G S
Sbjct: 180 FGSAGRVDEACDIFQQMVQKGLQPDAVTYNILIDAFGKTGQLERAFDFVGKS 231


>gi|22128712|gb|AAM92824.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
           Group]
          Length = 878

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 162/335 (48%), Gaps = 3/335 (0%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
           +EM+   I  D +TYS+II    +    D+A+E    M K G+MPD +TY++IL  Y  S
Sbjct: 225 HEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSS 284

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
           G+ +E +   ++  + G +P+ + +S L     ++G     R +   M   G++P++  Y
Sbjct: 285 GQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATY 344

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
            TLL+     G      +L D MV +G+ PD      LI  Y K      A+ ++ +MR+
Sbjct: 345 RTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQ 404

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
           +    + + Y T++++    G V++A   FE M + +   P+   YT++++   +    D
Sbjct: 405 HGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQM-IDEGLTPNIIVYTSLIHGLCTCDKWD 463

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
            A EL  EM + G+ +N +    +I    K  R+ +  ++F + +  GVKPD      L+
Sbjct: 464 KAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLI 523

Query: 511 SVVSLCETSEDVGKVITCLQQAN--PKLVAFLNLI 543
               L    ++  K++  +      P +V +  LI
Sbjct: 524 DGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLI 558



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 94/356 (26%), Positives = 173/356 (48%), Gaps = 4/356 (1%)

Query: 148 IPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIE 207
           +P   T  + +  L   +   K+    N +    + P    + ++       G+  + I 
Sbjct: 233 LPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIG 292

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
            L  +M S+ +E + +TYS+++    +     EA + F+ M K GL PD  TY  +L  Y
Sbjct: 293 TL-KKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGY 351

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
           A  G + E+ +L +  V +G +PD   F++L   + +    D    V  +M+  G+ PN+
Sbjct: 352 ATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNV 411

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK-IYGKARWAKDALELWE 386
           V Y T+++ + K+G    A   F++M++ GLTP+    T+LI  +    +W K A EL  
Sbjct: 412 VCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDK-AEELIL 470

Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
            M +    ++ I +N++++     G V E+E+LF D+ +    KPD  +Y  +++     
Sbjct: 471 EMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLF-DLMVRIGVKPDIITYNTLIDGCCLA 529

Query: 447 GNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           G +D A +L   M  +GV  +++    LI    +  R+DD + +F   +  GV P+
Sbjct: 530 GKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPN 585



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/346 (23%), Positives = 153/346 (44%), Gaps = 45/346 (13%)

Query: 198 RFGRQFQLIEQLANEMVSNEIELDNITYSTIIT--CAKRCNLFDEAIEWFERMYKTGLMP 255
           R GR       L N +V     +D IT++ ++   CA +    D       RM + G +P
Sbjct: 104 RAGRLDLGFAALGN-VVKKGFRVDAITFTPLLKGLCADK-RTSDAMDIVLRRMTELGCIP 161

Query: 256 DEVTYSAILDVYAKSGKVEEVLSLY-----ERGVASGWKPDPIAFSVLGKMFGESGDYDG 310
           D  +Y+ +L       + +E L L      +RG   G  PD ++++ +   F + GD D 
Sbjct: 162 DVFSYNNLLKGLCDENRSQEALELLHMMADDRG--GGSPPDVVSYNTVLNGFFKEGDSDK 219

Query: 311 IRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK 370
                 EM   G+ P++V Y++++ A+ KA     A  + + MV++G+ PD  T  +++ 
Sbjct: 220 AYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILH 279

Query: 371 IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFE--------- 421
            Y  +   K+A+   ++MR +    + + Y++L+N     G   EA ++F+         
Sbjct: 280 GYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEP 339

Query: 422 -------------------------DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELF 456
                                    D+ + +  +PD++ +  ++  Y     VD A+ +F
Sbjct: 340 DIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVF 399

Query: 457 EEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            +M + G+  NV+    +I  L K+  +DD +  F   ID G+ P+
Sbjct: 400 SKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPN 445



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 144/334 (43%), Gaps = 36/334 (10%)

Query: 206 IEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
           +  L + MV N I+ D+  ++ +I    +    D+A+  F +M + GL P+ V Y  ++D
Sbjct: 360 MHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVID 419

Query: 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325
           V  KSG V++ +  +E+ +  G  P+ I ++ L         +D    ++ EM   G+  
Sbjct: 420 VLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICL 479

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
           N + +N+++++  K G+   +  LFD MV  G+ PD  T   LI     A    +A +L 
Sbjct: 480 NTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLL 539

Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML----- 440
             M       D + Y TL+N    +  +++A  LF++M +S    P+  +Y  +L     
Sbjct: 540 ASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEM-VSSGVSPNIITYNIILQGLFH 598

Query: 441 ------------NIYGSGGNV------------------DNAIELFEEMSELGVAINVMG 470
                       +I  SG  +                  D A+ +F+ +    + +    
Sbjct: 599 TRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRT 658

Query: 471 CTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR 504
              +I  L K  R+D+   +F      G+ PD R
Sbjct: 659 FNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVR 692



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 73/327 (22%), Positives = 152/327 (46%), Gaps = 7/327 (2%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           TY+ +I C  R    D        + K G   D +T++ +L       +  + + +  R 
Sbjct: 94  TYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRR 153

Query: 284 VAS-GWKPDPIAFSVLGKMFGE---SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
           +   G  PD  +++ L K   +   S +   + +++ + +  G  P++V YNT+L    K
Sbjct: 154 MTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFK 213

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
            G    A S + EM++ G+ PD  T +++I    KA+    A+E+   M +N    D + 
Sbjct: 214 EGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMT 273

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           YN++L+     G  +EA    + M+ SD  +P+  +Y++++N     G    A ++F+ M
Sbjct: 274 YNSILHGYCSSGQPKEAIGTLKKMR-SDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSM 332

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETS 519
           ++ G+  ++     L+Q       + ++  +  + +  G++PD  +   L+   +  E  
Sbjct: 333 TKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKV 392

Query: 520 EDVGKVITCLQQA--NPKLVAFLNLIE 544
           +    V + ++Q   NP +V +  +I+
Sbjct: 393 DQAMLVFSKMRQHGLNPNVVCYGTVID 419



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 73/320 (22%), Positives = 143/320 (44%), Gaps = 15/320 (4%)

Query: 170 SYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTII 229
           +  +F  +  + L P   I Y   +  L    ++   E+L  EM+   I L+ I +++II
Sbjct: 430 AMLYFEQMIDEGLTP-NIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSII 488

Query: 230 TCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWK 289
               +     E+ + F+ M + G+ PD +TY+ ++D    +GK++E   L    V+ G K
Sbjct: 489 DSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVK 548

Query: 290 PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSL 349
           PD + +  L   +      D    + +EM S GV PN++ YN +L+ +    +   A+ L
Sbjct: 549 PDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKEL 608

Query: 350 FDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCAD 409
           +  + +SG   +  T   ++    K     +AL +++ +      ++   +N ++     
Sbjct: 609 YVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLK 668

Query: 410 IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVM 469
            G ++EA+ LF     ++   PD  +Y+ M       G+++   +LF  M E G      
Sbjct: 669 CGRMDEAKDLFAAHS-ANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENG------ 721

Query: 470 GCTCLIQCLGKARRIDDLVR 489
                  C   +R ++ +VR
Sbjct: 722 -------CSADSRMLNSIVR 734



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 79/183 (43%), Gaps = 3/183 (1%)

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382
           V P +  Y  L+    +AG+  L  +    +V+ G   D  T T L+K     +   DA+
Sbjct: 88  VTPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAM 147

Query: 383 EL-WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK--LSDYCKPDNYSYTAM 439
           ++   RM E     D   YN LL    D    +EA  L   M         PD  SY  +
Sbjct: 148 DIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTV 207

Query: 440 LNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGV 499
           LN +   G+ D A   + EM + G+  +V+  + +I  L KA+ +D  + V    +  GV
Sbjct: 208 LNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGV 267

Query: 500 KPD 502
            PD
Sbjct: 268 MPD 270



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/169 (21%), Positives = 80/169 (47%), Gaps = 1/169 (0%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F  + S  + P   I YN+ ++ L   R+    ++L   +  +  +L+  TY+ I+   
Sbjct: 573 LFKEMVSSGVSP-NIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGL 631

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            + NL DEA+  F+ +  T L  +  T++ ++    K G+++E   L+    A+G  PD 
Sbjct: 632 CKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDV 691

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG 341
             +S++ +   E G  + +  +   M+  G   +  + N+++  + + G
Sbjct: 692 RTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRG 740



 Score = 40.0 bits (92), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 27/123 (21%), Positives = 54/123 (43%)

Query: 185 METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEW 244
           +E   YN+ +  L          ++   +   +++L+  T++ +I    +C   DEA + 
Sbjct: 619 LELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDL 678

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
           F      GL+PD  TYS + +   + G +EE+  L+     +G   D    + + +   +
Sbjct: 679 FAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQ 738

Query: 305 SGD 307
            GD
Sbjct: 739 RGD 741


>gi|22330179|ref|NP_683419.1| ABA Overly-Sensitive 5 protein [Arabidopsis thaliana]
 gi|75216707|sp|Q9ZU27.1|PPR76_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g51965, mitochondrial; Flags: Precursor
 gi|4220445|gb|AAD12672.1| Similar to gi|3004555 F19F24.14 salt inducible protein homolog from
           Arabidopsis thaliana BAC gb|AC003673 [Arabidopsis
           thaliana]
 gi|332194619|gb|AEE32740.1| ABA Overly-Sensitive 5 protein [Arabidopsis thaliana]
          Length = 650

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 87/317 (27%), Positives = 166/317 (52%), Gaps = 12/317 (3%)

Query: 190 YNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERM 248
           Y + ++++ R G+  + +  L NEM++  + L+ + Y+T++    +  + D+AI+ F RM
Sbjct: 273 YTIMIRTMGRIGKCDEAV-GLFNEMITEGLTLNVVGYNTLMQVLAKGKMVDKAIQVFSRM 331

Query: 249 YKTGLMPDEVTYSAILDVYAKSG---KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
            +TG  P+E TYS +L++    G   +++ V+ + +R +  G       +S L +   + 
Sbjct: 332 VETGCRPNEYTYSLLLNLLVAEGQLVRLDGVVEISKRYMTQG------IYSYLVRTLSKL 385

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G       +  +M S  V+     Y ++LE++  AGK   A  +  ++ E G+  D    
Sbjct: 386 GHVSEAHRLFCDMWSFPVKGERDSYMSMLESLCGAGKTIEAIEMLSKIHEKGVVTDTMMY 445

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
             +    GK +      +L+E+M+++    D   YN L+     +G V+EA  +FE+++ 
Sbjct: 446 NTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAINIFEELER 505

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
           SD CKPD  SY +++N  G  G+VD A   F+EM E G+  +V+  + L++C GK  R++
Sbjct: 506 SD-CKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTERVE 564

Query: 486 DLVRVFGVSIDRGVKPD 502
               +F   + +G +P+
Sbjct: 565 MAYSLFEEMLVKGCQPN 581



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 108/204 (52%), Gaps = 1/204 (0%)

Query: 200 GRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVT 259
           G+  + IE L+ ++    +  D + Y+T+ +   +        + FE+M K G  PD  T
Sbjct: 421 GKTIEAIEMLS-KIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFT 479

Query: 260 YSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMK 319
           Y+ ++  + + G+V+E ++++E    S  KPD I+++ L    G++GD D      +EM+
Sbjct: 480 YNILIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQ 539

Query: 320 SLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAK 379
             G+ P++V Y+TL+E  GK  +  +A SLF+EM+  G  P+  T   L+    K     
Sbjct: 540 EKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKNGRTA 599

Query: 380 DALELWERMRENKWPMDFILYNTL 403
           +A++L+ +M++     D I Y  L
Sbjct: 600 EAVDLYSKMKQQGLTPDSITYTVL 623



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/195 (30%), Positives = 101/195 (51%), Gaps = 4/195 (2%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           +T+ YN    +L   +Q   I  L  +M  +    D  TY+ +I    R    DEAI  F
Sbjct: 441 DTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAINIF 500

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           E + ++   PD ++Y+++++   K+G V+E    ++     G  PD + +S L + FG++
Sbjct: 501 EELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKT 560

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
              +    + +EM   G QPN+V YN LL+ + K G+   A  L+ +M + GLTPD  T 
Sbjct: 561 ERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKNGRTAEAVDLYSKMKQQGLTPDSITY 620

Query: 366 TALIKI----YGKAR 376
           T L ++    +GK+R
Sbjct: 621 TVLERLQSVSHGKSR 635



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 99/200 (49%), Gaps = 1/200 (0%)

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           EAIE   ++++ G++ D + Y+ +     K  ++  +  L+E+    G  PD   +++L 
Sbjct: 425 EAIEMLSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILI 484

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
             FG  G+ D    + +E++    +P+++ YN+L+  +GK G    A   F EM E GL 
Sbjct: 485 ASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLN 544

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
           PD  T + L++ +GK    + A  L+E M       + + YN LL+     G   EA  L
Sbjct: 545 PDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKNGRTAEAVDL 604

Query: 420 FEDMKLSDYCKPDNYSYTAM 439
           +  MK      PD+ +YT +
Sbjct: 605 YSKMKQQG-LTPDSITYTVL 623



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 132/289 (45%), Gaps = 13/289 (4%)

Query: 217 EIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV 276
           ++++++ TY  ++    R   + +A + +  + + G   D   Y+ +LD  AK    E+ 
Sbjct: 198 DLKMNSFTYKCLLQAYLRSRDYSKAFDVYCEIRRGGHKLDIFAYNMLLDALAKD---EKA 254

Query: 277 LSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA 336
             ++E       + D   ++++ +  G  G  D    +  EM + G+  N+V YNTL++ 
Sbjct: 255 CQVFEDMKKRHCRRDEYTYTIMIRTMGRIGKCDEAVGLFNEMITEGLTLNVVGYNTLMQV 314

Query: 337 MGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIY---GKARWAKDALELWERMRENKW 393
           + K      A  +F  MVE+G  P+E T + L+ +    G+       +E+ +R      
Sbjct: 315 LAKGKMVDKAIQVFSRMVETGCRPNEYTYSLLLNLLVAEGQLVRLDGVVEISKRY----- 369

Query: 394 PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAI 453
            M   +Y+ L+   + +G V EA RLF DM  S   K +  SY +ML      G    AI
Sbjct: 370 -MTQGIYSYLVRTLSKLGHVSEAHRLFCDM-WSFPVKGERDSYMSMLESLCGAGKTIEAI 427

Query: 454 ELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           E+  ++ E GV  + M    +   LGK ++I  +  +F      G  PD
Sbjct: 428 EMLSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPD 476



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 101/206 (49%), Gaps = 7/206 (3%)

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
           +D +R +L  M    V  N+   N L+   G      +   L  +     L  +  T   
Sbjct: 152 FDRVRSILDSMVKSNVHGNISTVNILIGFFGNTEDLQMCLRLVKKW---DLKMNSFTYKC 208

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           L++ Y ++R    A +++  +R     +D   YN LL+  A     E+A ++FEDMK   
Sbjct: 209 LLQAYLRSRDYSKAFDVYCEIRRGGHKLDIFAYNMLLDALAKD---EKACQVFEDMK-KR 264

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
           +C+ D Y+YT M+   G  G  D A+ LF EM   G+ +NV+G   L+Q L K + +D  
Sbjct: 265 HCRRDEYTYTIMIRTMGRIGKCDEAVGLFNEMITEGLTLNVVGYNTLMQVLAKGKMVDKA 324

Query: 488 VRVFGVSIDRGVKPDDRLCGCLLSVV 513
           ++VF   ++ G +P++     LL+++
Sbjct: 325 IQVFSRMVETGCRPNEYTYSLLLNLL 350



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 162/373 (43%), Gaps = 25/373 (6%)

Query: 111 KRSTYSYNPRVRDLKLFARKLNDCDNTEEAFLRAITE-IPHQPTRENALL-ILNSLKFWQ 168
           +R  Y+Y   +R +     ++  CD     F   ITE +       N L+ +L   K   
Sbjct: 267 RRDEYTYTIMIRTMG----RIGKCDEAVGLFNEMITEGLTLNVVGYNTLMQVLAKGKMVD 322

Query: 169 KSYFFFNWIKSQNLFPME---TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITY 225
           K+   F+ +      P E   ++  N+ +   +  R   ++E     M           Y
Sbjct: 323 KAIQVFSRMVETGCRPNEYTYSLLLNLLVAEGQLVRLDGVVEISKRYMTQG-------IY 375

Query: 226 STIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK----VEEVLSLYE 281
           S ++    +     EA   F  M+   +  +  +Y ++L+    +GK    +E +  ++E
Sbjct: 376 SYLVRTLSKLGHVSEAHRLFCDMWSFPVKGERDSYMSMLESLCGAGKTIEAIEMLSKIHE 435

Query: 282 RGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG 341
           +GV +        FS LGK+   S  +D    + ++MK  G  P++  YN L+ + G+ G
Sbjct: 436 KGVVTDTMMYNTVFSALGKLKQISHIHD----LFEKMKKDGPSPDIFTYNILIASFGRVG 491

Query: 342 KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYN 401
           +   A ++F+E+  S   PD  +  +LI   GK     +A   ++ M+E     D + Y+
Sbjct: 492 EVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYS 551

Query: 402 TLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461
           TL+        VE A  LFE+M L   C+P+  +Y  +L+     G    A++L+ +M +
Sbjct: 552 TLMECFGKTERVEMAYSLFEEM-LVKGCQPNIVTYNILLDCLEKNGRTAEAVDLYSKMKQ 610

Query: 462 LGVAINVMGCTCL 474
            G+  + +  T L
Sbjct: 611 QGLTPDSITYTVL 623



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 50/101 (49%)

Query: 212 EMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG 271
           EM    +  D +TYST++ C  +    + A   FE M   G  P+ VTY+ +LD   K+G
Sbjct: 537 EMQEKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKNG 596

Query: 272 KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIR 312
           +  E + LY +    G  PD I ++VL ++   S     IR
Sbjct: 597 RTAEAVDLYSKMKQQGLTPDSITYTVLERLQSVSHGKSRIR 637


>gi|449481246|ref|XP_004156125.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g02150-like [Cucumis
           sativus]
          Length = 822

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 99/394 (25%), Positives = 180/394 (45%), Gaps = 24/394 (6%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNE--------IELDNIT 224
           FF W  SQ  F   T  Y + +  +   R +        E++ N           + ++ 
Sbjct: 90  FFKWAGSQVGFRHTTESYCIIVHLVFRARMYTDAHDTVKEVIMNSRMDMGFPVCNIFDML 149

Query: 225 YSTIITCAKRCNLFD-------------EAIEWFERMYKTGLMPDEVTYSAILDVYAKSG 271
           +ST   C     +FD             EA E F RM     +P   + + +L   +KSG
Sbjct: 150 WSTRNICVSGSGVFDVLFSVFVELGLLEEANECFSRMRNFRTLPKARSCNFLLHRLSKSG 209

Query: 272 KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYN 331
             + V   +   + +G  P    ++V+     + GD +  R +  +M+ +G+ P++V YN
Sbjct: 210 NGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYN 269

Query: 332 TLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN 391
           +L++  GK G      SLF+EM + G  PD  T   LI  Y K      A E +  M+ N
Sbjct: 270 SLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNN 329

Query: 392 KWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDN 451
               + + Y+TL++     G+++ A +L  DM+ +    P+ ++YT++++     GN+  
Sbjct: 330 GLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLL-PNEFTYTSLIDANCKAGNLTE 388

Query: 452 AIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
           A +L  +M + GV +N++  T L+  L KA R+ +   VF   +  G+ P+ ++   L+ 
Sbjct: 389 AWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVH 448

Query: 512 VVSLCETSEDVGKVITCLQQAN--PKLVAFLNLI 543
                E  ED  K++  + + N  P L+ + ++I
Sbjct: 449 GYIKAERMEDAMKILKQMTECNIKPDLILYGSII 482



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/344 (27%), Positives = 168/344 (48%), Gaps = 5/344 (1%)

Query: 206 IEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
           +  L NEM       D ITY+ +I C  +      A E+F  M   GL P+ VTYS ++D
Sbjct: 284 VASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLID 343

Query: 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325
            + K G ++  + L      +G  P+   ++ L     ++G+      +L +M   GV+ 
Sbjct: 344 AFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKL 403

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
           N+V Y  LL+ + KAG+   A  +F  M++ G++P+++  TAL+  Y KA   +DA+++ 
Sbjct: 404 NIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKIL 463

Query: 386 ERMRENKWPMDFILYNTLL-NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYG 444
           ++M E     D ILY +++   C+   L EE + + E+MK S     +    T +++ Y 
Sbjct: 464 KQMTECNIKPDLILYGSIIWGHCSQRKL-EETKLILEEMK-SRGISANPVISTTIIDAYF 521

Query: 445 SGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR 504
             G   +A+  F+EM ++GV   ++    LI  L +A  ++  V  F   +  G++P+  
Sbjct: 522 KAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCEAGIVELAVDYFCRMLSLGLQPNVA 581

Query: 505 LCGCLLSVVSLCETSEDVGKVITCLQ--QANPKLVAFLNLIEDN 546
           +   L+  +      E   K+   +Q     P + AF  LI+ N
Sbjct: 582 VYTSLIDGLCXNNCIESAKKLFDEMQCRGMTPDITAFTALIDGN 625



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 153/303 (50%), Gaps = 1/303 (0%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           +L N+M+   ++L+ +TY+ ++    +     EA E F  M K G+ P++  Y+A++  Y
Sbjct: 391 KLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGY 450

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            K+ ++E+ + + ++      KPD I +  +          +  + +L+EMKS G+  N 
Sbjct: 451 IKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANP 510

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
           V+  T+++A  KAGK   A + F EM + G+     T   LI    +A   + A++ + R
Sbjct: 511 VISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCEAGIVELAVDYFCR 570

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           M       +  +Y +L++       +E A++LF++M+      PD  ++TA+++     G
Sbjct: 571 MLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRGM-TPDITAFTALIDGNLKHG 629

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCG 507
           N+  A+ L   M+EL +  ++   T L+    +   +    + F   I++G+ P++ LC 
Sbjct: 630 NLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPEEVLCI 689

Query: 508 CLL 510
           CLL
Sbjct: 690 CLL 692



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 87/187 (46%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
            EM    +E   +TY  +I       + + A+++F RM   GL P+   Y++++D    +
Sbjct: 534 QEMQDVGVEATIVTYCVLIDGLCEAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCXN 593

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
             +E    L++     G  PD  AF+ L     + G+      ++  M  L ++ +L VY
Sbjct: 594 NCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVY 653

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
            +L+    + G+   AR  F+EM+E G+ P+E     L++ Y K     +A+EL   M  
Sbjct: 654 TSLVSGFSQCGELHQARKFFNEMIEKGILPEEVLCICLLREYYKRGQLDEAIELKNEMER 713

Query: 391 NKWPMDF 397
             +  +F
Sbjct: 714 MAYSFEF 720


>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
 gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
          Length = 471

 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 98/355 (27%), Positives = 169/355 (47%), Gaps = 6/355 (1%)

Query: 152 PTRENALLILNSLKFWQK---SYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           P R    ++L S     K    Y  F  +    + P + I YN+ +       +     +
Sbjct: 6   PNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISP-DGIEYNILIDGYAKKGRVDEANR 64

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  EMVS  +E    TY++++    +     EA+E F+ M + G  PD VTYS I+    
Sbjct: 65  LYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLC 124

Query: 269 KSGKVEEVLS-LYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
           K+GKV E L  L+ + +  G   + +A++ L     +  + +    +L+EM S G  P+ 
Sbjct: 125 KTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDN 184

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
           + YNT+L  + + GK   A+  FD M   G +PD      L+    K     +A++L++ 
Sbjct: 185 ITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKD 244

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           +    +  D + YN++L   A    ++EAE +F+ M  S  C P+  +Y+ +L+ +    
Sbjct: 245 VIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASG-CAPNGATYSIVLSGHCRAK 303

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            VD+A ++ EEMS++G   +V+    L+  L K   +D    +F   +D G  PD
Sbjct: 304 KVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPD 358



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 90/312 (28%), Positives = 139/312 (44%), Gaps = 36/312 (11%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
           T+ YN  +  L      +   +L  EM S     DNITY+TI++   R     EA ++F+
Sbjct: 149 TVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLCRMGKVSEAKQFFD 208

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS--VLG----- 299
            M   G  PD V Y+ +LD   K GK +E + L++  +A G+ PD + ++  +LG     
Sbjct: 209 SMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKS 268

Query: 300 ----------KMFGESGDYDGIRY------------------VLQEMKSLGVQPNLVVYN 331
                     KM       +G  Y                  VL+EM  +G  P++V YN
Sbjct: 269 NMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYN 328

Query: 332 TLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN 391
            LL+ + K      A  LF  MV++G  PD  + + ++    K     DA  L++RM E 
Sbjct: 329 ILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIER 388

Query: 392 KWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDN 451
           K   D + +N L++     G ++EA+ L + M  S  C PD  +Y  ++N     G    
Sbjct: 389 KLVPDVVTFNILMDGLCKAGKLDEAKDLLDQMTCSG-CAPDYVAYNTLMNGLRKQGRHIQ 447

Query: 452 AIELFEEMSELG 463
           A  L + M E G
Sbjct: 448 ADRLTQAMKEKG 459



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 152/321 (47%), Gaps = 2/321 (0%)

Query: 183 FPMETIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEA 241
           F  + + Y+  +  L + G+  + +E L ++M+      + + Y+ +I    +    + A
Sbjct: 109 FEPDVVTYSTIISGLCKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERA 168

Query: 242 IEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKM 301
            +  E M   G +PD +TY+ IL    + GKV E    ++   + G+ PD +A++ L   
Sbjct: 169 YKLLEEMASKGYVPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDA 228

Query: 302 FGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD 361
             + G  D    + +++ + G  P+ V YN++L  + +      A  +F +MV SG  P+
Sbjct: 229 LYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPN 288

Query: 362 EKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFE 421
             T + ++  + +A+   DA ++ E M +     D + YN LL+      LV++A  LF 
Sbjct: 289 GATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFS 348

Query: 422 DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
            M + + C PD  SY+ +LN       V +A  LF+ M E  +  +V+    L+  L KA
Sbjct: 349 TM-VDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKA 407

Query: 482 RRIDDLVRVFGVSIDRGVKPD 502
            ++D+   +       G  PD
Sbjct: 408 GKLDEAKDLLDQMTCSGCAPD 428



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 147/308 (47%), Gaps = 4/308 (1%)

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           +  + FE+M   G+ PD + Y+ ++D YAK G+V+E   LYE  V+ G +P    ++ L 
Sbjct: 26  DGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANRLYEEMVSVGLEPSIYTYNSLL 85

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA-RSLFDEMVESGL 358
             F +         + + M   G +P++V Y+T++  + K GK   A   LF +M+E G 
Sbjct: 86  NAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCKTGKVTEALEMLFHKMIERGC 145

Query: 359 TPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAER 418
           + +     ALI    K    + A +L E M    +  D I YNT+L+    +G V EA++
Sbjct: 146 SANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLCRMGKVSEAKQ 205

Query: 419 LFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL 478
            F+ M    Y  PD  +Y  +L+     G  D A++LF+++   G   + +    ++  L
Sbjct: 206 FFDSMPSRGY-SPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSILLGL 264

Query: 479 GKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ--ANPKL 536
            +   +D+   +F   +  G  P+      +LS     +  +D  KV+  + +  A P +
Sbjct: 265 ARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDV 324

Query: 537 VAFLNLIE 544
           V +  L++
Sbjct: 325 VTYNILLD 332



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 105/224 (46%), Gaps = 1/224 (0%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F  + ++   P +T+ YN  +  L         E++  +MV++    +  TYS +++  
Sbjct: 241 LFKDVIAKGYMP-DTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGH 299

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            R    D+A +  E M K G +PD VTY+ +LD   K+  V++   L+   V +G  PD 
Sbjct: 300 CRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDI 359

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           +++SV+     ++      R +   M    + P++V +N L++ + KAGK   A+ L D+
Sbjct: 360 VSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDQ 419

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMD 396
           M  SG  PD      L+    K      A  L + M+E  +  D
Sbjct: 420 MTCSGCAPDYVAYNTLMNGLRKQGRHIQADRLTQAMKEKGFLSD 463


>gi|224135699|ref|XP_002322139.1| predicted protein [Populus trichocarpa]
 gi|222869135|gb|EEF06266.1| predicted protein [Populus trichocarpa]
          Length = 866

 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 116/462 (25%), Positives = 213/462 (46%), Gaps = 17/462 (3%)

Query: 199 FGRQFQL--IEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPD 256
           FG+  +L  + +L  EM S     +  +Y+ ++    R    ++A   F  M + G +P+
Sbjct: 294 FGKLNRLDKVSELLKEMASTGNVPEISSYNVLLEAYARIGNIEDATGVFRLMQEAGCVPN 353

Query: 257 EVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQ 316
             TYS +L +Y K G+ +EV  L+     S  +PD   ++ L  +FGE G +  +  +  
Sbjct: 354 AETYSILLGLYGKHGRYDEVRELFLEMKVSNTEPDAATYNTLIDVFGEGGYFKEVVTLFH 413

Query: 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
           +M    V+PN+  Y  L+ A GK G    A+ +   M E G+ P  K  T +I+ YG+A 
Sbjct: 414 DMAEENVEPNMETYEGLIFACGKGGLHDDAKKILLHMSEKGMIPSSKAYTGVIEAYGQAA 473

Query: 377 WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY-CKPDNYS 435
             ++AL     M E         YNTL+ M A  GL +E E +   +K+ D+    +  S
Sbjct: 474 MYEEALVTLNTMNEMGSKPTIETYNTLIYMFARGGLYKETEAIL--LKMGDFGVARERDS 531

Query: 436 YTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSI 495
           +  ++  +  GG  + AI+ + EM +  +  +      ++     A  +D+ V  F    
Sbjct: 532 FNGVIEGFRQGGQFEEAIKAYVEMEKSRLVPDERTLEAVLSVYCIAGLVDESVEQFQEIK 591

Query: 496 DRGVKPDDRLCGCLLSVV-----SLCETSEDVGKVITCLQQANPKLVAFLNLIE---DNS 547
             G+ P + +C C++  V        E  E + +++T       +++    +I+   D+ 
Sbjct: 592 ASGILP-NVMCYCMMLAVYAKSDRWNEAYELLDEMLTNRASNIHQVIG--QMIKGDFDDD 648

Query: 548 TGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHN 607
           + ++ ++  F  +  +      R F N L++        ERA  +L   T  G +P L  
Sbjct: 649 SNWQMVEYVFDKLNSEGCGLGMR-FYNTLLEALWWLGQKERAVRVLGEATKRGHFPELFR 707

Query: 608 KTLDEWSLDVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQL 649
           K+   WS+D+  +  G+A TA+  W+  + +I +  + +PQL
Sbjct: 708 KSKLVWSVDIHRMWEGSAYTAISVWLNNMYEIFMNRQDIPQL 749



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/275 (27%), Positives = 133/275 (48%), Gaps = 2/275 (0%)

Query: 190 YNVTMKS-LRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERM 248
           YN  + S  R G  ++ +  L  EM    I+ D +TY+T++       L DEA   F  M
Sbjct: 216 YNTVINSCARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLCACSNRGLGDEAEMVFRTM 275

Query: 249 YKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY 308
            + G++PD  TY+ ++D + K  ++++V  L +   ++G  P+  +++VL + +   G+ 
Sbjct: 276 NEGGVVPDITTYTYLVDTFGKLNRLDKVSELLKEMASTGNVPEISSYNVLLEAYARIGNI 335

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
           +    V + M+  G  PN   Y+ LL   GK G+    R LF EM  S   PD  T   L
Sbjct: 336 EDATGVFRLMQEAGCVPNAETYSILLGLYGKHGRYDEVRELFLEMKVSNTEPDAATYNTL 395

Query: 369 IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428
           I ++G+  + K+ + L+  M E     +   Y  L+  C   GL ++A+++   M     
Sbjct: 396 IDVFGEGGYFKEVVTLFHDMAEENVEPNMETYEGLIFACGKGGLHDDAKKILLHMSEKGM 455

Query: 429 CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
             P + +YT ++  YG     + A+     M+E+G
Sbjct: 456 I-PSSKAYTGVIEAYGQAAMYEEALVTLNTMNEMG 489



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 161/343 (46%), Gaps = 10/343 (2%)

Query: 167 WQKSYFFFNWIKSQNLF-PMETIFYNVTMKSLRFGRQFQLIEQLAN---EMVSNEIELDN 222
           WQ+S   F  ++ Q    P E I+    M SL  GR+  L+E+ ++   EM ++ +    
Sbjct: 123 WQRSLRLFKHMQRQIWCKPNEHIY--TIMISL-LGRE-GLLEKCSDIFEEMGAHGVSRSV 178

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG-KVEEVLSLYE 281
            +Y+ +I    R   ++ ++E  ERM K  + P  +TY+ +++  A+ G   E +L L+ 
Sbjct: 179 FSYTALINSYGRNGKYEVSLELLERMKKERVSPSILTYNTVINSCARGGLDWEGLLGLFA 238

Query: 282 RGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG 341
                G +PD + ++ L       G  D    V + M   GV P++  Y  L++  GK  
Sbjct: 239 EMRHEGIQPDIVTYNTLLCACSNRGLGDEAEMVFRTMNEGGVVPDITTYTYLVDTFGKLN 298

Query: 342 KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYN 401
           +      L  EM  +G  P+  +   L++ Y +    +DA  ++  M+E     +   Y+
Sbjct: 299 RLDKVSELLKEMASTGNVPEISSYNVLLEAYARIGNIEDATGVFRLMQEAGCVPNAETYS 358

Query: 402 TLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461
            LL +    G  +E   LF +MK+S+  +PD  +Y  +++++G GG     + LF +M+E
Sbjct: 359 ILLGLYGKHGRYDEVRELFLEMKVSN-TEPDAATYNTLIDVFGEGGYFKEVVTLFHDMAE 417

Query: 462 LGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR 504
             V  N+     LI   GK    DD  ++     ++G+ P  +
Sbjct: 418 ENVEPNMETYEGLIFACGKGGLHDDAKKILLHMSEKGMIPSSK 460



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 136/292 (46%), Gaps = 10/292 (3%)

Query: 295 FSVLGKMFGESGDYD-GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
           F+++ K F + GD+   +R      + +  +PN  +Y  ++  +G+ G       +F+EM
Sbjct: 110 FALVFKEFAQRGDWQRSLRLFKHMQRQIWCKPNEHIYTIMISLLGREGLLEKCSDIFEEM 169

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
              G++    + TALI  YG+    + +LEL ERM++ +     + YNT++N CA  GL 
Sbjct: 170 GAHGVSRSVFSYTALINSYGRNGKYEVSLELLERMKKERVSPSILTYNTVINSCARGGLD 229

Query: 414 EEA-ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
            E    LF +M+  +  +PD  +Y  +L    + G  D A  +F  M+E GV  ++   T
Sbjct: 230 WEGLLGLFAEMR-HEGIQPDIVTYNTLLCACSNRGLGDEAEMVFRTMNEGGVVPDITTYT 288

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQA 532
            L+   GK  R+D +  +       G  P+      LL   +     ED   V   +Q+A
Sbjct: 289 YLVDTFGKLNRLDKVSELLKEMASTGNVPEISSYNVLLEAYARIGNIEDATGVFRLMQEA 348

Query: 533 ----NPKLVAFLNLIEDNSTGFENIKEEFRNV-IKDTEVDARRPFCNCLIDI 579
               N +  + L  +      ++ ++E F  + + +TE DA     N LID+
Sbjct: 349 GCVPNAETYSILLGLYGKHGRYDEVRELFLEMKVSNTEPDA--ATYNTLIDV 398



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 77/328 (23%), Positives = 135/328 (41%), Gaps = 39/328 (11%)

Query: 255 PDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYV 314
           P+E  Y+ ++ +  + G +E+   ++E   A G      +++ L   +G +G Y+    +
Sbjct: 141 PNEHIYTIMISLLGREGLLEKCSDIFEEMGAHGVSRSVFSYTALINSYGRNGKYEVSLEL 200

Query: 315 LQEMKSLGVQPNLVVYNTLLEAMGKAG------------------KPGLA---------- 346
           L+ MK   V P+++ YNT++ +  + G                  +P +           
Sbjct: 201 LERMKKERVSPSILTYNTVINSCARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLCACS 260

Query: 347 -RSLFDE-------MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFI 398
            R L DE       M E G+ PD  T T L+  +GK        EL + M       +  
Sbjct: 261 NRGLGDEAEMVFRTMNEGGVVPDITTYTYLVDTFGKLNRLDKVSELLKEMASTGNVPEIS 320

Query: 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458
            YN LL   A IG +E+A  +F  M+ +  C P+  +Y+ +L +YG  G  D   ELF E
Sbjct: 321 SYNVLLEAYARIGNIEDATGVFRLMQEAG-CVPNAETYSILLGLYGKHGRYDEVRELFLE 379

Query: 459 MSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCET 518
           M       +      LI   G+     ++V +F    +  V+P+      L+        
Sbjct: 380 MKVSNTEPDAATYNTLIDVFGEGGYFKEVVTLFHDMAEENVEPNMETYEGLIFACGKGGL 439

Query: 519 SEDVGKVITCLQQAN--PKLVAFLNLIE 544
            +D  K++  + +    P   A+  +IE
Sbjct: 440 HDDAKKILLHMSEKGMIPSSKAYTGVIE 467



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 69/313 (22%), Positives = 134/313 (42%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN  +     G  F+ +  L ++M    +E +  TY  +I    +  L D+A +    M 
Sbjct: 392 YNTLIDVFGEGGYFKEVVTLFHDMAEENVEPNMETYEGLIFACGKGGLHDDAKKILLHMS 451

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
           + G++P    Y+ +++ Y ++   EE L         G KP    ++ L  MF   G Y 
Sbjct: 452 EKGMIPSSKAYTGVIEAYGQAAMYEEALVTLNTMNEMGSKPTIETYNTLIYMFARGGLYK 511

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               +L +M   GV      +N ++E   + G+   A   + EM +S L PDE+TL A++
Sbjct: 512 ETEAILLKMGDFGVARERDSFNGVIEGFRQGGQFEEAIKAYVEMEKSRLVPDERTLEAVL 571

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
            +Y  A    +++E ++ ++ +    + + Y  +L + A      EA  L ++M  +   
Sbjct: 572 SVYCIAGLVDESVEQFQEIKASGILPNVMCYCMMLAVYAKSDRWNEAYELLDEMLTNRAS 631

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
                    +   +    N      +F++++  G  + +     L++ L    + +  VR
Sbjct: 632 NIHQVIGQMIKGDFDDDSNWQMVEYVFDKLNSEGCGLGMRFYNTLLEALWWLGQKERAVR 691

Query: 490 VFGVSIDRGVKPD 502
           V G +  RG  P+
Sbjct: 692 VLGEATKRGHFPE 704


>gi|357124917|ref|XP_003564143.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
           chloroplastic-like [Brachypodium distachyon]
          Length = 1285

 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 83/270 (30%), Positives = 134/270 (49%), Gaps = 1/270 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D ITY+T+I+   + +  D+A+  FE M  +   PD  TY+A++ V+ + GK ++   ++
Sbjct: 134 DVITYNTLISACSQGSNLDDAVAVFEEMMASECRPDLWTYNAMVSVHGRCGKAQDAERMF 193

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
              V  G+KPD + ++ L   F + GD D +  V +E+   G + + + YNT++   GK 
Sbjct: 194 RELVEKGFKPDAVTYNSLLYAFAKEGDADTVERVCEELVRAGFKKDGITYNTMIHMYGKM 253

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G+  LA  L+DEM   G TPD  T T LI   GK     DA ++ E M +       + +
Sbjct: 254 GRLDLALGLYDEMRALGCTPDAVTYTVLIDSLGKMDRISDAGKVLEEMADAGLKPTLVTF 313

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           + L+   A  G  EEA R F  M  S   KPD  +Y  ML+I    G++   + L++ M 
Sbjct: 314 SALICAYAKGGRREEAVRTFSHMVASG-VKPDRLAYLVMLDIIARSGDMRKLMALYQTMM 372

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRV 490
             G   +      ++  L K    D++  V
Sbjct: 373 NDGYRPDNALYQVMLAALAKGNEYDEIEAV 402



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/362 (26%), Positives = 172/362 (47%), Gaps = 8/362 (2%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + I YN  + +   G        +  EM+++E   D  TY+ +++   RC    +A   F
Sbjct: 134 DVITYNTLISACSQGSNLDDAVAVFEEMMASECRPDLWTYNAMVSVHGRCGKAQDAERMF 193

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
             + + G  PD VTY+++L  +AK G  + V  + E  V +G+K D I ++ +  M+G+ 
Sbjct: 194 RELVEKGFKPDAVTYNSLLYAFAKEGDADTVERVCEELVRAGFKKDGITYNTMIHMYGKM 253

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G  D    +  EM++LG  P+ V Y  L++++GK  +   A  + +EM ++GL P   T 
Sbjct: 254 GRLDLALGLYDEMRALGCTPDAVTYTVLIDSLGKMDRISDAGKVLEEMADAGLKPTLVTF 313

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
           +ALI  Y K    ++A+  +  M  +    D + Y  +L++ A  G + +   L++ M +
Sbjct: 314 SALICAYAKGGRREEAVRTFSHMVASGVKPDRLAYLVMLDIIARSGDMRKLMALYQTM-M 372

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
           +D  +PDN  Y  ML     G   D    + ++M      +  M    +   L KA  I 
Sbjct: 373 NDGYRPDNALYQVMLAALAKGNEYDEIEAVVQDME----VVCQMNPQLVSSILIKAECIS 428

Query: 486 DLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIED 545
              ++   +  +G +PD +    LLS++   ET+    + ++ LQ     + +  NLI +
Sbjct: 429 QGAKLLKKACLQGHEPDSK---SLLSILDAYETTGKHEEGLSLLQFIREHVPSSCNLISE 485

Query: 546 NS 547
            S
Sbjct: 486 CS 487



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/354 (22%), Positives = 171/354 (48%), Gaps = 6/354 (1%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKR--CNLFDEAIEWFER 247
           +N  M       +F  + QL + M   E+E D ++++T+I    +  C     A +    
Sbjct: 66  FNAMMGVYARSGRFDDVRQLLDAMRGQELEPDLVSFNTLINARAKSGCLAPGSAFDLLLE 125

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           + + GL PD +TY+ ++   ++   +++ ++++E  +AS  +PD   ++ +  + G  G 
Sbjct: 126 VRQVGLRPDVITYNTLISACSQGSNLDDAVAVFEEMMASECRPDLWTYNAMVSVHGRCGK 185

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
                 + +E+   G +P+ V YN+LL A  K G       + +E+V +G   D  T   
Sbjct: 186 AQDAERMFRELVEKGFKPDAVTYNSLLYAFAKEGDADTVERVCEELVRAGFKKDGITYNT 245

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           +I +YGK      AL L++ MR      D + Y  L++    +  + +A ++ E+M  + 
Sbjct: 246 MIHMYGKMGRLDLALGLYDEMRALGCTPDAVTYTVLIDSLGKMDRISDAGKVLEEMADAG 305

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
             KP   +++A++  Y  GG  + A+  F  M   GV  + +    ++  + ++  +  L
Sbjct: 306 -LKPTLVTFSALICAYAKGGRREEAVRTFSHMVASGVKPDRLAYLVMLDIIARSGDMRKL 364

Query: 488 VRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQ---QANPKLVA 538
           + ++   ++ G +PD+ L   +L+ ++     +++  V+  ++   Q NP+LV+
Sbjct: 365 MALYQTMMNDGYRPDNALYQVMLAALAKGNEYDEIEAVVQDMEVVCQMNPQLVS 418



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 113/489 (23%), Positives = 220/489 (44%), Gaps = 17/489 (3%)

Query: 223  ITYSTII----TCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS 278
            I+ ST+I       K  ++F E ++ +  M + G +P+   Y +++ +  ++ +  +V  
Sbjct: 692  ISKSTVILMLDAFTKAGDIF-EVMKIYNGMKEAGYLPNMHIYRSMISLLCRNKRYRDVEL 750

Query: 279  LYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMG 338
            +      +G++PD    + L  M+  +G++D    V   +   G++PN   YNTL+    
Sbjct: 751  MVVEMERAGFEPDLTILNTLLLMYTGNGNFDKTVEVYHSILEAGLEPNEDTYNTLIVMYS 810

Query: 339  KAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFI 398
            +  +P    +L +EM + GLTP  ++  +L+   GKA+  + A +L+E +R   + ++  
Sbjct: 811  RNLRPEEGFTLLNEMGKKGLTPKLESYKSLLAASGKAKLWEQAEQLFEEIRSKGYRLNRS 870

Query: 399  LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458
            LY+ L+ +  D     +AE+L   MK  D  +P   +   ++  YG+ G+ D A ++   
Sbjct: 871  LYHMLMKIYRDACNHSKAEQLLASMK-EDGIEPTIATMHILMTSYGTAGHPDEAEKVLNS 929

Query: 459  MSELGVAINVMGCTCLIQCLGKARRID-DLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCE 517
            +    + ++ +  + +     K    +  + ++  +  D GVKPD ++  C +   SLCE
Sbjct: 930  LKSSSLEVSTLPYSTVFNAYLKNGDYNLGITKLLEMKAD-GVKPDHQVWTCFIRAASLCE 988

Query: 518  TSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLI 577
             + D   ++  L+     L   + L+ + ++        F   +   E  A   F N L 
Sbjct: 989  RTADAILLLNSLRDCEFDLP--IRLLTERTSSLLTEVSNFLEELDALEDSAALNFVNALE 1046

Query: 578  DICRNRNLNERAHELLYLGTLYGLYPGLHN---KTLDEWSLDVRSLSVGAAQTALEEWMW 634
            D+         A  +  L     +Y   HN       +W  D R LS GAA TAL  W+ 
Sbjct: 1047 DLLWAFECRATASYVFQLAVDKSIYR--HNVFRVVEKDWGADFRKLSAGAALTALTLWLD 1104

Query: 635  TLAKIVLR-EEVLPQLFLAETGTGTHKFSQGLATAFASHVNKLAAPFRQSEGKAGCFVAT 693
             +    L+     P+  +  TG G +     L     +++ ++ +PF   + ++G FVA 
Sbjct: 1105 QMQDASLQGSPESPKSIVLVTGEGEYNMV-SLRKTIRAYLLEMGSPFLPCKTRSGRFVAK 1163

Query: 694  REDLVSWVQ 702
               L  W++
Sbjct: 1164 SYSLKMWLK 1172



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 84/405 (20%), Positives = 150/405 (37%), Gaps = 106/405 (26%)

Query: 183 FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
           F  + + YN  + +         +E++  E+V    + D ITY+T+I    +    D A+
Sbjct: 201 FKPDAVTYNSLLYAFAKEGDADTVERVCEELVRAGFKKDGITYNTMIHMYGKMGRLDLAL 260

Query: 243 EWFERMYKTGLMPDEVTYSAILD-----------------------------------VY 267
             ++ M   G  PD VTY+ ++D                                    Y
Sbjct: 261 GLYDEMRALGCTPDAVTYTVLIDSLGKMDRISDAGKVLEEMADAGLKPTLVTFSALICAY 320

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
           AK G+ EE +  +   VASG KPD +A+ V+  +   SGD   +  + Q M + G +P+ 
Sbjct: 321 AKGGRREEAVRTFSHMVASGVKPDRLAYLVMLDIIARSGDMRKLMALYQTMMNDGYRPDN 380

Query: 328 VVYNTLLEAMGKAGK------------------PGLARS-------------LFDEMVES 356
            +Y  +L A+ K  +                  P L  S             L  +    
Sbjct: 381 ALYQVMLAALAKGNEYDEIEAVVQDMEVVCQMNPQLVSSILIKAECISQGAKLLKKACLQ 440

Query: 357 GLTPDEKTLTALIKIYGKARWAKDALELWERMREN------------------------- 391
           G  PD K+L +++  Y      ++ L L + +RE+                         
Sbjct: 441 GHEPDSKSLLSILDAYETTGKHEEGLSLLQFIREHVPSSCNLISECSIMLLCKNQKIAAA 500

Query: 392 -------------KWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTA 438
                         +  D  LY  L+    +     EA ++F DM+     +P    Y +
Sbjct: 501 MQEYSSMQMLKCGSFGQDCNLYEYLITCLEEAEFFPEASQVFSDMQFIG-IEPSRKIYES 559

Query: 439 MLNIYGSGGNVDNAIELFEEMSELGVAINVMGC-TCLIQCLGKAR 482
           M++ Y   G  + A +L +E  + G+++N++     +I+  GK +
Sbjct: 560 MISAYCKLGFPETAHQLMDEAVQSGISLNILSSRVTMIEAYGKIK 604



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 84/176 (47%), Gaps = 3/176 (1%)

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAK--DALELWE 386
           V+N ++    ++G+    R L D M    L PD  +   LI    K+       A +L  
Sbjct: 65  VFNAMMGVYARSGRFDDVRQLLDAMRGQELEPDLVSFNTLINARAKSGCLAPGSAFDLLL 124

Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
            +R+     D I YNTL++ C+    +++A  +FE+M  S+ C+PD ++Y AM++++G  
Sbjct: 125 EVRQVGLRPDVITYNTLISACSQGSNLDDAVAVFEEMMASE-CRPDLWTYNAMVSVHGRC 183

Query: 447 GNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           G   +A  +F E+ E G   + +    L+    K    D + RV    +  G K D
Sbjct: 184 GKAQDAERMFRELVEKGFKPDAVTYNSLLYAFAKEGDADTVERVCEELVRAGFKKD 239



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/278 (20%), Positives = 110/278 (39%), Gaps = 36/278 (12%)

Query: 225 YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
           Y  +ITC +    F EA + F  M   G+ P    Y +++  Y K G  E    L +  V
Sbjct: 522 YEYLITCLEEAEFFPEASQVFSDMQFIGIEPSRKIYESMISAYCKLGFPETAHQLMDEAV 581

Query: 285 ASG---------------------WKP--------------DPIAFSVLGKMFGESGDYD 309
            SG                     W+               D   ++ L   + ESG Y+
Sbjct: 582 QSGISLNILSSRVTMIEAYGKIKLWQHAENFVKGLKQEPSIDRRIWNALIHAYAESGLYE 641

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
             R V   M   G  P +   N ++ A+   G+      +  E+ + G    + T+  ++
Sbjct: 642 HARAVFDIMIEKGPLPTIDSVNGMMRALIIDGRLDELYVIVQELQDMGFKISKSTVILML 701

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
             + KA    + ++++  M+E  +  +  +Y +++++        + E +  +M+ + + 
Sbjct: 702 DAFTKAGDIFEVMKIYNGMKEAGYLPNMHIYRSMISLLCRNKRYRDVELMVVEMERAGF- 760

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
           +PD      +L +Y   GN D  +E++  + E G+  N
Sbjct: 761 EPDLTILNTLLLMYTGNGNFDKTVEVYHSILEAGLEPN 798



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 69/143 (48%), Gaps = 5/143 (3%)

Query: 363 KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEA---ERL 419
           +   A++ +Y ++    D  +L + MR  +   D + +NTL+N  A  G +      + L
Sbjct: 64  QVFNAMMGVYARSGRFDDVRQLLDAMRGQELEPDLVSFNTLINARAKSGCLAPGSAFDLL 123

Query: 420 FEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479
            E  ++    +PD  +Y  +++    G N+D+A+ +FEEM       ++     ++   G
Sbjct: 124 LEVRQVG--LRPDVITYNTLISACSQGSNLDDAVAVFEEMMASECRPDLWTYNAMVSVHG 181

Query: 480 KARRIDDLVRVFGVSIDRGVKPD 502
           +  +  D  R+F   +++G KPD
Sbjct: 182 RCGKAQDAERMFRELVEKGFKPD 204


>gi|357504477|ref|XP_003622527.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497542|gb|AES78745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 721

 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 106/403 (26%), Positives = 194/403 (48%), Gaps = 22/403 (5%)

Query: 102 RSVLSLQRQKRST---YSYNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTRENAL 158
           R   S+Q QK +        PR R+    A+ + +  N +      ++      ++    
Sbjct: 30  RCFCSVQTQKINNEVEQQQQPRSRNNSKTAKTIANLINYKPWSDELLSSFTTSLSKTTVF 89

Query: 159 LILNSLKFWQKSYFFFNWIKSQNL-FPMETIFYNVTM----KSLRFGRQFQL-IEQLANE 212
             L  +K   K++ FFNWI  +      +T F  + +    K+L   R F   IE+ +N 
Sbjct: 90  QTLRHIKVPTKAFLFFNWIHEKGFSHNPQTYFIMLEILGREKNLNIARNFLYSIEKRSN- 148

Query: 213 MVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK 272
               E++L++  ++++I       LF E+++ FE M   G+ P  VT++++L V  K G+
Sbjct: 149 ---GEVKLEDRFFNSLIRSYGEAGLFKESVKLFENMKLIGVSPGVVTFNSVLLVLLKRGR 205

Query: 273 VEEVLSLYERGVAS-GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYN 331
                 +Y+  + + G KPD   +++L + F ++   D   Y  +EM S    P++V YN
Sbjct: 206 TNMAKEVYDEMLKTYGVKPDTYTYNILIRGFCKNSMVDEGFYFFKEMTSFDCDPDVVTYN 265

Query: 332 TLLEAMGKAGKPGLARSLFDEMVES--GLTPDEKTLTALIKIYGKARWAKDALELWERMR 389
           TL++ + +AGK  +A +L + M +    L+PD  T T LI+ Y + +   +AL++ E M 
Sbjct: 266 TLVDGLCRAGKIKVAHNLVNGMSKKCKDLSPDVVTYTTLIRGYCRKQEVDEALDILEEMN 325

Query: 390 ENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNV 449
                 + + YNTL+    +    ++ + + E MK      PD  ++  ++N +   GN+
Sbjct: 326 GRGLKPNIVTYNTLIKGLCEAQKWDKMKEILEQMKGDGGSIPDACTFNTLINSHCCAGNL 385

Query: 450 DNAIELFEEMSELGVAINVMGCTCLIQCL------GKARRIDD 486
           D A ++FE M +L V+ +    + LI+ L      GKA  + D
Sbjct: 386 DEAFKVFENMKKLEVSADSASYSVLIRTLCQKGDYGKAEMLFD 428



 Score = 48.9 bits (115), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 54/284 (19%), Positives = 116/284 (40%), Gaps = 42/284 (14%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIEL-DNITYSTIITCAKRCNLFDEAIEWFE 246
           + YN  +K L   +++  ++++  +M  +   + D  T++T+I         DEA + FE
Sbjct: 334 VTYNTLIKGLCEAQKWDKMKEILEQMKGDGGSIPDACTFNTLINSHCCAGNLDEAFKVFE 393

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSG---KVEEVLS-LYERGVA-SGWKPDPIA--FSVLG 299
            M K  +  D  +YS ++    + G   K E +   L+E+ +  S + P P+A  +  + 
Sbjct: 394 NMKKLEVSADSASYSVLIRTLCQKGDYGKAEMLFDELFEKEILLSSYGPKPLAASYKCMF 453

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQ----------------------------------P 325
           +   E+G       VL+++   G Q                                  P
Sbjct: 454 QYLCENGKTKKAERVLRQLMKRGTQDPLSYQIVILGHCKEGSYENGYGLLVWMLRRDFLP 513

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
           ++ +Y+ L++   +  KP LA+   ++M++S   P   T  +++    +     ++  + 
Sbjct: 514 DIDIYDYLIDGFLRKDKPLLAKETLEKMLKSSYKPQTSTWHSILNRLLEQGCVHESAGVI 573

Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
             M E     +       L +  D GL ++A ++ E +  + +C
Sbjct: 574 VMMLERNIRQNINFSTKCLQLLFDRGLQDKAFKITELIYKNGFC 617


>gi|125548610|gb|EAY94432.1| hypothetical protein OsI_16202 [Oryza sativa Indica Group]
 gi|125590647|gb|EAZ30997.1| hypothetical protein OsJ_15079 [Oryza sativa Japonica Group]
          Length = 485

 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 161/333 (48%), Gaps = 5/333 (1%)

Query: 172 FFFNWIKSQNLFPMETIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIIT 230
           F+   + +    P E   +NV M+ L R G +    + + +EM S  +    ++++T+I+
Sbjct: 103 FYLQLLDAG--LPPEAKLFNVLMRDLVRLG-ELASAQNVFDEMQSRGVRRTVVSFNTMIS 159

Query: 231 CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
              R    D A     RM + G+ PD  TY A++    + G++E+   ++E+    G KP
Sbjct: 160 GMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKP 219

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
           + + F++L     + GD + +  + +EM+  GV+P+ V YN ++  + +A     A  + 
Sbjct: 220 NAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIV 279

Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
            EM  +GL PD  T T LI  Y K      A+E+ + M      +D + Y  L++  +  
Sbjct: 280 VEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKA 339

Query: 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG 470
           G   +AER+  +M +    +PDN +YT +++ +   G+V   + L +EM   G    V+ 
Sbjct: 340 GRSADAERVLGEM-MEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVT 398

Query: 471 CTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
              ++    K  ++ +   +    I+ GV PDD
Sbjct: 399 YNVIMNGFCKLGQMKNADMLLNAMINIGVSPDD 431



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 68/264 (25%), Positives = 132/264 (50%), Gaps = 1/264 (0%)

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           EA  ++ ++   GL P+   ++ ++    + G++    ++++   + G +   ++F+ + 
Sbjct: 99  EACAFYLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMI 158

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
                +GD DG   + + M   GV P++  Y  L++ + + G+   AR +F++M   G+ 
Sbjct: 159 SGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMK 218

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
           P+    T LI  + K   A+  LEL   MRE     D + YN ++N       ++ A  +
Sbjct: 219 PNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGI 278

Query: 420 FEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479
             +M+ S   +PD  +YT +++ Y     +D A+E+ + M   GV ++ +  T LI  L 
Sbjct: 279 VVEMR-SAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLS 337

Query: 480 KARRIDDLVRVFGVSIDRGVKPDD 503
           KA R  D  RV G  ++ G++PD+
Sbjct: 338 KAGRSADAERVLGEMMEAGLEPDN 361



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 97/199 (48%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + YN  +  L   R  +    +  EM S  +  D +TY+T+I    +    D A+E  
Sbjct: 255 DAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIK 314

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           + M   G+  DEVTY+A++   +K+G+  +   +    + +G +PD   ++++   F   
Sbjct: 315 QNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRK 374

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           GD      +L+EM++ G +P +V YN ++    K G+   A  L + M+  G++PD+ T 
Sbjct: 375 GDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDDITY 434

Query: 366 TALIKIYGKARWAKDALEL 384
             L+  + K     D  EL
Sbjct: 435 NILLDGHCKHGKVTDIEEL 453



 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 65/269 (24%), Positives = 110/269 (40%), Gaps = 5/269 (1%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F  +  + + P   +F  +     + G    ++E L  EM    +  D +TY+ I+   
Sbjct: 208 VFEKMCGRGMKPNAVVFTILIDAHCKKGDAETMLE-LHREMRERGVRPDAVTYNAIVNGL 266

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            R      A      M   GL PD VTY+ ++D Y K  +++  + + +  VA G   D 
Sbjct: 267 CRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDE 326

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           + ++ L     ++G       VL EM   G++P+   Y  +++A  + G       L  E
Sbjct: 327 VTYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKE 386

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M   G  P   T   ++  + K    K+A  L   M       D I YN LL+     G 
Sbjct: 387 MQNKGRKPGVVTYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDDITYNILLDGHCKHGK 446

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
           V +     E++K +    PD   YT+++ 
Sbjct: 447 VTD----IEELKSAKGTVPDLGVYTSIVG 471


>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Brachypodium distachyon]
          Length = 718

 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 87/315 (27%), Positives = 164/315 (52%), Gaps = 2/315 (0%)

Query: 190 YNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERM 248
           YN+ +++L   G++ + +  + ++M       + +TY+T++    R    D A      M
Sbjct: 157 YNILVRALCARGQREEALGVVGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVM 216

Query: 249 YKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY 308
            + G+ P  VT++ +++   K+G++E+   +++     G  PD ++++ L   + ++G  
Sbjct: 217 REGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCL 276

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
                V  EM   GV P++V + +L+ AM +AG    A +L  +M E GL  +E T TAL
Sbjct: 277 HEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTAL 336

Query: 369 IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428
           I  + +  +  DAL   + MRE +     + YN L+N    +G ++EA  L  +M+    
Sbjct: 337 IDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGM 396

Query: 429 CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLV 488
            KPD  +Y+ +L+ Y   G+ D+A EL  +M + GV  + +  + LI+ L + RR+ D  
Sbjct: 397 -KPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDAC 455

Query: 489 RVFGVSIDRGVKPDD 503
            +F   +  G++PD+
Sbjct: 456 ELFEKMLQLGLQPDE 470



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 84/309 (27%), Positives = 152/309 (49%), Gaps = 11/309 (3%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           + +N  +  L    + +   ++ +EM    +  D ++Y+T+++   +     EA+  F  
Sbjct: 226 VTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAE 285

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M + G++PD VT+++++    ++G +E  ++L  +    G + +   F+ L   F  +G 
Sbjct: 286 MAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGF 345

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
            D     ++EM+   +QP++V YN L+    K G+   AR L  EM   G+ PD  T + 
Sbjct: 346 LDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYST 405

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEE-----AERLFED 422
           ++  Y K      A EL  +M +     D I Y++L+      GL EE     A  LFE 
Sbjct: 406 ILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIR-----GLCEERRLGDACELFEK 460

Query: 423 MKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKAR 482
           M L    +PD ++YT +++ +   GNV  A+ L +EM + GV  +V+  + LI  L K+ 
Sbjct: 461 M-LQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGLSKSA 519

Query: 483 RIDDLVRVF 491
           R  +  R+ 
Sbjct: 520 RTKEAQRLL 528



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 126/282 (44%), Gaps = 16/282 (5%)

Query: 212 EMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG 271
           EM    I+   + Y+ +I    +    DEA E    M   G+ PD VTYS IL  Y K G
Sbjct: 355 EMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIG 414

Query: 272 KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYN 331
             +    L  + +  G  PD I +S L +   E         + ++M  LG+QP+   Y 
Sbjct: 415 DTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYT 474

Query: 332 TLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN 391
           TL++   K G    A SL DEM++ G+ PD  T + LI    K+   K+A  L  ++   
Sbjct: 475 TLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGLSKSARTKEAQRLLFKLYYE 534

Query: 392 KWPMDFILYNTLLNMCADI---------------GLVEEAERLFEDMKLSDYCKPDNYSY 436
               D I Y  L++ C                  GL+ +A+++++ M L  + K D   Y
Sbjct: 535 DPVPDNIKYEALMHCCRTAEFKSVVALLKGFSMKGLMNQADKVYQSM-LDRHWKLDGSVY 593

Query: 437 TAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL 478
           + +++ +  GGN+  A+   +++   G + N      L++ L
Sbjct: 594 SVLIHGHCRGGNIMKALSFHKQLLRCGFSPNSTSTISLVRGL 635



 Score =  102 bits (254), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 128/268 (47%), Gaps = 2/268 (0%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           F  +  + + P    F ++     R G   +    L  +M    + ++  T++ +I    
Sbjct: 283 FAEMAQKGVVPDVVTFTSLIHAMCRAG-NLERAVALVGQMRERGLRMNEFTFTALIDGFC 341

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
           R    D+A+   + M +  + P  V Y+ +++ Y K G+++E   L     A G KPD +
Sbjct: 342 RNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVV 401

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
            +S +   + + GD D    + ++M   GV P+ + Y++L+  + +  + G A  LF++M
Sbjct: 402 TYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKM 461

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
           ++ GL PDE T T LI  + K    + AL L + M +     D + Y+ L++  +     
Sbjct: 462 LQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGLSKSART 521

Query: 414 EEAERLFEDMKLSDYCKPDNYSYTAMLN 441
           +EA+RL   +   D   PDN  Y A+++
Sbjct: 522 KEAQRLLFKLYYEDPV-PDNIKYEALMH 548



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 97/217 (44%), Gaps = 36/217 (16%)

Query: 322 GVQPNLVVYNTLLEAMGKAGKP------------GLARSLF------------------- 350
           G  P+L+ YN +L A+  A  P            G+A +++                   
Sbjct: 115 GYAPSLLAYNAVLLALSDASLPSARRLLASMLRDGVAPNVYTYNILVRALCARGQREEAL 174

Query: 351 ----DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
               D+M  +G  P+  T   L+  + +A     A  L   MRE       + +NT++N 
Sbjct: 175 GVVGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVNG 234

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               G +E+A ++F++M   +   PD  SY  +++ Y   G +  A+ +F EM++ GV  
Sbjct: 235 LCKAGRMEDARKMFDEMA-REGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVP 293

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
           +V+  T LI  + +A  ++  V + G   +RG++ ++
Sbjct: 294 DVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNE 330



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 45/201 (22%), Positives = 89/201 (44%), Gaps = 17/201 (8%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + I Y+  ++ L   R+     +L  +M+   ++ D  TY+T+I    +     +A+   
Sbjct: 434 DAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLH 493

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           + M K G++PD VTYS ++D  +KS + +E   L  +       PD I +  L      +
Sbjct: 494 DEMIKKGVLPDVVTYSVLIDGLSKSARTKEAQRLLFKLYYEDPVPDNIKYEALMHCC-RT 552

Query: 306 GDYDGIRYVLQ--EMKSLGVQPNLV--------------VYNTLLEAMGKAGKPGLARSL 349
            ++  +  +L+   MK L  Q + V              VY+ L+    + G    A S 
Sbjct: 553 AEFKSVVALLKGFSMKGLMNQADKVYQSMLDRHWKLDGSVYSVLIHGHCRGGNIMKALSF 612

Query: 350 FDEMVESGLTPDEKTLTALIK 370
             +++  G +P+  +  +L++
Sbjct: 613 HKQLLRCGFSPNSTSTISLVR 633


>gi|32489924|emb|CAE05516.1| OSJNBa0038P21.9 [Oryza sativa Japonica Group]
          Length = 825

 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 145/287 (50%), Gaps = 1/287 (0%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           TY+ +I C +R    D  +  F R+ +TGL PD  +Y+A++D ++K G+V++   L+ + 
Sbjct: 191 TYNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKAHDLFYKM 250

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
              G  P+ + +S L     ++ + D    VL++M   GV+PN + YN L+     +G  
Sbjct: 251 EEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYSTSGMW 310

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
             +  +F EM  S L PD     + +    K    K+A ++++ M       D I Y  L
Sbjct: 311 KESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVISYGAL 370

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           L+  A  G +   + LF  M + +   PD + +  ++N Y   G +D ++ +FE+M++ G
Sbjct: 371 LHGYATAGCIAGMDNLFNVM-VCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQG 429

Query: 464 VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
           V  +++  + +I    +  R+DD +  F   ID GV PD  +  CL+
Sbjct: 430 VNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLI 476



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 99/380 (26%), Positives = 187/380 (49%), Gaps = 20/380 (5%)

Query: 187 TIF-YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           TI+ YN+ +   R  R+  L   +   ++   +  D  +Y+ +I    +    D+A + F
Sbjct: 188 TIYTYNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKAHDLF 247

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
            +M + G+MP+ VTYS++++   K+ ++++   +  + V +G +P+ + ++ L   +  S
Sbjct: 248 YKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYSTS 307

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G +     V +EM S  + P++   N+ + A+ K G+   AR +FD MV  G  PD  + 
Sbjct: 308 GMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVISY 367

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
            AL+  Y  A        L+  M       D  ++NTL+N  A +G+++++  +FEDM  
Sbjct: 368 GALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMT- 426

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
                PD  +++ +++ +   G +D+A+E F  M + GV  +    +CLIQ  G+  R  
Sbjct: 427 KQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQ--GQCNR-R 483

Query: 486 DLVR---VFGVSIDRGVKPDDRLCGCLLSVV--SLCE-----TSEDVGKVITCLQQANPK 535
           DLV+   +    + +G+ P    C    + +  +LC+       +DV  +I    Q  P 
Sbjct: 484 DLVKAKELISDMLSKGIPPP---CIKFFTSIINNLCKEGRVAEGKDVVDLIIHTGQ-RPN 539

Query: 536 LVAFLNLIEDNSTGFENIKE 555
           L+ F +L+ D      N+KE
Sbjct: 540 LITFNSLV-DGYCLVGNMKE 558



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 81/359 (22%), Positives = 162/359 (45%), Gaps = 38/359 (10%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           K++  F  ++ Q + P   + Y+  +  L   ++    E++  +MV   +  +N+TY+ +
Sbjct: 242 KAHDLFYKMEEQGIMP-NVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCL 300

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
           I       ++ E++  F+ M  + L+PD    ++ +    K G+++E   +++  V  G 
Sbjct: 301 IHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGP 360

Query: 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348
           KPD I++  L   +  +G   G+  +   M   GV P+  V+NTL+ A  + G    +  
Sbjct: 361 KPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLL 420

Query: 349 LFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL-NMC 407
           +F++M + G+ PD  T + +I  + +     DA+E +  M +   P D  +Y+ L+   C
Sbjct: 421 MFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQC 480

Query: 408 ADIGLVEEAERLFEDM---------------KLSDYCK--------------------PD 432
               LV +A+ L  DM                +++ CK                    P+
Sbjct: 481 NRRDLV-KAKELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAEGKDVVDLIIHTGQRPN 539

Query: 433 NYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
             ++ ++++ Y   GN+  A+ L + M  +GV  ++     L+    K  RIDD + +F
Sbjct: 540 LITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDALTLF 598



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 141/297 (47%), Gaps = 10/297 (3%)

Query: 206 IEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
           ++ L N MV   +  D   ++T+I    R  + D+++  FE M K G+ PD +T+S ++ 
Sbjct: 383 MDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVIS 442

Query: 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325
            + + G++++ +  +   + +G  PD   +S L +      D    + ++ +M S G+ P
Sbjct: 443 AFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPP 502

Query: 326 NLV-VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384
             +  + +++  + K G+    + + D ++ +G  P+  T  +L+  Y      K+A+ L
Sbjct: 503 PCIKFFTSIINNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGL 562

Query: 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYG 444
            + M       D   YNTL++     G +++A  LF DM L       + SY  +L+   
Sbjct: 563 LDSMESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDM-LHKRVTLTSVSYNIILHGLF 621

Query: 445 SGGNVDNAIELFEEMSELGVAIN------VMGCTCLIQCLGKARRIDDLVRVFGVSI 495
                  A E+F EM E G+A++      V+G  C   C  +A  +  L ++F +++
Sbjct: 622 QARRTIVAKEMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANML--LEKLFSMNV 676



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 78/337 (23%), Positives = 137/337 (40%), Gaps = 44/337 (13%)

Query: 164 LKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNI 223
           L    KS   F  +  Q + P    F  V     R GR    +E+  N M+   +  D  
Sbjct: 412 LGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKF-NHMIDTGVPPDTA 470

Query: 224 TYSTIITCAKRCNLFD--EAIEWFERMYKTGLMPDEVTY-SAILDVYAKSGKVEEVLSLY 280
            YS +I    +CN  D  +A E    M   G+ P  + + ++I++   K G+V E   + 
Sbjct: 471 VYSCLIQ--GQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAEGKDVV 528

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
           +  + +G +P+ I F+ L   +   G+      +L  M+S+GV+P++  YNTL++   K 
Sbjct: 529 DLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKH 588

Query: 341 GK---------------------------PGL--------ARSLFDEMVESGLTPDEKTL 365
           G+                            GL        A+ +F EM+ESG+     T 
Sbjct: 589 GRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAKEMFHEMIESGMAVSIHTY 648

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
             ++    +     +A  L E++       D + +N ++     +G  +EA+ LF    +
Sbjct: 649 ATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFKVGRRQEAKELFA--AI 706

Query: 426 SDY-CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461
           S Y   P   +Y  M+       + ++A  LF  M +
Sbjct: 707 STYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEK 743



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/210 (19%), Positives = 97/210 (46%), Gaps = 4/210 (1%)

Query: 185 METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEW 244
           + ++ YN+ +  L   R+  + +++ +EM+ + + +   TY+T++    R N  DEA   
Sbjct: 608 LTSVSYNIILHGLFQARRTIVAKEMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANML 667

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
            E+++   +  D +T++ ++    K G+ +E   L+      G  P  + + V+     +
Sbjct: 668 LEKLFSMNVKFDILTFNIVIRAMFKVGRRQEAKELFAAISTYGLVPTILTYRVMITNLIK 727

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
              ++    +   M+     P+  + N ++  +   G+   A +   ++ + G+ P+  T
Sbjct: 728 EESFEDADNLFSSMEKSSCTPDSRILNEIIRMLLNKGEVAKAGNYLSKIDKKGILPEATT 787

Query: 365 LTALIKIY---GKAR-WAKDALELWERMRE 390
            + LI ++   GK R + K   E +  +RE
Sbjct: 788 TSLLIYLFSVNGKYREYIKLLPEKYRFLRE 817



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/250 (20%), Positives = 106/250 (42%), Gaps = 1/250 (0%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L + M S  +E D  TY+T++    +    D+A+  F  M    +    V+Y+ IL    
Sbjct: 562 LLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLF 621

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           ++ +      ++   + SG       ++ +      +   D    +L+++ S+ V+ +++
Sbjct: 622 QARRTIVAKEMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDIL 681

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            +N ++ AM K G+   A+ LF  +   GL P   T   +I    K    +DA  L+  M
Sbjct: 682 TFNIVIRAMFKVGRRQEAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSM 741

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
            ++    D  + N ++ M  + G V +A      +       P+  + + ++ ++   G 
Sbjct: 742 EKSSCTPDSRILNEIIRMLLNKGEVAKAGNYLSKIDKKGIL-PEATTTSLLIYLFSVNGK 800

Query: 449 VDNAIELFEE 458
               I+L  E
Sbjct: 801 YREYIKLLPE 810



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 80/197 (40%), Gaps = 13/197 (6%)

Query: 331 NTLLEAMGKAGK-------PGLARSLFDEMVESGL---TPDEKTLTALIKIYGKARWAKD 380
           N LL A+ +A         P LA  LF  M         P   T   LI  Y +AR    
Sbjct: 148 NELLSALARAPPSAACRDVPALAVELFKRMDRCACPEAAPTIYTYNILINCYRRARRPDL 207

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
            L ++ R+       D   YN L++  +  G V++A  LF  M+      P+  +Y++++
Sbjct: 208 GLPVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKAHDLFYKME-EQGIMPNVVTYSSLI 266

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
           N       +D A  +  +M   GV  N M   CLI     +    + VRVF       + 
Sbjct: 267 NGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLV 326

Query: 501 PDDRLCGCLLSVVSLCE 517
           PD   C   ++  +LC+
Sbjct: 327 PDVGNCNSFMT--ALCK 341


>gi|302793330|ref|XP_002978430.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
 gi|300153779|gb|EFJ20416.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
          Length = 475

 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 93/316 (29%), Positives = 158/316 (50%), Gaps = 5/316 (1%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNE-IELDNITYSTIITCAKRCNLFDEAIEWFERM 248
           YN  + SL   ++      + + MVS   +  D ++YS +I    + +    A + +++M
Sbjct: 124 YNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKLYKQM 183

Query: 249 YKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY 308
                +P+  TY+A L+   + G++ +   +YE  +++G  PD I +S L   F  +  +
Sbjct: 184 IDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLARKH 243

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
           D    + + M S G +PN V YN LL  + K  KP  A  LF +MVE G  PD+ T T L
Sbjct: 244 DQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTTL 303

Query: 369 IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428
           +  +      + A+E+++ M       D + YN LL      G   EA +LF+ M +S  
Sbjct: 304 LYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVM-VSRE 362

Query: 429 CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE-LGVAINVMGCTCLIQCLGKARRIDDL 487
           CKPD  S+  M++       +D+A+E+FE M +  G + +++    LI  L   +R+ + 
Sbjct: 363 CKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEA 422

Query: 488 VRVFGVSIDR-GVKPD 502
           ++VF   IDR  + PD
Sbjct: 423 MKVFK-EIDRLKLSPD 437



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 86/263 (32%), Positives = 131/263 (49%), Gaps = 11/263 (4%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN  +  L    +    + +  EM+S     D ITYST+I         D+A E FE M 
Sbjct: 195 YNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLARKHDQAHELFEAMI 254

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
             G  P+ VTY+ +L    K  K +E   L+ + V  G  PD + ++ L   F   G  +
Sbjct: 255 SRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTTLLYGFCNVGKIE 314

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               V  EM S G  P++V YN LL+   +AGKPG AR LF  MV     PD  +   +I
Sbjct: 315 QAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSRECKPDTVSHNIMI 374

Query: 370 KIYGKARWAKDALELWERMRENK-WPMDFILYNTLL-NMCADIGLVEEAERLFED---MK 424
               KA+   DA+E++ERM ++     D + YN+L+  +C +  L  EA ++F++   +K
Sbjct: 375 DGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRL-SEAMKVFKEIDRLK 433

Query: 425 LSDYCKPDNYSYTAMLN-IYGSG 446
           LS    PD +++  +L  +Y +G
Sbjct: 434 LS----PDPHAFNVLLEAMYAAG 452



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 85/329 (25%), Positives = 161/329 (48%), Gaps = 7/329 (2%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKT--GLMPDEVTYSAILDVYAKSGKVEEVLS 278
           D  T+S +I    + +   EA E+ + M +T         +Y+++L+   K+ KV +  +
Sbjct: 83  DMATHSMLINELCKADKIQEAQEFLQGMNRTISTRASSCFSYNSLLNSLCKAKKVHQAFA 142

Query: 279 LYERGVAS-GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
           ++   V+     PD +++S+L   F +  +      + ++M  L   PN+  YN  L  +
Sbjct: 143 IFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGL 202

Query: 338 GKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDF 397
            + G+   A+ +++EM+ +G +PD  T + LI  +  AR    A EL+E M       + 
Sbjct: 203 MRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLARKHDQAHELFEAMISRGCRPNA 262

Query: 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE 457
           + YN LL+        +EA  LF  M +   C PD  +YT +L  + + G ++ A+E+F+
Sbjct: 263 VTYNCLLHGLCKESKPDEAHELFRKM-VERGCDPDKVTYTTLLYGFCNVGKIEQAVEVFD 321

Query: 458 EMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCE 517
           EM   G   +V+   CL++   +A +  +  ++F V + R  KPD      ++  +S  +
Sbjct: 322 EMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSRECKPDTVSHNIMIDGLSKAK 381

Query: 518 TSEDVGKVITCLQQ---ANPKLVAFLNLI 543
             +D  +V   ++Q    +P LV + +LI
Sbjct: 382 RLDDAVEVFERMEQDHGCSPDLVTYNSLI 410



 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 123/288 (42%), Gaps = 42/288 (14%)

Query: 256 DEVTYSAILDVYAKSGKVEE--------------------------------------VL 277
           + V ++A L    KSGK+E+                                       L
Sbjct: 10  NNVAWTAFLGGLCKSGKIEQAFEACRTMQESLSSSQPPSSGTCHSVIQELCKAGRVDSAL 69

Query: 278 SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEM-KSLGVQP-NLVVYNTLLE 335
           SL E  +  G+ PD    S+L     ++      +  LQ M +++  +  +   YN+LL 
Sbjct: 70  SLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMNRTISTRASSCFSYNSLLN 129

Query: 336 AMGKAGKPGLARSLFDEMV-ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWP 394
           ++ KA K   A ++F  MV E  + PD  + + LI  + K      A +L+++M +    
Sbjct: 130 SLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCV 189

Query: 395 MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIE 454
            +   YN  LN     G + +A+ ++E+M +S  C PD  +Y+ +++ +      D A E
Sbjct: 190 PNVTTYNAFLNGLMRKGRIADAQGVYEEM-ISAGCSPDVITYSTLIHGFSLARKHDQAHE 248

Query: 455 LFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           LFE M   G   N +   CL+  L K  + D+   +F   ++RG  PD
Sbjct: 249 LFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPD 296


>gi|413926076|gb|AFW66008.1| hypothetical protein ZEAMMB73_411794 [Zea mays]
          Length = 633

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 99/348 (28%), Positives = 171/348 (49%), Gaps = 10/348 (2%)

Query: 159 LILNSLK---FWQKSYFFFNWIKSQNLFPMETIFYNVTMK-SLRFGRQFQLIEQLANEMV 214
           ++LN+L       ++Y  F  +K QN    +   Y + ++ S + G+  + +  L  EMV
Sbjct: 223 MLLNALAKAGMVDQAYQVFEDMK-QNYCDPDAYTYTILIRMSGKAGKTTKFV-SLLEEMV 280

Query: 215 SNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVE 274
           S    L+ I Y+T+I    +  + DEAI    +M ++   P++ TYS +LDV +  G++ 
Sbjct: 281 SEGCVLNLIAYNTVIEALGKNKMVDEAIFMLSKMIESDCRPNQFTYSIMLDVLSTGGQLH 340

Query: 275 EVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLL 334
            +  + +  + SG    P+ +S L K   +SG       V   M +   + +   + ++L
Sbjct: 341 RLNEILD--ICSGCLNRPV-YSYLIKALCKSGHASEAHSVFCRMWNSHEKGDRYAFVSML 397

Query: 335 EAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWP 394
           EA+  A K   A  L   M E G+T D      +    GK +       L++ MR N   
Sbjct: 398 EALCNAEKTTEAIDLLHMMPEKGITTDVGMYNMIFSALGKLKQVSFMSSLYDTMRANGVV 457

Query: 395 MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIE 454
            D   YN +++    +GLV++A  LFE+M+    CKPD  +Y +M+N  G  G++D A  
Sbjct: 458 PDVFTYNIMISSFGRVGLVDKASELFEEME-DGSCKPDVVTYNSMINCLGKNGDLDEAHM 516

Query: 455 LFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           LF++M E G   +V   + LI+C GK+ ++D    +F   + +G  P+
Sbjct: 517 LFKDMQEKGYDPDVFTYSILIECFGKSNKVDMACSLFDEMVAQGCIPN 564



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 115/229 (50%), Gaps = 8/229 (3%)

Query: 287 GWKPDPIAFS-VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGL 345
           G++ D  +++ +L  +F    D      ++ EM+  GV  N+   N L+    + G+   
Sbjct: 113 GFRHDAFSYNRILVLLFSNRADPAEAMRLIAEMERDGVPGNISTVNLLVGMGVEVGR--- 169

Query: 346 ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405
                D   + GL  +  T   L++ + ++R      E++E+MR   + +D   YN LLN
Sbjct: 170 ---CLDLASKWGLRLNGYTYKCLVQAHLRSREVWKGFEVYEKMRRKGYKLDIFAYNMLLN 226

Query: 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
             A  G+V++A ++FEDMK  +YC PD Y+YT ++ + G  G     + L EEM   G  
Sbjct: 227 ALAKAGMVDQAYQVFEDMK-QNYCDPDAYTYTILIRMSGKAGKTTKFVSLLEEMVSEGCV 285

Query: 466 INVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVS 514
           +N++    +I+ LGK + +D+ + +    I+   +P+      +L V+S
Sbjct: 286 LNLIAYNTVIEALGKNKMVDEAIFMLSKMIESDCRPNQFTYSIMLDVLS 334



 Score =  105 bits (262), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 99/188 (52%)

Query: 189 FYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERM 248
            YN+   +L   +Q   +  L + M +N +  D  TY+ +I+   R  L D+A E FE M
Sbjct: 427 MYNMIFSALGKLKQVSFMSSLYDTMRANGVVPDVFTYNIMISSFGRVGLVDKASELFEEM 486

Query: 249 YKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY 308
                 PD VTY+++++   K+G ++E   L++     G+ PD   +S+L + FG+S   
Sbjct: 487 EDGSCKPDVVTYNSMINCLGKNGDLDEAHMLFKDMQEKGYDPDVFTYSILIECFGKSNKV 546

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
           D    +  EM + G  PN+V YN LL+ + + GK   A   ++ + + GLTPD  T + L
Sbjct: 547 DMACSLFDEMVAQGCIPNIVTYNILLDCLERRGKTTEAHKFYETLKQQGLTPDSITYSIL 606

Query: 369 IKIYGKAR 376
            ++  +++
Sbjct: 607 ERLESRSQ 614



 Score = 99.4 bits (246), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 114/479 (23%), Positives = 209/479 (43%), Gaps = 58/479 (12%)

Query: 50  VAAESPNPETKTLSLSEQLKPLSSTTLSPTKNDRTPLLSKPKSTWVNPTKPRRSVL-SLQ 108
           +AA +P+P   ++++          T+SPT    TPL ++  S       PRR ++ ++ 
Sbjct: 13  IAAATPSPSGPSITV----------TVSPTPAP-TPLDTRGYSL------PRRHLICAVA 55

Query: 109 RQKRSTYSYNPRVRDLKLFARKLNDCDNTEEA--FLRAITEIPHQPTRENALLIL----N 162
           R  RS  S+ P + DL  + R L     T EA   ++A+      P    AL        
Sbjct: 56  RILRSPVSHTPLL-DLDDYLRSLRLTLTTAEASEVMKALA-----PDTSLALSFFRFAAT 109

Query: 163 SLKFWQKSYFFFNWIK----SQNLFPMETIFY-----------NVTMKSLRFGRQFQLIE 207
           SL  ++   F +N I     S    P E +             N++  +L  G   ++  
Sbjct: 110 SLPGFRHDAFSYNRILVLLFSNRADPAEAMRLIAEMERDGVPGNISTVNLLVGMGVEVGR 169

Query: 208 QLANEMVSN-EIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
            L  ++ S   + L+  TY  ++    R     +  E +E+M + G   D   Y+ +L+ 
Sbjct: 170 CL--DLASKWGLRLNGYTYKCLVQAHLRSREVWKGFEVYEKMRRKGYKLDIFAYNMLLNA 227

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
            AK+G V++   ++E    +   PD   +++L +M G++G       +L+EM S G   N
Sbjct: 228 LAKAGMVDQAYQVFEDMKQNYCDPDAYTYTILIRMSGKAGKTTKFVSLLEEMVSEGCVLN 287

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIY---GKARWAKDALE 383
           L+ YNT++EA+GK      A  +  +M+ES   P++ T + ++ +    G+     + L+
Sbjct: 288 LIAYNTVIEALGKNKMVDEAIFMLSKMIESDCRPNQFTYSIMLDVLSTGGQLHRLNEILD 347

Query: 384 LWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIY 443
           +          ++  +Y+ L+      G   EA  +F  M  + + K D Y++ +ML   
Sbjct: 348 ICSGC------LNRPVYSYLIKALCKSGHASEAHSVFCRM-WNSHEKGDRYAFVSMLEAL 400

Query: 444 GSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            +      AI+L   M E G+  +V     +   LGK +++  +  ++      GV PD
Sbjct: 401 CNAEKTTEAIDLLHMMPEKGITTDVGMYNMIFSALGKLKQVSFMSSLYDTMRANGVVPD 459



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 97/200 (48%), Gaps = 1/200 (0%)

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           EAI+    M + G+  D   Y+ I     K  +V  + SLY+   A+G  PD   ++++ 
Sbjct: 408 EAIDLLHMMPEKGITTDVGMYNMIFSALGKLKQVSFMSSLYDTMRANGVVPDVFTYNIMI 467

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
             FG  G  D    + +EM+    +P++V YN+++  +GK G    A  LF +M E G  
Sbjct: 468 SSFGRVGLVDKASELFEEMEDGSCKPDVVTYNSMINCLGKNGDLDEAHMLFKDMQEKGYD 527

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
           PD  T + LI+ +GK+     A  L++ M       + + YN LL+     G   EA + 
Sbjct: 528 PDVFTYSILIECFGKSNKVDMACSLFDEMVAQGCIPNIVTYNILLDCLERRGKTTEAHKF 587

Query: 420 FEDMKLSDYCKPDNYSYTAM 439
           +E +K      PD+ +Y+ +
Sbjct: 588 YETLKQQGL-TPDSITYSIL 606



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 92/195 (47%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L + M    I  D   Y+ I +   +          ++ M   G++PD  TY+ ++  + 
Sbjct: 412 LLHMMPEKGITTDVGMYNMIFSALGKLKQVSFMSSLYDTMRANGVVPDVFTYNIMISSFG 471

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           + G V++   L+E       KPD + ++ +    G++GD D    + ++M+  G  P++ 
Sbjct: 472 RVGLVDKASELFEEMEDGSCKPDVVTYNSMINCLGKNGDLDEAHMLFKDMQEKGYDPDVF 531

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            Y+ L+E  GK+ K  +A SLFDEMV  G  P+  T   L+    +     +A + +E +
Sbjct: 532 TYSILIECFGKSNKVDMACSLFDEMVAQGCIPNIVTYNILLDCLERRGKTTEAHKFYETL 591

Query: 389 RENKWPMDFILYNTL 403
           ++     D I Y+ L
Sbjct: 592 KQQGLTPDSITYSIL 606



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 51/116 (43%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + YN  +  L           L  +M     + D  TYS +I C  + N  D A   F
Sbjct: 494 DVVTYNSMINCLGKNGDLDEAHMLFKDMQEKGYDPDVFTYSILIECFGKSNKVDMACSLF 553

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKM 301
           + M   G +P+ VTY+ +LD   + GK  E    YE     G  PD I +S+L ++
Sbjct: 554 DEMVAQGCIPNIVTYNILLDCLERRGKTTEAHKFYETLKQQGLTPDSITYSILERL 609


>gi|302794911|ref|XP_002979219.1| hypothetical protein SELMODRAFT_110655 [Selaginella moellendorffii]
 gi|300152987|gb|EFJ19627.1| hypothetical protein SELMODRAFT_110655 [Selaginella moellendorffii]
          Length = 1143

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 80/333 (24%), Positives = 167/333 (50%), Gaps = 1/333 (0%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           W+++  FF W+K Q  +    I Y++ +K     +Q  L E    EM+  +++ D + +S
Sbjct: 256 WKEAQEFFAWMKLQLSYIPSVIVYSMLLKVYGRDKQIGLAEAAFQEMLDQKLDPDEVAFS 315

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T+I       +FDE +  +E M   G++P  VTY+ +L    K+ ++ +   L+E  V  
Sbjct: 316 TMILNYANAEMFDEMLTMYEAMMSRGIVPSSVTYTTMLIHLNKAERLADAALLWEDLVEE 375

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
             +  P+A++++  ++ + G ++    V + M   G  P+ ++YN +L  +GK G+   A
Sbjct: 376 SVELSPLAYALMITIYRKLGRFEEALEVFEAMLGAGYYPDSLIYNMVLHMLGKLGRYDEA 435

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
             +F  M    L   + +   ++ I  KA   + A  ++  M+  + P+D ++Y +++++
Sbjct: 436 VDVFTAMQRQELCTSKYSYATMLHICEKADKFELAASIFSDMQMKRCPVDEVVYTSVISI 495

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GL +EAE+LF++M        D  +++ M N+    G  + A+++ EE+   G+ +
Sbjct: 496 YGKAGLYDEAEKLFQEMNELRLL-VDVKTFSVMANVRLKAGKYNEAVQVMEELLAKGLNL 554

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGV 499
           +      L+ C  KA  ++   + F   ++ G+
Sbjct: 555 DDTAWKTLLHCYVKAGNVERATKTFKTLVESGI 587



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 133/286 (46%), Gaps = 1/286 (0%)

Query: 217  EIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV 276
            E+  +N  YS+++     CN  ++A    E+M + GL  D V  S +L+ Y+K+G VE+ 
Sbjct: 787  ELPRNNFVYSSMVGALINCNQLEKAAGLVEKMRQIGLKCDSVLVSILLNAYSKAGLVEDA 846

Query: 277  LSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA 336
             +L       G   D +A++ + K    +G           + +LG++P+L  Y+T++  
Sbjct: 847  DALIHMARGDGIPLDIVAYNTIIKADLRAGRLKKAIDTYSSLTNLGLRPSLQTYDTMISV 906

Query: 337  MGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMD 396
              K+G+   A  +F ++  +G  PDEK  + ++  Y K+   + A +L+E M+       
Sbjct: 907  FAKSGRTRDAEKMFKDLKSAGFQPDEKVYSQMMNCYAKSGMYEHAADLFEAMKLRGLRPH 966

Query: 397  FILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELF 456
             + YN L++  A  G   +AE+L  +M  +  C P + ++  +++ Y   G  + A    
Sbjct: 967  EVSYNNLIDAYARAGQFAKAEQLLVEMAKAG-CPPSSVTFLLLISAYAHRGKCNEAENAL 1025

Query: 457  EEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            E M    +   V     ++    +AR     +  +      G++PD
Sbjct: 1026 ERMQTAAIRPTVRHYNEVMLAFSRARLPSQAMESYLKMERSGIQPD 1071



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 94/416 (22%), Positives = 179/416 (43%), Gaps = 53/416 (12%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERM-YKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYE 281
           +T+  + T  K    + EA E+F  M  +   +P  + YS +L VY +  ++    + ++
Sbjct: 241 LTFRELCTVLKWQQGWKEAQEFFAWMKLQLSYIPSVIVYSMLLKVYGRDKQIGLAEAAFQ 300

Query: 282 RGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG 341
             +     PD +AFS +   +  +  +D +  + + M S G+ P+ V Y T+L  + KA 
Sbjct: 301 EMLDQKLDPDEVAFSTMILNYANAEMFDEMLTMYEAMMSRGIVPSSVTYTTMLIHLNKAE 360

Query: 342 KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYN 401
           +   A  L++++VE  +         +I IY K    ++ALE++E M    +  D ++YN
Sbjct: 361 RLADAALLWEDLVEESVELSPLAYALMITIYRKLGRFEEALEVFEAMLGAGYYPDSLIYN 420

Query: 402 TLLNMCADIGLVEEAERLFEDMKLSDYC--------------KPDNYS------------ 435
            +L+M   +G  +EA  +F  M+  + C              K D +             
Sbjct: 421 MVLHMLGKLGRYDEAVDVFTAMQRQELCTSKYSYATMLHICEKADKFELAASIFSDMQMK 480

Query: 436 --------YTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
                   YT++++IYG  G  D A +LF+EM+EL + ++V   + +     KA + ++ 
Sbjct: 481 RCPVDEVVYTSVISIYGKAGLYDEAEKLFQEMNELRLLVDVKTFSVMANVRLKAGKYNEA 540

Query: 488 VRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANP----------KLV 537
           V+V    + +G+  DD     LL         E   K    L ++             L 
Sbjct: 541 VQVMEELLAKGLNLDDTAWKTLLHCYVKAGNVERATKTFKTLVESGIADLMAYNDMLSLY 600

Query: 538 AFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELL 593
           A  +++ED    F+         +K + +   + +   ++ +  N N+   A E+L
Sbjct: 601 AEFDMLEDAKLLFQQ--------LKSSSIQPDQVWFGTMVKLYCNANMVAAAEEVL 648



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 112/240 (46%), Gaps = 2/240 (0%)

Query: 183  FPMETIFYNVTMKS-LRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEA 241
             P++ + YN  +K+ LR GR  + I+  ++ + +  +     TY T+I+   +     +A
Sbjct: 858  IPLDIVAYNTIIKADLRAGRLKKAIDTYSS-LTNLGLRPSLQTYDTMISVFAKSGRTRDA 916

Query: 242  IEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKM 301
             + F+ +   G  PDE  YS +++ YAKSG  E    L+E     G +P  ++++ L   
Sbjct: 917  EKMFKDLKSAGFQPDEKVYSQMMNCYAKSGMYEHAADLFEAMKLRGLRPHEVSYNNLIDA 976

Query: 302  FGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD 361
            +  +G +     +L EM   G  P+ V +  L+ A    GK   A +  + M  + + P 
Sbjct: 977  YARAGQFAKAEQLLVEMAKAGCPPSSVTFLLLISAYAHRGKCNEAENALERMQTAAIRPT 1036

Query: 362  EKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFE 421
             +    ++  + +AR    A+E + +M  +    D +   T++ +  +  + EE   L++
Sbjct: 1037 VRHYNEVMLAFSRARLPSQAMESYLKMERSGIQPDVVSSRTMIRILLEGSMFEEGLSLYK 1096



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 136/312 (43%), Gaps = 15/312 (4%)

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           P++ + Y   +        +   E+L  EM    + +D  T+S +     +   ++EA++
Sbjct: 483 PVDEVVYTSVISIYGKAGLYDEAEKLFQEMNELRLLVDVKTFSVMANVRLKAGKYNEAVQ 542

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
             E +   GL  D+  +  +L  Y K+G VE     ++  V SG   D +A++ +  ++ 
Sbjct: 543 VMEELLAKGLNLDDTAWKTLLHCYVKAGNVERATKTFKTLVESGI-ADLMAYNDMLSLYA 601

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
           E    +  + + Q++KS  +QP+ V + T+++    A     A  +  +M E G TPD  
Sbjct: 602 EFDMLEDAKLLFQQLKSSSIQPDQVWFGTMVKLYCNANMVAAAEEVLRQMREKGFTPDHI 661

Query: 364 TLTALIKIYGKARWAKDALELWE-RMRENKWPMDFILYNTLLNMCADIGLVEEA----ER 418
           T   LI  YG+A   ++A  L E   +E++     I   + + +C    L ++A     R
Sbjct: 662 TQGILINAYGEANRIEEAAGLLEASAKEDESEAAAI---SRIYLCLKFRLFDKATLLLHR 718

Query: 419 LFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL 478
           + E   L      D+ +Y  +   +   G V  A  L   M + G  +       LI   
Sbjct: 719 VLESFTL------DSAAYNQLTINFLKAGQVPPAEMLHSRMQDKGFDVEDSTLGHLIAAY 772

Query: 479 GKARRIDDLVRV 490
           GKA R + L ++
Sbjct: 773 GKAGRYEVLTKL 784



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 88/398 (22%), Positives = 168/398 (42%), Gaps = 55/398 (13%)

Query: 202 QFQLIEQ---LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEV 258
           +F ++E    L  ++ S+ I+ D + + T++      N+   A E   +M + G  PD +
Sbjct: 602 EFDMLEDAKLLFQQLKSSSIQPDQVWFGTMVKLYCNANMVAAAEEVLRQMREKGFTPDHI 661

Query: 259 TYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEM 318
           T   +++ Y ++ ++EE   L E    +  K D    + + ++      Y  +++ L + 
Sbjct: 662 TQGILINAYGEANRIEEAAGLLE----ASAKEDESEAAAISRI------YLCLKFRLFDK 711

Query: 319 KSLGVQPNL-------VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371
            +L +   L         YN L     KAG+   A  L   M + G   ++ TL  LI  
Sbjct: 712 ATLLLHRVLESFTLDSAAYNQLTINFLKAGQVPPAEMLHSRMQDKGFDVEDSTLGHLIAA 771

Query: 372 YGKA-RWA-----------------------------KDALELWERMRENKWPMDFILYN 401
           YGKA R+                              + A  L E+MR+     D +L +
Sbjct: 772 YGKAGRYEVLTKLKPELPRNNFVYSSMVGALINCNQLEKAAGLVEKMRQIGLKCDSVLVS 831

Query: 402 TLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461
            LLN  +  GLVE+A+ L   M   D    D  +Y  ++      G +  AI+ +  ++ 
Sbjct: 832 ILLNAYSKAGLVEDADALIH-MARGDGIPLDIVAYNTIIKADLRAGRLKKAIDTYSSLTN 890

Query: 462 LGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVS---LCET 518
           LG+  ++     +I    K+ R  D  ++F      G +PD+++   +++  +   + E 
Sbjct: 891 LGLRPSLQTYDTMISVFAKSGRTRDAEKMFKDLKSAGFQPDEKVYSQMMNCYAKSGMYEH 950

Query: 519 SEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEE 556
           + D+ + +  L+   P  V++ NLI+  +   +  K E
Sbjct: 951 AADLFEAMK-LRGLRPHEVSYNNLIDAYARAGQFAKAE 987



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 90/181 (49%)

Query: 207  EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
            E++  ++ S   + D   YS ++ C  +  +++ A + FE M   GL P EV+Y+ ++D 
Sbjct: 917  EKMFKDLKSAGFQPDEKVYSQMMNCYAKSGMYEHAADLFEAMKLRGLRPHEVSYNNLIDA 976

Query: 267  YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
            YA++G+  +   L      +G  P  + F +L   +   G  +     L+ M++  ++P 
Sbjct: 977  YARAGQFAKAEQLLVEMAKAGCPPSSVTFLLLISAYAHRGKCNEAENALERMQTAAIRPT 1036

Query: 327  LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
            +  YN ++ A  +A  P  A   + +M  SG+ PD  +   +I+I  +    ++ L L++
Sbjct: 1037 VRHYNEVMLAFSRARLPSQAMESYLKMERSGIQPDVVSSRTMIRILLEGSMFEEGLSLYK 1096

Query: 387  R 387
            +
Sbjct: 1097 K 1097


>gi|115482712|ref|NP_001064949.1| Os10g0495200 [Oryza sativa Japonica Group]
 gi|78708847|gb|ABB47822.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639558|dbj|BAF26863.1| Os10g0495200 [Oryza sativa Japonica Group]
          Length = 782

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 162/335 (48%), Gaps = 3/335 (0%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
           +EM+   I  D +TYS+II    +    D+A+E    M K G+MPD +TY++IL  Y  S
Sbjct: 225 HEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSS 284

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
           G+ +E +   ++  + G +P+ + +S L     ++G     R +   M   G++P++  Y
Sbjct: 285 GQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATY 344

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
            TLL+     G      +L D MV +G+ PD      LI  Y K      A+ ++ +MR+
Sbjct: 345 RTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQ 404

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
           +    + + Y T++++    G V++A   FE M + +   P+   YT++++   +    D
Sbjct: 405 HGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQM-IDEGLTPNIIVYTSLIHGLCTCDKWD 463

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
            A EL  EM + G+ +N +    +I    K  R+ +  ++F + +  GVKPD      L+
Sbjct: 464 KAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLI 523

Query: 511 SVVSLCETSEDVGKVITCLQQAN--PKLVAFLNLI 543
               L    ++  K++  +      P +V +  LI
Sbjct: 524 DGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLI 558



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/356 (26%), Positives = 173/356 (48%), Gaps = 4/356 (1%)

Query: 148 IPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIE 207
           +P   T  + +  L   +   K+    N +    + P    + ++       G+  + I 
Sbjct: 233 LPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIG 292

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
            L  +M S+ +E + +TYS+++    +     EA + F+ M K GL PD  TY  +L  Y
Sbjct: 293 TL-KKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGY 351

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
           A  G + E+ +L +  V +G +PD   F++L   + +    D    V  +M+  G+ PN+
Sbjct: 352 ATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNV 411

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK-IYGKARWAKDALELWE 386
           V Y T+++ + K+G    A   F++M++ GLTP+    T+LI  +    +W K A EL  
Sbjct: 412 VCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDK-AEELIL 470

Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
            M +    ++ I +N++++     G V E+E+LF D+ +    KPD  +Y  +++     
Sbjct: 471 EMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLF-DLMVRIGVKPDIITYNTLIDGCCLA 529

Query: 447 GNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           G +D A +L   M  +GV  +++    LI    +  R+DD + +F   +  GV P+
Sbjct: 530 GKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPN 585



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 81/346 (23%), Positives = 153/346 (44%), Gaps = 45/346 (13%)

Query: 198 RFGRQFQLIEQLANEMVSNEIELDNITYSTIIT--CAKRCNLFDEAIEWFERMYKTGLMP 255
           R GR       L N +V     +D IT++ ++   CA +    D       RM + G +P
Sbjct: 104 RAGRLDLGFAALGN-VVKKGFRVDAITFTPLLKGLCADK-RTSDAMDIVLRRMTELGCIP 161

Query: 256 DEVTYSAILDVYAKSGKVEEVLSLY-----ERGVASGWKPDPIAFSVLGKMFGESGDYDG 310
           D  +Y+ +L       + +E L L      +RG   G  PD ++++ +   F + GD D 
Sbjct: 162 DVFSYNNLLKGLCDENRSQEALELLHMMADDRG--GGSPPDVVSYNTVLNGFFKEGDSDK 219

Query: 311 IRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK 370
                 EM   G+ P++V Y++++ A+ KA     A  + + MV++G+ PD  T  +++ 
Sbjct: 220 AYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILH 279

Query: 371 IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFE--------- 421
            Y  +   K+A+   ++MR +    + + Y++L+N     G   EA ++F+         
Sbjct: 280 GYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEP 339

Query: 422 -------------------------DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELF 456
                                    D+ + +  +PD++ +  ++  Y     VD A+ +F
Sbjct: 340 DIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVF 399

Query: 457 EEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            +M + G+  NV+    +I  L K+  +DD +  F   ID G+ P+
Sbjct: 400 SKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPN 445



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 144/334 (43%), Gaps = 36/334 (10%)

Query: 206 IEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
           +  L + MV N I+ D+  ++ +I    +    D+A+  F +M + GL P+ V Y  ++D
Sbjct: 360 MHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVID 419

Query: 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325
           V  KSG V++ +  +E+ +  G  P+ I ++ L         +D    ++ EM   G+  
Sbjct: 420 VLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICL 479

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
           N + +N+++++  K G+   +  LFD MV  G+ PD  T   LI     A    +A +L 
Sbjct: 480 NTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLL 539

Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML----- 440
             M       D + Y TL+N    +  +++A  LF++M +S    P+  +Y  +L     
Sbjct: 540 ASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEM-VSSGVSPNIITYNIILQGLFH 598

Query: 441 ------------NIYGSGGNV------------------DNAIELFEEMSELGVAINVMG 470
                       +I  SG  +                  D A+ +F+ +    + +    
Sbjct: 599 TRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRT 658

Query: 471 CTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR 504
              +I  L K  R+D+   +F      G+ PD R
Sbjct: 659 FNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVR 692



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/320 (22%), Positives = 143/320 (44%), Gaps = 15/320 (4%)

Query: 170 SYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTII 229
           +  +F  +  + L P   I Y   +  L    ++   E+L  EM+   I L+ I +++II
Sbjct: 430 AMLYFEQMIDEGLTP-NIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSII 488

Query: 230 TCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWK 289
               +     E+ + F+ M + G+ PD +TY+ ++D    +GK++E   L    V+ G K
Sbjct: 489 DSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVK 548

Query: 290 PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSL 349
           PD + +  L   +      D    + +EM S GV PN++ YN +L+ +    +   A+ L
Sbjct: 549 PDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKEL 608

Query: 350 FDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCAD 409
           +  + +SG   +  T   ++    K     +AL +++ +      ++   +N ++     
Sbjct: 609 YVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLK 668

Query: 410 IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVM 469
            G ++EA+ LF     ++   PD  +Y+ M       G+++   +LF  M E G      
Sbjct: 669 CGRMDEAKDLFAAHS-ANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENG------ 721

Query: 470 GCTCLIQCLGKARRIDDLVR 489
                  C   +R ++ +VR
Sbjct: 722 -------CSADSRMLNSIVR 734



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/327 (22%), Positives = 152/327 (46%), Gaps = 7/327 (2%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           TY+ +I C  R    D        + K G   D +T++ +L       +  + + +  R 
Sbjct: 94  TYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRR 153

Query: 284 VAS-GWKPDPIAFSVLGKMFGE---SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
           +   G  PD  +++ L K   +   S +   + +++ + +  G  P++V YNT+L    K
Sbjct: 154 MTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFK 213

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
            G    A S + EM++ G+ PD  T +++I    KA+    A+E+   M +N    D + 
Sbjct: 214 EGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMT 273

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           YN++L+     G  +EA    + M+ SD  +P+  +Y++++N     G    A ++F+ M
Sbjct: 274 YNSILHGYCSSGQPKEAIGTLKKMR-SDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSM 332

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETS 519
           ++ G+  ++     L+Q       + ++  +  + +  G++PD  +   L+   +  E  
Sbjct: 333 TKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKV 392

Query: 520 EDVGKVITCLQQA--NPKLVAFLNLIE 544
           +    V + ++Q   NP +V +  +I+
Sbjct: 393 DQAMLVFSKMRQHGLNPNVVCYGTVID 419



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 79/183 (43%), Gaps = 3/183 (1%)

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382
           V P +  Y  L+    +AG+  L  +    +V+ G   D  T T L+K     +   DA+
Sbjct: 88  VTPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAM 147

Query: 383 EL-WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK--LSDYCKPDNYSYTAM 439
           ++   RM E     D   YN LL    D    +EA  L   M         PD  SY  +
Sbjct: 148 DIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTV 207

Query: 440 LNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGV 499
           LN +   G+ D A   + EM + G+  +V+  + +I  L KA+ +D  + V    +  GV
Sbjct: 208 LNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGV 267

Query: 500 KPD 502
            PD
Sbjct: 268 MPD 270



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/169 (21%), Positives = 80/169 (47%), Gaps = 1/169 (0%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F  + S  + P   I YN+ ++ L   R+    ++L   +  +  +L+  TY+ I+   
Sbjct: 573 LFKEMVSSGVSP-NIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGL 631

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            + NL DEA+  F+ +  T L  +  T++ ++    K G+++E   L+    A+G  PD 
Sbjct: 632 CKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDV 691

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG 341
             +S++ +   E G  + +  +   M+  G   +  + N+++  + + G
Sbjct: 692 RTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRG 740



 Score = 39.7 bits (91), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 29/136 (21%), Positives = 58/136 (42%), Gaps = 2/136 (1%)

Query: 172 FFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITC 231
            + +  KS     + T  YN+ +  L          ++   +   +++L+  T++ +I  
Sbjct: 608 LYVSITKSGTQLELST--YNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGA 665

Query: 232 AKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291
             +C   DEA + F      GL+PD  TYS + +   + G +EE+  L+     +G   D
Sbjct: 666 LLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSAD 725

Query: 292 PIAFSVLGKMFGESGD 307
               + + +   + GD
Sbjct: 726 SRMLNSIVRKLLQRGD 741


>gi|359477281|ref|XP_003631958.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Vitis vinifera]
          Length = 898

 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 85/293 (29%), Positives = 148/293 (50%), Gaps = 4/293 (1%)

Query: 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
            +EA   FE M      P+ VT+S+++D   K G+V++  SLYE+ +  G  P  I ++ 
Sbjct: 455 LEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTS 514

Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
           L + F + G  +    + +EM   G  P+L + NT ++ + KAG+    R+LF E+   G
Sbjct: 515 LIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHG 574

Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417
             PD ++ + LI    KA  A +  EL+  M+E    +D   YN +++     G V +A 
Sbjct: 575 FIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAY 634

Query: 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
           +L E+MK+  +  P   +Y ++++       +D A  LFEE    G+ +NV+  + LI  
Sbjct: 635 QLLEEMKVKGH-PPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDG 693

Query: 478 LGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQ 530
            GK  RID+   +    + +G+ P+     CLL  +     +E++ + + C Q
Sbjct: 694 FGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALV---KAEEINEALICFQ 743



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/349 (24%), Positives = 154/349 (44%), Gaps = 38/349 (10%)

Query: 144 AITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQF 203
           +++ +  +P  E  + +L  LK    +  +F W + Q         YN  +  +    +F
Sbjct: 82  SLSALGEKPLPELVIGVLKRLKDANTAVNYFQWAEKQTEKVHCPEAYNSLLMVMARNTEF 141

Query: 204 QLIEQLANEM-VSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSA 262
             +E++  EM +S      NI+   +  C K   L  EA +  + M K    P    Y+ 
Sbjct: 142 DHLERILEEMSLSGFGPSSNISIELVANCVKSRKL-REAFDIIQTMRKFKFRPAFSAYTI 200

Query: 263 ILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG 322
           ++   ++  + + +L L+ +    G++ +   F+ L ++F   G  D    +L EMKS  
Sbjct: 201 LIGALSEVREPDPMLILFHQMQELGYEVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNS 260

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382
           +  ++V+YN  ++  GKAGK  ++   F EM   GL PD+ T T++I +  KA    +A+
Sbjct: 261 LDADIVLYNVCIDCFGKAGKVDMSWKFFHEMKSHGLMPDDVTYTSMIGVLCKANRLDEAV 320

Query: 383 ELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNI 442
           EL+E++ +N+       YNT                                    M+  
Sbjct: 321 ELFEQLEQNRKVPCAYAYNT------------------------------------MIMG 344

Query: 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           YGS G  D A  L E     G   +V+   C++ CLGK RR+++ +R+F
Sbjct: 345 YGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIF 393



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 144/312 (46%), Gaps = 3/312 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D  +YS +I    +  L +E  E F  M + G + D   Y+A++D + KSGKV +   L 
Sbjct: 578 DARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLL 637

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
           E     G  P  + +  +     +    D    + +E KS G++ N+VVY++L++  GK 
Sbjct: 638 EEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKV 697

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G+   A  + +E+++ GLTP+  T   L+    KA    +AL  ++ M++ K P + I Y
Sbjct: 698 GRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITY 757

Query: 401 NTLLNMCADIGLVEEAERLFEDM-KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           + L+N    +    +A   +++M KL    KP+  +YT M++     GN+  A  LF   
Sbjct: 758 SILINGLCRVRKFNKAFVFWQEMQKLG--LKPNTITYTTMISGLAKAGNILEASGLFSRF 815

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETS 519
              G   +      +I+ L  A +  D   +F  +  +G     + C  LL  +   E  
Sbjct: 816 KANGGIPDSASYNAMIEGLSSANKAMDAYALFEETRLKGCNIHTKTCVVLLDALHKAECL 875

Query: 520 EDVGKVITCLQQ 531
           E    V   L++
Sbjct: 876 EQAAIVGAVLKE 887



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 78/274 (28%), Positives = 129/274 (47%), Gaps = 1/274 (0%)

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
           LD   Y+ +I    +    ++A +  E M   G  P  VTY +++D  AK  +++E   L
Sbjct: 612 LDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYML 671

Query: 280 YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
           +E   ++G K + + +S L   FG+ G  D    +++E+   G+ PN+  +N LL+A+ K
Sbjct: 672 FEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVK 731

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
           A +   A   F  M +    P++ T + LI    + R    A   W+ M++     + I 
Sbjct: 732 AEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTIT 791

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           Y T+++  A  G + EA  LF   K ++   PD+ SY AM+    S     +A  LFEE 
Sbjct: 792 YTTMISGLAKAGNILEASGLFSRFK-ANGGIPDSASYNAMIEGLSSANKAMDAYALFEET 850

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGV 493
              G  I+   C  L+  L KA  ++    V  V
Sbjct: 851 RLKGCNIHTKTCVVLLDALHKAECLEQAAIVGAV 884



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 85/336 (25%), Positives = 147/336 (43%), Gaps = 9/336 (2%)

Query: 170 SYFFFNWIKSQNLFPMETIF---YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           S+ FF+ +KS  L P +  +     V  K+ R     +L EQL      N        Y+
Sbjct: 284 SWKFFHEMKSHGLMPDDVTYTSMIGVLCKANRLDEAVELFEQLEQ----NRKVPCAYAYN 339

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T+I        FDEA    ER    G +P  + Y+ IL    K  +VEE L ++E  +  
Sbjct: 340 TMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEE-MKR 398

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
              P+   +++L  M    G  +    +  +M+  G+ PN++  N +++ + KA K   A
Sbjct: 399 DAVPNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEA 458

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            S+F+ M +   TP+  T ++LI   GK     DA  L+E+M +       I+Y +L+  
Sbjct: 459 CSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRS 518

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               G  E+  +++++M +   C PD       ++     G  +    LF E++  G   
Sbjct: 519 FFKCGRKEDGHKIYKEM-VHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIP 577

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           +    + LI  L KA   ++   +F    ++G   D
Sbjct: 578 DARSYSILIHGLVKAGLANETYELFYAMKEQGCVLD 613



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/224 (20%), Positives = 97/224 (43%), Gaps = 5/224 (2%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ--LANEMVSNEIELDNITYS 226
           ++Y  F   KS N   +  + Y+  +    FG+  ++ E   +  E++   +  +  T++
Sbjct: 667 EAYMLFEEAKS-NGIKLNVVVYSSLIDG--FGKVGRIDEAYLIMEELMQKGLTPNVYTWN 723

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
            ++    +    +EA+  F+ M      P+++TYS +++   +  K  +    ++     
Sbjct: 724 CLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKL 783

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G KP+ I ++ +     ++G+      +    K+ G  P+   YN ++E +  A K   A
Sbjct: 784 GLKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGIPDSASYNAMIEGLSSANKAMDA 843

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
            +LF+E    G     KT   L+    KA   + A  +   ++E
Sbjct: 844 YALFEETRLKGCNIHTKTCVVLLDALHKAECLEQAAIVGAVLKE 887


>gi|242065464|ref|XP_002454021.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
 gi|241933852|gb|EES06997.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
          Length = 729

 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 87/306 (28%), Positives = 154/306 (50%), Gaps = 1/306 (0%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + Y   +KSL    +++ +E+L  EM SN+   D +T++TI+T   +  L D AI+  
Sbjct: 266 DAVTYTPVLKSLCGSERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVV 325

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           + M + G +PD VTYS+ILD     G+V++ + L  R  + G KPD IA++ + K     
Sbjct: 326 DHMSEHGCIPDIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSI 385

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
             ++    ++ EM      P+ V +NT++ ++ + G    A  + ++M E+G  PD  T 
Sbjct: 386 EQWEHAEELMAEMVCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTY 445

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
            ++I      R   DA+EL   ++      D + +NTLL     +   E+AE+L  +M  
Sbjct: 446 NSIIDGLCNERCIDDAMELLSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMH 505

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
           SD C PD  ++  ++      G +  AIE  + M+E G   N      ++  L KA +  
Sbjct: 506 SD-CPPDATTFNTVITSLCQKGLLLQAIETLKIMAENGCIPNQSTYNIVVDALLKAGKTQ 564

Query: 486 DLVRVF 491
           + +++ 
Sbjct: 565 EALKLL 570



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/372 (23%), Positives = 172/372 (46%), Gaps = 17/372 (4%)

Query: 179 SQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLF 238
           S    P+  +  N+ +K L  G +    E++   + ++      +TY+T++    R    
Sbjct: 90  SGKCLPLPVVPCNILIKRLCSGGRVADAERVFATLGASATV---VTYNTMVNGYCRAGRI 146

Query: 239 DEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
           ++A      M      PD  T++ ++      G+V + L++++  +  G  P  + +S+L
Sbjct: 147 EDARRLISGM---PFPPDTFTFNPLIRALCVRGRVPDALAVFDDMLHRGCSPSVVTYSIL 203

Query: 299 GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
                ++  Y     +L EM++ G +P++V YN L+ AM   G    A ++  ++   G 
Sbjct: 204 LDATCKASGYRQAMVLLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSDLPSHGC 263

Query: 359 TPDEKTLTALIK-IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417
            PD  T T ++K + G  RW K+  EL+  M  NK   D + +NT++      GLV+ A 
Sbjct: 264 KPDAVTYTPVLKSLCGSERW-KEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAI 322

Query: 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
           ++ + M     C PD  +Y+++L+     G VD+A+EL   +   G   + +  T +++ 
Sbjct: 323 KVVDHMS-EHGCIPDIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKG 381

Query: 478 LGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ-----A 532
           L    + +    +    +     PD+     +++  SLC+    V + I  ++Q      
Sbjct: 382 LCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVIA--SLCQKGL-VDRAIKVVEQMSENGC 438

Query: 533 NPKLVAFLNLIE 544
           NP +V + ++I+
Sbjct: 439 NPDIVTYNSIID 450



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 152/331 (45%), Gaps = 4/331 (1%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
             + +KS    P +TI Y   +K L    Q++  E+L  EMV ++   D +T++T+I   
Sbjct: 359 LLSRLKSYGCKP-DTIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVIASL 417

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +  L D AI+  E+M + G  PD VTY++I+D       +++ + L     + G KPD 
Sbjct: 418 CQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDI 477

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           + F+ L K       ++    ++  M      P+   +NT++ ++ + G    A      
Sbjct: 478 VTFNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPDATTFNTVITSLCQKGLLLQAIETLKI 537

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M E+G  P++ T   ++    KA   ++AL+L   M  N  P D I YNT+++     G 
Sbjct: 538 MAENGCIPNQSTYNIVVDALLKAGKTQEALKLLSGM-TNGTP-DLITYNTVISNITKAGK 595

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
           +EEA  L   M +S+   PD  +Y ++          D AI +   + ++G++ +     
Sbjct: 596 MEEALDLLRVM-VSNGLSPDTITYRSLAYGICREDGTDRAIRMLCRLQDMGLSPDATFYN 654

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
            ++    +  R D  +  F   +  G  PD+
Sbjct: 655 DILLGFCQNWRTDIAIDCFAHMVSSGCMPDE 685



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 130/298 (43%), Gaps = 36/298 (12%)

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           +A+  F+ M   G  P  VTYS +LD   K+    + + L +   A G +PD + ++VL 
Sbjct: 180 DALAVFDDMLHRGCSPSVVTYSILLDATCKASGYRQAMVLLDEMRAKGCEPDIVTYNVLI 239

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
                 GD D    +L ++ S G +P+ V Y  +L+++  + +      LF EM  +   
Sbjct: 240 NAMCNEGDVDEALNILSDLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELFAEMASNKCA 299

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
           PDE T   ++    +      A+++ + M E+    D + Y+++L+   D+G V++A  L
Sbjct: 300 PDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGRVDDAVEL 359

Query: 420 FEDMKLSDYCKPDNYSYTAMLNIYGS---------------------------------- 445
              +K S  CKPD  +YT +L    S                                  
Sbjct: 360 LSRLK-SYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVIASLC 418

Query: 446 -GGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
             G VD AI++ E+MSE G   +++    +I  L   R IDD + +       G KPD
Sbjct: 419 QKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPD 476



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 123/286 (43%), Gaps = 52/286 (18%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + +N  +K L    +++  EQL   M+ ++   D  T++T+IT   +  L  +AIE  
Sbjct: 476 DIVTFNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPDATTFNTVITSLCQKGLLLQAIETL 535

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           + M + G +P++ TY+ ++D   K+GK +E L L   G+ +G                  
Sbjct: 536 KIMAENGCIPNQSTYNIVVDALLKAGKTQEALKLLS-GMTNG------------------ 576

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
                              P+L+ YNT++  + KAGK   A  L   MV +GL+PD  T 
Sbjct: 577 ------------------TPDLITYNTVISNITKAGKMEEALDLLRVMVSNGLSPDTITY 618

Query: 366 TALIKIYGKAR--WAKDALELWERMRENKWPMDFILYN-TLLNMC----ADIGLVEEAER 418
            +L   YG  R      A+ +  R+++     D   YN  LL  C     DI +      
Sbjct: 619 RSLA--YGICREDGTDRAIRMLCRLQDMGLSPDATFYNDILLGFCQNWRTDIAI-----D 671

Query: 419 LFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
            F  M +S  C PD  +Y  +L        +D A +L   +  LGV
Sbjct: 672 CFAHM-VSSGCMPDESTYIILLEALAYECLLDEAKQLLVNLCSLGV 716


>gi|222628658|gb|EEE60790.1| hypothetical protein OsJ_14375 [Oryza sativa Japonica Group]
          Length = 754

 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 145/287 (50%), Gaps = 1/287 (0%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           TY+ +I C +R    D  +  F R+ +TGL PD  +Y+A++D ++K G+V++   L+ + 
Sbjct: 120 TYNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKAHDLFYKM 179

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
              G  P+ + +S L     ++ + D    VL++M   GV+PN + YN L+     +G  
Sbjct: 180 EEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYSTSGMW 239

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
             +  +F EM  S L PD     + +    K    K+A ++++ M       D I Y  L
Sbjct: 240 KESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVISYGAL 299

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           L+  A  G +   + LF  M + +   PD + +  ++N Y   G +D ++ +FE+M++ G
Sbjct: 300 LHGYATAGCIAGMDNLFNVM-VCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQG 358

Query: 464 VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
           V  +++  + +I    +  R+DD +  F   ID GV PD  +  CL+
Sbjct: 359 VNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLI 405



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 153/300 (51%), Gaps = 4/300 (1%)

Query: 187 TIF-YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           TI+ YN+ +   R  R+  L   +   ++   +  D  +Y+ +I    +    D+A + F
Sbjct: 117 TIYTYNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKAHDLF 176

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
            +M + G+MP+ VTYS++++   K+ ++++   +  + V +G +P+ + ++ L   +  S
Sbjct: 177 YKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYSTS 236

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G +     V +EM S  + P++   N+ + A+ K G+   AR +FD MV  G  PD  + 
Sbjct: 237 GMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVISY 296

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
            AL+  Y  A        L+  M       D  ++NTL+N  A +G+++++  +FEDM  
Sbjct: 297 GALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMT- 355

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
                PD  +++ +++ +   G +D+A+E F  M + GV  +    +CLIQ  G+  R D
Sbjct: 356 KQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQ--GQCNRRD 413



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 81/360 (22%), Positives = 162/360 (45%), Gaps = 38/360 (10%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
            K++  F  ++ Q + P   + Y+  +  L   ++    E++  +MV   +  +N+TY+ 
Sbjct: 170 DKAHDLFYKMEEQGIMP-NVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNC 228

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           +I       ++ E++  F+ M  + L+PD    ++ +    K G+++E   +++  V  G
Sbjct: 229 LIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKG 288

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
            KPD I++  L   +  +G   G+  +   M   GV P+  V+NTL+ A  + G    + 
Sbjct: 289 PKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSL 348

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL-NM 406
            +F++M + G+ PD  T + +I  + +     DA+E +  M +   P D  +Y+ L+   
Sbjct: 349 LMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQ 408

Query: 407 CADIGLVEEAERLFEDM---------------KLSDYCK--------------------P 431
           C    LV +A+ L  DM                +++ CK                    P
Sbjct: 409 CNRRDLV-KAKELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAEGKDVVDLIIHTGQRP 467

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           +  ++ ++++ Y   GN+  A+ L + M  +GV  ++     L+    K  RIDD + +F
Sbjct: 468 NLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDALTLF 527



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 141/297 (47%), Gaps = 10/297 (3%)

Query: 206 IEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
           ++ L N MV   +  D   ++T+I    R  + D+++  FE M K G+ PD +T+S ++ 
Sbjct: 312 MDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVIS 371

Query: 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325
            + + G++++ +  +   + +G  PD   +S L +      D    + ++ +M S G+ P
Sbjct: 372 AFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPP 431

Query: 326 NLV-VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384
             +  + +++  + K G+    + + D ++ +G  P+  T  +L+  Y      K+A+ L
Sbjct: 432 PCIKFFTSIINNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGL 491

Query: 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYG 444
            + M       D   YNTL++     G +++A  LF DM L       + SY  +L+   
Sbjct: 492 LDSMESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDM-LHKRVTLTSVSYNIILHGLF 550

Query: 445 SGGNVDNAIELFEEMSELGVAIN------VMGCTCLIQCLGKARRIDDLVRVFGVSI 495
                  A E+F EM E G+A++      V+G  C   C  +A  +  L ++F +++
Sbjct: 551 QARRTIVAKEMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANML--LEKLFSMNV 605



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/337 (23%), Positives = 137/337 (40%), Gaps = 44/337 (13%)

Query: 164 LKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNI 223
           L    KS   F  +  Q + P    F  V     R GR    +E+  N M+   +  D  
Sbjct: 341 LGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKF-NHMIDTGVPPDTA 399

Query: 224 TYSTIITCAKRCNLFD--EAIEWFERMYKTGLMPDEVTY-SAILDVYAKSGKVEEVLSLY 280
            YS +I    +CN  D  +A E    M   G+ P  + + ++I++   K G+V E   + 
Sbjct: 400 VYSCLIQ--GQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAEGKDVV 457

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
           +  + +G +P+ I F+ L   +   G+      +L  M+S+GV+P++  YNTL++   K 
Sbjct: 458 DLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKH 517

Query: 341 GK---------------------------PGL--------ARSLFDEMVESGLTPDEKTL 365
           G+                            GL        A+ +F EM+ESG+     T 
Sbjct: 518 GRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAKEMFHEMIESGMAVSIHTY 577

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
             ++    +     +A  L E++       D + +N ++     +G  +EA+ LF    +
Sbjct: 578 ATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFKVGRRQEAKELFA--AI 635

Query: 426 SDY-CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461
           S Y   P   +Y  M+       + ++A  LF  M +
Sbjct: 636 STYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEK 672



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/210 (19%), Positives = 97/210 (46%), Gaps = 4/210 (1%)

Query: 185 METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEW 244
           + ++ YN+ +  L   R+  + +++ +EM+ + + +   TY+T++    R N  DEA   
Sbjct: 537 LTSVSYNIILHGLFQARRTIVAKEMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANML 596

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
            E+++   +  D +T++ ++    K G+ +E   L+      G  P  + + V+     +
Sbjct: 597 LEKLFSMNVKFDILTFNIVIRAMFKVGRRQEAKELFAAISTYGLVPTILTYRVMITNLIK 656

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
              ++    +   M+     P+  + N ++  +   G+   A +   ++ + G+ P+  T
Sbjct: 657 EESFEDADNLFSSMEKSSCTPDSRILNEIIRMLLNKGEVAKAGNYLSKIDKKGILPEATT 716

Query: 365 LTALIKIY---GKAR-WAKDALELWERMRE 390
            + LI ++   GK R + K   E +  +RE
Sbjct: 717 TSLLIYLFSVNGKYREYIKLLPEKYRFLRE 746



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 92/208 (44%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L + M S  +E D  TY+T++    +    D+A+  F  M    +    V+Y+ IL    
Sbjct: 491 LLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLF 550

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           ++ +      ++   + SG       ++ +      +   D    +L+++ S+ V+ +++
Sbjct: 551 QARRTIVAKEMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDIL 610

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            +N ++ AM K G+   A+ LF  +   GL P   T   +I    K    +DA  L+  M
Sbjct: 611 TFNIVIRAMFKVGRRQEAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSM 670

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEA 416
            ++    D  + N ++ M  + G V +A
Sbjct: 671 EKSSCTPDSRILNEIIRMLLNKGEVAKA 698



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 80/197 (40%), Gaps = 13/197 (6%)

Query: 331 NTLLEAMGKAGK-------PGLARSLFDEMVESGL---TPDEKTLTALIKIYGKARWAKD 380
           N LL A+ +A         P LA  LF  M         P   T   LI  Y +AR    
Sbjct: 77  NELLSALARAPPSAACRDVPALAVELFKRMDRCACPEAAPTIYTYNILINCYRRARRPDL 136

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
            L ++ R+       D   YN L++  +  G V++A  LF  M+      P+  +Y++++
Sbjct: 137 GLPVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKAHDLFYKME-EQGIMPNVVTYSSLI 195

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
           N       +D A  +  +M   GV  N M   CLI     +    + VRVF       + 
Sbjct: 196 NGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLV 255

Query: 501 PDDRLCGCLLSVVSLCE 517
           PD   C   ++  +LC+
Sbjct: 256 PDVGNCNSFMT--ALCK 270


>gi|297736720|emb|CBI25756.3| unnamed protein product [Vitis vinifera]
          Length = 201

 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 68/185 (36%), Positives = 107/185 (57%), Gaps = 1/185 (0%)

Query: 424 KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483
           K S  C PD++++++++ IY   G V  A  +   M E G   N+   T LIQC GKA R
Sbjct: 4   KGSGNCMPDSWTFSSLITIYSCSGKVPEAEAMLNAMLEAGFEPNIFVLTSLIQCYGKANR 63

Query: 484 IDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLI 543
            D++VR F   ++  + PDDR CGC+L+V++     E++GK+I C+ +ANPKL   + L+
Sbjct: 64  TDEVVRTFDRLLELDITPDDRFCGCMLNVMTQ-SPKEELGKLIDCIDKANPKLGNVVKLL 122

Query: 544 EDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYP 603
            +   G    ++E   +      D ++ +CNCLID+C N NL E+A EL  LG    +Y 
Sbjct: 123 LEEQNGEGTFRKEASELFDSISADVKKAYCNCLIDLCVNLNLLEKACELFDLGLTLEIYI 182

Query: 604 GLHNK 608
            +H++
Sbjct: 183 DIHHQ 187



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/168 (22%), Positives = 84/168 (50%), Gaps = 4/168 (2%)

Query: 254 MPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRY 313
           MPD  T+S+++ +Y+ SGKV E  ++    + +G++P+    + L + +G++   D +  
Sbjct: 10  MPDSWTFSSLITIYSCSGKVPEAEAMLNAMLEAGFEPNIFVLTSLIQCYGKANRTDEVVR 69

Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYG 373
               +  L + P+      +L  M ++ K  L + L D + ++           L +  G
Sbjct: 70  TFDRLLELDITPDDRFCGCMLNVMTQSPKEELGK-LIDCIDKANPKLGNVVKLLLEEQNG 128

Query: 374 KARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFE 421
           +  + K+A EL++ +  +   +     N L+++C ++ L+E+A  LF+
Sbjct: 129 EGTFRKEASELFDSISAD---VKKAYCNCLIDLCVNLNLLEKACELFD 173



 Score = 42.4 bits (98), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 42/76 (55%)

Query: 315 LQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK 374
           ++E  S    P+   +++L+     +GK   A ++ + M+E+G  P+   LT+LI+ YGK
Sbjct: 1   MKEKGSGNCMPDSWTFSSLITIYSCSGKVPEAEAMLNAMLEAGFEPNIFVLTSLIQCYGK 60

Query: 375 ARWAKDALELWERMRE 390
           A    + +  ++R+ E
Sbjct: 61  ANRTDEVVRTFDRLLE 76


>gi|297736854|emb|CBI26055.3| unnamed protein product [Vitis vinifera]
          Length = 653

 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 85/293 (29%), Positives = 148/293 (50%), Gaps = 4/293 (1%)

Query: 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
            +EA   FE M      P+ VT+S+++D   K G+V++  SLYE+ +  G  P  I ++ 
Sbjct: 210 LEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTS 269

Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
           L + F + G  +    + +EM   G  P+L + NT ++ + KAG+    R+LF E+   G
Sbjct: 270 LIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHG 329

Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417
             PD ++ + LI    KA  A +  EL+  M+E    +D   YN +++     G V +A 
Sbjct: 330 FIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAY 389

Query: 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
           +L E+MK+  +  P   +Y ++++       +D A  LFEE    G+ +NV+  + LI  
Sbjct: 390 QLLEEMKVKGH-PPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDG 448

Query: 478 LGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQ 530
            GK  RID+   +    + +G+ P+     CLL  +     +E++ + + C Q
Sbjct: 449 FGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALV---KAEEINEALICFQ 498



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 144/312 (46%), Gaps = 3/312 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D  +YS +I    +  L +E  E F  M + G + D   Y+A++D + KSGKV +   L 
Sbjct: 333 DARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLL 392

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
           E     G  P  + +  +     +    D    + +E KS G++ N+VVY++L++  GK 
Sbjct: 393 EEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKV 452

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G+   A  + +E+++ GLTP+  T   L+    KA    +AL  ++ M++ K P + I Y
Sbjct: 453 GRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITY 512

Query: 401 NTLLNMCADIGLVEEAERLFEDM-KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           + L+N    +    +A   +++M KL    KP+  +YT M++     GN+  A  LF   
Sbjct: 513 SILINGLCRVRKFNKAFVFWQEMQKLG--LKPNTITYTTMISGLAKAGNILEASGLFSRF 570

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETS 519
              G   +      +I+ L  A +  D   +F  +  +G     + C  LL  +   E  
Sbjct: 571 KANGGIPDSASYNAMIEGLSSANKAMDAYALFEETRLKGCNIHTKTCVVLLDALHKAECL 630

Query: 520 EDVGKVITCLQQ 531
           E    V   L++
Sbjct: 631 EQAAIVGAVLKE 642



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 78/274 (28%), Positives = 129/274 (47%), Gaps = 1/274 (0%)

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
           LD   Y+ +I    +    ++A +  E M   G  P  VTY +++D  AK  +++E   L
Sbjct: 367 LDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYML 426

Query: 280 YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
           +E   ++G K + + +S L   FG+ G  D    +++E+   G+ PN+  +N LL+A+ K
Sbjct: 427 FEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVK 486

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
           A +   A   F  M +    P++ T + LI    + R    A   W+ M++     + I 
Sbjct: 487 AEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTIT 546

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           Y T+++  A  G + EA  LF   K ++   PD+ SY AM+    S     +A  LFEE 
Sbjct: 547 YTTMISGLAKAGNILEASGLFSRFK-ANGGIPDSASYNAMIEGLSSANKAMDAYALFEET 605

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGV 493
              G  I+   C  L+  L KA  ++    V  V
Sbjct: 606 RLKGCNIHTKTCVVLLDALHKAECLEQAAIVGAV 639



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 135/311 (43%), Gaps = 6/311 (1%)

Query: 192 VTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKT 251
           V  K+ R     +L EQL      N        Y+T+I        FDEA    ER    
Sbjct: 64  VLCKANRLDEAVELFEQLEQ----NRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAK 119

Query: 252 GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGI 311
           G +P  + Y+ IL    K  +VEE L ++E  +     P+   +++L  M    G  +  
Sbjct: 120 GSIPSVIAYNCILTCLGKKRRVEEALRIFEE-MKRDAVPNVPTYNILIDMLCREGKLNAA 178

Query: 312 RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371
             +  +M+  G+ PN++  N +++ + KA K   A S+F+ M +   TP+  T ++LI  
Sbjct: 179 LEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDG 238

Query: 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
            GK     DA  L+E+M +       I+Y +L+      G  E+  +++++M +   C P
Sbjct: 239 LGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEM-VHTGCSP 297

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           D       ++     G  +    LF E++  G   +    + LI  L KA   ++   +F
Sbjct: 298 DLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELF 357

Query: 492 GVSIDRGVKPD 502
               ++G   D
Sbjct: 358 YAMKEQGCVLD 368



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 71/152 (46%), Gaps = 17/152 (11%)

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M  SG  P       L+    K+R  ++A ++ + MR+ K+   F  Y  L+     +GL
Sbjct: 1   MSLSGFGPSSNISIELVANCVKSRKLREAFDIIQTMRKFKFRPAFSAYTILI---GKVGL 57

Query: 413 -------------VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
                        ++EA  LFE ++ +    P  Y+Y  M+  YGS G  D A  L E  
Sbjct: 58  MLLFPWVLCKANRLDEAVELFEQLEQNRKV-PCAYAYNTMIMGYGSAGKFDEAYGLLERQ 116

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
              G   +V+   C++ CLGK RR+++ +R+F
Sbjct: 117 KAKGSIPSVIAYNCILTCLGKKRRVEEALRIF 148



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/224 (20%), Positives = 97/224 (43%), Gaps = 5/224 (2%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ--LANEMVSNEIELDNITYS 226
           ++Y  F   KS N   +  + Y+  +    FG+  ++ E   +  E++   +  +  T++
Sbjct: 422 EAYMLFEEAKS-NGIKLNVVVYSSLIDG--FGKVGRIDEAYLIMEELMQKGLTPNVYTWN 478

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
            ++    +    +EA+  F+ M      P+++TYS +++   +  K  +    ++     
Sbjct: 479 CLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKL 538

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G KP+ I ++ +     ++G+      +    K+ G  P+   YN ++E +  A K   A
Sbjct: 539 GLKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGIPDSASYNAMIEGLSSANKAMDA 598

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
            +LF+E    G     KT   L+    KA   + A  +   ++E
Sbjct: 599 YALFEETRLKGCNIHTKTCVVLLDALHKAECLEQAAIVGAVLKE 642


>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
          Length = 691

 Score =  135 bits (340), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 96/350 (27%), Positives = 175/350 (50%), Gaps = 6/350 (1%)

Query: 156 NALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSL--RFGRQFQLIEQLANEM 213
           NA+L+  S      +  FF+ + S  + P     YN+ +++L  R  R+  L   +  +M
Sbjct: 120 NAVLLALSDASLTSARRFFDSMLSDGVAP-NVYTYNILIRALCGRGHRKEAL--SILRDM 176

Query: 214 VSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKV 273
                  + +TY+T++    R    D A      M   GL P+ VT++++++   K+GK+
Sbjct: 177 RGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMLDGGLKPNLVTFNSMVNGMCKAGKM 236

Query: 274 EEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTL 333
           E+   +++  +  G  PD ++++ L   + ++G       V  EM   G+ P++V + +L
Sbjct: 237 EDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSL 296

Query: 334 LEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKW 393
           +  M KAG    A +L  +M E GL  +E T TALI  + K  +  DAL     MR+ + 
Sbjct: 297 IHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMRQCRI 356

Query: 394 PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAI 453
               + YN L+N    +G ++EA  L  +M+     KPD  +Y+ +++ Y    +  +A 
Sbjct: 357 KPSVVCYNALINGYCMVGRMDEARELLHEMEAKGL-KPDVVTYSTIISAYCKNCDTHSAF 415

Query: 454 ELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
           EL ++M E GV  + +  + LI+ L + +R+ D   +F   I  G++PD+
Sbjct: 416 ELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDE 465



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 79/274 (28%), Positives = 145/274 (52%), Gaps = 3/274 (1%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
           +EM+   +  D ++Y+T++    +     EA+  F  M + G+MPD VT+++++ V  K+
Sbjct: 244 DEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKA 303

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
           G +E  ++L  +    G + + + F+ L   F + G  D     ++ M+   ++P++V Y
Sbjct: 304 GNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCY 363

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
           N L+      G+   AR L  EM   GL PD  T + +I  Y K      A EL ++M E
Sbjct: 364 NALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLE 423

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDM-KLSDYCKPDNYSYTAMLNIYGSGGNV 449
                D I Y++L+ +  +   + +A  LF++M KL    +PD ++YT++++ +   GNV
Sbjct: 424 KGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLG--LQPDEFTYTSLIDGHCKEGNV 481

Query: 450 DNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483
           + A+ L ++M + GV  +V+  + LI  L K+ R
Sbjct: 482 ERALSLHDKMVKAGVLPDVVTYSVLINGLSKSAR 515



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 114/233 (48%), Gaps = 1/233 (0%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  +M    ++++ +T++ +I    +    D+A+     M +  + P  V Y+A+++ Y 
Sbjct: 312 LVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYC 371

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
             G+++E   L     A G KPD + +S +   + ++ D      + Q+M   GV P+ +
Sbjct: 372 MVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAI 431

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            Y++L+  + +  +   A  LF  M++ GL PDE T T+LI  + K    + AL L ++M
Sbjct: 432 TYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVERALSLHDKM 491

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
            +     D + Y+ L+N  +      EA++L   +   +   P N  Y A+++
Sbjct: 492 VKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEEPI-PANTKYDALMH 543



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 131/293 (44%), Gaps = 23/293 (7%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITC-AKRCNLFDEAIEWF 245
            + YN  +       +     +L +EM +  ++ D +TYSTII+   K C+    A E  
Sbjct: 360 VVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDT-HSAFELN 418

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           ++M + G++PD +TYS+++ V  +  ++ +   L++  +  G +PD   ++ L     + 
Sbjct: 419 QQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKE 478

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G+ +    +  +M   GV P++V Y+ L+  + K+ +   A+ L  ++      P     
Sbjct: 479 GNVERALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEEPIPANTKY 538

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
            AL+    KA   K  L L +                    C   GL+ EA+++++ M L
Sbjct: 539 DALMHCCRKAEL-KSVLALLK------------------GFCMK-GLMNEADKVYQSM-L 577

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL 478
                 D   Y+ +++ +   GNV  A+   ++M + G A N      LI+ L
Sbjct: 578 DRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQRGFAPNSTSTISLIRGL 630



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/273 (24%), Positives = 126/273 (46%), Gaps = 18/273 (6%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           +L  +M+   +  D ITYS++I          +A   F+ M K GL PDE TY++++D +
Sbjct: 416 ELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGH 475

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            K G VE  LSL+++ V +G  PD + +SVL     +S      + +L ++      P  
Sbjct: 476 CKEGNVERALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEEPIPAN 535

Query: 328 VVYNTLLEAMGKA---------------GKPGLARSLFDEMVESGLTPDEKTLTALIKIY 372
             Y+ L+    KA               G    A  ++  M++     D    + LI  +
Sbjct: 536 TKYDALMHCCRKAELKSVLALLKGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGH 595

Query: 373 GKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCK-P 431
            +A     AL   ++M +  +  +     +L+    + G+V EA+++ +  +L + C   
Sbjct: 596 CRAGNVMKALSFHKQMLQRGFAPNSTSTISLIRGLFENGMVVEADQVIQ--QLLNCCSLA 653

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
           D  +  A++++  + GNVD  +++   M++ G+
Sbjct: 654 DAEASKALIDLNLNEGNVDAVLDVLHGMAKDGL 686


>gi|302765176|ref|XP_002966009.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
 gi|300166823|gb|EFJ33429.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
          Length = 413

 Score =  135 bits (340), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 90/295 (30%), Positives = 140/295 (47%), Gaps = 1/295 (0%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           +L + M ++   LD  TYS ++    +     +A+E F  M K G MPD V Y+ ++   
Sbjct: 103 RLLHHMTAHAFVLDVFTYSYLMDALGKAGRAAKALEVFSNMQKAGCMPDTVVYNVLISCL 162

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            K GKV+E L L E     G  PD   ++++  +    G Y+        MK     P++
Sbjct: 163 GKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDV 222

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
           V YNTLL  + K  +   A  LFDEM  +   PD  T   LI    KA   +DALE   R
Sbjct: 223 VTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRMEDALEQSAR 282

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           + +     +  +YN L++     G V++   LF+DM +   C PD+ +YT ++  +   G
Sbjct: 283 LVKMGHVPNSYIYNALISGFCRSGQVDKGYELFQDM-IECSCFPDSITYTILVLGFSRRG 341

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           +   A+EL +EM   G    +     LI+ L  A +++D   +F   I +G  PD
Sbjct: 342 HTSMAMELLQEMVREGHTPALATYNVLIRSLSMAGQVEDAYTLFKEMIAKGFNPD 396



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 112/221 (50%), Gaps = 1/221 (0%)

Query: 148 IPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIE 207
           +P   T    + +L+S   ++K+Y FF  +K +   P + + YN  +  L+  R+     
Sbjct: 184 MPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSP-DVVTYNTLLNGLKKLRRTDEAC 242

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
            L +EM +N+   D  T+ T+I    +    ++A+E   R+ K G +P+   Y+A++  +
Sbjct: 243 DLFDEMQANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGHVPNSYIYNALISGF 302

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            +SG+V++   L++  +     PD I +++L   F   G       +LQEM   G  P L
Sbjct: 303 CRSGQVDKGYELFQDMIECSCFPDSITYTILVLGFSRRGHTSMAMELLQEMVREGHTPAL 362

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
             YN L+ ++  AG+   A +LF EM+  G  PD +T +AL
Sbjct: 363 ATYNVLIRSLSMAGQVEDAYTLFKEMIAKGFNPDMQTYSAL 403



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/280 (23%), Positives = 125/280 (44%), Gaps = 1/280 (0%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           +++ T++    + +   +A+  F+ M   GL  D    + ++    + G + +   L   
Sbjct: 48  VSFDTLVIFLCKMSRATDALAVFQEMLGAGLQADVNVCNTLIHCTCRLGMLRQARRLLHH 107

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
             A  +  D   +S L    G++G       V   M+  G  P+ VVYN L+  +GK GK
Sbjct: 108 MTAHAFVLDVFTYSYLMDALGKAGRAAKALEVFSNMQKAGCMPDTVVYNVLISCLGKQGK 167

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
              A  L ++M   G+ PD +T   +I +       + A   +  M+  K   D + YNT
Sbjct: 168 VDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNT 227

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
           LLN    +   +EA  LF++M+ ++ C PD  ++  +++     G +++A+E    + ++
Sbjct: 228 LLNGLKKLRRTDEACDLFDEMQ-ANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKM 286

Query: 463 GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           G   N      LI    ++ ++D    +F   I+    PD
Sbjct: 287 GHVPNSYIYNALISGFCRSGQVDKGYELFQDMIECSCFPD 326



 Score = 99.0 bits (245), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 130/292 (44%), Gaps = 2/292 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTG-LMPDEVTYSAILDVYAKSGKVEEVLSL 279
           D + Y+T+I    +    D A++ F R+ + G   P+ V++  ++    K  +  + L++
Sbjct: 10  DVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDALAV 69

Query: 280 YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
           ++  + +G + D    + L       G     R +L  M +     ++  Y+ L++A+GK
Sbjct: 70  FQEMLGAGLQADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHAFVLDVFTYSYLMDALGK 129

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
           AG+   A  +F  M ++G  PD      LI   GK     +ALEL E M       D   
Sbjct: 130 AGRAAKALEVFSNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRT 189

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           YN ++++ +  G  E+A   F  MK   +  PD  +Y  +LN        D A +LF+EM
Sbjct: 190 YNIVIDVLSSCGRYEKAYSFFGMMKRRKH-SPDVVTYNTLLNGLKKLRRTDEACDLFDEM 248

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
                  ++     LI  L KA R++D +      +  G  P+  +   L+S
Sbjct: 249 QANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGHVPNSYIYNALIS 300



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 104/403 (25%), Positives = 171/403 (42%), Gaps = 22/403 (5%)

Query: 255 PDEVTYSAILDVYAKSGKVEEVLSLYERGVASG-WKPDPIAFSVLGKMFGESGDYDGIRY 313
           PD V Y+ ++  Y K+G  +  L ++ R    G  KP+ ++F  L     +         
Sbjct: 9   PDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDALA 68

Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYG 373
           V QEM   G+Q ++ V NTL+    + G    AR L   M       D  T + L+   G
Sbjct: 69  VFQEMLGAGLQADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHAFVLDVFTYSYLMDALG 128

Query: 374 KARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDN 433
           KA  A  ALE++  M++     D ++YN L++     G V+EA  L EDM       PD 
Sbjct: 129 KAGRAAKALEVFSNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGI-MPDC 187

Query: 434 YSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGV 493
            +Y  ++++  S G  + A   F  M     + +V+    L+  L K RR D+   +F  
Sbjct: 188 RTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDE 247

Query: 494 SIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENI 553
                  PD      L +  +L +T    G++   L+Q+  +LV   ++   NS  +  +
Sbjct: 248 MQANKCMPD------LTTFGTLIDTLAKAGRMEDALEQS-ARLVKMGHV--PNSYIYNAL 298

Query: 554 KEEF---RNVIKDTEVDARRPFCNCLIDICRNRNL----NERAHELLYLGTLYGLYPGLH 606
              F     V K  E+      C+C  D      L    + R H  + +  L  +    H
Sbjct: 299 ISGFCRSGQVDKGYELFQDMIECSCFPDSITYTILVLGFSRRGHTSMAMELLQEMVREGH 358

Query: 607 NKTLDEWSLDVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQL 649
              L  +++ +RSLS+ A Q    E  +TL K ++ +   P +
Sbjct: 359 TPALATYNVLIRSLSM-AGQV---EDAYTLFKEMIAKGFNPDM 397



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 96/217 (44%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN+ +  L    +++        M   +   D +TY+T++   K+    DEA + F+ M 
Sbjct: 190 YNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQ 249

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
               MPD  T+  ++D  AK+G++E+ L    R V  G  P+   ++ L   F  SG  D
Sbjct: 250 ANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGHVPNSYIYNALISGFCRSGQVD 309

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               + Q+M      P+ + Y  L+    + G   +A  L  EMV  G TP   T   LI
Sbjct: 310 KGYELFQDMIECSCFPDSITYTILVLGFSRRGHTSMAMELLQEMVREGHTPALATYNVLI 369

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
           +    A   +DA  L++ M    +  D   Y+ L N+
Sbjct: 370 RSLSMAGQVEDAYTLFKEMIAKGFNPDMQTYSALPNL 406


>gi|242032435|ref|XP_002463612.1| hypothetical protein SORBIDRAFT_01g002930 [Sorghum bicolor]
 gi|241917466|gb|EER90610.1| hypothetical protein SORBIDRAFT_01g002930 [Sorghum bicolor]
          Length = 638

 Score =  135 bits (340), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 113/470 (24%), Positives = 207/470 (44%), Gaps = 9/470 (1%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           +T+ Y   + +         + +L +EM       D   Y  ++    R     EA+   
Sbjct: 55  DTVSYRYIVDAFASAGNLSRVAELFSEMAVMGNTADASAYLGLMEAHTRVGATAEAVAVL 114

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
            +M   G  P   TY  +LD+Y + G+ + V  L+ R + +   PD   ++VL +++G+ 
Sbjct: 115 RQMQADGCAPTAATYRVLLDLYGRQGRFDGVRELF-REMRTAVPPDTATYNVLFRVYGDG 173

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G +  +  +  +M   GV+P++V    ++ A G+ G    AR + + M   G+ P     
Sbjct: 174 GFFKEVVELFHDMLETGVEPDMVTCENVMAACGRGGLHEDAREVLEYMTREGMVPTADAY 233

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
           T L++  G A   ++A   +  M E         YNTL    A  GL +EAE +F  M  
Sbjct: 234 TGLVEALGHAAMYEEAYVAFNMMTEIGSLPTLETYNTLAFAYARGGLFQEAEAIFSRMSN 293

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
           +   + +  S+ A++  Y  G  +D+A++ + EM +     +      ++     A  ID
Sbjct: 294 NAGIQKNKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCIAGVID 353

Query: 486 DLVRVFGVSIDRGVKPDDRLCGC-LLSVVSLCETSEDVGKVITCLQ--QANPKLVAFLNL 542
           +    F   +   V     +  C +LS+ +  +   D   ++  ++  +A+       +L
Sbjct: 354 ESKEQFE-ELQSSVTLPSIIAYCMMLSLYARNDRWADAYDMLEEMKTNRASSTHQVIASL 412

Query: 543 IE---DNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLY 599
           I+   D+S+ ++ ++    N   +   D    F N L+D+        RA  +L     +
Sbjct: 413 IKGEYDDSSNWQMVEYALENSTMEG-CDYSLRFFNALLDVLWWFGQKGRAARVLDQAVQF 471

Query: 600 GLYPGLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQL 649
           GL+P L+  T   WSLDV  +SVG A  A+  W+  L   ++ +E LPQL
Sbjct: 472 GLFPELYRDTKLVWSLDVHRMSVGGALVAVSVWLNKLYDRLVEDEDLPQL 521



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 105/247 (42%), Gaps = 2/247 (0%)

Query: 255 PDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYV 314
           PD  TY+ +L   A     ++   L    + +G  PD +++  +   F  +G+   +  +
Sbjct: 19  PDLTTYNTLLAAAAVRSLADQSEMLLRTMLEAGVSPDTVSYRYIVDAFASAGNLSRVAEL 78

Query: 315 LQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK 374
             EM  +G   +   Y  L+EA  + G    A ++  +M   G  P   T   L+ +YG+
Sbjct: 79  FSEMAVMGNTADASAYLGLMEAHTRVGATAEAVAVLRQMQADGCAPTAATYRVLLDLYGR 138

Query: 375 ARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNY 434
                   EL+  MR    P D   YN L  +  D G  +E   LF DM L    +PD  
Sbjct: 139 QGRFDGVRELFREMR-TAVPPDTATYNVLFRVYGDGGFFKEVVELFHDM-LETGVEPDMV 196

Query: 435 SYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVS 494
           +   ++   G GG  ++A E+ E M+  G+       T L++ LG A   ++    F + 
Sbjct: 197 TCENVMAACGRGGLHEDAREVLEYMTREGMVPTADAYTGLVEALGHAAMYEEAYVAFNMM 256

Query: 495 IDRGVKP 501
            + G  P
Sbjct: 257 TEIGSLP 263



 Score = 72.8 bits (177), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 54/242 (22%), Positives = 107/242 (44%), Gaps = 1/242 (0%)

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           P +T  YNV  +    G  F+ + +L ++M+   +E D +T   ++    R  L ++A E
Sbjct: 157 PPDTATYNVLFRVYGDGGFFKEVVELFHDMLETGVEPDMVTCENVMAACGRGGLHEDARE 216

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
             E M + G++P    Y+ +++    +   EE    +      G  P    ++ L   + 
Sbjct: 217 VLEYMTREGMVPTADAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTLETYNTLAFAYA 276

Query: 304 ESGDYDGIRYVLQEMKS-LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
             G +     +   M +  G+Q N   ++ L+EA  +  +   A   + EM +S   PDE
Sbjct: 277 RGGLFQEAEAIFSRMSNNAGIQKNKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDE 336

Query: 363 KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED 422
           ++L  ++  Y  A    ++ E +E ++ +      I Y  +L++ A      +A  + E+
Sbjct: 337 RSLEGVLNAYCIAGVIDESKEQFEELQSSVTLPSIIAYCMMLSLYARNDRWADAYDMLEE 396

Query: 423 MK 424
           MK
Sbjct: 397 MK 398



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 53/247 (21%), Positives = 101/247 (40%), Gaps = 40/247 (16%)

Query: 161 LNSLKFWQKSYFFFNWIKSQNLFP-METIFYNVTMKSLRFGRQFQLIEQLANEMVSNE-I 218
           L     ++++Y  FN +      P +ET  YN    +   G  FQ  E + + M +N  I
Sbjct: 240 LGHAAMYEEAYVAFNMMTEIGSLPTLET--YNTLAFAYARGGLFQEAEAIFSRMSNNAGI 297

Query: 219 ELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS 278
           + +  ++  +I    +    D+A++ +  M K+   PDE +   +L+ Y  +G ++E   
Sbjct: 298 QKNKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCIAGVIDESKE 357

Query: 279 LYERGVASGWKPDPIAFSVLGKMFGES------------------------------GDY 308
            +E   +S   P  IA+ ++  ++  +                              G+Y
Sbjct: 358 QFEELQSSVTLPSIIAYCMMLSLYARNDRWADAYDMLEEMKTNRASSTHQVIASLIKGEY 417

Query: 309 DG------IRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
           D       + Y L+     G   +L  +N LL+ +   G+ G A  + D+ V+ GL P+ 
Sbjct: 418 DDSSNWQMVEYALENSTMEGCDYSLRFFNALLDVLWWFGQKGRAARVLDQAVQFGLFPEL 477

Query: 363 KTLTALI 369
              T L+
Sbjct: 478 YRDTKLV 484


>gi|229914885|gb|ACQ90610.1| putative PPR repeat protein [Eutrema halophilum]
          Length = 1023

 Score =  135 bits (340), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 100/391 (25%), Positives = 185/391 (47%), Gaps = 2/391 (0%)

Query: 112 RSTYSYNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTRENALLILNSLKFWQKSY 171
           R  Y  N  +R++ L   +L DCD  +  +      +P     +    +L     ++++ 
Sbjct: 24  RMYYDANRILREMVLSKAELKDCDVFDVLWSTRNVCVPGFGVFDALFSVLIEEDMFEEAL 83

Query: 172 FFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITC 231
             F+ +K   +FP       +  K  R G+    +++   +M+    +    TY+ +I C
Sbjct: 84  QCFSKMKRCRVFPKTRSCNGLLHKFARLGKT-DGMKRFFKDMIGAGSKPTVFTYNIMIDC 142

Query: 232 AKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291
             +    + A   FE M   GL+PD VTY++++D Y K G++++ +  +E   +   +PD
Sbjct: 143 MCKEGDIEAASGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPD 202

Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
            I ++ L   F + G         +EMK  G++PN+V Y+TL++A  K      A   + 
Sbjct: 203 VITYNTLINCFCKFGKLPKGLEFFREMKQSGLKPNVVSYSTLVDAFCKEDMMQQALKFYV 262

Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411
           +M   GL P+E T T+L+  Y K     DA  L + M +     + + Y  L++   D+ 
Sbjct: 263 DMRRLGLVPNEHTYTSLVDAYCKIGNLSDAFRLADEMSQVGVEWNVVTYTALIDGLCDVE 322

Query: 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC 471
            ++EAE LF  M ++    P+  SYTA+++ +    N+D A+EL +EM   G+  +++  
Sbjct: 323 RIKEAEELFGKM-VTAGVIPNLASYTALIHGFVKAKNMDRALELLDEMKGRGIKPDLLLY 381

Query: 472 TCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
              I  L    +I+    V     ++G+K +
Sbjct: 382 GTFIWSLCGLEKIEAAKVVMNEMQEKGIKAN 412



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 103/381 (27%), Positives = 184/381 (48%), Gaps = 17/381 (4%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLA--NEMVSNEIELDNITYSTIIT 230
            F  +K + L P +T+ YN  +    +G+  +L + +    EM S   E D ITY+T+I 
Sbjct: 155 LFEEMKFRGLIP-DTVTYNSMIDG--YGKVGRLDDTVYFFEEMKSMSCEPDVITYNTLIN 211

Query: 231 CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
           C  +     + +E+F  M ++GL P+ V+YS ++D + K   +++ L  Y      G  P
Sbjct: 212 CFCKFGKLPKGLEFFREMKQSGLKPNVVSYSTLVDAFCKEDMMQQALKFYVDMRRLGLVP 271

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
           +   ++ L   + + G+      +  EM  +GV+ N+V Y  L++ +    +   A  LF
Sbjct: 272 NEHTYTSLVDAYCKIGNLSDAFRLADEMSQVGVEWNVVTYTALIDGLCDVERIKEAEELF 331

Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
            +MV +G+ P+  + TALI  + KA+    ALEL + M+      D +LY T +     +
Sbjct: 332 GKMVTAGVIPNLASYTALIHGFVKAKNMDRALELLDEMKGRGIKPDLLLYGTFIWSLCGL 391

Query: 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG 470
             +E A+ +  +M+     K + + YT +++ Y    N    + L EEM EL + +  + 
Sbjct: 392 EKIEAAKVVMNEMQEKGI-KANTFIYTTLMDAYFKSENPSEGLHLLEEMLELDIEVTAVT 450

Query: 471 CTCLIQCLGKARRIDDLVRVFG-VSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCL 529
              LI  L K + +   +  FG +S D G++ +  +   ++    LC+  ED  +  T L
Sbjct: 451 FCVLIDGLCKNKLVSKAIDYFGRISNDFGLQANAAIYTAMID--GLCK--EDQVEAATTL 506

Query: 530 --QQANPKLV----AFLNLIE 544
             Q A   LV    A+ +LI+
Sbjct: 507 FEQMAQKGLVPDRTAYTSLID 527



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 72/298 (24%), Positives = 137/298 (45%), Gaps = 3/298 (1%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           Q++  F+  ++   L P E  + ++     + G       +LA+EM    +E + +TY+ 
Sbjct: 255 QQALKFYVDMRRLGLVPNEHTYTSLVDAYCKIGNLSDAF-RLADEMSQVGVEWNVVTYTA 313

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           +I          EA E F +M   G++P+  +Y+A++  + K+  ++  L L +     G
Sbjct: 314 LIDGLCDVERIKEAEELFGKMVTAGVIPNLASYTALIHGFVKAKNMDRALELLDEMKGRG 373

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
            KPD + +             +  + V+ EM+  G++ N  +Y TL++A  K+  P    
Sbjct: 374 IKPDLLLYGTFIWSLCGLEKIEAAKVVMNEMQEKGIKANTFIYTTLMDAYFKSENPSEGL 433

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN-KWPMDFILYNTLLNM 406
            L +EM+E  +     T   LI    K +    A++ + R+  +     +  +Y  +++ 
Sbjct: 434 HLLEEMLELDIEVTAVTFCVLIDGLCKNKLVSKAIDYFGRISNDFGLQANAAIYTAMIDG 493

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
                 VE A  LFE M       PD  +YT++++     GNV  A+ L ++M+E+GV
Sbjct: 494 LCKEDQVEAATTLFEQMAQKGLV-PDRTAYTSLIDGKLKQGNVVQALALRDKMAEIGV 550


>gi|119638441|gb|ABL85032.1| auxin efflux carrier [Brachypodium sylvaticum]
          Length = 895

 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 108/439 (24%), Positives = 203/439 (46%), Gaps = 13/439 (2%)

Query: 175 NWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKR 234
            +++   + P +   Y+  +++    R F   +++  EM   +  ++ +TY+ +I+   R
Sbjct: 232 GFMEGAGILP-DVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCR 290

Query: 235 CNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIA 294
               +EA  + E M   GL PD  TY A+++   K  +++E  +L +    SG KP+ + 
Sbjct: 291 SGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVV 350

Query: 295 FSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMV 354
           +  L   F + G       +L+EM S GVQPN ++Y+ L+  + K G+ G A  L  EM+
Sbjct: 351 YGTLVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMI 410

Query: 355 ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
           + GL PD  T   L++ + +      A EL   MR +    +   Y  ++N     G  +
Sbjct: 411 KVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMINGLCQNGESK 470

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
           EA  L E+M +S+  KP+ + Y  ++  +   GN+  A E  E+M++  V  ++     L
Sbjct: 471 EAGNLLEEM-ISEGLKPNAFMYAPLIIGHSKEGNISLACEALEKMTKANVHPDLFCYNSL 529

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQA-- 532
           I+ L    R+++    +     RG+ PD+     L+     C+T  ++ K    L+Q   
Sbjct: 530 IKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIH--GYCKTG-NLEKADQLLRQMLN 586

Query: 533 ---NPKLVAFLNLIED--NSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNE 587
               P    + +L+E    S  +E +    ++++   +      +   + ++ R+ N+ E
Sbjct: 587 SGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENM-E 645

Query: 588 RAHELLYLGTLYGLYPGLH 606
            A  +L      GL P LH
Sbjct: 646 VAFMVLTEVEKNGLVPDLH 664



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 87/378 (23%), Positives = 176/378 (46%), Gaps = 4/378 (1%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           ++++ F   +    L P +   Y   M  L  G + +  + L +EM  + ++ + + Y T
Sbjct: 295 EEAFGFKEEMVDYGLSP-DAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGT 353

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           ++    +     EA +  + M   G+ P+++ Y  ++    K G++     L +  +  G
Sbjct: 354 LVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVG 413

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
            +PD   ++ L +   +  D DG   +L EM++ G+ PN+  Y  ++  + + G+   A 
Sbjct: 414 LRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAG 473

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
           +L +EM+  GL P+      LI  + K      A E  E+M +     D   YN+L+   
Sbjct: 474 NLLEEMISEGLKPNAFMYAPLIIGHSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGL 533

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
           + +G +EEAE  +  ++      PD ++Y+ +++ Y   GN++ A +L  +M   G+  N
Sbjct: 534 STVGRMEEAEEYYAQVQKRGLV-PDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPN 592

Query: 468 VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVIT 527
               T L++   K+   + +  +    +  G KPD+ + G ++  +S  E  E    V+T
Sbjct: 593 ADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLT 652

Query: 528 CLQQAN--PKLVAFLNLI 543
            +++    P L  + +LI
Sbjct: 653 EVEKNGLVPDLHIYSSLI 670



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 136/267 (50%), Gaps = 6/267 (2%)

Query: 212 EMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG 271
           +M    +  D   Y+++I         +EA E++ ++ K GL+PDE TYS ++  Y K+G
Sbjct: 513 KMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTG 572

Query: 272 KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYN 331
            +E+   L  + + SG KP+   ++ L + + +S DY+ +  +LQ M   G +P+  +Y 
Sbjct: 573 NLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIYG 632

Query: 332 TLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN 391
            ++  + ++    +A  +  E+ ++GL PD    ++LI    K    + A+ L + M + 
Sbjct: 633 IVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVGLLDEMAKE 692

Query: 392 KWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDN 451
                 + YN L++     G +  A  +F+ + L+    P+  +YTA+++     G++ +
Sbjct: 693 GLEPGIVCYNALIDGFCRSGDISRARNVFDSI-LAKGLVPNCVTYTALIDGNCKNGDITD 751

Query: 452 AIELFEEMSELGVA-----INVMGCTC 473
           A +L++EM + G+A      NV+   C
Sbjct: 752 AFDLYKEMLDRGIAPDAFVYNVLATGC 778



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 87/347 (25%), Positives = 152/347 (43%), Gaps = 40/347 (11%)

Query: 181 NLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDE 240
           N+ P +   YN  +K L    + +  E+   ++    +  D  TYS +I    +    ++
Sbjct: 518 NVHP-DLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEK 576

Query: 241 AIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD--------- 291
           A +   +M  +GL P+  TY+ +L+ Y KS   E+V S+ +  + SG KPD         
Sbjct: 577 ADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIYGIVIR 636

Query: 292 --------PIAFSVLGKM------------------FGESGDYDGIRYVLQEMKSLGVQP 325
                    +AF VL ++                    +  D +    +L EM   G++P
Sbjct: 637 NLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVGLLDEMAKEGLEP 696

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
            +V YN L++   ++G    AR++FD ++  GL P+  T TALI    K     DA +L+
Sbjct: 697 GIVCYNALIDGFCRSGDISRARNVFDSILAKGLVPNCVTYTALIDGNCKNGDITDAFDLY 756

Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYS-YTAMLNIYG 444
           + M +     D  +YN L   C+D   +E+A  L E+M    Y    N S +  +++ + 
Sbjct: 757 KEMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRGYA---NVSLFNTLVHGFC 813

Query: 445 SGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
             G +    +L   M +  +  N      ++   GKA ++ +  RVF
Sbjct: 814 KRGKLQETEKLLHVMMDREIVPNAQTVEKVVSEFGKAGKLGEAHRVF 860



 Score = 98.2 bits (243), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/333 (22%), Positives = 150/333 (45%), Gaps = 2/333 (0%)

Query: 170 SYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTII 229
           ++   N +++  + P     Y + +  L    + +    L  EM+S  ++ +   Y+ +I
Sbjct: 437 AFELLNEMRNSGILP-NVYSYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLI 495

Query: 230 TCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWK 289
               +      A E  E+M K  + PD   Y++++   +  G++EE    Y +    G  
Sbjct: 496 IGHSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLV 555

Query: 290 PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSL 349
           PD   +S L   + ++G+ +    +L++M + G++PN   Y  LLE   K+       S+
Sbjct: 556 PDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSI 615

Query: 350 FDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCAD 409
              M+ SG  PD      +I+   ++   + A  +   + +N    D  +Y++L++    
Sbjct: 616 LQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCK 675

Query: 410 IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVM 469
           I  +E+A  L ++M   +  +P    Y A+++ +   G++  A  +F+ +   G+  N +
Sbjct: 676 IADMEKAVGLLDEMA-KEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLVPNCV 734

Query: 470 GCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
             T LI    K   I D   ++   +DRG+ PD
Sbjct: 735 TYTALIDGNCKNGDITDAFDLYKEMLDRGIAPD 767



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 94/403 (23%), Positives = 161/403 (39%), Gaps = 57/403 (14%)

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M   GL P     + +L    ++  +E +  L      +G  PD   +S   +   ++ D
Sbjct: 199 MADLGLAPTRRCCNGLLKDLLRADAMELLWKLKGFMEGAGILPDVYTYSTFIEAHCKARD 258

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
           +D  + V +EM+      N V YN ++  + ++G    A    +EMV+ GL+PD  T  A
Sbjct: 259 FDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGA 318

Query: 368 LIKIYGKARWAKDALELWER--------------------MRENKWPMDF---------- 397
           L+    K    K+A  L +                     M+E K    F          
Sbjct: 319 LMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDGFMKEGKTAEAFDILKEMISAG 378

Query: 398 -----ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNA 452
                I+Y+ L+     IG +  A +L ++M +    +PD ++Y  ++  +    + D A
Sbjct: 379 VQPNKIMYDNLIRGLCKIGQLGRASKLLKEM-IKVGLRPDTFTYNPLMQGHFQQHDKDGA 437

Query: 453 IELFEEMSELGVAINVMGCTCLIQCL---GKARRIDDLVRVFGVSIDRGVKPDDRLCGCL 509
            EL  EM   G+  NV     +I  L   G+++   +L+      I  G+KP+  +   L
Sbjct: 438 FELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAGNLLEEM---ISEGLKPNAFMYAPL 494

Query: 510 L-------SVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNST--GFENIKEEFRNV 560
           +       ++   CE  E + K        +P L  + +LI+  ST    E  +E +  V
Sbjct: 495 IIGHSKEGNISLACEALEKMTKA-----NVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQV 549

Query: 561 IKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYP 603
            K   V     +   +   C+  NL E+A +LL      GL P
Sbjct: 550 QKRGLVPDEFTYSGLIHGYCKTGNL-EKADQLLRQMLNSGLKP 591



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 96/214 (44%), Gaps = 3/214 (1%)

Query: 290 PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSL 349
           P      VL   + ++G       V+  M  LG+ P     N LL+ + +A    L   L
Sbjct: 171 PSTAVLDVLVDTYKKTGSVRNAAQVVLMMADLGLAPTRRCCNGLLKDLLRADAMELLWKL 230

Query: 350 FDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCAD 409
              M  +G+ PD  T +  I+ + KAR    A +++E MR     M+ + YN +++    
Sbjct: 231 KGFMEGAGILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCR 290

Query: 410 IGLVEEAERLFEDMKLSDY-CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINV 468
            G VEEA    E+M   DY   PD ++Y A++N    G  +  A  L +EMS  G+  N+
Sbjct: 291 SGAVEEAFGFKEEM--VDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNI 348

Query: 469 MGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           +    L+    K  +  +   +    I  GV+P+
Sbjct: 349 VVYGTLVDGFMKEGKTAEAFDILKEMISAGVQPN 382


>gi|356556194|ref|XP_003546411.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Glycine max]
          Length = 829

 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 100/385 (25%), Positives = 179/385 (46%), Gaps = 12/385 (3%)

Query: 142 LRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSL-RFG 200
           +RA T I H   R            ++++   F  +K   L P   + YNV +    + G
Sbjct: 215 VRAYTTILHSYARTGK---------YKRAIDLFGKMKEIGLDPT-LVTYNVMLDVYGKMG 264

Query: 201 RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTY 260
           R +  I +L +EM S  +ELD  T ST+I+   R  + DEA ++   +   G  P  VTY
Sbjct: 265 RSWDRILELLDEMRSKGLELDEFTCSTVISACGREGMLDEARKFLAELKFNGYKPGTVTY 324

Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
           +++L V+ K+G   E LS+ +    +   PD + ++ L   +  +G  D    V+  M S
Sbjct: 325 NSMLQVFGKAGIYTEALSILKEMEDNNCPPDSVTYNELAATYVRAGFLDEGMAVIDTMTS 384

Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380
            GV PN + Y T+++A GKAG+   A  LF  M + G  P+  T  +++ + GK    +D
Sbjct: 385 KGVMPNAITYTTVIDAYGKAGREDDALRLFSLMKDLGCAPNVYTYNSVLAMLGKKSRTED 444

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
            +++   M+ N    +   +NT+L +C++ G      ++  +MK   + +PD  ++  ++
Sbjct: 445 VIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVLREMKNCGF-EPDKDTFNTLI 503

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
           + Y   G+  ++ +++ EM + G    V     L+  L +         V      +G K
Sbjct: 504 SAYARCGSEVDSAKMYGEMVKSGFTPCVTTYNALLNALARRGDWKAAESVIQDMRTKGFK 563

Query: 501 PDDRLCGCLLSVVSLCETSEDVGKV 525
           P++     LL   S     + + KV
Sbjct: 564 PNENSYSLLLHCYSKAGNVKGIEKV 588



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 93/364 (25%), Positives = 163/364 (44%), Gaps = 6/364 (1%)

Query: 167 WQKSYFFFNW----IKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDN 222
           W+++   F W      S     ++     + ++ L    Q  +  +L + +   +  LD 
Sbjct: 156 WERALLLFEWGWLHFGSDQNLRLDNQVVELMVRILGRESQHSIASKLFDLIPVEKYSLDV 215

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKV-EEVLSLYE 281
             Y+TI+    R   +  AI+ F +M + GL P  VTY+ +LDVY K G+  + +L L +
Sbjct: 216 RAYTTILHSYARTGKYKRAIDLFGKMKEIGLDPTLVTYNVMLDVYGKMGRSWDRILELLD 275

Query: 282 RGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG 341
              + G + D    S +    G  G  D  R  L E+K  G +P  V YN++L+  GKAG
Sbjct: 276 EMRSKGLELDEFTCSTVISACGREGMLDEARKFLAELKFNGYKPGTVTYNSMLQVFGKAG 335

Query: 342 KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYN 401
               A S+  EM ++   PD  T   L   Y +A +  + + + + M       + I Y 
Sbjct: 336 IYTEALSILKEMEDNNCPPDSVTYNELAATYVRAGFLDEGMAVIDTMTSKGVMPNAITYT 395

Query: 402 TLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461
           T+++     G  ++A RLF  MK    C P+ Y+Y ++L + G     ++ I++  EM  
Sbjct: 396 TVIDAYGKAGREDDALRLFSLMK-DLGCAPNVYTYNSVLAMLGKKSRTEDVIKVLCEMKL 454

Query: 462 LGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSED 521
            G A N      ++    +  + + + +V     + G +PD      L+S  + C +  D
Sbjct: 455 NGCAPNRATWNTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKDTFNTLISAYARCGSEVD 514

Query: 522 VGKV 525
             K+
Sbjct: 515 SAKM 518



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 153/323 (47%), Gaps = 23/323 (7%)

Query: 256 DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG-DYDGIRYV 314
           D   Y+ IL  YA++GK +  + L+ +    G  P  + ++V+  ++G+ G  +D I  +
Sbjct: 214 DVRAYTTILHSYARTGKYKRAIDLFGKMKEIGLDPTLVTYNVMLDVYGKMGRSWDRILEL 273

Query: 315 LQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK 374
           L EM+S G++ +    +T++ A G+ G    AR    E+  +G  P   T  ++++++GK
Sbjct: 274 LDEMRSKGLELDEFTCSTVISACGREGMLDEARKFLAELKFNGYKPGTVTYNSMLQVFGK 333

Query: 375 ARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNY 434
           A    +AL + + M +N  P D + YN L       G ++E   + + M  S    P+  
Sbjct: 334 AGIYTEALSILKEMEDNNCPPDSVTYNELAATYVRAGFLDEGMAVIDTMT-SKGVMPNAI 392

Query: 435 SYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVS 494
           +YT +++ YG  G  D+A+ LF  M +LG A NV     ++  LGK  R +D+++V    
Sbjct: 393 TYTTVIDAYGKAGREDDALRLFSLMKDLGCAPNVYTYNSVLAMLGKKSRTEDVIKVLCEM 452

Query: 495 IDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIK 554
              G  P+      +L+V S       V KV                L E  + GFE  K
Sbjct: 453 KLNGCAPNRATWNTMLAVCSEEGKHNYVNKV----------------LREMKNCGFEPDK 496

Query: 555 EEFRNVIK-----DTEVDARRPF 572
           + F  +I       +EVD+ + +
Sbjct: 497 DTFNTLISAYARCGSEVDSAKMY 519



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 87/365 (23%), Positives = 150/365 (41%), Gaps = 75/365 (20%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLA--NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEW 244
           T+ YN  ++   FG+     E L+   EM  N    D++TY+ +     R    DE +  
Sbjct: 321 TVTYNSMLQV--FGKAGIYTEALSILKEMEDNNCPPDSVTYNELAATYVRAGFLDEGMAV 378

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG- 303
            + M   G+MP+ +TY+ ++D Y K+G+ ++ L L+      G  P+   ++ +  M G 
Sbjct: 379 IDTMTSKGVMPNAITYTTVIDAYGKAGREDDALRLFSLMKDLGCAPNVYTYNSVLAMLGK 438

Query: 304 ----------------------------------ESGDYDGIRYVLQEMKSLGVQPNLVV 329
                                             E G ++ +  VL+EMK+ G +P+   
Sbjct: 439 KSRTEDVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKDT 498

Query: 330 YNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMR 389
           +NTL+ A  + G    +  ++ EMV+SG TP   T                         
Sbjct: 499 FNTLISAYARCGSEVDSAKMYGEMVKSGFTPCVTT------------------------- 533

Query: 390 ENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNV 449
                     YN LLN  A  G  + AE + +DM+   + KP+  SY+ +L+ Y   GNV
Sbjct: 534 ----------YNALLNALARRGDWKAAESVIQDMRTKGF-KPNENSYSLLLHCYSKAGNV 582

Query: 450 DNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCL 509
               ++ +E+ +  V  + +    L+    K R +  + R F      G KPD  +   +
Sbjct: 583 KGIEKVEKEIYDGHVFPSWILLRTLVLTNHKCRHLRGMERAFDQLQKYGYKPDLVVINSM 642

Query: 510 LSVVS 514
           LS+ +
Sbjct: 643 LSMFA 647



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 66/299 (22%), Positives = 140/299 (46%), Gaps = 3/299 (1%)

Query: 206 IEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
           + ++  EM +   E D  T++T+I+   RC    ++ + +  M K+G  P   TY+A+L+
Sbjct: 480 VNKVLREMKNCGFEPDKDTFNTLISAYARCGSEVDSAKMYGEMVKSGFTPCVTTYNALLN 539

Query: 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325
             A+ G  +   S+ +     G+KP+  ++S+L   + ++G+  GI  V +E+    V P
Sbjct: 540 ALARRGDWKAAESVIQDMRTKGFKPNENSYSLLLHCYSKAGNVKGIEKVEKEIYDGHVFP 599

Query: 326 NLVVYNTLLEAMGKAGK-PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384
           + ++  TL+    K     G+ R+ FD++ + G  PD   + +++ ++ + +    A E+
Sbjct: 600 SWILLRTLVLTNHKCRHLRGMERA-FDQLQKYGYKPDLVVINSMLSMFARNKMFSKAREM 658

Query: 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYG 444
              + E     +   YN L+++    G   +AE + + ++ S   +PD  SY  ++  + 
Sbjct: 659 LHFIHECGLQPNLFTYNCLMDLYVREGECWKAEEVLKGIQNSG-PEPDVVSYNTVIKGFC 717

Query: 445 SGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
             G +  AI +  EM+  G+   ++     +         D+   V    I+   +P +
Sbjct: 718 RKGLMQEAIGVLSEMTTKGIQPTIVTYNTFLSGYAGMELFDEANEVIRFMIEHNCRPSE 776



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 74/329 (22%), Positives = 139/329 (42%), Gaps = 40/329 (12%)

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLA--NEMVSNEIELDNITYSTIITCAKRCNLFDEA 241
           P +++ YN    +  + R   L E +A  + M S  +  + ITY+T+I    +    D+A
Sbjct: 353 PPDSVTYNELAAT--YVRAGFLDEGMAVIDTMTSKGVMPNAITYTTVIDAYGKAGREDDA 410

Query: 242 IEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKM 301
           +  F  M   G  P+  TY+++L +  K  + E+V+ +      +G  P+   ++ +  +
Sbjct: 411 LRLFSLMKDLGCAPNVYTYNSVLAMLGKKSRTEDVIKVLCEMKLNGCAPNRATWNTMLAV 470

Query: 302 FGESGDYDGIRYVLQEMKSLGVQPN----------------------------------- 326
             E G ++ +  VL+EMK+ G +P+                                   
Sbjct: 471 CSEEGKHNYVNKVLREMKNCGFEPDKDTFNTLISAYARCGSEVDSAKMYGEMVKSGFTPC 530

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
           +  YN LL A+ + G    A S+  +M   G  P+E + + L+  Y KA   K   ++ +
Sbjct: 531 VTTYNALLNALARRGDWKAAESVIQDMRTKGFKPNENSYSLLLHCYSKAGNVKGIEKVEK 590

Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
            + +      +IL  TL+        +   ER F+ ++   Y KPD     +ML+++   
Sbjct: 591 EIYDGHVFPSWILLRTLVLTNHKCRHLRGMERAFDQLQKYGY-KPDLVVINSMLSMFARN 649

Query: 447 GNVDNAIELFEEMSELGVAINVMGCTCLI 475
                A E+   + E G+  N+    CL+
Sbjct: 650 KMFSKAREMLHFIHECGLQPNLFTYNCLM 678



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/344 (19%), Positives = 147/344 (42%), Gaps = 1/344 (0%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN  +  L    + + + ++  EM  N    +  T++T++         +   +    M 
Sbjct: 429 YNSVLAMLGKKSRTEDVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVLREMK 488

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
             G  PD+ T++ ++  YA+ G   +   +Y   V SG+ P    ++ L       GD+ 
Sbjct: 489 NCGFEPDKDTFNTLISAYARCGSEVDSAKMYGEMVKSGFTPCVTTYNALLNALARRGDWK 548

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               V+Q+M++ G +PN   Y+ LL    KAG       +  E+ +  + P    L  L+
Sbjct: 549 AAESVIQDMRTKGFKPNENSYSLLLHCYSKAGNVKGIEKVEKEIYDGHVFPSWILLRTLV 608

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
               K R  +     ++++++  +  D ++ N++L+M A   +  +A  +   +      
Sbjct: 609 LTNHKCRHLRGMERAFDQLQKYGYKPDLVVINSMLSMFARNKMFSKAREMLHFIHECG-L 667

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
           +P+ ++Y  ++++Y   G    A E+ + +   G   +V+    +I+   +   + + + 
Sbjct: 668 QPNLFTYNCLMDLYVREGECWKAEEVLKGIQNSGPEPDVVSYNTVIKGFCRKGLMQEAIG 727

Query: 490 VFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN 533
           V      +G++P        LS  +  E  ++  +VI  + + N
Sbjct: 728 VLSEMTTKGIQPTIVTYNTFLSGYAGMELFDEANEVIRFMIEHN 771



 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 102/201 (50%), Gaps = 22/201 (10%)

Query: 201 RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTY 260
           R  + +E+  +++     + D +  +++++   R  +F +A E    +++ GL P+  TY
Sbjct: 615 RHLRGMERAFDQLQKYGYKPDLVVINSMLSMFARNKMFSKAREMLHFIHECGLQPNLFTY 674

Query: 261 SAILDVYAKSG---KVEEVLSLYERGVA-SGWKPDPIAFSVLGKMFGESGDYDGIRYVLQ 316
           + ++D+Y + G   K EEVL    +G+  SG +PD ++++ + K F   G       VL 
Sbjct: 675 NCLMDLYVREGECWKAEEVL----KGIQNSGPEPDVVSYNTVIKGFCRKGLMQEAIGVLS 730

Query: 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE-------MVESGLTPDEKTLTALI 369
           EM + G+QP +V YNT L   G AG       LFDE       M+E    P E T   L+
Sbjct: 731 EMTTKGIQPTIVTYNTFLS--GYAG-----MELFDEANEVIRFMIEHNCRPSELTYKILV 783

Query: 370 KIYGKARWAKDALELWERMRE 390
             Y KA   ++A++   +++E
Sbjct: 784 DGYCKAGKYEEAMDFVSKIKE 804



 Score = 49.7 bits (117), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 4/99 (4%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLA--NEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           + + YN  +K   F R+  + E +   +EM +  I+   +TY+T ++      LFDEA E
Sbjct: 705 DVVSYNTVIKG--FCRKGLMQEAIGVLSEMTTKGIQPTIVTYNTFLSGYAGMELFDEANE 762

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
               M +    P E+TY  ++D Y K+GK EE +    +
Sbjct: 763 VIRFMIEHNCRPSELTYKILVDGYCKAGKYEEAMDFVSK 801



 Score = 43.1 bits (100), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 90/211 (42%), Gaps = 15/211 (7%)

Query: 121 VRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTRENALLILNSL-------KFWQKSYFF 173
           +R L L   K       E AF   + +  ++P     L+++NS+       K + K+   
Sbjct: 604 LRTLVLTNHKCRHLRGMERAF-DQLQKYGYKPD----LVVINSMLSMFARNKMFSKAREM 658

Query: 174 FNWIKSQNLFPMETIFYNVTMK-SLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            ++I    L P     YN  M   +R G  ++  E++   + ++  E D ++Y+T+I   
Sbjct: 659 LHFIHECGLQP-NLFTYNCLMDLYVREGECWK-AEEVLKGIQNSGPEPDVVSYNTVIKGF 716

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            R  L  EAI     M   G+ P  VTY+  L  YA     +E   +    +    +P  
Sbjct: 717 CRKGLMQEAIGVLSEMTTKGIQPTIVTYNTFLSGYAGMELFDEANEVIRFMIEHNCRPSE 776

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGV 323
           + + +L   + ++G Y+     + ++K L +
Sbjct: 777 LTYKILVDGYCKAGKYEEAMDFVSKIKELDI 807


>gi|224089372|ref|XP_002308709.1| predicted protein [Populus trichocarpa]
 gi|222854685|gb|EEE92232.1| predicted protein [Populus trichocarpa]
          Length = 1115

 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 105/384 (27%), Positives = 187/384 (48%), Gaps = 14/384 (3%)

Query: 113 STYSYNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTRE--NALLILNSLKFWQKS 170
           + YSYN  +     F  +   C    E + R ++E   +P+ +  +AL++ +  +   K+
Sbjct: 193 NAYSYNGLIH----FLLQSGFCKEALEVYRRMVSE-GLKPSLKTFSALMVASGKRRNIKT 247

Query: 171 YF-FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIE--QLANEMVSNEIELDNITYST 227
                  ++S  L P     Y + ++ L  GR  ++ E  ++   M  +    D +TY+ 
Sbjct: 248 VMGLLEEMESMGLRP-NIYTYTICIRVL--GRDGKIDEAYRIMKRMDDDGCGPDVVTYTV 304

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           +I         D+A+  F +M  +   PD+VTY  +LD ++  G +++V  ++    A G
Sbjct: 305 LIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADG 364

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
           + PD + F++L     ++G  +    +L  M+  GV PNL  YNTL+  + +A +   A 
Sbjct: 365 YAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDAL 424

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
            LF  M   G+ P   T   LI  +GK+     ALE +E+M+      + +  N  L   
Sbjct: 425 DLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKMKARGIAPNIVACNASLYSL 484

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
           A++G + EA+ +F ++K S    PD+ +Y  M+  Y   G VD AI+L  EMS++    +
Sbjct: 485 AEMGRLGEAKAMFNELK-SSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPD 543

Query: 468 VMGCTCLIQCLGKARRIDDLVRVF 491
           V+    LI  L KA R+++  ++F
Sbjct: 544 VIVINSLIDTLYKAGRVEEAWQMF 567



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 154/300 (51%), Gaps = 7/300 (2%)

Query: 206 IEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
           +E++  EM ++    D +T++ ++    +    +EA +  + M K G++P+  TY+ ++ 
Sbjct: 353 VEKIWTEMEADGYAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLIS 412

Query: 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325
              ++ ++++ L L+    + G +P    + +L    G+SG         ++MK+ G+ P
Sbjct: 413 GLLRANRLDDALDLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKMKARGIAP 472

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
           N+V  N  L ++ + G+ G A+++F+E+  SGL PD  T   ++K Y K     +A++L 
Sbjct: 473 NIVACNASLYSLAEMGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLL 532

Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLF---EDMKLSDYCKPDNYSYTAMLNI 442
             M + +   D I+ N+L++     G VEEA ++F   E+M L+    P   +Y  +L  
Sbjct: 533 SEMSKVQCEPDVIVINSLIDTLYKAGRVEEAWQMFCRMEEMNLA----PTVVTYNILLAG 588

Query: 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            G  G +  A++LFE M+  G + N +    L+ CL K   +D  +++F        +PD
Sbjct: 589 LGKEGQIQKAVQLFESMNGHGCSPNTITFNTLLDCLCKNDEVDLALKMFYKMTTMNCRPD 648



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/349 (26%), Positives = 167/349 (47%), Gaps = 1/349 (0%)

Query: 153 TRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANE 212
           + +  L +L+S+     + F+F  +         T   N  ++ LR  R+ + +  + + 
Sbjct: 90  SSDEVLGVLHSISDPIHALFYFKSVGELPNVVHTTETCNHMLEILRVHRRVEDMAFVFDL 149

Query: 213 MVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK 272
           M    I  +  TY  I           +A    E+M + G + +  +Y+ ++    +SG 
Sbjct: 150 MQRQIIRRNVDTYLIIFKSLFIRGGLRQAPSALEKMREAGFVLNAYSYNGLIHFLLQSGF 209

Query: 273 VEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNT 332
            +E L +Y R V+ G KP    FS L    G+  +   +  +L+EM+S+G++PN+  Y  
Sbjct: 210 CKEALEVYRRMVSEGLKPSLKTFSALMVASGKRRNIKTVMGLLEEMESMGLRPNIYTYTI 269

Query: 333 LLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENK 392
            +  +G+ GK   A  +   M + G  PD  T T LI     AR   DA+ L+ +M+ + 
Sbjct: 270 CIRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLIDALCTARKLDDAMCLFTKMKSSS 329

Query: 393 WPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNA 452
              D + Y TLL+  +D G +++ E+++ +M+   Y  PD  ++T ++N     G ++ A
Sbjct: 330 HKPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYA-PDVVTFTILVNALCKAGRINEA 388

Query: 453 IELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
            +L + M + GV  N+     LI  L +A R+DD + +F      GV+P
Sbjct: 389 FDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALDLFSNMESLGVEP 437



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 135/287 (47%), Gaps = 1/287 (0%)

Query: 190  YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
            YN+ +         ++   L  EM S     D  TY+++I    +    +E  + ++ M 
Sbjct: 793  YNLLIDGFLEVHNVEVAWNLFEEMKSAGCAPDTFTYNSLIDAHGKSGKINELFDLYDEML 852

Query: 250  KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
              G  P+ +TY+ ++    KS ++++ + LY   V+  + P P  F  L     +SG  D
Sbjct: 853  TRGCKPNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLD 912

Query: 310  GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
                +   M   G +PN  +YN L+   GK G    A   F  MV+ G+ PD K+ T L+
Sbjct: 913  DAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTILV 972

Query: 370  KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
             I   A    DAL  +E++++     D + YN ++N        EEA  LF +M+ +   
Sbjct: 973  DILCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQ-NRGI 1031

Query: 430  KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
             PD Y+Y +++   G  G ++ A +++EE+  +G+  NV     LI+
Sbjct: 1032 VPDLYTYNSLILNLGIVGMIEEAGKIYEELQFIGLKPNVFTYNALIR 1078



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 93/353 (26%), Positives = 161/353 (45%), Gaps = 48/353 (13%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
           TI  N   K+ R    F L++ +  + V   +     TY+T+I+   R N  D+A++ F 
Sbjct: 373 TILVNALCKAGRINEAFDLLDTMRKQGVLPNLH----TYNTLISGLLRANRLDDALDLFS 428

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYE----RGVA----------------- 285
            M   G+ P   TY  ++D + KSG   + L  +E    RG+A                 
Sbjct: 429 NMESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKMKARGIAPNIVACNASLYSLAEMG 488

Query: 286 --------------SGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYN 331
                         SG  PD + ++++ K + + G  D    +L EM  +  +P+++V N
Sbjct: 489 RLGEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVIN 548

Query: 332 TLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN 391
           +L++ + KAG+   A  +F  M E  L P   T   L+   GK    + A++L+E M  +
Sbjct: 549 SLIDTLYKAGRVEEAWQMFCRMEEMNLAPTVVTYNILLAGLGKEGQIQKAVQLFESMNGH 608

Query: 392 KWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDN 451
               + I +NTLL+       V+ A ++F  M   + C+PD  ++  +++ +     + N
Sbjct: 609 GCSPNTITFNTLLDCLCKNDEVDLALKMFYKMTTMN-CRPDVLTFNTIIHGFIKQNQIKN 667

Query: 452 AIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRV-------FGVSIDR 497
           AI LF +M +L    +V  CT L   + K+ +I+D  R+        G +IDR
Sbjct: 668 AIWLFHQMKKLLRPDHVTLCTLLPGVI-KSGQIEDAFRITEDFFYQVGSNIDR 719



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/323 (22%), Positives = 164/323 (50%), Gaps = 5/323 (1%)

Query: 140  AFLRAITEIPHQPTRENALLILNS---LKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKS 196
             F++   E+  +PT +   L+++    +   + ++  F  +KS    P +T  YN  + +
Sbjct: 776  VFVKFTKELGVKPTLKVYNLLIDGFLEVHNVEVAWNLFEEMKSAGCAP-DTFTYNSLIDA 834

Query: 197  LRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPD 256
                 +   +  L +EM++   + + ITY+ +I+   + N  D+A++ +  +      P 
Sbjct: 835  HGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSPT 894

Query: 257  EVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQ 316
              T+  ++D   KSG++++   +++  V  G +P+   +++L   +G+ G  D      +
Sbjct: 895  PCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFK 954

Query: 317  EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
             M   G++P+L  Y  L++ +  AG+   A   F+++ ++GL PD      +I   G+++
Sbjct: 955  RMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQ 1014

Query: 377  WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY 436
              ++AL L+  M+      D   YN+L+     +G++EEA +++E+++     KP+ ++Y
Sbjct: 1015 RTEEALSLFHEMQNRGIVPDLYTYNSLILNLGIVGMIEEAGKIYEELQFIGL-KPNVFTY 1073

Query: 437  TAMLNIYGSGGNVDNAIELFEEM 459
             A++  Y   GN + A  ++++M
Sbjct: 1074 NALIRGYTLSGNSELAYGIYKKM 1096



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 129/281 (45%), Gaps = 3/281 (1%)

Query: 242  IEW--FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
            + W  FE M   G  PD  TY++++D + KSGK+ E+  LY+  +  G KP+ I ++++ 
Sbjct: 808  VAWNLFEEMKSAGCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVI 867

Query: 300  KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
                +S   D    +   + S    P    +  L++ + K+G+   A  +FD MV  G  
Sbjct: 868  SNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCR 927

Query: 360  PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
            P+      L+  YGK      A E ++RM +     D   Y  L+++    G V++A   
Sbjct: 928  PNSAIYNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHY 987

Query: 420  FEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479
            FE +K +    PD  +Y  M+N  G     + A+ LF EM   G+  ++     LI  LG
Sbjct: 988  FEKLKQAGL-DPDLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILNLG 1046

Query: 480  KARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSE 520
                I++  +++      G+KP+      L+   +L   SE
Sbjct: 1047 IVGMIEEAGKIYEELQFIGLKPNVFTYNALIRGYTLSGNSE 1087



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 94/444 (21%), Positives = 182/444 (40%), Gaps = 41/444 (9%)

Query: 141 FLRAITEIP---HQPTRENALL-ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKS 196
           + +++ E+P   H     N +L IL   +  +   F F+ ++ Q +       Y +  KS
Sbjct: 110 YFKSVGELPNVVHTTETCNHMLEILRVHRRVEDMAFVFDLMQRQ-IIRRNVDTYLIIFKS 168

Query: 197 LRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPD 256
           L      +       +M      L+  +Y+ +I    +     EA+E + RM   GL P 
Sbjct: 169 LFIRGGLRQAPSALEKMREAGFVLNAYSYNGLIHFLLQSGFCKEALEVYRRMVSEGLKPS 228

Query: 257 EVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQ 316
             T+SA++    K   ++ V+ L E   + G +P+   +++  ++ G  G  D    +++
Sbjct: 229 LKTFSALMVASGKRRNIKTVMGLLEEMESMGLRPNIYTYTICIRVLGRDGKIDEAYRIMK 288

Query: 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
            M   G  P++V Y  L++A+  A K   A  LF +M  S   PD+ T   L+  +    
Sbjct: 289 RMDDDGCGPDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCG 348

Query: 377 WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK-------LSDY- 428
                 ++W  M  + +  D + +  L+N     G + EA  L + M+       L  Y 
Sbjct: 349 HLDKVEKIWTEMEADGYAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYN 408

Query: 429 --------------------------CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
                                      +P  Y+Y  +++ +G  G+   A+E FE+M   
Sbjct: 409 TLISGLLRANRLDDALDLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKMKAR 468

Query: 463 GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDV 522
           G+A N++ C   +  L +  R+ +   +F      G+ PD      ++   S     ++ 
Sbjct: 469 GIAPNIVACNASLYSLAEMGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQVDEA 528

Query: 523 GKVITCLQ--QANPKLVAFLNLIE 544
            K+++ +   Q  P ++   +LI+
Sbjct: 529 IKLLSEMSKVQCEPDVIVINSLID 552



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 146/325 (44%), Gaps = 7/325 (2%)

Query: 201 RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTY 260
           R  + +  L  EM S  +  +  TY+  I    R    DEA    +RM   G  PD VTY
Sbjct: 243 RNIKTVMGLLEEMESMGLRPNIYTYTICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTY 302

Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
           + ++D    + K+++ + L+ +  +S  KPD + +  L   F + G  D +  +  EM++
Sbjct: 303 TVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEA 362

Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380
            G  P++V +  L+ A+ KAG+   A  L D M + G+ P+  T   LI    +A    D
Sbjct: 363 DGYAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDD 422

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
           AL+L+  M           Y  L++     G   +A   FE MK +    P+  +  A L
Sbjct: 423 ALDLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKMK-ARGIAPNIVACNASL 481

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
                 G +  A  +F E+   G+A + +    +++C  K  ++D+ +++         +
Sbjct: 482 YSLAEMGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCE 541

Query: 501 PDDRLCGCLLSVVSLCETSEDVGKV 525
           PD      ++ + SL +T    G+V
Sbjct: 542 PD------VIVINSLIDTLYKAGRV 560



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 139/279 (49%), Gaps = 1/279 (0%)

Query: 252  GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGI 311
            G+ P    Y+ ++D + +   VE   +L+E   ++G  PD   ++ L    G+SG  + +
Sbjct: 785  GVKPTLKVYNLLIDGFLEVHNVEVAWNLFEEMKSAGCAPDTFTYNSLIDAHGKSGKINEL 844

Query: 312  RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371
              +  EM + G +PN + YN ++  + K+ +   A  L+  +V    +P   T   LI  
Sbjct: 845  FDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDG 904

Query: 372  YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
              K+    DA E+++ M       +  +YN L+N    +G V+ A   F+ M + +  +P
Sbjct: 905  LLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRM-VKEGIRP 963

Query: 432  DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
            D  SYT +++I    G VD+A+  FE++ + G+  +++    +I  LG+++R ++ + +F
Sbjct: 964  DLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQRTEEALSLF 1023

Query: 492  GVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQ 530
                +RG+ PD      L+  + +    E+ GK+   LQ
Sbjct: 1024 HEMQNRGIVPDLYTYNSLILNLGIVGMIEEAGKIYEELQ 1062



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 95/411 (23%), Positives = 170/411 (41%), Gaps = 42/411 (10%)

Query: 168  QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
            QK+   F  +      P  TI +N  +  L    +  L  ++  +M +     D +T++T
Sbjct: 596  QKAVQLFESMNGHGCSP-NTITFNTLLDCLCKNDEVDLALKMFYKMTTMNCRPDVLTFNT 654

Query: 228  IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
            II    + N    AI  F +M K  L PD VT   +L    KSG++E+   + E      
Sbjct: 655  IIHGFIKQNQIKNAIWLFHQMKKL-LRPDHVTLCTLLPGVIKSGQIEDAFRITEDFFYQV 713

Query: 288  WKPDPIAF--SVLGKMFGESGDYDGIRY-------------------------------- 313
                  +F   V+G +  E+G    I +                                
Sbjct: 714  GSNIDRSFWEDVMGGILTEAGTEKAILFGERLVCRAICKDDSVLIPIIKVLCKHKKTSVA 773

Query: 314  ---VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK 370
                ++  K LGV+P L VYN L++   +     +A +LF+EM  +G  PD  T  +LI 
Sbjct: 774  RNVFVKFTKELGVKPTLKVYNLLIDGFLEVHNVEVAWNLFEEMKSAGCAPDTFTYNSLID 833

Query: 371  IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCK 430
             +GK+    +  +L++ M       + I YN +++       +++A  L+ ++   D+  
Sbjct: 834  AHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDF-S 892

Query: 431  PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRV 490
            P   ++  +++     G +D+A E+F+ M   G   N      L+   GK   +D     
Sbjct: 893  PTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEF 952

Query: 491  FGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQA--NPKLVAF 539
            F   +  G++PD +    L+ ++ +    +D       L+QA  +P LVA+
Sbjct: 953  FKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLVAY 1003



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 89/365 (24%), Positives = 155/365 (42%), Gaps = 38/365 (10%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           FN +KS  L P +++ YN+ MK      Q     +L +EM   + E D I  +++I    
Sbjct: 497 FNELKSSGLAP-DSVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVINSLIDTLY 555

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
           +    +EA + F RM +  L P  VTY+ +L    K G++++ + L+E     G  P+ I
Sbjct: 556 KAGRVEEAWQMFCRMEEMNLAPTVVTYNILLAGLGKEGQIQKAVQLFESMNGHGCSPNTI 615

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
            F+ L     ++ + D    +  +M ++  +P+++ +NT++    K  +   A  LF +M
Sbjct: 616 TFNTLLDCLCKNDEVDLALKMFYKMTTMNCRPDVLTFNTIIHGFIKQNQIKNAIWLFHQM 675

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALEL----------------WERMREN----KW 393
            +  L PD  TL  L+    K+   +DA  +                WE +         
Sbjct: 676 -KKLLRPDHVTLCTLLPGVIKSGQIEDAFRITEDFFYQVGSNIDRSFWEDVMGGILTEAG 734

Query: 394 PMDFILYNTLL---NMCADIGLV-------------EEAERLFEDMKLSDYCKPDNYSYT 437
               IL+   L    +C D  ++               A  +F         KP    Y 
Sbjct: 735 TEKAILFGERLVCRAICKDDSVLIPIIKVLCKHKKTSVARNVFVKFTKELGVKPTLKVYN 794

Query: 438 AMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDR 497
            +++ +    NV+ A  LFEEM   G A +      LI   GK+ +I++L  ++   + R
Sbjct: 795 LLIDGFLEVHNVEVAWNLFEEMKSAGCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTR 854

Query: 498 GVKPD 502
           G KP+
Sbjct: 855 GCKPN 859



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 77/156 (49%)

Query: 213  MVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK 272
            MV   I  D  +Y+ ++         D+A+ +FE++ + GL PD V Y+ +++   +S +
Sbjct: 956  MVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQR 1015

Query: 273  VEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNT 332
             EE LSL+      G  PD   ++ L    G  G  +    + +E++ +G++PN+  YN 
Sbjct: 1016 TEEALSLFHEMQNRGIVPDLYTYNSLILNLGIVGMIEEAGKIYEELQFIGLKPNVFTYNA 1075

Query: 333  LLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
            L+     +G   LA  ++ +M+  G  P+  T   L
Sbjct: 1076 LIRGYTLSGNSELAYGIYKKMMVGGCDPNTGTFAQL 1111



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 3/171 (1%)

Query: 130  KLNDCDNTEEAFLRAITEIPHQPTRENALL--ILNSLKFWQKSYFFFNWIKSQNLFPMET 187
            KL   D   E F R + E      +   +L  IL        +  +F  +K   L P + 
Sbjct: 942  KLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDP-DL 1000

Query: 188  IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
            + YN+ +  L   ++ +    L +EM +  I  D  TY+++I       + +EA + +E 
Sbjct: 1001 VAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILNLGIVGMIEEAGKIYEE 1060

Query: 248  MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
            +   GL P+  TY+A++  Y  SG  E    +Y++ +  G  P+   F+ L
Sbjct: 1061 LQFIGLKPNVFTYNALIRGYTLSGNSELAYGIYKKMMVGGCDPNTGTFAQL 1111


>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
 gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
          Length = 755

 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/319 (26%), Positives = 160/319 (50%), Gaps = 1/319 (0%)

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           P + + Y+  +  L    +     +L  +M  N  E D +T++ ++    + +   EA +
Sbjct: 298 PPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQ 357

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
             E M      P+ +TYS+++D   K+G+V +   +++R +  G +P+ + ++ L   F 
Sbjct: 358 VLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFC 417

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
            +   D    +++EM + G  P+++ YNTL++ + K G+   A  LF +M      PD  
Sbjct: 418 MTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVI 477

Query: 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
           T + LI  + K      A  L++ M +     D + ++TL+    + GLV++AERL E+M
Sbjct: 478 TYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEM 537

Query: 424 KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483
             SD C PD Y+YT++++ +   G +  A  + + M++ G   NV+  T LI    +A +
Sbjct: 538 VASD-CSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGK 596

Query: 484 IDDLVRVFGVSIDRGVKPD 502
                R+    +  GV+P+
Sbjct: 597 PTVAYRLLEEMVGNGVQPN 615



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/288 (30%), Positives = 143/288 (49%), Gaps = 1/288 (0%)

Query: 215 SNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVE 274
           S E E + IT++ +I    + N   EA  +F +M K G +P+E TY+ +++ + K  KV 
Sbjct: 119 SMECEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVH 178

Query: 275 EVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLL 334
               L +    SG  P+ + +S +   F      D    + ++M   G  PNLV YNTLL
Sbjct: 179 RAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLL 238

Query: 335 EAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWP 394
             + + G    A  L DEM E GL PD+ +   L+    K      AL+++E       P
Sbjct: 239 SGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCP 298

Query: 395 MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIE 454
            D + Y+TL+      G ++EA +LFE M+  + C+PD  ++TA+++    G  +  A +
Sbjct: 299 PDVVAYSTLIAGLCKAGRLDEACKLFEKMR-ENSCEPDVVTFTALMDGLCKGDRLQEAQQ 357

Query: 455 LFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           + E M +     NV+  + LI  L K  ++ D   VF   I RG++P+
Sbjct: 358 VLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPN 405



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 100/376 (26%), Positives = 179/376 (47%), Gaps = 8/376 (2%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           +F  +K +   P E   YNV +       +      L  EM  + +  + +TYST+I   
Sbjct: 148 YFAKMKKKGTVPNEWT-YNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGF 206

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            R    D A + F +M + G MP+ VTY+ +L    ++G ++E   L +     G +PD 
Sbjct: 207 CRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDK 266

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
            ++  L     ++G  D    V ++  +    P++V Y+TL+  + KAG+   A  LF++
Sbjct: 267 FSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEK 326

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M E+   PD  T TAL+    K    ++A ++ E M +     + I Y++L++     G 
Sbjct: 327 MRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQ 386

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
           V +A+ +F+ M +    +P+  +Y ++++ +     VD+A+ L EEM+  G   +++   
Sbjct: 387 VRDAQEVFKRMIVRGI-EPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYN 445

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSE-DVGKVI--TCL 529
            LI  L K  R  +  R+FG    +   PD     CL+     C+    D+ + +    L
Sbjct: 446 TLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIG--GFCKLERIDMARTLFDDML 503

Query: 530 QQAN-PKLVAFLNLIE 544
           +QA  P +V F  L+E
Sbjct: 504 KQAVLPDVVTFSTLVE 519



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/318 (27%), Positives = 151/318 (47%), Gaps = 8/318 (2%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F  ++  +  P + + +   M  L  G + Q  +Q+   M       + ITYS++I   
Sbjct: 323 LFEKMRENSCEP-DVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGL 381

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +     +A E F+RM   G+ P+ VTY++++  +  +  V+  L L E   A+G  PD 
Sbjct: 382 CKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDI 441

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           I ++ L     ++G       +  +MK+    P+++ Y+ L+    K  +  +AR+LFD+
Sbjct: 442 ITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDD 501

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M++  + PD  T + L++ Y  A    DA  L E M  +    D   Y +L++    +G 
Sbjct: 502 MLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGR 561

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINV---- 468
           + EA R+ + M     C+P+  +YTA+++ +   G    A  L EEM   GV  NV    
Sbjct: 562 MVEARRVLKRMAKRG-CQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVITYR 620

Query: 469 --MGCTCLIQCLGKARRI 484
             +G  C    L +AR+I
Sbjct: 621 SLIGGFCGTGDLEEARKI 638



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 84/277 (30%), Positives = 136/277 (49%), Gaps = 4/277 (1%)

Query: 186 ETIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEW 244
           + I YN  +  L + GR  +   +L  +M +     D ITYS +I    +    D A   
Sbjct: 440 DIITYNTLIDGLCKTGRAPE-ANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTL 498

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
           F+ M K  ++PD VT+S +++ Y  +G V++   L E  VAS   PD   ++ L   F +
Sbjct: 499 FDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCK 558

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
            G     R VL+ M   G QPN+V Y  L++A  +AGKP +A  L +EMV +G+ P+  T
Sbjct: 559 VGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVIT 618

Query: 365 LTALIKIYGKARWAKDALELWERM-RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
             +LI  +      ++A ++ ER+ R+     D   Y  +++     G +  A  L E +
Sbjct: 619 YRSLIGGFCGTGDLEEARKILERLERDENCKADMFAYRVMMDGLCRTGRMSAALELLEAI 678

Query: 424 KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           K S    P +  Y A++     G  +  A+E+ EEM+
Sbjct: 679 KQSGT-PPRHDIYVALIRGLCQGKELGKAMEVLEEMT 714



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 120/255 (47%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  EM +     D ITY+T+I    +     EA   F  M      PD +TYS ++  + 
Sbjct: 428 LMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFC 487

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           K  +++   +L++  +     PD + FS L + +  +G  D    +L+EM +    P++ 
Sbjct: 488 KLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVY 547

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            Y +L++   K G+   AR +   M + G  P+  T TALI  + +A     A  L E M
Sbjct: 548 TYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEM 607

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
             N    + I Y +L+      G +EEA ++ E ++  + CK D ++Y  M++     G 
Sbjct: 608 VGNGVQPNVITYRSLIGGFCGTGDLEEARKILERLERDENCKADMFAYRVMMDGLCRTGR 667

Query: 449 VDNAIELFEEMSELG 463
           +  A+EL E + + G
Sbjct: 668 MSAALELLEAIKQSG 682



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 89/374 (23%), Positives = 163/374 (43%), Gaps = 37/374 (9%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           TY+ +     R    DE     +  +  G+ P+  TY+ ++    KSG +++   L E  
Sbjct: 26  TYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYAVVIQGLCKSGDLDKACELLEEM 85

Query: 284 VASGWKPDPIAFSVL------GKMFGESGDY-----------------DGI--------- 311
             SG  PD   ++ +       +   ++ DY                 DG+         
Sbjct: 86  RESGPVPDAAIYNFVIHALCKARNTAKALDYFRSMECEKNVITWTIMIDGLCKANRLPEA 145

Query: 312 RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371
                +MK  G  PN   YN L+    K  K   A  L  EM ESGL P+  T + +I  
Sbjct: 146 TTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHG 205

Query: 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
           + +      A +L+ +M EN    + + YNTLL+     GL++EA  L ++M+     +P
Sbjct: 206 FCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGL-QP 264

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           D +SY  ++      G +D A+++FE+ S      +V+  + LI  L KA R+D+  ++F
Sbjct: 265 DKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLF 324

Query: 492 GVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAFLNLIED--NS 547
               +   +PD      L+  +   +  ++  +V+  ++  N  P ++ + +LI+    +
Sbjct: 325 EKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKT 384

Query: 548 TGFENIKEEFRNVI 561
               + +E F+ +I
Sbjct: 385 GQVRDAQEVFKRMI 398



 Score = 47.0 bits (110), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 68/149 (45%), Gaps = 2/149 (1%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKT-GLMPDEVTYSAILDV 266
           +L  EMV N ++ + ITY ++I         +EA +  ER+ +      D   Y  ++D 
Sbjct: 602 RLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKILERLERDENCKADMFAYRVMMDG 661

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMK-SLGVQP 325
             ++G++   L L E    SG  P    +  L +   +  +      VL+EM  S   +P
Sbjct: 662 LCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEMTLSRKSRP 721

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMV 354
           N   Y  +++ + + G+   A +L DE++
Sbjct: 722 NAEAYEAVIQELAREGRHEEANALADELL 750


>gi|302818229|ref|XP_002990788.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
 gi|300141349|gb|EFJ08061.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
          Length = 624

 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/303 (28%), Positives = 148/303 (48%), Gaps = 9/303 (2%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D ++Y+T+I    +    D A    ++M   G  PD VTYS+++D + K G+VE  + L 
Sbjct: 181 DVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLL 240

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
           +  +  G +P+ +A++ L       G       +L EM+  G  P++V YN  ++ + KA
Sbjct: 241 DSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKA 300

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
            +   A+++FD MVE G TP+  + + L++   K +   DA+ L E+ RE    +D +LY
Sbjct: 301 ERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDAITLVEQAREKYQIVDILLY 360

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
             LL+     G  +EA  LF  +     C+PD + Y  ML+ +     +D A+++ ++M 
Sbjct: 361 TVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQML 420

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD--------DRLCGCLLSV 512
           E     NV+    L+  L    R+ D   +    +D G  PD        D +C C  S 
Sbjct: 421 ERNCC-NVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSA 479

Query: 513 VSL 515
            +L
Sbjct: 480 AAL 482



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 96/406 (23%), Positives = 180/406 (44%), Gaps = 15/406 (3%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           + + ++ L    Q +   QL   M       D+  Y+ +I+   +   F +A ++   M 
Sbjct: 13  FAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMV 72

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
           K   +P  VTY+ I+D   K+G+ ++ + L +     G  P+   ++V+ +   E    D
Sbjct: 73  KNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLD 132

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
             + +L+EM   G  P++V YN+ ++ + K  +   AR     M    +TPD  + T +I
Sbjct: 133 EAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARM---PVTPDVVSYTTVI 189

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
               K+     A  + ++M       D + Y++L++     G VE A  L + M L   C
Sbjct: 190 NGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSM-LKLGC 248

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
           +P+  +Y ++L      G++  A ++  EM   G   +V+     I  L KA R+     
Sbjct: 249 RPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKA 308

Query: 490 VFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPK-----LVAFLNLIE 544
           VF   ++RG  P+      L  V  LC+  E +   IT ++QA  K     ++ +  L++
Sbjct: 309 VFDRMVERGCTPNASSYSML--VEELCKKKE-LDDAITLVEQAREKYQIVDILLYTVLLD 365

Query: 545 DNSTG--FENIKEEFRNVIKDTEVDARRPFCNCLIDI-CRNRNLNE 587
               G  F+     F  V+ +   +    F N ++D  C+ R +++
Sbjct: 366 GLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDK 411



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 137/295 (46%), Gaps = 14/295 (4%)

Query: 213 MVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK 272
           M+    + D  T++ ++    R N  ++A +   RM + G +PD+  Y+A++  Y+K+  
Sbjct: 1   MIDKSCQPDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKD 60

Query: 273 VEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNT 332
             +        V +   P  + ++ +     ++G       +L EM+  G  PN+  YN 
Sbjct: 61  FGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNV 120

Query: 333 LLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENK 392
           ++E + +  K   A+ + +EM   G  PD  T  + IK   K     +A +   RM    
Sbjct: 121 IVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARM---- 176

Query: 393 WPM--DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
            P+  D + Y T++N     G ++ A R+ + M  +  C PD  +Y+++++ +  GG V+
Sbjct: 177 -PVTPDVVSYTTVINGLCKSGDLDSASRMLDQMT-NRGCTPDVVTYSSLIDGFCKGGEVE 234

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID---RGVKPD 502
            A+ L + M +LG   N++    L   LG   R+  + +   + ++   RG  PD
Sbjct: 235 RAMGLLDSMLKLGCRPNMVAYNSL---LGALHRLGHIGKAEDMLVEMERRGFTPD 286



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 119/263 (45%), Gaps = 17/263 (6%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + ++   F+ +  + +   +  FYNV + S    RQ     Q+  +M+      + +T++
Sbjct: 373 FDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLERNC-CNVVTWN 431

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
            ++      +   +A      M   G +PD VTY  ++D   K GK    L L+E  V  
Sbjct: 432 ILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKG 491

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRY--VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344
           G  PD + +S L           G+ +  + +E   L  + ++ ++N ++    + G   
Sbjct: 492 GCVPDVVTYSAL---------ITGLVHENMAEEAYLLFTKLDVALWNAMILGYAENGSGD 542

Query: 345 LARSLFDEMVESGLTPDEKTLTALIKIYGK---ARWAKDALELWERMRENKWPMDFILYN 401
           L   LF E++ES + P+ +T     +I GK   A     A  L++R  +  +  D  + N
Sbjct: 543 LGLKLFVELIESDVEPNARTFGK--EISGKLVKAESLGKARGLFDRAVKGGFFPDLFVAN 600

Query: 402 TLLNMCADIGLVEEAERLFEDMK 424
           TL+++ A  G +EEA R+F  MK
Sbjct: 601 TLIDVFAKCGDLEEARRIFYSMK 623



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 91/205 (44%), Gaps = 8/205 (3%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
            + +N+ +  L    +    E +   MV      D +TY T++    +C     A+E FE
Sbjct: 427 VVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFE 486

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
              K G +PD VTYSA++         EE   L+ +   + W        +LG     SG
Sbjct: 487 EAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTKLDVALWNA-----MILGYAENGSG 541

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEA-MGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           D  G++  ++ ++S  V+PN   +   +   + KA   G AR LFD  V+ G  PD    
Sbjct: 542 DL-GLKLFVELIES-DVEPNARTFGKEISGKLVKAESLGKARGLFDRAVKGGFFPDLFVA 599

Query: 366 TALIKIYGKARWAKDALELWERMRE 390
             LI ++ K    ++A  ++  M++
Sbjct: 600 NTLIDVFAKCGDLEEARRIFYSMKQ 624



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 96/209 (45%), Gaps = 9/209 (4%)

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLM-PDEVTYSAILDVYAKSGKVEEVLS 278
           +D + Y+ ++    +   FDEA   F ++    +  PD   Y+ +LD + K  ++++ L 
Sbjct: 355 VDILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQ 414

Query: 279 LYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMG 338
           ++++ +      + + +++L               +L  M   G  P+ V Y TL++AM 
Sbjct: 415 IHKQMLERNC-CNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMC 473

Query: 339 KAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFI 398
           K GK   A  LF+E V+ G  PD  T +ALI        A++A  L+ ++    W    +
Sbjct: 474 KCGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTKLDVALWNAMIL 533

Query: 399 LYNTLLNMCADIGLVEEAERLFEDMKLSD 427
            Y    N   D+GL     +LF ++  SD
Sbjct: 534 GYAE--NGSGDLGL-----KLFVELIESD 555


>gi|356499433|ref|XP_003518545.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Glycine max]
          Length = 905

 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 90/341 (26%), Positives = 167/341 (48%), Gaps = 4/341 (1%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN+ +  L    + +   ++ + M    +  + IT + +I    +    DEA   F  + 
Sbjct: 414 YNILIDMLCKAGELEAALKVQDSMKEAGLFPNIITVNIMIDRLCKAQRLDEACSIFLGLD 473

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
                PD VT+ +++D   + GKV +   LYE+ + SG  P+ + ++ L + F + G  +
Sbjct: 474 HKVCTPDSVTFCSLIDGLGRHGKVNDAYMLYEKMLDSGQTPNAVVYTSLIRNFFKCGRKE 533

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               + +EM   G  P+L++ N  ++ + KAG+    R+LF+E+   GLTPD ++ + LI
Sbjct: 534 DGHKIYKEMMHRGCSPDLMLLNNYMDCVFKAGEIEKGRALFEEIKAQGLTPDVRSYSILI 593

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
               K  ++KD  +L+  M+E    +D   YN +++     G V +A +L E+MK     
Sbjct: 594 HGLVKGGFSKDTYKLFYEMKEQGLHLDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGL- 652

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
           +P   +Y ++++       +D A  LFEE     V +NV+  + LI   GK  RID+   
Sbjct: 653 QPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKAVDLNVVVYSSLIDGFGKVGRIDEAYL 712

Query: 490 VFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQ 530
           +    + +G+ P+     CLL  +     +E++ + + C Q
Sbjct: 713 ILEELMQKGLTPNTYTWNCLLDALV---KAEEIDEALVCFQ 750



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 98/373 (26%), Positives = 163/373 (43%), Gaps = 14/373 (3%)

Query: 144 AITEIPHQPTRENALLILNSLKFWQKSYFFFNWI--KSQNLFPMETIFYNVTMKSLRFGR 201
           A+      P  E  + ++  LK  + +  +F W+  K++ L   E   YN  +  +   R
Sbjct: 89  ALNTFDEMPQPELVVGVIRRLKDVRVALHYFRWVERKTKQLHSPEA--YNALLMLMARTR 146

Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS 261
             + +EQ+  EM        N T   ++    +     EA    E M K    P    Y+
Sbjct: 147 NLEYLEQILEEMSMAGFGPSNNTCIEMVASFVKSRKLREAFGVIETMRKFKFRPAYSAYT 206

Query: 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
            ++   + + + + +L+L  +    G++     F+ L  +F   G  D    +L EMKS 
Sbjct: 207 TLIGALSAAHEADPMLTLLRQMQEIGYEVTVHLFTTLICVFAREGRVDAALSLLDEMKSN 266

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
               +LV+YN  ++  GK GK  +A   F E+   GL PD+ T T++I +  KA    +A
Sbjct: 267 SFNADLVLYNVCIDCFGKVGKVDMAWKFFHELKSQGLVPDDVTFTSMIGVLCKAERVDEA 326

Query: 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
           +EL+E +  NK       YNT++     +G   EA  L E  K    C P   +Y  +L 
Sbjct: 327 VELFEELDSNKSVPCVYAYNTMIMGYGSVGKFNEAYSLLERQKRKG-CIPSVIAYNCILT 385

Query: 442 IYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
             G  G V+ A+ + E M ++  A N+     LI  L KA  ++  ++V     + G+ P
Sbjct: 386 CLGRKGKVEEALRILEAM-KMDAAPNLTSYNILIDMLCKAGELEAALKVQDSMKEAGLFP 444

Query: 502 D--------DRLC 506
           +        DRLC
Sbjct: 445 NIITVNIMIDRLC 457



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 97/359 (27%), Positives = 158/359 (44%), Gaps = 9/359 (2%)

Query: 129 RKLNDCDNTEEAFLRAITEIPHQPTRENALLILNSLKF------WQKSYFFFNWIKSQNL 182
           R    C   E+   +   E+ H+    + +L+ N +         +K    F  IK+Q L
Sbjct: 524 RNFFKCGRKEDGH-KIYKEMMHRGCSPDLMLLNNYMDCVFKAGEIEKGRALFEEIKAQGL 582

Query: 183 FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
            P +   Y++ +  L  G   +   +L  EM    + LD   Y+ +I    +    ++A 
Sbjct: 583 TP-DVRSYSILIHGLVKGGFSKDTYKLFYEMKEQGLHLDTRAYNIVIDGFCKSGKVNKAY 641

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
           +  E M   GL P  VTY +++D  AK  +++E   L+E   +     + + +S L   F
Sbjct: 642 QLLEEMKTKGLQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKAVDLNVVVYSSLIDGF 701

Query: 303 GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
           G+ G  D    +L+E+   G+ PN   +N LL+A+ KA +   A   F  M      P+E
Sbjct: 702 GKVGRIDEAYLILEELMQKGLTPNTYTWNCLLDALVKAEEIDEALVCFQNMKNLKCPPNE 761

Query: 363 KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED 422
            T + ++    K R    A   W+ M++     + I Y T+++  A +G V EA+ LFE 
Sbjct: 762 VTYSIMVNGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTTMISGLARVGNVLEAKDLFER 821

Query: 423 MKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
            K S    PD+  Y AM+    +     +A  LFEE    G  I    C  L+  L KA
Sbjct: 822 FKSSGGI-PDSACYNAMIEGLSNANKAMDAYILFEETRLKGCRIYSKTCVVLLDALHKA 879



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 155/335 (46%), Gaps = 9/335 (2%)

Query: 173 FFNWIKSQNLFPMETIF---YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTII 229
           FF+ +KSQ L P +  F     V  K+ R     +L E+L     SN+       Y+T+I
Sbjct: 294 FFHELKSQGLVPDDVTFTSMIGVLCKAERVDEAVELFEELD----SNKSVPCVYAYNTMI 349

Query: 230 TCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWK 289
                   F+EA    ER  + G +P  + Y+ IL    + GKVEE L + E  +     
Sbjct: 350 MGYGSVGKFNEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRILE-AMKMDAA 408

Query: 290 PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSL 349
           P+  ++++L  M  ++G+ +    V   MK  G+ PN++  N +++ + KA +   A S+
Sbjct: 409 PNLTSYNILIDMLCKAGELEAALKVQDSMKEAGLFPNIITVNIMIDRLCKAQRLDEACSI 468

Query: 350 FDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCAD 409
           F  +     TPD  T  +LI   G+     DA  L+E+M ++    + ++Y +L+     
Sbjct: 469 FLGLDHKVCTPDSVTFCSLIDGLGRHGKVNDAYMLYEKMLDSGQTPNAVVYTSLIRNFFK 528

Query: 410 IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVM 469
            G  E+  +++++M +   C PD       ++     G ++    LFEE+   G+  +V 
Sbjct: 529 CGRKEDGHKIYKEM-MHRGCSPDLMLLNNYMDCVFKAGEIEKGRALFEEIKAQGLTPDVR 587

Query: 470 GCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR 504
             + LI  L K     D  ++F    ++G+  D R
Sbjct: 588 SYSILIHGLVKGGFSKDTYKLFYEMKEQGLHLDTR 622



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/323 (24%), Positives = 146/323 (45%), Gaps = 1/323 (0%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  E+ +  +  D  +YS +I    +     +  + F  M + GL  D   Y+ ++D + 
Sbjct: 573 LFEEIKAQGLTPDVRSYSILIHGLVKGGFSKDTYKLFYEMKEQGLHLDTRAYNIVIDGFC 632

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           KSGKV +   L E     G +P  + +  +     +    D    + +E KS  V  N+V
Sbjct: 633 KSGKVNKAYQLLEEMKTKGLQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKAVDLNVV 692

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
           VY++L++  GK G+   A  + +E+++ GLTP+  T   L+    KA    +AL  ++ M
Sbjct: 693 VYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNTYTWNCLLDALVKAEEIDEALVCFQNM 752

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
           +  K P + + Y+ ++N    +    +A   +++M+     KP+  +YT M++     GN
Sbjct: 753 KNLKCPPNEVTYSIMVNGLCKVRKFNKAFVFWQEMQKQGL-KPNTITYTTMISGLARVGN 811

Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGC 508
           V  A +LFE     G   +      +I+ L  A +  D   +F  +  +G +   + C  
Sbjct: 812 VLEAKDLFERFKSSGGIPDSACYNAMIEGLSNANKAMDAYILFEETRLKGCRIYSKTCVV 871

Query: 509 LLSVVSLCETSEDVGKVITCLQQ 531
           LL  +   +  E    V   L++
Sbjct: 872 LLDALHKADCLEQAAIVGAVLRE 894



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 91/400 (22%), Positives = 167/400 (41%), Gaps = 17/400 (4%)

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
           W ER  K    P+   Y+A+L + A++  +E +  + E    +G+ P       +   F 
Sbjct: 121 WVERKTKQLHSPE--AYNALLMLMARTRNLEYLEQILEEMSMAGFGPSNNTCIEMVASFV 178

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
           +S        V++ M+    +P    Y TL+ A+  A +     +L  +M E G      
Sbjct: 179 KSRKLREAFGVIETMRKFKFRPAYSAYTTLIGALSAAHEADPMLTLLRQMQEIGYEVTVH 238

Query: 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
             T LI ++ +      AL L + M+ N +  D +LYN  ++    +G V+ A + F ++
Sbjct: 239 LFTTLICVFAREGRVDAALSLLDEMKSNSFNADLVLYNVCIDCFGKVGKVDMAWKFFHEL 298

Query: 424 KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483
           K S    PD+ ++T+M+ +      VD A+ELFEE+        V     +I   G   +
Sbjct: 299 K-SQGLVPDDVTFTSMIGVLCKAERVDEAVELFEELDSNKSVPCVYAYNTMIMGYGSVGK 357

Query: 484 IDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQ-QANPKLVAFLNL 542
            ++   +      +G  P      C+L+ +      E+  +++  ++  A P L ++  L
Sbjct: 358 FNEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRILEAMKMDAAPNLTSYNIL 417

Query: 543 IEDNSTGFE-NIKEEFRNVIKDTEVDARRPFCNCLID-ICRNRNLNERAHELLYLG---- 596
           I+      E     + ++ +K+  +       N +ID +C+ + L+E     L L     
Sbjct: 418 IDMLCKAGELEAALKVQDSMKEAGLFPNIITVNIMIDRLCKAQRLDEACSIFLGLDHKVC 477

Query: 597 -----TLYGLYPGL--HNKTLDEWSLDVRSLSVGAAQTAL 629
                T   L  GL  H K  D + L  + L  G    A+
Sbjct: 478 TPDSVTFCSLIDGLGRHGKVNDAYMLYEKMLDSGQTPNAV 517



 Score = 59.7 bits (143), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 60/287 (20%), Positives = 117/287 (40%), Gaps = 20/287 (6%)

Query: 263 ILDVYAKSGKVEEVLSLYERGVASGWKPDP-IAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
           +LD Y     +E+ L+ ++        P P +   V+ ++          R+V ++ K L
Sbjct: 76  VLDTYPWGAALEDALNTFDE------MPQPELVVGVIRRLKDVRVALHYFRWVERKTKQL 129

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
              P    YN LL  M +         + +EM  +G  P   T   ++  + K+R  ++A
Sbjct: 130 H-SPE--AYNALLMLMARTRNLEYLEQILEEMSMAGFGPSNNTCIEMVASFVKSRKLREA 186

Query: 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
             + E MR+ K+   +  Y TL+   +     +    L   M+   Y +   + +T ++ 
Sbjct: 187 FGVIETMRKFKFRPAYSAYTTLIGALSAAHEADPMLTLLRQMQEIGY-EVTVHLFTTLIC 245

Query: 442 IYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
           ++   G VD A+ L +EM       +++     I C GK  ++D   + F     +G+ P
Sbjct: 246 VFAREGRVDAALSLLDEMKSNSFNADLVLYNVCIDCFGKVGKVDMAWKFFHELKSQGLVP 305

Query: 502 DDRLCGCLLSVVSLCETSE---------DVGKVITCLQQANPKLVAF 539
           DD     ++ V+   E  +         D  K + C+   N  ++ +
Sbjct: 306 DDVTFTSMIGVLCKAERVDEAVELFEELDSNKSVPCVYAYNTMIMGY 352



 Score = 59.7 bits (143), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 97/224 (43%), Gaps = 5/224 (2%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ--LANEMVSNEIELDNITYS 226
           ++Y  F   KS+ +  +  + Y+  +    FG+  ++ E   +  E++   +  +  T++
Sbjct: 674 EAYMLFEEAKSKAV-DLNVVVYSSLIDG--FGKVGRIDEAYLILEELMQKGLTPNTYTWN 730

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
            ++    +    DEA+  F+ M      P+EVTYS +++   K  K  +    ++     
Sbjct: 731 CLLDALVKAEEIDEALVCFQNMKNLKCPPNEVTYSIMVNGLCKVRKFNKAFVFWQEMQKQ 790

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G KP+ I ++ +       G+    + + +  KS G  P+   YN ++E +  A K   A
Sbjct: 791 GLKPNTITYTTMISGLARVGNVLEAKDLFERFKSSGGIPDSACYNAMIEGLSNANKAMDA 850

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
             LF+E    G     KT   L+    KA   + A  +   +RE
Sbjct: 851 YILFEETRLKGCRIYSKTCVVLLDALHKADCLEQAAIVGAVLRE 894


>gi|302806549|ref|XP_002985024.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
 gi|300147234|gb|EFJ13899.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
          Length = 570

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 95/336 (28%), Positives = 156/336 (46%), Gaps = 16/336 (4%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           Y   +  L   ++ Q    L  ++ +N       TY+ ++    +    +EAI+   ++ 
Sbjct: 168 YTAIVDWLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIV 227

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
             G  PD VTY++++D   K  +  E   L++     G   D + ++ L +   ++G   
Sbjct: 228 DNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAGKIP 287

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               V + M S G  P++V  +T+++ + KAG+ G A  +F  M   GL P+E   +ALI
Sbjct: 288 QASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALI 347

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
               KAR    ALE+  +M++     D I YN L++     G VE A   F++M L   C
Sbjct: 348 HGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEM-LEAGC 406

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
           KPD Y+Y  +++ +   GN D A  +F++MS    + NV+    LI  L K R++     
Sbjct: 407 KPDVYTYNILVSGFCKAGNTDAACGVFDDMSSSHCSPNVVTYGTLISGLCKRRQLTKASL 466

Query: 490 VFGVSIDRGVKPD--------DRLC-------GCLL 510
            F    +RG  PD        D LC       GC+L
Sbjct: 467 YFQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCML 502



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 90/375 (24%), Positives = 160/375 (42%), Gaps = 7/375 (1%)

Query: 94  WVNPTKPRRSVLSLQRQKRSTYSYNPRVRDLKLFARKLNDCDNTEEA--FLRAITEIPHQ 151
           W+   K  +  ++L  +K +     P +         L      EEA   LR I +    
Sbjct: 174 WLAKNKKIQDAVALM-EKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCT 232

Query: 152 PTRENALLILNSLKFWQKSYFFFNWIKSQNL--FPMETIFYNVTMKSLRFGRQFQLIEQL 209
           P       +++ L   ++S+  +   K   L    ++T+ Y   ++ L    +      +
Sbjct: 233 PDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAGKIPQASSV 292

Query: 210 ANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAK 269
              M S     D +T ST+I    +      A+  F+ M   GL P+EV YSA++    K
Sbjct: 293 YKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCK 352

Query: 270 SGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVV 329
           + K++  L +  +   +   PD I +++L     +SGD +  R    EM   G +P++  
Sbjct: 353 ARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYT 412

Query: 330 YNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMR 389
           YN L+    KAG    A  +FD+M  S  +P+  T   LI    K R    A   ++ M+
Sbjct: 413 YNILVSGFCKAGNTDAACGVFDDMSSSHCSPNVVTYGTLISGLCKRRQLTKASLYFQHMK 472

Query: 390 ENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNV 449
           E   P D  +Y++L++     G +E    LF++M+ S     ++ + T ++        V
Sbjct: 473 ERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSGV--ANSQTRTRLIFHLCKANRV 530

Query: 450 DNAIELFEEMSELGV 464
           D A+ LF  + + G+
Sbjct: 531 DEAVSLFNAIRKEGM 545



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 143/289 (49%), Gaps = 9/289 (3%)

Query: 217 EIELDNITYSTIITCAKRCNLFDEAIEWFERMY--KTGLMPDEVTYSAILDVYAKSGKVE 274
           EI  D +    I  C K  +L   A E F+ +   + G      T +A+LDV+A++ +  
Sbjct: 22  EISTDAVV--KIFQCLKDADL---AWELFQCLSSPRFGFQHSVHTGNALLDVFARTKRHR 76

Query: 275 EVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEM-KSLGVQPNLVVYNTL 333
           E  +L +  +A+ + PD   ++VL   +  + + +    V++EM +  GV P+L  +N +
Sbjct: 77  EAGNLLKNELATTFLPDVETWNVLITGYCLAREPEEAFAVIREMEEDYGVAPSLKTHNLV 136

Query: 334 LEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKW 393
           L  + K+GK   A   F+    +G T D  T TA++    K +  +DA+ L E++  N  
Sbjct: 137 LHGLCKSGKVLAAMDHFETTTTNGCTIDIHTYTAIVDWLAKNKKIQDAVALMEKITANGC 196

Query: 394 PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAI 453
                 YN LLN    +G +EEA  L   + + + C PD  +YT++++  G       A 
Sbjct: 197 TPTIATYNALLNGLCKMGRLEEAIDLLRKI-VDNGCTPDVVTYTSLIDGLGKEKRSFEAY 255

Query: 454 ELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           +LF+EM+  G+ ++ +  T LI+ L +A +I     V+     +G  PD
Sbjct: 256 KLFKEMALRGLVLDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPD 304



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 114/234 (48%), Gaps = 1/234 (0%)

Query: 252 GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGI 311
           G+ P   T++ +L    KSGKV   +  +E    +G   D   ++ +     ++      
Sbjct: 125 GVAPSLKTHNLVLHGLCKSGKVLAAMDHFETTTTNGCTIDIHTYTAIVDWLAKNKKIQDA 184

Query: 312 RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371
             +++++ + G  P +  YN LL  + K G+   A  L  ++V++G TPD  T T+LI  
Sbjct: 185 VALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDG 244

Query: 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
            GK + + +A +L++ M      +D + Y  L+      G + +A  +++ M  S  C P
Sbjct: 245 LGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAGKIPQASSVYKTMT-SQGCVP 303

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
           D  + + M++     G +  A+ +F+ M   G+A N +  + LI  L KAR++D
Sbjct: 304 DVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMD 357



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 124/262 (47%), Gaps = 1/262 (0%)

Query: 241 AIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGK 300
           A++ FE     G   D  TY+AI+D  AK+ K+++ ++L E+  A+G  P    ++ L  
Sbjct: 149 AMDHFETTTTNGCTIDIHTYTAIVDWLAKNKKIQDAVALMEKITANGCTPTIATYNALLN 208

Query: 301 MFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTP 360
              + G  +    +L+++   G  P++V Y +L++ +GK  +   A  LF EM   GL  
Sbjct: 209 GLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVL 268

Query: 361 DEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLF 420
           D    TALI+   +A     A  +++ M       D +  +T+++     G +  A R+F
Sbjct: 269 DTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIF 328

Query: 421 EDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK 480
           + M+      P+   Y+A+++       +D A+E+  +M +     + +    LI  L K
Sbjct: 329 KSMEARGL-APNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCK 387

Query: 481 ARRIDDLVRVFGVSIDRGVKPD 502
           +  ++     F   ++ G KPD
Sbjct: 388 SGDVEAARAFFDEMLEAGCKPD 409


>gi|224100421|ref|XP_002311869.1| predicted protein [Populus trichocarpa]
 gi|222851689|gb|EEE89236.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 92/308 (29%), Positives = 148/308 (48%), Gaps = 2/308 (0%)

Query: 179 SQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLF 238
           +Q + P +T+ Y   +         Q   +L +EM    I  D I Y+ +I    RC   
Sbjct: 73  NQGIVP-DTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLCRCGKM 131

Query: 239 DEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
            EA + F +M+  G+ PDEVTY+ ++D Y KSG++E+  SL+ + V SG  P+ + ++ L
Sbjct: 132 MEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTAL 191

Query: 299 GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
                + G  D    +L EM   G+Q N+  YN+L+  + K+G    A  L +EM  +G+
Sbjct: 192 ADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGM 251

Query: 359 TPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAER 418
            PD  T T L+  Y K      A EL   M +       I +N L+N     G++E+ ER
Sbjct: 252 YPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGER 311

Query: 419 LFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL 478
           L   M L     P+  +Y +++  Y    N+    E+++ M   GV  +      LI+  
Sbjct: 312 LLAWM-LEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVMPDSNTYNILIKGH 370

Query: 479 GKARRIDD 486
            KAR + +
Sbjct: 371 CKARNMKE 378



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 152/317 (47%), Gaps = 1/317 (0%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + Y+  +     G + Q + +L  EM    ++ +  TY++II    +    D+A    
Sbjct: 9   DVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDAERVL 68

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
             M   G++PD V Y+ ++D + K G ++    L++        PD IA++ +       
Sbjct: 69  REMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLCRC 128

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G       V  +M S GV+P+ V Y TL++   K+G+   A SL ++MV+SGLTP+  T 
Sbjct: 129 GKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTY 188

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
           TAL     K      A EL   M      ++   YN+L+N     G + +A +L E+M++
Sbjct: 189 TALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEV 248

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
           +    PD  ++T +++ Y   G +  A EL  EM + G+   V+    L+     +  ++
Sbjct: 249 AGM-YPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLE 307

Query: 486 DLVRVFGVSIDRGVKPD 502
           D  R+    +++G+ P+
Sbjct: 308 DGERLLAWMLEKGIMPN 324



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 134/294 (45%), Gaps = 2/294 (0%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           +K++   N +    L P   + Y      L    Q     +L +EM    ++L+  TY++
Sbjct: 167 EKAFSLHNQMVQSGLTP-NVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNS 225

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           ++    +     +A++  E M   G+ PD +T++ ++D Y K+G++ +   L    +  G
Sbjct: 226 LVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRG 285

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
            +P  I F+VL   F  SG  +    +L  M   G+ PN   YN+L++            
Sbjct: 286 LQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNSLMKQYCIRNNMRCTT 345

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
            ++  M   G+ PD  T   LIK + KAR  K+A  L + M E  + +    YN+++   
Sbjct: 346 EIYKGMCARGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMAEKGFNLTASSYNSIIKGF 405

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461
                + EA  LFE+M+  +    D   Y   ++I    GN++ A+EL +E  E
Sbjct: 406 FKKKKISEARELFEEMR-REGMAADAEIYNLFVDISYGEGNMETALELCDEAIE 458



 Score =  103 bits (256), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 78/253 (30%), Positives = 124/253 (49%), Gaps = 5/253 (1%)

Query: 252 GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGI 311
           G  PD V+YS +++ Y   G++++VL L +     G KP+   ++ +  +  +SG  D  
Sbjct: 5   GDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDA 64

Query: 312 RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371
             VL+EM + G+ P+ VVY TL++   K G    A  LFDEM +  + PD    TA+  I
Sbjct: 65  ERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAV--I 122

Query: 372 YGKARWAK--DALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
            G  R  K  +A +++ +M       D + Y TL++     G +E+A  L   M  S   
Sbjct: 123 CGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGL- 181

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
            P+  +YTA+ +     G VD A EL  EM   G+ +N+     L+  L K+  I   V+
Sbjct: 182 TPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVK 241

Query: 490 VFGVSIDRGVKPD 502
           +       G+ PD
Sbjct: 242 LMEEMEVAGMYPD 254



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 86/203 (42%), Gaps = 36/203 (17%)

Query: 318 MKSLGVQPNLVVYNTLLEA-----------------------------------MGKAGK 342
           MK  G  P++V Y+T++                                     + K+GK
Sbjct: 1   MKFRGDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGK 60

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
              A  +  EM+  G+ PD    T LI  + K    + A +L++ M + +   DFI Y  
Sbjct: 61  VDDAERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTA 120

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
           ++      G + EA+++F  M  S   +PD  +YT +++ Y   G ++ A  L  +M + 
Sbjct: 121 VICGLCRCGKMMEADKVFNKM-FSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQS 179

Query: 463 GVAINVMGCTCLIQCLGKARRID 485
           G+  NV+  T L   L K  ++D
Sbjct: 180 GLTPNVVTYTALADGLCKLGQVD 202



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 94/211 (44%), Gaps = 3/211 (1%)

Query: 182 LFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEA 241
           ++P +TI +   M +     +     +L  EM+   ++   IT++ ++       + ++ 
Sbjct: 251 MYP-DTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDG 309

Query: 242 IEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKM 301
                 M + G+MP+  TY++++  Y     +     +Y+   A G  PD   +++L K 
Sbjct: 310 ERLLAWMLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVMPDSNTYNILIKG 369

Query: 302 FGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD 361
             ++ +     ++ +EM   G       YN++++   K  K   AR LF+EM   G+  D
Sbjct: 370 HCKARNMKEAWFLHKEMAEKGFNLTASSYNSIIKGFFKKKKISEARELFEEMRREGMAAD 429

Query: 362 EKTLTALIKI-YGKARWAKDALELWERMREN 391
            +     + I YG+    + ALEL +   EN
Sbjct: 430 AEIYNLFVDISYGEGNM-ETALELCDEAIEN 459


>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 618

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 93/287 (32%), Positives = 138/287 (48%), Gaps = 15/287 (5%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           ITYS II    +    DEA E FE M   G++PD ++YS ++  +  +GK ++   L++ 
Sbjct: 238 ITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDE 297

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
            V  G +PD + FSVL     + G     + +L+ M   G+ PNL+ YN+L++     G 
Sbjct: 298 MVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGD 357

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
              AR LF  M   GL PDE + T LI  Y K    K+A+ L+  M +     +   Y T
Sbjct: 358 LNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGT 417

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS--GGNVDN-----AIEL 455
           LL      G V +A++LF  MK         Y  +A   IYG    G   N     A+EL
Sbjct: 418 LLKGLFQKGKVGDAKKLFGVMK--------TYGVSANSQIYGIFLDGLCKNDCLFEAMEL 469

Query: 456 FEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           F E+      +N+   +CLI  L KA +++    +F      G++PD
Sbjct: 470 FNELKSYNFKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPD 516



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/345 (23%), Positives = 168/345 (48%), Gaps = 4/345 (1%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F  +K+Q + P + I Y+  +       ++   + L +EMV   ++ D +T+S +I   
Sbjct: 259 LFEEMKAQGMIP-DVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLIDTL 317

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +     EA +  E M + G++P+ +TY++++D +   G +     L+    + G +PD 
Sbjct: 318 CKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDE 377

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           I+++ L   + ++        +  EM  +G  PN+  Y TLL+ + + GK G A+ LF  
Sbjct: 378 ISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKKLFGV 437

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M   G++ + +     +    K     +A+EL+  ++   + ++   Y+ L++     G 
Sbjct: 438 MKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKSYNFKLNIENYSCLIDGLCKAGK 497

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
           +E A  LFE +   +  +PD  +Y  M++ +   G VDNA  LFE+M E G   +++   
Sbjct: 498 LETAWELFEKLS-QEGLQPDVVTYNIMIHGFCKVGQVDNANILFEKMEENGCTPDIIAYN 556

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCE 517
            L+    +  ++++++++    + + V P+     C + V  LC+
Sbjct: 557 TLLCGFCEGNKLEEVIKLLHKMVQKDVSPNAA--SCTIVVDMLCK 599



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 98/391 (25%), Positives = 171/391 (43%), Gaps = 46/391 (11%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           Q  +FF   ++S  + P+ +  +N  +  L     +  +  L NEM    +  D  T S 
Sbjct: 74  QAFHFFDLMMRSHPIPPISS--FNRLLGGLAKINHYSQLFSLYNEMRLAGLSPDLFTLSI 131

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           +  C    N   EA+     + + G +P+ VTY+ ++       ++ E   L+ R    G
Sbjct: 132 LANCLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQKLG 191

Query: 288 WKPDPIAFSVLGKMFGESGDY--------------------------------DGI---- 311
             P+ + +  L K   ++G+                                 DG+    
Sbjct: 192 CTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKVG 251

Query: 312 -----RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
                + + +EMK+ G+ P+++ Y+TL+     AGK   ++ LFDEMV+ G+ PD  T +
Sbjct: 252 REDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFS 311

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
            LI    K     +A +L E M +     + I YN+L++    +G +  A  LF  M  S
Sbjct: 312 VLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSMP-S 370

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
              +PD  SYT ++N Y     V  A+ L+ EM ++G + NV     L++ L +  ++ D
Sbjct: 371 KGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGKVGD 430

Query: 487 LVRVFGVSIDRGVKPDDRLCGCLLSVVSLCE 517
             ++FGV    GV  + ++ G  L    LC+
Sbjct: 431 AKKLFGVMKTYGVSANSQIYGIFLD--GLCK 459



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 76/157 (48%), Gaps = 2/157 (1%)

Query: 231 CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
           C   C LF EA+E F  +       +   YS ++D   K+GK+E    L+E+    G +P
Sbjct: 458 CKNDC-LF-EAMELFNELKSYNFKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQP 515

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
           D + ++++   F + G  D    + ++M+  G  P+++ YNTLL    +  K      L 
Sbjct: 516 DVVTYNIMIHGFCKVGQVDNANILFEKMEENGCTPDIIAYNTLLCGFCEGNKLEEVIKLL 575

Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
            +MV+  ++P+  + T ++ +  K    K  ++L  +
Sbjct: 576 HKMVQKDVSPNAASCTIVVDMLCKDEKYKKFVDLLPK 612



 Score = 47.8 bits (112), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 32/136 (23%), Positives = 63/136 (46%), Gaps = 1/136 (0%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            FN +KS N F +    Y+  +  L    + +   +L  ++    ++ D +TY+ +I   
Sbjct: 469 LFNELKSYN-FKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGF 527

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +    D A   FE+M + G  PD + Y+ +L  + +  K+EEV+ L  + V     P+ 
Sbjct: 528 CKVGQVDNANILFEKMEENGCTPDIIAYNTLLCGFCEGNKLEEVIKLLHKMVQKDVSPNA 587

Query: 293 IAFSVLGKMFGESGDY 308
            + +++  M  +   Y
Sbjct: 588 ASCTIVVDMLCKDEKY 603


>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Glycine max]
          Length = 742

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/310 (28%), Positives = 151/310 (48%), Gaps = 2/310 (0%)

Query: 177 IKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCN 236
           +K+Q +FP + + Y   +          +  +L +EM   +I  D +TY+++I    +  
Sbjct: 348 MKNQRIFP-DNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAG 406

Query: 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS 296
              EA + F  M   GL PDEVTY+A++D Y K+G+++E  SL+ + V  G  P+ + ++
Sbjct: 407 KVVEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYT 466

Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356
            L     + G+ D    +L EM   G+QPN+  YN L+  + K G    A  L +EM  +
Sbjct: 467 ALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLA 526

Query: 357 GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEA 416
           G  PD  T T ++  Y K      A EL   M +       + +N L+N     G++E+ 
Sbjct: 527 GFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDG 586

Query: 417 ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
           ERL + M L     P+  ++ +++  Y    N+   IE+++ M   GV  +      LI+
Sbjct: 587 ERLIKWM-LDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIK 645

Query: 477 CLGKARRIDD 486
              KAR + +
Sbjct: 646 GHCKARNMKE 655



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 150/317 (47%), Gaps = 1/317 (0%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + Y+V +       Q   + +L  E+    ++ +  TY++II+   +     EA +  
Sbjct: 286 DVVSYSVIVDGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVL 345

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
             M    + PD V Y+ ++  + KSG V     L++        PD + ++ +     ++
Sbjct: 346 RVMKNQRIFPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQA 405

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G     R +  EM S G++P+ V Y  L++   KAG+   A SL ++MVE GLTP+  T 
Sbjct: 406 GKVVEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTY 465

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
           TAL+    K      A EL   M E     +   YN L+N    +G +E+A +L E+M L
Sbjct: 466 TALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDL 525

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
           + +  PD  +YT +++ Y   G +  A EL   M + G+   ++    L+     +  ++
Sbjct: 526 AGFF-PDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLE 584

Query: 486 DLVRVFGVSIDRGVKPD 502
           D  R+    +D+G+ P+
Sbjct: 585 DGERLIKWMLDKGIMPN 601



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/319 (26%), Positives = 145/319 (45%), Gaps = 42/319 (13%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           + ++Y+ I+    +     EA     +M   G +PD V+YS I+D Y +  ++ +VL L 
Sbjct: 251 NTVSYNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSYSVIVDGYCQVEQLGKVLKLM 310

Query: 281 ERGVASGWK-----------------------------------PDPIAFSVLGKMFGES 305
           E     G K                                   PD + ++ L   FG+S
Sbjct: 311 EELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISGFGKS 370

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G+      +  EMK   + P+ V Y +++  + +AGK   AR LF EM+  GL PDE T 
Sbjct: 371 GNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTY 430

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
           TALI  Y KA   K+A  L  +M E     + + Y  L++     G V+ A  L  +M  
Sbjct: 431 TALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMS- 489

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC---LGKAR 482
               +P+  +Y A++N     GN++ A++L EEM   G   + +  T ++     +G+  
Sbjct: 490 EKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMA 549

Query: 483 RIDDLVRVFGVSIDRGVKP 501
           +  +L+R+    +D+G++P
Sbjct: 550 KAHELLRIM---LDKGLQP 565



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 139/294 (47%), Gaps = 12/294 (4%)

Query: 220 LDNITYSTIITCAKRCNLF-----------DEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
            D +    ++     CNLF             A   F    + G+  + V+Y+ IL +  
Sbjct: 204 FDKLLNYGVLVSVDSCNLFLARLSNSFDGIRTAFRVFREYSEVGVCWNTVSYNIILHLLC 263

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           + GKV+E  SL  +    G  PD +++SV+   + +      +  +++E++  G++PN  
Sbjct: 264 QLGKVKEAHSLLIQMEFRGNVPDVVSYSVIVDGYCQVEQLGKVLKLMEELQRKGLKPNQY 323

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            YN+++  + K G+   A  +   M    + PD    T LI  +GK+       +L++ M
Sbjct: 324 TYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISGFGKSGNVSVEYKLFDEM 383

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
           +  K   DF+ Y ++++     G V EA +LF +M LS   KPD  +YTA+++ Y   G 
Sbjct: 384 KRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEM-LSKGLKPDEVTYTALIDGYCKAGE 442

Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           +  A  L  +M E G+  NV+  T L+  L K   +D    +     ++G++P+
Sbjct: 443 MKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPN 496



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 90/186 (48%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D ITY+TI+    +     +A E    M   GL P  VT++ +++ +  SG +E+   L 
Sbjct: 531 DTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLI 590

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
           +  +  G  P+   F+ L K +    +      + + M + GV P+   YN L++   KA
Sbjct: 591 KWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIKGHCKA 650

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
                A  L  EMVE G +    +  +LIK + K +  ++A +L+E MR + +  +  +Y
Sbjct: 651 RNMKEAWFLHKEMVEKGFSLTAASYNSLIKGFYKRKKFEEARKLFEEMRTHGFIAEKEIY 710

Query: 401 NTLLNM 406
           +  +++
Sbjct: 711 DIFVDV 716



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/204 (20%), Positives = 90/204 (44%), Gaps = 3/204 (1%)

Query: 182 LFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEA 241
            FP +TI Y   M +     +     +L   M+   ++   +T++ ++       + ++ 
Sbjct: 528 FFP-DTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDG 586

Query: 242 IEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKM 301
               + M   G+MP+  T+++++  Y     +   + +Y+   A G  PD   +++L K 
Sbjct: 587 ERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIKG 646

Query: 302 FGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD 361
             ++ +     ++ +EM   G       YN+L++   K  K   AR LF+EM   G   +
Sbjct: 647 HCKARNMKEAWFLHKEMVEKGFSLTAASYNSLIKGFYKRKKFEEARKLFEEMRTHGFIAE 706

Query: 362 EKTLTALIKI-YGKARWAKDALEL 384
           ++     + + Y +  W ++ LEL
Sbjct: 707 KEIYDIFVDVNYEEGNW-ENTLEL 729



 Score = 47.4 bits (111), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 36/170 (21%), Positives = 77/170 (45%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           +NV M         +  E+L   M+   I  +  T+++++      N     IE ++ M+
Sbjct: 570 FNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMH 629

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
             G++PD  TY+ ++  + K+  ++E   L++  V  G+     +++ L K F +   ++
Sbjct: 630 AQGVVPDTNTYNILIKGHCKARNMKEAWFLHKEMVEKGFSLTAASYNSLIKGFYKRKKFE 689

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
             R + +EM++ G      +Y+  ++   + G       L DE +E  L 
Sbjct: 690 EARKLFEEMRTHGFIAEKEIYDIFVDVNYEEGNWENTLELCDEAIEKCLV 739


>gi|224713518|gb|ACN62066.1| PPR-817 [Zea mays]
          Length = 817

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 88/357 (24%), Positives = 162/357 (45%), Gaps = 36/357 (10%)

Query: 180 QNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFD 239
           Q   P + + YN  + +L   R     E    +MV+  +  +N TY+ +I        + 
Sbjct: 250 QRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWK 309

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEE------------------------ 275
           EA+  F+ M +  ++PD VT S ++    K GK++E                        
Sbjct: 310 EAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIML 369

Query: 276 -----------VLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQ 324
                      +  L++  +  G  PD   F+VL K +   G  D    +  EM+  GV+
Sbjct: 370 NGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVK 429

Query: 325 PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384
           P++V Y T++ A+ + GK   A   F++M++ G+ PD+     LI+ +        A EL
Sbjct: 430 PDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKEL 489

Query: 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYG 444
              +  N   +D + +++++N    +G V +A+ +F D+ ++    PD   Y  +++ Y 
Sbjct: 490 ISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIF-DLTVNVGLHPDAVVYNMLMDGYC 548

Query: 445 SGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
             G ++ A+ +F+ M   G+  NV+G   L+    K  RID+ + +F   + RG+KP
Sbjct: 549 LVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQRGIKP 605



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 153/337 (45%), Gaps = 3/337 (0%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  EMV   I  D +TY++++    +    D+A  +  +M    ++P+  TY+ ++  Y+
Sbjct: 244 LFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYS 303

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
            +G+ +E + +++        PD +  S+L     + G     R V   M   G  P++ 
Sbjct: 304 STGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVF 363

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            YN +L      G       LFD M+  G+ PD  T   LIK Y        A+ ++  M
Sbjct: 364 SYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEM 423

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
           R++    D + Y T++     IG +++A   F  M +     PD Y+Y  ++  + + G+
Sbjct: 424 RDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQM-IDQGVAPDKYAYNCLIQGFCTHGS 482

Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGC 508
           +  A EL  E+   G+ ++++  + +I  L K  R+ D   +F ++++ G+ PD  +   
Sbjct: 483 LLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNM 542

Query: 509 LLSVVSLCETSEDVGKVITCLQQAN--PKLVAFLNLI 543
           L+    L    E   +V   +  A   P +V +  L+
Sbjct: 543 LMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLV 579



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 146/294 (49%), Gaps = 2/294 (0%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           FN +  Q + P +   YN  ++           ++L +E+++N + LD + +S+II    
Sbjct: 455 FNQMIDQGVAP-DKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLC 513

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
           +     +A   F+     GL PD V Y+ ++D Y   GK+E+ L +++  V++G +P+ +
Sbjct: 514 KLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVV 573

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
            +  L   + + G  D    + +EM   G++P+ ++Y+ +++ + +AG+   A+  F EM
Sbjct: 574 GYGTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFEAGRTVPAKMKFHEM 633

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
            ESG+  D  T   +++   K R   +A+ L++ +R     ++ I  NT+++       V
Sbjct: 634 TESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRV 693

Query: 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
           EEA+ LF  +  S    P   +Y+ M+      G V+ A ++F  M   G   N
Sbjct: 694 EEAKDLFASISRSRLV-PSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPN 746



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 86/360 (23%), Positives = 156/360 (43%), Gaps = 74/360 (20%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS-LYER 282
           TY+ ++ C  R +  + A+ +F ++ +TGL  + +  + +L+ + ++ + +E L  L  R
Sbjct: 116 TYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEALDILLHR 175

Query: 283 GVASGWKPDPIAFSVLGKMF---GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
               G  PD  ++S+L K     G+SG  D +  ++ E  ++   PN+V YNT+++   K
Sbjct: 176 TPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAV-CSPNVVAYNTVIDGFFK 234

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR---------------------WA 378
            G    A  LF EMV+ G+ PD  T  +++    KAR                     W 
Sbjct: 235 EGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWT 294

Query: 379 --------------KDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFE--- 421
                         K+A+ +++ MR +    D +  + L+      G ++EA  +F+   
Sbjct: 295 YNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMA 354

Query: 422 -------------------------------DMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
                                          D+ L D   PD Y++  ++  Y + G +D
Sbjct: 355 MKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLD 414

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
            A+ +F EM + GV  +V+    +I  L +  ++DD +  F   ID+GV PD     CL+
Sbjct: 415 KAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLI 474



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 132/287 (45%), Gaps = 2/287 (0%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
           NEM  + ++ D +TY T+I    R    D+A+E F +M   G+ PD+  Y+ ++  +   
Sbjct: 421 NEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTH 480

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
           G + +   L    + +G   D + FS +     + G     + +     ++G+ P+ VVY
Sbjct: 481 GSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVY 540

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
           N L++     GK   A  +FD MV +G+ P+      L+  Y K     + L L+  M +
Sbjct: 541 NMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQ 600

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
                  ILY+ +++   + G    A+  F +M  S     D  +Y  +L         D
Sbjct: 601 RGIKPSTILYSIIIDGLFEAGRTVPAKMKFHEMTESGIAM-DICTYNIVLRGLFKNRCFD 659

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDR 497
            AI LF+E+  + V IN++    +I  + + RR+++   +F  SI R
Sbjct: 660 EAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFA-SISR 705



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 89/183 (48%), Gaps = 2/183 (1%)

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382
           + P    Y  L++   +A +P LA + F +++ +GL  +      L++ + +A+   +AL
Sbjct: 110 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEAL 169

Query: 383 E-LWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM-KLSDYCKPDNYSYTAML 440
           + L  R  E     D   Y+ LL    D G   +A+ L   M +    C P+  +Y  ++
Sbjct: 170 DILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVI 229

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
           + +   G+V+ A +LF+EM + G+  +++    ++  L KAR +D         +++ V 
Sbjct: 230 DGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVL 289

Query: 501 PDD 503
           P++
Sbjct: 290 PNN 292



 Score = 45.4 bits (106), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 36/186 (19%), Positives = 83/186 (44%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
           TI Y++ +  L    +    +   +EM  + I +D  TY+ ++    +   FDEAI  F+
Sbjct: 607 TILYSIIIDGLFEAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFK 666

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
            +    +  + +T + ++D   ++ +VEE   L+     S   P  + +S++     + G
Sbjct: 667 ELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPSVVTYSIMITNLIKEG 726

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
             +    +   M++ G +PN  + N ++  + K  +   A +   ++ E   + +  T  
Sbjct: 727 LVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTAM 786

Query: 367 ALIKIY 372
            L+ ++
Sbjct: 787 LLVDLF 792


>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
          Length = 694

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 157/304 (51%), Gaps = 1/304 (0%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           + +N  +  L    + +   ++ +EMV   +  D ++Y+T+++   +     E++  F  
Sbjct: 224 VTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSE 283

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M + GL+PD VT+++++    K+G +E+ ++L  +    G + + + F+ L   F + G 
Sbjct: 284 MTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGF 343

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
            D     ++EM+  G+QP++V YN L+    K G+  LAR L  EM    + PD  T + 
Sbjct: 344 LDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYST 403

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           +I  Y K      A +L ++M +     D I Y++L+    +   + +A  LFE+M L  
Sbjct: 404 IISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENM-LQL 462

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
             +PD ++YT +++ +   GNV+ A+ L +EM   GV  +V+  + LI  L K+ R  + 
Sbjct: 463 GVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEA 522

Query: 488 VRVF 491
            R+ 
Sbjct: 523 HRLL 526



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 92/356 (25%), Positives = 173/356 (48%), Gaps = 4/356 (1%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           P  P     LL L+         F  + ++   + P     YN+ +++L    + +    
Sbjct: 116 PSVPAYNAVLLALSDASLPSARRFLSSMLR-HGVAP-NVYTYNILVRALCARGRLEEAVG 173

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTG-LMPDEVTYSAILDVY 267
           +  +M       + +TY+T++    R    D A      M + G   P+ VT++++++  
Sbjct: 174 VVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGL 233

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            K+G++E    +++  V  G  PD ++++ L   + + G       V  EM   G+ P++
Sbjct: 234 CKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDV 293

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
           V + +L+ A  KAG    A +L  +M E GL  +E T TALI  + K  +  DAL   E 
Sbjct: 294 VTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEE 353

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           MR+       + YN L+N    +G ++ A  L  +M+ +   KPD  +Y+ +++ Y   G
Sbjct: 354 MRKCGIQPSVVCYNALINGYCKLGRMDLARELIREME-AKRVKPDVVTYSTIISGYCKVG 412

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
           N+D+A +L ++M + GV  + +  + LI+ L + +R++D   +F   +  GV+PD+
Sbjct: 413 NLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDE 468



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 132/286 (46%), Gaps = 19/286 (6%)

Query: 187 TIFYNVTMKS-LRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
            + YN  +    + GR   L  +L  EM +  ++ D +TYSTII+   +    D A +  
Sbjct: 363 VVCYNALINGYCKLGR-MDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLN 421

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           ++M K G++PD +TYS+++    +  ++ +   L+E  +  G +PD   ++ L     + 
Sbjct: 422 QKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKE 481

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE--- 362
           G+ +    +  EM   GV P++V Y+ L+  + K+ +   A  L  ++      PD    
Sbjct: 482 GNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKY 541

Query: 363 ------------KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
                       K++ AL+K +      K+A ++++ M +  W +D  +Y+ L++     
Sbjct: 542 DALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRG 601

Query: 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNV--DNAIE 454
           G V +A    + M  S +      + + +  ++  G  V  DNAI+
Sbjct: 602 GNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADNAIQ 647



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 85/181 (46%), Gaps = 1/181 (0%)

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
           G  P++  YN +L A+  A  P  AR     M+  G+ P+  T   L++        ++A
Sbjct: 113 GYAPSVPAYNAVLLALSDASLPS-ARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEA 171

Query: 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
           + +   MR      + + YNTL+      G ++ AER+   M+     KP+  ++ +M+N
Sbjct: 172 VGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVN 231

Query: 442 IYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
                G ++ A ++F+EM   G+A +V+    L+    K   + + + VF     RG+ P
Sbjct: 232 GLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVP 291

Query: 502 D 502
           D
Sbjct: 292 D 292



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/200 (22%), Positives = 85/200 (42%), Gaps = 15/200 (7%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + I Y+  ++ L   ++     +L   M+   ++ D  TY+T+I    +    ++A+   
Sbjct: 432 DAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLH 491

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG------ 299
           + M + G++PD VTYS +++  +KS + +E   L  +       PD I +  L       
Sbjct: 492 DEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKA 551

Query: 300 ---------KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
                    K F   G       V Q M     + +  VY+ L+    + G    A S  
Sbjct: 552 EFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFH 611

Query: 351 DEMVESGLTPDEKTLTALIK 370
            +M+ SG +P+  +  +L++
Sbjct: 612 KQMLRSGFSPNSTSTISLVR 631


>gi|297737369|emb|CBI26570.3| unnamed protein product [Vitis vinifera]
          Length = 1042

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 107/397 (26%), Positives = 183/397 (46%), Gaps = 10/397 (2%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           +L NE+  + I+ D ITY+T+I+   R +  +EA++ +  M      PD  TY+A++ VY
Sbjct: 255 ELLNEVRRSGIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVY 314

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            + G   E   L++   + G+ PD + ++ L   F   G+ D ++ + ++M  +G   + 
Sbjct: 315 GRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDE 374

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
           + YNT++   GK G+  LA  L+ +M  SG +PD  T T LI   GKA   K+A E+   
Sbjct: 375 MTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSE 434

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           M   +       ++ L+   A  G   EAE  F+ M L    KPD+ +Y+ ML+I     
Sbjct: 435 MLNARVKPTLRTFSALICGYAKAGKRVEAEETFDCM-LRSGIKPDHLAYSVMLDILLRFN 493

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCG 507
               A++L++EM       +      +++ LGK  R +D+ +V        VK  + LCG
Sbjct: 494 ESGKAMKLYQEMVLHSFKPDHALYEVMLRVLGKENREEDVHKV--------VKDMEELCG 545

Query: 508 CLLSVV-SLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEV 566
               V+ S+    E        L+ A  +        +    G     EE    +   E 
Sbjct: 546 MNSQVICSILVKGECFDHAANMLRLAISQGCELDQYGKARDFGLFCGTEELFEGLLSKEC 605

Query: 567 DARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYP 603
              R F + ++ + RN   + +A +LL +    G+ P
Sbjct: 606 KLDRSFYHIMMKMFRNSGNHSKAEKLLGVMKEAGVEP 642



 Score =  130 bits (326), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 88/339 (25%), Positives = 168/339 (49%), Gaps = 6/339 (1%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
             N ++   + P + I YN  + +       +   ++ N+MV++  + D  TY+ +I+  
Sbjct: 256 LLNEVRRSGIQP-DIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVY 314

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            RC +  EA   F+ +   G +PD VTY+++L  +A+ G V++V  + E  V  G+  D 
Sbjct: 315 GRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDE 374

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           + ++ +  M+G+ G +D    +  +MK  G  P+ V Y  L++++GKA     A  +  E
Sbjct: 375 MTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSE 434

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M+ + + P  +T +ALI  Y KA    +A E ++ M  +    D + Y+ +L++      
Sbjct: 435 MLNARVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRFNE 494

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
             +A +L+++M L  + KPD+  Y  ML + G     ++  ++ ++M EL    + + C+
Sbjct: 495 SGKAMKLYQEMVLHSF-KPDHALYEVMLRVLGKENREEDVHKVVKDMEELCGMNSQVICS 553

Query: 473 CLI--QCLGKARRIDDLVRVFGVSIDRGVKPDD--RLCG 507
            L+  +C   A  +  L    G  +D+  K  D    CG
Sbjct: 554 ILVKGECFDHAANMLRLAISQGCELDQYGKARDFGLFCG 592



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/344 (23%), Positives = 163/344 (47%), Gaps = 3/344 (0%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLF--DEAIEWFER 247
           YN  M       +F  +++L + M S   E D ++++T+I    +      + AIE    
Sbjct: 200 YNAMMGVYARTGRFTKVQELLDLMRSRGCEPDLVSFNTLINARLKSGTMVTNLAIELLNE 259

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           + ++G+ PD +TY+ ++   ++   +EE + +Y   VA   +PD   ++ +  ++G  G 
Sbjct: 260 VRRSGIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGM 319

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
                 + ++++S G  P+ V YN+LL A  + G     + + ++MV+ G   DE T   
Sbjct: 320 SREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNT 379

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           +I +YGK      A +L+  M+ +    D + Y  L++      +++EA  +  +M L+ 
Sbjct: 380 IIHMYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEM-LNA 438

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
             KP   +++A++  Y   G    A E F+ M   G+  + +  + ++  L +       
Sbjct: 439 RVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRFNESGKA 498

Query: 488 VRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ 531
           ++++   +    KPD  L   +L V+      EDV KV+  +++
Sbjct: 499 MKLYQEMVLHSFKPDHALYEVMLRVLGKENREEDVHKVVKDMEE 542



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 126/601 (20%), Positives = 234/601 (38%), Gaps = 77/601 (12%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F  ++S+   P + + YN  + +         ++++  +MV      D +TY+TII   
Sbjct: 326 LFKDLESKGFLP-DAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMY 384

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +    D A + +  M  +G  PD VTY+ ++D   K+  ++E   +    + +  KP  
Sbjct: 385 GKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNARVKPTL 444

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
             FS L   + ++G           M   G++P+ + Y+ +L+ + +  + G A  L+ E
Sbjct: 445 RTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRFNESGKAMKLYQE 504

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE----NKWPMDFIL-----YNTL 403
           MV     PD      ++++ GK    +D  ++ + M E    N   +  IL     ++  
Sbjct: 505 MVLHSFKPDHALYEVMLRVLGKENREEDVHKVVKDMEELCGMNSQVICSILVKGECFDHA 564

Query: 404 LNM----------------CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
            NM                  D GL    E LFE + LS  CK D   Y  M+ ++ + G
Sbjct: 565 ANMLRLAISQGCELDQYGKARDFGLFCGTEELFEGL-LSKECKLDRSFYHIMMKMFRNSG 623

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLG------KARRIDDLVRVFG--------- 492
           N   A +L   M E GV   +     L+          +A ++ D ++V G         
Sbjct: 624 NHSKAEKLLGVMKEAGVEPTIATMHLLMVSYSGSGQPEEAEKVLDNLKVEGLPLSTLPYS 683

Query: 493 -------------VSIDR-------GVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQA 532
                        V+I +       G++PD R+  C +   SL + + +   ++  L+  
Sbjct: 684 SVIDAYLKNGDHNVAIQKLMEMKKDGLEPDHRIWTCFVRAASLSQHTSEAIVLLKALRDT 743

Query: 533 NPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHEL 592
              L   + L+ + S    +  +     +   E +A   F N L D+     L   A  +
Sbjct: 744 GFDLP--IRLLTEKSDSLVSEVDNCLEKLGPLEDNAAFNFVNALEDLLWAFELRATASWV 801

Query: 593 LYLGTLYGLY-PGLHNKTLDEWSLDVRSLSVGAAQTALEEWM----------WTLAKIVL 641
             L     +Y   +      +W  D R +S G+A   L  W+          W  A +  
Sbjct: 802 FQLAVKRSIYRHDVFRVAEKDWGADFRKMSAGSALVGLTLWLDHMQAKYFYFWQDASLQ- 860

Query: 642 REEVLPQLFLAETGTGTHKFSQGLATAFASHVNKLAAPFRQSEGKAGCFVATREDLVSWV 701
              + P+  +  TGT  +     L +   + + ++ +PF   + ++G  VA    L  W+
Sbjct: 861 GYPLSPKSVVLITGTAEYNMVS-LNSTLKAFLWEMGSPFLPCKTRSGLLVAKAHSLRMWL 919

Query: 702 Q 702
           +
Sbjct: 920 K 920



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 83/177 (46%), Gaps = 3/177 (1%)

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI--KIYGKARWAKDALELWE 386
           VYN ++    + G+    + L D M   G  PD  +   LI  ++         A+EL  
Sbjct: 199 VYNAMMGVYARTGRFTKVQELLDLMRSRGCEPDLVSFNTLINARLKSGTMVTNLAIELLN 258

Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
            +R +    D I YNTL++ C+    +EEA +++ DM ++  C+PD ++Y AM+++YG  
Sbjct: 259 EVRRSGIQPDIITYNTLISACSRESNLEEAVKVYNDM-VAHRCQPDLWTYNAMISVYGRC 317

Query: 447 GNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
           G    A  LF+++   G   + +    L+    +   +D +  +    +  G   D+
Sbjct: 318 GMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDE 374


>gi|449451896|ref|XP_004143696.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 1032

 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/316 (29%), Positives = 165/316 (52%), Gaps = 10/316 (3%)

Query: 189 FYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFD--EAIEWFE 246
           F N+  KS     + Q+ E+   +M+S+ I  +N+ Y+ +I     C++ +  EA+  F+
Sbjct: 562 FINLYSKS----GEIQVAERYFKDMLSSGIVPNNVIYTILIK--GHCDVGNTVEALSTFK 615

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
            M + GL+PD   YSAI+   +K+GK +E + ++ + + +G  PD   ++ L   F + G
Sbjct: 616 CMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEG 675

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
           D +    +  EM   G+ PN+VVYNTL+  + K G+   AR LFDE+ E  L PD  T +
Sbjct: 676 DIEKASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYS 735

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
            +I  Y K+    +A +L++ M       D  +Y  L++ C   G +E+A  LF + +  
Sbjct: 736 TIIDGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQK 795

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
                   ++ ++++ +   G V  A ELF++M +  +  N++  T LI   GKA  +++
Sbjct: 796 SVGSLS--AFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEE 853

Query: 487 LVRVFGVSIDRGVKPD 502
             ++F     R + P+
Sbjct: 854 AEQLFLDMETRNIIPN 869



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/359 (25%), Positives = 173/359 (48%), Gaps = 8/359 (2%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           Y+V +  L      Q   ++ ++M+ N ++ +   Y T+I    + + ++ AIE  + M 
Sbjct: 454 YSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMI 513

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
             G++PD   Y+ ++    ++ KVEE   L       G KP+   +     ++ +SG+  
Sbjct: 514 ANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQ 573

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
                 ++M S G+ PN V+Y  L++     G    A S F  M+E GL PD +  +A+I
Sbjct: 574 VAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAII 633

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
               K    K+A+ ++ +  +     D  LYN+L++     G +E+A +L+++M L +  
Sbjct: 634 HSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEM-LHNGI 692

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
            P+   Y  ++N     G V  A ELF+E+ E  +  +V+  + +I    K+  + +  +
Sbjct: 693 NPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFK 752

Query: 490 VFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPK----LVAFLNLIE 544
           +F   I +G+ PD  +  C+L  +  C    ++ K ++   +A  K    L AF +LI+
Sbjct: 753 LFDEMISKGISPDGYIY-CIL--IDGCGKEGNLEKALSLFHEAQQKSVGSLSAFNSLID 808



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/315 (28%), Positives = 151/315 (47%), Gaps = 43/315 (13%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           QL +EM+ N I  + + Y+T+I    +     +A E F+ + +  L+PD VTYS I+D Y
Sbjct: 682 QLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGY 741

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQE--MKSLGVQP 325
            KSG + E   L++  ++ G  PD   + +L    G+ G+ +    +  E   KS+G   
Sbjct: 742 CKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVG--- 798

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
           +L  +N+L+++  K GK   AR LFD+MV+  LTP+  T T LI  YGKA          
Sbjct: 799 SLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAE--------- 849

Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445
                                     ++EEAE+LF DM+  +   P+  +YT++L  Y  
Sbjct: 850 --------------------------MMEEAEQLFLDMETRNII-PNTLTYTSLLLSYNQ 882

Query: 446 GGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRL 505
            GN    I LF++M   G+A + +    +     K  +  + +++   S+  G+K +D +
Sbjct: 883 IGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEGIKLEDDV 942

Query: 506 CGCLLSVVSLCETSE 520
              L  +  LC+  +
Sbjct: 943 FDAL--IFHLCKEKQ 955



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 94/341 (27%), Positives = 158/341 (46%), Gaps = 9/341 (2%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           ++ +EM++  ++L+ +TY+ +I    +     +A+  F  M   GL PD  TY+ ++D Y
Sbjct: 367 RIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGY 426

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            KS  + +   L     A    P P  +SVL      S D      VL +M   GV+PN+
Sbjct: 427 LKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNV 486

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
            +Y TL++A  +  +  +A  L   M+ +G+ PD      LI    +A+  ++A  L   
Sbjct: 487 FMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVD 546

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           M E     +   Y   +N+ +  G ++ AER F+DM LS    P+N  YT ++  +   G
Sbjct: 547 MGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDM-LSSGIVPNNVIYTILIKGHCDVG 605

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCG 507
           N   A+  F+ M E G+  ++   + +I  L K  +  + + VF   +  GV PD  L  
Sbjct: 606 NTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYN 665

Query: 508 CLLSVVSLCETSEDVGKVITCLQQA-----NPKLVAFLNLI 543
            L+S    C+   D+ K      +      NP +V +  LI
Sbjct: 666 SLIS--GFCKEG-DIEKASQLYDEMLHNGINPNIVVYNTLI 703



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 83/310 (26%), Positives = 154/310 (49%), Gaps = 5/310 (1%)

Query: 209 LANEMVSNEIELDN----ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAIL 264
           +  +MV +E+E +      TY+  I    +    DEA+E  + M + GL PD  TY+ ++
Sbjct: 259 IKGKMVLSEMEKECKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLV 318

Query: 265 DVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQ 324
           D + K  + +E   ++E   +SG  P+   ++ L   F + G+ +    +  EM + G++
Sbjct: 319 DGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLK 378

Query: 325 PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384
            N+V YN ++  + KAG+   A SLF+EM+ +GL PD  T   LI  Y K+     A EL
Sbjct: 379 LNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACEL 438

Query: 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYG 444
              M+  K       Y+ L++       +++A  + + M + +  KP+ + Y  ++  Y 
Sbjct: 439 LAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQM-IRNGVKPNVFMYGTLIKAYV 497

Query: 445 SGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR 504
                + AIEL + M   GV  ++    CLI  L +A+++++   +     ++G+KP+  
Sbjct: 498 QESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAH 557

Query: 505 LCGCLLSVVS 514
             G  +++ S
Sbjct: 558 TYGAFINLYS 567



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 150/336 (44%), Gaps = 3/336 (0%)

Query: 185 METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEW 244
           +  + YN  +  +    +      L NEM+   +E D  TY+ +I    + +   +A E 
Sbjct: 379 LNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACEL 438

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
              M    L P   TYS ++     S  +++   + ++ + +G KP+   +  L K + +
Sbjct: 439 LAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQ 498

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
              Y+    +L+ M + GV P+L  YN L+  + +A K   A+ L  +M E G+ P+  T
Sbjct: 499 ESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHT 558

Query: 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
             A I +Y K+   + A   ++ M  +    + ++Y  L+    D+G   EA   F+ M 
Sbjct: 559 YGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCM- 617

Query: 425 LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484
           L     PD  +Y+A+++     G    A+ +F +  + GV  +V     LI    K   I
Sbjct: 618 LEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDI 677

Query: 485 DDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSE 520
           +   +++   +  G+ P+  +   L++   LC+  E
Sbjct: 678 EKASQLYDEMLHNGINPNIVVYNTLIN--GLCKLGE 711



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 132/295 (44%), Gaps = 14/295 (4%)

Query: 225 YSTIITCAK------RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKV---EE 275
           + T+I C        + N+     + +  M +  ++PD  TY+ ++  + K G V   + 
Sbjct: 204 FPTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKM 263

Query: 276 VLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLE 335
           VLS  E+      KP+   ++       ++G  D    V + M   G+ P+   Y  L++
Sbjct: 264 VLSEMEKEC----KPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVD 319

Query: 336 AMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPM 395
              K  +   A+ +F+ M  SGL P+  T TALI  + K    ++AL + + M      +
Sbjct: 320 GFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKL 379

Query: 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIEL 455
           + + YN ++   A  G + +A  LF +M ++   +PD ++Y  +++ Y    ++  A EL
Sbjct: 380 NVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGL-EPDTWTYNLLIDGYLKSHDMAKACEL 438

Query: 456 FEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
             EM    +  +    + LI  L  +  +     V    I  GVKP+  + G L+
Sbjct: 439 LAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLI 493



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 96/217 (44%), Gaps = 35/217 (16%)

Query: 320 SLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK--------I 371
           S G  P L+  N L+  + KA   GL   ++  MVE+ + PD  T T +IK        I
Sbjct: 200 SEGFFPTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVI 259

Query: 372 YGKARWAK--------------------------DALELWERMRENKWPMDFILYNTLLN 405
            GK   ++                          +ALE+ + M E     D   Y  L++
Sbjct: 260 KGKMVLSEMEKECKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVD 319

Query: 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
                   +EA+ +FE M  S    P+ ++YTA+++ +   GN++ A+ + +EM   G+ 
Sbjct: 320 GFCKQKRSKEAKLIFESMP-SSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLK 378

Query: 466 INVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           +NV+    +I  + KA  +   + +F   +  G++PD
Sbjct: 379 LNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPD 415


>gi|222635128|gb|EEE65260.1| hypothetical protein OsJ_20463 [Oryza sativa Japonica Group]
          Length = 1443

 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 169/354 (47%), Gaps = 6/354 (1%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKR--CNLFDEAIEWFER 247
           +N  M       +F    QL + M   +IE D ++++T+I    +  C     A+E    
Sbjct: 224 FNAMMGVYARSGRFDDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCLAAGVALELLHE 283

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           + + GL PD +TY+ ++   ++   +++ ++++E  +AS  +PD   ++ +  + G  G 
Sbjct: 284 VRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVSVHGRCGK 343

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
                 + +E+   G QP+ V YN+LL A  K G       + +E+V++G   D  T   
Sbjct: 344 AQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNT 403

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           +I +YGK      AL L++ MR      D + Y  L++    +  + EA ++ E+M  + 
Sbjct: 404 MIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAG 463

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
             KP   +++A++  Y   G  D+A   F+ M E GV  + +    ++    ++     L
Sbjct: 464 -LKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSDETRKL 522

Query: 488 VRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQ---QANPKLVA 538
           + ++   I  G KPDD L   LL+ ++     +++  VI  ++   + NP +++
Sbjct: 523 MVLYRAMIKDGYKPDDGLYQVLLAALAKGNEHDEIEGVIQDMEAVFEMNPLVIS 576



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 167/352 (47%), Gaps = 12/352 (3%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
             + ++   L P + I YN  + +   G        +  EM+++E   D  TY+ +++  
Sbjct: 280 LLHEVRQAGLRP-DAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVSVH 338

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            RC    EA   F+ + + G  PD VTY+++L  +AK G VE V  + E  V +G++ D 
Sbjct: 339 GRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDG 398

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           I ++ +  M+G+ G  D    +  EM+++G  P+ V Y  L++++GK  +   A  + +E
Sbjct: 399 ITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEE 458

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M ++GL P   T +ALI  Y K+    DA   ++RM E+    D + Y  +L++ A    
Sbjct: 459 MADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSDE 518

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
             +   L+  M + D  KPD+  Y  +L     G   D    + ++M     A+  M   
Sbjct: 519 TRKLMVLYRAM-IKDGYKPDDGLYQVLLAALAKGNEHDEIEGVIQDME----AVFEMNPL 573

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGK 524
            +   L KA  I     +   +  +G +PD +      S++S+ +  E +GK
Sbjct: 574 VISSILIKAECISQGASLLKRACLQGYEPDGK------SLLSILDAYEKMGK 619



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 117/535 (21%), Positives = 231/535 (43%), Gaps = 16/535 (2%)

Query: 177  IKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCN 236
            IK   L  +E++  N  M++L    +   +  +  E+   +I++   T   ++    +  
Sbjct: 809  IKKGPLPTVESV--NGMMRALIVDGRLDELYVVVQELQDLDIKISKSTVLLMLEAFAKAG 866

Query: 237  LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS 296
               E ++ +  M   G +P+   Y  ++ +   + +  +V  +      +G+KPD +  +
Sbjct: 867  DVFEVMKIYNGMKAAGYLPNMHLYRIMISLLCHNKRFRDVELMVAEMEGAGFKPDLVVLN 926

Query: 297  VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356
             L  M+  +G++D    V   +   G++P+   YNTL+    +  +P    +L  EM + 
Sbjct: 927  TLLLMYTGTGNFDRTIEVYHSILEAGLEPDEDTYNTLIVMYSRNFRPEEGFTLLYEMGKR 986

Query: 357  GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEA 416
            GLTP  ++   L+   GKA+  + A  L+E MR   + ++  +Y+ ++ +  +     +A
Sbjct: 987  GLTPKLESYKILLAASGKAKLWEQADLLFEEMRTKGYRLNRSIYHMMMKIYRNARNHSKA 1046

Query: 417  ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
            E L   MK  D  +P   +   ++  YG+ G+ D A ++   +    + I+ +  + ++ 
Sbjct: 1047 EHLLSAMK-EDGIEPTIATMHILMTSYGTSGHPDEAEKVLNSLKSSNLEISTLPYSTVLD 1105

Query: 477  CLGKARRID-DLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPK 535
               + R     + ++  +  D GV+PD ++    +   SLCE ++D   ++  LQ     
Sbjct: 1106 AYLRNRDYSLGITKLLEMKRD-GVEPDHQVWTSFIRAASLCEQTDDAILLLKSLQDCGFD 1164

Query: 536  LVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYL 595
            L   L L E  S+ F  + + F   +   E  A   F N L D+         A  +  L
Sbjct: 1165 LPIRL-LTERTSSLFTEV-DSFLEKLGTLEDSASLNFVNALEDLLWAFERRATASWIFQL 1222

Query: 596  GTLYGLYPGLHNKTL----DEWSLDVRSLSVGAAQTALEEWMWTLAKIVLR-EEVLPQLF 650
                 +Y   H+        +W  D+R LS GAA  AL  W+  +    L+     P+  
Sbjct: 1223 AVKRSIY---HHNIFRVEEKDWGADLRKLSAGAALVALTLWLDQMQDASLQGAPESPKSI 1279

Query: 651  LAETGTGTHKFSQGLATAFASHVNKLAAPFRQSEGKAGCFVATREDLVSWVQARP 705
            +  TG G +     L     +++ ++ +PF     ++G FV     L  W++  P
Sbjct: 1280 VLVTGEGEYNMVS-LRKTIRAYLLEMGSPFLPCRSRSGRFVVKAYSLKMWLKDSP 1333



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/324 (21%), Positives = 139/324 (42%), Gaps = 6/324 (1%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           Q++   F  +  +   P + + YN  + +       + +E++  E+V      D ITY+T
Sbjct: 345 QEAELMFKELVEKGFQP-DAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNT 403

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           +I    +    D A+  ++ M   G  PD VTY+ ++D   K  ++ E   + E    +G
Sbjct: 404 MIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAG 463

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
            KP  + FS L   + +SG  D        M   GV+P+ + Y  +L+   ++ +     
Sbjct: 464 LKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSDETRKLM 523

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
            L+  M++ G  PD+     L+    K     D +E   +  E  + M+ ++ +++L   
Sbjct: 524 VLYRAMIKDGYKPDDGLYQVLLAALAKGN-EHDEIEGVIQDMEAVFEMNPLVISSILIKA 582

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
                + +   L +   L  Y +PD  S  ++L+ Y   G  +  + L E + +     +
Sbjct: 583 E---CISQGASLLKRACLQGY-EPDGKSLLSILDAYEKMGKHEKGLSLLEWIRQHVPNSH 638

Query: 468 VMGCTCLIQCLGKARRIDDLVRVF 491
            +   C I  L K  +I D ++ +
Sbjct: 639 NLISECSIMLLCKNGKIVDAIQEY 662



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 89/176 (50%), Gaps = 3/176 (1%)

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR--WAKDALELWE 386
           V+N ++    ++G+   AR L D M +  + PD  +   LI    K+    A  ALEL  
Sbjct: 223 VFNAMMGVYARSGRFDDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCLAAGVALELLH 282

Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
            +R+     D I YNTL++ C+    +++A  +FE+M  S+ C+PD ++Y AM++++G  
Sbjct: 283 EVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASE-CRPDLWTYNAMVSVHGRC 341

Query: 447 GNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           G    A  +F+E+ E G   + +    L+    K   ++ + RV    +  G + D
Sbjct: 342 GKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKD 397



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 76/161 (47%), Gaps = 5/161 (3%)

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
            LA  +F      G T   +   A++ +Y ++    DA +L + MR+     D + +NTL
Sbjct: 205 ALAEDVFLRFAREGATV--QVFNAMMGVYARSGRFDDARQLLDAMRDQDIEPDLVSFNTL 262

Query: 404 LNMCADIGLVEE--AERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461
           +N  A  G +    A  L  +++ +   +PD  +Y  +++    G N+D+A+ +FEEM  
Sbjct: 263 INARAKSGCLAAGVALELLHEVRQAG-LRPDAITYNTLISACSQGSNLDDAVAVFEEMIA 321

Query: 462 LGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
                ++     ++   G+  +  +   +F   +++G +PD
Sbjct: 322 SECRPDLWTYNAMVSVHGRCGKAQEAELMFKELVEKGFQPD 362


>gi|224124604|ref|XP_002319373.1| predicted protein [Populus trichocarpa]
 gi|222857749|gb|EEE95296.1| predicted protein [Populus trichocarpa]
          Length = 810

 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 152/291 (52%), Gaps = 2/291 (0%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           + Y+ ++    +  L+D+A   F+ M   G  PDEVTY++++ +++    +++   L + 
Sbjct: 343 LEYNVMVKAYGKAKLYDKAFSLFKGMRNHGTWPDEVTYNSLIQMFSGGDLMDQARDLLDE 402

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
              +G+KP  + FS +   +   G       V QEM   GV+PN VVY +L+    + G 
Sbjct: 403 MQEAGFKPQCLTFSAVMACYARLGQLSDAVDVYQEMVKAGVKPNEVVYGSLINGFAEVGN 462

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
              A   F  M ESG+  ++  LT+LIK+Y K      A  L+++M++ +   D I  N+
Sbjct: 463 VEEALKYFRMMEESGIPANQIVLTSLIKVYSKLGCFDGAKHLYKKMKDLEGGPDIIASNS 522

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
           ++++ AD+G++ EAE +F++++  +  + D  S+  M+ +Y S G +D AI++ EEM + 
Sbjct: 523 MISLYADLGMISEAELVFKNLR--ENGQADGVSFATMMYLYKSMGMLDEAIDIAEEMKQS 580

Query: 463 GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVV 513
           G+  + +    ++ C     ++ +   +    I + + PD      L +V+
Sbjct: 581 GLLRDCVSYNKVMACYATNGQLRECAELLHEMIGQKLLPDGGTFKILFTVL 631



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/371 (21%), Positives = 159/371 (42%), Gaps = 36/371 (9%)

Query: 165 KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNIT 224
           K + K++  F  +++   +P E + YN  ++    G        L +EM     +   +T
Sbjct: 356 KLYDKAFSLFKGMRNHGTWPDE-VTYNSLIQMFSGGDLMDQARDLLDEMQEAGFKPQCLT 414

Query: 225 YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
           +S ++ C  R     +A++ ++ M K G+ P+EV Y ++++ +A+ G VEE L  +    
Sbjct: 415 FSAVMACYARLGQLSDAVDVYQEMVKAGVKPNEVVYGSLINGFAEVGNVEEALKYFRMME 474

Query: 285 ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344
            SG   + I  + L K++ + G +DG +++ ++MK L   P+++  N+++      G   
Sbjct: 475 ESGIPANQIVLTSLIKVYSKLGCFDGAKHLYKKMKDLEGGPDIIASNSMISLYADLGMIS 534

Query: 345 LARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
            A  +F  + E+G   D  +   ++ +Y       +A+++ E M+++    D + YN ++
Sbjct: 535 EAELVFKNLRENG-QADGVSFATMMYLYKSMGMLDEAIDIAEEMKQSGLLRDCVSYNKVM 593

Query: 405 NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDN------------- 451
              A  G + E   L  +M +     PD  ++  +  +   GG                 
Sbjct: 594 ACYATNGQLRECAELLHEM-IGQKLLPDGGTFKILFTVLKKGGFPSEGIAQLESAYLEGK 652

Query: 452 --------------------AIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
                               A+E  E  ++  VA++       I   G +  ID  ++ F
Sbjct: 653 PYARQAVITSIFSVVGLHALALESCESFTKAEVALDSFAYNVAIYAYGSSGEIDKALKTF 712

Query: 492 GVSIDRGVKPD 502
               D G++PD
Sbjct: 713 MKRQDEGLEPD 723



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 126/249 (50%), Gaps = 20/249 (8%)

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M K G++P   TY  ++DVYAK+G VE +L +    +  G  PD +  + + K+  + G+
Sbjct: 1   MAKNGVLPTNNTYGMLVDVYAKAGLVEALLWIKHMRL-RGLFPDEVTMNTVVKVLKDVGE 59

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAM-GKAGKP-GLARSLFDEM------VESGLT 359
           +D      ++  +  V+ + +  +++L++  G   +P      L  E+      V+ G +
Sbjct: 60  FDKAERFYKDWCAGRVELDGLELDSMLDSENGSRSEPVSFKHFLLTELFKTGGRVKIGGS 119

Query: 360 PDEKTLT----------ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCAD 409
            DE+TL            LI +YGKA   KDA E++  M ++   MD I +NT++  C  
Sbjct: 120 SDEETLVRKPCLTSTYNTLIDLYGKAGRLKDAAEVFSEMLKSGVAMDTITFNTMIFTCGS 179

Query: 410 IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVM 469
            GL+ EAE L + M+      PD  +Y   L++Y   GN++ A+E + ++  +G+  +++
Sbjct: 180 HGLLSEAESLLDKME-ERRISPDTRTYNIFLSLYADAGNINAALECYWKIRNVGLVPDIV 238

Query: 470 GCTCLIQCL 478
               ++  L
Sbjct: 239 SHRTILHIL 247



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 73/329 (22%), Positives = 152/329 (46%), Gaps = 7/329 (2%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           ++ +EM+ + + +D IT++T+I       L  EA    ++M +  + PD  TY+  L +Y
Sbjct: 153 EVFSEMLKSGVAMDTITFNTMIFTCGSHGLLSEAESLLDKMEERRISPDTRTYNIFLSLY 212

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
           A +G +   L  Y +    G  PD ++   +  +         +  V++EMK    + ++
Sbjct: 213 ADAGNINAALECYWKIRNVGLVPDIVSHRTILHILCGRNMVREVEAVIEEMKKSSQKIDV 272

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDE-MVESGLTPDEKTLTALIKIYG-KARWAKDALELW 385
                +++     G    A +L D+   + G +   K   A+I  Y  +  WA +A  ++
Sbjct: 273 HSVPGIIKMYINEGLHDRANNLLDKCQFDVGFSS--KVRAAIIDAYAERGLWA-EAEAVF 329

Query: 386 ERMRENKWPMDFIL-YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYG 444
              R+   P   +L YN ++       L ++A  LF+ M+ +    PD  +Y +++ ++ 
Sbjct: 330 YGKRDLLGPEKGVLEYNVMVKAYGKAKLYDKAFSLFKGMR-NHGTWPDEVTYNSLIQMFS 388

Query: 445 SGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR 504
            G  +D A +L +EM E G     +  + ++ C  +  ++ D V V+   +  GVKP++ 
Sbjct: 389 GGDLMDQARDLLDEMQEAGFKPQCLTFSAVMACYARLGQLSDAVDVYQEMVKAGVKPNEV 448

Query: 505 LCGCLLSVVSLCETSEDVGKVITCLQQAN 533
           + G L++  +     E+  K    ++++ 
Sbjct: 449 VYGSLINGFAEVGNVEEALKYFRMMEESG 477



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/299 (23%), Positives = 121/299 (40%), Gaps = 55/299 (18%)

Query: 213 MVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK 272
           M  N +   N TY  ++    +  L  EA+ W + M   GL PDEVT + ++ V    G+
Sbjct: 1   MAKNGVLPTNNTYGMLVDVYAKAGLV-EALLWIKHMRLRGLFPDEVTMNTVVKVLKDVGE 59

Query: 273 VEEVLSLYERGVA-----------------SGWKPDPIAF-------------------- 295
            ++    Y+   A                 +G + +P++F                    
Sbjct: 60  FDKAERFYKDWCAGRVELDGLELDSMLDSENGSRSEPVSFKHFLLTELFKTGGRVKIGGS 119

Query: 296 ----------------SVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
                           + L  ++G++G       V  EM   GV  + + +NT++   G 
Sbjct: 120 SDEETLVRKPCLTSTYNTLIDLYGKAGRLKDAAEVFSEMLKSGVAMDTITFNTMIFTCGS 179

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
            G    A SL D+M E  ++PD +T    + +Y  A     ALE + ++R      D + 
Sbjct: 180 HGLLSEAESLLDKMEERRISPDTRTYNIFLSLYADAGNINAALECYWKIRNVGLVPDIVS 239

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458
           + T+L++     +V E E + E+MK S   K D +S   ++ +Y + G  D A  L ++
Sbjct: 240 HRTILHILCGRNMVREVEAVIEEMKKSSQ-KIDVHSVPGIIKMYINEGLHDRANNLLDK 297



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 86/204 (42%), Gaps = 33/204 (16%)

Query: 219 ELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS 278
           + D ++++T++   K   + DEAI+  E M ++GL+ D V+Y+ ++  YA +G++ E   
Sbjct: 548 QADGVSFATMMYLYKSMGMLDEAIDIAEEMKQSGLLRDCVSYNKVMACYATNGQLRECAE 607

Query: 279 LYERGVASGWKPDPIAFSVL------------GKMFGESGDYDGIRYVLQE--------- 317
           L    +     PD   F +L            G    ES   +G  Y  Q          
Sbjct: 608 LLHEMIGQKLLPDGGTFKILFTVLKKGGFPSEGIAQLESAYLEGKPYARQAVITSIFSVV 667

Query: 318 -MKSLGVQP-----------NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
            + +L ++            +   YN  + A G +G+   A   F +  + GL PD  T 
Sbjct: 668 GLHALALESCESFTKAEVALDSFAYNVAIYAYGSSGEIDKALKTFMKRQDEGLEPDLVTS 727

Query: 366 TALIKIYGKARWAKDALELWERMR 389
             L+  YGKA   +    ++ +++
Sbjct: 728 INLVHCYGKAGMVEGVKRIYSQLK 751



 Score = 48.5 bits (114), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 40/190 (21%), Positives = 77/190 (40%), Gaps = 2/190 (1%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + YN  M       Q +   +L +EM+  ++  D  T+  + T  K+     E I   
Sbjct: 585 DCVSYNKVMACYATNGQLRECAELLHEMIGQKLLPDGGTFKILFTVLKKGGFPSEGIAQL 644

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           E  Y  G        + I  +++  G     L   E    +    D  A++V    +G S
Sbjct: 645 ESAYLEG--KPYARQAVITSIFSVVGLHALALESCESFTKAEVALDSFAYNVAIYAYGSS 702

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G+ D       + +  G++P+LV    L+   GKAG     + ++ ++    + P++  +
Sbjct: 703 GEIDKALKTFMKRQDEGLEPDLVTSINLVHCYGKAGMVEGVKRIYSQLKYGEIKPNDSLV 762

Query: 366 TALIKIYGKA 375
            A++  Y  A
Sbjct: 763 KAVVDAYKNA 772


>gi|223948189|gb|ACN28178.1| unknown [Zea mays]
 gi|413935735|gb|AFW70286.1| hypothetical protein ZEAMMB73_980179 [Zea mays]
          Length = 597

 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/363 (23%), Positives = 159/363 (43%), Gaps = 3/363 (0%)

Query: 180 QNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFD 239
           +N  P     YN  +  L   R  +   ++   M       +  TY+ +I    + N   
Sbjct: 235 RNGIPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTETYTLMINVYGKANQPM 294

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
            ++  F  M   G  P+  TY+A+++ +A+ G  E+   ++E    +G +PD  A++ L 
Sbjct: 295 SSLRVFREMKSVGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALM 354

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
           + +  +G   G   +   M+ +G +P+   YN L++A G+AG    A + F E+ + G+ 
Sbjct: 355 EAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAFGRAGLHQEAEAAFQELKQQGMR 414

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
           P  K+   L+  + ++       E+  ++ ++    D    N +LN     G +++ ERL
Sbjct: 415 PTMKSHMLLLSAHARSGNVARCEEVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERL 474

Query: 420 FEDMKLSDYC---KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
           F  M+  D      PD  +Y  M+N YG  G +D     F  ++  G+A +V+  T  I 
Sbjct: 475 FAAMERGDGAIAGAPDTSTYNVMVNAYGRAGYLDRMEAAFRSLAARGLAADVVTWTSRIG 534

Query: 477 CLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKL 536
              + +     +RVF   +D G  PD      LL+  S     E V  ++  + +    L
Sbjct: 535 AYARKKEYGQCLRVFEEMVDAGCYPDAGTAKVLLAACSDERQVEQVKAIVRSMHKDAKTL 594

Query: 537 VAF 539
            A 
Sbjct: 595 FAL 597



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 84/345 (24%), Positives = 160/345 (46%), Gaps = 6/345 (1%)

Query: 156 NALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVS 215
           N  + L   + W+       W+  ++ F  + I YN+ + +  +G++ QL E  A  M  
Sbjct: 141 NVAVQLRLNRQWEPIITVCEWVLRRSSFRPDIICYNLLIDA--YGQKRQLSEAEAAYMAL 198

Query: 216 NEIEL--DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKV 273
            E        TY+ ++           A      M + G+ P    Y+A LD   K+   
Sbjct: 199 LEARCVPTEDTYALLLRAYCGSGQLHRAEGVISEMQRNGIPPTATVYNAYLDGLLKARCS 258

Query: 274 EEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTL 333
           E+ + +Y+R      + +   ++++  ++G++        V +EMKS+G +PN+  Y  L
Sbjct: 259 EKAVEVYQRMKKERCRTNTETYTLMINVYGKANQPMSSLRVFREMKSVGCKPNICTYTAL 318

Query: 334 LEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKW 393
           + A  + G    A  +F+EM ++G  PD     AL++ Y +A   + A E++  M     
Sbjct: 319 VNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGC 378

Query: 394 PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAI 453
             D   YN L++     GL +EAE  F+++K     +P   S+  +L+ +   GNV    
Sbjct: 379 EPDRASYNILVDAFGRAGLHQEAEAAFQELKQQGM-RPTMKSHMLLLSAHARSGNVARCE 437

Query: 454 ELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRG 498
           E+  ++ + G+  +      ++   G+A R+DD+ R+F  +++RG
Sbjct: 438 EVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLF-AAMERG 481


>gi|357110839|ref|XP_003557223.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Brachypodium distachyon]
          Length = 897

 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 109/431 (25%), Positives = 198/431 (45%), Gaps = 12/431 (2%)

Query: 183 FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
            P +   Y+  +++    R F   +++  EM   +  ++ +TY+ +I+   R    +EA 
Sbjct: 241 IPPDVYTYSTFLEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAF 300

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
            + E M   GL PD  TY A+++   K G+++E  +L +    SG KP+ + ++ L   F
Sbjct: 301 GFKEEMVDYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATLVDGF 360

Query: 303 GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
            + G       +L EM S GVQPN ++Y+ L+  + K G+ G A  L +EM++ G  PD 
Sbjct: 361 MKEGKAAEAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKVGHRPDT 420

Query: 363 KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED 422
            T   L++ + +      A EL   MR +    +   Y  ++N     G  +EA  L E+
Sbjct: 421 FTYHPLMQGHFQHYDKDGAFELLNEMRNSGILPNAYTYGIMINGLCQNGESKEAGNLLEE 480

Query: 423 MKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKAR 482
           M +S+  KP+ + Y  ++  +   G++  A E  E M++  V  ++     LI+ L    
Sbjct: 481 M-ISEGLKPNAFMYAPLIIGHSKEGHISLACESLENMTKANVLPDLFCYNSLIKGLSTVG 539

Query: 483 RIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQA-----NPKLV 537
           RI++    +     RG+ PD+     L+     C+T  ++ K    LQQ       P   
Sbjct: 540 RIEEAEEYYAQVQKRGLVPDEFTYSGLIH--GYCKT-RNLEKADQLLQQMLNSGLKPNAD 596

Query: 538 AFLNLIED--NSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYL 595
            + +L+E    S   E +    ++++   +      +   + ++ R+ N+ E A  +L  
Sbjct: 597 TYTDLLEGYFKSNDHEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENM-EVAFMVLTE 655

Query: 596 GTLYGLYPGLH 606
               GL P LH
Sbjct: 656 VEKNGLVPDLH 666



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 148/300 (49%), Gaps = 7/300 (2%)

Query: 179 SQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLF 238
           S+ L P   ++  + +   + G      E L N M    +  D   Y+++I         
Sbjct: 483 SEGLKPNAFMYAPLIIGHSKEGHISLACESLEN-MTKANVLPDLFCYNSLIKGLSTVGRI 541

Query: 239 DEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
           +EA E++ ++ K GL+PDE TYS ++  Y K+  +E+   L ++ + SG KP+   ++ L
Sbjct: 542 EEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTRNLEKADQLLQQMLNSGLKPNADTYTDL 601

Query: 299 GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
            + + +S D++ +  +LQ M   G +P+  +Y  ++  + ++    +A  +  E+ ++GL
Sbjct: 602 LEGYFKSNDHEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGL 661

Query: 359 TPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAER 418
            PD    ++LI    K    + A+ L + M +       + YN L++     G +  A  
Sbjct: 662 VPDLHIYSSLISGLCKMADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARN 721

Query: 419 LFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA-----INVMGCTC 473
           +F+ + L+    P+  +YTA+++     G++ +A +L+++M + G+A      NV+   C
Sbjct: 722 VFDSI-LAKGLLPNCVTYTALIDGNCKNGDITDAFDLYKDMLDRGIAPDAFVYNVLATGC 780



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 80/365 (21%), Positives = 161/365 (44%), Gaps = 5/365 (1%)

Query: 141 FLRAITEIPHQP-TRENALLILNSLKFWQKSYFF--FNWIKSQNLFPMETIFYNVTMKSL 197
            L  + ++ H+P T     L+    + + K   F   N +++  + P     Y + +  L
Sbjct: 407 LLNEMIKVGHRPDTFTYHPLMQGHFQHYDKDGAFELLNEMRNSGILP-NAYTYGIMINGL 465

Query: 198 RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDE 257
               + +    L  EM+S  ++ +   Y+ +I    +      A E  E M K  ++PD 
Sbjct: 466 CQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGHISLACESLENMTKANVLPDL 525

Query: 258 VTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQE 317
             Y++++   +  G++EE    Y +    G  PD   +S L   + ++ + +    +LQ+
Sbjct: 526 FCYNSLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTRNLEKADQLLQQ 585

Query: 318 MKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARW 377
           M + G++PN   Y  LLE   K+       S+   M+ SG  PD      +I+   ++  
Sbjct: 586 MLNSGLKPNADTYTDLLEGYFKSNDHEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSEN 645

Query: 378 AKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYT 437
            + A  +   + +N    D  +Y++L++    +  +E+A  L ++M   +  +P    Y 
Sbjct: 646 MEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKMADMEKAVGLLDEMA-KEGLEPGIVCYN 704

Query: 438 AMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDR 497
           A+++ +   G++  A  +F+ +   G+  N +  T LI    K   I D   ++   +DR
Sbjct: 705 ALIDGFCRSGDISRARNVFDSILAKGLLPNCVTYTALIDGNCKNGDITDAFDLYKDMLDR 764

Query: 498 GVKPD 502
           G+ PD
Sbjct: 765 GIAPD 769



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 87/346 (25%), Positives = 151/346 (43%), Gaps = 38/346 (10%)

Query: 181 NLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDE 240
           N+ P +   YN  +K L    + +  E+   ++    +  D  TYS +I    +    ++
Sbjct: 520 NVLP-DLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTRNLEK 578

Query: 241 AIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD--------- 291
           A +  ++M  +GL P+  TY+ +L+ Y KS   E+V S+ +  + SG KPD         
Sbjct: 579 ADQLLQQMLNSGLKPNADTYTDLLEGYFKSNDHEKVSSILQSMLGSGDKPDNHIYGIVIR 638

Query: 292 --------PIAFSVLGKM------------------FGESGDYDGIRYVLQEMKSLGVQP 325
                    +AF VL ++                    +  D +    +L EM   G++P
Sbjct: 639 NLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKMADMEKAVGLLDEMAKEGLEP 698

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
            +V YN L++   ++G    AR++FD ++  GL P+  T TALI    K     DA +L+
Sbjct: 699 GIVCYNALIDGFCRSGDISRARNVFDSILAKGLLPNCVTYTALIDGNCKNGDITDAFDLY 758

Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445
           + M +     D  +YN L   C+D   +E+A  L E+M    Y     +S   ++  +  
Sbjct: 759 KDMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRGYAHVSLFS--TLVRGFCK 816

Query: 446 GGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
            G +    +L   M +  +  N      +I   GKA ++ +  RVF
Sbjct: 817 RGRLQETEKLLHVMMDREIVPNAQTVENVITEFGKAGKLCEAHRVF 862



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 97/403 (24%), Positives = 162/403 (40%), Gaps = 57/403 (14%)

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M   GL P     + +L    ++  +E V  L      +G  PD   +S   +   ++ D
Sbjct: 201 MGDLGLAPTRRCCNGLLKDLLRADAMELVWKLKGFMEGAGIPPDVYTYSTFLEAHCKARD 260

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
           +D  + V +EM+      N V YN ++  + ++G    A    +EMV+ GL+PD  T  A
Sbjct: 261 FDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGA 320

Query: 368 LIKIYGKARWAKDALELWER--------------------MRENKWPMDF---------- 397
           L+    K    K+A  L +                     M+E K    F          
Sbjct: 321 LMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATLVDGFMKEGKAAEAFDILNEMISAG 380

Query: 398 -----ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNA 452
                I+Y+ L+     IG +  A +L  +M    + +PD ++Y  ++  +    + D A
Sbjct: 381 VQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKVGH-RPDTFTYHPLMQGHFQHYDKDGA 439

Query: 453 IELFEEMSELGVAINVMGCTCLIQCL---GKARRIDDLVRVFGVSIDRGVKPDDRLCGCL 509
            EL  EM   G+  N      +I  L   G+++   +L+      I  G+KP+  +   L
Sbjct: 440 FELLNEMRNSGILPNAYTYGIMINGLCQNGESKEAGNLLEEM---ISEGLKPNAFMYAPL 496

Query: 510 L------SVVSL-CETSEDVGKVITCLQQANPKLVAFLNLIEDNST--GFENIKEEFRNV 560
           +        +SL CE+ E++ K         P L  + +LI+  ST    E  +E +  V
Sbjct: 497 IIGHSKEGHISLACESLENMTKA-----NVLPDLFCYNSLIKGLSTVGRIEEAEEYYAQV 551

Query: 561 IKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYP 603
            K   V     +   +   C+ RNL E+A +LL      GL P
Sbjct: 552 QKRGLVPDEFTYSGLIHGYCKTRNL-EKADQLLQQMLNSGLKP 593



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 96/209 (45%), Gaps = 3/209 (1%)

Query: 295 FSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMV 354
             VL   + ++G       V+  M  LG+ P     N LL+ + +A    L   L   M 
Sbjct: 178 LDVLVDTYKKNGSVRTAAQVVLMMGDLGLAPTRRCCNGLLKDLLRADAMELVWKLKGFME 237

Query: 355 ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
            +G+ PD  T +  ++ + KAR    A +++E MR     M+ + YN +++     G VE
Sbjct: 238 GAGIPPDVYTYSTFLEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVE 297

Query: 415 EAERLFEDMKLSDY-CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTC 473
           EA    E+M   DY   PD ++Y A++N    GG +  A  L +EMS  G+  NV+    
Sbjct: 298 EAFGFKEEM--VDYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYAT 355

Query: 474 LIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           L+    K  +  +   +    I  GV+P+
Sbjct: 356 LVDGFMKEGKAAEAFDILNEMISAGVQPN 384



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/179 (22%), Positives = 71/179 (39%), Gaps = 34/179 (18%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L +EM    +E   + Y+ +I    R      A   F+ +   GL+P+ VTY+A++D   
Sbjct: 687 LLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLLPNCVTYTALIDGNC 746

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG------ 322
           K+G + +   LY+  +  G  PD   ++VL     ++ D +   ++ +EM + G      
Sbjct: 747 KNGDITDAFDLYKDMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRGYAHVSL 806

Query: 323 ----------------------------VQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
                                       + PN      ++   GKAGK   A  +F E+
Sbjct: 807 FSTLVRGFCKRGRLQETEKLLHVMMDREIVPNAQTVENVITEFGKAGKLCEAHRVFAEL 865


>gi|115466932|ref|NP_001057065.1| Os06g0199100 [Oryza sativa Japonica Group]
 gi|51091829|dbj|BAD36643.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113595105|dbj|BAF18979.1| Os06g0199100 [Oryza sativa Japonica Group]
          Length = 1283

 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/361 (24%), Positives = 172/361 (47%), Gaps = 7/361 (1%)

Query: 183 FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKR--CNLFDE 240
            P   +F  +     R GR F    QL + M   +IE D ++++T+I    +  C     
Sbjct: 58  LPTVQVFNAMMGVYARSGR-FDDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCLAAGV 116

Query: 241 AIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGK 300
           A+E    + + GL PD +TY+ ++   ++   +++ ++++E  +AS  +PD   ++ +  
Sbjct: 117 ALELLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVS 176

Query: 301 MFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTP 360
           + G  G       + +E+   G QP+ V YN+LL A  K G       + +E+V++G   
Sbjct: 177 VHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRK 236

Query: 361 DEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLF 420
           D  T   +I +YGK      AL L++ MR      D + Y  L++    +  + EA ++ 
Sbjct: 237 DGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVL 296

Query: 421 EDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK 480
           E+M  +   KP   +++A++  Y   G  D+A   F+ M E GV  + +    ++    +
Sbjct: 297 EEMADAG-LKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFAR 355

Query: 481 ARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQ---QANPKLV 537
           +     L+ ++   I  G KPDD L   LL+ ++     +++  VI  ++   + NP ++
Sbjct: 356 SDETRKLMVLYRAMIKDGYKPDDGLYQVLLAALAKGNEHDEIEGVIQDMEAVFEMNPLVI 415

Query: 538 A 538
           +
Sbjct: 416 S 416



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 167/352 (47%), Gaps = 12/352 (3%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
             + ++   L P + I YN  + +   G        +  EM+++E   D  TY+ +++  
Sbjct: 120 LLHEVRQAGLRP-DAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVSVH 178

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            RC    EA   F+ + + G  PD VTY+++L  +AK G VE V  + E  V +G++ D 
Sbjct: 179 GRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDG 238

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           I ++ +  M+G+ G  D    +  EM+++G  P+ V Y  L++++GK  +   A  + +E
Sbjct: 239 ITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEE 298

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M ++GL P   T +ALI  Y K+    DA   ++RM E+    D + Y  +L++ A    
Sbjct: 299 MADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSDE 358

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
             +   L+  M + D  KPD+  Y  +L     G   D    + ++M     A+  M   
Sbjct: 359 TRKLMVLYRAM-IKDGYKPDDGLYQVLLAALAKGNEHDEIEGVIQDME----AVFEMNPL 413

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGK 524
            +   L KA  I     +   +  +G +PD +      S++S+ +  E +GK
Sbjct: 414 VISSILIKAECISQGASLLKRACLQGYEPDGK------SLLSILDAYEKMGK 459



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 117/535 (21%), Positives = 231/535 (43%), Gaps = 16/535 (2%)

Query: 177  IKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCN 236
            IK   L  +E++  N  M++L    +   +  +  E+   +I++   T   ++    +  
Sbjct: 649  IKKGPLPTVESV--NGMMRALIVDGRLDELYVVVQELQDLDIKISKSTVLLMLEAFAKAG 706

Query: 237  LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS 296
               E ++ +  M   G +P+   Y  ++ +   + +  +V  +      +G+KPD +  +
Sbjct: 707  DVFEVMKIYNGMKAAGYLPNMHLYRIMISLLCHNKRFRDVELMVAEMEGAGFKPDLVVLN 766

Query: 297  VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356
             L  M+  +G++D    V   +   G++P+   YNTL+    +  +P    +L  EM + 
Sbjct: 767  TLLLMYTGTGNFDRTIEVYHSILEAGLEPDEDTYNTLIVMYSRNFRPEEGFTLLYEMGKR 826

Query: 357  GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEA 416
            GLTP  ++   L+   GKA+  + A  L+E MR   + ++  +Y+ ++ +  +     +A
Sbjct: 827  GLTPKLESYKILLAASGKAKLWEQADLLFEEMRTKGYRLNRSIYHMMMKIYRNARNHSKA 886

Query: 417  ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
            E L   MK  D  +P   +   ++  YG+ G+ D A ++   +    + I+ +  + ++ 
Sbjct: 887  EHLLSAMK-EDGIEPTIATMHILMTSYGTSGHPDEAEKVLNSLKSSNLEISTLPYSTVLD 945

Query: 477  CLGKARRID-DLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPK 535
               + R     + ++  +  D GV+PD ++    +   SLCE ++D   ++  LQ     
Sbjct: 946  AYLRNRDYSLGITKLLEMKRD-GVEPDHQVWTSFIRAASLCEQTDDAILLLKSLQDCGFD 1004

Query: 536  LVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYL 595
            L   L L E  S+ F  + + F   +   E  A   F N L D+         A  +  L
Sbjct: 1005 LPIRL-LTERTSSLFTEV-DSFLEKLGTLEDSASLNFVNALEDLLWAFERRATASWIFQL 1062

Query: 596  GTLYGLYPGLHNKTL----DEWSLDVRSLSVGAAQTALEEWMWTLAKIVLR-EEVLPQLF 650
                 +Y   H+        +W  D+R LS GAA  AL  W+  +    L+     P+  
Sbjct: 1063 AVKRSIY---HHNIFRVEEKDWGADLRKLSAGAALVALTLWLDQMQDASLQGAPESPKSI 1119

Query: 651  LAETGTGTHKFSQGLATAFASHVNKLAAPFRQSEGKAGCFVATREDLVSWVQARP 705
            +  TG G +     L     +++ ++ +PF     ++G FV     L  W++  P
Sbjct: 1120 VLVTGEGEYNMVS-LRKTIRAYLLEMGSPFLPCRSRSGRFVVKAYSLKMWLKDSP 1173


>gi|168047804|ref|XP_001776359.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672319|gb|EDQ58858.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 499

 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 100/376 (26%), Positives = 172/376 (45%), Gaps = 42/376 (11%)

Query: 166 FWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITY 225
           + QK+   +  +    L P +T  +NV M + +  ++   + +L  EM +     + ITY
Sbjct: 104 YTQKALAVYRVMGQSGLRP-DTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITY 162

Query: 226 STIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVA 285
           S +I    +C   ++A++ F  M   G  P+  TY++++D   KSG V++   L+E   +
Sbjct: 163 SILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTS 222

Query: 286 SGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGL 345
            G     + ++ L    G SG  D    + +EM S G+QP+ V + +L+  +G AG+   
Sbjct: 223 EGLVATRVVYNSLIHGLGRSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGRASE 282

Query: 346 AR-----------------------------------SLFDEMVESGLTPDEKTLTALIK 370
           AR                                    +F E+ E GL PD  T  AL+ 
Sbjct: 283 ARRIFQEARDVGCALDVNLYNVLIDTLCKSKRLDEAWEIFGELEEDGLVPDVYTFNALMD 342

Query: 371 IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCK 430
              K+    DA  L   M+      D  +YNTL++     G VEEA +L  +M+   Y +
Sbjct: 343 GLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDGLRKSGRVEEAGQLLLEMQSLGY-E 401

Query: 431 PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRV 490
           PD  +Y  +++    GG +++A+ LFEE+S  G A N +    ++  L  A R+D+  ++
Sbjct: 402 PDVVTYNTLIDESCKGGRIEDALRLFEEISAKGFA-NTVTYNTILNGLCMAGRVDEAYKL 460

Query: 491 FGV----SIDRGVKPD 502
           F      ++D  + PD
Sbjct: 461 FNGMKQETVDGVIDPD 476



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 83/339 (24%), Positives = 155/339 (45%), Gaps = 3/339 (0%)

Query: 213 MVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK 272
           M  +   L    Y+++I    +     +A+  +  M ++GL PD  T++ +++ + K+ +
Sbjct: 80  MEGHRCALTASAYNSLIDAFVKAGYTQKALAVYRVMGQSGLRPDTYTFNVLMNAFKKAKR 139

Query: 273 VEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNT 332
           V+ V  L+E        P+ I +S+L     + G  +    V  +MKS G +PN+  Y +
Sbjct: 140 VDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTS 199

Query: 333 LLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENK 392
           +++ +GK+G    A  LF+EM   GL        +LI   G++  A  A +L+  M    
Sbjct: 200 MIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREMLSKG 259

Query: 393 WPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNA 452
              D + + +L+      G   EA R+F++ +    C  D   Y  +++       +D A
Sbjct: 260 LQPDHVTFTSLVYGLGVAGRASEARRIFQEAR-DVGCALDVNLYNVLIDTLCKSKRLDEA 318

Query: 453 IELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSV 512
            E+F E+ E G+  +V     L+  L K+ RI D   + G     G  PD  +   L+  
Sbjct: 319 WEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDG 378

Query: 513 VSLCETSEDVGKVITCLQQAN--PKLVAFLNLIEDNSTG 549
           +      E+ G+++  +Q     P +V +  LI+++  G
Sbjct: 379 LRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLIDESCKG 417



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 146/333 (43%), Gaps = 12/333 (3%)

Query: 118 NPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTRENALLI------LNSLKFWQKSY 171
           +P V    +    +  C   E+A L+   ++  +  R N          L       K++
Sbjct: 156 SPNVITYSILIDAVCKCGGVEKA-LKVFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAF 214

Query: 172 FFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITC 231
           F F  + S+ L     ++ ++     R GR      +L  EM+S  ++ D++T+++++  
Sbjct: 215 FLFEEMTSEGLVATRVVYNSLIHGLGRSGRA-DAAAKLFREMLSKGLQPDHVTFTSLVYG 273

Query: 232 AKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291
                   EA   F+     G   D   Y+ ++D   KS +++E   ++      G  PD
Sbjct: 274 LGVAGRASEARRIFQEARDVGCALDVNLYNVLIDTLCKSKRLDEAWEIFGELEEDGLVPD 333

Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
              F+ L     +SG       +L +MK  G  P++ VYNTL++ + K+G+   A  L  
Sbjct: 334 VYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDGLRKSGRVEEAGQLLL 393

Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411
           EM   G  PD  T   LI    K    +DAL L+E +    +  + + YNT+LN     G
Sbjct: 394 EMQSLGYEPDVVTYNTLIDESCKGGRIEDALRLFEEISAKGFA-NTVTYNTILNGLCMAG 452

Query: 412 LVEEAERLFEDMK---LSDYCKPDNYSYTAMLN 441
            V+EA +LF  MK   +     PD  +YT +LN
Sbjct: 453 RVDEAYKLFNGMKQETVDGVIDPDFVTYTTLLN 485



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 110/211 (52%), Gaps = 1/211 (0%)

Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
           P  F  L + +  +G  +     L+ M+          YN+L++A  KAG    A +++ 
Sbjct: 54  PRIFIELARGYASAGLLEKSVEALKRMEGHRCALTASAYNSLIDAFVKAGYTQKALAVYR 113

Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411
            M +SGL PD  T   L+  + KA+      +L+E M+      + I Y+ L++     G
Sbjct: 114 VMGQSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCG 173

Query: 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC 471
            VE+A ++F DMK S  C+P+ ++YT+M++  G  G+VD A  LFEEM+  G+    +  
Sbjct: 174 GVEKALKVFLDMK-SRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVY 232

Query: 472 TCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
             LI  LG++ R D   ++F   + +G++PD
Sbjct: 233 NSLIHGLGRSGRADAAAKLFREMLSKGLQPD 263



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 86/181 (47%), Gaps = 1/181 (0%)

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
           G  P++    TL+E +G A +   A  +  E+ +S      +    L + Y  A   + +
Sbjct: 14  GGVPSVRACTTLVEMLGIARRFNEAEEVLAEVEKSRYILQPRIFIELARGYASAGLLEKS 73

Query: 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
           +E  +RM  ++  +    YN+L++     G  ++A  ++  M  S   +PD Y++  ++N
Sbjct: 74  VEALKRMEGHRCALTASAYNSLIDAFVKAGYTQKALAVYRVMGQSGL-RPDTYTFNVLMN 132

Query: 442 IYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
            +     VD+  +LFEEM     + NV+  + LI  + K   ++  ++VF     RG +P
Sbjct: 133 AFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRP 192

Query: 502 D 502
           +
Sbjct: 193 N 193



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 62/133 (46%), Gaps = 5/133 (3%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D   Y+T+I   ++    +EA +    M   G  PD VTY+ ++D   K G++E+ L L+
Sbjct: 368 DVTVYNTLIDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLIDESCKGGRIEDALRLF 427

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQ----PNLVVYNTLLEA 336
           E   A G+  + + ++ +      +G  D    +   MK   V     P+ V Y TLL  
Sbjct: 428 EEISAKGF-ANTVTYNTILNGLCMAGRVDEAYKLFNGMKQETVDGVIDPDFVTYTTLLNG 486

Query: 337 MGKAGKPGLARSL 349
             +AG   LA SL
Sbjct: 487 ARQAGLSELANSL 499


>gi|449485308|ref|XP_004157129.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g31850, chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/333 (27%), Positives = 163/333 (48%), Gaps = 8/333 (2%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F  +K+    P + I+  +  K   FG      ++  ++M ++    D +T++ ++   
Sbjct: 319 LFVKMKANGHKPDQVIYITLLDKFNDFG-DLDTFKEFWSQMEADGYMPDVVTFTILVDVL 377

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +   FDEA   F+ M K G++P+  TY+ ++    ++G++E+ L L +   + G +P  
Sbjct: 378 CKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLDTMESVGVQPTA 437

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
             +      FG+SG+        ++MK+ G+ PN+V  N  L ++ + G+   A+++F+ 
Sbjct: 438 YTYITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNG 497

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           + E+GL PD  T   ++K Y K     +A+ L   M  N    D I+ N+L++     G 
Sbjct: 498 LRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGR 557

Query: 413 VEEAERLFE---DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVM 469
           V+EA ++F+   DMKLS    P   +Y  +L+  G  G V  AIELFE M     + N +
Sbjct: 558 VDEAWQMFDRMKDMKLS----PTVVTYNTLLSGLGKEGRVQKAIELFESMIXKKCSPNTI 613

Query: 470 GCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
               L+ C  K   ++  +++F        KPD
Sbjct: 614 SFNTLLDCFCKNDEVELALKMFSKMTVMDCKPD 646



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 161/308 (52%), Gaps = 2/308 (0%)

Query: 161  LNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIEL 220
            L  + + +K++  F  +K+    P    F  +     + G+  +L E L  EM+S   + 
Sbjct: 798  LLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFE-LYKEMISRRCKP 856

Query: 221  DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
            D ITY+ +I+   + N  D+A+++F  +  +   P   TY  ++D  AK G++EE + L+
Sbjct: 857  DAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLF 916

Query: 281  ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
            E     G KP+   F++L   +G+ GD +    + + M + G++P+L  Y  L++ +  A
Sbjct: 917  EEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLA 976

Query: 341  GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
            G+   A   F+E+  +GL PD      +I   GK++  ++AL L+  MR      D   Y
Sbjct: 977  GRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTY 1036

Query: 401  NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
            N+L+      G+VE+A+R++E+++L+   +PD ++Y A++  Y    N ++A  +++ M 
Sbjct: 1037 NSLMLNLGLAGMVEQAKRMYEELQLAGL-EPDVFTYNALIRGYSLSENPEHAYTVYKNMM 1095

Query: 461  ELGVAINV 468
              G   N+
Sbjct: 1096 VDGCNPNI 1103



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 80/281 (28%), Positives = 134/281 (47%), Gaps = 1/281 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D +TY+ +I         + A E F +M   G  PD+V Y  +LD +   G ++     +
Sbjct: 296 DLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFW 355

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
            +  A G+ PD + F++L  +  ++ D+D        M+  G+ PNL  YNTL+  + +A
Sbjct: 356 SQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRA 415

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G+   A  L D M   G+ P   T    I  +GK+     A+E +E+M+      + +  
Sbjct: 416 GRIEDALKLLDTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVAC 475

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           N  L   A++G + EA+ +F  ++  +   PD+ +Y  M+  Y   G VD A+ L  EM 
Sbjct: 476 NASLYSLAEMGRLREAKTMFNGLR-ENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMI 534

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
             G   +V+    LI  L KA R+D+  ++F    D  + P
Sbjct: 535 RNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSP 575



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/311 (26%), Positives = 147/311 (47%), Gaps = 1/311 (0%)

Query: 191 NVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYK 250
           N  ++ LR   + + +  +   M    I  D  TY TI           +      +M K
Sbjct: 126 NFMLEFLRVHDKVEDMAAVFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRK 185

Query: 251 TGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDG 310
            G + +  +Y+ ++ +  +SG   E L +Y R V+ G KP    +S L    G+  D + 
Sbjct: 186 AGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEM 245

Query: 311 IRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK 370
           +  +L+EM+ LG++PN+  +   +  +G+AGK   A  +F  M + G  PD  T T LI 
Sbjct: 246 VMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLID 305

Query: 371 IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCK 430
               A   ++A EL+ +M+ N    D ++Y TLL+   D G ++  +  +  M+   Y  
Sbjct: 306 ALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGY-M 364

Query: 431 PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRV 490
           PD  ++T ++++     + D A   F+ M + G+  N+     LI  L +A RI+D +++
Sbjct: 365 PDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKL 424

Query: 491 FGVSIDRGVKP 501
                  GV+P
Sbjct: 425 LDTMESVGVQP 435



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 84/348 (24%), Positives = 151/348 (43%), Gaps = 36/348 (10%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           Y    K+L      + +  + N+M      L+  +Y+ +I    +     EA+E + RM 
Sbjct: 160 YLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMV 219

Query: 250 KTGLMPDEVTYSAIL--------------------------DVY---------AKSGKVE 274
             GL P   TYSA++                          +VY          ++GK++
Sbjct: 220 SEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKID 279

Query: 275 EVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLL 334
           E   ++ R    G  PD + ++VL      +G  +  + +  +MK+ G +P+ V+Y TLL
Sbjct: 280 EAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLL 339

Query: 335 EAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWP 394
           +     G     +  + +M   G  PD  T T L+ +  KAR   +A   ++ MR+    
Sbjct: 340 DKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGIL 399

Query: 395 MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIE 454
            +   YNTL+      G +E+A +L + M+ S   +P  Y+Y   ++ +G  G    A+E
Sbjct: 400 PNLHTYNTLICGLLRAGRIEDALKLLDTME-SVGVQPTAYTYITFIDYFGKSGETGKAVE 458

Query: 455 LFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            FE+M   G+  N++ C   +  L +  R+ +   +F    + G+ PD
Sbjct: 459 TFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPD 506



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 139/297 (46%), Gaps = 1/297 (0%)

Query: 224  TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
            +Y+ +I      +  ++A + F+ M   G  PD  T++ +L V+ KSGK+ E+  LY+  
Sbjct: 790  SYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEM 849

Query: 284  VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
            ++   KPD I ++++     +S + D       ++ S   +P    Y  L++ + K G+ 
Sbjct: 850  ISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRL 909

Query: 344  GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
              A  LF+EM + G  P+      LI  YGK    + A +L++RM       D   Y  L
Sbjct: 910  EEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTIL 969

Query: 404  LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
            ++     G V+EA   F ++K S    PD  +Y  ++N  G    ++ A+ L+ EM   G
Sbjct: 970  VDCLCLAGRVDEALYYFNELK-STGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRG 1028

Query: 464  VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSE 520
            +  ++     L+  LG A  ++   R++      G++PD      L+   SL E  E
Sbjct: 1029 IVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSENPE 1085



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 87/346 (25%), Positives = 161/346 (46%), Gaps = 8/346 (2%)

Query: 229  ITCAKRCNLFDEAIEWFERMYKT-GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
            + C  +  L+  A + F++  K  G+ P   +Y+ ++    +    E+   L++     G
Sbjct: 761  VLCKHKRELY--AYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVG 818

Query: 288  WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
              PD   F++L  + G+SG    +  + +EM S   +P+ + YN ++ ++ K+     A 
Sbjct: 819  CAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKAL 878

Query: 348  SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
              F ++V S   P  +T   LI    K    ++A+ L+E M +     +  ++N L+N  
Sbjct: 879  DFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGY 938

Query: 408  ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
              IG  E A +LF+ M +++  +PD  SYT +++     G VD A+  F E+   G+  +
Sbjct: 939  GKIGDTETACQLFKRM-VNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPD 997

Query: 468  VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVIT 527
             +    +I  LGK++R+++ + ++    +RG+ PD      L+  + L    E   ++  
Sbjct: 998  FIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYE 1057

Query: 528  CLQQAN--PKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRP 571
             LQ A   P +  +  LI   S   EN  E    V K+  VD   P
Sbjct: 1058 ELQLAGLEPDVFTYNALIRGYSLS-EN-PEHAYTVYKNMMVDGCNP 1101



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 102/408 (25%), Positives = 165/408 (40%), Gaps = 77/408 (18%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           QK+   F  +  +   P  TI +N  +       + +L  ++ ++M   + + D +TY+T
Sbjct: 594 QKAIELFESMIXKKCSP-NTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNT 652

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS-----LYE- 281
           +I    + N  + A  WF    K  + PD VT   +L    K G++ + +S     +Y+ 
Sbjct: 653 VIYGLIKENKVNHAF-WFFHQLKKSMHPDHVTICTLLPGLVKCGQIGDAISIARDFMYQV 711

Query: 282 --RGVASGWKPDPIAFSVLGKM-----FGESGDYDGI--------------------RYV 314
             R   S W+       V  +M     F E    +GI                     Y 
Sbjct: 712 RFRVNRSFWEDLMGGTLVEAEMDKAIIFAEELVLNGICREDSFLIPLVRVLCKHKRELYA 771

Query: 315 LQEM----KSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK 370
            Q      K LG+ P L  YN L+  + +      A  LF +M   G  PD  T   L+ 
Sbjct: 772 YQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLA 831

Query: 371 IYGKARWAKDALELWERMRENKWPMDFILYNT---------------------------- 402
           ++GK+    +  EL++ M   +   D I YN                             
Sbjct: 832 VHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRP 891

Query: 403 -------LLNMCADIGLVEEAERLFEDMKLSDY-CKPDNYSYTAMLNIYGSGGNVDNAIE 454
                  L++  A +G +EEA RLFE+M  SDY CKP+   +  ++N YG  G+ + A +
Sbjct: 892 TPRTYGPLIDGLAKVGRLEEAMRLFEEM--SDYGCKPNCAIFNILINGYGKIGDTETACQ 949

Query: 455 LFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           LF+ M   G+  ++   T L+ CL  A R+D+ +  F      G+ PD
Sbjct: 950 LFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPD 997



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 88/402 (21%), Positives = 171/402 (42%), Gaps = 48/402 (11%)

Query: 142 LRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGR 201
           ++A   +P+      +L  L  +   +++   FN ++   L P +++ YN+ MK      
Sbjct: 463 MKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAP-DSVTYNMMMKCYSKVG 521

Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS 261
           Q      L +EM+ N  E D I  +++I    +    DEA + F+RM    L P  VTY+
Sbjct: 522 QVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYN 581

Query: 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
            +L    K G+V++ + L+E  +     P+ I+F+ L   F ++ + +    +  +M  +
Sbjct: 582 TLLSGLGKEGRVQKAIELFESMIXKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVM 641

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
             +P+++ YNT++  + K  K   A   F ++ +S + PD  T+  L+    K     DA
Sbjct: 642 DCKPDVLTYNTVIYGLIKENKVNHAFWFFHQLKKS-MHPDHVTICTLLPGLVKCGQIGDA 700

Query: 382 LELWE------RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNY- 434
           + +        R R N+   + ++  TL+    D  ++       E++ L+  C+ D++ 
Sbjct: 701 ISIARDFMYQVRFRVNRSFWEDLMGGTLVEAEMDKAII-----FAEELVLNGICREDSFL 755

Query: 435 ----------------------------------SYTAMLNIYGSGGNVDNAIELFEEMS 460
                                             SY  ++         + A +LF++M 
Sbjct: 756 IPLVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMK 815

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            +G A +      L+   GK+ +I +L  ++   I R  KPD
Sbjct: 816 NVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPD 857



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 80/161 (49%)

Query: 208  QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
            QL   MV+  I  D  +Y+ ++ C       DEA+ +F  +  TGL PD + Y+ I++  
Sbjct: 949  QLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGL 1008

Query: 268  AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
             KS ++EE L+LY      G  PD   ++ L    G +G  +  + + +E++  G++P++
Sbjct: 1009 GKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDV 1068

Query: 328  VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
              YN L+     +  P  A +++  M+  G  P+  T   L
Sbjct: 1069 FTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTYAQL 1109



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/249 (22%), Positives = 110/249 (44%), Gaps = 2/249 (0%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           F  +K++ + P   +  N ++ SL    + +  + + N +  N +  D++TY+ ++ C  
Sbjct: 460 FEKMKAKGIVP-NIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYS 518

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
           +    DEA+     M + G  PD +  ++++D   K+G+V+E   +++R       P  +
Sbjct: 519 KVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVV 578

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
            ++ L    G+ G       + + M      PN + +NTLL+   K  +  LA  +F +M
Sbjct: 579 TYNTLLSGLGKEGRVQKAIELFESMIXKKCSPNTISFNTLLDCFCKNDEVELALKMFSKM 638

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
                 PD  T   +I    K      A   + +++++  P D +   TLL      G +
Sbjct: 639 TVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQLKKSMHP-DHVTICTLLPGLVKCGQI 697

Query: 414 EEAERLFED 422
            +A  +  D
Sbjct: 698 GDAISIARD 706



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 126/284 (44%), Gaps = 14/284 (4%)

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
           N +LE +    K     ++F+ M +  +  D  T   + K        +    +  +MR+
Sbjct: 126 NFMLEFLRVHDKVEDMAAVFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRK 185

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
             + ++   YN L+++    G   EA  ++  M +S+  KP   +Y+A++   G   + +
Sbjct: 186 AGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRM-VSEGLKPSLKTYSALMVALGKKRDSE 244

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
             + L +EM +LG+  NV   T  I+ LG+A +ID+   +F    D G  PD  L    +
Sbjct: 245 MVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPD--LVTYTV 302

Query: 511 SVVSLCETSE-DVGKVITCLQQAN---PKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEV 566
            + +LC   + +  K +    +AN   P  V ++ L+ D    F ++ + F+      E 
Sbjct: 303 LIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLL-DKFNDFGDL-DTFKEFWSQMEA 360

Query: 567 DARRPFC---NCLIDI-CRNRNLNERAHELLYLGTLYGLYPGLH 606
           D   P       L+D+ C+ R+ +E A     +    G+ P LH
Sbjct: 361 DGYMPDVVTFTILVDVLCKARDFDE-AFATFDVMRKQGILPNLH 403


>gi|414871539|tpg|DAA50096.1| TPA: ATP binding protein [Zea mays]
          Length = 692

 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/371 (26%), Positives = 169/371 (45%), Gaps = 40/371 (10%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + YN  +K L   +++  +++L  EMV      + +T++T+I+   R  LF+   E  
Sbjct: 263 DVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVL 322

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP--------------- 290
            +M + G  PD   Y+ I+D   K G +E    +  R  + G KP               
Sbjct: 323 AQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSA 382

Query: 291 --------------------DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
                               D + F++L   F ++G  D +  +L++M   G  P+++ Y
Sbjct: 383 ERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITY 442

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA-RWAKDALELWERMR 389
            T++    K G    A  L   M   G  P+  + T ++K    A RW  DA +L  +M 
Sbjct: 443 TTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWV-DAEDLMSQMI 501

Query: 390 ENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNV 449
           +   P++ I +NTL+N     GLVE+A  L + M L + C PD  SY+ +++  G  G  
Sbjct: 502 QQGCPLNPITFNTLINFLCKKGLVEQAIELLKQM-LVNGCSPDLISYSTVIDGLGKAGKT 560

Query: 450 DNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCL 509
           D A+EL   M   G++ N +  + +   L +  RI+ ++++F    D  ++ D  L   +
Sbjct: 561 DEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAV 620

Query: 510 LSVVSLCETSE 520
           +S  SLC+  E
Sbjct: 621 IS--SLCKRGE 629



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 78/331 (23%), Positives = 149/331 (45%), Gaps = 37/331 (11%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           + ++   N + S  L P   + YN  +K L    +++  E+L  EM   +  LD++T++ 
Sbjct: 351 EVAHEILNRMPSYGLKP-NVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNI 409

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           ++    +  L D  IE  E+M + G MPD +TY+ +++ + K G ++E + L +   A G
Sbjct: 410 LVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACG 469

Query: 288 WKP-----------------------------------DPIAFSVLGKMFGESGDYDGIR 312
            KP                                   +PI F+ L     + G  +   
Sbjct: 470 CKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAI 529

Query: 313 YVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIY 372
            +L++M   G  P+L+ Y+T+++ +GKAGK   A  L + MV  G++P+    +++    
Sbjct: 530 ELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASAL 589

Query: 373 GKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPD 432
            +       +++++ +++     D +LYN +++     G  E A      M +S  C P+
Sbjct: 590 SREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYM-VSSGCVPN 648

Query: 433 NYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
             +YT ++    S G V  A E+  E+   G
Sbjct: 649 ESTYTILIRGLASEGFVKEAQEMLTELCSKG 679



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 125/278 (44%), Gaps = 1/278 (0%)

Query: 225 YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
           Y  I+  A R   F  A+   E ++  G   D    + +L+     G V+E L L     
Sbjct: 197 YHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDEALHLLRDLP 256

Query: 285 ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344
           + G +PD ++++ + K    +  +  ++ +++EM  +   PN+V +NTL+  + + G   
Sbjct: 257 SFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFE 316

Query: 345 LARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
               +  +MVE G TPD +    +I    K    + A E+  RM       + + YNTLL
Sbjct: 317 RVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLL 376

Query: 405 NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
                    EE E L  +M   D C  D+ ++  +++ +   G VD  IEL E+M E G 
Sbjct: 377 KGLCSAERWEETEELLAEMFDKD-CPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGC 435

Query: 465 AINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
             +V+  T +I    K   ID+ V +       G KP+
Sbjct: 436 MPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPN 473



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/302 (21%), Positives = 139/302 (46%), Gaps = 1/302 (0%)

Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS 261
             ++  ++ N M S  ++ + + Y+T++        ++E  E    M+      D+VT++
Sbjct: 349 HLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFN 408

Query: 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
            ++D + ++G V+ V+ L E+ +  G  PD I ++ +   F + G  D    +L+ M + 
Sbjct: 409 ILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTAC 468

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
           G +PN + Y  +L+ +  A +   A  L  +M++ G   +  T   LI    K    + A
Sbjct: 469 GCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQA 528

Query: 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
           +EL ++M  N    D I Y+T+++     G  +EA  L   M ++    P+   Y+++ +
Sbjct: 529 IELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVM-VNKGMSPNTIIYSSIAS 587

Query: 442 IYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
                G ++  I++F+ + +  +  + +    +I  L K    +  +      +  G  P
Sbjct: 588 ALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVP 647

Query: 502 DD 503
           ++
Sbjct: 648 NE 649



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/249 (22%), Positives = 104/249 (41%), Gaps = 1/249 (0%)

Query: 255 PDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYV 314
           P+  TY  ++      G++ + L++ +     G  P P  + V+ +     G +     V
Sbjct: 157 PNAYTYFPVVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRV 216

Query: 315 LQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK 374
           L+++ + G   ++   N +L A+   G    A  L  ++   G  PD  +  A++K    
Sbjct: 217 LEDLHARGCALDVGNCNLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCM 276

Query: 375 ARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNY 434
           A+      EL E M     P + + +NTL++     GL E    +   M +   C PD  
Sbjct: 277 AKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQM-VEHGCTPDIR 335

Query: 435 SYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVS 494
            Y  +++     G+++ A E+   M   G+  NV+    L++ L  A R ++   +    
Sbjct: 336 MYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEM 395

Query: 495 IDRGVKPDD 503
            D+    DD
Sbjct: 396 FDKDCPLDD 404



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 76/183 (41%), Gaps = 1/183 (0%)

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382
           V PN   Y  ++ A+   G+   A ++ DEM   G  P       +++   +    + A+
Sbjct: 155 VPPNAYTYFPVVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAV 214

Query: 383 ELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNI 442
            + E +      +D    N +LN   D G V+EA  L  D+  S  C+PD  SY A+L  
Sbjct: 215 RVLEDLHARGCALDVGNCNLVLNAICDQGSVDEALHLLRDLP-SFGCEPDVVSYNAVLKG 273

Query: 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
                      EL EEM  +    N++    LI  L +    + +  V    ++ G  PD
Sbjct: 274 LCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPD 333

Query: 503 DRL 505
            R+
Sbjct: 334 IRM 336


>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
 gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
          Length = 717

 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 157/304 (51%), Gaps = 1/304 (0%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           + +N  +  L    + +   ++ +EMV   +  D ++Y+T+++   +     E++  F  
Sbjct: 224 VTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSE 283

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M + GL+PD VT+++++    K+G +E+ ++L  +    G + + + F+ L   F + G 
Sbjct: 284 MTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGF 343

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
            D     ++EM+  G+QP++V YN L+    K G+  LAR L  EM    + PD  T + 
Sbjct: 344 LDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYST 403

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           +I  Y K      A +L ++M +     D I Y++L+    +   + +A  LFE+M L  
Sbjct: 404 IISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENM-LQL 462

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
             +PD ++YT +++ +   GNV+ A+ L +EM   GV  +V+  + LI  L K+ R  + 
Sbjct: 463 GVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEA 522

Query: 488 VRVF 491
            R+ 
Sbjct: 523 HRLL 526



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 92/356 (25%), Positives = 173/356 (48%), Gaps = 4/356 (1%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           P  P     LL L+         F  + ++   + P     YN+ +++L    + +    
Sbjct: 116 PSVPAYNAVLLALSDASLPSARRFLSSMLR-HGVAP-NVYTYNILVRALCARGRLEEAVG 173

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTG-LMPDEVTYSAILDVY 267
           +  +M       + +TY+T++    R    D A      M + G   P+ VT++++++  
Sbjct: 174 VVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGL 233

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            K+G++E    +++  V  G  PD ++++ L   + + G       V  EM   G+ P++
Sbjct: 234 CKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDV 293

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
           V + +L+ A  KAG    A +L  +M E GL  +E T TALI  + K  +  DAL   E 
Sbjct: 294 VTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEE 353

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           MR+       + YN L+N    +G ++ A  L  +M+ +   KPD  +Y+ +++ Y   G
Sbjct: 354 MRKCGIQPSVVCYNALINGYCKLGRMDLARELIREME-AKRVKPDVVTYSTIISGYCKVG 412

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
           N+D+A +L ++M + GV  + +  + LI+ L + +R++D   +F   +  GV+PD+
Sbjct: 413 NLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDE 468



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 132/286 (46%), Gaps = 19/286 (6%)

Query: 187 TIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
            + YN  +    + GR   L  +L  EM +  ++ D +TYSTII+   +    D A +  
Sbjct: 363 VVCYNALINGYCKLGR-MDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLN 421

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           ++M K G++PD +TYS+++    +  ++ +   L+E  +  G +PD   ++ L     + 
Sbjct: 422 QKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKE 481

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE--- 362
           G+ +    +  EM   GV P++V Y+ L+  + K+ +   A  L  ++      PD    
Sbjct: 482 GNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKY 541

Query: 363 ------------KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
                       K++ AL+K +      K+A ++++ M +  W +D  +Y+ L++     
Sbjct: 542 DALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRG 601

Query: 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNV--DNAIE 454
           G V +A    + M  S +      + + +  ++  G  V  DNAI+
Sbjct: 602 GNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADNAIQ 647



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 85/181 (46%), Gaps = 1/181 (0%)

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
           G  P++  YN +L A+  A  P  AR     M+  G+ P+  T   L++        ++A
Sbjct: 113 GYAPSVPAYNAVLLALSDASLPS-ARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEA 171

Query: 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
           + +   MR      + + YNTL+      G ++ AER+   M+     KP+  ++ +M+N
Sbjct: 172 VGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVN 231

Query: 442 IYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
                G ++ A ++F+EM   G+A +V+    L+    K   + + + VF     RG+ P
Sbjct: 232 GLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVP 291

Query: 502 D 502
           D
Sbjct: 292 D 292



 Score = 52.4 bits (124), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 44/200 (22%), Positives = 85/200 (42%), Gaps = 15/200 (7%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + I Y+  ++ L   ++     +L   M+   ++ D  TY+T+I    +    ++A+   
Sbjct: 432 DAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLH 491

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG------ 299
           + M + G++PD VTYS +++  +KS + +E   L  +       PD I +  L       
Sbjct: 492 DEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKA 551

Query: 300 ---------KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
                    K F   G       V Q M     + +  VY+ L+    + G    A S  
Sbjct: 552 EFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFH 611

Query: 351 DEMVESGLTPDEKTLTALIK 370
            +M+ SG +P+  +  +L++
Sbjct: 612 KQMLRSGFSPNSTSTISLVR 631


>gi|242064536|ref|XP_002453557.1| hypothetical protein SORBIDRAFT_04g008050 [Sorghum bicolor]
 gi|241933388|gb|EES06533.1| hypothetical protein SORBIDRAFT_04g008050 [Sorghum bicolor]
          Length = 390

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/326 (28%), Positives = 158/326 (48%), Gaps = 5/326 (1%)

Query: 177 IKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCN 236
           +K  N  P    +  +   S + G+  + +  L  EMVS    L+ I Y+T+I    +  
Sbjct: 1   MKQNNCDPDAYTYTILIRMSGKAGKATKFVSFL-EEMVSKGCVLNLIAYNTVIEALGKNK 59

Query: 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS 296
           + D+AI    +M ++   P++ TYS +LDV A  G++  +  + +  + SG     + +S
Sbjct: 60  MVDKAIFMLSKMIESDCQPNQFTYSIMLDVLATGGQLHRLNEILD--ICSGHLNRSV-YS 116

Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356
            L K   +SG       V   M S   + +   + ++LEA+  A K   A  L   M E 
Sbjct: 117 YLVKALCKSGHASEAHSVFCRMWSSHEKGDRDAFVSMLEALCNAEKTAEAIDLLHMMPEK 176

Query: 357 GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEA 416
           G+T D      +    GK +       L+++M+ N    D   YN +++    +GLV++A
Sbjct: 177 GITTDVGMYNIIFSALGKLKQVSFMSSLYDKMKANGVAPDVFTYNIMISSFGRVGLVDKA 236

Query: 417 ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
             LFE+M  S  CKPD  +Y +M+N  G  G++D A  LF++M E G   +V   + LI+
Sbjct: 237 SELFEEMDDSS-CKPDVITYNSMINCLGKNGDLDEAHMLFKDMQEKGYDPDVFTYSILIE 295

Query: 477 CLGKARRIDDLVRVFGVSIDRGVKPD 502
           C GK+ ++D    +F   I +G  P+
Sbjct: 296 CFGKSNKVDMACSLFDEMIAQGCVPN 321



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 101/188 (53%)

Query: 189 FYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERM 248
            YN+   +L   +Q   +  L ++M +N +  D  TY+ +I+   R  L D+A E FE M
Sbjct: 184 MYNIIFSALGKLKQVSFMSSLYDKMKANGVAPDVFTYNIMISSFGRVGLVDKASELFEEM 243

Query: 249 YKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY 308
             +   PD +TY+++++   K+G ++E   L++     G+ PD   +S+L + FG+S   
Sbjct: 244 DDSSCKPDVITYNSMINCLGKNGDLDEAHMLFKDMQEKGYDPDVFTYSILIECFGKSNKV 303

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
           D    +  EM + G  PN+V YN LL+ + + GK   A  L++ + + GL PD  T + L
Sbjct: 304 DMACSLFDEMIAQGCVPNIVTYNILLDCLERHGKTREAHKLYETLKQQGLAPDSITYSIL 363

Query: 369 IKIYGKAR 376
            ++  +++
Sbjct: 364 ERLESRSQ 371



 Score = 99.4 bits (246), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 98/200 (49%), Gaps = 1/200 (0%)

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           EAI+    M + G+  D   Y+ I     K  +V  + SLY++  A+G  PD   ++++ 
Sbjct: 165 EAIDLLHMMPEKGITTDVGMYNIIFSALGKLKQVSFMSSLYDKMKANGVAPDVFTYNIMI 224

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
             FG  G  D    + +EM     +P+++ YN+++  +GK G    A  LF +M E G  
Sbjct: 225 SSFGRVGLVDKASELFEEMDDSSCKPDVITYNSMINCLGKNGDLDEAHMLFKDMQEKGYD 284

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
           PD  T + LI+ +GK+     A  L++ M       + + YN LL+     G   EA +L
Sbjct: 285 PDVFTYSILIECFGKSNKVDMACSLFDEMIAQGCVPNIVTYNILLDCLERHGKTREAHKL 344

Query: 420 FEDMKLSDYCKPDNYSYTAM 439
           +E +K      PD+ +Y+ +
Sbjct: 345 YETLKQQGL-APDSITYSIL 363



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 137/305 (44%), Gaps = 13/305 (4%)

Query: 165 KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNIT 224
           K   K+ F  + +   +  P +   Y++ +  L  G Q   + ++ +    +   L+   
Sbjct: 59  KMVDKAIFMLSKMIESDCQPNQ-FTYSIMLDVLATGGQLHRLNEILDICSGH---LNRSV 114

Query: 225 YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY---- 280
           YS ++    +     EA   F RM+ +    D   + ++L+    + K  E + L     
Sbjct: 115 YSYLVKALCKSGHASEAHSVFCRMWSSHEKGDRDAFVSMLEALCNAEKTAEAIDLLHMMP 174

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
           E+G+ +      I FS LGK+   S     +  +  +MK+ GV P++  YN ++ + G+ 
Sbjct: 175 EKGITTDVGMYNIIFSALGKLKQVSF----MSSLYDKMKANGVAPDVFTYNIMISSFGRV 230

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G    A  LF+EM +S   PD  T  ++I   GK     +A  L++ M+E  +  D   Y
Sbjct: 231 GLVDKASELFEEMDDSSCKPDVITYNSMINCLGKNGDLDEAHMLFKDMQEKGYDPDVFTY 290

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           + L+        V+ A  LF++M ++  C P+  +Y  +L+     G    A +L+E + 
Sbjct: 291 SILIECFGKSNKVDMACSLFDEM-IAQGCVPNIVTYNILLDCLERHGKTREAHKLYETLK 349

Query: 461 ELGVA 465
           + G+A
Sbjct: 350 QQGLA 354



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 52/116 (44%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + I YN  +  L           L  +M     + D  TYS +I C  + N  D A   F
Sbjct: 251 DVITYNSMINCLGKNGDLDEAHMLFKDMQEKGYDPDVFTYSILIECFGKSNKVDMACSLF 310

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKM 301
           + M   G +P+ VTY+ +LD   + GK  E   LYE     G  PD I +S+L ++
Sbjct: 311 DEMIAQGCVPNIVTYNILLDCLERHGKTREAHKLYETLKQQGLAPDSITYSILERL 366



 Score = 40.0 bits (92), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 25/125 (20%), Positives = 60/125 (48%), Gaps = 4/125 (3%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           +++  F  ++ +   P +   Y++ ++      +  +   L +EM++     + +TY+ +
Sbjct: 270 EAHMLFKDMQEKGYDP-DVFTYSILIECFGKSNKVDMACSLFDEMIAQGCVPNIVTYNIL 328

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
           + C +R     EA + +E + + GL PD +TYS +  + ++S +   +    +    +GW
Sbjct: 329 LDCLERHGKTREAHKLYETLKQQGLAPDSITYSILERLESRSQRTARI---RKPSRTTGW 385

Query: 289 KPDPI 293
              PI
Sbjct: 386 VISPI 390


>gi|357521289|ref|XP_003630933.1| Tau class glutathione S-transferase [Medicago truncatula]
 gi|355524955|gb|AET05409.1| Tau class glutathione S-transferase [Medicago truncatula]
          Length = 1320

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 84/279 (30%), Positives = 140/279 (50%), Gaps = 1/279 (0%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           +L +EM   +I  D +TY+++I    +     EA E F  M   GL PDEVTY+A++D Y
Sbjct: 368 KLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTALIDGY 427

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            K+G+++E  S++ + V  G  P+ + ++ L     ++G+ D    +L EM   G+QPN+
Sbjct: 428 CKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEMSRKGLQPNV 487

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
             YNT++  + K G       L +EM  +G  PD  T T L+  Y K      A EL   
Sbjct: 488 YTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRI 547

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           M   +     + +N L+N     G++E+ ERL E M L     P+  ++ +++  Y    
Sbjct: 548 MLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWM-LEKGIMPNATTFNSLMKQYCIKN 606

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
           N+    E+++ M + GV  +      LI+   KAR + +
Sbjct: 607 NMRATTEIYKAMHDRGVMPDSNTYNILIKGHCKARNMKE 645



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 153/334 (45%), Gaps = 2/334 (0%)

Query: 177 IKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCN 236
           +K + L P E I+ N+ +   + G   +  EQL   M    +  DN+ Y+T+I+   +  
Sbjct: 303 LKGKGLKPDEYIYNNIILLLCKNGEVVE-AEQLLRGMRKWGVFPDNVVYTTVISGFCKLG 361

Query: 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS 296
               A + F+ M +  ++PD VTY++++    KSGK+ E   ++   +  G +PD + ++
Sbjct: 362 NVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYT 421

Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356
            L   + ++G+      V  +M   G+ PN+V Y  L + + K G+  +A  L  EM   
Sbjct: 422 ALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEMSRK 481

Query: 357 GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEA 416
           GL P+  T   ++    K    +  ++L E M    +  D I Y TL++    +G + +A
Sbjct: 482 GLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKA 541

Query: 417 ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
             L   M L+   +P   ++  ++N +   G +++   L E M E G+  N      L++
Sbjct: 542 HELLRIM-LNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPNATTFNSLMK 600

Query: 477 CLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
                  +     ++    DRGV PD      L+
Sbjct: 601 QYCIKNNMRATTEIYKAMHDRGVMPDSNTYNILI 634



 Score =  108 bits (271), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 127/260 (48%), Gaps = 4/260 (1%)

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
           R    D+ ++  + +   GL PDE  Y+ I+ +  K+G+V E   L       G  PD +
Sbjct: 289 RIGELDKVLKLVDELKGKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNV 348

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
            ++ +   F + G+      +  EM+   + P++V Y +++  + K+GK   AR +F+EM
Sbjct: 349 VYTTVISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEM 408

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
           +  GL PDE T TALI  Y KA   K+A  +  +M +     + + Y  L +     G +
Sbjct: 409 LVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEI 468

Query: 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTC 473
           + A  L  +M      +P+ Y+Y  ++N     GN++  ++L EEM   G   + +  T 
Sbjct: 469 DVANELLHEMSRKG-LQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTT 527

Query: 474 LIQC---LGKARRIDDLVRV 490
           L+     +G+  +  +L+R+
Sbjct: 528 LMDAYCKMGEMAKAHELLRI 547



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 136/295 (46%), Gaps = 1/295 (0%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           +L +E+    ++ D   Y+ II    +     EA +    M K G+ PD V Y+ ++  +
Sbjct: 298 KLVDELKGKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTVISGF 357

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            K G V     L++        PD + ++ +     +SG     R +  EM   G++P+ 
Sbjct: 358 CKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDE 417

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
           V Y  L++   KAG+   A S+ ++MV+ GLTP+  T TAL     K      A EL   
Sbjct: 418 VTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVANELLHE 477

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           M       +   YNT++N    IG +E+  +L E+M L+ +  PD  +YT +++ Y   G
Sbjct: 478 MSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGF-YPDTITYTTLMDAYCKMG 536

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            +  A EL   M    +   ++    L+     +  ++D  R+    +++G+ P+
Sbjct: 537 EMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPN 591



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 133/286 (46%), Gaps = 12/286 (4%)

Query: 228 IITCAKRCNLF-----------DEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV 276
           ++     CNLF             A++ FE   + G+  + V+ + +L    + GKV E 
Sbjct: 202 VVVSVDSCNLFLSRLSCNFEGIKIAVKVFEEFPELGVCWNTVSCNIVLHCLCQLGKVREA 261

Query: 277 LSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA 336
            +L  +    G  PD +++ V+   +   G+ D +  ++ E+K  G++P+  +YN ++  
Sbjct: 262 HNLLVQMTDRGNFPDVVSYGVVVSGYCRIGELDKVLKLVDELKGKGLKPDEYIYNNIILL 321

Query: 337 MGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMD 396
           + K G+   A  L   M + G+ PD    T +I  + K      A +L++ MR  K   D
Sbjct: 322 LCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTVISGFCKLGNVSAACKLFDEMRRKKIVPD 381

Query: 397 FILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELF 456
            + Y ++++     G + EA  +F +M L    +PD  +YTA+++ Y   G +  A  + 
Sbjct: 382 IVTYTSVIHGICKSGKMVEAREMFNEM-LVKGLEPDEVTYTALIDGYCKAGEMKEAFSVH 440

Query: 457 EEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            +M + G+  NV+  T L   L K   ID    +      +G++P+
Sbjct: 441 NQMVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEMSRKGLQPN 486



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 122/263 (46%), Gaps = 2/263 (0%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           +L +EM    ++ +  TY+TI+    +    ++ ++  E M   G  PD +TY+ ++D Y
Sbjct: 473 ELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAY 532

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            K G++ +   L    +    +P  + F+VL   F  SG  +    +++ M   G+ PN 
Sbjct: 533 CKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPNA 592

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
             +N+L++             ++  M + G+ PD  T   LIK + KAR  K+A  L + 
Sbjct: 593 TTFNSLMKQYCIKNNMRATTEIYKAMHDRGVMPDSNTYNILIKGHCKARNMKEAWFLHKE 652

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           M E  + +    Y+ L+          EA +LFE+M+        +  Y   +++    G
Sbjct: 653 MVEKGYSVTAATYDALIRGFYKRKKFVEARKLFEEMRKHGLVAEKDI-YDIFVDVNYEEG 711

Query: 448 NVDNAIELFEE-MSELGVAINVM 469
           N +  +EL +E M+EL   I V+
Sbjct: 712 NWEITLELCDEFMTELSGTIFVV 734



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 129/282 (45%), Gaps = 1/282 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           + ++ + ++ C  +     EA     +M   G  PD V+Y  ++  Y + G++++VL L 
Sbjct: 241 NTVSCNIVLHCLCQLGKVREAHNLLVQMTDRGNFPDVVSYGVVVSGYCRIGELDKVLKLV 300

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
           +     G KPD   ++ +  +  ++G+      +L+ M+  GV P+ VVY T++    K 
Sbjct: 301 DELKGKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTVISGFCKL 360

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G    A  LFDEM    + PD  T T++I    K+    +A E++  M       D + Y
Sbjct: 361 GNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVTY 420

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
             L++     G ++EA  +   M +     P+  +YTA+ +     G +D A EL  EMS
Sbjct: 421 TALIDGYCKAGEMKEAFSVHNQM-VQKGLTPNVVTYTALADGLCKNGEIDVANELLHEMS 479

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
             G+  NV     ++  L K   I+  V++       G  PD
Sbjct: 480 RKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPD 521



 Score = 41.6 bits (96), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 3/109 (2%)

Query: 394 PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAI 453
           P+ F LY  +L    + G V EA++LF  +         +     +  +  +   +  A+
Sbjct: 171 PLVFDLYFQVL---VENGFVLEAQKLFHKLLRYGVVVSVDSCNLFLSRLSCNFEGIKIAV 227

Query: 454 ELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           ++FEE  ELGV  N + C  ++ CL +  ++ +   +     DRG  PD
Sbjct: 228 KVFEEFPELGVCWNTVSCNIVLHCLCQLGKVREAHNLLVQMTDRGNFPD 276


>gi|302757495|ref|XP_002962171.1| hypothetical protein SELMODRAFT_77736 [Selaginella moellendorffii]
 gi|300170830|gb|EFJ37431.1| hypothetical protein SELMODRAFT_77736 [Selaginella moellendorffii]
          Length = 731

 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 105/404 (25%), Positives = 192/404 (47%), Gaps = 31/404 (7%)

Query: 160 ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIE 219
           IL+  + W+K+   F+W + Q+ +      YN+ +++L    +++L+++  +EM+   + 
Sbjct: 90  ILSEQRDWRKAIEVFSWFQRQDNYEANVFLYNILLRTLGRAAKWELLQKYWSEMLGERVP 149

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV--- 276
               TYS ++    R  + DEAI ++  M ++G+ PDEV  S  +++  + G +EE    
Sbjct: 150 PTIFTYSILVDVHGRAGMKDEAIRFYRHMIESGVEPDEVMVSTYMNLQRRFGDLEEAEKA 209

Query: 277 -LSLYERGVASGW--KPD-PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNT 332
              L+   +  G   +P+ P  F+ +   +GE   +     V  EM   GV+   V +N 
Sbjct: 210 FWGLFSENLVDGTTKRPENPETFNTMISFYGEHAKFAEASKVFAEMMKAGVELTTVTFNA 269

Query: 333 LLEAMGKAGKPGLARSLFDEMVE-SGLTPDEKTLTALIKIYGKARWAKDALEL----WER 387
           ++   GKAG+   A  L  +M +     PD  T  +LI++Y K     D LEL     ER
Sbjct: 270 MIHVYGKAGRTREAELLVTKMKQRKDCCPDVATYNSLIEMYVK----NDKLELVSGCLER 325

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           MR++    D + + TL++  A   +V +AE L ++M+ S +   D   YT M+ +Y    
Sbjct: 326 MRDSGVSPDQVTFRTLISAYAANNVVWKAEALVQEMEGSGFF-IDQAMYTVMIAMYVRAR 384

Query: 448 NVDNAIELFEEMS-----ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           +V  A  +F  +      E+   + VM      +CL +AR       VF ++ + G+K  
Sbjct: 385 DVSKAESVFRFLHSRGGLEVSTYVGVMDVYAEHKCLDQAR------EVFELAKNAGLKTP 438

Query: 503 DRLCGCLLSVVSLCETSEDVGKVITCLQQ--ANPKLVAFLNLIE 544
             L   ++     C+   D   V   +++  A+P   +F +LI+
Sbjct: 439 S-LYNVMMKAYGACDRFTDAVTVFEAMEKDGASPNEASFNSLIQ 481



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 141/275 (51%), Gaps = 9/275 (3%)

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
           L+  TY  ++         D+A E FE     GL    + Y+ ++  Y    +  + +++
Sbjct: 402 LEVSTYVGVMDVYAEHKCLDQAREVFELAKNAGLKTPSL-YNVMMKAYGACDRFTDAVTV 460

Query: 280 YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
           +E     G  P+  +F+ L ++  +    + ++ VL  +K+ G +P+L   ++++   G 
Sbjct: 461 FEAMEKDGASPNEASFNSLIQLLCKGRLLEILQRVLVLVKAAGFKPSLASCSSVVSFYGD 520

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
            G+   A  +F EM+ SG+  D    +AL+  Y +A +A++A +  + ++   +  D I+
Sbjct: 521 MGRVREAERVFKEMLASGVEADVICYSALLNAYAEAGFAREAQQTLDSLKAAGFVPDTIV 580

Query: 400 YNTLLNMCADIGLVEEAERLFEDM-KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458
           Y +++ + +++GL  EAE+++E++ +LS    PD ++   MLN+Y   G    A +LF  
Sbjct: 581 YTSMMKLYSNLGLTAEAEKIYEEISRLS----PDVFAANTMLNLYIKSGMFTEAEQLFRA 636

Query: 459 MSELGVAINVMGCTCLIQCLGKARRID---DLVRV 490
           M      +N + CT +++   +A +I+   D+ RV
Sbjct: 637 MQRGKPGLNEVACTMMLKLYREAGKIEQGLDVARV 671



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 143/306 (46%), Gaps = 16/306 (5%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEE----VLSL 279
           T++T+I+       F EA + F  M K G+    VT++A++ VY K+G+  E    V  +
Sbjct: 231 TFNTMISFYGEHAKFAEASKVFAEMMKAGVELTTVTFNAMIHVYGKAGRTREAELLVTKM 290

Query: 280 YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
            +R       PD   ++ L +M+ ++   + +   L+ M+  GV P+ V + TL+ A   
Sbjct: 291 KQRKDCC---PDVATYNSLIEMYVKNDKLELVSGCLERMRDSGVSPDQVTFRTLISAYAA 347

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
                 A +L  EM  SG   D+   T +I +Y +AR    A  ++ R   ++  ++   
Sbjct: 348 NNVVWKAEALVQEMEGSGFFIDQAMYTVMIAMYVRARDVSKAESVF-RFLHSRGGLEVST 406

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           Y  ++++ A+   +++A  +FE  K +    P    Y  M+  YG+     +A+ +FE M
Sbjct: 407 YVGVMDVYAEHKCLDQAREVFELAKNAGLKTPS--LYNVMMKAYGACDRFTDAVTVFEAM 464

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETS 519
            + G + N      LIQ L K R ++ L RV  +    G KP    C  ++S        
Sbjct: 465 EKDGASPNEASFNSLIQLLCKGRLLEILQRVLVLVKAAGFKPSLASCSSVVSFYG----- 519

Query: 520 EDVGKV 525
            D+G+V
Sbjct: 520 -DMGRV 524



 Score = 99.0 bits (245), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 123/239 (51%), Gaps = 9/239 (3%)

Query: 225 YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
           Y+ ++     C+ F +A+  FE M K G  P+E ++++++ +  K G++ E+L      V
Sbjct: 441 YNVMMKAYGACDRFTDAVTVFEAMEKDGASPNEASFNSLIQLLCK-GRLLEILQRVLVLV 499

Query: 285 -ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
            A+G+KP   + S +   +G+ G       V +EM + GV+ +++ Y+ LL A  +AG  
Sbjct: 500 KAAGFKPSLASCSSVVSFYGDMGRVREAERVFKEMLASGVEADVICYSALLNAYAEAGFA 559

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
             A+   D +  +G  PD    T+++K+Y       +A +++E +  ++   D    NT+
Sbjct: 560 REAQQTLDSLKAAGFVPDTIVYTSMMKLYSNLGLTAEAEKIYEEI--SRLSPDVFAANTM 617

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKP--DNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           LN+    G+  EAE+LF  M+     KP  +  + T ML +Y   G ++  +++   MS
Sbjct: 618 LNLYIKSGMFTEAEQLFRAMQRG---KPGLNEVACTMMLKLYREAGKIEQGLDVARVMS 673



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 123/256 (48%), Gaps = 3/256 (1%)

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
           E L  EM  +   +D   Y+ +I    R     +A   F  ++  G + +  TY  ++DV
Sbjct: 355 EALVQEMEGSGFFIDQAMYTVMIAMYVRARDVSKAESVFRFLHSRGGL-EVSTYVGVMDV 413

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
           YA+   +++   ++E    +G K  P  ++V+ K +G    +     V + M+  G  PN
Sbjct: 414 YAEHKCLDQAREVFELAKNAGLKT-PSLYNVMMKAYGACDRFTDAVTVFEAMEKDGASPN 472

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
              +N+L++ + K     + + +   +  +G  P   + ++++  YG     ++A  +++
Sbjct: 473 EASFNSLIQLLCKGRLLEILQRVLVLVKAAGFKPSLASCSSVVSFYGDMGRVREAERVFK 532

Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
            M  +    D I Y+ LLN  A+ G   EA++  + +K + +  PD   YT+M+ +Y + 
Sbjct: 533 EMLASGVEADVICYSALLNAYAEAGFAREAQQTLDSLKAAGFV-PDTIVYTSMMKLYSNL 591

Query: 447 GNVDNAIELFEEMSEL 462
           G    A +++EE+S L
Sbjct: 592 GLTAEAEKIYEEISRL 607



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 91/199 (45%), Gaps = 2/199 (1%)

Query: 226 STIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVA 285
           S++++         EA   F+ M  +G+  D + YSA+L+ YA++G   E     +   A
Sbjct: 512 SSVVSFYGDMGRVREAERVFKEMLASGVEADVICYSALLNAYAEAGFAREAQQTLDSLKA 571

Query: 286 SGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGL 345
           +G+ PD I ++ + K++   G       + +E+  L   P++   NT+L    K+G    
Sbjct: 572 AGFVPDTIVYTSMMKLYSNLGLTAEAEKIYEEISRL--SPDVFAANTMLNLYIKSGMFTE 629

Query: 346 ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405
           A  LF  M       +E   T ++K+Y +A   +  L++   M       D   +N ++ 
Sbjct: 630 AEQLFRAMQRGKPGLNEVACTMMLKLYREAGKIEQGLDVARVMSRRFLITDARAFNGVIA 689

Query: 406 MCADIGLVEEAERLFEDMK 424
           M    GL+ EA    ++M+
Sbjct: 690 MYVKAGLMREALEALKEMR 708


>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
 gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
          Length = 751

 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 83/314 (26%), Positives = 154/314 (49%), Gaps = 1/314 (0%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN+ ++        ++  +   EM  N    + +TY+T+I    +    DEA +    M 
Sbjct: 206 YNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIGAYCKLKRIDEAFKLLRSMG 265

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
             GL P+ +TY+ +++   + G++EE   +       G+ PD + ++ L   + + G++ 
Sbjct: 266 LEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFH 325

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               +  EM   G+ P++V Y +L+  M KAG    A   FD+M   GL P+  T T+LI
Sbjct: 326 QALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLI 385

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
             + +  +  +A  +W+ M  + +P   + YN LLN     G +EEA  L   M+     
Sbjct: 386 NGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGME-GKGL 444

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
            PD  SY+ ++  +     +D A ++  EM E GV+ + +  + LIQ L + RR+++   
Sbjct: 445 SPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACD 504

Query: 490 VFGVSIDRGVKPDD 503
           +F   +++ + PD+
Sbjct: 505 LFQEMLNKSLLPDE 518



 Score =  132 bits (331), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 113/463 (24%), Positives = 208/463 (44%), Gaps = 43/463 (9%)

Query: 63  SLSEQLKP-LSSTTLSPTKNDRTPLLSKPKSTWVNPTKPRRSVLSLQRQKRSTYSYNPRV 121
           S+S Q+ P L+S  L  T+NDRT  L      ++N  KP +              +NP  
Sbjct: 40  SISSQITPELASYLLLQTQNDRTLTLK-----FINFAKPHQF-------------FNPHC 81

Query: 122 RDLKL--------------FARKL--NDCDNTEEAFLRAITEIPHQPTRENAL--LILNS 163
           + + L               A+ L  N  D     F + + +        +A+  L++ S
Sbjct: 82  KCIALHILTKFKLYKTAQNLAQDLAENSVDEKGNYFFQCLKDTYFMCNSSSAVFDLVVKS 141

Query: 164 ---LKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIE 219
              L F +K+    +  K     P   + YN  + S+ R  +     E++  EM+++ + 
Sbjct: 142 CSYLNFIEKALNIVDLAKLNGFMP-GVLSYNAILDSIVRCRKPVIFAEKVYREMIASGVS 200

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
           L+  +Y+ +I         +  + +FE M +   +P+ VTY+ ++  Y K  +++E   L
Sbjct: 201 LNVFSYNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIGAYCKLKRIDEAFKL 260

Query: 280 YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
                  G +P+ + ++++       G  +    VL EM   G  P+ V YNTL+    K
Sbjct: 261 LRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCK 320

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
            G    A  L  EM+ +GL PD  T T+LI    KA     A+E +++M       + + 
Sbjct: 321 VGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVT 380

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           Y +L+N  +  G ++EA R++++M  S +  P   +Y A+LN +   G ++ AI L   M
Sbjct: 381 YTSLINGFSQKGFMDEAYRIWDEMIRSGF-PPTIVTYNALLNGHCVSGRMEEAIGLLRGM 439

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
              G++ +V+  + +I    + + +D   ++    +++GV PD
Sbjct: 440 EGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPD 482



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 94/354 (26%), Positives = 166/354 (46%), Gaps = 14/354 (3%)

Query: 174 FNWIKSQNLFPME--TIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIIT 230
           F  ++S  L  +E   + YN+ +  L R GR  +    LA EM       D +TY+T++ 
Sbjct: 258 FKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGVLA-EMDRKGFAPDGVTYNTLVN 316

Query: 231 CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
              +   F +A+     M + GL PD VTY+++++   K+G +   +  +++    G +P
Sbjct: 317 GYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRP 376

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
           + + ++ L   F + G  D    +  EM   G  P +V YN LL     +G+   A  L 
Sbjct: 377 NGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLL 436

Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
             M   GL+PD  + + +I  + + +    A ++   M E     D I Y++L+    + 
Sbjct: 437 RGMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQ 496

Query: 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG 470
             + EA  LF++M L+    PD ++YT+++N Y   G+++ A+ L +EM + G   + + 
Sbjct: 497 RRLNEACDLFQEM-LNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVT 555

Query: 471 CTCLIQCLGKARRIDDLVRV-----FGVSIDRGVKPDDRLCGC----LLSVVSL 515
              LI  L K  R  +  R+     +  SI  G+  D  +  C      SVV+L
Sbjct: 556 YNVLINGLNKQARTREAKRLLLKLFYDESIPNGITYDTLIESCSDIEFKSVVAL 609



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 87/353 (24%), Positives = 153/353 (43%), Gaps = 59/353 (16%)

Query: 180 QNLFPMETIFY----NVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRC 235
           +N  P + + Y    N   K+    R  +  +Q    M    +  + +TY+++I    + 
Sbjct: 336 RNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQ----MHVRGLRPNGVTYTSLINGFSQK 391

Query: 236 NLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAF 295
              DEA   ++ M ++G  P  VTY+A+L+ +  SG++EE + L       G  PD +++
Sbjct: 392 GFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSY 451

Query: 296 SVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVE 355
           S +   F    + D    +  EM   GV P+ + Y++L++ + +  +   A  LF EM+ 
Sbjct: 452 STIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLN 511

Query: 356 SGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN---------- 405
             L PDE T T+LI  Y K     +AL L + M +  +  D + YN L+N          
Sbjct: 512 KSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQARTRE 571

Query: 406 -------------------------MCADI---------------GLVEEAERLFEDMKL 425
                                     C+DI               GL+ EA+++FE M +
Sbjct: 572 AKRLLLKLFYDESIPNGITYDTLIESCSDIEFKSVVALIKGFCMKGLMNEADQVFESM-I 630

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL 478
               KP+   Y  +++ +   GNV  A +L++EM + G   + +    L++ L
Sbjct: 631 KRNQKPNEAVYNVIIHGHCRDGNVHKAHKLYKEMVDFGFIPHTVTIIALVKAL 683



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 124/274 (45%), Gaps = 22/274 (8%)

Query: 208 QLANEMVSNEIELDNITYSTIIT--CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
           Q+  EMV   +  D ITYS++I   C +R    +EA + F+ M    L+PDE TY+++++
Sbjct: 469 QMNAEMVEKGVSPDAITYSSLIQGLCEQR--RLNEACDLFQEMLNKSLLPDEFTYTSLIN 526

Query: 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325
            Y K G + E L+L++  +  G+ PD + ++VL     +       + +L ++      P
Sbjct: 527 GYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQARTREAKRLLLKLFYDESIP 586

Query: 326 NLVVYNTLLEAMGK---------------AGKPGLARSLFDEMVESGLTPDEKTLTALIK 370
           N + Y+TL+E+                   G    A  +F+ M++    P+E     +I 
Sbjct: 587 NGITYDTLIESCSDIEFKSVVALIKGFCMKGLMNEADQVFESMIKRNQKPNEAVYNVIIH 646

Query: 371 IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCK 430
            + +      A +L++ M +  +    +    L+      G+ E+   +  D+  S  CK
Sbjct: 647 GHCRDGNVHKAHKLYKEMVDFGFIPHTVTIIALVKALYSEGMDEQLNLVIRDILRS--CK 704

Query: 431 PDNYSYT-AMLNIYGSGGNVDNAIELFEEMSELG 463
             +   + A++ I    GN+D    L  EM++ G
Sbjct: 705 LSDAELSKALVQINHKEGNIDAVFNLLTEMAKDG 738



 Score = 49.3 bits (116), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 80/195 (41%), Gaps = 19/195 (9%)

Query: 183 FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIIT------------ 230
           F  +T+ YNV +  L    + +  ++L  ++  +E   + ITY T+I             
Sbjct: 549 FLPDTVTYNVLINGLNKQARTREAKRLLLKLFYDESIPNGITYDTLIESCSDIEFKSVVA 608

Query: 231 -----CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVA 285
                C K   L +EA + FE M K    P+E  Y+ I+  + + G V +   LY+  V 
Sbjct: 609 LIKGFCMK--GLMNEADQVFESMIKRNQKPNEAVYNVIIHGHCRDGNVHKAHKLYKEMVD 666

Query: 286 SGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGL 345
            G+ P  +    L K     G  + +  V++++       +  +   L++   K G    
Sbjct: 667 FGFIPHTVTIIALVKALYSEGMDEQLNLVIRDILRSCKLSDAELSKALVQINHKEGNIDA 726

Query: 346 ARSLFDEMVESGLTP 360
             +L  EM + G  P
Sbjct: 727 VFNLLTEMAKDGFLP 741


>gi|326513138|dbj|BAK06809.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 637

 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 95/337 (28%), Positives = 160/337 (47%), Gaps = 11/337 (3%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           ++Y  F  +K +   P    +  +   S R G+  + +    +EMVS    L+ I Y+T+
Sbjct: 239 QAYQVFEDMKQKYCEPDAYTYTILIRMSGRAGKASKFL-SFFDEMVSKGCALNLIAYNTL 297

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVE---EVLSLYERGVA 285
           I    +  + D+ I    +M + G  P++ TYS  LD+ AK G++    EVL + +R + 
Sbjct: 298 IEALGKNKMVDKVIFVLSKMIEGGCQPNQFTYSITLDILAKEGQLHRLNEVLDICDRYM- 356

Query: 286 SGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGL 345
                +   +S L K   +SG       V  +M +     +   + ++LE +  +GK   
Sbjct: 357 -----NKSIYSYLVKSLSKSGHVSEAHNVFCQMWNSYETGDRDAFVSMLEVLCNSGKTLE 411

Query: 346 ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405
           A  L   M E G+  D      +    GK +       L+++M+ N    D   YN +++
Sbjct: 412 AIDLLHMMPEKGVATDVGMYNMVFSALGKLKQVSFITSLFDKMKANGIAPDLFTYNIMIS 471

Query: 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
               +GLV++A  LFEDM  S  CKPD  +Y +++N  G  G++D A  LF+EM E G  
Sbjct: 472 SYGRVGLVDKASGLFEDMNASS-CKPDVITYNSLINCLGKNGDLDEAHMLFKEMQEKGYG 530

Query: 466 INVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            +V   + LI+C GK+ ++D    +F   I  G  P+
Sbjct: 531 PDVFTYSILIECFGKSNKVDMACNLFLDMIAEGCIPN 567



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 133/288 (46%), Gaps = 10/288 (3%)

Query: 218 IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL 277
           + L+  TY  I+    R     +  E +E M + G M D   Y+ +LD  AKSG V++  
Sbjct: 182 LRLNGYTYKCILQAHLRSREVSKGFEVYEEMRRKGYMLDIFGYNMLLDALAKSGMVDQAY 241

Query: 278 SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
            ++E       +PD   +++L +M G +G          EM S G   NL+ YNTL+EA+
Sbjct: 242 QVFEDMKQKYCEPDAYTYTILIRMSGRAGKASKFLSFFDEMVSKGCALNLIAYNTLIEAL 301

Query: 338 GKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIY---GKARWAKDALELWERMRENKWP 394
           GK         +  +M+E G  P++ T +  + I    G+     + L++ +R       
Sbjct: 302 GKNKMVDKVIFVLSKMIEGGCQPNQFTYSITLDILAKEGQLHRLNEVLDICDRY------ 355

Query: 395 MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIE 454
           M+  +Y+ L+   +  G V EA  +F  M  + Y   D  ++ +ML +  + G    AI+
Sbjct: 356 MNKSIYSYLVKSLSKSGHVSEAHNVFCQM-WNSYETGDRDAFVSMLEVLCNSGKTLEAID 414

Query: 455 LFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           L   M E GVA +V     +   LGK +++  +  +F      G+ PD
Sbjct: 415 LLHMMPEKGVATDVGMYNMVFSALGKLKQVSFITSLFDKMKANGIAPD 462



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 100/188 (53%)

Query: 189 FYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERM 248
            YN+   +L   +Q   I  L ++M +N I  D  TY+ +I+   R  L D+A   FE M
Sbjct: 430 MYNMVFSALGKLKQVSFITSLFDKMKANGIAPDLFTYNIMISSYGRVGLVDKASGLFEDM 489

Query: 249 YKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY 308
             +   PD +TY+++++   K+G ++E   L++     G+ PD   +S+L + FG+S   
Sbjct: 490 NASSCKPDVITYNSLINCLGKNGDLDEAHMLFKEMQEKGYGPDVFTYSILIECFGKSNKV 549

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
           D    +  +M + G  PN+V YN LL+ + + GK   A   ++ M + GLTPD  T + L
Sbjct: 550 DMACNLFLDMIAEGCIPNVVTYNILLDCLERHGKTAEAHKHYETMKQQGLTPDSITCSIL 609

Query: 369 IKIYGKAR 376
            ++  +++
Sbjct: 610 ERLESRSQ 617



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 111/217 (51%), Gaps = 5/217 (2%)

Query: 287 GWKPDPIAFS-VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGL 345
           G++ D  +++ +L  +F    D      ++ EM+  GV  N+   N L+   G   +   
Sbjct: 113 GFRHDAFSYNRILALLFRTRADPSEALRIVSEMERDGVSGNISTVNLLVGIGGGGVE--- 169

Query: 346 ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405
                +  ++ GL  +  T   +++ + ++R      E++E MR   + +D   YN LL+
Sbjct: 170 VTKCLELAMKWGLRLNGYTYKCILQAHLRSREVSKGFEVYEEMRRKGYMLDIFGYNMLLD 229

Query: 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
             A  G+V++A ++FEDMK   YC+PD Y+YT ++ + G  G     +  F+EM   G A
Sbjct: 230 ALAKSGMVDQAYQVFEDMK-QKYCEPDAYTYTILIRMSGRAGKASKFLSFFDEMVSKGCA 288

Query: 466 INVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           +N++    LI+ LGK + +D ++ V    I+ G +P+
Sbjct: 289 LNLIAYNTLIEALGKNKMVDKVIFVLSKMIEGGCQPN 325



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 123/263 (46%), Gaps = 9/263 (3%)

Query: 225 YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY---- 280
           YS ++    +     EA   F +M+ +    D   + ++L+V   SGK  E + L     
Sbjct: 361 YSYLVKSLSKSGHVSEAHNVFCQMWNSYETGDRDAFVSMLEVLCNSGKTLEAIDLLHMMP 420

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
           E+GVA+      + FS LGK+         I  +  +MK+ G+ P+L  YN ++ + G+ 
Sbjct: 421 EKGVATDVGMYNMVFSALGKL----KQVSFITSLFDKMKANGIAPDLFTYNIMISSYGRV 476

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G    A  LF++M  S   PD  T  +LI   GK     +A  L++ M+E  +  D   Y
Sbjct: 477 GLVDKASGLFEDMNASSCKPDVITYNSLINCLGKNGDLDEAHMLFKEMQEKGYGPDVFTY 536

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           + L+        V+ A  LF DM +++ C P+  +Y  +L+     G    A + +E M 
Sbjct: 537 SILIECFGKSNKVDMACNLFLDM-IAEGCIPNVVTYNILLDCLERHGKTAEAHKHYETMK 595

Query: 461 ELGVAINVMGCTCLIQCLGKARR 483
           + G+  + + C+ L +   +++R
Sbjct: 596 QQGLTPDSITCSILERLESRSQR 618



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 95/199 (47%), Gaps = 1/199 (0%)

Query: 200 GRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVT 259
           G+  + I+ L + M    +  D   Y+ + +   +          F++M   G+ PD  T
Sbjct: 407 GKTLEAID-LLHMMPEKGVATDVGMYNMVFSALGKLKQVSFITSLFDKMKANGIAPDLFT 465

Query: 260 YSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMK 319
           Y+ ++  Y + G V++   L+E   AS  KPD I ++ L    G++GD D    + +EM+
Sbjct: 466 YNIMISSYGRVGLVDKASGLFEDMNASSCKPDVITYNSLINCLGKNGDLDEAHMLFKEMQ 525

Query: 320 SLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAK 379
             G  P++  Y+ L+E  GK+ K  +A +LF +M+  G  P+  T   L+    +     
Sbjct: 526 EKGYGPDVFTYSILIECFGKSNKVDMACNLFLDMIAEGCIPNVVTYNILLDCLERHGKTA 585

Query: 380 DALELWERMRENKWPMDFI 398
           +A + +E M++     D I
Sbjct: 586 EAHKHYETMKQQGLTPDSI 604



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 48/116 (41%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + I YN  +  L           L  EM       D  TYS +I C  + N  D A   F
Sbjct: 497 DVITYNSLINCLGKNGDLDEAHMLFKEMQEKGYGPDVFTYSILIECFGKSNKVDMACNLF 556

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKM 301
             M   G +P+ VTY+ +LD   + GK  E    YE     G  PD I  S+L ++
Sbjct: 557 LDMIAEGCIPNVVTYNILLDCLERHGKTAEAHKHYETMKQQGLTPDSITCSILERL 612


>gi|410110125|gb|AFV61142.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           micromera]
          Length = 434

 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 92/295 (31%), Positives = 151/295 (51%), Gaps = 7/295 (2%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L +EM    +  D  TYST+IT   +  LFD A+ W ++M +  +  D V YS ++++  
Sbjct: 2   LFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELSR 61

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           K     + +S++ R   SG+ PD +A++ +  +FG++  +   R ++ EMK+ GV PN  
Sbjct: 62  KXCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTT 121

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            Y+TLL    +  K   A S+F EM E     D  T   +I +YG+   AK+A +L+  M
Sbjct: 122 SYSTLLTMYXENKKFLEALSVFSEMREIKCXLDLTTCNIMIDVYGQLGMAKEADKLFWGM 181

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
           R+     + + YNTLL +  D  L  EA  LF  M+  +  + +  +Y +M+ IYG    
Sbjct: 182 RKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKN-IEQNVVTYNSMIMIYGKTLE 240

Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF------GVSIDR 497
            + A  L +EM   G+  N +  + +I   GK  ++D    +F      GV ID+
Sbjct: 241 HEKANNLIQEMQSRGIEPNSITYSTIISIWGKXGKLDRAAMLFQKLRSSGVEIDQ 295



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 82/366 (22%), Positives = 170/366 (46%), Gaps = 6/366 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K     P + + YN  +      + F+    L +EM +  +  +  +YS
Sbjct: 66  YSKAISIFSRLKRSGFTP-DLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYS 124

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +     D  T + ++DVY + G  +E   L+      
Sbjct: 125 TLLTMYXENKKFLEALSVFSEMREIKCXLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 184

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   ++ N+V YN+++   GK  +   A
Sbjct: 185 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKA 244

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R +   +D IL+ T++  
Sbjct: 245 NNLIQEMQSRGIEPNSITYSTIISIWGKXGKLDRAAMLFQKLRSSGVEIDQILFQTMIVA 304

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K     +PDN      ++I    G ++ A  +F +  + G   
Sbjct: 305 YERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVK 359

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           ++     +I  L K ++  +++ VF      G  PD  +   +L+     +  +    V 
Sbjct: 360 DITVFERMIHLLSKYKKYSNVIEVFDKMRGLGYFPDSNVIAVVLNAYGKLQEFDKANDVY 419

Query: 527 TCLQQA 532
             +Q+ 
Sbjct: 420 MEMQEV 425



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 82/343 (23%), Positives = 156/343 (45%), Gaps = 40/343 (11%)

Query: 156 NALL-ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMV 214
           NA++ +    K ++++    + +K+  + P  T  Y+  +      ++F     + +EM 
Sbjct: 89  NAMINVFGKAKLFREARSLISEMKTAGVMP-NTTSYSTLLTMYXENKKFLEALSVFSEMR 147

Query: 215 SNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVE 274
             +  LD  T + +I    +  +  EA + F  M K G+ P+ V+Y+ +L VY  +    
Sbjct: 148 EIKCXLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFG 207

Query: 275 EVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLL 334
           E + L+        + + + ++ +  ++G++ +++    ++QEM+S G++PN + Y+T++
Sbjct: 208 EAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTII 267

Query: 335 EAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWP 394
              GK GK   A  LF ++  SG+  D+     +I  Y +A     A  L   + E K P
Sbjct: 268 SIWGKXGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRL---LHELKRP 324

Query: 395 MDFILYNTLLNMCADIGLVEEAERLF---------EDMK--------LSDYCK------- 430
            D I  +T +++ A  G +EEA  +F         +D+         LS Y K       
Sbjct: 325 -DNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYSNVIEV 383

Query: 431 ----------PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
                     PD+     +LN YG     D A +++ EM E+G
Sbjct: 384 FDKMRGLGYFPDSNVIAVVLNAYGKLQEFDKANDVYMEMQEVG 426



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 97/220 (44%), Gaps = 1/220 (0%)

Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYG 373
           +  EM+   + P+   Y+TL+   GK G    A S   +M +  +  D    + LI++  
Sbjct: 2   LFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELSR 61

Query: 374 KARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDN 433
           K      A+ ++ R++ + +  D + YN ++N+     L  EA  L  +MK +    P+ 
Sbjct: 62  KXCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAG-VMPNT 120

Query: 434 YSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGV 493
            SY+ +L +Y        A+ +F EM E+   +++  C  +I   G+     +  ++F  
Sbjct: 121 TSYSTLLTMYXENKKFLEALSVFSEMREIKCXLDLTTCNIMIDVYGQLGMAKEADKLFWG 180

Query: 494 SIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN 533
               G++P+      LL V    E   +   +   +Q+ N
Sbjct: 181 MRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKN 220


>gi|46091161|dbj|BAD13709.1| PPR protein [Oryza sativa Indica Group]
          Length = 332

 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 151/292 (51%), Gaps = 1/292 (0%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
           NEM+   I  + +TY++II    +    D+A+E    M K+G+MPD +TY++I+  +  S
Sbjct: 36  NEMLDKRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSS 95

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
           G+ +E +   ++  + G +PD + ++ L     ++G     R +   M   G++P++  Y
Sbjct: 96  GQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTY 155

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
            TLL+     G       L D MV +G+ P+    + L+  Y K    ++A+ ++ +MR+
Sbjct: 156 GTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQ 215

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
                + + Y T++++    G VE+A   FE M + +  +PD+  Y ++++        +
Sbjct: 216 QGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQM-IDEGLRPDSIVYNSLIHSLCIFDKWE 274

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            A ELF EM + G+ ++ +    +I    K  R+ + V++F + +  GVKPD
Sbjct: 275 KAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESVKLFDLMVRIGVKPD 326



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 124/262 (47%), Gaps = 3/262 (1%)

Query: 255 PDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYV 314
           PD V+YS +++ + K G +++  S Y   +     P+ + ++ +     ++   D    V
Sbjct: 10  PDVVSYSTVINGFFKEGDLDKTYSTYNEMLDKRISPNVVTYNSIIAALCKAQTVDKAMEV 69

Query: 315 LQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK 374
           L  M   GV P+ + YN+++     +G+P  A     +M   G+ PD  T  +L+    K
Sbjct: 70  LTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCK 129

Query: 375 ARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNY 434
                +A ++++ M +     D   Y TLL   A  G + E   L  D+ + +   P++Y
Sbjct: 130 NGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLL-DLMVRNGIHPNHY 188

Query: 435 SYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVS 494
            ++ ++  Y     V+ A+ +F +M + G+  N +    +I  L K+ R++D +  F   
Sbjct: 189 VFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQM 248

Query: 495 IDRGVKPDDRLCGCLLSVVSLC 516
           ID G++PD  +   L+   SLC
Sbjct: 249 IDEGLRPDSIVYNSLIH--SLC 268



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 84/160 (52%)

Query: 206 IEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
           +  L + MV N I  ++  +S ++    +    +EA+  F +M + GL P+ VTY  ++D
Sbjct: 171 MHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVID 230

Query: 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325
           V  KSG+VE+ +  +E+ +  G +PD I ++ L         ++    +  EM   G+  
Sbjct: 231 VLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICL 290

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           + + +N+++++  K G+   +  LFD MV  G+ PD  TL
Sbjct: 291 STIFFNSIIDSHCKEGRVIESVKLFDLMVRIGVKPDIITL 330



 Score = 42.7 bits (99), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 38/74 (51%)

Query: 429 CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLV 488
           C PD  SY+ ++N +   G++D     + EM +  ++ NV+    +I  L KA+ +D  +
Sbjct: 8   CPPDVVSYSTVINGFFKEGDLDKTYSTYNEMLDKRISPNVVTYNSIIAALCKAQTVDKAM 67

Query: 489 RVFGVSIDRGVKPD 502
            V    +  GV PD
Sbjct: 68  EVLTTMVKSGVMPD 81


>gi|357481045|ref|XP_003610808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512143|gb|AES93766.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1084

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 105/409 (25%), Positives = 189/409 (46%), Gaps = 22/409 (5%)

Query: 205 LIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAIL 264
           L+E+  +EM+   + L+ +  S    C      FD+A +    M   G +PD+ TYS ++
Sbjct: 408 LVEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDQAFKIICEMMGKGFVPDDSTYSKVI 467

Query: 265 DVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQ 324
                + KVE+  SL+E    +G  P    +++L   F ++G     R    EM   G  
Sbjct: 468 GFLCDASKVEKAFSLFEEMKRNGIVPSVYTYTILIDSFCKAGLIQQARKWFDEMLHKGCT 527

Query: 325 PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384
           PN+V Y  L+ A  KA +  +A  LF+ M+  G  P+  T TALI  + KA   + A ++
Sbjct: 528 PNVVTYTALIHAYLKAKQMPVADELFEMMLLEGCKPNVVTYTALIDGHCKAGQIEKACQI 587

Query: 385 WERMRENKWPMDF----------------ILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428
           + RMR +    D                 I Y  L++       V+EA  L + M L+  
Sbjct: 588 YARMRGDIESSDMDKYFKLDHNNCEGPNVITYGALVDGLCKANRVKEAHELLDTM-LAHG 646

Query: 429 CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLV 488
           C+P+   Y A+++ +   G + +A E+F +MSE G + N+   +  I CL K  R+D ++
Sbjct: 647 CEPNQIVYDAVIDGFCKIGKLQDAQEVFTKMSERGYSPNLYTYSSFIDCLFKDNRLDLVL 706

Query: 489 RVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ--ANPKLVAFLNLIE-- 544
           +V    ++    P+  +   ++  +     +++  K++  +++   NP +V +  +I+  
Sbjct: 707 KVLSKMLENSCTPNVVIYTEMVDGLCKIGKTDEAYKLMLKMEEKGCNPNVVTYTAMIDGF 766

Query: 545 DNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELL 593
             S   E   E FR++           +   LI+ C +  L + A++LL
Sbjct: 767 GKSGKIEQCLELFRDMCSKGCAPNFITY-RVLINHCCSNGLLDEAYKLL 814



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 94/400 (23%), Positives = 174/400 (43%), Gaps = 43/400 (10%)

Query: 223  ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
            ITY  ++    + N   EA E  + M   G  P+++ Y A++D + K GK+++   ++ +
Sbjct: 617  ITYGALVDGLCKANRVKEAHELLDTMLAHGCEPNQIVYDAVIDGFCKIGKLQDAQEVFTK 676

Query: 283  GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
                G+ P+   +S       +    D +  VL +M      PN+V+Y  +++ + K GK
Sbjct: 677  MSERGYSPNLYTYSSFIDCLFKDNRLDLVLKVLSKMLENSCTPNVVIYTEMVDGLCKIGK 736

Query: 343  PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
               A  L  +M E G  P+  T TA+I  +GK+   +  LEL+  M       +FI Y  
Sbjct: 737  TDEAYKLMLKMEEKGCNPNVVTYTAMIDGFGKSGKIEQCLELFRDMCSKGCAPNFITYRV 796

Query: 403  LLNMCADIGLVEEAERLFEDMKLSDYCK-------------------------------- 430
            L+N C   GL++EA +L ++MK + + K                                
Sbjct: 797  LINHCCSNGLLDEAYKLLDEMKQTYWPKHILSHRKIIEGFSQEFITSIGLLDELSENESV 856

Query: 431  PDNYSYTAMLNIYGSGGNVDNAIELFEEMSE--LGVAINVMGCTCLIQCLGKARRIDDLV 488
            P +  Y  +++ Y   G ++ A++L EE+S        N      LI+ L  A ++D  +
Sbjct: 857  PVDSLYRILIDNYIKAGRLEVALDLLEEISSSPSHAVSNKYLYASLIENLSHASKVDKAL 916

Query: 489  RVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNST 548
             ++   I + V P+      L  +V L +    V K    LQ ++      ++ +++ +T
Sbjct: 917  ELYASMISKNVVPE------LSILVHLIKGLIKVDKWQEALQLSDSICQMDIHWLQEKAT 970

Query: 549  GFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNER 588
            G     EE   ++    V+A       +++ C + ++N R
Sbjct: 971  GR---TEEMVKLVIAAMVEAETGVSEEILERCSSYSINVR 1007



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/325 (24%), Positives = 140/325 (43%), Gaps = 7/325 (2%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           F+ I     F  +T+FYN  +  L     F+    + + M S+    + +TY  +++   
Sbjct: 266 FDLIDEAEDFVPDTVFYNRMVSGLCEASLFEEAMDILHRMRSSSCIPNVVTYRILLSGCL 325

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
           R             M   G  P+   +++++  Y KS        L+++ +  G +P  +
Sbjct: 326 RKGQLGRCKRILSMMITEGCYPNREIFNSLIHAYCKSRDYSYAYKLFKKMIKCGCQPGYL 385

Query: 294 AFSV-LGKMFG-----ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
            +++ +G +        S   D +     EM  LGV  N V  +     +  AGK   A 
Sbjct: 386 VYNIFIGSVCSNEEQPSSDILDLVEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDQAF 445

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
            +  EM+  G  PD+ T + +I     A   + A  L+E M+ N        Y  L++  
Sbjct: 446 KIICEMMGKGFVPDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTYTILIDSF 505

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
              GL+++A + F++M L   C P+  +YTA+++ Y     +  A ELFE M   G   N
Sbjct: 506 CKAGLIQQARKWFDEM-LHKGCTPNVVTYTALIHAYLKAKQMPVADELFEMMLLEGCKPN 564

Query: 468 VMGCTCLIQCLGKARRIDDLVRVFG 492
           V+  T LI    KA +I+   +++ 
Sbjct: 565 VVTYTALIDGHCKAGQIEKACQIYA 589



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 71/319 (22%), Positives = 128/319 (40%), Gaps = 42/319 (13%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           TY+ +I    R +  D A      M     + D  T S       K GK  E   L +  
Sbjct: 213 TYNALIQVFLRADKLDTAYLVKREMLSYAFVMDRYTLSCFAYSLCKGGKCREAFDLIDE- 271

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
            A  + PD + ++ +     E+  ++    +L  M+S    PN+V Y  LL    + G+ 
Sbjct: 272 -AEDFVPDTVFYNRMVSGLCEASLFEEAMDILHRMRSSSCIPNVVTYRILLSGCLRKGQL 330

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
           G  + +   M+  G  P+ +   +LI  Y K+R    A +L+++M +      +++YN  
Sbjct: 331 GRCKRILSMMITEGCYPNREIFNSLIHAYCKSRDYSYAYKLFKKMIKCGCQPGYLVYNIF 390

Query: 404 L-NMCAD--------IGLVEEAERLFEDM-------KLSDYCK----------------- 430
           + ++C++        + LVE+A     D+        +S++ +                 
Sbjct: 391 IGSVCSNEEQPSSDILDLVEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDQAFKIICE 450

Query: 431 -------PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483
                  PD+ +Y+ ++        V+ A  LFEEM   G+  +V   T LI    KA  
Sbjct: 451 MMGKGFVPDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTYTILIDSFCKAGL 510

Query: 484 IDDLVRVFGVSIDRGVKPD 502
           I    + F   + +G  P+
Sbjct: 511 IQQARKWFDEMLHKGCTPN 529



 Score = 48.1 bits (113), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 75/187 (40%), Gaps = 3/187 (1%)

Query: 315 LQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK 374
           L  +K  G +P+   YN L++   +A K   A  +  EM+      D  TL+       K
Sbjct: 199 LGRLKDFGYKPSQTTYNALIQVFLRADKLDTAYLVKREMLSYAFVMDRYTLSCFAYSLCK 258

Query: 375 ARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNY 434
               ++A +L +   +  +  D + YN +++   +  L EEA  +   M+ S  C P+  
Sbjct: 259 GGKCREAFDLIDEAED--FVPDTVFYNRMVSGLCEASLFEEAMDILHRMR-SSSCIPNVV 315

Query: 435 SYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVS 494
           +Y  +L+     G +     +   M   G   N      LI    K+R      ++F   
Sbjct: 316 TYRILLSGCLRKGQLGRCKRILSMMITEGCYPNREIFNSLIHAYCKSRDYSYAYKLFKKM 375

Query: 495 IDRGVKP 501
           I  G +P
Sbjct: 376 IKCGCQP 382


>gi|403366299|gb|EJY82949.1| hypothetical protein OXYTRI_19434 [Oxytricha trifallax]
          Length = 1420

 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 87/308 (28%), Positives = 158/308 (51%), Gaps = 9/308 (2%)

Query: 212  EMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG 271
            EM  + I+  ++TY  +I      N  D A   F++M    L+P+ VTY  ++D   K+ 
Sbjct: 726  EMQFSNIKPSSVTYGILIKAYGSANQLDNAFFVFKKMKDNCLIPNSVTYGCLIDACVKNN 785

Query: 272  KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMK-SLGVQPNLVVY 330
            ++E  + ++E     G + + I F+ L K F +S   D    V Q MK    ++PN V +
Sbjct: 786  QIERAMEVFETMKRDGVQLNTIIFTTLIKGFAKSFKLDQALEVYQIMKMDDKIKPNNVTF 845

Query: 331  NTLLEAMGKAGKPGLARSLFDEMVE--SGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            N+L++   +      A  +F+EM +  S   PD  T + +IK + + +  + AL +   M
Sbjct: 846  NSLIDCCIRCNSIKKAMEIFEEMKQPISHTKPDLITYSTMIKGFCREKNIQQALIMLNDM 905

Query: 389  RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
             +N    D +LYN+LL+ C     +E A +++++M++    KP N +Y+ ++ IYG   N
Sbjct: 906  EKNNIMADEVLYNSLLDGCCKANEIEMALKVYKNMEILK-IKPSNVTYSILIKIYGKQRN 964

Query: 449  VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD----- 503
            +  A+ + EEM + G+   ++  TCL+Q   K+R++    ++F     +G++ D      
Sbjct: 965  LPKALGVLEEMKKDGIRPGLIVYTCLLQTCIKSRQLKTAEQLFHDMRIQGIRGDQLTYQT 1024

Query: 504  RLCGCLLS 511
             + GCL S
Sbjct: 1025 MINGCLYS 1032



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 148/288 (51%), Gaps = 12/288 (4%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + I +N  +K     ++ QL  ++ N M    ++ +++TY+++I    RCN  + A +  
Sbjct: 583 DEISFNTIIKGCAQEKKLQLAFEMFNLMKMQCLKPNDVTYNSLIDACVRCNRLNSAWQLL 642

Query: 246 ERMYKTGLMPDEVTYSAIL-----DVYAKSG-----KVEEVLSLYERGVAS--GWKPDPI 293
             M +  ++PD  TYS ++     +  +++G      +E+  +L E+   S  G KPD I
Sbjct: 643 SEMQQNNIVPDNFTYSTLIKGIRAENQSQNGISNPMDLEKAFALLEQMKQSNGGVKPDEI 702

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
            ++ L        D +    V QEM+   ++P+ V Y  L++A G A +   A  +F +M
Sbjct: 703 LYNCLIDACVRFHDVNRAVAVFQEMQFSNIKPSSVTYGILIKAYGSANQLDNAFFVFKKM 762

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
            ++ L P+  T   LI    K    + A+E++E M+ +   ++ I++ TL+   A    +
Sbjct: 763 KDNCLIPNSVTYGCLIDACVKNNQIERAMEVFETMKRDGVQLNTIIFTTLIKGFAKSFKL 822

Query: 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461
           ++A  +++ MK+ D  KP+N ++ ++++      ++  A+E+FEEM +
Sbjct: 823 DQALEVYQIMKMDDKIKPNNVTFNSLIDCCIRCNSIKKAMEIFEEMKQ 870



 Score =  102 bits (254), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 136/275 (49%), Gaps = 5/275 (1%)

Query: 170  SYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTII 229
            ++F F  +K   L P  ++ Y   + +     Q +   ++   M  + ++L+ I ++T+I
Sbjct: 755  AFFVFKKMKDNCLIP-NSVTYGCLIDACVKNNQIERAMEVFETMKRDGVQLNTIIFTTLI 813

Query: 230  TCAKRCNLFDEAIEWFERM-YKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYE--RGVAS 286
                +    D+A+E ++ M     + P+ VT+++++D   +   +++ + ++E  +   S
Sbjct: 814  KGFAKSFKLDQALEVYQIMKMDDKIKPNNVTFNSLIDCCIRCNSIKKAMEIFEEMKQPIS 873

Query: 287  GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
              KPD I +S + K F    +      +L +M+   +  + V+YN+LL+   KA +  +A
Sbjct: 874  HTKPDLITYSTMIKGFCREKNIQQALIMLNDMEKNNIMADEVLYNSLLDGCCKANEIEMA 933

Query: 347  RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
              ++  M    + P   T + LIKIYGK R    AL + E M+++      I+Y  LL  
Sbjct: 934  LKVYKNMEILKIKPSNVTYSILIKIYGKQRNLPKALGVLEEMKKDGIRPGLIVYTCLLQT 993

Query: 407  CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
            C     ++ AE+LF DM++    + D  +Y  M+N
Sbjct: 994  CIKSRQLKTAEQLFHDMRIQG-IRGDQLTYQTMIN 1027



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 107/470 (22%), Positives = 199/470 (42%), Gaps = 73/470 (15%)

Query: 191 NVTMKSLRFGRQFQLIEQLANEMVSNEIE----LDNITYSTIITCAKRCNLFDEAIEWFE 246
           N  + SL     F+  EQ+ N++ +   +    +D +T+S +I    R     +A+    
Sbjct: 331 NQMLDSLLKAELFEEAEQIYNKVFTLSKDQPNCMDMMTFSCMIKGYCRAQRLPQALNVLS 390

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
            M + G+ PDEV Y++I+D  +K+ ++ +   LY+  +  G  P  I F+ L      SG
Sbjct: 391 IMKERGIKPDEVLYNSIIDGCSKNNQIAKAFLLYDEMLGEGVTPTTITFNSLIDCCVRSG 450

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM-GKAGKPGLARS--LFDEMVESG-LTPDE 362
           + D    VL++MK   V+P+   Y+TL + +  +  +  L ++  L++++  S   TPDE
Sbjct: 451 NQDQAWRVLEQMKEKQVKPDNYTYSTLFKGIKSENQRQDLEKAFVLYNQLQNSNDFTPDE 510

Query: 363 KTLTALIKIYGKARWAKDALELWERMRENKWPM--------------------------- 395
                L+      +    A+EL+++++    P                            
Sbjct: 511 ILFNVLLDACINCKQLDRAVELFKQLKPQSQPQIQVSNTDDADNSLSLEDSPDSAKNAPA 570

Query: 396 ------------DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC-KPDNYSYTAMLNI 442
                       D I +NT++  CA    ++ A  +F  MK+   C KP++ +Y ++++ 
Sbjct: 571 VVNSSNHHFMRPDEISFNTIIKGCAQEKKLQLAFEMFNLMKMQ--CLKPNDVTYNSLIDA 628

Query: 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID-------DLVRVFGV-- 493
                 +++A +L  EM +  +  +    + LI+ +    +         DL + F +  
Sbjct: 629 CVRCNRLNSAWQLLSEMQQNNIVPDNFTYSTLIKGIRAENQSQNGISNPMDLEKAFALLE 688

Query: 494 ---SIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN-----PKLVAFLNLIE- 544
                + GVKPD+ L  CL+     C    DV + +   Q+       P  V +  LI+ 
Sbjct: 689 QMKQSNGGVKPDEILYNCLIDA---CVRFHDVNRAVAVFQEMQFSNIKPSSVTYGILIKA 745

Query: 545 -DNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELL 593
             ++   +N    F+  +KD  +        CLID C   N  ERA E+ 
Sbjct: 746 YGSANQLDNAFFVFKK-MKDNCLIPNSVTYGCLIDACVKNNQIERAMEVF 794



 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 103/475 (21%), Positives = 192/475 (40%), Gaps = 59/475 (12%)

Query: 177 IKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCN 236
           +K + + P E + YN  +       Q      L +EM+   +    IT++++I C  R  
Sbjct: 392 MKERGIKPDE-VLYNSIIDGCSKNNQIAKAFLLYDEMLGEGVTPTTITFNSLIDCCVRSG 450

Query: 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK---VEEVLSLYER-GVASGWKPDP 292
             D+A    E+M +  + PD  TYS +        +   +E+   LY +   ++ + PD 
Sbjct: 451 NQDQAWRVLEQMKEKQVKPDNYTYSTLFKGIKSENQRQDLEKAFVLYNQLQNSNDFTPDE 510

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMK-----------------SLGVQ----------- 324
           I F+VL          D    + +++K                 SL ++           
Sbjct: 511 ILFNVLLDACINCKQLDRAVELFKQLKPQSQPQIQVSNTDDADNSLSLEDSPDSAKNAPA 570

Query: 325 -----------PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYG 373
                      P+ + +NT+++   +  K  LA  +F+ M    L P++ T  +LI    
Sbjct: 571 VVNSSNHHFMRPDEISFNTIIKGCAQEKKLQLAFEMFNLMKMQCLKPNDVTYNSLIDACV 630

Query: 374 KARWAKDALELWERMRENKWPMDFILYNTLL----------NMCADIGLVEEAERLFEDM 423
           +      A +L   M++N    D   Y+TL+          N  ++   +E+A  L E M
Sbjct: 631 RCNRLNSAWQLLSEMQQNNIVPDNFTYSTLIKGIRAENQSQNGISNPMDLEKAFALLEQM 690

Query: 424 KLSDY-CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKAR 482
           K S+   KPD   Y  +++      +V+ A+ +F+EM    +  + +    LI+  G A 
Sbjct: 691 KQSNGGVKPDEILYNCLIDACVRFHDVNRAVAVFQEMQFSNIKPSSVTYGILIKAYGSAN 750

Query: 483 RIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKL--VAFL 540
           ++D+   VF    D  + P+    GCL+         E   +V   +++   +L  + F 
Sbjct: 751 QLDNAFFVFKKMKDNCLIPNSVTYGCLIDACVKNNQIERAMEVFETMKRDGVQLNTIIFT 810

Query: 541 NLIEDNSTGF--ENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELL 593
            LI+  +  F  +   E ++ +  D ++       N LID C   N  ++A E+ 
Sbjct: 811 TLIKGFAKSFKLDQALEVYQIMKMDDKIKPNNVTFNSLIDCCIRCNSIKKAMEIF 865



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 128/282 (45%), Gaps = 29/282 (10%)

Query: 197 LRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK---RCNLFDEAIEWFERMYKTGL 253
            R G+Q      L  E V N    D +  ST+    K   R N    A+++F ++ +T  
Sbjct: 265 FRNGKQ-----NLVQEAVHNAKRTDFLASSTLKIFVKYYSRLNQTQTALQYFHQLQQTSQ 319

Query: 254 MPDEVTY----SAILDVYAKSGKVEEVLSLYERGVA-SGWKP---DPIAFSVLGKMFGES 305
             ++ TY    + +LD   K+   EE   +Y +    S  +P   D + FS + K +  +
Sbjct: 320 AQNDPTYYQTVNQMLDSLLKAELFEEAEQIYNKVFTLSKDQPNCMDMMTFSCMIKGYCRA 379

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
                   VL  MK  G++P+ V+YN++++   K  +   A  L+DEM+  G+TP   T 
Sbjct: 380 QRLPQALNVLSIMKERGIKPDEVLYNSIIDGCSKNNQIAKAFLLYDEMLGEGVTPTTITF 439

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAER------- 418
            +LI    ++     A  + E+M+E +   D   Y+TL       G+  E +R       
Sbjct: 440 NSLIDCCVRSGNQDQAWRVLEQMKEKQVKPDNYTYSTLFK-----GIKSENQRQDLEKAF 494

Query: 419 -LFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
            L+  ++ S+   PD   +  +L+   +   +D A+ELF+++
Sbjct: 495 VLYNQLQNSNDFTPDEILFNVLLDACINCKQLDRAVELFKQL 536


>gi|413937324|gb|AFW71875.1| hypothetical protein ZEAMMB73_225396 [Zea mays]
          Length = 818

 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 85/298 (28%), Positives = 149/298 (50%), Gaps = 1/298 (0%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + Y   +KSL    +++ +E+L  EM SN    D +T++TI+T   +  L D AIE  
Sbjct: 355 DAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIEVV 414

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           + M + G + D VTYS+ILD     G+V++ + L  R  + G KPD IA++ + K    +
Sbjct: 415 DHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCST 474

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
             ++    ++ EM      P+ V +NT++ ++ + G    A  + ++M E+G +PD  T 
Sbjct: 475 EQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTY 534

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
             +I          DA+EL   ++      D + +NTLL     +   E+AE+L  +M  
Sbjct: 535 NCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQLMANMMR 594

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483
           S+ C PD  ++  ++      G +  AIE  + M+E G   N    + ++  L KA +
Sbjct: 595 SN-CPPDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVPNSSTYSIVVDALLKAGK 651



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 150/331 (45%), Gaps = 4/331 (1%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
             + +KS    P +TI Y   +K L    Q++  E+L  EM+ ++   D +T++T++   
Sbjct: 448 LLSRLKSYGCKP-DTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASL 506

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +  L D AI   E+M + G  PD VTY+ I+D       +++ + L     + G KPD 
Sbjct: 507 CQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDI 566

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           + F+ L K       ++    ++  M      P+ + +NT++ ++ + G    A      
Sbjct: 567 VTFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKI 626

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M E+G  P+  T + ++    KA  A+ ALEL   M  N  P D I YNT+++     G 
Sbjct: 627 MAENGCVPNSSTYSIVVDALLKAGKAQAALELLSGM-TNGTP-DLITYNTVISNLTKAGK 684

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
           +EEA  L   M  +  C PD  +Y ++          D A+ +   + + G++ +     
Sbjct: 685 MEEALDLLRVMVSNGLC-PDTTTYRSLAYGVCREDGTDRAVRMLRRVQDTGLSPDTTFYN 743

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
            ++    + RR D  +  F   +  G  PD+
Sbjct: 744 DVLLGFCRDRRTDLAIDCFAHMVSSGCMPDE 774



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 110/456 (24%), Positives = 194/456 (42%), Gaps = 18/456 (3%)

Query: 182 LFPMETIF-YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDE 240
           L P  T+  YN  +       + +   +L N M       D  T++ +I          +
Sbjct: 213 LGPSATVVTYNTMVNGYCRAGRIEDARRLINGM---PFPPDTFTFNPLIRALCVRGRIPD 269

Query: 241 AIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGK 300
           A+  F+ M   G  P  VTYS +LD   K     + ++L +   A G +PD + ++VL  
Sbjct: 270 ALAVFDDMLHRGCSPSVVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLIN 329

Query: 301 MFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTP 360
                GD D    +L  + S G +P+ V Y  +L+++  + +      L  EM  +   P
Sbjct: 330 AMCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAP 389

Query: 361 DEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLF 420
           DE T   ++    +      A+E+ + M E+    D + Y+++L+   D+G V++A  L 
Sbjct: 390 DEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELL 449

Query: 421 EDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK 480
             +K S  CKPD  +YT +L    S    + A EL  EM       + +    ++  L +
Sbjct: 450 SRLK-SYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQ 508

Query: 481 ARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETS--EDVGKVITCLQQAN--PKL 536
              +D  +RV     + G  PD     C++    LC  S  +D  ++++ LQ     P +
Sbjct: 509 KGLVDRAIRVVEQMSENGCSPDIVTYNCIID--GLCNESCIDDAMELLSDLQSCGCKPDI 566

Query: 537 VAFLNLIED--NSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLY 594
           V F  L++       +E+ ++   N+++         F   +  +C+ + L  +A E L 
Sbjct: 567 VTFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVITSLCQ-KGLLTQAIETLK 625

Query: 595 LGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALE 630
           +    G  P     ++   +L    L  G AQ ALE
Sbjct: 626 IMAENGCVPNSSTYSIVVDAL----LKAGKAQAALE 657



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 121/282 (42%), Gaps = 44/282 (15%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + +N  +K L    +++  EQL   M+ +    D +T++T+IT   +  L  +AIE  
Sbjct: 565 DIVTFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETL 624

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           + M + G +P+  TYS ++D   K+GK +  L L   G+ +G                  
Sbjct: 625 KIMAENGCVPNSSTYSIVVDALLKAGKAQAALELLS-GMTNG------------------ 665

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
                              P+L+ YNT++  + KAGK   A  L   MV +GL PD  T 
Sbjct: 666 ------------------TPDLITYNTVISNLTKAGKMEEALDLLRVMVSNGLCPDTTTY 707

Query: 366 TALIKIYGKAR--WAKDALELWERMRENKWPMDFILYN-TLLNMCADIGLVEEAERLFED 422
            +L   YG  R      A+ +  R+++     D   YN  LL  C D    + A   F  
Sbjct: 708 RSLA--YGVCREDGTDRAVRMLRRVQDTGLSPDTTFYNDVLLGFCRD-RRTDLAIDCFAH 764

Query: 423 MKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
           M +S  C PD  +Y  +L     GG +D A  L   +  LGV
Sbjct: 765 M-VSSGCMPDESTYVILLEALAYGGLLDEAKRLLASLCSLGV 805



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 117/303 (38%), Gaps = 73/303 (24%)

Query: 269 KSGKVEEVLSLYERGVASGWK--PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
           + G+++E L L++   + G +  P  +  ++L K     G       V     +LG    
Sbjct: 162 QRGEIDEALVLFDSMASGGGRNCPPVVPCNILIKRLCSDGRVSDAERVF---AALGPSAT 218

Query: 327 LVVYNTLLEAMGKAGKPGLARSL--------------------------------FDEMV 354
           +V YNT++    +AG+   AR L                                FD+M+
Sbjct: 219 VVTYNTMVNGYCRAGRIEDARRLINGMPFPPDTFTFNPLIRALCVRGRIPDALAVFDDML 278

Query: 355 ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
             G +P   T + L+    K    + A+ L + MR      D + YN L+N   + G V+
Sbjct: 279 HRGCSPSVVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAMCNEGDVD 338

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAML-NIYGS---------------------------- 445
           EA  +  ++  S  CKPD  +YT +L ++ GS                            
Sbjct: 339 EALNILSNLP-SHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVTFNTI 397

Query: 446 ------GGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGV 499
                  G VD AIE+ + MSE G   +++  + ++  L    R+DD V +       G 
Sbjct: 398 VTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRLKSYGC 457

Query: 500 KPD 502
           KPD
Sbjct: 458 KPD 460


>gi|297805766|ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
 gi|297316603|gb|EFH47026.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
          Length = 747

 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 157/314 (50%), Gaps = 2/314 (0%)

Query: 190 YNVTM-KSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERM 248
           YN  +  ++R  R     E +  EM+ +++  +  TY+ +I         D A+ +F+RM
Sbjct: 172 YNAVLDATIRSKRNISFAENVFKEMLQSQVSPNVFTYNILIRGFCLAGNLDVALRFFDRM 231

Query: 249 YKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY 308
            K G +P+ VTY+ ++D Y K  K+++   L       G +P+ I+++V+       G  
Sbjct: 232 EKKGCLPNVVTYNTLIDGYCKLRKIDDGFELLRSMALKGLEPNLISYNVVINGLCREGRM 291

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
             I +VL EM   G   + V YNTL++   K G    A  +  EM+  GL+P   T T+L
Sbjct: 292 KEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLSPSVITYTSL 351

Query: 369 IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428
           I    KA     A E  ++MR      +   Y TL++  +  G + EA R+ ++M + + 
Sbjct: 352 IHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLKEM-IDNG 410

Query: 429 CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLV 488
             P   +Y A++N +   G + +AI + E+M E G+  +V+  + ++    ++  +D+ +
Sbjct: 411 FSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEAL 470

Query: 489 RVFGVSIDRGVKPD 502
           RV    + +G+KPD
Sbjct: 471 RVKRKMVAKGIKPD 484



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 93/321 (28%), Positives = 157/321 (48%), Gaps = 5/321 (1%)

Query: 174 FNWIKSQNLFPME--TIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIIT 230
           F  ++S  L  +E   I YNV +  L R GR  + I  +  EM      LD +TY+T+I 
Sbjct: 260 FELLRSMALKGLEPNLISYNVVINGLCREGRMKE-ISFVLTEMNKRGYSLDEVTYNTLIK 318

Query: 231 CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
              +   F +A+     M + GL P  +TY++++    K+G +       ++    G  P
Sbjct: 319 GYCKEGNFHQALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCP 378

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
           +   ++ L   F + G  +    VL+EM   G  P++V YN L+     AGK   A ++ 
Sbjct: 379 NERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVL 438

Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
           ++M E GLTPD  + + ++  + ++    +AL +  +M       D I Y++L+    + 
Sbjct: 439 EDMKEKGLTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQ 498

Query: 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG 470
              +EA  LF++M L     PD ++YTA++N Y   G++  AI+L  EM E GV  +V+ 
Sbjct: 499 RRTKEACDLFDEM-LRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVT 557

Query: 471 CTCLIQCLGKARRIDDLVRVF 491
            + LI  L K  R  +  R+ 
Sbjct: 558 YSVLINGLNKQARTREAKRLL 578



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/297 (29%), Positives = 143/297 (48%), Gaps = 18/297 (6%)

Query: 212 EMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG 271
           EM+ N      +TY+ +I          +AI   E M + GL PD V+YS +L  + +S 
Sbjct: 405 EMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSGFCRSY 464

Query: 272 KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYN 331
            V+E L +  + VA G KPD I +S L + F E         +  EM  +G+ P+   Y 
Sbjct: 465 DVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVGLPPDEFTYT 524

Query: 332 TLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM-RE 390
            L+ A    G    A  L +EMVE G+ PD  T + LI    K    ++A  L  ++  E
Sbjct: 525 ALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTYSVLINGLNKQARTREAKRLLLKLFYE 584

Query: 391 NKWPMDFILYNTLLNMCADI---------------GLVEEAERLFEDMKLSDYCKPDNYS 435
              P D + Y+TL+  C++I               G++ EA+++FE M L    KPD  +
Sbjct: 585 ESVPSD-VTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESM-LEKNHKPDGTA 642

Query: 436 YTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFG 492
           Y  M++ +  GG++  A  L++EM + G  ++ +    L++ L K  ++++L  V  
Sbjct: 643 YNVMIHGHCRGGDIRKAYSLYKEMVKSGFLLHTVTVIALVKTLHKEGKVNELNSVIA 699



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 64/279 (22%), Positives = 121/279 (43%), Gaps = 2/279 (0%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK-VEEVLSLYER 282
            +  ++    R  L D+A+         G MP  ++Y+A+LD   +S + +    ++++ 
Sbjct: 136 VFDLVVKSYSRLCLIDKALSIVHLSQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKE 195

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
            + S   P+   +++L + F  +G+ D        M+  G  PN+V YNTL++   K  K
Sbjct: 196 MLQSQVSPNVFTYNILIRGFCLAGNLDVALRFFDRMEKKGCLPNVVTYNTLIDGYCKLRK 255

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
                 L   M   GL P+  +   +I    +    K+   +   M +  + +D + YNT
Sbjct: 256 IDDGFELLRSMALKGLEPNLISYNVVINGLCREGRMKEISFVLTEMNKRGYSLDEVTYNT 315

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
           L+      G   +A  +  +M L     P   +YT++++     GN++ A E  ++M   
Sbjct: 316 LIKGYCKEGNFHQALVMHAEM-LRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVR 374

Query: 463 GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
           G+  N    T L+    +   +++  RV    ID G  P
Sbjct: 375 GLCPNERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSP 413



 Score = 44.3 bits (103), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 41/201 (20%), Positives = 80/201 (39%), Gaps = 15/201 (7%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD-- 265
           QL NEMV   +  D +TYS +I    +     EA     +++    +P +VTY  +++  
Sbjct: 541 QLHNEMVEKGVLPDVVTYSVLINGLNKQARTREAKRLLLKLFYEESVPSDVTYHTLIENC 600

Query: 266 -------------VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIR 312
                         +   G + E   ++E  +    KPD  A++V+       GD     
Sbjct: 601 SNIEFKSVVSLIKGFCMKGMMTEADQVFESMLEKNHKPDGTAYNVMIHGHCRGGDIRKAY 660

Query: 313 YVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIY 372
            + +EM   G   + V    L++ + K GK     S+   ++ S    + +    L++I 
Sbjct: 661 SLYKEMVKSGFLLHTVTVIALVKTLHKEGKVNELNSVIANVLRSCELSEAEQAKVLVEIN 720

Query: 373 GKARWAKDALELWERMRENKW 393
            +       L++   M ++ +
Sbjct: 721 HREGNMDVVLDVLAEMAKDGF 741



 Score = 42.4 bits (98), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 31/146 (21%), Positives = 61/146 (41%), Gaps = 3/146 (2%)

Query: 222 NITYSTIITCAKR-C--NLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS 278
           NI + ++++  K  C   +  EA + FE M +    PD   Y+ ++  + + G + +  S
Sbjct: 602 NIEFKSVVSLIKGFCMKGMMTEADQVFESMLEKNHKPDGTAYNVMIHGHCRGGDIRKAYS 661

Query: 279 LYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMG 338
           LY+  V SG+    +    L K   + G  + +  V+  +              L+E   
Sbjct: 662 LYKEMVKSGFLLHTVTVIALVKTLHKEGKVNELNSVIANVLRSCELSEAEQAKVLVEINH 721

Query: 339 KAGKPGLARSLFDEMVESGLTPDEKT 364
           + G   +   +  EM + G  P+ K+
Sbjct: 722 REGNMDVVLDVLAEMAKDGFLPNGKS 747



 Score = 39.7 bits (91), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 52/120 (43%)

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
           +Q+   M+    + D   Y+ +I    R     +A   ++ M K+G +   VT  A++  
Sbjct: 625 DQVFESMLEKNHKPDGTAYNVMIHGHCRGGDIRKAYSLYKEMVKSGFLLHTVTVIALVKT 684

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
             K GKV E+ S+    + S    +     VL ++    G+ D +  VL EM   G  PN
Sbjct: 685 LHKEGKVNELNSVIANVLRSCELSEAEQAKVLVEINHREGNMDVVLDVLAEMAKDGFLPN 744


>gi|363543233|ref|NP_001241831.1| uncharacterized protein LOC100857030 [Zea mays]
 gi|224033903|gb|ACN36027.1| unknown [Zea mays]
          Length = 655

 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 97/371 (26%), Positives = 169/371 (45%), Gaps = 40/371 (10%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + YN  +K L   +++  +++L  EMV      + +T++T+I+   R  LF+   E  
Sbjct: 226 DVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVL 285

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP--------------- 290
            +M + G  PD   Y+ I+D   K G +E    +  R  + G KP               
Sbjct: 286 AQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSA 345

Query: 291 --------------------DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
                               D + F++L   F ++G  D +  +L++M   G  P+++ Y
Sbjct: 346 ERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLERGCMPDVITY 405

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA-RWAKDALELWERMR 389
            T++    K G    A  L   M   G  P+  + T ++K    A RW  DA +L  +M 
Sbjct: 406 TTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWV-DAEDLMSQMI 464

Query: 390 ENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNV 449
           +   P++ I +NTL+N     GLVE+A  L + M L + C PD  SY+ +++  G  G  
Sbjct: 465 QQGCPLNPITFNTLINFLCKKGLVEQAIELLKQM-LVNGCSPDLISYSTVIDGLGKAGKT 523

Query: 450 DNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCL 509
           D A+EL   M   G++ N +  + +   L +  RI+ ++++F    D  ++ D  L   +
Sbjct: 524 DEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAV 583

Query: 510 LSVVSLCETSE 520
           +S  SLC+  E
Sbjct: 584 IS--SLCKRGE 592



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/331 (23%), Positives = 149/331 (45%), Gaps = 37/331 (11%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           + ++   N + S  L P   + YN  +K L    +++  E+L  EM   +  LD++T++ 
Sbjct: 314 EVAHEILNRMPSYGLKP-NVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNI 372

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           ++    +  L D  IE  E+M + G MPD +TY+ +++ + K G ++E + L +   A G
Sbjct: 373 LVDFFCQNGLVDRVIELLEQMLERGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACG 432

Query: 288 WKP-----------------------------------DPIAFSVLGKMFGESGDYDGIR 312
            KP                                   +PI F+ L     + G  +   
Sbjct: 433 CKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAI 492

Query: 313 YVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIY 372
            +L++M   G  P+L+ Y+T+++ +GKAGK   A  L + MV  G++P+    +++    
Sbjct: 493 ELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASAL 552

Query: 373 GKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPD 432
            +       +++++ +++     D +LYN +++     G  E A      M +S  C P+
Sbjct: 553 SREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYM-VSSGCVPN 611

Query: 433 NYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
             +YT ++    S G V  A E+  E+   G
Sbjct: 612 ESTYTILIRGLASEGFVKEAQEMLTELCSKG 642



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 125/278 (44%), Gaps = 1/278 (0%)

Query: 225 YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
           Y  I+  A R   F  A+   E ++  G   D    + +L+     G V+E L L     
Sbjct: 160 YHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDEALHLLRDLP 219

Query: 285 ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344
           + G +PD ++++ + K    +  +  ++ +++EM  +   PN+V +NTL+  + + G   
Sbjct: 220 SFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFE 279

Query: 345 LARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
               +  +MVE G TPD +    +I    K    + A E+  RM       + + YNTLL
Sbjct: 280 RVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLL 339

Query: 405 NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
                    EE E L  +M   D C  D+ ++  +++ +   G VD  IEL E+M E G 
Sbjct: 340 KGLCSAERWEETEELLAEMFDKD-CPLDDVTFNILVDFFCQNGLVDRVIELLEQMLERGC 398

Query: 465 AINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
             +V+  T +I    K   ID+ V +       G KP+
Sbjct: 399 MPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPN 436



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 64/302 (21%), Positives = 139/302 (46%), Gaps = 1/302 (0%)

Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS 261
             ++  ++ N M S  ++ + + Y+T++        ++E  E    M+      D+VT++
Sbjct: 312 HLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFN 371

Query: 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
            ++D + ++G V+ V+ L E+ +  G  PD I ++ +   F + G  D    +L+ M + 
Sbjct: 372 ILVDFFCQNGLVDRVIELLEQMLERGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTAC 431

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
           G +PN + Y  +L+ +  A +   A  L  +M++ G   +  T   LI    K    + A
Sbjct: 432 GCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQA 491

Query: 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
           +EL ++M  N    D I Y+T+++     G  +EA  L   M ++    P+   Y+++ +
Sbjct: 492 IELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVM-VNKGMSPNTIIYSSIAS 550

Query: 442 IYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
                G ++  I++F+ + +  +  + +    +I  L K    +  +      +  G  P
Sbjct: 551 ALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVP 610

Query: 502 DD 503
           ++
Sbjct: 611 NE 612



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 55/249 (22%), Positives = 104/249 (41%), Gaps = 1/249 (0%)

Query: 255 PDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYV 314
           P+  TY  ++      G++ + L++ +     G  P P  + V+ +     G +     V
Sbjct: 120 PNAYTYFPVVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRV 179

Query: 315 LQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK 374
           L+++ + G   ++   N +L A+   G    A  L  ++   G  PD  +  A++K    
Sbjct: 180 LEDLHARGCALDVGNCNLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCM 239

Query: 375 ARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNY 434
           A+      EL E M     P + + +NTL++     GL E    +   M +   C PD  
Sbjct: 240 AKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQM-VEHGCTPDIR 298

Query: 435 SYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVS 494
            Y  +++     G+++ A E+   M   G+  NV+    L++ L  A R ++   +    
Sbjct: 299 MYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEM 358

Query: 495 IDRGVKPDD 503
            D+    DD
Sbjct: 359 FDKDCPLDD 367



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 76/183 (41%), Gaps = 1/183 (0%)

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382
           V PN   Y  ++ A+   G+   A ++ DEM   G  P       +++   +    + A+
Sbjct: 118 VPPNAYTYFPVVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAV 177

Query: 383 ELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNI 442
            + E +      +D    N +LN   D G V+EA  L  D+  S  C+PD  SY A+L  
Sbjct: 178 RVLEDLHARGCALDVGNCNLVLNAICDQGSVDEALHLLRDLP-SFGCEPDVVSYNAVLKG 236

Query: 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
                      EL EEM  +    N++    LI  L +    + +  V    ++ G  PD
Sbjct: 237 LCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPD 296

Query: 503 DRL 505
            R+
Sbjct: 297 IRM 299


>gi|168033824|ref|XP_001769414.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162679334|gb|EDQ65783.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 410

 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 82/275 (29%), Positives = 136/275 (49%), Gaps = 2/275 (0%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F  +K   + P + I YN  + +      F    Q+  EM +     + I+Y+T+I   
Sbjct: 123 LFEEMKQAGVQPND-ITYNCMVNACVCLSLFDTASQILKEMKAVNCLPNVISYTTMINSL 181

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            R    DEA+E FE M + G  P+  TY+++L  YA+ G+ E+ + L+      G  PD 
Sbjct: 182 GRSGRLDEAVELFEEMKELGRSPNSWTYNSLLKAYAREGRYEKAMCLFVGMEDEGCIPDL 241

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
             ++ +  M G  G +     V  EM+  G  P+ V YNT+L+A  K  + G AR L   
Sbjct: 242 YTYNTVIDMCGRGGLFAEAEGVFLEMQRKGCTPDRVTYNTMLDAYSKWSRRGRARDLLKT 301

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M  +G TPD  T   L+   GKA  A +A++++  ++      + + ++ L+NM   +G 
Sbjct: 302 MKRAGCTPDLWTYNILLDAAGKAGSASEAMQIFHELKAAGHSPNLVSFSALINMYGRLGY 361

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
            EEAER + +M+ +  C P+  +Y  ++N Y   G
Sbjct: 362 FEEAERAWVEMRATG-CVPNATAYCGLMNSYSHHG 395



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 136/290 (46%), Gaps = 5/290 (1%)

Query: 179 SQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLF 238
           S N+    T+    T ++ R      L E    EM    ++ ++ITY+ ++      +LF
Sbjct: 97  SPNVLTYNTLINACTKRAYRLPDLVGLFE----EMKQAGVQPNDITYNCMVNACVCLSLF 152

Query: 239 DEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
           D A +  + M     +P+ ++Y+ +++   +SG+++E + L+E     G  P+   ++ L
Sbjct: 153 DTASQILKEMKAVNCLPNVISYTTMINSLGRSGRLDEAVELFEEMKELGRSPNSWTYNSL 212

Query: 299 GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
            K +   G Y+    +   M+  G  P+L  YNT+++  G+ G    A  +F EM   G 
Sbjct: 213 LKAYAREGRYEKAMCLFVGMEDEGCIPDLYTYNTVIDMCGRGGLFAEAEGVFLEMQRKGC 272

Query: 359 TPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAER 418
           TPD  T   ++  Y K      A +L + M+      D   YN LL+     G   EA +
Sbjct: 273 TPDRVTYNTMLDAYSKWSRRGRARDLLKTMKRAGCTPDLWTYNILLDAAGKAGSASEAMQ 332

Query: 419 LFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINV 468
           +F ++K + +  P+  S++A++N+YG  G  + A   + EM   G   N 
Sbjct: 333 IFHELKAAGH-SPNLVSFSALINMYGRLGYFEEAERAWVEMRATGCVPNA 381



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 87/322 (27%), Positives = 142/322 (44%), Gaps = 37/322 (11%)

Query: 217 EIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV 276
           E EL      TII+   R      A E FE M K G+ P    Y+A+L  YAK G ++E 
Sbjct: 25  EYELKEHNCVTIISILGREGKLGLAREIFEGMSKAGVAPSVHAYTALLSGYAKQGLLKEA 84

Query: 277 LSLYERGVASGWKPDPIAFSV--------------LGKMFGESGD--------------- 307
            +L+E     G  P+ + ++               L  +F E                  
Sbjct: 85  WALFEAMKEKGCSPNVLTYNTLINACTKRAYRLPDLVGLFEEMKQAGVQPNDITYNCMVN 144

Query: 308 -------YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTP 360
                  +D    +L+EMK++   PN++ Y T++ ++G++G+   A  LF+EM E G +P
Sbjct: 145 ACVCLSLFDTASQILKEMKAVNCLPNVISYTTMINSLGRSGRLDEAVELFEEMKELGRSP 204

Query: 361 DEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLF 420
           +  T  +L+K Y +    + A+ L+  M +     D   YNT+++MC   GL  EAE +F
Sbjct: 205 NSWTYNSLLKAYAREGRYEKAMCLFVGMEDEGCIPDLYTYNTVIDMCGRGGLFAEAEGVF 264

Query: 421 EDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK 480
            +M+    C PD  +Y  ML+ Y        A +L + M   G   ++     L+   GK
Sbjct: 265 LEMQRKG-CTPDRVTYNTMLDAYSKWSRRGRARDLLKTMKRAGCTPDLWTYNILLDAAGK 323

Query: 481 ARRIDDLVRVFGVSIDRGVKPD 502
           A    + +++F      G  P+
Sbjct: 324 AGSASEAMQIFHELKAAGHSPN 345



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/373 (22%), Positives = 171/373 (45%), Gaps = 53/373 (14%)

Query: 198 RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDE 257
           + G   ++ E ++   V+  +      Y+ +++   +  L  EA   FE M + G  P+ 
Sbjct: 45  KLGLAREIFEGMSKAGVAPSVH----AYTALLSGYAKQGLLKEAWALFEAMKEKGCSPNV 100

Query: 258 VTYSAILDVYAKSG-KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQ 316
           +TY+ +++   K   ++ +++ L+E    +G +P+ I ++ +         +D    +L+
Sbjct: 101 LTYNTLINACTKRAYRLPDLVGLFEEMKQAGVQPNDITYNCMVNACVCLSLFDTASQILK 160

Query: 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
           EMK++   PN++ Y T++ ++G++G+   A  LF+EM E G +P+  T  +L+K Y +  
Sbjct: 161 EMKAVNCLPNVISYTTMINSLGRSGRLDEAVELFEEMKELGRSPNSWTYNSLLKAYAREG 220

Query: 377 WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK------------ 424
             + A+ L+  M +     D   YNT+++MC   GL  EAE +F +M+            
Sbjct: 221 RYEKAMCLFVGMEDEGCIPDLYTYNTVIDMCGRGGLFAEAEGVFLEMQRKGCTPDRVTYN 280

Query: 425 --LSDY--------------------CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
             L  Y                    C PD ++Y  +L+  G  G+   A+++F E+   
Sbjct: 281 TMLDAYSKWSRRGRARDLLKTMKRAGCTPDLWTYNILLDAAGKAGSASEAMQIFHELKAA 340

Query: 463 GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCE----- 517
           G + N++  + LI   G+    ++  R +          + R  GC+ +  + C      
Sbjct: 341 GHSPNLVSFSALINMYGRLGYFEEAERAW---------VEMRATGCVPNATAYCGLMNSY 391

Query: 518 TSEDVGKVITCLQ 530
           +   + KV+ C++
Sbjct: 392 SHHGMYKVLCCIR 404


>gi|168004269|ref|XP_001754834.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162693938|gb|EDQ80288.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 504

 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 100/411 (24%), Positives = 178/411 (43%), Gaps = 49/411 (11%)

Query: 165 KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNI- 223
           K W+++   F+ +K     P ET F NV + +   G Q +  E+L +EM  +      + 
Sbjct: 97  KQWREAEKTFHLMKDFQCLPTETSF-NVLLAAYSRGVQLEKAEKLFHEMKESNYSPGTVE 155

Query: 224 --------TYSTIITCAKRCNLFDEAIEWFERMYKTGLMP-------------------- 255
                   TY+T +    +     +A + F  M K G++P                    
Sbjct: 156 WMIFSGIATYNTYLEVLGKSGRLSQAEDTFRDMQKQGILPAVNTFTIMINIYGKAYYSDK 215

Query: 256 -DEV--------------TYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGK 300
            D++              TY+A+++ +A+ G       ++    + G+ PD   ++ L +
Sbjct: 216 ADDLFRSMRKALCPPNLYTYTALMNAHAREGNCVRAEEIFAELQSVGFIPDVYTYNALLE 275

Query: 301 MFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTP 360
            +       G + V Q M   GV+P+ V YN L++A G+AG    A++++D M E+G  P
Sbjct: 276 AYSRGEHPTGAKEVFQAMVEAGVRPDQVSYNILIDAFGRAGLTADAQAVYDSMKEAGFKP 335

Query: 361 DEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLF 420
             K+   L+  Y KA    +A  L   +  +    D  ++N+LL+   + G ++E E L 
Sbjct: 336 TMKSHMLLLSSYAKAGKVTEAERLVREIENSGVKPDTFMFNSLLSAYGNSGRIDEMESLL 395

Query: 421 EDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK 480
           E M +S   KPD  +   ++N Y  GG ++ A E+F  +   G+  +VM  T L+    +
Sbjct: 396 ESM-VSSVAKPDISTLNTLINAYAQGGYIEKAEEVFNSLESKGLTPDVMSWTSLMGAYAQ 454

Query: 481 ARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ 531
            +     V +F   +  G  PD       LS    C + E V +V   +++
Sbjct: 455 RKLFRKCVSIFQKMVKAGCIPDRATAKVFLSS---CRSPEQVKEVTDMIER 502



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/279 (28%), Positives = 123/279 (44%), Gaps = 12/279 (4%)

Query: 242 IEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKM 301
           +EW   +  T   PD   ++ ++D Y KS +  E    +         P   +F+VL   
Sbjct: 70  LEWI--LQGTMFKPDVGCFNMLIDAYGKSKQWREAEKTFHLMKDFQCLPTETSFNVLLAA 127

Query: 302 FGESGDYDGIRYVLQEMKSLGVQPNLV---------VYNTLLEAMGKAGKPGLARSLFDE 352
           +      +    +  EMK     P  V          YNT LE +GK+G+   A   F +
Sbjct: 128 YSRGVQLEKAEKLFHEMKESNYSPGTVEWMIFSGIATYNTYLEVLGKSGRLSQAEDTFRD 187

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M + G+ P   T T +I IYGKA ++  A +L+  MR+   P +   Y  L+N  A  G 
Sbjct: 188 MQKQGILPAVNTFTIMINIYGKAYYSDKADDLFRSMRKALCPPNLYTYTALMNAHAREGN 247

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
              AE +F +++   +  PD Y+Y A+L  Y  G +   A E+F+ M E GV  + +   
Sbjct: 248 CVRAEEIFAELQSVGFI-PDVYTYNALLEAYSRGEHPTGAKEVFQAMVEAGVRPDQVSYN 306

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
            LI   G+A    D   V+    + G KP  +    LLS
Sbjct: 307 ILIDAFGRAGLTADAQAVYDSMKEAGFKPTMKSHMLLLS 345



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 101/252 (40%), Gaps = 36/252 (14%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F  ++S    P +   YN  +++   G      +++   MV   +  D ++Y+ +I   
Sbjct: 254 IFAELQSVGFIP-DVYTYNALLEAYSRGEHPTGAKEVFQAMVEAGVRPDQVSYNILIDAF 312

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            R  L  +A   ++ M + G  P   ++  +L  YAK+GKV E   L      SG KPD 
Sbjct: 313 GRAGLTADAQAVYDSMKEAGFKPTMKSHMLLLSSYAKAGKVTEAERLVREIENSGVKPDT 372

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA---------------- 336
             F+ L   +G SG  D +  +L+ M S   +P++   NTL+ A                
Sbjct: 373 FMFNSLLSAYGNSGRIDEMESLLESMVSSVAKPDISTLNTLINAYAQGGYIEKAEEVFNS 432

Query: 337 ----------------MGKAGKPGLAR---SLFDEMVESGLTPDEKTLTALIKIYGKARW 377
                           MG   +  L R   S+F +MV++G  PD  T    +        
Sbjct: 433 LESKGLTPDVMSWTSLMGAYAQRKLFRKCVSIFQKMVKAGCIPDRATAKVFLSSCRSPEQ 492

Query: 378 AKDALELWERMR 389
            K+  ++ ER R
Sbjct: 493 VKEVTDMIERHR 504



 Score = 47.0 bits (110), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 35/156 (22%), Positives = 77/156 (49%), Gaps = 4/156 (2%)

Query: 139 EAFLRAITEIPHQPTRENALLILNSLKFWQK---SYFFFNWIKSQNLFPMETIFYNVTMK 195
           +A   ++ E   +PT ++ +L+L+S     K   +      I++  + P +T  +N  + 
Sbjct: 322 QAVYDSMKEAGFKPTMKSHMLLLSSYAKAGKVTEAERLVREIENSGVKP-DTFMFNSLLS 380

Query: 196 SLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMP 255
           +     +   +E L   MVS+  + D  T +T+I    +    ++A E F  +   GL P
Sbjct: 381 AYGNSGRIDEMESLLESMVSSVAKPDISTLNTLINAYAQGGYIEKAEEVFNSLESKGLTP 440

Query: 256 DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291
           D +++++++  YA+     + +S++++ V +G  PD
Sbjct: 441 DVMSWTSLMGAYAQRKLFRKCVSIFQKMVKAGCIPD 476


>gi|410110141|gb|AFV61150.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           turbinata]
          Length = 441

 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 93/295 (31%), Positives = 151/295 (51%), Gaps = 7/295 (2%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L +EM    +  D  TYST+IT   +  LFD A+ W ++M +  +  D V YS ++++  
Sbjct: 3   LFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELSR 62

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           K     + +S++ R   SG+ PD +A++ +  +FG++  +   R ++ EMK+ GV PN  
Sbjct: 63  KLCDYSKAISIFSRLKXSGFXPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTT 122

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            Y+TLL    +  K   A S+F EM E     D  T   +I +YG+   AK+A +L+  M
Sbjct: 123 SYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM 182

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
           R+     + + YNTLL +  D  L  EA  LF  M+  +  + +  +Y +M+ IYG    
Sbjct: 183 RKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKN-IEQNVVTYNSMMMIYGKTLE 241

Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF------GVSIDR 497
            + A  L +EM   GV  N +  + +I   GK  ++D    +F      GV ID+
Sbjct: 242 HEKANNLIQEMQSRGVEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQ 296



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 82/367 (22%), Positives = 171/367 (46%), Gaps = 6/367 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K     P + + YN  +      + F+    L +EM +  +  +  +YS
Sbjct: 67  YSKAISIFSRLKXSGFXP-DLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYS 125

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY + G  +E   L+      
Sbjct: 126 TLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 185

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   ++ N+V YN+++   GK  +   A
Sbjct: 186 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKA 245

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R +   +D IL+ T++  
Sbjct: 246 NNLIQEMQSRGVEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVA 305

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K     +PDN      ++I    G ++ A  +F +  + G   
Sbjct: 306 YERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVK 360

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           ++     +I  L K ++  +++ VF      G  PD  +   +L+     +  +    V 
Sbjct: 361 DITVFERMIHLLSKYKKYSNVIEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVY 420

Query: 527 TCLQQAN 533
             +Q+  
Sbjct: 421 MEMQEVG 427



 Score = 86.3 bits (212), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 83/343 (24%), Positives = 156/343 (45%), Gaps = 40/343 (11%)

Query: 156 NALL-ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMV 214
           NA++ +    K ++++    + +K+  + P  T  Y+  +      ++F     + +EM 
Sbjct: 90  NAMINVFGKAKLFREARSLISEMKTAGVMP-NTTSYSTLLTMYVENKKFLEALSVFSEMR 148

Query: 215 SNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVE 274
             +  LD  T + +I    +  +  EA + F  M K G+ P+ V+Y+ +L VY  +    
Sbjct: 149 EIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFG 208

Query: 275 EVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLL 334
           E + L+        + + + ++ +  ++G++ +++    ++QEM+S GV+PN + Y+T++
Sbjct: 209 EAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGVEPNSITYSTII 268

Query: 335 EAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWP 394
              GK GK   A  LF ++  SG+  D+     +I  Y +A     A  L   + E K P
Sbjct: 269 SIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRL---LHELKRP 325

Query: 395 MDFILYNTLLNMCADIGLVEEAERLF---------EDMK--------LSDYCK------- 430
            D I  +T +++ A  G +EEA  +F         +D+         LS Y K       
Sbjct: 326 -DNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYSNVIEV 384

Query: 431 ----------PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
                     PD+     +LN YG     D A +++ EM E+G
Sbjct: 385 FDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEMQEVG 427



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 97/220 (44%), Gaps = 1/220 (0%)

Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYG 373
           +  EM+   + P+   Y+TL+   GK G    A S   +M +  +  D    + LI++  
Sbjct: 3   LFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELSR 62

Query: 374 KARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDN 433
           K      A+ ++ R++ + +  D + YN ++N+     L  EA  L  +MK +    P+ 
Sbjct: 63  KLCDYSKAISIFSRLKXSGFXPDLVAYNAMINVFGKAKLFREARSLISEMKTAG-VMPNT 121

Query: 434 YSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGV 493
            SY+ +L +Y        A+ +F EM E+   +++  C  +I   G+     +  ++F  
Sbjct: 122 TSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWG 181

Query: 494 SIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN 533
               G++P+      LL V    E   +   +   +Q+ N
Sbjct: 182 MRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKN 221


>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
 gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
          Length = 1116

 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 95/331 (28%), Positives = 160/331 (48%), Gaps = 35/331 (10%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D +T+ST+I    +C   DEA   F+ M   G +P+ +TY+A+++   K+ K+E   ++ 
Sbjct: 359 DTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMI 418

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
           E  V  G  PD I +SVL   F ++   D    +L  M S G  PN+V +N++++ + K+
Sbjct: 419 ESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKS 478

Query: 341 GKPGLARSLFDEM-VESGLTPDEKTLTALIKIY---GKARWAKD---------------- 380
            + G A  +FD+M ++ GL PD+ T   LI      G+A  A+                 
Sbjct: 479 DRSGEAFQMFDDMALKHGLVPDKITYCTLIDGLFRTGRAGQAEALLDAMPDPDTYAFNCC 538

Query: 381 ------------ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428
                       AL+++ RM E +   D + +N L+      G  E+A  LFE+M ++  
Sbjct: 539 INGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEM-VAKN 597

Query: 429 CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLV 488
            +PD  ++ A+++     G V+ A ++ + M  LGV  NV+    L+  L K+ RI++  
Sbjct: 598 LQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEAC 657

Query: 489 RVFGVSIDRGVKPDDRLCGCLLSVVSLCETS 519
           +     +  G  PD    G L  V +LC  S
Sbjct: 658 QFLEEMVSSGCVPDSITYGSL--VYALCRAS 686



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 89/319 (27%), Positives = 152/319 (47%), Gaps = 7/319 (2%)

Query: 190 YNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERM 248
           YN+ ++SL R G   + +E    EM  + +    +TY+TII    + N     +E FE +
Sbjct: 183 YNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEEL 242

Query: 249 YKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY 308
            + G  PD VTY+ ++D   K+G +EE   L+    +    P+ + +SVL     + G  
Sbjct: 243 VERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVVTYSVLINGLCKVGRI 302

Query: 309 DGIRYVLQEM--KSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL--TPDEKT 364
           D  R ++QEM  KS  V PN++ YN+ L+ + K      A  L   + +  L  +PD  T
Sbjct: 303 DEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVT 362

Query: 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
            + LI    K     +A  +++ M    +  + I YN L+N       +E A  + E M 
Sbjct: 363 FSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESM- 421

Query: 425 LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484
           +     PD  +Y+ +++ +     VD A+EL   M+  G   NV+    +I  L K+ R 
Sbjct: 422 VDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRS 481

Query: 485 DDLVRVF-GVSIDRGVKPD 502
            +  ++F  +++  G+ PD
Sbjct: 482 GEAFQMFDDMALKHGLVPD 500



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 95/351 (27%), Positives = 159/351 (45%), Gaps = 41/351 (11%)

Query: 173 FFNWIKSQNLFPMETIFYNVT---MKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTII 229
             + + S+   P    F ++     KS R G  FQ+ + +A   + + +  D ITY T+I
Sbjct: 452 LLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQMFDDMA---LKHGLVPDKITYCTLI 508

Query: 230 -----------------------TCAKRCNL--------FDEAIEWFERMYKTGLMPDEV 258
                                  T A  C +           A++ + RM +  L+PD+V
Sbjct: 509 DGLFRTGRAGQAEALLDAMPDPDTYAFNCCINGLSKLGDVSRALQVYNRMLELELVPDKV 568

Query: 259 TYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEM 318
           T++ ++    K+G  E+  +L+E  VA   +PD + F  L     ++G  +  R +L  M
Sbjct: 569 TFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLM 628

Query: 319 KSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWA 378
            +LGV PN+V YN L+  + K+G+   A    +EMV SG  PD  T  +L+    +A   
Sbjct: 629 GNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRT 688

Query: 379 KDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTA 438
            DAL+L   ++   W  D + YN L++     G  E+A  + E+M    +  PD  +Y  
Sbjct: 689 DDALQLVSELKSFGWDPDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGH-HPDVVTYNT 747

Query: 439 MLNIYGSGGNVDNAIELFEEMS---ELGVAINVMGCTCLIQCLGKARRIDD 486
           +++     G+++ A  L  +MS         NV+  + LI  L K  RID+
Sbjct: 748 LIDSLCKAGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLINGLCKVGRIDE 798



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/266 (30%), Positives = 133/266 (50%), Gaps = 9/266 (3%)

Query: 221  DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
            D +T+ST+I    +C   DEA   F+ M   G +P+ VTY+ +++   K+ K+E   ++ 
Sbjct: 853  DTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMI 912

Query: 281  ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
            E  V  G  PD I +SVL   F ++   D    +L  M S G  PN+V +N++++ + K+
Sbjct: 913  ESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSIIDGLCKS 972

Query: 341  GKPGLARSLFDEM-VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
             + G A  +FD+M ++ GL PD+ T   LI    +  WA  A  L + M +     D   
Sbjct: 973  DQSGEAFQMFDDMTLKHGLAPDKITYCTLIDGLFRTGWAGQAEVLLDAMPDP----DTYA 1028

Query: 400  YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
            +N  +N  + +G V  A     +++L     PD  ++  ++      GN + A  LFEEM
Sbjct: 1029 FNCCINGLSKLGDVSRALHRMLELELV----PDKVTFNILIAGACKAGNFEQASALFEEM 1084

Query: 460  SELGVAINVMGCTCLIQCLGKARRID 485
                +  +VM    LI  L KA +++
Sbjct: 1085 VAKNLQPDVMTFGALIDGLCKAGQVE 1110



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 96/399 (24%), Positives = 182/399 (45%), Gaps = 17/399 (4%)

Query: 114 TYSYNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTREN-ALLILNSLK---FWQK 169
           TY++N  +  L     KL D     + + R + E+   P +    +LI  + K   F Q 
Sbjct: 532 TYAFNCCINGLS----KLGDVSRALQVYNRML-ELELVPDKVTFNILIAGACKAGNFEQA 586

Query: 170 SYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTII 229
           S  F   + ++NL P + + +   +  L    Q +    + + M +  +  + +TY+ ++
Sbjct: 587 SALFEEMV-AKNLQP-DVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALV 644

Query: 230 TCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWK 289
               +    +EA ++ E M  +G +PD +TY +++    ++ + ++ L L     + GW 
Sbjct: 645 HGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWD 704

Query: 290 PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSL 349
           PD + +++L     +SG  +    VL+EM   G  P++V YNTL++++ KAG    AR L
Sbjct: 705 PDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRL 764

Query: 350 FDEM---VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPM--DFILYNTLL 404
             +M   V     P+  T + LI    K     +A EL + M      +  + I YN+ L
Sbjct: 765 HGDMSSRVSRCCVPNVVTYSVLINGLCKVGRIDEARELIQEMMRKSCDVLPNIITYNSFL 824

Query: 405 NMCADIGLVEEAERLFEDMKLSDY-CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           +      ++ EA  L   ++       PD  +++ +++     G  D A  +F++M   G
Sbjct: 825 DGLCKQSMMAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGG 884

Query: 464 VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
              NV+    L+  L K  +++    +    +D+GV PD
Sbjct: 885 YVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDKGVTPD 923



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 132/276 (47%), Gaps = 2/276 (0%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           +T  +N  +  L          Q+ N M+  E+  D +T++ +I  A +   F++A   F
Sbjct: 531 DTYAFNCCINGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASALF 590

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           E M    L PD +T+ A++D   K+G+VE    + +     G  P+ + ++ L     +S
Sbjct: 591 EEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKS 650

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G  +     L+EM S G  P+ + Y +L+ A+ +A +   A  L  E+   G  PD  T 
Sbjct: 651 GRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTY 710

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM-- 423
             L+    K+   + A+ + E M       D + YNTL++     G +EEA RL  DM  
Sbjct: 711 NILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSS 770

Query: 424 KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           ++S  C P+  +Y+ ++N     G +D A EL +EM
Sbjct: 771 RVSRCCVPNVVTYSVLINGLCKVGRIDEARELIQEM 806



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 88/361 (24%), Positives = 161/361 (44%), Gaps = 42/361 (11%)

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           P   + YN  +  L    + +   Q   EMVS+    D+ITY +++    R +  D+A++
Sbjct: 634 PPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQ 693

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
               +   G  PD VTY+ ++D   KSG+ E+ +++ E  V  G  PD + ++ L     
Sbjct: 694 LVSELKSFGWDPDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLC 753

Query: 304 ESGDYDGIRYVLQEMKSLGVQ---PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG--L 358
           ++GD +  R +  +M S   +   PN+V Y+ L+  + K G+   AR L  EM+     +
Sbjct: 754 KAGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLINGLCKVGRIDEARELIQEMMRKSCDV 813

Query: 359 TPDEKTLTALIKIYGKARWAKDALELWERMRENKWPM--DFILYNTLLNMCADIGLVEEA 416
            P+  T  + +    K     +A EL   +R+    +  D + ++TL++     G  +EA
Sbjct: 814 LPNIITYNSFLDGLCKQSMMAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEA 873

Query: 417 ERLFEDMKLSDY--------------CK--------------------PDNYSYTAMLNI 442
             +F+DM    Y              CK                    PD  +Y+ +++ 
Sbjct: 874 CNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDA 933

Query: 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF-GVSIDRGVKP 501
           +    +VD A+EL   M+  G   NV+    +I  L K+ +  +  ++F  +++  G+ P
Sbjct: 934 FCKASHVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDQSGEAFQMFDDMTLKHGLAP 993

Query: 502 D 502
           D
Sbjct: 994 D 994



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 73/303 (24%), Positives = 124/303 (40%), Gaps = 42/303 (13%)

Query: 240 EAIEWFERMYKTGLMPDEVTYSAIL-DVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
           +AI+ F         P+  TYS +L   Y   G VE  L  + R  +S        ++++
Sbjct: 129 KAIDLFRSRLPPRCRPNHFTYSTLLRATYKAGGDVERTLGFFRRIRSSSRSV--ADYNIV 186

Query: 299 GKMFGESGDYD-GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
            +    +G+    +     EM   GV P +V YNT++  + K+ + G    LF+E+VE G
Sbjct: 187 LQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELVERG 246

Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417
             PD  T   LI    KA   ++A  L   M       + + Y+ L+N    +G ++EA 
Sbjct: 247 HHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVVTYSVLINGLCKVGRIDEAR 306

Query: 418 RLFEDMK----------------LSDYCK----------------------PDNYSYTAM 439
            L ++M                 L   CK                      PD  +++ +
Sbjct: 307 ELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTL 366

Query: 440 LNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGV 499
           ++     G +D A  +F++M   G   NV+    L+  L KA +++    +    +D+GV
Sbjct: 367 IDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGV 426

Query: 500 KPD 502
            PD
Sbjct: 427 TPD 429



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 91/221 (41%), Gaps = 35/221 (15%)

Query: 187  TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
             + YNV M  L    + +    +   MV   +  D ITYS ++    + +  DEA+E   
Sbjct: 889  VVTYNVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLH 948

Query: 247  RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYE-----RGVA---------------S 286
             M   G  P+ VT+++I+D   KS +  E   +++      G+A               +
Sbjct: 949  GMASRGCTPNVVTFNSIIDGLCKSDQSGEAFQMFDDMTLKHGLAPDKITYCTLIDGLFRT 1008

Query: 287  GWK------------PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLL 334
            GW             PD  AF+       + GD   +   L  M  L + P+ V +N L+
Sbjct: 1009 GWAGQAEVLLDAMPDPDTYAFNCCINGLSKLGD---VSRALHRMLELELVPDKVTFNILI 1065

Query: 335  EAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA 375
                KAG    A +LF+EMV   L PD  T  ALI    KA
Sbjct: 1066 AGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKA 1106



 Score = 44.7 bits (104), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 39/69 (56%)

Query: 206  IEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
            + +  + M+  E+  D +T++ +I  A +   F++A   FE M    L PD +T+ A++D
Sbjct: 1042 VSRALHRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALID 1101

Query: 266  VYAKSGKVE 274
               K+G+VE
Sbjct: 1102 GLCKAGQVE 1110


>gi|449447783|ref|XP_004141647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g73710-like [Cucumis sativus]
          Length = 1020

 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 149/295 (50%), Gaps = 2/295 (0%)

Query: 219 ELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS 278
           ++D + Y+ +I    +  L+++A   F+ M   G  PDE TY++++ +++    V+E   
Sbjct: 528 KMDVMEYNVMIKAYGKAELYEKAFLLFKSMKNRGTWPDECTYNSLIQMFSGGDLVDEARR 587

Query: 279 LYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMG 338
           L       G+KP    FS +   +   G       V   M    V+PN ++Y  L+    
Sbjct: 588 LLTEMQRMGFKPTCQTFSAVIASYARLGLMSDAVEVYDMMVHADVEPNEILYGVLVNGFA 647

Query: 339 KAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFI 398
           + G+   A   F  M +SG+  ++  LT+LIK + K    +DA  ++ RM+  +   D I
Sbjct: 648 EIGQAEEALKYFRLMEKSGIAENQIVLTSLIKAFSKVGSLEDARRIYNRMKNMEDGADTI 707

Query: 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458
             N+++N+ AD+G+V EA+++FED++   Y   D  S+  M+ +Y + G +D AIE+ EE
Sbjct: 708 ASNSMINLYADLGMVSEAKQVFEDLRERGYA--DGVSFATMIYLYKNIGMLDEAIEVAEE 765

Query: 459 MSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVV 513
           M E G+  +      +I+C     ++ +   +    + R + PD+R    L +++
Sbjct: 766 MKESGLLRDATSFRKVIECYAINGQVRECGELLHEMVTRKLLPDNRTFNVLFTIL 820



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 102/467 (21%), Positives = 186/467 (39%), Gaps = 91/467 (19%)

Query: 159 LILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEI 218
           +IL     W++    F W KSQ  +    I YN+ +++L   +++  +    NEM  N +
Sbjct: 133 VILKEQSRWERVIQVFQWFKSQKDYVPNVIHYNIVLRTLGQAQKWDELRLCWNEMAENGV 192

Query: 219 ELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS 278
              N TY  +I    +  L  EA+ W + M   G+ PDEVT + ++ V   +G+ +    
Sbjct: 193 VPTNNTYGMLIDVYGKVGLVKEALLWIKHMTVRGIFPDEVTMNTVVRVLKDAGEFDSADK 252

Query: 279 LYER--------------------GVASGWKP-DPIAF---------------------- 295
            Y+                     GV S  +P  P  F                      
Sbjct: 253 FYKDWCRGLVELNDFDLNSRVEDFGVNSAVEPITPKHFLLTELFRIGTRIPNRKVSPEVD 312

Query: 296 ------------SVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
                       + L  ++G++G       V  EM + G+  + + +NT++   G  G  
Sbjct: 313 NCVRKPRLTSTYNTLIDLYGKAGRLKDAANVFGEMLTTGISMDTITFNTMIYTCGSHGHL 372

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
             A +L  +M E GL+PD KT    + +Y        AL+ + R+RE     D + +  L
Sbjct: 373 AEAETLLLKMEERGLSPDTKTYNIFLSLYANNGNIDGALKCYRRIREVGLFPDVVTHRAL 432

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM---S 460
           L++ ++  +VE+ E +  +M+ S +   D +S   ++ +Y + G +D A  L E+    +
Sbjct: 433 LHVLSERNMVEDVENVIAEMEKS-HILLDEHSLPRVIKMYINEGLLDRAKILLEKYRLDT 491

Query: 461 EL--------------------------------GVAINVMGCTCLIQCLGKARRIDDLV 488
           EL                                G  ++VM    +I+  GKA   +   
Sbjct: 492 ELSPRISAAIIDAYAEKGLWFEAESIFLWKRDLSGKKMDVMEYNVMIKAYGKAELYEKAF 551

Query: 489 RVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPK 535
            +F    +RG  PD+     L+ + S  +  ++  +++T +Q+   K
Sbjct: 552 LLFKSMKNRGTWPDECTYNSLIQMFSGGDLVDEARRLLTEMQRMGFK 598



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 85/385 (22%), Positives = 161/385 (41%), Gaps = 48/385 (12%)

Query: 192 VTMKSLRFGRQFQLIEQLANEMVSNEIELDNI--------TYSTIITCAKRCNLFDEAIE 243
           +T K       F++  ++ N  VS E+  DN         TY+T+I    +     +A  
Sbjct: 285 ITPKHFLLTELFRIGTRIPNRKVSPEV--DNCVRKPRLTSTYNTLIDLYGKAGRLKDAAN 342

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
            F  M  TG+  D +T++ ++      G + E  +L  +    G  PD   +++   ++ 
Sbjct: 343 VFGEMLTTGISMDTITFNTMIYTCGSHGHLAEAETLLLKMEERGLSPDTKTYNIFLSLYA 402

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
            +G+ DG     + ++ +G+ P++V +  LL  + +        ++  EM +S +  DE 
Sbjct: 403 NNGNIDGALKCYRRIREVGLFPDVVTHRALLHVLSERNMVEDVENVIAEMEKSHILLDEH 462

Query: 364 TLTALIKIY---GKARWAKDALE---------------------------------LWER 387
           +L  +IK+Y   G    AK  LE                                 LW+R
Sbjct: 463 SLPRVIKMYINEGLLDRAKILLEKYRLDTELSPRISAAIIDAYAEKGLWFEAESIFLWKR 522

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
               K  MD + YN ++       L E+A  LF+ MK +    PD  +Y +++ ++  G 
Sbjct: 523 DLSGK-KMDVMEYNVMIKAYGKAELYEKAFLLFKSMK-NRGTWPDECTYNSLIQMFSGGD 580

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCG 507
            VD A  L  EM  +G        + +I    +   + D V V+ + +   V+P++ L G
Sbjct: 581 LVDEARRLLTEMQRMGFKPTCQTFSAVIASYARLGLMSDAVEVYDMMVHADVEPNEILYG 640

Query: 508 CLLSVVSLCETSEDVGKVITCLQQA 532
            L++  +    +E+  K    ++++
Sbjct: 641 VLVNGFAEIGQAEEALKYFRLMEKS 665



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 91/392 (23%), Positives = 169/392 (43%), Gaps = 51/392 (13%)

Query: 212 EMVSNEIELDNITYSTII-TCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
           EM++  I +D IT++T+I TC    +L  EA     +M + GL PD  TY+  L +YA +
Sbjct: 346 EMLTTGISMDTITFNTMIYTCGSHGHL-AEAETLLLKMEERGLSPDTKTYNIFLSLYANN 404

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMK---------SL 321
           G ++  L  Y R    G  PD +    L  +  E    + +  V+ EM+         SL
Sbjct: 405 GNIDGALKCYRRIREVGLFPDVVTHRALLHVLSERNMVEDVENVIAEMEKSHILLDEHSL 464

Query: 322 GVQPNLVVYNTLLEA---------MGKAGKPGLARSLFDEMVESGLTPDEKTL------- 365
                + +   LL+          +     P ++ ++ D   E GL  + +++       
Sbjct: 465 PRVIKMYINEGLLDRAKILLEKYRLDTELSPRISAAIIDAYAEKGLWFEAESIFLWKRDL 524

Query: 366 ----------TALIKIYGKARWAKDALELWERMR-ENKWPMDFILYNTLLNMCADIGLVE 414
                       +IK YGKA   + A  L++ M+    WP D   YN+L+ M +   LV+
Sbjct: 525 SGKKMDVMEYNVMIKAYGKAELYEKAFLLFKSMKNRGTWP-DECTYNSLIQMFSGGDLVD 583

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
           EA RL  +M+   + KP   +++A++  Y   G + +A+E+++ M    V  N +    L
Sbjct: 584 EARRLLTEMQRMGF-KPTCQTFSAVIASYARLGLMSDAVEVYDMMVHADVEPNEILYGVL 642

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI-------- 526
           +    +  + ++ ++ F +    G+  +  +   L+   S   + ED  ++         
Sbjct: 643 VNGFAEIGQAEEALKYFRLMEKSGIAENQIVLTSLIKAFSKVGSLEDARRIYNRMKNMED 702

Query: 527 ---TCLQQANPKLVAFLNLIEDNSTGFENIKE 555
              T    +   L A L ++ +    FE+++E
Sbjct: 703 GADTIASNSMINLYADLGMVSEAKQVFEDLRE 734



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 80/381 (20%), Positives = 154/381 (40%), Gaps = 40/381 (10%)

Query: 165 KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNIT 224
           + ++K++  F  +K++  +P E   YN  ++    G       +L  EM     +    T
Sbjct: 545 ELYEKAFLLFKSMKNRGTWPDECT-YNSLIQMFSGGDLVDEARRLLTEMQRMGFKPTCQT 603

Query: 225 YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
           +S +I    R  L  +A+E ++ M    + P+E+ Y  +++ +A+ G+ EE L  +    
Sbjct: 604 FSAVIASYARLGLMSDAVEVYDMMVHADVEPNEILYGVLVNGFAEIGQAEEALKYFRLME 663

Query: 285 ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344
            SG   + I  + L K F + G  +  R +   MK++    + +  N+++      G   
Sbjct: 664 KSGIAENQIVLTSLIKAFSKVGSLEDARRIYNRMKNMEDGADTIASNSMINLYADLGMVS 723

Query: 345 LARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
            A+ +F+++ E G   D  +   +I +Y       +A+E+ E M+E+    D   +  ++
Sbjct: 724 EAKQVFEDLRERGYA-DGVSFATMIYLYKNIGMLDEAIEVAEEMKESGLLRDATSFRKVI 782

Query: 405 NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG------------------ 446
              A  G V E   L  +M ++    PDN ++  +  I   G                  
Sbjct: 783 ECYAINGQVRECGELLHEM-VTRKLLPDNRTFNVLFTILKKGVIPLEAVSQLESAFHEEK 841

Query: 447 ---------------GNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
                          G   +A+E  +   +  V ++       I   G A +ID  + +F
Sbjct: 842 TYARQAIIAAVFSGLGLHASALESCDTFLKAEVQLDSFAYNVAIYAYGAAEKIDKALNIF 901

Query: 492 GVSIDRGVKPD----DRLCGC 508
               D+ +KPD      L GC
Sbjct: 902 MKMKDQNLKPDLVTYINLVGC 922



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 100/239 (41%), Gaps = 33/239 (13%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D ++++T+I   K   + DEAIE  E M ++GL+ D  ++  +++ YA +G+V E   L 
Sbjct: 739 DGVSFATMIYLYKNIGMLDEAIEVAEEMKESGLLRDATSFRKVIECYAINGQVRECGELL 798

Query: 281 ERGVASGWKPDPIAFSVLGKM-----------------FGESGDYDGIRYVLQEMKSLG- 322
              V     PD   F+VL  +                 F E   Y     +      LG 
Sbjct: 799 HEMVTRKLLPDNRTFNVLFTILKKGVIPLEAVSQLESAFHEEKTYARQAIIAAVFSGLGL 858

Query: 323 ---------------VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
                          VQ +   YN  + A G A K   A ++F +M +  L PD  T   
Sbjct: 859 HASALESCDTFLKAEVQLDSFAYNVAIYAYGAAEKIDKALNIFMKMKDQNLKPDLVTYIN 918

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
           L+  YGKA   +   +++ +++  +  ++  L+  ++N        +  + + ++MK S
Sbjct: 919 LVGCYGKAGMIEGVKQIYSQLKYGEIELNKSLFFAIINTFRSAHRYDLVQMVKQEMKFS 977



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 72/369 (19%), Positives = 136/369 (36%), Gaps = 69/369 (18%)

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           P    F  V     R G     +E + + MV  ++E + I Y  ++         +EA++
Sbjct: 599 PTCQTFSAVIASYARLGLMSDAVE-VYDMMVHADVEPNEILYGVLVNGFAEIGQAEEALK 657

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER--------------------- 282
           +F  M K+G+  +++  ++++  ++K G +E+   +Y R                     
Sbjct: 658 YFRLMEKSGIAENQIVLTSLIKAFSKVGSLEDARRIYNRMKNMEDGADTIASNSMINLYA 717

Query: 283 --GVASGWK-----------PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVV 329
             G+ S  K            D ++F+ +  ++   G  D    V +EMK  G+  +   
Sbjct: 718 DLGMVSEAKQVFEDLRERGYADGVSFATMIYLYKNIGMLDEAIEVAEEMKESGLLRDATS 777

Query: 330 YNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK--------------- 374
           +  ++E     G+      L  EMV   L PD +T   L  I  K               
Sbjct: 778 FRKVIECYAINGQVRECGELLHEMVTRKLLPDNRTFNVLFTILKKGVIPLEAVSQLESAF 837

Query: 375 ------ARWA------------KDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEA 416
                 AR A              ALE  +   + +  +D   YN  +        +++A
Sbjct: 838 HEEKTYARQAIIAAVFSGLGLHASALESCDTFLKAEVQLDSFAYNVAIYAYGAAEKIDKA 897

Query: 417 ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
             +F  MK  +  KPD  +Y  ++  YG  G ++   +++ ++    + +N      +I 
Sbjct: 898 LNIFMKMKDQN-LKPDLVTYINLVGCYGKAGMIEGVKQIYSQLKYGEIELNKSLFFAIIN 956

Query: 477 CLGKARRID 485
               A R D
Sbjct: 957 TFRSAHRYD 965



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 49/103 (47%)

Query: 217 EIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV 276
           E++LD+  Y+  I         D+A+  F +M    L PD VTY  ++  Y K+G +E V
Sbjct: 873 EVQLDSFAYNVAIYAYGAAEKIDKALNIFMKMKDQNLKPDLVTYINLVGCYGKAGMIEGV 932

Query: 277 LSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMK 319
             +Y +      + +   F  +   F  +  YD ++ V QEMK
Sbjct: 933 KQIYSQLKYGEIELNKSLFFAIINTFRSAHRYDLVQMVKQEMK 975


>gi|15221411|ref|NP_177623.1| plastid transcriptionally active 2 [Arabidopsis thaliana]
 gi|75194055|sp|Q9S7Q2.1|PP124_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g74850, chloroplastic; AltName: Full=Protein PLASTID
           TRANSCRIPTIONALLY ACTIVE 2; Flags: Precursor
 gi|5882738|gb|AAD55291.1|AC008263_22 Contains 3 PF|01535 DUF17 domains [Arabidopsis thaliana]
 gi|12323908|gb|AAG51934.1|AC013258_28 hypothetical protein; 81052-84129 [Arabidopsis thaliana]
 gi|332197518|gb|AEE35639.1| plastid transcriptionally active 2 [Arabidopsis thaliana]
          Length = 862

 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 152/323 (47%), Gaps = 4/323 (1%)

Query: 225 YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
           Y+ +I+   R  L D+ +E F+ M   G+     +Y+A+++ Y ++G+ E  L L +R  
Sbjct: 144 YTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMK 203

Query: 285 ASGWKPDPIAFSVLGKMFGESG-DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
                P  + ++ +       G D++G+  +  EM+  G+QP++V YNTLL A    G  
Sbjct: 204 NEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLG 263

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
             A  +F  M + G+ PD  T + L++ +GK R  +   +L   M       D   YN L
Sbjct: 264 DEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVL 323

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           L   A  G ++EA  +F  M+ +  C P+  +Y+ +LN++G  G  D+  +LF EM    
Sbjct: 324 LEAYAKSGSIKEAMGVFHQMQAAG-CTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSN 382

Query: 464 VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVG 523
              +      LI+  G+     ++V +F   ++  ++PD      ++         ED  
Sbjct: 383 TDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDAR 442

Query: 524 KVITCLQQAN--PKLVAFLNLIE 544
           K++  +   +  P   A+  +IE
Sbjct: 443 KILQYMTANDIVPSSKAYTGVIE 465



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/339 (26%), Positives = 162/339 (47%), Gaps = 4/339 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           ++ S    + +K++ + P    +  V     R G  ++ +  L  EM    I+ D +TY+
Sbjct: 192 YETSLELLDRMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYN 251

Query: 227 TIIT-CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVA 285
           T+++ CA R  L DEA   F  M   G++PD  TYS +++ + K  ++E+V  L     +
Sbjct: 252 TLLSACAIR-GLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMAS 310

Query: 286 SGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGL 345
            G  PD  +++VL + + +SG       V  +M++ G  PN   Y+ LL   G++G+   
Sbjct: 311 GGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDD 370

Query: 346 ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405
            R LF EM  S   PD  T   LI+++G+  + K+ + L+  M E     D   Y  ++ 
Sbjct: 371 VRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIF 430

Query: 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
            C   GL E+A ++ + M  +D   P + +YT ++  +G     + A+  F  M E+G  
Sbjct: 431 ACGKGGLHEDARKILQYMTANDIV-PSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSN 489

Query: 466 INVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR 504
            ++     L+    +   + +   +    +D G+ P +R
Sbjct: 490 PSIETFHSLLYSFARGGLVKESEAILSRLVDSGI-PRNR 527



 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 117/460 (25%), Positives = 207/460 (45%), Gaps = 38/460 (8%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           TYS ++    +   +D+  + F  M  +   PD  TY+ +++V+ + G  +EV++L+   
Sbjct: 354 TYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDM 413

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
           V    +PD   +  +    G+ G ++  R +LQ M +  + P+   Y  ++EA G+A   
Sbjct: 414 VEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALY 473

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
             A   F+ M E G  P  +T  +L+  + +    K++  +  R+ ++  P +   +N  
Sbjct: 474 EEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQ 533

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           +      G  EEA + + DM+ S  C PD  +  A+L++Y     VD   E FEEM    
Sbjct: 534 IEAYKQGGKFEEAVKTYVDMEKSR-CDPDERTLEAVLSVYSFARLVDECREQFEEMKASD 592

Query: 464 VAINVMGCTCLIQCL-GKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDV 522
           +  ++M C C++  + GK  R DD+  +    +   V    ++ G ++      +  +D 
Sbjct: 593 ILPSIM-CYCMMLAVYGKTERWDDVNELLEEMLSNRVSNIHQVIGQMIK----GDYDDD- 646

Query: 523 GKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRN 582
                    +N ++V ++ L + NS G                +  R  F N L+D    
Sbjct: 647 ---------SNWQIVEYV-LDKLNSEG--------------CGLGIR--FYNALLDALWW 680

Query: 583 RNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAKIVLR 642
               ERA  +L   T  GL+P L  K    WS+DV  +S G   TAL  W+  +  ++L+
Sbjct: 681 LGQKERAARVLNEATKRGLFPELFRKNKLVWSVDVHRMSEGGMYTALSVWLNDINDMLLK 740

Query: 643 EEVLPQLFLAETGTGTHKFSQGLATAFASHVNKLAAPFRQ 682
            + LPQL +  +  G  + S   + A  S + K A  F Q
Sbjct: 741 GD-LPQLAVVVSVRGQLEKS---SAARESPIAKAAFSFLQ 776



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 124/270 (45%), Gaps = 1/270 (0%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           Y+V +       ++  + QL  EM S+  + D  TY+ +I        F E +  F  M 
Sbjct: 355 YSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMV 414

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
           +  + PD  TY  I+    K G  E+   + +   A+   P   A++ + + FG++  Y+
Sbjct: 415 EENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYE 474

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
                   M  +G  P++  +++LL +  + G    + ++   +V+SG+  +  T  A I
Sbjct: 475 EALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQI 534

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
           + Y +    ++A++ +  M +++   D      +L++ +   LV+E    FE+MK SD  
Sbjct: 535 EAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYSFARLVDECREQFEEMKASDIL 594

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
            P    Y  ML +YG     D+  EL EEM
Sbjct: 595 -PSIMCYCMMLAVYGKTERWDDVNELLEEM 623



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 135/291 (46%), Gaps = 8/291 (2%)

Query: 295 FSVLGKMFGESGDYD-GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
           F+++ K F   GD+   +R      + +  +PN  +Y  ++  +G+ G       +FDEM
Sbjct: 108 FALVFKEFAGRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEM 167

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
              G++    + TALI  YG+    + +LEL +RM+  K     + YNT++N CA  GL 
Sbjct: 168 PSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNEKISPSILTYNTVINACARGGLD 227

Query: 414 EEA-ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
            E    LF +M+  +  +PD  +Y  +L+     G  D A  +F  M++ G+  ++   +
Sbjct: 228 WEGLLGLFAEMR-HEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYS 286

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQA 532
            L++  GK RR++ +  + G     G  PD      LL   +   + ++   V   +Q A
Sbjct: 287 HLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAA 346

Query: 533 ----NPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDI 579
               N    + L  +   S  ++++++ F   +K +  D      N LI++
Sbjct: 347 GCTPNANTYSVLLNLFGQSGRYDDVRQLFLE-MKSSNTDPDAATYNILIEV 396



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/255 (22%), Positives = 93/255 (36%), Gaps = 36/255 (14%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F  +KS N  P +   YN+ ++    G  F+ +  L ++MV   IE D  TY  II   
Sbjct: 374 LFLEMKSSNTDP-DAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFAC 432

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +  L ++A +  + M    ++P    Y+ +++ + ++   EE L  +      G  P  
Sbjct: 433 GKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSI 492

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA------ 346
             F  L   F   G       +L  +   G+  N   +N  +EA  + GK   A      
Sbjct: 493 ETFHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTYVD 552

Query: 347 -----------------------------RSLFDEMVESGLTPDEKTLTALIKIYGKARW 377
                                        R  F+EM  S + P       ++ +YGK   
Sbjct: 553 MEKSRCDPDERTLEAVLSVYSFARLVDECREQFEEMKASDILPSIMCYCMMLAVYGKTER 612

Query: 378 AKDALELWERMRENK 392
             D  EL E M  N+
Sbjct: 613 WDDVNELLEEMLSNR 627



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 86/178 (48%), Gaps = 11/178 (6%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           +N  +++ + G +F+   +   +M  +  + D  T   +++      L DE  E FE M 
Sbjct: 530 FNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYSFARLVDECREQFEEMK 589

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
            + ++P  + Y  +L VY K+ + ++V  L E  +++  +   I   V+G+M    GDYD
Sbjct: 590 ASDILPSIMCYCMMLAVYGKTERWDDVNELLEEMLSN--RVSNI-HQVIGQMI--KGDYD 644

Query: 310 G------IRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD 361
                  + YVL ++ S G    +  YN LL+A+   G+   A  + +E  + GL P+
Sbjct: 645 DDSNWQIVEYVLDKLNSEGCGLGIRFYNALLDALWWLGQKERAARVLNEATKRGLFPE 702


>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
          Length = 552

 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 157/304 (51%), Gaps = 1/304 (0%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           + +N  +  L    + +   ++ +EMV   +  D ++Y+T+++   +     E++  F  
Sbjct: 82  VTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSE 141

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M + GL+PD VT+++++    K+G +E+ ++L  +    G + + + F+ L   F + G 
Sbjct: 142 MTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGF 201

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
            D     ++EM+  G+QP++V YN L+    K G+  LAR L  EM    + PD  T + 
Sbjct: 202 LDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYST 261

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           +I  Y K      A +L ++M +     D I Y++L+    +   + +A  LFE+M L  
Sbjct: 262 IISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENM-LQL 320

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
             +PD ++YT +++ +   GNV+ A+ L +EM   GV  +V+  + LI  L K+ R  + 
Sbjct: 321 GVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEA 380

Query: 488 VRVF 491
            R+ 
Sbjct: 381 HRLL 384



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 85/315 (26%), Positives = 161/315 (51%), Gaps = 2/315 (0%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN+ +++L    + +    +  +M       + +TY+T++    R    D A      M 
Sbjct: 13  YNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMR 72

Query: 250 KTG-LMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY 308
           + G   P+ VT++++++   K+G++E    +++  V  G  PD ++++ L   + + G  
Sbjct: 73  EEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCL 132

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
                V  EM   G+ P++V + +L+ A  KAG    A +L  +M E GL  +E T TAL
Sbjct: 133 HESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTAL 192

Query: 369 IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428
           I  + K  +  DAL   E MR+       + YN L+N    +G ++ A  L  +M+ +  
Sbjct: 193 IDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREME-AKR 251

Query: 429 CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLV 488
            KPD  +Y+ +++ Y   GN+D+A +L ++M + GV  + +  + LI+ L + +R++D  
Sbjct: 252 VKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDAC 311

Query: 489 RVFGVSIDRGVKPDD 503
            +F   +  GV+PD+
Sbjct: 312 ELFENMLQLGVQPDE 326



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 131/259 (50%), Gaps = 8/259 (3%)

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M + G+ P+  TY+ ++      G++EE + +      +G  P+ + ++ L   F  +G+
Sbjct: 1   MVRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGE 60

Query: 308 YDGIRYVLQEMKSLG-VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
            DG   V+  M+  G  +PNLV +N+++  + KAG+   AR +FDEMV  GL PD  +  
Sbjct: 61  LDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYN 120

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
            L+  Y K     ++L ++  M +     D + + +L++     G +E+A  L   M+  
Sbjct: 121 TLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRER 180

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID- 485
              + +  ++TA+++ +   G +D+A+   EEM + G+  +V+    LI    K  R+D 
Sbjct: 181 GL-RMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDL 239

Query: 486 --DLVRVFGVSIDRGVKPD 502
             +L+R       + VKPD
Sbjct: 240 ARELIREMEA---KRVKPD 255



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 134/287 (46%), Gaps = 21/287 (7%)

Query: 187 TIFYNVTMKS-LRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
            + YN  +    + GR   L  +L  EM +  ++ D +TYSTII+   +    D A +  
Sbjct: 221 VVCYNALINGYCKLGR-MDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLN 279

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           ++M K G++PD +TYS+++    +  ++ +   L+E  +  G +PD   ++ L     + 
Sbjct: 280 QKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKE 339

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE--- 362
           G+ +    +  EM   GV P++V Y+ L+  + K+ +   A  L  ++      PD    
Sbjct: 340 GNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKY 399

Query: 363 ------------KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
                       K++ AL+K +      K+A ++++ M +  W +D  +Y+ L++     
Sbjct: 400 DALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRG 459

Query: 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNV---DNAIE 454
           G V +A    + M  S +  P++ S  +++      G V   DNAI+
Sbjct: 460 GNVRKALSFHKQMLRSGF-SPNSTSTISLVRGLFEEGMVVEADNAIQ 505



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/201 (21%), Positives = 90/201 (44%), Gaps = 17/201 (8%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + I Y+  ++ L   ++     +L   M+   ++ D  TY+T+I    +    ++A+   
Sbjct: 290 DAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLH 349

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           + M + G++PD VTYS +++  +KS + +E   L  +       PD I +  L  +    
Sbjct: 350 DEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDAL-MLCCSK 408

Query: 306 GDYDGIRYVLQE--MKSLGVQPNLV--------------VYNTLLEAMGKAGKPGLARSL 349
            ++  +  +L+   MK L  + + V              VY+ L+    + G    A S 
Sbjct: 409 AEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSF 468

Query: 350 FDEMVESGLTPDEKTLTALIK 370
             +M+ SG +P+  +  +L++
Sbjct: 469 HKQMLRSGFSPNSTSTISLVR 489


>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 154/314 (49%), Gaps = 1/314 (0%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN+ ++        ++      EM  N    + +TY+TII    +     EA +    M 
Sbjct: 206 YNILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMA 265

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
             GL P+ ++Y+ +++   + G+++E   + E      + PD + F+ L   +   G++ 
Sbjct: 266 LKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFH 325

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               +  EM   G+ PN+V Y TL+ +M KAG    A    D+M + GL P+ +T T LI
Sbjct: 326 QALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLI 385

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
             + +  + K A ++ + M EN +    I YN L+N    +G +E+A  L ++M    + 
Sbjct: 386 DGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFI 445

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
            PD  SY+ +++ +     ++ A +L  EM   G++ +V   + LIQ L K RR+ ++  
Sbjct: 446 -PDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCD 504

Query: 490 VFGVSIDRGVKPDD 503
           +F   +  G+ PD+
Sbjct: 505 LFQEMLSLGLPPDE 518



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 143/307 (46%), Gaps = 7/307 (2%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNL--FDEAIEWF 245
           I YNV +  L    Q +   ++  EM       D +T++T+I     CN+  F +A+   
Sbjct: 274 ISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLIN--GYCNVGNFHQALVLH 331

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
             M K GL P+ VTY+ +++   K+G +   +   ++    G  P+   ++ L   F + 
Sbjct: 332 AEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQ 391

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G       +++EM   G  P ++ YN L+      G+   A  L  EM+E G  PD  + 
Sbjct: 392 GFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSY 451

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN-MCADIGLVEEAERLFEDMK 424
           + +I  + + +  + A +L   M       D   Y++L+  +C    L E  + LF++M 
Sbjct: 452 STIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCD-LFQEM- 509

Query: 425 LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484
           LS    PD  +YT+++N Y   G++D A+ L +EM + G + +++    LI    K  R 
Sbjct: 510 LSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRT 569

Query: 485 DDLVRVF 491
            +  R+ 
Sbjct: 570 KEAKRLL 576



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 122/286 (42%), Gaps = 21/286 (7%)

Query: 180 QNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFD 239
           +N F    I YN  +       + +    L  EM+      D ++YSTII+   R    +
Sbjct: 406 ENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELE 465

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           +A +    M   G+ PD  TYS+++    K  ++ EV  L++  ++ G  PD + ++ L 
Sbjct: 466 KAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLI 525

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
             +   GD D    +  EM   G  P++V YN L+    K  +   A+ L  +++     
Sbjct: 526 NAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESV 585

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
           P+E T   LI       + K AL L +                    C   GL+ EA+R+
Sbjct: 586 PNEITYNTLIDNCNNLEF-KSALALMK------------------GFCMK-GLMNEADRV 625

Query: 420 FEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
            E M    Y K +   Y  +++ +   GN++ A  L++EM   G A
Sbjct: 626 LESMLQKGY-KLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFA 670


>gi|299471526|emb|CBN80012.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 732

 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 104/390 (26%), Positives = 173/390 (44%), Gaps = 14/390 (3%)

Query: 123 DLKLFARKLNDCDNTEE--------AFLRAITEIPHQPTRENALLILNSLKFWQKSYFFF 174
           D + ++  +  C N  +        A + A    P   T  +A+     +  W+++    
Sbjct: 185 DSQNYSSAIAACGNARQWERAVELLASMAARGTPPDVLTYSSAIAACAKVSRWKEAVGLL 244

Query: 175 NWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTII-TCAK 233
             +K Q + P   I Y+  + + R G Q++    L  EM +  +  D ITYST+I  CAK
Sbjct: 245 RSMKGQGVKP-NVIVYSAAISACRKGGQWETAVDLLKEMPAVGLAPDVITYSTVIDACAK 303

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
           R   ++ A      M   G++ + +TYS ++   AK G+ EE ++L      +G  PD I
Sbjct: 304 R-GQWEPAFRLLMEMPTKGVVANIITYSIVIGACAKWGQWEEAVALLREMQENGVAPDVI 362

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
            +S       + G ++    +L+EM   GV PN + Y  ++ A  K G+   A  L  EM
Sbjct: 363 TYSSTISACAKKGQWEEAVGLLREMPMEGVTPNAISYGIVISACAKRGRWREAIDLLQEM 422

Query: 354 VESGLTPDEKTLTALIKIYGKA-RWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
              G+ PD    +A I    +A RW + AL L   M       + I YN+ ++ CA  G 
Sbjct: 423 QAHGVPPDVINYSAAIDACAQASRW-EQALWLLREMPATGLTPNVISYNSAIDACAKTGR 481

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
            + A  L  +M       PD  +Y+A++     G   + A++LF EM   G+  +V+ C 
Sbjct: 482 SKIAVELLREMPAHGL-APDVITYSAVIASCAMGRQWEEALDLFREMQRQGITPDVVSCN 540

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
             I    +    ++ + V G     G+ PD
Sbjct: 541 TAINACAQGGWWEEALDVLGEMPTMGLVPD 570



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 136/287 (47%), Gaps = 6/287 (2%)

Query: 183 FPMETIFYNVTMKSLRFGR-----QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNL 237
            P + +  N+   S+  G      Q++    L  EM  N +  D ITYS+ I+   +   
Sbjct: 317 MPTKGVVANIITYSIVIGACAKWGQWEEAVALLREMQENGVAPDVITYSSTISACAKKGQ 376

Query: 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
           ++EA+     M   G+ P+ ++Y  ++   AK G+  E + L +   A G  PD I +S 
Sbjct: 377 WEEAVGLLREMPMEGVTPNAISYGIVISACAKRGRWREAIDLLQEMQAHGVPPDVINYSA 436

Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
                 ++  ++   ++L+EM + G+ PN++ YN+ ++A  K G+  +A  L  EM   G
Sbjct: 437 AIDACAQASRWEQALWLLREMPATGLTPNVISYNSAIDACAKTGRSKIAVELLREMPAHG 496

Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417
           L PD  T +A+I      R  ++AL+L+  M+      D +  NT +N CA  G  EEA 
Sbjct: 497 LAPDVITYSAVIASCAMGRQWEEALDLFREMQRQGITPDVVSCNTAINACAQGGWWEEAL 556

Query: 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
            +  +M       PD  SY   ++    G      I+L  EMS +G+
Sbjct: 557 DVLGEMPTMGLV-PDAISYRTAIDACAKGDRWKEIIDLLREMSTVGL 602



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 83/359 (23%), Positives = 167/359 (46%), Gaps = 4/359 (1%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           P      +A+    + + W+++      + ++   P + + Y+  + +     +++    
Sbjct: 184 PDSQNYSSAIAACGNARQWERAVELLASMAARGT-PPDVLTYSSAIAACAKVSRWKEAVG 242

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L   M    ++ + I YS  I+  ++   ++ A++  + M   GL PD +TYS ++D  A
Sbjct: 243 LLRSMKGQGVKPNVIVYSAAISACRKGGQWETAVDLLKEMPAVGLAPDVITYSTVIDACA 302

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           K G+ E    L       G   + I +S++     + G ++    +L+EM+  GV P+++
Sbjct: 303 KRGQWEPAFRLLMEMPTKGVVANIITYSIVIGACAKWGQWEEAVALLREMQENGVAPDVI 362

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK-ARWAKDALELWER 387
            Y++ + A  K G+   A  L  EM   G+TP+  +   +I    K  RW ++A++L + 
Sbjct: 363 TYSSTISACAKKGQWEEAVGLLREMPMEGVTPNAISYGIVISACAKRGRW-REAIDLLQE 421

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           M+ +  P D I Y+  ++ CA     E+A  L  +M  +    P+  SY + ++     G
Sbjct: 422 MQAHGVPPDVINYSAAIDACAQASRWEQALWLLREMPATGL-TPNVISYNSAIDACAKTG 480

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLC 506
               A+EL  EM   G+A +V+  + +I      R+ ++ + +F     +G+ PD   C
Sbjct: 481 RSKIAVELLREMPAHGLAPDVITYSAVIASCAMGRQWEEALDLFREMQRQGITPDVVSC 539



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 150/344 (43%), Gaps = 16/344 (4%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           W+++      +  + + P    +  V     + GR  + I+ L  EM ++ +  D I YS
Sbjct: 377 WEEAVGLLREMPMEGVTPNAISYGIVISACAKRGRWREAID-LLQEMQAHGVPPDVINYS 435

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
             I    + + +++A+     M  TGL P+ ++Y++ +D  AK+G+ +  + L     A 
Sbjct: 436 AAIDACAQASRWEQALWLLREMPATGLTPNVISYNSAIDACAKTGRSKIAVELLREMPAH 495

Query: 287 GWKPDPIAFSV------LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
           G  PD I +S       +G+ + E+ D      + +EM+  G+ P++V  NT + A  + 
Sbjct: 496 GLAPDVITYSAVIASCAMGRQWEEALD------LFREMQRQGITPDVVSCNTAINACAQG 549

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA-RWAKDALELWERMRENKWPMDFIL 399
           G    A  +  EM   GL PD  +    I    K  RW K+ ++L   M       D I 
Sbjct: 550 GWWEEALDVLGEMPTMGLVPDAISYRTAIDACAKGDRW-KEIIDLLREMSTVGLTPDAIS 608

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           Y   ++ C+  GL +EA  L  DM L+    PD  +Y + +N    GG    A  L  +M
Sbjct: 609 YRFAMSACSVDGLWKEALVLLRDM-LAVGLSPDVVTYNSAINACAKGGRWKEATVLLRQM 667

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
              G+A +V      I   G   +    V V       GV P++
Sbjct: 668 PTFGLAPDVNSFNAAIDACGNGDQWGTAVEVLFEMRALGVSPNE 711



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/271 (26%), Positives = 118/271 (43%), Gaps = 1/271 (0%)

Query: 232 AKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291
           AK+   + +A++  +RM + G+ PD   YS+ +     + + E  + L     A G  PD
Sbjct: 161 AKQYGDWRKALDVLDRMQEQGVKPDSQNYSSAIAACGNARQWERAVELLASMAARGTPPD 220

Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
            + +S       +   +     +L+ MK  GV+PN++VY+  + A  K G+   A  L  
Sbjct: 221 VLTYSSAIAACAKVSRWKEAVGLLRSMKGQGVKPNVIVYSAAISACRKGGQWETAVDLLK 280

Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411
           EM   GL PD  T + +I    K    + A  L   M       + I Y+ ++  CA  G
Sbjct: 281 EMPAVGLAPDVITYSTVIDACAKRGQWEPAFRLLMEMPTKGVVANIITYSIVIGACAKWG 340

Query: 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC 471
             EEA  L  +M+  +   PD  +Y++ ++     G  + A+ L  EM   GV  N +  
Sbjct: 341 QWEEAVALLREMQ-ENGVAPDVITYSSTISACAKKGQWEEAVGLLREMPMEGVTPNAISY 399

Query: 472 TCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
             +I    K  R  + + +       GV PD
Sbjct: 400 GIVISACAKRGRWREAIDLLQEMQAHGVPPD 430



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 104/235 (44%), Gaps = 1/235 (0%)

Query: 177 IKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCN 236
           + +  L P + I Y+  + S   GRQ++    L  EM    I  D ++ +T I    +  
Sbjct: 492 MPAHGLAP-DVITYSAVIASCAMGRQWEEALDLFREMQRQGITPDVVSCNTAINACAQGG 550

Query: 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS 296
            ++EA++    M   GL+PD ++Y   +D  AK  + +E++ L       G  PD I++ 
Sbjct: 551 WWEEALDVLGEMPTMGLVPDAISYRTAIDACAKGDRWKEIIDLLREMSTVGLTPDAISYR 610

Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356
                    G +     +L++M ++G+ P++V YN+ + A  K G+   A  L  +M   
Sbjct: 611 FAMSACSVDGLWKEALVLLRDMLAVGLSPDVVTYNSAINACAKGGRWKEATVLLRQMPTF 670

Query: 357 GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411
           GL PD  +  A I   G       A+E+   MR      +   Y T +  C   G
Sbjct: 671 GLAPDVNSFNAAIDACGNGDQWGTAVEVLFEMRALGVSPNEATYLTAMYACKRCG 725



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 81/177 (45%), Gaps = 1/177 (0%)

Query: 166 FWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITY 225
           +W+++      + +  L P + I Y   + +   G +++ I  L  EM +  +  D I+Y
Sbjct: 551 WWEEALDVLGEMPTMGLVP-DAISYRTAIDACAKGDRWKEIIDLLREMSTVGLTPDAISY 609

Query: 226 STIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVA 285
              ++      L+ EA+     M   GL PD VTY++ ++  AK G+ +E   L  +   
Sbjct: 610 RFAMSACSVDGLWKEALVLLRDMLAVGLSPDVVTYNSAINACAKGGRWKEATVLLRQMPT 669

Query: 286 SGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
            G  PD  +F+      G    +     VL EM++LGV PN   Y T + A  + G+
Sbjct: 670 FGLAPDVNSFNAAIDACGNGDQWGTAVEVLFEMRALGVSPNEATYLTAMYACKRCGE 726


>gi|302822703|ref|XP_002993008.1| hypothetical protein SELMODRAFT_136281 [Selaginella moellendorffii]
 gi|300139208|gb|EFJ05954.1| hypothetical protein SELMODRAFT_136281 [Selaginella moellendorffii]
          Length = 431

 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 151/324 (46%), Gaps = 9/324 (2%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           F + +    L P +T+ YNV +  L          +L   M S     D+ TY+ +I   
Sbjct: 71  FLDKMIKTGLEP-DTLLYNVVLDGLGKANMIDEACKLFASMKSMGCPADDYTYAILIRSL 129

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            RC   +EA   F+ M + G  P    Y+ ++D+Y K+G++E  + + ++ +     PD 
Sbjct: 130 GRCKRDEEATLLFDEMEERGCTPSAPAYTNVIDIYCKAGRIESAMVVLKKMLDKNLAPDD 189

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
              + L      +G  +    + + MK  GV  N V +N +L+  GKAGK GLA    DE
Sbjct: 190 YTLNSLITAVSRTGRTELACEIFERMKKSGVAVNTVSFNAMLDCCGKAGKVGLAYQFMDE 249

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M   G+ P+  T   LI   G+A++A +A ++ + MR      D   Y  ++   A  G 
Sbjct: 250 MEARGIKPNSITFNTLINCLGRAKYASEAYKVLQEMRSAGLTPDVFTYTCMIEAFAKAGN 309

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
           + +A  +F DM+ +  C  +  +Y  +++     G   +A +++ +M + G+  + +  T
Sbjct: 310 MGKAFEMFGDMEKAG-CSANVVTYNLLIDALVKAGRYQDARDIYFDMKKKGILPDAITAT 368

Query: 473 CLIQCLGKARRIDDLVRVFGVSID 496
            L Q  GK        ++ G+S+D
Sbjct: 369 VLQQLAGKC-------KLSGISLD 385



 Score =  125 bits (314), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 86/339 (25%), Positives = 159/339 (46%), Gaps = 9/339 (2%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           Y   ++SL       L     ++M+   +E D + Y+ ++    + N+ DEA + F  M 
Sbjct: 52  YKCVIQSLVKAGNVVLAMDFLDKMIKTGLEPDTLLYNVVLDGLGKANMIDEACKLFASMK 111

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
             G   D+ TY+ ++    +  + EE   L++     G  P   A++ +  ++ ++G  +
Sbjct: 112 SMGCPADDYTYAILIRSLGRCKRDEEATLLFDEMEERGCTPSAPAYTNVIDIYCKAGRIE 171

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               VL++M    + P+    N+L+ A+ + G+  LA  +F+ M +SG+  +  +  A++
Sbjct: 172 SAMVVLKKMLDKNLAPDDYTLNSLITAVSRTGRTELACEIFERMKKSGVAVNTVSFNAML 231

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
              GKA     A +  + M       + I +NTL+N         EA ++ ++M+ S   
Sbjct: 232 DCCGKAGKVGLAYQFMDEMEARGIKPNSITFNTLINCLGRAKYASEAYKVLQEMR-SAGL 290

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
            PD ++YT M+  +   GN+  A E+F +M + G + NV+    LI  L KA R  D   
Sbjct: 291 TPDVFTYTCMIEAFAKAGNMGKAFEMFGDMEKAGCSANVVTYNLLIDALVKAGRYQDARD 350

Query: 490 VFGVSIDRGVKPD-------DRLCG-CLLSVVSLCETSE 520
           ++     +G+ PD        +L G C LS +SL E  +
Sbjct: 351 IYFDMKKKGILPDAITATVLQQLAGKCKLSGISLDENEQ 389



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 78/278 (28%), Positives = 134/278 (48%), Gaps = 3/278 (1%)

Query: 226 STIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVA 285
           + +I    R +   + ++ F+ + K G  P+  TY  ++    K+G V   +   ++ + 
Sbjct: 18  NAVIAAYGRSSRIHKVMDEFQELDKHGSKPNAYTYKCVIQSLVKAGNVVLAMDFLDKMIK 77

Query: 286 SGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGL 345
           +G +PD + ++V+    G++   D    +   MKS+G   +   Y  L+ ++G+  +   
Sbjct: 78  TGLEPDTLLYNVVLDGLGKANMIDEACKLFASMKSMGCPADDYTYAILIRSLGRCKRDEE 137

Query: 346 ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE-NKWPMDFILYNTLL 404
           A  LFDEM E G TP     T +I IY KA   + A+ + ++M + N  P D+ L N+L+
Sbjct: 138 ATLLFDEMEERGCTPSAPAYTNVIDIYCKAGRIESAMVVLKKMLDKNLAPDDYTL-NSLI 196

Query: 405 NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
              +  G  E A  +FE MK S     +  S+ AML+  G  G V  A +  +EM   G+
Sbjct: 197 TAVSRTGRTELACEIFERMKKSGV-AVNTVSFNAMLDCCGKAGKVGLAYQFMDEMEARGI 255

Query: 465 AINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
             N +    LI CLG+A+   +  +V       G+ PD
Sbjct: 256 KPNSITFNTLINCLGRAKYASEAYKVLQEMRSAGLTPD 293



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 91/213 (42%), Gaps = 36/213 (16%)

Query: 302 FGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD 361
           +G S     +    QE+   G +PN   Y  +++++ KAG   LA    D+M+++GL PD
Sbjct: 24  YGRSSRIHKVMDEFQELDKHGSKPNAYTYKCVIQSLVKAGNVVLAMDFLDKMIKTGLEPD 83

Query: 362 EKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFE 421
                                               +LYN +L+      +++EA +LF 
Sbjct: 84  T-----------------------------------LLYNVVLDGLGKANMIDEACKLFA 108

Query: 422 DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
            MK S  C  D+Y+Y  ++   G     + A  LF+EM E G   +    T +I    KA
Sbjct: 109 SMK-SMGCPADDYTYAILIRSLGRCKRDEEATLLFDEMEERGCTPSAPAYTNVIDIYCKA 167

Query: 482 RRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVS 514
            RI+  + V    +D+ + PDD     L++ VS
Sbjct: 168 GRIESAMVVLKKMLDKNLAPDDYTLNSLITAVS 200



 Score = 41.6 bits (96), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 55/117 (47%), Gaps = 2/117 (1%)

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
           KP+ Y+Y  ++      GNV  A++  ++M + G+  + +    ++  LGKA  ID+  +
Sbjct: 46  KPNAYTYKCVIQSLVKAGNVVLAMDFLDKMIKTGLEPDTLLYNVVLDGLGKANMIDEACK 105

Query: 490 VFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ--ANPKLVAFLNLIE 544
           +F      G   DD     L+  +  C+  E+   +   +++    P   A+ N+I+
Sbjct: 106 LFASMKSMGCPADDYTYAILIRSLGRCKRDEEATLLFDEMEERGCTPSAPAYTNVID 162


>gi|9502388|gb|AAF88095.1|AC025417_23 T12C24.15 [Arabidopsis thaliana]
          Length = 735

 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 96/361 (26%), Positives = 166/361 (45%), Gaps = 5/361 (1%)

Query: 145 ITEIPHQPTRENALLILNSLKFWQK---SYFFFNWIKSQNLFPMETIFYNVTMKSLRFGR 201
           + E+ H+PT      ++N L    K   +    + +      P E + Y   +K +    
Sbjct: 168 MVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNE-VTYGPVLKVMCKSG 226

Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS 261
           Q  L  +L  +M   +I+LD + YS II    +    D A   F  M   G   D + Y+
Sbjct: 227 QTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYT 286

Query: 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
            ++  +  +G+ ++   L    +     PD +AFS L   F + G       + +EM   
Sbjct: 287 TLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQR 346

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
           G+ P+ V Y +L++   K  +   A  + D MV  G  P+ +T   LI  Y KA    D 
Sbjct: 347 GISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDG 406

Query: 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
           LEL+ +M       D + YNTL+    ++G +E A+ LF++M +S   +PD  SY  +L+
Sbjct: 407 LELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEM-VSRRVRPDIVSYKILLD 465

Query: 442 IYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
                G  + A+E+FE++ +  + +++     +I  +  A ++DD   +F     +GVKP
Sbjct: 466 GLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKP 525

Query: 502 D 502
           D
Sbjct: 526 D 526



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 137/304 (45%), Gaps = 1/304 (0%)

Query: 201 RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTY 260
           +Q+ L+  L  +M    I  +  T S +I C  RC     A     ++ K G  PD VT+
Sbjct: 86  KQYDLVLDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTF 145

Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
           S +++     G+V E L L +R V  G KP  I  + L      +G       ++  M  
Sbjct: 146 STLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVE 205

Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380
            G QPN V Y  +L+ M K+G+  LA  L  +M E  +  D    + +I    K     +
Sbjct: 206 TGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDN 265

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
           A  L+  M    +  D I+Y TL+      G  ++  +L  DM +     PD  +++A++
Sbjct: 266 AFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDM-IKRKITPDVVAFSALI 324

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
           + +   G +  A EL +EM + G++ + +  T LI    K  ++D    +  + + +G  
Sbjct: 325 DCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCG 384

Query: 501 PDDR 504
           P+ R
Sbjct: 385 PNIR 388



 Score = 89.0 bits (219), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 73/340 (21%), Positives = 150/340 (44%), Gaps = 23/340 (6%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           +T+ Y   +       Q      + + MVS     +  T++ +I    + NL D+ +E F
Sbjct: 351 DTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELF 410

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
            +M   G++ D VTY+ ++  + + GK+E    L++  V+   +PD +++ +L     ++
Sbjct: 411 RKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDN 470

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G+ +    + ++++   ++ ++ +YN ++  M  A K   A  LF  +   G+ PD KT 
Sbjct: 471 GEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTY 530

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
             +I    K     +A  L+ +M E+    +   YN L+      G   ++ +L E++K 
Sbjct: 531 NIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKR 590

Query: 426 SDYC---------------------KPDNYSYTAMLNIYG--SGGNVDNAIELFEEMSEL 462
             +                      +PD +++T +L  +      +V +A  LF+ M  +
Sbjct: 591 CGFSVDASTLRFALSTLARMLKAGHEPDVFTFTTLLRPFCLEENASVYDAPTLFKNMKAM 650

Query: 463 GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           G   NV+    +I+ L     I  +  V     +RG +P+
Sbjct: 651 GYKPNVVTYNTVIKGLLNGNMISQVPGVLDQMFERGCQPN 690



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 80/195 (41%), Gaps = 24/195 (12%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK-------V 273
           D  TY+ +I    +     EA   F +M + G  P+  TY+ ++  +   G        +
Sbjct: 526 DVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLI 585

Query: 274 EEV---------------LSLYERGVASGWKPDPIAFSVLGKMFG--ESGDYDGIRYVLQ 316
           EE+               LS   R + +G +PD   F+ L + F   E+        + +
Sbjct: 586 EEIKRCGFSVDASTLRFALSTLARMLKAGHEPDVFTFTTLLRPFCLEENASVYDAPTLFK 645

Query: 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
            MK++G +PN+V YNT+++ +           + D+M E G  P+  T +  I    K  
Sbjct: 646 NMKAMGYKPNVVTYNTVIKGLLNGNMISQVPGVLDQMFERGCQPNAVTKSTFISGLCKQD 705

Query: 377 WAKDALELWERMREN 391
               A+ L  +M  +
Sbjct: 706 LHGSAILLLRKMEND 720



 Score = 42.4 bits (98), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 67/154 (43%), Gaps = 1/154 (0%)

Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYG 373
           + QEM     +P L+ ++ L   + +  +  L   L  +M   G+  +  TL+ +I    
Sbjct: 59  LFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCCC 118

Query: 374 KARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDN 433
           + R    A     ++ +  +  D + ++TL+N     G V EA  L + M    + KP  
Sbjct: 119 RCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGH-KPTL 177

Query: 434 YSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
            +  A++N     G V +A+ L + M E G   N
Sbjct: 178 ITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPN 211



 Score = 39.7 bits (91), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 36/175 (20%), Positives = 74/175 (42%), Gaps = 3/175 (1%)

Query: 346 ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405
           A  LF EM  S   P     + L  +  + +     L+L ++M       +    + ++N
Sbjct: 56  AVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMIN 115

Query: 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
            C     +  A      +    Y +PD  +++ ++N     G V  A+EL + M E+G  
Sbjct: 116 CCCRCRKLSLAFSAMGKIIKLGY-EPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHK 174

Query: 466 INVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSE 520
             ++    L+  L    ++ D V +    ++ G +P++   G +L V  +C++ +
Sbjct: 175 PTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKV--MCKSGQ 227


>gi|226507918|ref|NP_001144813.1| uncharacterized protein LOC100277891 [Zea mays]
 gi|195647376|gb|ACG43156.1| hypothetical protein [Zea mays]
          Length = 597

 Score =  132 bits (333), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 86/363 (23%), Positives = 158/363 (43%), Gaps = 3/363 (0%)

Query: 180 QNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFD 239
           +N  P     YN  +  L   R  +   ++   M       +  TY  +I    + N   
Sbjct: 235 RNGIPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTZTYXLMINVYGKANQPM 294

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
            ++  F  M   G  P+  TY+A+++ +A+ G  E+   ++E    +G +PD  A++ L 
Sbjct: 295 SSLRVFREMKSVGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALM 354

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
           + +  +G   G   +   M+ +G +P+   YN L++A G+AG    A + F E+ + G+ 
Sbjct: 355 EAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAFGRAGLHQEAEAAFQELKQQGMR 414

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
           P  K+   L+  + ++       E+  ++ ++    D    N +LN     G +++ ERL
Sbjct: 415 PTMKSHMLLLSAHARSGNVARCEEVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERL 474

Query: 420 FEDMKLSDYCK---PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
           F  M+  D      PD  +Y  ++N YG  G +D     F  ++  G+A +V+  T  I 
Sbjct: 475 FAAMERGDGASAGAPDTSTYNVLVNAYGRAGYLDRMEAAFRSLAARGLAADVVTWTSRIG 534

Query: 477 CLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKL 536
              + +     +RVF   +D G  PD      LL+  S     E V  ++  + +    L
Sbjct: 535 AYARKKEYGQCLRVFEEMVDAGCYPDAGTAKVLLAACSDERQVEQVTAIVRSMHKDAKTL 594

Query: 537 VAF 539
            A 
Sbjct: 595 FAL 597



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 84/345 (24%), Positives = 159/345 (46%), Gaps = 6/345 (1%)

Query: 156 NALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVS 215
           N  + L   + W+       W+  ++ F  + I YN+ + +  +G++ QL E  A  M  
Sbjct: 141 NVAVQLRLNRQWEPIITVCEWVLRRSSFRPDIICYNLLIDA--YGQKRQLSEAEAAYMAL 198

Query: 216 NEIEL--DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKV 273
            E        TY+ ++           A      M + G+ P    Y+A LD   K+   
Sbjct: 199 LEARCVPTEDTYALLLRAYCGSGQLHRAEGVISEMQRNGIPPTATVYNAYLDGLLKARCS 258

Query: 274 EEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTL 333
           E+ + +Y+R      + +   + ++  ++G++        V +EMKS+G +PN+  Y  L
Sbjct: 259 EKAVEVYQRMKKERCRTNTZTYXLMINVYGKANQPMSSLRVFREMKSVGCKPNICTYTAL 318

Query: 334 LEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKW 393
           + A  + G    A  +F+EM ++G  PD     AL++ Y +A   + A E++  M     
Sbjct: 319 VNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGC 378

Query: 394 PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAI 453
             D   YN L++     GL +EAE  F+++K     +P   S+  +L+ +   GNV    
Sbjct: 379 EPDRASYNILVDAFGRAGLHQEAEAAFQELKQQGM-RPTMKSHMLLLSAHARSGNVARCE 437

Query: 454 ELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRG 498
           E+  ++ + G+  +      ++   G+A R+DD+ R+F  +++RG
Sbjct: 438 EVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLF-AAMERG 481


>gi|297849270|ref|XP_002892516.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338358|gb|EFH68775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 607

 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 88/324 (27%), Positives = 159/324 (49%), Gaps = 7/324 (2%)

Query: 183 FPMETIFYNVTMKSLRFGRQFQLI--EQLANEMVSNEIELDNITYSTIITCAKRCNLFDE 240
           FP+    +N+ M   +F ++  +   +++ +E+    +    ++++T+I    +    D 
Sbjct: 236 FPLNVYVFNILMN--KFCKEGNICDAQKVFDEITKRSLRPTVVSFNTLINGYCKVGNLDV 293

Query: 241 AIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGK 300
                  M K+   PD  TYSA+++   K  K++    L+      G  P+ + F+ L  
Sbjct: 294 GFRLKHHMEKSRTRPDVFTYSALINALCKENKMDGAHRLFYEMCERGLIPNDVIFTTLIH 353

Query: 301 MFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTP 360
               +G  D ++   Q+M S G+QP++V+YNTL+    K G    AR++ D M+  GL P
Sbjct: 354 GHSRNGQIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRP 413

Query: 361 DEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL-NMCADIGLVEEAERL 419
           D+ T T LI  + +      ALE+ + M +N   +D + ++ L+  MC + G V +AER 
Sbjct: 414 DKVTYTTLIDGFCRGGDVDTALEIRKEMDQNGIELDRVGFSALICGMCKE-GRVIDAERA 472

Query: 420 FEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479
             +M L    KPD+ +YT M++ +   G+     +L +EM   G   NV+    L+  L 
Sbjct: 473 LREM-LRAGMKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHIPNVVTYNVLLNGLC 531

Query: 480 KARRIDDLVRVFGVSIDRGVKPDD 503
           K  ++ +   +    ++ GV PDD
Sbjct: 532 KLGQMKNADMLLDAMLNVGVVPDD 555



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 101/404 (25%), Positives = 166/404 (41%), Gaps = 72/404 (17%)

Query: 162 NSLKFWQKSYF-FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIEL 220
           N L    +S F FF +I SQ  F      Y V  + L     F   + L   +VS + + 
Sbjct: 92  NPLSLPHRSIFAFFKFISSQPEFRFTVETYFVMARFLAIHEMFVEAQSLIELVVSRKGK- 150

Query: 221 DNITYSTIITCAKR-----CNLFDEA--IEWFERMYKTGLMPDEVTY------------- 260
            N   S  I+  +      C+   +A  I + +     G +PD +               
Sbjct: 151 -NSASSVFISLVEMRGTPMCDFLVDALMITYMD----LGFIPDVIQCFRLSRKHNFVVPI 205

Query: 261 ---SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQE 317
                +LD   K      V   Y   + +G+  +   F++L   F + G+    + V  E
Sbjct: 206 RGCGNLLDRMMKLNPTGTVWGFYMEILDAGFPLNVYVFNILMNKFCKEGNICDAQKVFDE 265

Query: 318 MKSLGVQPNLVVYNTLLEAMGKAG-----------------KPGL--------------- 345
           +    ++P +V +NTL+    K G                 +P +               
Sbjct: 266 ITKRSLRPTVVSFNTLINGYCKVGNLDVGFRLKHHMEKSRTRPDVFTYSALINALCKENK 325

Query: 346 ---ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL--ELWERMRENKWPMDFILY 400
              A  LF EM E GL P++   T L  I+G +R  +  L  E +++M       D +LY
Sbjct: 326 MDGAHRLFYEMCERGLIPNDVIFTTL--IHGHSRNGQIDLMKESYQKMLSKGLQPDIVLY 383

Query: 401 NTLLN-MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           NTL+N  C +  LV  A R   D  +    +PD  +YT +++ +  GG+VD A+E+ +EM
Sbjct: 384 NTLVNGFCKNGDLV--AARNIVDGMIRRGLRPDKVTYTTLIDGFCRGGDVDTALEIRKEM 441

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
            + G+ ++ +G + LI  + K  R+ D  R     +  G+KPDD
Sbjct: 442 DQNGIELDRVGFSALICGMCKEGRVIDAERALREMLRAGMKPDD 485



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 109/227 (48%), Gaps = 4/227 (1%)

Query: 179 SQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLF 238
           S+ L P + + YN  +              + + M+   +  D +TY+T+I    R    
Sbjct: 373 SKGLQP-DIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKVTYTTLIDGFCRGGDV 431

Query: 239 DEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
           D A+E  + M + G+  D V +SA++    K G+V +        + +G KPD + ++++
Sbjct: 432 DTALEIRKEMDQNGIELDRVGFSALICGMCKEGRVIDAERALREMLRAGMKPDDVTYTMM 491

Query: 299 GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
              F + GD      +L+EM+S G  PN+V YN LL  + K G+   A  L D M+  G+
Sbjct: 492 MDAFCKKGDAQTGFKLLKEMQSDGHIPNVVTYNVLLNGLCKLGQMKNADMLLDAMLNVGV 551

Query: 359 TPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405
            PD+ T   L++  G  R A +A + +++  E     D   Y +L+N
Sbjct: 552 VPDDITYNTLLE--GHHRHA-NASKHYKQKPEIGIVADLASYKSLVN 595


>gi|410110065|gb|AFV61112.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
           citrodora]
          Length = 435

 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 92/302 (30%), Positives = 153/302 (50%), Gaps = 1/302 (0%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L +EM    +  D  TYST+IT   +  LFD A+ W ++M +  +  D V YS ++++  
Sbjct: 3   LFDEMRERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSR 62

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           K     + +S++ R   SG+ PD +A++ +  +FG++  +   R ++ EMK+ GV PN  
Sbjct: 63  KLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARALISEMKTAGVMPNTA 122

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            Y+TLL    +  K   A S+F EM E     D  T   +I +YG+   AK+A +L+  M
Sbjct: 123 SYSTLLTMYVENKKFIEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM 182

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
           R+     + + YNTLL +  D  L  EA  LF  M+  +  + +  +Y +M+ IYG    
Sbjct: 183 RKMGIETNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKN-IEQNVVTYNSMMMIYGKTLE 241

Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGC 508
            + A  L +EM   G+  N +  + +I   GK  ++D    +F      GV+ D  L   
Sbjct: 242 HEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQT 301

Query: 509 LL 510
           ++
Sbjct: 302 MI 303



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 79/345 (22%), Positives = 161/345 (46%), Gaps = 6/345 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K     P + + YN  +      + F+    L +EM +  +  +  +YS
Sbjct: 67  YSKAISIFSRLKRSGFTP-DLVAYNAMINVFGKAKLFREARALISEMKTAGVMPNTASYS 125

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY + G  +E   L+      
Sbjct: 126 TLLTMYVENKKFIEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 185

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G + + ++++ L +++G++  +    ++ + M+   ++ N+V YN+++   GK  +   A
Sbjct: 186 GIETNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKA 245

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R +   +D +LY T++  
Sbjct: 246 NNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVA 305

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K      PDN      ++I    G ++ A  +F +  + G   
Sbjct: 306 YERAGLVAHAKRLLHELK-----SPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVK 360

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
           ++     +I    K ++  + V VF      G  PD  +   +L+
Sbjct: 361 DITVFERMIHLFSKYKKYANAVEVFDKMRGLGYFPDSNVIALVLN 405



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 127/268 (47%), Gaps = 1/268 (0%)

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
           F+ M +  L PD  TYS ++  + K G  +  LS  ++        D + +S L ++  +
Sbjct: 4   FDEMRERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRK 63

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
             DY     +   +K  G  P+LV YN ++   GKA     AR+L  EM  +G+ P+  +
Sbjct: 64  LCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARALISEMKTAGVMPNTAS 123

Query: 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
            + L+ +Y + +   +AL ++  MRE K  +D    N ++++   +G+ +EA++LF  M+
Sbjct: 124 YSTLLTMYVENKKFIEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR 183

Query: 425 LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484
                + +  SY  +L +YG       AI LF  M    +  NV+    ++   GK    
Sbjct: 184 KMG-IETNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEH 242

Query: 485 DDLVRVFGVSIDRGVKPDDRLCGCLLSV 512
           +    +     +RG++P+      ++S+
Sbjct: 243 EKANNLIQEMQNRGIEPNSITYSTIISI 270



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 123/246 (50%), Gaps = 5/246 (2%)

Query: 218 IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL 277
           IE + ++Y+T++       LF EAI  F  M +  +  + VTY++++ +Y K+ + E+  
Sbjct: 187 IETNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKAN 246

Query: 278 SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
           +L +     G +P+ I +S +  ++G+ G  D    + Q+++S GV+ + V+Y T++ A 
Sbjct: 247 NLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAY 306

Query: 338 GKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDF 397
            +AG    A+ L  E+     +PD       I I   A   ++A  ++ +  +     D 
Sbjct: 307 ERAGLVAHAKRLLHELK----SPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDI 362

Query: 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE 457
            ++  ++++ +       A  +F+ M+   Y  PD+     +LN YG    +D A +++ 
Sbjct: 363 TVFERMIHLFSKYKKYANAVEVFDKMRGLGYF-PDSNVIALVLNAYGKLHELDKANDVYM 421

Query: 458 EMSELG 463
           EM E+G
Sbjct: 422 EMQEVG 427



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 81/176 (46%), Gaps = 11/176 (6%)

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
             LFDEM E  L+PD  T + LI  +GK      AL   ++M +++ P D +LY+ L+ +
Sbjct: 1   HGLFDEMRERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIEL 60

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
              +    +A  +F  +K S +  PD  +Y AM+N++G       A  L  EM   GV  
Sbjct: 61  SRKLCDYSKAISIFSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARALISEMKTAGVMP 119

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDV 522
           N    + L+    + ++  + + VF          + R   CLL + + C    DV
Sbjct: 120 NTASYSTLLTMYVENKKFIEALSVF---------SEMREIKCLLDLTT-CNIMIDV 165



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 106/238 (44%), Gaps = 10/238 (4%)

Query: 156 NALL-ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGR--QFQLIEQLANE 212
           N LL +    + + ++   F  ++ +N+     + YN  M  + +G+  + +    L  E
Sbjct: 195 NTLLRVYGDAELFGEAIHLFRLMQRKNI-EQNVVTYNSMM--MIYGKTLEHEKANNLIQE 251

Query: 213 MVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK 272
           M +  IE ++ITYSTII+   +    D A   F+++  +G+  D+V Y  ++  Y ++G 
Sbjct: 252 MQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGL 311

Query: 273 VEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNT 332
           V       +R +     PD I       +   +G  +   YV ++    G   ++ V+  
Sbjct: 312 VAHA----KRLLHELKSPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFER 367

Query: 333 LLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
           ++    K  K   A  +FD+M   G  PD   +  ++  YGK      A +++  M+E
Sbjct: 368 MIHLFSKYKKYANAVEVFDKMRGLGYFPDSNVIALVLNAYGKLHELDKANDVYMEMQE 425


>gi|410110127|gb|AFV61143.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           origanoides]
          Length = 408

 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 92/295 (31%), Positives = 151/295 (51%), Gaps = 7/295 (2%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L +EM    +  D  TYST+IT   +  LFD A+ W ++M +  +  D V YS ++++  
Sbjct: 2   LFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSR 61

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           K     + +S++ R   SG+ PD +A++ +  +FG++  +   R ++ EMK+ GV PN  
Sbjct: 62  KLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTT 121

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            Y+TLL    +  K   A S+F EM E     D  T   +I +YG+   AK+A +L+  M
Sbjct: 122 SYSTLLXMYVENKKFLEALSVFSEMREIKCLLDLXTCNIMIDVYGQLGMAKEADKLFWGM 181

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
           R+     + + YNTLL +  D  L  EA  LF  M+  +  + +  +Y +M+ IYG    
Sbjct: 182 RKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKN-IEQNVVTYNSMMMIYGKTLE 240

Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF------GVSIDR 497
            + A  L +EM   G+  N +  + +I   GK  ++D    +F      GV ID+
Sbjct: 241 HEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQ 295



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 164/345 (47%), Gaps = 6/345 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K     P + + YN  +      + F+    L +EM +  +  +  +YS
Sbjct: 66  YSKAISIFSRLKRSGFTP-DLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYS 124

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++        F EA+  F  M +   + D  T + ++DVY + G  +E   L+      
Sbjct: 125 TLLXMYVENKKFLEALSVFSEMREIKCLLDLXTCNIMIDVYGQLGMAKEADKLFWGMRKM 184

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   ++ N+V YN+++   GK  +   A
Sbjct: 185 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKA 244

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R +   +D IL+ T++  
Sbjct: 245 NNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVA 304

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K     +PDN      ++I    G ++ A  +F +  + G   
Sbjct: 305 YERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAVDAGEVK 359

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
           ++     +I  L K ++  ++V VF      G  PD  +   +L+
Sbjct: 360 DITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSNVIAVVLN 404



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 127/268 (47%), Gaps = 1/268 (0%)

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
           F+ M +  L PD  TYS ++  + K G  +  LS  ++        D + +S L ++  +
Sbjct: 3   FDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRK 62

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
             DY     +   +K  G  P+LV YN ++   GKA     ARSL  EM  +G+ P+  +
Sbjct: 63  LCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTS 122

Query: 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
            + L+ +Y + +   +AL ++  MRE K  +D    N ++++   +G+ +EA++LF  M+
Sbjct: 123 YSTLLXMYVENKKFLEALSVFSEMREIKCLLDLXTCNIMIDVYGQLGMAKEADKLFWGMR 182

Query: 425 LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484
                +P+  SY  +L +YG       AI LF  M    +  NV+    ++   GK    
Sbjct: 183 KMG-IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEH 241

Query: 485 DDLVRVFGVSIDRGVKPDDRLCGCLLSV 512
           +    +      RG++P+      ++S+
Sbjct: 242 EKANNLIQEMQSRGIEPNSITYSTIISI 269



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 97/220 (44%), Gaps = 1/220 (0%)

Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYG 373
           +  EM+   + P+   Y+TL+   GK G    A S   +M +  +  D    + LI++  
Sbjct: 2   LFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSR 61

Query: 374 KARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDN 433
           K      A+ ++ R++ + +  D + YN ++N+     L  EA  L  +MK +    P+ 
Sbjct: 62  KLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAG-VMPNT 120

Query: 434 YSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGV 493
            SY+ +L +Y        A+ +F EM E+   +++  C  +I   G+     +  ++F  
Sbjct: 121 TSYSTLLXMYVENKKFLEALSVFSEMREIKCLLDLXTCNIMIDVYGQLGMAKEADKLFWG 180

Query: 494 SIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN 533
               G++P+      LL V    E   +   +   +Q+ N
Sbjct: 181 MRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKN 220



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/228 (21%), Positives = 101/228 (44%), Gaps = 9/228 (3%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGR--QFQLI 206
           P+  +    L +    + + ++   F  ++ +N+     + YN  M  + +G+  + +  
Sbjct: 188 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNI-EQNVVTYNSMM--MIYGKTLEHEKA 244

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
             L  EM S  IE ++ITYSTII+   +    D A   F+++  +G+  D++ +  ++  
Sbjct: 245 NNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVA 304

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
           Y ++G V       +R +    +PD I       +   +G  +   YV ++    G   +
Sbjct: 305 YERAGLVAHA----KRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAVDAGEVKD 360

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK 374
           + V+  ++  + K  K      +FD+M   G  PD   +  ++  YGK
Sbjct: 361 ITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSNVIAVVLNAYGK 408


>gi|357159762|ref|XP_003578551.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Brachypodium distachyon]
          Length = 534

 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 93/349 (26%), Positives = 167/349 (47%), Gaps = 9/349 (2%)

Query: 167 WQKSYFFFNWIKSQNLFPMETI--FYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNIT 224
           + ++  FFN +      P +++   Y   M  L     F L   L +EM    I + +  
Sbjct: 114 FPEALAFFNHVLPS--LPTDSLPELYASMMDLLAKHHHFPLARHLLDEMRKRSIPISSQV 171

Query: 225 YSTIITCAKRCNLFDEAIEWFERMYK-TGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
              +I    R  +  EA + F  M +  G +PD    +++L   +K     E  +L++  
Sbjct: 172 ILALIRRYVRAGMSSEASDLFRSMEEYGGGVPDPAVLASLLGALSKKRLASEAQALFD-S 230

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
             S + PD + ++ L   +  SG  D    V  EM+  G+ PN+  Y  +++AM +AG+ 
Sbjct: 231 YKSVFTPDVVLYTTLVHAWCRSGCLDKAEQVFAEMQQAGIMPNVYTYTAVIDAMYRAGQV 290

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
             A+ L  +M++SG  P+  T  A+++ + KA  ++  L++  +MR+     D I YN L
Sbjct: 291 PRAQELLCQMIDSGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMRQLGCDPDIITYNFL 350

Query: 404 LNMCADIGL--VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461
           +      G   ++ A +L   M ++  C PD +++  ML +    GNVD A +L+E M E
Sbjct: 351 METHCGKGQSNLDAAMKLLLKM-IAKGCTPDCHTFNPMLKLVVVLGNVDAAHKLYERMQE 409

Query: 462 LGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
           L    NV+    L++  GK + +D ++R+      +GV+P+    G L+
Sbjct: 410 LQCKPNVITYNLLMKLFGKDKSMDMVLRIKKDMDAQGVEPNVNTYGALI 458



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 109/227 (48%), Gaps = 8/227 (3%)

Query: 184 PMETIFYNVTMKS-LRFGRQFQLIEQLANEMVSNEIELDNITYSTII--TCAKRCNLFDE 240
           P  T  +N  M++ ++ GR  Q++ Q+ N+M     + D ITY+ ++   C K  +  D 
Sbjct: 306 PPNTATFNAIMRAHVKAGRSEQVL-QVHNQMRQLGCDPDIITYNFLMETHCGKGQSNLDA 364

Query: 241 AIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGK 300
           A++   +M   G  PD  T++ +L +    G V+    LYER      KP+ I +++L K
Sbjct: 365 AMKLLLKMIAKGCTPDCHTFNPMLKLVVVLGNVDAAHKLYERMQELQCKPNVITYNLLMK 424

Query: 301 MFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVE-SGLT 359
           +FG+    D +  + ++M + GV+PN+  Y  L+E     G    A +   EM+E   L 
Sbjct: 425 LFGKDKSMDMVLRIKKDMDAQGVEPNVNTYGALIETFCGRGNWKRAYATLREMLEVKSLK 484

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMREN---KWPMDFILYNTL 403
           P +     ++ +  KA   +   EL E M +    K P D  L+  +
Sbjct: 485 PKKPVYDMVLVLLRKAGQLRKHEELVELMADRGFIKRPSDDALWRAI 531



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 111/238 (46%), Gaps = 6/238 (2%)

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
           +Y ++++ + K     LAR L DEM +  +    + + ALI+ Y +A  + +A +L+  M
Sbjct: 136 LYASMMDLLAKHHHFPLARHLLDEMRKRSIPISSQVILALIRRYVRAGMSSEASDLFRSM 195

Query: 389 RENKWPM-DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
            E    + D  +  +LL   +   L  EA+ LF+  K      PD   YT +++ +   G
Sbjct: 196 EEYGGGVPDPAVLASLLGALSKKRLASEAQALFDSYK--SVFTPDVVLYTTLVHAWCRSG 253

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCG 507
            +D A ++F EM + G+  NV   T +I  + +A ++     +    ID G  P+     
Sbjct: 254 CLDKAEQVFAEMQQAGIMPNVYTYTAVIDAMYRAGQVPRAQELLCQMIDSGCPPNTATFN 313

Query: 508 CLLSVVSLCETSEDVGKVITCLQQ--ANPKLVAFLNLIEDN-STGFENIKEEFRNVIK 562
            ++        SE V +V   ++Q   +P ++ +  L+E +   G  N+    + ++K
Sbjct: 314 AIMRAHVKAGRSEQVLQVHNQMRQLGCDPDIITYNFLMETHCGKGQSNLDAAMKLLLK 371


>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
 gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
          Length = 636

 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 87/286 (30%), Positives = 142/286 (49%), Gaps = 1/286 (0%)

Query: 217 EIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV 276
           E E + IT++ +I    + N   EA  +F +M K G +P+E TY+ +++ + K  KV   
Sbjct: 2   ECEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRA 61

Query: 277 LSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA 336
             L +    SG  P+ + +S +   F      D    + ++M   G  PNLV YNTLL  
Sbjct: 62  YLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSG 121

Query: 337 MGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMD 396
           + + G    A  L DEM E GL PD+ +   L+    K      AL+++E       P D
Sbjct: 122 LCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPD 181

Query: 397 FILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELF 456
            + Y+TL+      G ++EA +LFE M+  + C+PD  ++TA+++    G  +  A ++ 
Sbjct: 182 VVAYSTLIAGLCKTGRLDEACKLFEKMR-ENSCEPDVVTFTALMDGLCKGDRLQEAQQVL 240

Query: 457 EEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           E M +     NV+  + LI  L K  ++ D   VF   I RG++P+
Sbjct: 241 ETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPN 286



 Score =  132 bits (331), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 83/319 (26%), Positives = 160/319 (50%), Gaps = 1/319 (0%)

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           P + + Y+  +  L    +     +L  +M  N  E D +T++ ++    + +   EA +
Sbjct: 179 PPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQ 238

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
             E M      P+ +TYS+++D   K+G+V +   +++R +  G +P+ + ++ L   F 
Sbjct: 239 VLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFC 298

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
            +   D    +++EM + G  P+++ YNTL++ + K G+   A  LF +M      PD  
Sbjct: 299 MTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVI 358

Query: 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
           T + LI  + K      A  L++ M +     D + ++TL+    + GLV++AERL E+M
Sbjct: 359 TYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEM 418

Query: 424 KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483
             SD C PD Y+YT++++ +   G +  A  + + M++ G   NV+  T LI    +A +
Sbjct: 419 VASD-CSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGK 477

Query: 484 IDDLVRVFGVSIDRGVKPD 502
                ++    +  GV+P+
Sbjct: 478 PTVAYKLLEEMVGNGVQPN 496



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 99/376 (26%), Positives = 178/376 (47%), Gaps = 8/376 (2%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           +F  +K +   P E   YNV +       +      L  EM  + +  + +TYST+I   
Sbjct: 29  YFAKMKKKGTVPNEWT-YNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGF 87

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            R    D A + F +M + G MP+ VTY+ +L    ++G ++E   L +     G +PD 
Sbjct: 88  CRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDK 147

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
            ++  L     ++G  D    V ++  +    P++V Y+TL+  + K G+   A  LF++
Sbjct: 148 FSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGRLDEACKLFEK 207

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M E+   PD  T TAL+    K    ++A ++ E M +     + I Y++L++     G 
Sbjct: 208 MRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQ 267

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
           V +A+ +F+ M +    +P+  +Y ++++ +     VD+A+ L EEM+  G   +++   
Sbjct: 268 VRDAQEVFKRMIVRGI-EPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYN 326

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSE-DVGKVI--TCL 529
            LI  L K  R  +  R+FG    +   PD     CL+     C+    D+ + +    L
Sbjct: 327 TLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIG--GFCKLERIDMARTLFDDML 384

Query: 530 QQAN-PKLVAFLNLIE 544
           +QA  P +V F  L+E
Sbjct: 385 KQAVLPDVVTFSTLVE 400



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 144/297 (48%), Gaps = 2/297 (0%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F  ++  +  P + + +   M  L  G + Q  +Q+   M       + ITYS++I   
Sbjct: 204 LFEKMRENSCEP-DVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGL 262

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +     +A E F+RM   G+ P+ VTY++++  +  +  V+  L L E   A+G  PD 
Sbjct: 263 CKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDI 322

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           I ++ L     ++G       +  +MK+    P+++ Y+ L+    K  +  +AR+LFD+
Sbjct: 323 ITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDD 382

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M++  + PD  T + L++ Y  A    DA  L E M  +    D   Y +L++    +G 
Sbjct: 383 MLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGR 442

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVM 469
           + EA R+ + M     C+P+  +YTA+++ +   G    A +L EEM   GV  NV+
Sbjct: 443 MVEARRVLKRMAKRG-CQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNGVQPNVI 498



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 84/277 (30%), Positives = 136/277 (49%), Gaps = 4/277 (1%)

Query: 186 ETIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEW 244
           + I YN  +  L + GR  +   +L  +M +     D ITYS +I    +    D A   
Sbjct: 321 DIITYNTLIDGLCKTGRAPE-ANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTL 379

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
           F+ M K  ++PD VT+S +++ Y  +G V++   L E  VAS   PD   ++ L   F +
Sbjct: 380 FDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCK 439

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
            G     R VL+ M   G QPN+V Y  L++A  +AGKP +A  L +EMV +G+ P+  T
Sbjct: 440 VGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNGVQPNVIT 499

Query: 365 LTALIKIYGKARWAKDALELWERM-RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
             +LI  +      ++A ++ ER+ R+     D   Y  +++     G +  A  L E +
Sbjct: 500 YRSLIGGFCGTGDLEEARKMLERLERDENCKADMFAYRVMMDGLCRTGRMSAALELLEAI 559

Query: 424 KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           K S    P +  Y A++     G  +  A+E+ EEM+
Sbjct: 560 KQSGT-PPRHDIYVALIRGLCQGKELGKAMEVLEEMT 595



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 121/255 (47%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  EM +     D ITY+T+I    +     EA   F  M      PD +TYS ++  + 
Sbjct: 309 LMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFC 368

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           K  +++   +L++  +     PD + FS L + +  +G  D    +L+EM +    P++ 
Sbjct: 369 KLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVY 428

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            Y +L++   K G+   AR +   M + G  P+  T TALI  + +A     A +L E M
Sbjct: 429 TYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEM 488

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
             N    + I Y +L+      G +EEA ++ E ++  + CK D ++Y  M++     G 
Sbjct: 489 VGNGVQPNVITYRSLIGGFCGTGDLEEARKMLERLERDENCKADMFAYRVMMDGLCRTGR 548

Query: 449 VDNAIELFEEMSELG 463
           +  A+EL E + + G
Sbjct: 549 MSAALELLEAIKQSG 563



 Score = 47.0 bits (110), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 68/149 (45%), Gaps = 2/149 (1%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKT-GLMPDEVTYSAILDV 266
           +L  EMV N ++ + ITY ++I         +EA +  ER+ +      D   Y  ++D 
Sbjct: 483 KLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKMLERLERDENCKADMFAYRVMMDG 542

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMK-SLGVQP 325
             ++G++   L L E    SG  P    +  L +   +  +      VL+EM  S   +P
Sbjct: 543 LCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEMTLSRKSRP 602

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMV 354
           N   Y  +++ + + G+   A +L DE++
Sbjct: 603 NAEAYEAVIQELAREGRHEEANALADELL 631


>gi|414879860|tpg|DAA56991.1| TPA: hypothetical protein ZEAMMB73_837882 [Zea mays]
          Length = 677

 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 128/532 (24%), Positives = 223/532 (41%), Gaps = 26/532 (4%)

Query: 87  LSKPKSTWVNPTKPRRSVLSLQRQKRST----YSYNPRVRDLKLFARKLNDCDNTEEAFL 142
           L   KS W+NP  P    L  QR K +       ++ R  D+      L+      +  L
Sbjct: 41  LPAAKSVWLNPNLPSSHPLH-QRHKSAAELQQRQHDDRTIDVPALVTALSAARTAPD--L 97

Query: 143 RAITEIPHQPTRENAL-LILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGR 201
            A+    H+P     L  +L+ L   ++     + +      P   I YN+ ++S     
Sbjct: 98  AAVLAT-HRPVSARLLGALLSRLPDPRRGVALLDLLAPDLPAPTLLIPYNLLLRSACRAG 156

Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS 261
           + +L   L  EM    +  D  +YST++    R    D A+ +   M    + PD + +S
Sbjct: 157 ELRLASGLLLEMRERGVTPDAFSYSTLLAALTRAGHLDHALTFLPLMEDDAVAPDLILFS 216

Query: 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY-DGIRYVLQEMKS 320
            ++ +  + G   + L+L+ R  A+G +PD  A++     + +S    D  R +L +M +
Sbjct: 217 NLIHLALRGGDAPKALALFSRLRAAGIRPDLKAYNAAVAAYCKSDLLRDAKRMLLHDMPA 276

Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM-VESGLTPDEKTLTALIKIYGKARWAK 379
            GV P+   Y+ +L A+ + G+   A SLF  M   + + PD      ++  YG+   A+
Sbjct: 277 DGVAPDAETYSPILAALARRGRHLAAVSLFSHMRAVARVKPDISVFNIILNAYGQLDLAR 336

Query: 380 DALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK--------LSDYCKP 431
           +A  L+  MR    P   + YNT+L +  D GL  EA  LF+ M+             KP
Sbjct: 337 EADRLFWSMRRAGVPPSVVTYNTMLRVYGDAGLFGEAVHLFDLMRSTSDGNGGAGSSVKP 396

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           +  +Y  M+ IYG     + A  L +EM  +GV  + +  + ++    KA ++D   R+F
Sbjct: 397 NVVTYNTMITIYGKSLEDEKAGRLVQEMQAIGVQPDAITYSTILSIWVKAGKLDRAARLF 456

Query: 492 GVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQ--QANPKLVAFLNLIEDNSTG 549
               + G + D  L   ++             +++  L+  +  PK  A   L   ++  
Sbjct: 457 EKLREAGTEIDPVLYQTMVVAYERAGLVSQAKRLLRDLKDPEGIPKETAIKILA--SAGR 514

Query: 550 FENIKEEFRNVIKDTEV---DARRPFCNCLIDICRNRNLNERAHELLYLGTL 598
            E     FR  +   E+      R   +      R+RN+ E   E+  LG L
Sbjct: 515 LEEAAWLFRRAVNTGEIKDSSVHRAMMDLYAKNRRHRNVIEVFDEMRKLGQL 566



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/335 (23%), Positives = 145/335 (43%), Gaps = 15/335 (4%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTG-LMPDEVTYSAILDVY 267
           L ++M ++ +  D  TYS I+    R      A+  F  M     + PD   ++ IL+ Y
Sbjct: 270 LLHDMPADGVAPDAETYSPILAALARRGRHLAAVSLFSHMRAVARVKPDISVFNIILNAY 329

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG----- 322
            +     E   L+     +G  P  + ++ + +++G++G +    ++   M+S       
Sbjct: 330 GQLDLAREADRLFWSMRRAGVPPSVVTYNTMLRVYGDAGLFGEAVHLFDLMRSTSDGNGG 389

Query: 323 ----VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWA 378
               V+PN+V YNT++   GK+ +   A  L  EM   G+ PD  T + ++ I+ KA   
Sbjct: 390 AGSSVKPNVVTYNTMITIYGKSLEDEKAGRLVQEMQAIGVQPDAITYSTILSIWVKAGKL 449

Query: 379 KDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTA 438
             A  L+E++RE    +D +LY T++      GLV +A+RL  D+K      P+      
Sbjct: 450 DRAARLFEKLREAGTEIDPVLYQTMVVAYERAGLVSQAKRLLRDLK-----DPEGIPKET 504

Query: 439 MLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRG 498
            + I  S G ++ A  LF      G   +      ++    K RR  +++ VF      G
Sbjct: 505 AIKILASAGRLEEAAWLFRRAVNTGEIKDSSVHRAMMDLYAKNRRHRNVIEVFDEMRKLG 564

Query: 499 VKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN 533
             PD  +    ++     +  +    +   +++A 
Sbjct: 565 QLPDSEIIATAMNAYGKLKEFDKAAALYQAMREAG 599



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 139/325 (42%), Gaps = 47/325 (14%)

Query: 198 RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDE 257
           R GR    +   ++      ++ D   ++ I+    + +L  EA   F  M + G+ P  
Sbjct: 295 RRGRHLAAVSLFSHMRAVARVKPDISVFNIILNAYGQLDLAREADRLFWSMRRAGVPPSV 354

Query: 258 VTYSAILDVYAKSGKVEEVLSLYE---------RGVASGWKPDPIAFSVLGKMFGESGDY 308
           VTY+ +L VY  +G   E + L++          G  S  KP+ + ++ +  ++G+S + 
Sbjct: 355 VTYNTMLRVYGDAGLFGEAVHLFDLMRSTSDGNGGAGSSVKPNVVTYNTMITIYGKSLED 414

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
           +    ++QEM+++GVQP+ + Y+T+L    KAGK   A  LF+++ E+G   D      +
Sbjct: 415 EKAGRLVQEMQAIGVQPDAITYSTILSIWVKAGKLDRAARLFEKLREAGTEIDPVLYQTM 474

Query: 369 IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFE------D 422
           +  Y +A     A  L   +R+ K P + I   T + + A  G +EEA  LF       +
Sbjct: 475 VVAYERAGLVSQAKRL---LRDLKDP-EGIPKETAIKILASAGRLEEAAWLFRRAVNTGE 530

Query: 423 MKLSD--------YCK--------------------PDNYSYTAMLNIYGSGGNVDNAIE 454
           +K S         Y K                    PD+      +N YG     D A  
Sbjct: 531 IKDSSVHRAMMDLYAKNRRHRNVIEVFDEMRKLGQLPDSEIIATAMNAYGKLKEFDKAAA 590

Query: 455 LFEEMSELGVAINVMGCTCLIQCLG 479
           L++ M E G   +      +I  LG
Sbjct: 591 LYQAMREAGCVFSDRVHFQMISLLG 615


>gi|357438771|ref|XP_003589662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478710|gb|AES59913.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 988

 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 93/317 (29%), Positives = 154/317 (48%), Gaps = 3/317 (0%)

Query: 187 TIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
            + YN  M SL R GR       L + MV+ ++  D ++Y+T+I    R   F EA+  F
Sbjct: 312 VVTYNTIMYSLCRLGRVSDARRYL-DVMVNEDLMPDLVSYNTLIYGYSRLGNFAEALLLF 370

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
             +    L+P  VTY+ ++D   ++G ++    + +  +  G  PD + F++L + F + 
Sbjct: 371 SELRSKNLVPSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTILVRGFCQM 430

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G+    + +  EM S G++P+ + Y T +    K G P  A  + +EM   G  PD  T 
Sbjct: 431 GNLPMAKELFDEMLSRGLKPDCIAYTTRIVGELKLGNPSKAFGMKEEMKAEGFPPDLITY 490

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
             LI    K     DA EL ++MR      D + Y ++++     GL+ +AE +F DM L
Sbjct: 491 NVLINGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAHLISGLLRKAEEVFSDM-L 549

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
                P   +YT +++ Y   G +D A + F+EM + GV+ NV+    LI  L K   +D
Sbjct: 550 KKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQDKGVSPNVITYNALIYGLCKENMMD 609

Query: 486 DLVRVFGVSIDRGVKPD 502
               +F     +GV P+
Sbjct: 610 VAYNLFAEMESKGVSPN 626



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 159/348 (45%), Gaps = 36/348 (10%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YNV +  L    +F   ++L  +M    +++   TY+ +I    +  +F+EA +    M 
Sbjct: 245 YNVLVNGLSGKGEFDRAKELIEQMSMLGLKVSAHTYNPLIRGFCKKEMFEEANDLRREML 304

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
             G +P  VTY+ I+    + G+V +     +  V     PD ++++ L   +   G++ 
Sbjct: 305 GRGALPTVVTYNTIMYSLCRLGRVSDARRYLDVMVNEDLMPDLVSYNTLIYGYSRLGNFA 364

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               +  E++S  + P++V YNTL++   + G   +A+ + D+M++ GL PD  T T L+
Sbjct: 365 EALLLFSELRSKNLVPSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTILV 424

Query: 370 KIY---GKARWAKD--------------------------------ALELWERMRENKWP 394
           + +   G    AK+                                A  + E M+   +P
Sbjct: 425 RGFCQMGNLPMAKELFDEMLSRGLKPDCIAYTTRIVGELKLGNPSKAFGMKEEMKAEGFP 484

Query: 395 MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIE 454
            D I YN L+N    +G  ++A  L + M+L     PD+ +YT++++ +   G +  A E
Sbjct: 485 PDLITYNVLINGLCKLGNFDDANELVQKMRLEGIV-PDHVTYTSIIHAHLISGLLRKAEE 543

Query: 455 LFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           +F +M + G+  +V+  T LI       R+D   + F    D+GV P+
Sbjct: 544 VFSDMLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQDKGVSPN 591



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 101/196 (51%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           +  EM +     D ITY+ +I    +   FD+A E  ++M   G++PD VTY++I+  + 
Sbjct: 474 MKEEMKAEGFPPDLITYNVLINGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAHL 533

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
            SG + +   ++   +  G  P  + ++VL   +   G  D  +    EM+  GV PN++
Sbjct: 534 ISGLLRKAEEVFSDMLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQDKGVSPNVI 593

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            YN L+  + K     +A +LF EM   G++P++ T T LI      ++ +DAL+L++ M
Sbjct: 594 TYNALIYGLCKENMMDVAYNLFAEMESKGVSPNKYTYTILINENSNLQYWQDALKLYKDM 653

Query: 389 RENKWPMDFILYNTLL 404
            + +   D   ++ L+
Sbjct: 654 LDREIKPDSCTHSALM 669



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 134/285 (47%), Gaps = 1/285 (0%)

Query: 191 NVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYK 250
           N  +K L+       +E++ + M+  +I    +T++T++    +      A+E  + M  
Sbjct: 176 NRVLKLLKDKSMVNEVEEVYSVMIKCQIRPTIVTFNTMMDSRCKEGEVGRAVEVLDVMRM 235

Query: 251 TGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDG 310
            G  P++V+Y+ +++  +  G+ +    L E+    G K     ++ L + F +   ++ 
Sbjct: 236 FGCDPNDVSYNVLVNGLSGKGEFDRAKELIEQMSMLGLKVSAHTYNPLIRGFCKKEMFEE 295

Query: 311 IRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK 370
              + +EM   G  P +V YNT++ ++ + G+   AR   D MV   L PD  +   LI 
Sbjct: 296 ANDLRREMLGRGALPTVVTYNTIMYSLCRLGRVSDARRYLDVMVNEDLMPDLVSYNTLIY 355

Query: 371 IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCK 430
            Y +     +AL L+  +R        + YNTL++     G ++ A+ + +DM     C 
Sbjct: 356 GYSRLGNFAEALLLFSELRSKNLVPSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHGLC- 414

Query: 431 PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLI 475
           PD  ++T ++  +   GN+  A ELF+EM   G+  + +  T  I
Sbjct: 415 PDVVTFTILVRGFCQMGNLPMAKELFDEMLSRGLKPDCIAYTTRI 459



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 112/236 (47%), Gaps = 1/236 (0%)

Query: 205 LIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAIL 264
           + ++L +EM+S  ++ D I Y+T I    +     +A    E M   G  PD +TY+ ++
Sbjct: 435 MAKELFDEMLSRGLKPDCIAYTTRIVGELKLGNPSKAFGMKEEMKAEGFPPDLITYNVLI 494

Query: 265 DVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQ 324
           +   K G  ++   L ++    G  PD + ++ +      SG       V  +M   G+ 
Sbjct: 495 NGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAHLISGLLRKAEEVFSDMLKKGIH 554

Query: 325 PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384
           P++V Y  L+ +    G+   A+  FDEM + G++P+  T  ALI    K      A  L
Sbjct: 555 PSVVTYTVLIHSYAVRGRLDFAKKYFDEMQDKGVSPNVITYNALIYGLCKENMMDVAYNL 614

Query: 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
           +  M       +   Y  L+N  +++   ++A +L++DM L    KPD+ +++A++
Sbjct: 615 FAEMESKGVSPNKYTYTILINENSNLQYWQDALKLYKDM-LDREIKPDSCTHSALM 669



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 86/381 (22%), Positives = 150/381 (39%), Gaps = 42/381 (11%)

Query: 139 EAFLRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQ-NLFPMETIF-------- 189
           E  LR +  + H+P        L +L+F       F W++ Q N    ET F        
Sbjct: 52  EFLLRVLNSVKHRP--------LTALRF-------FRWVEKQPNFHRSETAFVAILDILA 96

Query: 190 --------YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEA 241
                   Y V  K++       +++ L         E+       +I    +  + ++ 
Sbjct: 97  KNGFMKPAYWVMEKAIEVKVDGGVLDVLVGIGCGRNSEVSVKLLDLLIQVFAKKLILEKC 156

Query: 242 IEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKM 301
           +  F +M   GL+PD    + +L +      V EV  +Y   +    +P  + F+ +   
Sbjct: 157 LMVFYKMVNNGLLPDVRNCNRVLKLLKDKSMVNEVEEVYSVMIKCQIRPTIVTFNTMMDS 216

Query: 302 FGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD 361
             + G+      VL  M+  G  PN V YN L+  +   G+   A+ L ++M   GL   
Sbjct: 217 RCKEGEVGRAVEVLDVMRMFGCDPNDVSYNVLVNGLSGKGEFDRAKELIEQMSMLGLKVS 276

Query: 362 EKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFE 421
             T   LI+ + K    ++A +L   M         + YNT++     +G V +A R + 
Sbjct: 277 AHTYNPLIRGFCKKEMFEEANDLRREMLGRGALPTVVTYNTIMYSLCRLGRVSDARR-YL 335

Query: 422 DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
           D+ +++   PD  SY  ++  Y   GN   A+ LF E+    +  +V+    L       
Sbjct: 336 DVMVNEDLMPDLVSYNTLIYGYSRLGNFAEALLLFSELRSKNLVPSVVTYNTL------- 388

Query: 482 RRIDDLVRVFGVSIDRGVKPD 502
             ID   R   + I +G+K D
Sbjct: 389 --IDGGCRTGNLDIAKGMKDD 407



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 133/291 (45%), Gaps = 1/291 (0%)

Query: 212 EMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG 271
           +MV+N +  D    + ++   K  ++ +E  E +  M K  + P  VT++ ++D   K G
Sbjct: 162 KMVNNGLLPDVRNCNRVLKLLKDKSMVNEVEEVYSVMIKCQIRPTIVTFNTMMDSRCKEG 221

Query: 272 KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYN 331
           +V   + + +     G  P+ ++++VL       G++D  + ++++M  LG++ +   YN
Sbjct: 222 EVGRAVEVLDVMRMFGCDPNDVSYNVLVNGLSGKGEFDRAKELIEQMSMLGLKVSAHTYN 281

Query: 332 TLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN 391
            L+    K      A  L  EM+  G  P   T   ++    +     DA    + M   
Sbjct: 282 PLIRGFCKKEMFEEANDLRREMLGRGALPTVVTYNTIMYSLCRLGRVSDARRYLDVMVNE 341

Query: 392 KWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDN 451
               D + YNTL+   + +G   EA  LF +++ S    P   +Y  +++     GN+D 
Sbjct: 342 DLMPDLVSYNTLIYGYSRLGNFAEALLLFSELR-SKNLVPSVVTYNTLIDGGCRTGNLDI 400

Query: 452 AIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           A  + ++M + G+  +V+  T L++   +   +     +F   + RG+KPD
Sbjct: 401 AKGMKDDMIKHGLCPDVVTFTILVRGFCQMGNLPMAKELFDEMLSRGLKPD 451


>gi|410110135|gb|AFV61147.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           rotundifolia]
          Length = 440

 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 92/295 (31%), Positives = 151/295 (51%), Gaps = 7/295 (2%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L +EM    +  D  TYST+IT   +  LFD A+ W ++M +  +  D V YS ++++  
Sbjct: 3   LFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELSR 62

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           K     + +S++ R   SG+ PD +A++ +  +FG++  +   R ++ EMK+ GV PN  
Sbjct: 63  KLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTT 122

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            Y+TLL    +  K   A S+F EM E     D  T   +I +YG+   AK+A +L+  M
Sbjct: 123 SYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM 182

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
           R+     + + YNTLL +  D  L  EA  LF  M+  +  + +  +Y +M+ IYG    
Sbjct: 183 RKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKN-IEQNVVTYNSMMMIYGKTLE 241

Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF------GVSIDR 497
            + A  L +EM   G+  N +  + +I   GK  ++D    +F      GV ID+
Sbjct: 242 HEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQ 296



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/366 (22%), Positives = 171/366 (46%), Gaps = 6/366 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K     P + + YN  +      + F+    L +EM +  +  +  +YS
Sbjct: 67  YSKAISIFSRLKRSGFTP-DLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYS 125

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY + G  +E   L+      
Sbjct: 126 TLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 185

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   ++ N+V YN+++   GK  +   A
Sbjct: 186 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKA 245

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R +   +D IL+ T++  
Sbjct: 246 NNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVA 305

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K     +PDN      ++I    G ++ A  +F +  + G   
Sbjct: 306 YERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVK 360

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           N+     +I  L K ++  ++V VF      G  PD  +   +L+     +  +    V 
Sbjct: 361 NIAVFERMIHLLSKYKKYANVVEVFDKMRGLGYFPDSNVIAVVLNAYGKLQEFDKANDVY 420

Query: 527 TCLQQA 532
             +Q+ 
Sbjct: 421 MEMQEV 426



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 97/220 (44%), Gaps = 1/220 (0%)

Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYG 373
           +  EM+   + P+   Y+TL+   GK G    A S   +M +  +  D    + LI++  
Sbjct: 3   LFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELSR 62

Query: 374 KARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDN 433
           K      A+ ++ R++ + +  D + YN ++N+     L  EA  L  +MK +    P+ 
Sbjct: 63  KLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAG-VMPNT 121

Query: 434 YSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGV 493
            SY+ +L +Y        A+ +F EM E+   +++  C  +I   G+     +  ++F  
Sbjct: 122 TSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWG 181

Query: 494 SIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN 533
               G++P+      LL V    E   +   +   +Q+ N
Sbjct: 182 MRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKN 221



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/242 (20%), Positives = 100/242 (41%), Gaps = 36/242 (14%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGR--QFQLI 206
           P+  +    L +    + + ++   F  ++ +N+     + YN  M  + +G+  + +  
Sbjct: 189 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNI-EQNVVTYNSMM--MIYGKTLEHEKA 245

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
             L  EM S  IE ++ITYSTII+   +    D A   F+++  +G+  D++ +  ++  
Sbjct: 246 NNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVA 305

Query: 267 Y-------------------------------AKSGKVEEVLSLYERGVASGWKPDPIAF 295
           Y                               A +G++EE   ++ + + +G   +   F
Sbjct: 306 YERAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKNIAVF 365

Query: 296 SVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVE 355
             +  +  +   Y  +  V  +M+ LG  P+  V   +L A GK  +   A  ++ EM E
Sbjct: 366 ERMIHLLSKYKKYANVVEVFDKMRGLGYFPDSNVIAVVLNAYGKLQEFDKANDVYMEMQE 425

Query: 356 SG 357
            G
Sbjct: 426 VG 427


>gi|414591138|tpg|DAA41709.1| TPA: hypothetical protein ZEAMMB73_028111 [Zea mays]
          Length = 583

 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 88/322 (27%), Positives = 152/322 (47%), Gaps = 1/322 (0%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           Y + + SL   R    +E L NEM +N +  D   Y+ +I    R      A +  +   
Sbjct: 250 YTILVDSLSTARDISKVEALFNEMKANNVVGDVYLYTAVINAYCRAGNMRRAAKVLDECV 309

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
             G+ P+E TY  +++ + K G++E    L       G   + I F+ +   +   G  D
Sbjct: 310 GNGVEPNERTYGVLINGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTMIDGYCRKGMVD 369

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               +   M+ +GV+ ++  YNTL   + +  +   A++L   M+E G+ P+  T T LI
Sbjct: 370 DALKIKAAMEKMGVELDIYTYNTLACGLCRVNRLDEAKTLLHIMIEMGVVPNYVTYTTLI 429

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
            I+ K     +A  L+  M E       + YN +++     G + EAER  ++M+   + 
Sbjct: 430 SIHCKDGDMVEARRLFREMAEKGATPSVVTYNVMIDGYTKKGSIREAERFRKEMEKKGFV 489

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
            PD Y+Y ++++ +   G VD A++LFEEM + G   NV+  T LI  L K  R +   +
Sbjct: 490 -PDVYTYASLVHGHCVNGKVDVALKLFEEMKQRGTEPNVVAYTALISGLAKEGRSEAAFQ 548

Query: 490 VFGVSIDRGVKPDDRLCGCLLS 511
           ++   +  G+ PDD L   L+ 
Sbjct: 549 LYDDMLKAGLIPDDSLYSALVG 570



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 65/282 (23%), Positives = 129/282 (45%), Gaps = 7/282 (2%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS---GKVEEVLSL 279
           +  S ++    +    D+A    + M + G+  + + Y+++LD Y +    G+V+E+L +
Sbjct: 178 LAASVVVDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNSLLDCYVRQKDDGRVQEILEI 237

Query: 280 YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
            E     G +     +++L      + D   +  +  EMK+  V  ++ +Y  ++ A  +
Sbjct: 238 MEN---EGIEATVGTYTILVDSLSTARDISKVEALFNEMKANNVVGDVYLYTAVINAYCR 294

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
           AG    A  + DE V +G+ P+E+T   LI  + K    + A  L   M+     ++ I+
Sbjct: 295 AGNMRRAAKVLDECVGNGVEPNERTYGVLINGFCKIGQMEAAEMLLADMQGQGVGLNQII 354

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           +NT+++     G+V++A ++   M+     + D Y+Y  +         +D A  L   M
Sbjct: 355 FNTMIDGYCRKGMVDDALKIKAAMEKMG-VELDIYTYNTLACGLCRVNRLDEAKTLLHIM 413

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
            E+GV  N +  T LI    K   + +  R+F    ++G  P
Sbjct: 414 IEMGVVPNYVTYTTLISIHCKDGDMVEARRLFREMAEKGATP 455



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 114/242 (47%), Gaps = 1/242 (0%)

Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
           S ++D   KSG+V++   L +     G   + + ++ L   +    D   ++ +L+ M++
Sbjct: 181 SVVVDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNSLLDCYVRQKDDGRVQEILEIMEN 240

Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380
            G++  +  Y  L++++  A       +LF+EM  + +  D    TA+I  Y +A   + 
Sbjct: 241 EGIEATVGTYTILVDSLSTARDISKVEALFNEMKANNVVGDVYLYTAVINAYCRAGNMRR 300

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
           A ++ +    N    +   Y  L+N    IG +E AE L  DM+       +   +  M+
Sbjct: 301 AAKVLDECVGNGVEPNERTYGVLINGFCKIGQMEAAEMLLADMQ-GQGVGLNQIIFNTMI 359

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
           + Y   G VD+A+++   M ++GV +++     L   L +  R+D+   +  + I+ GV 
Sbjct: 360 DGYCRKGMVDDALKIKAAMEKMGVELDIYTYNTLACGLCRVNRLDEAKTLLHIMIEMGVV 419

Query: 501 PD 502
           P+
Sbjct: 420 PN 421



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 103/234 (44%), Gaps = 2/234 (0%)

Query: 270 SGKVEEVLSLYERGVAS-GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           +G++ +   L ER + S      P+A SV+     +SG  D  R +L +M   GV  N +
Sbjct: 154 AGRLADAAGLLERALGSCPGSVSPLAASVVVDGLCKSGRVDDARRLLDDMPRHGVSLNAL 213

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            YN+LL+   +    G  + + + M   G+     T T L+     AR       L+  M
Sbjct: 214 CYNSLLDCYVRQKDDGRVQEILEIMENEGIEATVGTYTILVDSLSTARDISKVEALFNEM 273

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
           + N    D  LY  ++N     G +  A ++ ++  + +  +P+  +Y  ++N +   G 
Sbjct: 274 KANNVVGDVYLYTAVINAYCRAGNMRRAAKVLDEC-VGNGVEPNERTYGVLINGFCKIGQ 332

Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           ++ A  L  +M   GV +N +    +I    +   +DD +++       GV+ D
Sbjct: 333 MEAAEMLLADMQGQGVGLNQIIFNTMIDGYCRKGMVDDALKIKAAMEKMGVELD 386


>gi|218197756|gb|EEC80183.1| hypothetical protein OsI_22045 [Oryza sativa Indica Group]
          Length = 577

 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 87/346 (25%), Positives = 168/346 (48%), Gaps = 7/346 (2%)

Query: 198 RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKR--CNLFDEAIEWFERMYKTGLMP 255
           R GR F    QL + M   +IE D ++++T+I    +  C     A+E    + + GL P
Sbjct: 6   RSGR-FDDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCLAAGVALELLHEVRQAGLRP 64

Query: 256 DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVL 315
           D +TY+ ++   ++   +++ ++++E  +AS  +PD   ++ +  + G  G       + 
Sbjct: 65  DAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVSVHGRCGKAQEAELMF 124

Query: 316 QEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA 375
           +E+   G QP+ V YN+LL A  K G       + +E+V++G   D  T   +I +YGK 
Sbjct: 125 KELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIHMYGKM 184

Query: 376 RWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYS 435
                AL L++ MR      D + Y  L++    +  + EA ++ E+M  +   KP   +
Sbjct: 185 GRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGL-KPTLVT 243

Query: 436 YTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSI 495
           ++A++  Y   G  D+A   F+ M E GV  + +    ++    ++     L+ ++   I
Sbjct: 244 FSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSDETRKLMVLYRAMI 303

Query: 496 DRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQ---QANPKLVA 538
             G KPDD L   LL+ ++     +++  VI  ++   + NP +++
Sbjct: 304 KDGYKPDDGLYQVLLAALAKGNEHDEIEGVIQDMEAVFEMNPLVIS 349



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 107/405 (26%), Positives = 184/405 (45%), Gaps = 14/405 (3%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
             + ++   L P + I YN  + +   G        +  EM+++E   D  TY+ +++  
Sbjct: 53  LLHEVRQAGLRP-DAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVSVH 111

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            RC    EA   F+ + + G  PD VTY+++L  +AK G VE V  + E  V +G++ D 
Sbjct: 112 GRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDG 171

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           I ++ +  M+G+ G  D    +  EM+++G  P+ V Y  L++++GK  +   A  + +E
Sbjct: 172 ITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEE 231

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M ++GL P   T +ALI  Y K+    DA   ++RM E+    D + Y  +L++ A    
Sbjct: 232 MADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSDE 291

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
             +   L+  M + D  KPD+  Y  +L     G   D    + ++M     A+  M   
Sbjct: 292 TRKLMVLYRAM-IKDGYKPDDGLYQVLLAALAKGNEHDEIEGVIQDME----AVFEMNPL 346

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQA 532
            +   L KA  I     +   +  +G +PDD     L S +SL   S+    +   LQ A
Sbjct: 347 VISSILIKAECISQGASLLKRACLQGYEPDDGPDRQLASNMSLGVISKSQSAIDASLQGA 406

Query: 533 --NPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNC 575
             +PK +  +        G  N+    R  I+   ++   PF  C
Sbjct: 407 PESPKSIVLV-----TGEGEYNMV-SLRKTIRAYLLEMGSPFLPC 445



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 131/240 (54%), Gaps = 3/240 (1%)

Query: 264 LDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY-DGIRY-VLQEMKSL 321
           + VYA+SG+ ++   L +       +PD ++F+ L     +SG    G+   +L E++  
Sbjct: 1   MGVYARSGRFDDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCLAAGVALELLHEVRQA 60

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
           G++P+ + YNTL+ A  +      A ++F+EM+ S   PD  T  A++ ++G+   A++A
Sbjct: 61  GLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVSVHGRCGKAQEA 120

Query: 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
             +++ + E  +  D + YN+LL   A  G VE  ER+ E++  + + K D  +Y  M++
Sbjct: 121 ELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRK-DGITYNTMIH 179

Query: 442 IYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
           +YG  G +D A+ L++EM  +G   + +  T L+  LGK  RI +  +V     D G+KP
Sbjct: 180 MYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLKP 239


>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
          Length = 731

 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 81/274 (29%), Positives = 145/274 (52%), Gaps = 3/274 (1%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
           +EMV   +  D ++Y+T++    +     EA+  F  M + G+MPD VT+++++ V  K+
Sbjct: 284 DEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKA 343

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
           G +E  ++L  +    G + + + F+ L   F + G  D     ++ MK   ++P++V Y
Sbjct: 344 GNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCY 403

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
           N L+      G+   AR L  EM   GL PD  T + +I  Y K      A EL ++M E
Sbjct: 404 NALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLE 463

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDM-KLSDYCKPDNYSYTAMLNIYGSGGNV 449
                D I Y++L+ +      + +A  LF++M KL    +PD ++YT++++ +   GNV
Sbjct: 464 KGVLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLG--LQPDEFTYTSLIDGHCKEGNV 521

Query: 450 DNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483
           ++A+ L ++M + GV  +V+  + LI  L K+ R
Sbjct: 522 ESALSLHDKMVKAGVLPDVVTYSVLINGLSKSAR 555



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 131/262 (50%), Gaps = 1/262 (0%)

Query: 241 AIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGK 300
           A  +F+ M   G+ P+  TY+ ++      G  +E LS+      +G  P+ + ++ L  
Sbjct: 174 ARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVA 233

Query: 301 MFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTP 360
            F  +G+ DG   ++  M+  G++PNLV +N+++  M KAGK   AR +FDEMV  GL P
Sbjct: 234 AFFRAGEVDGAERLVGMMREGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLAP 293

Query: 361 DEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLF 420
           D  +   L+  Y KA  + +AL ++  M +     D + + +L+++    G +E A  L 
Sbjct: 294 DGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLV 353

Query: 421 EDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK 480
             M+     + +  ++TA+++ +   G +D+A+     M +  +  +V+    LI     
Sbjct: 354 RQMRERGL-QMNEVTFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCM 412

Query: 481 ARRIDDLVRVFGVSIDRGVKPD 502
             R+D+   +      +G+KPD
Sbjct: 413 VGRMDEARELLHEMEAKGLKPD 434



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 120/255 (47%), Gaps = 5/255 (1%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
           T   +V  K+    R   L+ Q    M    ++++ +T++ +I    +    D+A+    
Sbjct: 334 TSLIHVMCKAGNLERAVTLVRQ----MRERGLQMNEVTFTALIDGFCKKGFLDDALLAVR 389

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
            M +  + P  V Y+A+++ Y   G+++E   L     A G KPD + +S +   + ++ 
Sbjct: 390 GMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNC 449

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
           D      + Q+M   GV P+ + Y++L+  +    +   A  LF  M++ GL PDE T T
Sbjct: 450 DTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYT 509

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
           +LI  + K    + AL L ++M +     D + Y+ L+N  +      EA++L   +   
Sbjct: 510 SLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHE 569

Query: 427 DYCKPDNYSYTAMLN 441
           D   P N  Y A+++
Sbjct: 570 DPI-PANTKYDALMH 583



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/314 (22%), Positives = 136/314 (43%), Gaps = 24/314 (7%)

Query: 166 FWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITY 225
           F   +      +K   + P   + YN  +       +     +L +EM +  ++ D +TY
Sbjct: 380 FLDDALLAVRGMKQCRIKP-SVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTY 438

Query: 226 STIITC-AKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
           STII+   K C+    A E  ++M + G++PD +TYS+++ V     ++ +   L++  +
Sbjct: 439 STIISAYCKNCDTH-SAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLFKNMI 497

Query: 285 ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344
             G +PD   ++ L     + G+ +    +  +M   GV P++V Y+ L+  + K+ +  
Sbjct: 498 KLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAM 557

Query: 345 LARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
            A+ L  ++      P      AL+    KA   K  L L +                  
Sbjct: 558 EAQQLLFKLYHEDPIPANTKYDALMHCCRKAEL-KSVLALLK------------------ 598

Query: 405 NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
             C   GL+ EA+++++ M L      D   Y+ +++ +   GNV  A+   ++M + G 
Sbjct: 599 GFCMK-GLMNEADKVYQSM-LDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQGGF 656

Query: 465 AINVMGCTCLIQCL 478
           A N      LI+ L
Sbjct: 657 APNSTSTISLIRGL 670


>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
 gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
 gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 747

 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 87/339 (25%), Positives = 164/339 (48%), Gaps = 1/339 (0%)

Query: 164 LKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNI 223
           L    K+    +  ++    P    +  V   ++R  R     E +  EM+ +++  +  
Sbjct: 147 LSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVF 206

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           TY+ +I         D A+  F++M   G +P+ VTY+ ++D Y K  K+++   L    
Sbjct: 207 TYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSM 266

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
              G +P+ I+++V+       G    + +VL EM   G   + V YNTL++   K G  
Sbjct: 267 ALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNF 326

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
             A  +  EM+  GLTP   T T+LI    KA     A+E  ++MR      +   Y TL
Sbjct: 327 HQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTL 386

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           ++  +  G + EA R+  +M  + +  P   +Y A++N +   G +++AI + E+M E G
Sbjct: 387 VDGFSQKGYMNEAYRVLREMNDNGF-SPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKG 445

Query: 464 VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           ++ +V+  + ++    ++  +D+ +RV    +++G+KPD
Sbjct: 446 LSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPD 484



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 153/314 (48%), Gaps = 1/314 (0%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN+ ++   F     +   L ++M +     + +TY+T+I    +    D+  +    M 
Sbjct: 208 YNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMA 267

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
             GL P+ ++Y+ +++   + G+++EV  +       G+  D + ++ L K + + G++ 
Sbjct: 268 LKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFH 327

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               +  EM   G+ P+++ Y +L+ +M KAG    A    D+M   GL P+E+T T L+
Sbjct: 328 QALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLV 387

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
             + +  +  +A  +   M +N +    + YN L+N     G +E+A  + EDMK     
Sbjct: 388 DGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMK-EKGL 446

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
            PD  SY+ +L+ +    +VD A+ +  EM E G+  + +  + LIQ   + RR  +   
Sbjct: 447 SPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACD 506

Query: 490 VFGVSIDRGVKPDD 503
           ++   +  G+ PD+
Sbjct: 507 LYEEMLRVGLPPDE 520



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/321 (28%), Positives = 158/321 (49%), Gaps = 5/321 (1%)

Query: 174 FNWIKSQNLFPME--TIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIIT 230
           F  ++S  L  +E   I YNV +  L R GR  + +  +  EM      LD +TY+T+I 
Sbjct: 260 FKLLRSMALKGLEPNLISYNVVINGLCREGRMKE-VSFVLTEMNRRGYSLDEVTYNTLIK 318

Query: 231 CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
              +   F +A+     M + GL P  +TY++++    K+G +   +   ++    G  P
Sbjct: 319 GYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCP 378

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
           +   ++ L   F + G  +    VL+EM   G  P++V YN L+      GK   A ++ 
Sbjct: 379 NERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVL 438

Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
           ++M E GL+PD  + + ++  + ++    +AL +   M E     D I Y++L+    + 
Sbjct: 439 EDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQ 498

Query: 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG 470
              +EA  L+E+M L     PD ++YTA++N Y   G+++ A++L  EM E GV  +V+ 
Sbjct: 499 RRTKEACDLYEEM-LRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVT 557

Query: 471 CTCLIQCLGKARRIDDLVRVF 491
            + LI  L K  R  +  R+ 
Sbjct: 558 YSVLINGLNKQSRTREAKRLL 578



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 125/267 (46%), Gaps = 21/267 (7%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D ++YST+++   R    DEA+     M + G+ PD +TYS+++  + +  + +E   LY
Sbjct: 449 DVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLY 508

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
           E  +  G  PD   ++ L   +   GD +    +  EM   GV P++V Y+ L+  + K 
Sbjct: 509 EEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQ 568

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
            +   A+ L  ++      P + T   LI                    EN   ++F   
Sbjct: 569 SRTREAKRLLLKLFYEESVPSDVTYHTLI--------------------ENCSNIEFKSV 608

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
            +L+      G++ EA+++FE M L    KPD  +Y  M++ +   G++  A  L++EM 
Sbjct: 609 VSLIKGFCMKGMMTEADQVFESM-LGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMV 667

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDL 487
           + G  ++ +    L++ L K  ++++L
Sbjct: 668 KSGFLLHTVTVIALVKALHKEGKVNEL 694



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 77/347 (22%), Positives = 148/347 (42%), Gaps = 19/347 (5%)

Query: 173 FFNWIKSQNLFPM--ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEI---------ELD 221
           F NW      F +  + I  ++  K   +     L E +A + + +E          E  
Sbjct: 68  FLNWANPHQFFTLRCKCITLHILTKFKLYKTAQILAEDVAAKTLDDEYASLVFKSLQETY 127

Query: 222 NITYST------IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK-VE 274
           ++ YST      ++    R +L D+A+         G MP  ++Y+A+LD   +S + + 
Sbjct: 128 DLCYSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNIS 187

Query: 275 EVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLL 334
              ++++  + S   P+   +++L + F  +G+ D    +  +M++ G  PN+V YNTL+
Sbjct: 188 FAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLI 247

Query: 335 EAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWP 394
           +   K  K      L   M   GL P+  +   +I    +    K+   +   M    + 
Sbjct: 248 DGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYS 307

Query: 395 MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIE 454
           +D + YNTL+      G   +A  +  +M L     P   +YT++++     GN++ A+E
Sbjct: 308 LDEVTYNTLIKGYCKEGNFHQALVMHAEM-LRHGLTPSVITYTSLIHSMCKAGNMNRAME 366

Query: 455 LFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
             ++M   G+  N    T L+    +   +++  RV     D G  P
Sbjct: 367 FLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSP 413



 Score = 47.0 bits (110), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 41/201 (20%), Positives = 83/201 (41%), Gaps = 15/201 (7%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD-- 265
           QL NEMV   +  D +TYS +I    + +   EA     +++    +P +VTY  +++  
Sbjct: 541 QLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENC 600

Query: 266 -------------VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIR 312
                         +   G + E   ++E  +    KPD  A++++      +GD     
Sbjct: 601 SNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAY 660

Query: 313 YVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIY 372
            + +EM   G   + V    L++A+ K GK     S+   ++ S    + +    L++I 
Sbjct: 661 TLYKEMVKSGFLLHTVTVIALVKALHKEGKVNELNSVIVHVLRSCELSEAEQAKVLVEIN 720

Query: 373 GKARWAKDALELWERMRENKW 393
            +       L++   M ++ +
Sbjct: 721 HREGNMDVVLDVLAEMAKDGF 741


>gi|414591648|tpg|DAA42219.1| TPA: PPR-814b [Zea mays]
          Length = 827

 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 162/357 (45%), Gaps = 36/357 (10%)

Query: 180 QNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFD 239
           Q   P + + YN  + +L   R     E    +MV+  +  +N TY+ +I        + 
Sbjct: 260 QRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWK 319

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEE------------------------ 275
           EA+  F+ M +  ++PD VT S ++    K GK++E                        
Sbjct: 320 EAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIML 379

Query: 276 -----------VLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQ 324
                      +  L++  +  G  PD   F+VL K +   G  D    +  EM+  GV+
Sbjct: 380 NGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVK 439

Query: 325 PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384
           P++V Y T++ A+ + GK   A   F++M++ G+ PD+     LI+ +        A EL
Sbjct: 440 PDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKEL 499

Query: 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYG 444
              +  N   +D + +++++N    +G V +A+ +F D+ ++    PD   Y+ +++ Y 
Sbjct: 500 ISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIF-DLTVNVGLHPDAVVYSMLMDGYC 558

Query: 445 SGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
             G ++ A+ +F+ M   G+  NV+    L+    K  RID+ + +F   + RG+KP
Sbjct: 559 LVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKP 615



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 153/337 (45%), Gaps = 3/337 (0%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  EMV   I  D +TY++++    +    D+A  +  +M    ++P+  TY+ ++  Y+
Sbjct: 254 LFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYS 313

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
            +G+ +E + +++        PD +  S+L     + G     R V   M   G  P++ 
Sbjct: 314 STGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVF 373

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            YN +L      G       LFD M+  G+ PD  T   LIK Y        A+ ++  M
Sbjct: 374 SYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEM 433

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
           R++    D + Y T++     IG +++A   F  M +     PD Y+Y  ++  + + G+
Sbjct: 434 RDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQM-IDQGVAPDKYAYNCLIQGFCTHGS 492

Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGC 508
           +  A EL  E+   G+ ++++  + +I  L K  R+ D   +F ++++ G+ PD  +   
Sbjct: 493 LLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSM 552

Query: 509 LLSVVSLCETSEDVGKVITCLQQAN--PKLVAFLNLI 543
           L+    L    E   +V   +  A   P +V +  L+
Sbjct: 553 LMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLV 589



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 147/294 (50%), Gaps = 2/294 (0%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           FN +  Q + P +   YN  ++           ++L +E+++N + LD + +S+II    
Sbjct: 465 FNQMIDQGVAP-DKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLC 523

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
           +     +A   F+     GL PD V YS ++D Y   GK+E+ L +++  V++G +P+ +
Sbjct: 524 KLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVV 583

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
            +  L   + + G  D    + +EM   G++P+ ++Y+ +++ + +AG+   A+  F EM
Sbjct: 584 VYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKMKFHEM 643

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
            ESG+  D  T   +++   K R   +A+ L++ +R     ++ I  NT+++       V
Sbjct: 644 TESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRV 703

Query: 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
           EEA+ LF  +  S    P+  +Y+ M+      G V+ A ++F  M   G   N
Sbjct: 704 EEAKDLFASISRSRLV-PNVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPN 756



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/360 (23%), Positives = 156/360 (43%), Gaps = 74/360 (20%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS-LYER 282
           TY+ ++ C  R +  + A+ +F ++ +TGL  + +  + +L+ + ++ + +E L  L  R
Sbjct: 126 TYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEALDILLHR 185

Query: 283 GVASGWKPDPIAFSVLGKMF---GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
               G  PD  ++S+L K     G+SG  D +  ++ E  ++   PN+V YNT+++   K
Sbjct: 186 TPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAV-CSPNVVAYNTVIDGFFK 244

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR---------------------WA 378
            G    A  LF EMV+ G+ PD  T  +++    KAR                     W 
Sbjct: 245 EGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWT 304

Query: 379 --------------KDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFE--- 421
                         K+A+ +++ MR +    D +  + L+      G ++EA  +F+   
Sbjct: 305 YNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMA 364

Query: 422 -------------------------------DMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
                                          D+ L D   PD Y++  ++  Y + G +D
Sbjct: 365 MKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLD 424

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
            A+ +F EM + GV  +V+    +I  L +  ++DD +  F   ID+GV PD     CL+
Sbjct: 425 KAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLI 484



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/324 (23%), Positives = 149/324 (45%), Gaps = 37/324 (11%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L + M+ + I  D  T++ +I     C + D+A+  F  M   G+ PD VTY  ++    
Sbjct: 394 LFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALC 453

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           + GK+++ +  + + +  G  PD  A++ L + F   G     + ++ E+ + G+  ++V
Sbjct: 454 RIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIV 513

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            +++++  + K G+   A+++FD  V  GL PD    + L+  Y      + AL +++ M
Sbjct: 514 FFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAM 573

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN-IYGSGG 447
                  + ++Y TL+N    IG ++E   LF +M L    KP    Y+ +++ ++ +G 
Sbjct: 574 VSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREM-LQRGIKPSTILYSIIIDGLFQAGR 632

Query: 448 NV----------------------------------DNAIELFEEMSELGVAINVMGCTC 473
            V                                  D AI LF+E+  + V IN++    
Sbjct: 633 TVPAKMKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNT 692

Query: 474 LIQCLGKARRIDDLVRVFGVSIDR 497
           +I  + + RR+++   +F  SI R
Sbjct: 693 MIDGMFQTRRVEEAKDLFA-SISR 715



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 89/183 (48%), Gaps = 2/183 (1%)

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382
           + P    Y  L++   +A +P LA + F +++ +GL  +      L++ + +A+   +AL
Sbjct: 120 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEAL 179

Query: 383 E-LWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM-KLSDYCKPDNYSYTAML 440
           + L  R  E     D   Y+ LL    D G   +A+ L   M +    C P+  +Y  ++
Sbjct: 180 DILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVI 239

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
           + +   G+V+ A +LF+EM + G+  +++    ++  L KAR +D         +++ V 
Sbjct: 240 DGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVL 299

Query: 501 PDD 503
           P++
Sbjct: 300 PNN 302



 Score = 46.6 bits (109), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 38/187 (20%), Positives = 86/187 (45%), Gaps = 2/187 (1%)

Query: 187 TIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           TI Y++ +  L + GR      +  +EM  + I +D  TY+ ++    +   FDEAI  F
Sbjct: 617 TILYSIIIDGLFQAGRTVPAKMKF-HEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLF 675

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           + +    +  + +T + ++D   ++ +VEE   L+     S   P+ + +S++     + 
Sbjct: 676 KELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPNVVTYSIMITNLIKE 735

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G  +    +   M++ G +PN  + N ++  + K  +   A +   ++ E   + +  T 
Sbjct: 736 GLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTA 795

Query: 366 TALIKIY 372
             L+ ++
Sbjct: 796 MLLVDLF 802


>gi|356517665|ref|XP_003527507.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Glycine max]
          Length = 564

 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 84/344 (24%), Positives = 166/344 (48%), Gaps = 5/344 (1%)

Query: 160 ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIE 219
           + + + F Q S  FFNW  S + FP     YN  +      RQF L   + + M S  +E
Sbjct: 152 VRHGIPFLQ-SLAFFNWSSSLDGFPASPEPYNEMLDLAGKLRQFDLAWHVIDLMKSRGVE 210

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
           +   T+S ++    R  L  EA+  F RM   G  PD V +S ++    K  +  E  S 
Sbjct: 211 ITVHTFSALVRRYVRAGLAAEAVHAFNRMEDYGCTPDMVAFSIVISSLCKKRRANEAQSF 270

Query: 280 YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
           ++  +   ++PD + ++ L   +  +GD      V  +MK  G++PN+  Y+ +++++ +
Sbjct: 271 FD-SLKHRFEPDVVVYTSLVHGWCRAGDISKAEEVFSDMKMAGIKPNVYTYSIVIDSLCR 329

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
            G+   A  +F EM+++G  P+  T  +L++++ KA   +  L+++ +M+    P D I 
Sbjct: 330 CGQITRAHDVFSEMIDAGCDPNAVTFNSLMRVHVKAGRTEKVLKVYNQMKRLGCPADTIS 389

Query: 400 YNTLL-NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458
           YN ++ + C D  L E A+ L  ++ +     P+  ++  +        +V+ A  ++  
Sbjct: 390 YNFIIESHCRDENLEEAAKIL--NLMVKKGVAPNASTFNFIFGCIAKLHDVNGAHRMYAR 447

Query: 459 MSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           M EL    N +    L++   ++R  D ++++     +  V+P+
Sbjct: 448 MKELNCQPNTLTYNILMRMFAESRSTDMVLKMKKEMDESQVEPN 491



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 64/291 (21%), Positives = 128/291 (43%), Gaps = 2/291 (0%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           FF+ +K +  F  + + Y   +            E++ ++M    I+ +  TYS +I   
Sbjct: 270 FFDSLKHR--FEPDVVVYTSLVHGWCRAGDISKAEEVFSDMKMAGIKPNVYTYSIVIDSL 327

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            RC     A + F  M   G  P+ VT+++++ V+ K+G+ E+VL +Y +    G   D 
Sbjct: 328 CRCGQITRAHDVFSEMIDAGCDPNAVTFNSLMRVHVKAGRTEKVLKVYNQMKRLGCPADT 387

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           I+++ + +      + +    +L  M   GV PN   +N +   + K      A  ++  
Sbjct: 388 ISYNFIIESHCRDENLEEAAKILNLMVKKGVAPNASTFNFIFGCIAKLHDVNGAHRMYAR 447

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M E    P+  T   L++++ ++R     L++ + M E++   +   Y  L++M  D+  
Sbjct: 448 MKELNCQPNTLTYNILMRMFAESRSTDMVLKMKKEMDESQVEPNVNTYRILISMFCDMKH 507

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
              A +L  +M      +P+   Y  +L +    G +    EL ++M   G
Sbjct: 508 WNNAYKLMMEMVEEKCLRPNLSVYETVLELLRKAGQLKKHEELVDKMVARG 558



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 124/275 (45%), Gaps = 16/275 (5%)

Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSL----------GVQPNLVVYNTLLEAMGKAG 341
           PI+ SV  ++  + G   G+R+ +  ++SL          G   +   YN +L+  GK  
Sbjct: 136 PISPSVAHRVIEKCG---GVRHGIPFLQSLAFFNWSSSLDGFPASPEPYNEMLDLAGKLR 192

Query: 342 KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYN 401
           +  LA  + D M   G+     T +AL++ Y +A  A +A+  + RM +     D + ++
Sbjct: 193 QFDLAWHVIDLMKSRGVEITVHTFSALVRRYVRAGLAAEAVHAFNRMEDYGCTPDMVAFS 252

Query: 402 TLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461
            +++         EA+  F+ +K     +PD   YT++++ +   G++  A E+F +M  
Sbjct: 253 IVISSLCKKRRANEAQSFFDSLK--HRFEPDVVVYTSLVHGWCRAGDISKAEEVFSDMKM 310

Query: 462 LGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSED 521
            G+  NV   + +I  L +  +I     VF   ID G  P+      L+ V      +E 
Sbjct: 311 AGIKPNVYTYSIVIDSLCRCGQITRAHDVFSEMIDAGCDPNAVTFNSLMRVHVKAGRTEK 370

Query: 522 VGKVITCLQQAN-PKLVAFLNLIEDNSTGFENIKE 555
           V KV   +++   P      N I ++    EN++E
Sbjct: 371 VLKVYNQMKRLGCPADTISYNFIIESHCRDENLEE 405


>gi|302809589|ref|XP_002986487.1| hypothetical protein SELMODRAFT_182414 [Selaginella moellendorffii]
 gi|300145670|gb|EFJ12344.1| hypothetical protein SELMODRAFT_182414 [Selaginella moellendorffii]
          Length = 773

 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 146/622 (23%), Positives = 256/622 (41%), Gaps = 91/622 (14%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITY 225
           ++ S      +K + + P   I YN  + +  + G  ++ +  L  +M    I+ D ITY
Sbjct: 133 YEASLHLLARMKKERVEP-NLITYNTVLNACSKGGLDWEGLLNLFAQMRHEGIQPDLITY 191

Query: 226 STIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS---GKVEEVLSLYER 282
           +T+++      L ++A   F+ M ++G++ D VTY +++D +A S   G+VEE+L   E 
Sbjct: 192 NTLLSACSSRGLVEQAAMVFKTMNESGVVADAVTYKSLVDTFAGSNQLGRVEELLREMED 251

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
               G  PD   ++ L + + ++G+  G   V ++M+  G  P++  Y+TLL   G  G 
Sbjct: 252 ---EGNSPDIAGYNSLIEAYADAGNVHGAAGVFKQMQRGGCAPDVETYSTLLRIYGNQGC 308

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
               RSLF +M E    P   T  +LI+++G+  + ++++ L+  M ++    D   Y+ 
Sbjct: 309 FEQVRSLFSDMKELSTPPTVATYNSLIQVFGEGGYFQESINLFHDMVDSGVKPDDATYSA 368

Query: 403 LLNMCADIGLVEEAERLFEDM--------------KLSDYCK------------------ 430
           LL++C   GL  EA ++ + M               +S Y K                  
Sbjct: 369 LLSVCGRGGLTREAAKIHQHMLTNESTPSLEASAGLISSYGKMAMYKDALVSYYRIREAG 428

Query: 431 --PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLV 488
             P   +Y A++  Y  GG    A      M++ G    V     +++   K    D+ +
Sbjct: 429 LDPQVSAYDALIQGYAKGGLYVEAGSTLYAMNKAGFQAPVSSVNSVMEAYSKVGLHDEAL 488

Query: 489 RVFG-VSIDRGVKPDDRLCGCLLSV--------------VSLCETSEDVGKVITCL---- 529
             F  +    G + D+R    LL V              V + ETS+  G  + CL    
Sbjct: 489 EFFSELQQKEGSEVDERTHETLLGVYCDMGLLEEAKEEFVIIKETSKVPGARVYCLLLSL 548

Query: 530 ----------QQANPKLVAFLNLIE----------DNSTGFENIKEEFRNVIKDTEVDAR 569
                      Q   +++A   L +          D    ++ ++  F + +K  +++  
Sbjct: 549 CVRRSKWDYATQLLDEMIAAGGLHQVVVGIVRGTYDADFSWQVVEYAF-DGLKLRDMEES 607

Query: 570 RPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTAL 629
             F N L+++    N   RA  +L      G +P    KT   WS++V  +S GA  TAL
Sbjct: 608 MDFYNALVELLVYCNQKARAARVLADAMQRGAFPEAFIKTRRVWSVNVHRMSAGATVTAL 667

Query: 630 EEWMWTLAKIVLREEVLPQLFLAETGTG---THKFSQGL--ATAFASHVNKLAAPFRQSE 684
             W   L +     E LP +       G    H+  + L  A    + +   AAP   + 
Sbjct: 668 STWFNDLQEC----EKLPFMTSIVVSCGDIEDHRKVEDLPVAKVVQAFLKHYAAPLETAS 723

Query: 685 GKAGCFVATREDLVSWVQARPS 706
              G  V   E L  W+ + PS
Sbjct: 724 WNEGRIVCKGEALKPWLSSMPS 745



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 129/529 (24%), Positives = 220/529 (41%), Gaps = 90/529 (17%)

Query: 167 WQKSYFFFNWIKSQNLF-PMETIFYNVTMKSLRFGRQ--FQLIEQLANEMVSNEIELDNI 223
           W ++   F +++ Q    P E I+   T+     GR+   +   ++  +M  N+++ +  
Sbjct: 62  WHRALRLFKYMQRQQWCKPTEHIY---TIMIGIMGREGLLEKCSEIFEDMPENDVKWNVY 118

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG-KVEEVLSLYER 282
            ++ +I    R   ++ ++    RM K  + P+ +TY+ +L+  +K G   E +L+L+ +
Sbjct: 119 AFTALINAYGRNGQYEASLHLLARMKKERVEPNLITYNTVLNACSKGGLDWEGLLNLFAQ 178

Query: 283 GVASGWKPDPIAFSVL----------------GKMFGESGDY-DGIRY------------ 313
               G +PD I ++ L                 K   ESG   D + Y            
Sbjct: 179 MRHEGIQPDLITYNTLLSACSSRGLVEQAAMVFKTMNESGVVADAVTYKSLVDTFAGSNQ 238

Query: 314 ------VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
                 +L+EM+  G  P++  YN+L+EA   AG    A  +F +M   G  PD +T + 
Sbjct: 239 LGRVEELLREMEDEGNSPDIAGYNSLIEAYADAGNVHGAAGVFKQMQRGGCAPDVETYST 298

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           L++IYG     +    L+  M+E   P     YN+L+ +  + G  +E+  LF DM +  
Sbjct: 299 LLRIYGNQGCFEQVRSLFSDMKELSTPPTVATYNSLIQVFGEGGYFQESINLFHDM-VDS 357

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK-ARRIDD 486
             KPD+ +Y+A+L++ G GG    A ++ + M       ++     LI   GK A   D 
Sbjct: 358 GVKPDDATYSALLSVCGRGGLTREAAKIHQHMLTNESTPSLEASAGLISSYGKMAMYKDA 417

Query: 487 LV---RVFGVSIDRGVKPDDRL------------CGCLL-------------SVVSLCET 518
           LV   R+    +D  V   D L             G  L             SV S+ E 
Sbjct: 418 LVSYYRIREAGLDPQVSAYDALIQGYAKGGLYVEAGSTLYAMNKAGFQAPVSSVNSVMEA 477

Query: 519 SEDVG------KVITCLQQANPKLV------AFLNLIEDNSTGFENIKEEFRNVIKDTEV 566
              VG      +  + LQQ     V        L +  D     E  KEEF  + + ++V
Sbjct: 478 YSKVGLHDEALEFFSELQQKEGSEVDERTHETLLGVYCDMGL-LEEAKEEFVIIKETSKV 536

Query: 567 DARRPFCNCLIDICRNRNLNERAHELL----YLGTLYGLYPGLHNKTLD 611
              R +C  L+ +C  R+  + A +LL      G L+ +  G+   T D
Sbjct: 537 PGARVYC-LLLSLCVRRSKWDYATQLLDEMIAAGGLHQVVVGIVRGTYD 584



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 108/236 (45%), Gaps = 15/236 (6%)

Query: 295 FSVLGKMFGESGDYD-GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
           FS++ + F    D+   +R      +    +P   +Y  ++  MG+ G       +F++M
Sbjct: 49  FSLIFREFAARSDWHRALRLFKYMQRQQWCKPTEHIYTIMIGIMGREGLLEKCSEIFEDM 108

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
            E+ +  +    TALI  YG+    + +L L  RM++ +   + I YNT+LN C+  GL 
Sbjct: 109 PENDVKWNVYAFTALINAYGRNGQYEASLHLLARMKKERVEPNLITYNTVLNACSKGGLD 168

Query: 414 EEA-ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
            E    LF  M+  +  +PD  +Y  +L+   S G V+ A  +F+ M+E GV  + +   
Sbjct: 169 WEGLLNLFAQMR-HEGIQPDLITYNTLLSACSSRGLVEQAAMVFKTMNESGVVADAVTYK 227

Query: 473 CLIQCLGKAR---RIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKV 525
            L+     +    R+++L+R      D G  PD      +    SL E   D G V
Sbjct: 228 SLVDTFAGSNQLGRVEELLREME---DEGNSPD------IAGYNSLIEAYADAGNV 274


>gi|147834641|emb|CAN60904.1| hypothetical protein VITISV_016343 [Vitis vinifera]
          Length = 580

 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 92/374 (24%), Positives = 171/374 (45%), Gaps = 43/374 (11%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           +K+  F  +++     P   + YN  +         +   ++ + M    IE D+ TY +
Sbjct: 190 KKAREFIGFMEGLGFKP-NVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGS 248

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           +I+   +    +EA   F++M + GL+P+ VTY+ ++D Y   G +E   S  +  V  G
Sbjct: 249 LISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKG 308

Query: 288 WKPDPIAFSVLGK---MFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344
             P    +++L     M G  G+ D +   ++EM+  G+ P+ + YN L+    + G   
Sbjct: 309 IMPSVSTYNLLVHALFMEGRMGEADDM---IKEMRKKGIIPDAITYNILINGYSRCGNAK 365

Query: 345 LARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
            A  L +EM+  G+ P   T T+LI +  +    K+A +L+E++ +     D I++N ++
Sbjct: 366 RAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMI 425

Query: 405 N-MCADI----------------------------------GLVEEAERLFEDMKLSDYC 429
           +  CA+                                   G VEEA  L ++MK     
Sbjct: 426 DGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRG-I 484

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
           KPD+ SY  +++ YG  G++ +A  + +EM  +G    ++    LI+CL K +  D    
Sbjct: 485 KPDHISYNTLISGYGRRGDIKDAFXVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEE 544

Query: 490 VFGVSIDRGVKPDD 503
           +    +++G+ PDD
Sbjct: 545 LLKEMVNKGISPDD 558



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 126/265 (47%), Gaps = 4/265 (1%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN+ + +L    +    + +  EM    I  D ITY+ +I    RC     A +    M 
Sbjct: 316 YNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKRAFDLHNEML 375

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
             G+ P  VTY++++ V ++  +++E   L+E+ +  G  PD I F+ +      +G+ +
Sbjct: 376 SKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMIDGHCANGNVE 435

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               +L+EM    V P+ V +NTL++   + GK   AR L DEM   G+ PD  +   LI
Sbjct: 436 RAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGIKPDHISYNTLI 495

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
             YG+    KDA  + + M    +    + YN L+         + AE L ++M ++   
Sbjct: 496 SGYGRRGDIKDAFXVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEM-VNKGI 554

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIE 454
            PD+ +Y +++      GNVD  +E
Sbjct: 555 SPDDSTYLSLIE---GMGNVDTLVE 576



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 121/267 (45%), Gaps = 13/267 (4%)

Query: 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVY-AKSGKVEEVLSLYERGVASGWKPDPIAF 295
           LFDE     +R+         V  S + D+   K  K  E +   E     G+KP+ +++
Sbjct: 163 LFDELTLSRDRL--------SVKSSIVFDLLEGKLKKAREFIGFME---GLGFKPNVVSY 211

Query: 296 SVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVE 355
           + +   +   G+ +G R +L  M+  G++P+   Y +L+  M K G+   A  LFD+MVE
Sbjct: 212 NTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVE 271

Query: 356 SGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEE 415
            GL P+  T   LI  Y      + A    + M +         YN L++     G + E
Sbjct: 272 IGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGE 331

Query: 416 AERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLI 475
           A+ + ++M+      PD  +Y  ++N Y   GN   A +L  EM   G+    +  T LI
Sbjct: 332 ADDMIKEMRKKGII-PDAITYNILINGYSRCGNAKRAFDLHNEMLSKGIEPTHVTYTSLI 390

Query: 476 QCLGKARRIDDLVRVFGVSIDRGVKPD 502
             L +  R+ +   +F   +D+GV PD
Sbjct: 391 YVLSRRNRMKEADDLFEKILDQGVSPD 417


>gi|224713524|gb|ACN62069.1| PPR-814c [Zea mays]
          Length = 814

 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 162/357 (45%), Gaps = 36/357 (10%)

Query: 180 QNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFD 239
           Q   P + + YN  + +L   R     E    +MV+  +  +N TY+ +I        + 
Sbjct: 247 QRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWK 306

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEE------------------------ 275
           EA+  F+ M +  ++PD VT S ++    K GK++E                        
Sbjct: 307 EAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIML 366

Query: 276 -----------VLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQ 324
                      +  L++  +  G  PD   F+VL K +   G  D    +  EM+  GV+
Sbjct: 367 NGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVK 426

Query: 325 PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384
           P++V Y T++ A+ + GK   A   F++M++ G+ PD+     LI+ +        A EL
Sbjct: 427 PDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKEL 486

Query: 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYG 444
              +  N   +D + +++++N    +G V +A+ +F D+ ++    PD   Y+ +++ Y 
Sbjct: 487 ISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIF-DLTVNVGLHPDAVVYSMLMDGYC 545

Query: 445 SGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
             G ++ A+ +F+ M   G+  NV+    L+    K  RID+ + +F   + RG+KP
Sbjct: 546 LVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKP 602



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 153/337 (45%), Gaps = 3/337 (0%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  EMV   I  D +TY++++    +    D+A  +  +M    ++P+  TY+ ++  Y+
Sbjct: 241 LFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYS 300

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
            +G+ +E + +++        PD +  S+L     + G     R V   M   G  P++ 
Sbjct: 301 STGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVF 360

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            YN +L      G       LFD M+  G+ PD  T   LIK Y        A+ ++  M
Sbjct: 361 SYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEM 420

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
           R++    D + Y T++     IG +++A   F  M +     PD Y+Y  ++  + + G+
Sbjct: 421 RDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQM-IDQGVAPDKYAYNCLIQGFCTHGS 479

Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGC 508
           +  A EL  E+   G+ ++++  + +I  L K  R+ D   +F ++++ G+ PD  +   
Sbjct: 480 LLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSM 539

Query: 509 LLSVVSLCETSEDVGKVITCLQQAN--PKLVAFLNLI 543
           L+    L    E   +V   +  A   P +V +  L+
Sbjct: 540 LMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLV 576



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 146/294 (49%), Gaps = 2/294 (0%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           FN +  Q + P +   YN  ++           ++L +E+++N + LD + +S+II    
Sbjct: 452 FNQMIDQGVAP-DKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLC 510

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
           +     +A   F+     GL PD V YS ++D Y   GK+E+ L +++  V++G +P+ +
Sbjct: 511 KLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVV 570

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
            +  L   + + G  D    + +EM   G++P+ ++Y+ +++ + +AG+   A+  F EM
Sbjct: 571 VYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKVKFHEM 630

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
            ESG+  D  T   +++   K R   +A+ L++ +R     ++ I  NT+++       V
Sbjct: 631 TESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRV 690

Query: 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
           EEA+ LF  +  S    P   +Y+ M+      G V+ A ++F  M   G   N
Sbjct: 691 EEAKDLFASISRSRLV-PSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPN 743



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/360 (23%), Positives = 156/360 (43%), Gaps = 74/360 (20%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS-LYER 282
           TY+ ++ C  R +  + A+ +F ++ +TGL  + +  + +L+ + ++ + +E L  L  R
Sbjct: 113 TYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEALDILLHR 172

Query: 283 GVASGWKPDPIAFSVLGKMF---GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
               G  PD  ++S+L K     G+SG  D +  ++ E  ++   PN+V YNT+++   K
Sbjct: 173 TPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAV-CSPNVVAYNTVIDGFFK 231

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR---------------------WA 378
            G    A  LF EMV+ G+ PD  T  +++    KAR                     W 
Sbjct: 232 EGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWT 291

Query: 379 --------------KDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFE--- 421
                         K+A+ +++ MR +    D +  + L+      G ++EA  +F+   
Sbjct: 292 YNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMA 351

Query: 422 -------------------------------DMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
                                          D+ L D   PD Y++  ++  Y + G +D
Sbjct: 352 MKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLD 411

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
            A+ +F EM + GV  +V+    +I  L +  ++DD +  F   ID+GV PD     CL+
Sbjct: 412 KAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLI 471



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/327 (23%), Positives = 150/327 (45%), Gaps = 37/327 (11%)

Query: 206 IEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
           +  L + M+ + I  D  T++ +I     C + D+A+  F  M   G+ PD VTY  ++ 
Sbjct: 378 MTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIA 437

Query: 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325
              + GK+++ +  + + +  G  PD  A++ L + F   G     + ++ E+ + G+  
Sbjct: 438 ALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHL 497

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
           ++V +++++  + K G+   A+++FD  V  GL PD    + L+  Y      + AL ++
Sbjct: 498 DIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVF 557

Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN-IYG 444
           + M       + ++Y TL+N    IG ++E   LF +M L    KP    Y+ +++ ++ 
Sbjct: 558 DAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREM-LQRGIKPSTILYSIIIDGLFQ 616

Query: 445 SGGNV----------------------------------DNAIELFEEMSELGVAINVMG 470
           +G  V                                  D AI LF+E+  + V IN++ 
Sbjct: 617 AGRTVPAKVKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIIT 676

Query: 471 CTCLIQCLGKARRIDDLVRVFGVSIDR 497
              +I  + + RR+++   +F  SI R
Sbjct: 677 LNTMIDGMFQTRRVEEAKDLFA-SISR 702



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 89/183 (48%), Gaps = 2/183 (1%)

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382
           + P    Y  L++   +A +P LA + F +++ +GL  +      L++ + +A+   +AL
Sbjct: 107 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEAL 166

Query: 383 E-LWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM-KLSDYCKPDNYSYTAML 440
           + L  R  E     D   Y+ LL    D G   +A+ L   M +    C P+  +Y  ++
Sbjct: 167 DILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVI 226

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
           + +   G+V+ A +LF+EM + G+  +++    ++  L KAR +D         +++ V 
Sbjct: 227 DGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVL 286

Query: 501 PDD 503
           P++
Sbjct: 287 PNN 289



 Score = 45.8 bits (107), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 38/187 (20%), Positives = 85/187 (45%), Gaps = 2/187 (1%)

Query: 187 TIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           TI Y++ +  L + GR      +  +EM  + I +D  TY+ ++    +   FDEAI  F
Sbjct: 604 TILYSIIIDGLFQAGRTVPAKVKF-HEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLF 662

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           + +    +  + +T + ++D   ++ +VEE   L+     S   P  + +S++     + 
Sbjct: 663 KELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPSVVTYSIMITNLIKE 722

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G  +    +   M++ G +PN  + N ++  + K  +   A +   ++ E   + +  T 
Sbjct: 723 GLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTT 782

Query: 366 TALIKIY 372
             L+ ++
Sbjct: 783 MLLVDLF 789


>gi|168019209|ref|XP_001762137.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162686541|gb|EDQ72929.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 513

 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 158/343 (46%), Gaps = 4/343 (1%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           + YN  ++ L     +QL E +  EM +  +     T++ +I    + +   +A   F+ 
Sbjct: 172 VTYNTYLEVLNKSGSWQLAEDVFREMQNRGVPPAVNTFTLMINIYGKAHHSAKAEHLFQS 231

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M K    P   TY+A+++ +A+ G       ++    + G+ PD   ++ L + +   G 
Sbjct: 232 MRKALCPPSLFTYTALINAHAREGNCVRAEEIFAELQSVGFVPDIYTYNALLEAYSRGGH 291

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
             G + V + M   GV+ + V YN L++A G+AG    A++++D M + G  P  K+   
Sbjct: 292 PAGAKEVFETMLEAGVKADHVSYNILIDAFGRAGLISDAQAIYDSMKKVGFKPTMKSHIL 351

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           L+  + KA    DA     R+       D  ++N+LL    + G +++ E L+E M+ S 
Sbjct: 352 LLSAFVKAGRVTDAENFVRRLESMGVEPDTFMFNSLLGAYGNSGRMDKMESLYESMQGS- 410

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
            CKPD  +   ++N+Y  GG ++ A E+F  +   G   +VM  T L+    K +     
Sbjct: 411 VCKPDIITLNTLINVYAQGGYIERAEEIFNSLESKGFTPDVMSWTSLMGAYSKRKLYRKC 470

Query: 488 VRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQ 530
           V V+   +  G  PD      LLS    C   E V +V   ++
Sbjct: 471 VSVYQKMLIAGCIPDRATAKVLLSS---CRGPEQVKEVTDMIE 510



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 141/314 (44%), Gaps = 8/314 (2%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPME---TIFYNVTMKSLRFGRQFQL 205
           P   T    L +LN    WQ +   F  ++++ + P     T+  N+  K+    +   L
Sbjct: 169 PGLVTYNTYLEVLNKSGSWQLAEDVFREMQNRGVPPAVNTFTLMINIYGKAHHSAKAEHL 228

Query: 206 IEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
            + +   +    +     TY+ +I    R      A E F  +   G +PD  TY+A+L+
Sbjct: 229 FQSMRKALCPPSL----FTYTALINAHAREGNCVRAEEIFAELQSVGFVPDIYTYNALLE 284

Query: 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325
            Y++ G       ++E  + +G K D +++++L   FG +G     + +   MK +G +P
Sbjct: 285 AYSRGGHPAGAKEVFETMLEAGVKADHVSYNILIDAFGRAGLISDAQAIYDSMKKVGFKP 344

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
            +  +  LL A  KAG+   A +    +   G+ PD     +L+  YG +        L+
Sbjct: 345 TMKSHILLLSAFVKAGRVTDAENFVRRLESMGVEPDTFMFNSLLGAYGNSGRMDKMESLY 404

Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445
           E M+ +    D I  NTL+N+ A  G +E AE +F  ++   +  PD  S+T+++  Y  
Sbjct: 405 ESMQGSVCKPDIITLNTLINVYAQGGYIERAEEIFNSLESKGFT-PDVMSWTSLMGAYSK 463

Query: 446 GGNVDNAIELFEEM 459
                  + ++++M
Sbjct: 464 RKLYRKCVSVYQKM 477



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/251 (19%), Positives = 101/251 (40%), Gaps = 36/251 (14%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           F  ++S    P +   YN  +++   G      +++   M+   ++ D+++Y+ +I    
Sbjct: 264 FAELQSVGFVP-DIYTYNALLEAYSRGGHPAGAKEVFETMLEAGVKADHVSYNILIDAFG 322

Query: 234 RCNLFDEAIEWFERMYKTGLMP-----------------------------------DEV 258
           R  L  +A   ++ M K G  P                                   D  
Sbjct: 323 RAGLISDAQAIYDSMKKVGFKPTMKSHILLLSAFVKAGRVTDAENFVRRLESMGVEPDTF 382

Query: 259 TYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEM 318
            ++++L  Y  SG+++++ SLYE    S  KPD I  + L  ++ + G  +    +   +
Sbjct: 383 MFNSLLGAYGNSGRMDKMESLYESMQGSVCKPDIITLNTLINVYAQGGYIERAEEIFNSL 442

Query: 319 KSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWA 378
           +S G  P+++ + +L+ A  K        S++ +M+ +G  PD  T   L+         
Sbjct: 443 ESKGFTPDVMSWTSLMGAYSKRKLYRKCVSVYQKMLIAGCIPDRATAKVLLSSCRGPEQV 502

Query: 379 KDALELWERMR 389
           K+  ++ E  R
Sbjct: 503 KEVTDMIETQR 513


>gi|413950073|gb|AFW82722.1| hypothetical protein ZEAMMB73_503137 [Zea mays]
          Length = 620

 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 153/313 (48%), Gaps = 1/313 (0%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN  + +L    + Q +  + ++MV   ++ + ITY+TI+    +      A     RM 
Sbjct: 204 YNAIVLALCREFRMQEVFSVVSDMVGRGLQPNVITYTTIVDAFCKAGELRMACAILARMV 263

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
            TG  P+ VT++A++      G+V + L ++   VA GW P  +++++L +     GD  
Sbjct: 264 ITGCTPNVVTFTALVRGLFDDGRVHDALDMWRWMVAEGWAPSTVSYNILIRGLCSVGDLK 323

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
           G   +L  M+  G  PN+  Y+TL++   KAG  G A S++++M  SG  P+    T ++
Sbjct: 324 GASSILNSMEQHGCFPNVRTYSTLIDGFSKAGDLGGAISIWNDMSRSGCKPNVVVYTNMV 383

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
            ++ K      A  L ++M     P + + +NTL+    D   V  A  +F +M+    C
Sbjct: 384 DVFCKKLMFNQAKSLIDKMLLENCPPNTVTFNTLIRSLCDCRRVGRALGVFHEMRRHG-C 442

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
            P+  +Y  +++     GN  +A+ +  EM   G+ ++++    ++  L + R   + + 
Sbjct: 443 VPNGRTYNELIHGLFREGNCGDALHMVTEMQSHGIELSLVTYNTVVSGLCQTRMSREAMV 502

Query: 490 VFGVSIDRGVKPD 502
             G  I +G++P+
Sbjct: 503 FVGKMIVQGIQPN 515



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 113/234 (48%), Gaps = 6/234 (2%)

Query: 236 NLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAF 295
           N    A +  + M + G  PD+VTY+ I+ V  K  +++E        V +   P   ++
Sbjct: 150 NRVGAARKMLDEMARKGCPPDDVTYATIVSVLCKLDRLDEATE-----VLAAMPPVAASY 204

Query: 296 SVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVE 355
           + +            +  V+ +M   G+QPN++ Y T+++A  KAG+  +A ++   MV 
Sbjct: 205 NAIVLALCREFRMQEVFSVVSDMVGRGLQPNVITYTTIVDAFCKAGELRMACAILARMVI 264

Query: 356 SGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEE 415
           +G TP+  T TAL++         DAL++W  M    W    + YN L+     +G ++ 
Sbjct: 265 TGCTPNVVTFTALVRGLFDDGRVHDALDMWRWMVAEGWAPSTVSYNILIRGLCSVGDLKG 324

Query: 416 AERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVM 469
           A  +   M+    C P+  +Y+ +++ +   G++  AI ++ +MS  G   NV+
Sbjct: 325 ASSILNSME-QHGCFPNVRTYSTLIDGFSKAGDLGGAISIWNDMSRSGCKPNVV 377



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 131/298 (43%), Gaps = 6/298 (2%)

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
            ++ +EM       D++TY+TI++   + +  DEA E    M      P   +Y+AI+  
Sbjct: 156 RKMLDEMARKGCPPDDVTYATIVSVLCKLDRLDEATEVLAAMP-----PVAASYNAIVLA 210

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
             +  +++EV S+    V  G +P+ I ++ +   F ++G+      +L  M   G  PN
Sbjct: 211 LCREFRMQEVFSVVSDMVGRGLQPNVITYTTIVDAFCKAGELRMACAILARMVITGCTPN 270

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
           +V +  L+  +   G+   A  ++  MV  G  P   +   LI+        K A  +  
Sbjct: 271 VVTFTALVRGLFDDGRVHDALDMWRWMVAEGWAPSTVSYNILIRGLCSVGDLKGASSILN 330

Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
            M ++    +   Y+TL++  +  G +  A  ++ DM  S  CKP+   YT M++++   
Sbjct: 331 SMEQHGCFPNVRTYSTLIDGFSKAGDLGGAISIWNDMSRSG-CKPNVVVYTNMVDVFCKK 389

Query: 447 GNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR 504
              + A  L ++M       N +    LI+ L   RR+   + VF      G  P+ R
Sbjct: 390 LMFNQAKSLIDKMLLENCPPNTVTFNTLIRSLCDCRRVGRALGVFHEMRRHGCVPNGR 447



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/345 (19%), Positives = 144/345 (41%), Gaps = 48/345 (13%)

Query: 160 ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIE 219
           + ++L  W+       W+ ++   P  T+ YN+ ++ L                      
Sbjct: 287 VHDALDMWR-------WMVAEGWAP-STVSYNILIRGL---------------------- 316

Query: 220 LDNITYSTIITCAKRCNLFD--EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL 277
                          C++ D   A      M + G  P+  TYS ++D ++K+G +   +
Sbjct: 317 ---------------CSVGDLKGASSILNSMEQHGCFPNVRTYSTLIDGFSKAGDLGGAI 361

Query: 278 SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
           S++     SG KP+ + ++ +  +F +   ++  + ++ +M      PN V +NTL+ ++
Sbjct: 362 SIWNDMSRSGCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENCPPNTVTFNTLIRSL 421

Query: 338 GKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDF 397
               + G A  +F EM   G  P+ +T   LI    +     DAL +   M+ +   +  
Sbjct: 422 CDCRRVGRALGVFHEMRRHGCVPNGRTYNELIHGLFREGNCGDALHMVTEMQSHGIELSL 481

Query: 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE 457
           + YNT+++      +  EA      M +    +P+ ++++A+++ Y   G V  A  +  
Sbjct: 482 VTYNTVVSGLCQTRMSREAMVFVGKMIVQGI-QPNAFTFSAIIHAYCKEGEVRMAAWMLG 540

Query: 458 EMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            M+ +    N++  T L+  L    ++ D +      +  G+ P+
Sbjct: 541 AMNVVNCHRNILVYTILMAELCNQDKLVDAMTYLLKMLYEGIYPN 585



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 66/131 (50%), Gaps = 2/131 (1%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
            +  EM S+ IEL  +TY+T+++   +  +  EA+ +  +M   G+ P+  T+SAI+  Y
Sbjct: 467 HMVTEMQSHGIELSLVTYNTVVSGLCQTRMSREAMVFVGKMIVQGIQPNAFTFSAIIHAY 526

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVL-GKMFGESGDYDGIRYVLQEMKSLGVQPN 326
            K G+V     +           + + +++L  ++  +    D + Y+L+ +   G+ PN
Sbjct: 527 CKEGEVRMAAWMLGAMNVVNCHRNILVYTILMAELCNQDKLVDAMTYLLKMLYE-GIYPN 585

Query: 327 LVVYNTLLEAM 337
            V +N L+  +
Sbjct: 586 TVTWNVLVRGV 596



 Score = 47.8 bits (112), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 52/249 (20%), Positives = 90/249 (36%), Gaps = 54/249 (21%)

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP---------------- 343
           +    +GD DG++  LQEM+  GV          + A  +AG P                
Sbjct: 63  RRLAAAGDVDGVQLALQEMRLRGVPCTEGALVAAVGAFARAGAPDRALKTFYRAVHDLGC 122

Query: 344 ------------------------------GLARSLFDEMVESGLTPDEKTLTALIKIYG 373
                                         G AR + DEM   G  PD+ T   ++ +  
Sbjct: 123 ARPHRAAALQPPHRRAAAGRTWALCQNNRVGAARKMLDEMARKGCPPDDVTYATIVSVLC 182

Query: 374 KARWAKDALELWERMRENKWPMDFILYNTL-LNMCADIGLVEEAERLFEDMKLSDYCKPD 432
           K     +A E+   M     P     YN + L +C +  + +E   +  DM +    +P+
Sbjct: 183 KLDRLDEATEVLAAM-----PPVAASYNAIVLALCREFRM-QEVFSVVSDM-VGRGLQPN 235

Query: 433 NYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFG 492
             +YT +++ +   G +  A  +   M   G   NV+  T L++ L    R+ D + ++ 
Sbjct: 236 VITYTTIVDAFCKAGELRMACAILARMVITGCTPNVVTFTALVRGLFDDGRVHDALDMWR 295

Query: 493 VSIDRGVKP 501
             +  G  P
Sbjct: 296 WMVAEGWAP 304


>gi|302776656|ref|XP_002971480.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
 gi|300160612|gb|EFJ27229.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
          Length = 631

 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 91/302 (30%), Positives = 140/302 (46%), Gaps = 1/302 (0%)

Query: 201 RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTY 260
           +Q +    L  E     + LD  TYS ++    +     +A+E F  M K G MPD V Y
Sbjct: 314 KQLEEALTLFQEAEQGGVVLDVFTYSYLMDAFGKAGRAAKALEVFYNMQKAGCMPDTVVY 373

Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
           + ++    K GKV+E L L E     G  PD   ++++  +    G Y+        MK 
Sbjct: 374 NVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKR 433

Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380
               P++V YNTLL  + K  +   A  LFDEM  +   PD  T   LI    KA   +D
Sbjct: 434 RKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRMED 493

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
           ALE   R+ +     +  +YN L++     G V++   LF+DM +   C PD+ +YT ++
Sbjct: 494 ALEQSARLVKMGHAPNSYIYNALISGFCRSGQVDKGYELFQDM-IECSCFPDSITYTILV 552

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
             +   G+   A+EL +EM   G    +     LI+ L  A +++D   +F   I +G  
Sbjct: 553 LGFSRRGHTSMAMELLQEMVREGHTPALATYNVLIRSLSMAGQVEDAYTLFKEMIAKGFN 612

Query: 501 PD 502
           PD
Sbjct: 613 PD 614



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 151/312 (48%), Gaps = 8/312 (2%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKS-LRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           F  +   +   +  + YN  ++  +R GR  +  +   + M    +  D  TY+ +I   
Sbjct: 253 FMELARHDGCALSAVNYNFIIQGFIRCGRLAEATQLFESTMTKESVP-DVFTYNLLIALC 311

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
           K   L +EA+  F+   + G++ D  TYS ++D + K+G+  + L ++     +G  PD 
Sbjct: 312 KSKQL-EEALTLFQEAEQGGVVLDVFTYSYLMDAFGKAGRAAKALEVFYNMQKAGCMPDT 370

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           + ++VL    G+ G  D    +L++M   G+ P+   YN +++ +   G+   A S F  
Sbjct: 371 VVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGM 430

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M     +PD  T   L+    K R   +A +L++ M+ NK   D   + TL++  A  G 
Sbjct: 431 MKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGR 490

Query: 413 VEEA-ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC 471
           +E+A E+    +K+     P++Y Y A+++ +   G VD   ELF++M E     + +  
Sbjct: 491 MEDALEQSARLVKMGH--APNSYIYNALISGFCRSGQVDKGYELFQDMIECSCFPDSITY 548

Query: 472 TCLIQCLGKARR 483
           T L+  LG +RR
Sbjct: 549 TILV--LGFSRR 558



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 111/221 (50%), Gaps = 1/221 (0%)

Query: 148 IPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIE 207
           +P   T    + +L+S   ++K+Y FF  +K +   P + + YN  +  L+  R+     
Sbjct: 402 MPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSP-DVVTYNTLLNGLKKLRRTDEAC 460

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
            L +EM +N+   D  T+ T+I    +    ++A+E   R+ K G  P+   Y+A++  +
Sbjct: 461 DLFDEMQANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGHAPNSYIYNALISGF 520

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            +SG+V++   L++  +     PD I +++L   F   G       +LQEM   G  P L
Sbjct: 521 CRSGQVDKGYELFQDMIECSCFPDSITYTILVLGFSRRGHTSMAMELLQEMVREGHTPAL 580

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
             YN L+ ++  AG+   A +LF EM+  G  PD +T +AL
Sbjct: 581 ATYNVLIRSLSMAGQVEDAYTLFKEMIAKGFNPDMQTYSAL 621



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 107/446 (23%), Positives = 189/446 (42%), Gaps = 22/446 (4%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
            EM+   ++ D    +T+I C  R  +  +A      M       D  TY  +++ + ++
Sbjct: 185 QEMLGAGLKADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHACARDAFTYGILVNAHCRA 244

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
           G++ EV S  E     G     + ++ + + F   G       + +   +    P++  Y
Sbjct: 245 GQMHEVASFMELARHDGCALSAVNYNFIIQGFIRCGRLAEATQLFESTMTKESVPDVFTY 304

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
           N LL A+ K+ +   A +LF E  + G+  D  T + L+  +GKA  A  ALE++  M++
Sbjct: 305 N-LLIALCKSKQLEEALTLFQEAEQGGVVLDVFTYSYLMDAFGKAGRAAKALEVFYNMQK 363

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
                D ++YN L++     G V+EA  L EDM       PD  +Y  ++++  S G  +
Sbjct: 364 AGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGI-MPDCRTYNIVIDVLSSCGRYE 422

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
            A   F  M     + +V+    L+  L K RR D+   +F         PD      L 
Sbjct: 423 KAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPD------LT 476

Query: 511 SVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEF---RNVIKDTEVD 567
           +  +L +T    G++   L+Q + +LV   +    NS  +  +   F     V K  E+ 
Sbjct: 477 TFGTLIDTLAKAGRMEDALEQ-SARLVKMGH--APNSYIYNALISGFCRSGQVDKGYELF 533

Query: 568 ARRPFCNCLIDICRNRNL----NERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLSVG 623
                C+C  D      L    + R H  + +  L  +    H   L  +++ +RSLS+ 
Sbjct: 534 QDMIECSCFPDSITYTILVLGFSRRGHTSMAMELLQEMVREGHTPALATYNVLIRSLSM- 592

Query: 624 AAQTALEEWMWTLAKIVLREEVLPQL 649
           A Q    E  +TL K ++ +   P +
Sbjct: 593 AGQV---EDAYTLFKEMIAKGFNPDM 615



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 96/217 (44%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN+ +  L    +++        M   +   D +TY+T++   K+    DEA + F+ M 
Sbjct: 408 YNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQ 467

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
               MPD  T+  ++D  AK+G++E+ L    R V  G  P+   ++ L   F  SG  D
Sbjct: 468 ANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGHAPNSYIYNALISGFCRSGQVD 527

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               + Q+M      P+ + Y  L+    + G   +A  L  EMV  G TP   T   LI
Sbjct: 528 KGYELFQDMIECSCFPDSITYTILVLGFSRRGHTSMAMELLQEMVREGHTPALATYNVLI 587

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
           +    A   +DA  L++ M    +  D   Y+ L N+
Sbjct: 588 RSLSMAGQVEDAYTLFKEMIAKGFNPDMQTYSALPNL 624



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 128/317 (40%), Gaps = 35/317 (11%)

Query: 239 DEAIEWFERMYKT-GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG-WKPDPIAFS 296
           ++A+  F+ M +T    PD V Y+ ++  Y K+G  +  L ++ R    G  KP+ ++F 
Sbjct: 106 EQAMTLFDDMRETCDCAPDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFD 165

Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356
            L     +         V QEM   G++ ++ V NTL+    + G    AR L   M   
Sbjct: 166 TLVIFLCKMSRATDALAVFQEMLGAGLKADVNVCNTLIHCTCRLGMLRQARRLLHHMTAH 225

Query: 357 GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEA 416
               D  T   L+  + +A    +     E  R +   +  + YN ++      G + EA
Sbjct: 226 ACARDAFTYGILVNAHCRAGQMHEVASFMELARHDGCALSAVNYNFIIQGFIRCGRLAEA 285

Query: 417 ERLFEDMK-------------LSDYCKP--------------------DNYSYTAMLNIY 443
            +LFE                L   CK                     D ++Y+ +++ +
Sbjct: 286 TQLFESTMTKESVPDVFTYNLLIALCKSKQLEEALTLFQEAEQGGVVLDVFTYSYLMDAF 345

Query: 444 GSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
           G  G    A+E+F  M + G   + +    LI CLGK  ++D+ + +      +G+ PD 
Sbjct: 346 GKAGRAAKALEVFYNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDC 405

Query: 504 RLCGCLLSVVSLCETSE 520
           R    ++ V+S C   E
Sbjct: 406 RTYNIVIDVLSSCGRYE 422



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 76/171 (44%), Gaps = 8/171 (4%)

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT-PDEKTLTALIKIYGKARWAKD 380
           GV  + V     ++A G+AG    A  + D+M       PD    TA +    + R  + 
Sbjct: 48  GVGLSEVTCTECIQAFGRAGDLDAAMGMLDDMRRGNFCQPDTVAFTAAMHWLCEVRRVEQ 107

Query: 381 ALELWERMREN-KWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAM 439
           A+ L++ MRE      D + YNTL+      G  + A  +F  +K    CKP+  S+  +
Sbjct: 108 AMTLFDDMRETCDCAPDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTL 167

Query: 440 LNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC------LGKARRI 484
           +          +A+ +F+EM   G+  +V  C  LI C      L +ARR+
Sbjct: 168 VIFLCKMSRATDALAVFQEMLGAGLKADVNVCNTLIHCTCRLGMLRQARRL 218



 Score = 62.4 bits (150), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 76/158 (48%), Gaps = 2/158 (1%)

Query: 355 ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPM-DFILYNTLLNMCADIGLV 413
           + G+   E T T  I+ +G+A     A+ + + MR   +   D + +   ++   ++  V
Sbjct: 46  QKGVGLSEVTCTECIQAFGRAGDLDAAMGMLDDMRRGNFCQPDTVAFTAAMHWLCEVRRV 105

Query: 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG-VAINVMGCT 472
           E+A  LF+DM+ +  C PD  +Y  ++  Y   G+ D A+++F  + + G    N +   
Sbjct: 106 EQAMTLFDDMRETCDCAPDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFD 165

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
            L+  L K  R  D + VF   +  G+K D  +C  L+
Sbjct: 166 TLVIFLCKMSRATDALAVFQEMLGAGLKADVNVCNTLI 203



 Score = 44.3 bits (103), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 58/117 (49%)

Query: 345 LARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
           +A + +  ++++GL  D  T TA++K   K    +   EL   +R+    +  +     +
Sbjct: 1   MALATYKHLLKAGLPVDAHTATAMVKEVCKLGRTELLAELLAELRQKGVGLSEVTCTECI 60

Query: 405 NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461
                 G ++ A  + +DM+  ++C+PD  ++TA ++       V+ A+ LF++M E
Sbjct: 61  QAFGRAGDLDAAMGMLDDMRRGNFCQPDTVAFTAAMHWLCEVRRVEQAMTLFDDMRE 117


>gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g05670, mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 87/323 (26%), Positives = 155/323 (47%), Gaps = 2/323 (0%)

Query: 179 SQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLF 238
           SQ + P   ++  +     + G   +   +  +EM+S +I  D ITY+T+I    +    
Sbjct: 356 SQKIIPDNVVYTTLIHGFFKLG-HVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKV 414

Query: 239 DEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
            E    F  M   GL PDEVTY+ ++DVY K+G++    SL+   V  G  P+ + +  L
Sbjct: 415 IEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGAL 474

Query: 299 GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
                + G+ D    +L EM+  G+Q N+ +YN+++  + KAG    A  L  EM  +G+
Sbjct: 475 IDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGI 534

Query: 359 TPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAER 418
            PD  T T +I  Y +      A +L + M +       + +N L+N    +G++E+ +R
Sbjct: 535 DPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDR 594

Query: 419 LFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL 478
           L   M L     PD  +Y  ++  +    +++   ++++ M   GVA +      LI+  
Sbjct: 595 LLGWM-LEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGH 653

Query: 479 GKARRIDDLVRVFGVSIDRGVKP 501
            KAR + +   ++   I++G  P
Sbjct: 654 CKARNLKEAWFLYKEMIEKGYVP 676



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/295 (27%), Positives = 153/295 (51%), Gaps = 1/295 (0%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           +L ++M    ++ +  TY++II    +     EA +    M    ++PD V Y+ ++  +
Sbjct: 314 KLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGF 373

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            K G V      ++  ++    PD I ++ L + FG+ G     + +  EM S G++P+ 
Sbjct: 374 FKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDE 433

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
           V Y TL++   KAG+   A SL +EMV+ G+TP+  T  ALI    K      A EL + 
Sbjct: 434 VTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDE 493

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           MR+    ++  +YN+++N     G +E+A +L ++M+++    PD  +YT +++ Y   G
Sbjct: 494 MRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAG-IDPDAITYTTVIDAYCRLG 552

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           ++D A +L +EM + G+   V+    L+        ++D  R+ G  +++G+ PD
Sbjct: 553 DIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPD 607



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 101/207 (48%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           +L  EM    I+ D ITY+T+I    R    D+A +  + M   GL P  VT++ +++ +
Sbjct: 524 KLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGF 583

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
              G +E+   L    +  G  PD I ++ L K        +    + + M++ GV P+ 
Sbjct: 584 CMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDS 643

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
             YN L++   KA     A  L+ EM+E G  P   +  ALIK + K R   +A EL+E 
Sbjct: 644 NTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKRKFXEARELFEE 703

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVE 414
           MR +    D  +YN  ++MC + G VE
Sbjct: 704 MRGHGLVADGEIYNFFVDMCYEEGDVE 730



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 117/254 (46%), Gaps = 1/254 (0%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           +L +EM    ++L+   Y++++    +    ++AI+  + M   G+ PD +TY+ ++D Y
Sbjct: 489 ELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAY 548

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            + G +++   L +  +  G +P  + F+VL   F   G  +    +L  M   G+ P+ 
Sbjct: 549 CRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDA 608

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
           + YNTL++             ++  M   G+ PD  T   LIK + KAR  K+A  L++ 
Sbjct: 609 ITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKE 668

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           M E  +      YN L+          EA  LFE+M+       D   Y   +++    G
Sbjct: 669 MIEKGYVPTVTSYNALIKRFYKKRKFXEARELFEEMRGHGLV-ADGEIYNFFVDMCYEEG 727

Query: 448 NVDNAIELFEEMSE 461
           +V+  + L +E  E
Sbjct: 728 DVEITLNLCDEAIE 741



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 116/268 (43%), Gaps = 36/268 (13%)

Query: 288 WKPDPIAFSVLGKMFGESG---------------------------------DYDGIRYV 314
           W P+PIAF +  ++  E G                                 + +GI   
Sbjct: 186 WGPNPIAFDIFFQVLVEIGHLSEARKLLDKLLSYGLVVTVDSCNAFLSRIANNSEGIEMA 245

Query: 315 LQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK 374
           ++     G+  N   YN ++ ++ + GK   A  L  +M     TPD  + + +I  Y  
Sbjct: 246 IKVFCEYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCH 305

Query: 375 ARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNY 434
               K AL+L + M+      +   YN+++ +   IG   EAE++  +M +S    PDN 
Sbjct: 306 LGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREM-MSQKIIPDNV 364

Query: 435 SYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVS 494
            YT +++ +   G+V  A + F+EM    ++ + +  T LIQ  G+  ++ +   +F   
Sbjct: 365 VYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEM 424

Query: 495 IDRGVKPDDRLCGCLLSVVSLCETSEDV 522
           I RG+KPD+     L+ V   C+  E V
Sbjct: 425 ISRGLKPDEVTYTTLIDV--YCKAGEMV 450



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 89/416 (21%), Positives = 176/416 (42%), Gaps = 56/416 (13%)

Query: 203 FQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLF-------DEAIEWFERMY-KTGLM 254
           FQ++ ++ +   + ++ LD +    ++     CN F        E IE   +++ + G+ 
Sbjct: 197 FQVLVEIGHLSEARKL-LDKLLSYGLVVTVDSCNAFLSRIANNSEGIEMAIKVFCEYGIS 255

Query: 255 PDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYV 314
            +  +Y+ I+    + GKV+E   L  +       PD +++S +   +   G+      +
Sbjct: 256 WNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKALKL 315

Query: 315 LQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK 374
           + +M+  G++PN   YN+++  + K GK   A  +  EM+   + PD             
Sbjct: 316 MDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDN------------ 363

Query: 375 ARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNY 434
                                  ++Y TL++    +G V  A + F++M LS    PD  
Sbjct: 364 -----------------------VVYTTLIHGFFKLGHVRTANKWFDEM-LSKKISPDYI 399

Query: 435 SYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVS 494
           +YT ++  +G GG V     LF EM   G+  + +  T LI    KA  + +   +    
Sbjct: 400 TYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEM 459

Query: 495 IDRGVKPDDRLCGCLLSVVSLCETSE--DVGKVITCLQQANPKL-VAFLNLIEDNSTGFE 551
           +  G+ P+    G L+    LC+  E     +++  +++   +L V   N + +      
Sbjct: 460 VQMGMTPNIVTYGALID--GLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAG 517

Query: 552 NIKEEFRNVIKDTEVDARRP----FCNCLIDICRNRNLNERAHELLYLGTLYGLYP 603
           NI++  + ++K+ EV    P    +   +   CR  ++ ++AH+LL      GL P
Sbjct: 518 NIEQAIK-LMKEMEVAGIDPDAITYTTVIDAYCRLGDI-DKAHKLLQEMLDRGLQP 571



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 81/172 (47%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
            + +NV M         +  ++L   M+   I  D ITY+T++      N  +   + ++
Sbjct: 573 VVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYK 632

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
           RM   G+ PD  TY+ ++  + K+  ++E   LY+  +  G+ P   +++ L K F +  
Sbjct: 633 RMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKR 692

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
            +   R + +EM+  G+  +  +YN  ++   + G   +  +L DE +E  L
Sbjct: 693 KFXEARELFEEMRGHGLVADGEIYNFFVDMCYEEGDVEITLNLCDEAIEKCL 744


>gi|413950074|gb|AFW82723.1| hypothetical protein ZEAMMB73_503137 [Zea mays]
          Length = 643

 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 153/313 (48%), Gaps = 1/313 (0%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN  + +L    + Q +  + ++MV   ++ + ITY+TI+    +      A     RM 
Sbjct: 227 YNAIVLALCREFRMQEVFSVVSDMVGRGLQPNVITYTTIVDAFCKAGELRMACAILARMV 286

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
            TG  P+ VT++A++      G+V + L ++   VA GW P  +++++L +     GD  
Sbjct: 287 ITGCTPNVVTFTALVRGLFDDGRVHDALDMWRWMVAEGWAPSTVSYNILIRGLCSVGDLK 346

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
           G   +L  M+  G  PN+  Y+TL++   KAG  G A S++++M  SG  P+    T ++
Sbjct: 347 GASSILNSMEQHGCFPNVRTYSTLIDGFSKAGDLGGAISIWNDMSRSGCKPNVVVYTNMV 406

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
            ++ K      A  L ++M     P + + +NTL+    D   V  A  +F +M+    C
Sbjct: 407 DVFCKKLMFNQAKSLIDKMLLENCPPNTVTFNTLIRSLCDCRRVGRALGVFHEMRRHG-C 465

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
            P+  +Y  +++     GN  +A+ +  EM   G+ ++++    ++  L + R   + + 
Sbjct: 466 VPNGRTYNELIHGLFREGNCGDALHMVTEMQSHGIELSLVTYNTVVSGLCQTRMSREAMV 525

Query: 490 VFGVSIDRGVKPD 502
             G  I +G++P+
Sbjct: 526 FVGKMIVQGIQPN 538



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 124/259 (47%), Gaps = 6/259 (2%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
           + M  + +  +  TY+ ++    + N    A +  + M + G  PD+VTY+ I+ V  K 
Sbjct: 148 DNMRKDGVHPNVFTYNLLVRALCQNNRVGAARKMLDEMARKGCPPDDVTYATIVSVLCKL 207

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
            +++E        V +   P   +++ +            +  V+ +M   G+QPN++ Y
Sbjct: 208 DRLDEATE-----VLAAMPPVAASYNAIVLALCREFRMQEVFSVVSDMVGRGLQPNVITY 262

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
            T+++A  KAG+  +A ++   MV +G TP+  T TAL++         DAL++W  M  
Sbjct: 263 TTIVDAFCKAGELRMACAILARMVITGCTPNVVTFTALVRGLFDDGRVHDALDMWRWMVA 322

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
             W    + YN L+     +G ++ A  +   M+    C P+  +Y+ +++ +   G++ 
Sbjct: 323 EGWAPSTVSYNILIRGLCSVGDLKGASSILNSME-QHGCFPNVRTYSTLIDGFSKAGDLG 381

Query: 451 NAIELFEEMSELGVAINVM 469
            AI ++ +MS  G   NV+
Sbjct: 382 GAISIWNDMSRSGCKPNVV 400



 Score = 92.4 bits (228), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 74/315 (23%), Positives = 139/315 (44%), Gaps = 6/315 (1%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN+ +++L    +     ++ +EM       D++TY+TI++   + +  DEA E    M 
Sbjct: 162 YNLLVRALCQNNRVGAARKMLDEMARKGCPPDDVTYATIVSVLCKLDRLDEATEVLAAMP 221

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
                P   +Y+AI+    +  +++EV S+    V  G +P+ I ++ +   F ++G+  
Sbjct: 222 -----PVAASYNAIVLALCREFRMQEVFSVVSDMVGRGLQPNVITYTTIVDAFCKAGELR 276

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               +L  M   G  PN+V +  L+  +   G+   A  ++  MV  G  P   +   LI
Sbjct: 277 MACAILARMVITGCTPNVVTFTALVRGLFDDGRVHDALDMWRWMVAEGWAPSTVSYNILI 336

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
           +        K A  +   M ++    +   Y+TL++  +  G +  A  ++ DM  S  C
Sbjct: 337 RGLCSVGDLKGASSILNSMEQHGCFPNVRTYSTLIDGFSKAGDLGGAISIWNDMSRSG-C 395

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
           KP+   YT M++++      + A  L ++M       N +    LI+ L   RR+   + 
Sbjct: 396 KPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENCPPNTVTFNTLIRSLCDCRRVGRALG 455

Query: 490 VFGVSIDRGVKPDDR 504
           VF      G  P+ R
Sbjct: 456 VFHEMRRHGCVPNGR 470



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/345 (19%), Positives = 144/345 (41%), Gaps = 48/345 (13%)

Query: 160 ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIE 219
           + ++L  W+       W+ ++   P  T+ YN+ ++ L                      
Sbjct: 310 VHDALDMWR-------WMVAEGWAP-STVSYNILIRGL---------------------- 339

Query: 220 LDNITYSTIITCAKRCNLFD--EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL 277
                          C++ D   A      M + G  P+  TYS ++D ++K+G +   +
Sbjct: 340 ---------------CSVGDLKGASSILNSMEQHGCFPNVRTYSTLIDGFSKAGDLGGAI 384

Query: 278 SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
           S++     SG KP+ + ++ +  +F +   ++  + ++ +M      PN V +NTL+ ++
Sbjct: 385 SIWNDMSRSGCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENCPPNTVTFNTLIRSL 444

Query: 338 GKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDF 397
               + G A  +F EM   G  P+ +T   LI    +     DAL +   M+ +   +  
Sbjct: 445 CDCRRVGRALGVFHEMRRHGCVPNGRTYNELIHGLFREGNCGDALHMVTEMQSHGIELSL 504

Query: 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE 457
           + YNT+++      +  EA      M +    +P+ ++++A+++ Y   G V  A  +  
Sbjct: 505 VTYNTVVSGLCQTRMSREAMVFVGKMIVQGI-QPNAFTFSAIIHAYCKEGEVRMAAWMLG 563

Query: 458 EMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            M+ +    N++  T L+  L    ++ D +      +  G+ P+
Sbjct: 564 AMNVVNCHRNILVYTILMAELCNQDKLVDAMTYLLKMLYEGIYPN 608



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 85/189 (44%), Gaps = 8/189 (4%)

Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYG 373
           V   M+  GV PN+  YN L+ A+ +  + G AR + DEM   G  PD+ T   ++ +  
Sbjct: 146 VYDNMRKDGVHPNVFTYNLLVRALCQNNRVGAARKMLDEMARKGCPPDDVTYATIVSVLC 205

Query: 374 KARWAKDALELWERMRENKWPMDFILYNTL-LNMCADIGLVEEAERLFEDMKLSDYCKPD 432
           K     +A E+   M     P     YN + L +C +  + +E   +  DM +    +P+
Sbjct: 206 KLDRLDEATEVLAAM-----PPVAASYNAIVLALCREFRM-QEVFSVVSDM-VGRGLQPN 258

Query: 433 NYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFG 492
             +YT +++ +   G +  A  +   M   G   NV+  T L++ L    R+ D + ++ 
Sbjct: 259 VITYTTIVDAFCKAGELRMACAILARMVITGCTPNVVTFTALVRGLFDDGRVHDALDMWR 318

Query: 493 VSIDRGVKP 501
             +  G  P
Sbjct: 319 WMVAEGWAP 327



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 66/131 (50%), Gaps = 2/131 (1%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
            +  EM S+ IEL  +TY+T+++   +  +  EA+ +  +M   G+ P+  T+SAI+  Y
Sbjct: 490 HMVTEMQSHGIELSLVTYNTVVSGLCQTRMSREAMVFVGKMIVQGIQPNAFTFSAIIHAY 549

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVL-GKMFGESGDYDGIRYVLQEMKSLGVQPN 326
            K G+V     +           + + +++L  ++  +    D + Y+L+ +   G+ PN
Sbjct: 550 CKEGEVRMAAWMLGAMNVVNCHRNILVYTILMAELCNQDKLVDAMTYLLKMLYE-GIYPN 608

Query: 327 LVVYNTLLEAM 337
            V +N L+  +
Sbjct: 609 TVTWNVLVRGV 619


>gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  132 bits (331), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 87/323 (26%), Positives = 155/323 (47%), Gaps = 2/323 (0%)

Query: 179 SQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLF 238
           SQ + P   ++  +     + G   +   +  +EM+S +I  D ITY+T+I    +    
Sbjct: 356 SQKIIPDNVVYTTLIHGFFKLG-HVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKV 414

Query: 239 DEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
            E    F  M   GL PDEVTY+ ++DVY K+G++    SL+   V  G  P+ + +  L
Sbjct: 415 IEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGAL 474

Query: 299 GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
                + G+ D    +L EM+  G+Q N+ +YN+++  + KAG    A  L  EM  +G+
Sbjct: 475 IDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGI 534

Query: 359 TPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAER 418
            PD  T T +I  Y +      A +L + M +       + +N L+N    +G++E+ +R
Sbjct: 535 DPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDR 594

Query: 419 LFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL 478
           L   M L     PD  +Y  ++  +    +++   ++++ M   GVA +      LI+  
Sbjct: 595 LLGWM-LEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGH 653

Query: 479 GKARRIDDLVRVFGVSIDRGVKP 501
            KAR + +   ++   I++G  P
Sbjct: 654 CKARNLKEAWFLYKEMIEKGYVP 676



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/295 (27%), Positives = 153/295 (51%), Gaps = 1/295 (0%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           +L ++M    ++ +  TY++II    +     EA +    M    ++PD V Y+ ++  +
Sbjct: 314 KLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGF 373

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            K G V      ++  ++    PD I ++ L + FG+ G     + +  EM S G++P+ 
Sbjct: 374 FKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDE 433

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
           V Y TL++   KAG+   A SL +EMV+ G+TP+  T  ALI    K      A EL + 
Sbjct: 434 VTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDE 493

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           MR+    ++  +YN+++N     G +E+A +L ++M+++    PD  +YT +++ Y   G
Sbjct: 494 MRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAG-IDPDAITYTTVIDAYCRLG 552

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           ++D A +L +EM + G+   V+    L+        ++D  R+ G  +++G+ PD
Sbjct: 553 DIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPD 607



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 101/207 (48%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           +L  EM    I+ D ITY+T+I    R    D+A +  + M   GL P  VT++ +++ +
Sbjct: 524 KLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGF 583

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
              G +E+   L    +  G  PD I ++ L K        +    + + M++ GV P+ 
Sbjct: 584 CMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDS 643

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
             YN L++   KA     A  L+ EM+E G  P   +  ALIK + K +   +A EL+E 
Sbjct: 644 NTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKKKILEARELFEE 703

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVE 414
           MR +    D  +YN  ++MC + G VE
Sbjct: 704 MRGHGLVADGEIYNFFVDMCYEEGDVE 730



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 118/254 (46%), Gaps = 1/254 (0%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           +L +EM    ++L+   Y++++    +    ++AI+  + M   G+ PD +TY+ ++D Y
Sbjct: 489 ELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAY 548

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            + G +++   L +  +  G +P  + F+VL   F   G  +    +L  M   G+ P+ 
Sbjct: 549 CRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDA 608

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
           + YNTL++             ++  M   G+ PD  T   LIK + KAR  K+A  L++ 
Sbjct: 609 ITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKE 668

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           M E  +      YN L+        + EA  LFE+M+       D   Y   +++    G
Sbjct: 669 MIEKGYVPTVTSYNALIKRFYKKKKILEARELFEEMRGHGLV-ADGEIYNFFVDMCYEEG 727

Query: 448 NVDNAIELFEEMSE 461
           +V+  + L +E  E
Sbjct: 728 DVEITLNLCDEAIE 741



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 116/268 (43%), Gaps = 36/268 (13%)

Query: 288 WKPDPIAFSVLGKMFGESG---------------------------------DYDGIRYV 314
           W P+PIAF +  ++  E G                                 + +GI   
Sbjct: 186 WGPNPIAFDIFFQVLVEIGHLSEARKLLDKLLSYGLVVTVDSCNAFLSRIANNSEGIEMA 245

Query: 315 LQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK 374
           ++     G+  N   YN ++ ++ + GK   A  L  +M     TPD  + + +I  Y  
Sbjct: 246 IKVFCEYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCH 305

Query: 375 ARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNY 434
               K AL+L + M+      +   YN+++ +   IG   EAE++  +M +S    PDN 
Sbjct: 306 LGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREM-MSQKIIPDNV 364

Query: 435 SYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVS 494
            YT +++ +   G+V  A + F+EM    ++ + +  T LIQ  G+  ++ +   +F   
Sbjct: 365 VYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEM 424

Query: 495 IDRGVKPDDRLCGCLLSVVSLCETSEDV 522
           I RG+KPD+     L+ V   C+  E V
Sbjct: 425 ISRGLKPDEVTYTTLIDVY--CKAGEMV 450



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 89/416 (21%), Positives = 176/416 (42%), Gaps = 56/416 (13%)

Query: 203 FQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLF-------DEAIEWFERMY-KTGLM 254
           FQ++ ++ +   + ++ LD +    ++     CN F        E IE   +++ + G+ 
Sbjct: 197 FQVLVEIGHLSEARKL-LDKLLSYGLVVTVDSCNAFLSRIANNSEGIEMAIKVFCEYGIS 255

Query: 255 PDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYV 314
            +  +Y+ I+    + GKV+E   L  +       PD +++S +   +   G+      +
Sbjct: 256 WNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKALKL 315

Query: 315 LQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK 374
           + +M+  G++PN   YN+++  + K GK   A  +  EM+   + PD             
Sbjct: 316 MDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDN------------ 363

Query: 375 ARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNY 434
                                  ++Y TL++    +G V  A + F++M LS    PD  
Sbjct: 364 -----------------------VVYTTLIHGFFKLGHVRTANKWFDEM-LSKKISPDYI 399

Query: 435 SYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVS 494
           +YT ++  +G GG V     LF EM   G+  + +  T LI    KA  + +   +    
Sbjct: 400 TYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEM 459

Query: 495 IDRGVKPDDRLCGCLLSVVSLCETSE--DVGKVITCLQQANPKL-VAFLNLIEDNSTGFE 551
           +  G+ P+    G L+    LC+  E     +++  +++   +L V   N + +      
Sbjct: 460 VQMGMTPNIVTYGALID--GLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAG 517

Query: 552 NIKEEFRNVIKDTEVDARRP----FCNCLIDICRNRNLNERAHELLYLGTLYGLYP 603
           NI++  + ++K+ EV    P    +   +   CR  ++ ++AH+LL      GL P
Sbjct: 518 NIEQAIK-LMKEMEVAGIDPDAITYTTVIDAYCRLGDI-DKAHKLLQEMLDRGLQP 571



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 80/172 (46%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
            + +NV M         +  ++L   M+   I  D ITY+T++      N  +   + ++
Sbjct: 573 VVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYK 632

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
           RM   G+ PD  TY+ ++  + K+  ++E   LY+  +  G+ P   +++ L K F +  
Sbjct: 633 RMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKK 692

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
                R + +EM+  G+  +  +YN  ++   + G   +  +L DE +E  L
Sbjct: 693 KILEARELFEEMRGHGLVADGEIYNFFVDMCYEEGDVEITLNLCDEAIEKCL 744


>gi|147862640|emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera]
          Length = 1024

 Score =  132 bits (331), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 91/334 (27%), Positives = 158/334 (47%), Gaps = 35/334 (10%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
           +EM+ + +  +N  Y+ +I    +     EA+  F R++  G++PD  T SA +    K+
Sbjct: 567 DEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHALGVLPDVQTCSAFIHGLLKN 626

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
           G+V+E L ++      G  PD   +S L   F + G+ +    +  EM   G+ PN+ +Y
Sbjct: 627 GRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIY 686

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM-R 389
           N L++ + K+G    AR LFD M E GL PD  T + +I  Y K+    +A  L+  M  
Sbjct: 687 NALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPS 746

Query: 390 ENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM-------------KLSDYCK------ 430
           +   P  F+ YN L++ C   G +E+A  LF +M              +  YCK      
Sbjct: 747 KGVQPHSFV-YNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNTLIDGYCKSCKIQE 805

Query: 431 --------------PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
                         PD+ +YT +++ +   G ++ A  LF+EM E  + ++ +  T L+ 
Sbjct: 806 ASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMY 865

Query: 477 CLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
              K  +  ++  +F   + +GVKPD+   G ++
Sbjct: 866 GYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVI 899



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 87/294 (29%), Positives = 135/294 (45%), Gaps = 7/294 (2%)

Query: 212 EMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG 271
           EM    +  +   YS +I    +    DEA+E    M + GL+P+  TY+ I     ++ 
Sbjct: 253 EMDEKGLNPNEFIYSLVIEGMCQVGDIDEAVELKRSMGEKGLVPNTYTYTIITAGLCRAK 312

Query: 272 KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYN 331
           ++ E    +E    +G KPD  A S L   F   GD D +  +   M S G+  NL+ YN
Sbjct: 313 RMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYN 372

Query: 332 TLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN 391
            L+  + K GK   A  +   MV  G  P+ +T   LI+ Y +      ALEL + M + 
Sbjct: 373 VLIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKR 432

Query: 392 KWPMDFILYNTLLN---MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
                 + Y  ++N    C D+ L   A +L E M  S   KP+   Y+ ++  Y S G 
Sbjct: 433 NLVPSAVSYGAMINGLCHCKDLSL---ANKLLEKMTFSGL-KPNVVVYSILIMAYASEGR 488

Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           ++ A  L + MS  GVA ++     +I CL KA ++++          RG+KPD
Sbjct: 489 IEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPD 542



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 133/278 (47%), Gaps = 1/278 (0%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
            + Y++ + +     + +   +L + M  + +  D   Y+ II+C  +    +EA  +  
Sbjct: 473 VVVYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLL 532

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
            +   GL PD VT+ A +  Y+K+GK+ E    ++  +  G  P+   ++VL     ++G
Sbjct: 533 EIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAG 592

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
           +      + + + +LGV P++   +  +  + K G+   A  +F E+ E GL PD  T +
Sbjct: 593 NLMEALSIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYS 652

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
           +LI  + K    + A EL + M       +  +YN L++     G ++ A +LF+ M   
Sbjct: 653 SLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMP-E 711

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
              +PD+ +Y+ M++ Y    NV  A  LF EM   GV
Sbjct: 712 KGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGV 749



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 91/355 (25%), Positives = 160/355 (45%), Gaps = 38/355 (10%)

Query: 184 PMETIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
           P+  I YNV +  L +FG+  +  E L   MV+   + ++ T+  +I    R +    A+
Sbjct: 365 PINLITYNVLIHGLCKFGKMEKAAEILKG-MVTLGCKPNSRTFCLLIEGYCREHNMGRAL 423

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
           E  + M K  L+P  V+Y A+++       +     L E+   SG KP+ + +S+L   +
Sbjct: 424 ELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAY 483

Query: 303 GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK-------------PGL---- 345
              G  +  R +L  M   GV P++  YN ++  + KAGK              GL    
Sbjct: 484 ASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDA 543

Query: 346 ------------------ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
                             A   FDEM++ GL P+    T LI  + KA    +AL ++ R
Sbjct: 544 VTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRR 603

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           +       D    +  ++     G V+EA ++F ++K      PD ++Y+++++ +   G
Sbjct: 604 LHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLV-PDVFTYSSLISGFCKQG 662

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            V+ A EL +EM   G+A N+     L+  L K+  I    ++F    ++G++PD
Sbjct: 663 EVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPD 717



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 162/370 (43%), Gaps = 38/370 (10%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           Q++   F+ +K + L P +   Y+  +       + +   +L +EM    I  +   Y+ 
Sbjct: 630 QEALKVFSELKEKGLVP-DVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNA 688

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           ++    +      A + F+ M + GL PD VTYS ++D Y KS  V E  SL+    + G
Sbjct: 689 LVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKG 748

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
            +P    ++ L     + GD +    + +EM   G    L  +NTL++   K+ K   A 
Sbjct: 749 VQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTL-SFNTLIDGYCKSCKIQEAS 807

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
            LF EM+   + PD  T T +I  + KA   ++A  L++ M+E    +D + Y +L+   
Sbjct: 808 QLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGY 867

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML-----------------NIYGSG---- 446
             +G   E   LFE M ++   KPD  +Y  ++                  + G G    
Sbjct: 868 NKLGQSSEVFALFEKM-VAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTK 926

Query: 447 GNVDN--------------AIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFG 492
           G + +              A +L +EM ELG+  ++  C  L++   +A ++D+  RVF 
Sbjct: 927 GTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACNTLVRSFHEAGKMDEATRVFE 986

Query: 493 VSIDRGVKPD 502
                G+ PD
Sbjct: 987 GVKSLGLVPD 996



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/325 (24%), Positives = 150/325 (46%), Gaps = 2/325 (0%)

Query: 177 IKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCN 236
           ++ +NL P   + Y   +  L   +   L  +L  +M  + ++ + + YS +I       
Sbjct: 429 MEKRNLVP-SAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEG 487

Query: 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS 296
             +EA    + M  +G+ PD   Y+AI+   +K+GK+EE  +        G KPD + F 
Sbjct: 488 RIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFG 547

Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356
                + ++G          EM   G+ PN  +Y  L+    KAG    A S+F  +   
Sbjct: 548 AFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHAL 607

Query: 357 GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEA 416
           G+ PD +T +A I    K    ++AL+++  ++E     D   Y++L++     G VE+A
Sbjct: 608 GVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKA 667

Query: 417 ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
             L ++M L     P+ + Y A+++     G++  A +LF+ M E G+  + +  + +I 
Sbjct: 668 FELHDEMCLKGI-APNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMID 726

Query: 477 CLGKARRIDDLVRVFGVSIDRGVKP 501
              K+  + +   +F     +GV+P
Sbjct: 727 GYCKSENVAEAFSLFHEMPSKGVQP 751



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 147/326 (45%), Gaps = 2/326 (0%)

Query: 180 QNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFD 239
           + L P E I+  V     + G   + +E L   M    +  +  TY+ I     R    +
Sbjct: 257 KGLNPNEFIYSLVIEGMCQVGDIDEAVE-LKRSMGEKGLVPNTYTYTIITAGLCRAKRMN 315

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           EA   FE M KTGL PD    SA++D + + G ++EVL + +  V+ G   + I ++VL 
Sbjct: 316 EAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLI 375

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
               + G  +    +L+ M +LG +PN   +  L+E   +    G A  L DEM +  L 
Sbjct: 376 HGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLV 435

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
           P   +  A+I      +    A +L E+M  +    + ++Y+ L+   A  G +EEA RL
Sbjct: 436 PSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRL 495

Query: 420 FEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479
            + M  S    PD + Y A+++     G ++ A     E+   G+  + +     I    
Sbjct: 496 LDGMSCSG-VAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYS 554

Query: 480 KARRIDDLVRVFGVSIDRGVKPDDRL 505
           K  ++ +  + F   +D G+ P++ L
Sbjct: 555 KTGKMTEAAKYFDEMLDHGLMPNNPL 580



 Score = 79.7 bits (195), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 82/376 (21%), Positives = 153/376 (40%), Gaps = 58/376 (15%)

Query: 143 RAITEIPHQPTREN-----ALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSL 197
           + I    H P++ N     A+L  N +   ++   FF W +SQ   P     +++    L
Sbjct: 57  KTIMVSSHIPSKLNPDVIRAVLHQNQVGDPKRLLDFFYWSQSQMGVPQFLDSFSILAVQL 116

Query: 198 RFGRQFQLIEQLANEMV----SNEIELDNI-------------TYSTIITCAKRCNLFDE 240
                F L   +  +M+    S+   LD++              +  +I   KR  + DE
Sbjct: 117 CNSELFGLANGVLTQMIRTPYSSSSILDSVLFWFRNYGGSSPVVFDILIDSYKRMGMLDE 176

Query: 241 AIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGK 300
           A   F       ++   +  +++L    K G +E    +Y   + +    D   ++ L  
Sbjct: 177 AANVFFVAKNDSILISLIRCNSLLKDLLKCGMMELFWKVYNGMLDAKMGFDVYTYTYLVG 236

Query: 301 MFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK------------------ 342
              ++GD  G + VL EM   G+ PN  +Y+ ++E M + G                   
Sbjct: 237 ALCKTGDLRGAKRVLIEMDEKGLNPNEFIYSLVIEGMCQVGDIDEAVELKRSMGEKGLVP 296

Query: 343 ---------PGLARS--------LFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
                     GL R+         F+EM ++GL PD    +ALI  + +     + L + 
Sbjct: 297 NTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIK 356

Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445
           + M     P++ I YN L++     G +E+A  + + M ++  CKP++ ++  ++  Y  
Sbjct: 357 DVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGM-VTLGCKPNSRTFCLLIEGYCR 415

Query: 446 GGNVDNAIELFEEMSE 461
             N+  A+EL +EM +
Sbjct: 416 EHNMGRALELLDEMEK 431


>gi|115471383|ref|NP_001059290.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|33146978|dbj|BAC80051.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50508482|dbj|BAD30659.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610826|dbj|BAF21204.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|215767773|dbj|BAH00002.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 882

 Score =  132 bits (331), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 84/341 (24%), Positives = 169/341 (49%), Gaps = 4/341 (1%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN+ +  L  G + +   ++ +EM    +  + +T + ++    +    +EA + FE   
Sbjct: 391 YNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESAS 450

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
           + G  PD VTY +++D   K G+V+E   L+E+ + +G   +P+ ++ L + F   G  +
Sbjct: 451 QRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKE 510

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               + +E+   G +P+L + NT ++ + KAG+    R +F+++   G  PD ++ + LI
Sbjct: 511 DGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILI 570

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
               KA  A++   ++  M++  + +D   YN +++     G V +A  + E+MK     
Sbjct: 571 HGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMK-EKCV 629

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
           +P   +Y A+++       +D A  LFEE    G+ +NV+  + LI   GK  RID+   
Sbjct: 630 QPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYL 689

Query: 490 VFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQ 530
           +    + +G+ P+      LL  +     +E++ + + C Q
Sbjct: 690 ILEEMMKKGLTPNVYTWNSLLDALV---KAEEINEALVCFQ 727



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 145/301 (48%), Gaps = 11/301 (3%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
            Y+ +I         + A+E   +M + G       ++ ++   A+ G+V + L+L +  
Sbjct: 181 AYTVLIGALAEARRPERALELLRQMQEVGYEVGVHLFTTLVRALAREGQVADALALVDEV 240

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
             S  +PD + ++V    FG++G+ D       E+K+ G++P+ V Y +++  + KAG+ 
Sbjct: 241 KGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRL 300

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
           G A  LF +M      P       +I  YG A   +DA +L ER+RE       + +N++
Sbjct: 301 GEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSI 360

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           L        V+EA  LFE MK     +P++ +Y  ++++   GG V+ A  + +EM    
Sbjct: 361 LTCLGKKRKVDEALSLFEVMKKD--AEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHAS 418

Query: 464 VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVG 523
           +  N++    ++  L KAR++++  ++F  +  RG  PD          V+ C   + +G
Sbjct: 419 LFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPD---------CVTYCSLIDGLG 469

Query: 524 K 524
           K
Sbjct: 470 K 470



 Score =  115 bits (289), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 147/326 (45%), Gaps = 2/326 (0%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           +K    F  I+S    P +   Y++ +  L    Q +    + + M      LD   Y+ 
Sbjct: 545 EKGRMIFEDIRSYGFLP-DVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNA 603

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           ++    +     +A E  E M +  + P   TY AI+D  AK  +++E   L+E   + G
Sbjct: 604 VVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKG 663

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
            + + + +S L   FG+ G  D    +L+EM   G+ PN+  +N+LL+A+ KA +   A 
Sbjct: 664 IELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEAL 723

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
             F  M E    P+  T + LI    + +    A   W+ M++     + + Y T+++  
Sbjct: 724 VCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGL 783

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
           A +G + +A  LFE  K ++   PD  S+ A++    +      A ++FEE    G  IN
Sbjct: 784 AKVGNITDAYSLFERFK-ANGGIPDAASFNALIEGMSNANRAMEAYQVFEETRLRGCRIN 842

Query: 468 VMGCTCLIQCLGKARRIDDLVRVFGV 493
           +  C  L+  L K+  ++    V  V
Sbjct: 843 IKSCISLLDALNKSECLEQAAIVGAV 868



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 143/311 (45%), Gaps = 1/311 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D  +YS +I    +     E    F  M + G   D   Y+A++D + KSGKV +   + 
Sbjct: 562 DVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEIL 621

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
           E       +P    +  +     +    D    + +E KS G++ N+V+Y++L++  GK 
Sbjct: 622 EEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKV 681

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G+   A  + +EM++ GLTP+  T  +L+    KA    +AL  ++ M+E K P +   Y
Sbjct: 682 GRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTY 741

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           + L+N    +    +A   ++DM+      P+  +YT M++     GN+ +A  LFE   
Sbjct: 742 SILINGLCRVQKYNKAFVFWQDMQKQGLV-PNVVTYTTMISGLAKVGNITDAYSLFERFK 800

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSE 520
             G   +      LI+ +  A R  +  +VF  +  RG + + + C  LL  ++  E  E
Sbjct: 801 ANGGIPDAASFNALIEGMSNANRAMEAYQVFEETRLRGCRINIKSCISLLDALNKSECLE 860

Query: 521 DVGKVITCLQQ 531
               V   L++
Sbjct: 861 QAAIVGAVLRE 871



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 82/370 (22%), Positives = 162/370 (43%), Gaps = 39/370 (10%)

Query: 199 FGRQFQLIEQLA--NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPD 256
             R+ Q+ + LA  +E+  + +E D + Y+  I C  +    D A ++F  +   GL PD
Sbjct: 224 LAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKAQGLKPD 283

Query: 257 EVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQ 316
           +V+Y++++ V  K+G++ E   L+ +  A    P   A++ +   +G +G ++    +L+
Sbjct: 284 DVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLE 343

Query: 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
            ++  G  P++V +N++L  +GK  K   A SLF E+++    P+  T   +I +     
Sbjct: 344 RLRERGCIPSVVSFNSILTCLGKKRKVDEALSLF-EVMKKDAEPNSSTYNIIIDMLCLGG 402

Query: 377 WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY 436
             ++A  + + M       + +  N +++       +EEA ++FE       C PD  +Y
Sbjct: 403 RVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRG-CNPDCVTY 461

Query: 437 TAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ-------------------- 476
            ++++  G  G VD A  LFE+M + G   N +  T LI+                    
Sbjct: 462 CSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIR 521

Query: 477 ---------------CLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSED 521
                          C+ KA  ++    +F      G  PD R    L+  ++    + +
Sbjct: 522 RGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARE 581

Query: 522 VGKVITCLQQ 531
              +   ++Q
Sbjct: 582 TSNIFHAMKQ 591



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 85/217 (39%), Gaps = 35/217 (16%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  E  S  IEL+ + YS++I    +    DEA    E M K GL P+  T++++LD   
Sbjct: 655 LFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALV 714

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           K+ ++ E L  ++        P+   +S+L         Y+      Q+M+  G+ PN+V
Sbjct: 715 KAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVV 774

Query: 329 VY-----------------------------------NTLLEAMGKAGKPGLARSLFDEM 353
            Y                                   N L+E M  A +   A  +F+E 
Sbjct: 775 TYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGMSNANRAMEAYQVFEET 834

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
              G   + K+  +L+    K+   + A  +   +RE
Sbjct: 835 RLRGCRINIKSCISLLDALNKSECLEQAAIVGAVLRE 871


>gi|302794007|ref|XP_002978768.1| hypothetical protein SELMODRAFT_109608 [Selaginella moellendorffii]
 gi|300153577|gb|EFJ20215.1| hypothetical protein SELMODRAFT_109608 [Selaginella moellendorffii]
          Length = 713

 Score =  132 bits (331), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 87/338 (25%), Positives = 168/338 (49%), Gaps = 3/338 (0%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           +F   K++NL P   I YN  +++       + +E L  +M     + +   Y+T++   
Sbjct: 223 WFEKFKAENLVP-GGIVYNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGF 281

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
                 ++ + +F R+   GL P   TY  I+ ++ K+G + + L + E     G  P+ 
Sbjct: 282 AEIRDEEKCLSFFHRLKACGLSPTAATYGCIVKLFTKAGNMAKALDILEEMDKHGVSPNK 341

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           + ++++   +   GD+     V ++M S G++P++V YN L+ A  KAG+   A  + + 
Sbjct: 342 MIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVTYNILVHAFCKAGRMDKALGVLEN 401

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           +  + L P  +T T+++  Y K    + ALE+++R++        + YN+LL+  A    
Sbjct: 402 IQANRLLPTIETYTSILDGYVKGGHIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQ 461

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
           +E A RL  D  L++   P+  SYTA+   Y   G+V+ A  +F+ M +  +AI+++   
Sbjct: 462 MENA-RLMLDEMLANGVVPNERSYTALTEGYARAGDVEKAFGMFQRMKKENLAIDIVAYG 520

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
            L++   K+  +   V VF    D G+K  +R+  C +
Sbjct: 521 ALLKACCKSGAMQRAVEVFQQITDAGLK-HNRITYCTM 557



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/399 (23%), Positives = 191/399 (47%), Gaps = 8/399 (2%)

Query: 137 TEEAFLRAITEIPHQPTRENALLILNS---LKFWQKSYFFFNWIKSQNLFPMETIFYNVT 193
           T EA L  + E   Q        +LN    ++  +K   FF+ +K+  L P    +  + 
Sbjct: 254 TVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKACGLSPTAATYGCIV 313

Query: 194 MKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGL 253
               + G   + ++ L  EM  + +  + + Y+ I+    R   F  A + +E M   GL
Sbjct: 314 KLFTKAGNMAKALDIL-EEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGL 372

Query: 254 MPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRY 313
            PD VTY+ ++  + K+G++++ L + E   A+   P    ++ +   + + G       
Sbjct: 373 KPDIVTYNILVHAFCKAGRMDKALGVLENIQANRLLPTIETYTSILDGYVKGGHIQKALE 432

Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYG 373
           V   +K+ G++P +V YN+LL  + KA +   AR + DEM+ +G+ P+E++ TAL + Y 
Sbjct: 433 VFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLDEMLANGVVPNERSYTALTEGYA 492

Query: 374 KARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDN 433
           +A   + A  +++RM++    +D + Y  LL  C   G ++ A  +F+ +  +   K + 
Sbjct: 493 RAGDVEKAFGMFQRMKKENLAIDIVAYGALLKACCKSGAMQRAVEVFQQITDAGL-KHNR 551

Query: 434 YSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGV 493
            +Y  ML+ +   G +  A +L ++M + G  ++ +  T  I+   ++   +++     V
Sbjct: 552 ITYCTMLDGWARKGELSKARDLLKDMQKHGFHLDTICYTSFIKACFRSGDTEEVTETLAV 611

Query: 494 SIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQA 532
             ++ ++ + R      +++     + D  + I+C +QA
Sbjct: 612 MREKKLEVNART---YTTLIHGWLAAADPDQAISCYEQA 647



 Score =  115 bits (288), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 95/430 (22%), Positives = 194/430 (45%), Gaps = 19/430 (4%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           F  +++ ++ P   I Y   + +    R  +       EM+S  I+L+   + +II+   
Sbjct: 154 FEAMRASHIKPNVHI-YTSLIHAYAEARDMEGAVACTEEMLSQGIQLNEAVFCSIISGYA 212

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
                + A  WFE+     L+P  + Y++I+  Y ++G +E V +L  +    G++ +  
Sbjct: 213 SAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLG 272

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
            ++ +   F E  D +        +K+ G+ P    Y  +++   KAG    A  + +EM
Sbjct: 273 LYTTVLNGFAEIRDEEKCLSFFHRLKACGLSPTAATYGCIVKLFTKAGNMAKALDILEEM 332

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
            + G++P++     ++  Y +      A ++WE M       D + YN L++     G +
Sbjct: 333 DKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVTYNILVHAFCKAGRM 392

Query: 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTC 473
           ++A  + E+++ ++   P   +YT++L+ Y  GG++  A+E+F+ +   G+   V+    
Sbjct: 393 DKALGVLENIQ-ANRLLPTIETYTSILDGYVKGGHIQKALEVFDRIKTAGLRPGVVSYNS 451

Query: 474 LIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCET---SEDVGKVITCLQ 530
           L+  L KAR++++   +    +  GV P++R      S  +L E    + DV K     Q
Sbjct: 452 LLSGLAKARQMENARLMLDEMLANGVVPNER------SYTALTEGYARAGDVEKAFGMFQ 505

Query: 531 QANPK-----LVAFLNLIED--NSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNR 583
           +   +     +VA+  L++    S   +   E F+ +        R  +C  L    R  
Sbjct: 506 RMKKENLAIDIVAYGALLKACCKSGAMQRAVEVFQQITDAGLKHNRITYCTMLDGWARKG 565

Query: 584 NLNERAHELL 593
            L+ +A +LL
Sbjct: 566 ELS-KARDLL 574



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/325 (22%), Positives = 144/325 (44%), Gaps = 34/325 (10%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           + Y + M     G  F    ++  +MVS  ++ D +TY+ ++    +    D+A+   E 
Sbjct: 342 MIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVTYNILVHAFCKAGRMDKALGVLEN 401

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           +    L+P   TY++ILD Y K G +++ L +++R   +G +P  ++++ L     ++  
Sbjct: 402 IQANRLLPTIETYTSILDGYVKGGHIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQ 461

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
            +  R +L EM + GV PN   Y  L E   +AG    A  +F  M +  L  D     A
Sbjct: 462 MENARLMLDEMLANGVVPNERSYTALTEGYARAGDVEKAFGMFQRMKKENLAIDIVAYGA 521

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK--- 424
           L+K   K+   + A+E+++++ +     + I Y T+L+  A  G + +A  L +DM+   
Sbjct: 522 LLKACCKSGAMQRAVEVFQQITDAGLKHNRITYCTMLDGWARKGELSKARDLLKDMQKHG 581

Query: 425 --LSDYC-----------------------------KPDNYSYTAMLNIYGSGGNVDNAI 453
             L   C                             + +  +YT +++ + +  + D AI
Sbjct: 582 FHLDTICYTSFIKACFRSGDTEEVTETLAVMREKKLEVNARTYTTLIHGWLAAADPDQAI 641

Query: 454 ELFEEMSELGVAINVMGCTCLIQCL 478
             +E+    G+ ++     CL+  L
Sbjct: 642 SCYEQAKASGLQLDSALSNCLLSGL 666



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 109/243 (44%), Gaps = 1/243 (0%)

Query: 260 YSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMK 319
           Y  ++D YA+ G      + +E   AS  KP+   ++ L   + E+ D +G     +EM 
Sbjct: 134 YGLLVDFYARHGDKVAARATFEAMRASHIKPNVHIYTSLIHAYAEARDMEGAVACTEEML 193

Query: 320 SLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAK 379
           S G+Q N  V+ +++     AG    A   F++     L P      ++++ Y +A   +
Sbjct: 194 SQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQAGNME 253

Query: 380 DALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAM 439
               L  +M E  +  +  LY T+LN  A+I   E+    F  +K      P   +Y  +
Sbjct: 254 TVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKACGL-SPTAATYGCI 312

Query: 440 LNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGV 499
           + ++   GN+  A+++ EEM + GV+ N M    ++    +        +V+   +  G+
Sbjct: 313 VKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGL 372

Query: 500 KPD 502
           KPD
Sbjct: 373 KPD 375



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 116/257 (45%), Gaps = 4/257 (1%)

Query: 152 PTRENALLILNSL---KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           PT E    IL+        QK+   F+ IK+  L P   + YN  +  L   RQ +    
Sbjct: 409 PTIETYTSILDGYVKGGHIQKALEVFDRIKTAGLRP-GVVSYNSLLSGLAKARQMENARL 467

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           + +EM++N +  +  +Y+ +     R    ++A   F+RM K  L  D V Y A+L    
Sbjct: 468 MLDEMLANGVVPNERSYTALTEGYARAGDVEKAFGMFQRMKKENLAIDIVAYGALLKACC 527

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           KSG ++  + ++++   +G K + I +  +   +   G+    R +L++M+  G   + +
Sbjct: 528 KSGAMQRAVEVFQQITDAGLKHNRITYCTMLDGWARKGELSKARDLLKDMQKHGFHLDTI 587

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            Y + ++A  ++G           M E  L  + +T T LI  +  A     A+  +E+ 
Sbjct: 588 CYTSFIKACFRSGDTEEVTETLAVMREKKLEVNARTYTTLIHGWLAAADPDQAISCYEQA 647

Query: 389 RENKWPMDFILYNTLLN 405
           + +   +D  L N LL+
Sbjct: 648 KASGLQLDSALSNCLLS 664


>gi|410110113|gb|AFV61136.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           filifolia]
          Length = 439

 Score =  132 bits (331), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 92/295 (31%), Positives = 151/295 (51%), Gaps = 7/295 (2%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L +EM    +  D  TYST+IT   +  LFD A+ W ++M +  +  D V YS ++++  
Sbjct: 2   LFDEMRRRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELSR 61

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           K     + +S++ R   SG+ PD +A++ +  +FG++  +   R ++ EMK+ GV PN  
Sbjct: 62  KLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTT 121

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            Y+TLL    +  K   A S+F EM E     D  T   +I +YG+   AK+A +L+  M
Sbjct: 122 SYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM 181

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
           R+     + + YNTLL +  D  L  EA  LF  M+  +  + +  +Y +M+ IYG    
Sbjct: 182 RKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKN-IEQNVVTYNSMMMIYGKTLE 240

Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF------GVSIDR 497
            + A  L +EM   G+  N +  + +I   GK  ++D    +F      GV ID+
Sbjct: 241 HEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQ 295



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 83/367 (22%), Positives = 171/367 (46%), Gaps = 6/367 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K     P + + YN  +      + F+    L +EM +  +  +  +YS
Sbjct: 66  YSKAISIFSRLKRSGFTP-DLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYS 124

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY + G  +E   L+      
Sbjct: 125 TLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 184

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   ++ N+V YN+++   GK  +   A
Sbjct: 185 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKA 244

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R +   +D IL+ T++  
Sbjct: 245 NNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVA 304

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K     +PDN      ++I    G ++ A  +F +  + G   
Sbjct: 305 YERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVK 359

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           ++     +I  L K ++  ++V VF      G  PD  +   +L+     +  +    V 
Sbjct: 360 DITVFERMIHLLSKYKKXSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVY 419

Query: 527 TCLQQAN 533
             +Q+  
Sbjct: 420 MEMQEVG 426



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 97/220 (44%), Gaps = 1/220 (0%)

Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYG 373
           +  EM+   + P+   Y+TL+   GK G    A S   +M +  +  D    + LI++  
Sbjct: 2   LFDEMRRRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELSR 61

Query: 374 KARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDN 433
           K      A+ ++ R++ + +  D + YN ++N+     L  EA  L  +MK +    P+ 
Sbjct: 62  KLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAG-VMPNT 120

Query: 434 YSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGV 493
            SY+ +L +Y        A+ +F EM E+   +++  C  +I   G+     +  ++F  
Sbjct: 121 TSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWG 180

Query: 494 SIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN 533
               G++P+      LL V    E   +   +   +Q+ N
Sbjct: 181 MRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKN 220


>gi|357494939|ref|XP_003617758.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519093|gb|AET00717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 906

 Score =  132 bits (331), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 153/293 (52%), Gaps = 4/293 (1%)

Query: 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
            DEA   F  +      PD  T+ +++D   + G+V++  SLYE+ + S   P+ + ++ 
Sbjct: 463 LDEACSIFLGLDHKVCSPDSRTFCSLIDGLGRRGRVDDAYSLYEKMLDSDQIPNVVVYTS 522

Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
           L + F + G  +    + +EM   G  P+L++ N+ ++ + KAG+    R+LF+E+   G
Sbjct: 523 LIQNFFKCGRKEDGHKIYKEMVHRGCSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQG 582

Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417
           L PD ++ + LI    KA ++++  +L+  M+E    +D + YNT+++     G V++A 
Sbjct: 583 LVPDVRSYSILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAY 642

Query: 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
           +L E+MK     +P   +Y ++++       +D A  LFEE   +GV +NV+  + LI  
Sbjct: 643 QLLEEMKTKGL-QPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDG 701

Query: 478 LGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQ 530
            GK  RID+   +    + +G+ P+     CLL  +     +E++ +   C Q
Sbjct: 702 FGKVGRIDEAYLILEELMQKGLTPNSYTWNCLLDALV---KAEEIDEAQVCFQ 751



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 94/355 (26%), Positives = 158/355 (44%), Gaps = 10/355 (2%)

Query: 160 ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIE 219
           ++  LK    ++ +F W++ +         YN  +  +   R    +EQ+  EM      
Sbjct: 106 VMKRLKDVNVAFQYFRWVERKTQQAHCPEVYNAFLMVMARTRNLDYLEQILEEMSVAGFG 165

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
           L N     ++    + +   EA    E M K    P    Y+ ++   + + + + +L+L
Sbjct: 166 LSNHVSVELVASFVKSHKLKEAFGVIEMMRKFKFRPAFSAYTTLIGALSAANRPDPMLTL 225

Query: 280 YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
           + +    G++ +   F+ L ++F   G  D    +L EMKS     +LV+YN  ++  GK
Sbjct: 226 FHQMQEIGYEANVHLFTTLVRVFAREGRIDAALSLLDEMKSNSFTADLVLYNVCIDCFGK 285

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
            GK  +A   F EM   GL PD+ T T LI +  KAR   +A+EL+E +  N+       
Sbjct: 286 VGKVDMAWKFFHEMKAQGLVPDDVTYTTLIGVLCKARRLDEAVELFEELDLNRSVPCVYA 345

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           YNT++      G  +EA  L E  K    C P   +Y  +L   G  G V+ A+ + +EM
Sbjct: 346 YNTMIMGYGSAGKFDEAYSLLERQKRKG-CIPSVIAYNCILTCLGRKGKVEEALRIHDEM 404

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD--------DRLC 506
            +   A N+     LI  L KA  ++  ++V     + G+ P+        DRLC
Sbjct: 405 RQ-DAAPNLTTYNILIDMLCKAGELEAALKVQDTMKEAGLFPNIMTVNIMIDRLC 458



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 92/317 (29%), Positives = 145/317 (45%), Gaps = 8/317 (2%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSL---RFGRQFQLIEQLANEMVSNEIELDNIT 224
           +K    F  IK+Q L P +   Y++ +  L    F R+     +L  EM    + LD + 
Sbjct: 569 EKGRALFEEIKAQGLVP-DVRSYSILIHGLVKAGFSRE---TYKLFYEMKEQGLHLDVLA 624

Query: 225 YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
           Y+T+I    +    D+A +  E M   GL P  VTY +++D  AK  +++E   L+E   
Sbjct: 625 YNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVTYGSVVDGLAKIDRLDEAYMLFEEAK 684

Query: 285 ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344
           + G   + + +S L   FG+ G  D    +L+E+   G+ PN   +N LL+A+ KA +  
Sbjct: 685 SIGVDLNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNSYTWNCLLDALVKAEEID 744

Query: 345 LARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
            A+  F  M     +P+  T + +I      R    A   W+ M++     + I Y T++
Sbjct: 745 EAQVCFQNMKNLKCSPNAMTYSIMINGLCMIRKFNKAFVFWQEMQKQGLKPNNITYTTMI 804

Query: 405 NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
              A  G V EA  LF+  K S    PD+  Y AM+    S     +A  +FEE    G 
Sbjct: 805 AGLAKAGNVMEARGLFDRFKASGGV-PDSACYNAMIEGLSSANKAMDAYIVFEETRLKGC 863

Query: 465 AINVMGCTCLIQCLGKA 481
            +N   C  L+  L KA
Sbjct: 864 RVNSKTCVVLLDALHKA 880



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 155/330 (46%), Gaps = 3/330 (0%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           FF+ +K+Q L P + + Y   +  L   R+     +L  E+  N        Y+T+I   
Sbjct: 295 FFHEMKAQGLVP-DDVTYTTLIGVLCKARRLDEAVELFEELDLNRSVPCVYAYNTMIMGY 353

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
                FDEA    ER  + G +P  + Y+ IL    + GKVEE L +++  +     P+ 
Sbjct: 354 GSAGKFDEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRIHDE-MRQDAAPNL 412

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
             +++L  M  ++G+ +    V   MK  G+ PN++  N +++ + KA K   A S+F  
Sbjct: 413 TTYNILIDMLCKAGELEAALKVQDTMKEAGLFPNIMTVNIMIDRLCKAQKLDEACSIFLG 472

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           +     +PD +T  +LI   G+     DA  L+E+M ++    + ++Y +L+      G 
Sbjct: 473 LDHKVCSPDSRTFCSLIDGLGRRGRVDDAYSLYEKMLDSDQIPNVVVYTSLIQNFFKCGR 532

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
            E+  +++++M +   C PD     + ++     G V+    LFEE+   G+  +V   +
Sbjct: 533 KEDGHKIYKEM-VHRGCSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQGLVPDVRSYS 591

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            LI  L KA    +  ++F    ++G+  D
Sbjct: 592 ILIHGLVKAGFSRETYKLFYEMKEQGLHLD 621



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 143/311 (45%), Gaps = 1/311 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D  +YS +I    +     E  + F  M + GL  D + Y+ ++D + KSGKV++   L 
Sbjct: 586 DVRSYSILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLL 645

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
           E     G +P  + +  +     +    D    + +E KS+GV  N+V+Y++L++  GK 
Sbjct: 646 EEMKTKGLQPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGKV 705

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G+   A  + +E+++ GLTP+  T   L+    KA    +A   ++ M+  K   + + Y
Sbjct: 706 GRIDEAYLILEELMQKGLTPNSYTWNCLLDALVKAEEIDEAQVCFQNMKNLKCSPNAMTY 765

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           + ++N    I    +A   +++M+     KP+N +YT M+      GNV  A  LF+   
Sbjct: 766 SIMINGLCMIRKFNKAFVFWQEMQKQGL-KPNNITYTTMIAGLAKAGNVMEARGLFDRFK 824

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSE 520
             G   +      +I+ L  A +  D   VF  +  +G + + + C  LL  +   +  E
Sbjct: 825 ASGGVPDSACYNAMIEGLSSANKAMDAYIVFEETRLKGCRVNSKTCVVLLDALHKADCLE 884

Query: 521 DVGKVITCLQQ 531
               V   L++
Sbjct: 885 QAAIVGAVLRE 895



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 93/226 (41%), Gaps = 22/226 (9%)

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
           VYN  L  M +         + +EM  +G          L+  + K+   K+A  + E M
Sbjct: 135 VYNAFLMVMARTRNLDYLEQILEEMSVAGFGLSNHVSVELVASFVKSHKLKEAFGVIEMM 194

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAER------LFEDMKLSDYCKPDNYSYTAMLNI 442
           R+ K+   F  Y TL      IG +  A R      LF  M+   Y + + + +T ++ +
Sbjct: 195 RKFKFRPAFSAYTTL------IGALSAANRPDPMLTLFHQMQEIGY-EANVHLFTTLVRV 247

Query: 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           +   G +D A+ L +EM       +++     I C GK  ++D   + F     +G+ PD
Sbjct: 248 FAREGRIDAALSLLDEMKSNSFTADLVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGLVPD 307

Query: 503 D----RLCGCLLSVVSLCETSE-----DVGKVITCLQQANPKLVAF 539
           D     L G L     L E  E     D+ + + C+   N  ++ +
Sbjct: 308 DVTYTTLIGVLCKARRLDEAVELFEELDLNRSVPCVYAYNTMIMGY 353



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/260 (20%), Positives = 100/260 (38%), Gaps = 42/260 (16%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVT---MKSLRFGRQFQLIEQLANEMVSNEIELDNITY 225
           K+Y     +K++ L P    + +V     K  R    + L E    E  S  ++L+ + Y
Sbjct: 640 KAYQLLEEMKTKGLQPTVVTYGSVVDGLAKIDRLDEAYMLFE----EAKSIGVDLNVVIY 695

Query: 226 STIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV--------- 276
           S++I    +    DEA    E + + GL P+  T++ +LD   K+ +++E          
Sbjct: 696 SSLIDGFGKVGRIDEAYLILEELMQKGLTPNSYTWNCLLDALVKAEEIDEAQVCFQNMKN 755

Query: 277 --------------------------LSLYERGVASGWKPDPIAFSVLGKMFGESGDYDG 310
                                        ++     G KP+ I ++ +     ++G+   
Sbjct: 756 LKCSPNAMTYSIMINGLCMIRKFNKAFVFWQEMQKQGLKPNNITYTTMIAGLAKAGNVME 815

Query: 311 IRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK 370
            R +    K+ G  P+   YN ++E +  A K   A  +F+E    G   + KT   L+ 
Sbjct: 816 ARGLFDRFKASGGVPDSACYNAMIEGLSSANKAMDAYIVFEETRLKGCRVNSKTCVVLLD 875

Query: 371 IYGKARWAKDALELWERMRE 390
              KA   + A  +   +RE
Sbjct: 876 ALHKADCLEQAAIVGAVLRE 895


>gi|32527606|gb|AAP86200.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 654

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 93/328 (28%), Positives = 155/328 (47%), Gaps = 12/328 (3%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + YN  + +     +F   E+L +EM+   I    ITYS++I    + N  D A   F
Sbjct: 290 DVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQNRLDAAEHMF 349

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
             M   G  PD +T++ ++  Y ++ +V++ + L      +G   + I ++ L   F + 
Sbjct: 350 YLMATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQV 409

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES--------- 356
           GD +  + +LQEM S GV PN+V  NTLL+ +   GK   A  +F  M +S         
Sbjct: 410 GDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASHP 469

Query: 357 --GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
             G+ PD +T   LI          +A EL+E M       D I YN++++       ++
Sbjct: 470 FNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYNSVIHGLCKQSRLD 529

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
           EA ++F+ M    +  P+  ++T ++N Y   G VD+ +ELF EM   G+  N +    L
Sbjct: 530 EATQMFDSMGSKSF-SPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITL 588

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           I    K   I+  + +F   +  GV PD
Sbjct: 589 IHGFRKVGNINGALDIFQEMMASGVYPD 616



 Score = 82.4 bits (202), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 73/339 (21%), Positives = 136/339 (40%), Gaps = 51/339 (15%)

Query: 172 FFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITC 231
            F + ++S+ L P    F  +    +R GR   ++  L  +M    +  +  +++ ++ C
Sbjct: 65  LFGDMVRSRPL-PSVIDFCKLMGVVVRMGR-LDVVISLHRKMEMRRVPCNAYSFTILMKC 122

Query: 232 AKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291
              C+    A+  F ++ K G  P  VT+S +L       ++ E L L+ +         
Sbjct: 123 FCSCSKLPFALSTFGKITKLGFHPTVVTFSTLLHGLCVEDRISEALDLFHQMC------- 175

Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
                                           +PN+V + TL+  + + G+   A +L D
Sbjct: 176 --------------------------------KPNVVTFTTLMNGLCREGRVVEAVALLD 203

Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENK--------WPMDFILYNTL 403
            M+E GL P++ T   ++    K      AL L  +M E          WP++      +
Sbjct: 204 RMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIKPNVVIWPLE--RRTCM 261

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           +N     G   EA++L ++M       PD  +Y A++N +   G    A EL++EM   G
Sbjct: 262 INGFCSSGRWSEAQQLLQEMLERKKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRG 321

Query: 464 VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           +  + +  + +I    K  R+D    +F +   +G  PD
Sbjct: 322 IIPSTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPD 360



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 87/176 (49%), Gaps = 4/176 (2%)

Query: 216 NEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEE 275
           N +E D  TY+ +I+       F EA E +E M   G++PD +TY++++    K  +++E
Sbjct: 471 NGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYNSVIHGLCKQSRLDE 530

Query: 276 VLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLE 335
              +++   +  + P+ + F+ L   + ++G  D    +  EM   G+  N + Y TL+ 
Sbjct: 531 ATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIH 590

Query: 336 AMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN 391
              K G    A  +F EM+ SG+ PD  T+  ++       W+K+ L+    M E+
Sbjct: 591 GFRKVGNINGALDIFQEMMASGVYPDTITIRNML----TGLWSKEELKRAVAMLED 642



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 74/148 (50%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN+ +  L    +F   E+L  EM    I  D ITY+++I    + +  DEA + F+ M 
Sbjct: 480 YNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYNSVIHGLCKQSRLDEATQMFDSMG 539

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
                P+ VT++ +++ Y K+G+V++ L L+      G   + I +  L   F + G+ +
Sbjct: 540 SKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIHGFRKVGNIN 599

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
           G   + QEM + GV P+ +    +L  +
Sbjct: 600 GALDIFQEMMASGVYPDTITIRNMLTGL 627



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 101/234 (43%), Gaps = 17/234 (7%)

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKT-----------GLMP 255
           + L  EMVS+ +  + +T +T++          +A+E F+ M K+           G+ P
Sbjct: 416 QDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASHPFNGVEP 475

Query: 256 DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVL 315
           D  TY+ ++      GK  E   LYE     G  PD I ++ +     +    D    + 
Sbjct: 476 DVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYNSVIHGLCKQSRLDEATQMF 535

Query: 316 QEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA 375
             M S    PN+V + TL+    KAG+      LF EM   G+  +  T   LI  + K 
Sbjct: 536 DSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIHGFRKV 595

Query: 376 RWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAER---LFEDMKLS 426
                AL++++ M  +    D I   T+ NM   +   EE +R   + ED+++S
Sbjct: 596 GNINGALDIFQEMMASGVYPDTI---TIRNMLTGLWSKEELKRAVAMLEDLQMS 646



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/134 (23%), Positives = 64/134 (47%), Gaps = 2/134 (1%)

Query: 160 ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIE 219
           ++N  KF +    +   +  + + P +TI YN  +  L    +     Q+ + M S    
Sbjct: 487 LINEGKFLEAEELY-EEMPHRGIVP-DTITYNSVIHGLCKQSRLDEATQMFDSMGSKSFS 544

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
            + +T++T+I    +    D+ +E F  M + G++ + +TY  ++  + K G +   L +
Sbjct: 545 PNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIHGFRKVGNINGALDI 604

Query: 280 YERGVASGWKPDPI 293
           ++  +ASG  PD I
Sbjct: 605 FQEMMASGVYPDTI 618


>gi|302775582|ref|XP_002971208.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
 gi|300161190|gb|EFJ27806.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
          Length = 599

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 151/317 (47%), Gaps = 2/317 (0%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           P++ +    +L L       ++   F+ ++++++ P ++  Y + +  L    +     +
Sbjct: 148 PNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDI-PPDSWSYGILIDGLAKAGKLNEAYK 206

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L   M+ + I    +TY+ +I         DEA+E F+ M   G  P   T++ ++D + 
Sbjct: 207 LFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHC 266

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           K GK++E   L +R    G  PD + +S L          D  R++L++M     +P +V
Sbjct: 267 KRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVV 326

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
             NTL+  + KAG+   AR + D MV SG +PD  T   L+  + +A   + A EL   M
Sbjct: 327 TQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDM 386

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
                  + + Y  L++       + EA  +F  MK S  C P+ ++YTA++  + S G 
Sbjct: 387 VARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMK-SSGCAPNLFTYTALILGFCSAGQ 445

Query: 449 VDNAIELFEEMSELGVA 465
           VD  ++LF EM   G++
Sbjct: 446 VDGGLKLFGEMVCAGIS 462



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/312 (26%), Positives = 149/312 (47%), Gaps = 3/312 (0%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           Q+ +EM + +I  D+ +Y  +I    +    +EA + F+RM  +G+ P  VTY+ ++   
Sbjct: 171 QVFHEMEAKDIPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGM 230

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
             +  ++E L L++   + G +P    F++L     + G  D    +L+ M   G  P++
Sbjct: 231 CLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDV 290

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
           V Y+TL+  +    +   AR L ++MV+    P   T   LI    KA   K+A E+ + 
Sbjct: 291 VTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDA 350

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           M  +    D + YNTL++     G  E A  L  DM ++    P+  +YTA+++      
Sbjct: 351 MVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDM-VARGLAPNVVTYTALVSGLCKAN 409

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCG 507
            +  A  +F +M   G A N+   T LI     A ++D  +++FG  +  G+ PD  + G
Sbjct: 410 RLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYG 469

Query: 508 CLLSVVSLCETS 519
            L     LC++ 
Sbjct: 470 TL--AAELCKSG 479



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 144/316 (45%), Gaps = 1/316 (0%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
           T+ Y   +  L     F    +L  +M         +TY+ +I  + +  + +EA +  +
Sbjct: 45  TVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIK 104

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
           +M + G +PD VTY+ ++D   KS +VEE L L+      G  P+  + + +     +  
Sbjct: 105 KMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQS 164

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
             D    V  EM++  + P+   Y  L++ + KAGK   A  LF  M++SG+TP   T  
Sbjct: 165 KIDQACQVFHEMEAKDIPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYN 224

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
            +I     A    +ALEL++ MR          +N L++     G ++EA RL + M   
Sbjct: 225 VVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMT-D 283

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
           D   PD  +Y+ +++   S   VD+A  L E+M +      V+    LI  L KA RI +
Sbjct: 284 DGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKE 343

Query: 487 LVRVFGVSIDRGVKPD 502
              V    +  G  PD
Sbjct: 344 AREVLDAMVSSGQSPD 359



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 147/313 (46%), Gaps = 3/313 (0%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           Y + +  L    +      L  +++ + +    + Y+++I      N FD+A E F  M 
Sbjct: 13  YGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMN 72

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
           + G  P  VTY+ ++D   K G +EE   L ++ +  G  PD + ++ +     +S   +
Sbjct: 73  RRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVE 132

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               +  EM+ LG  PN   +NT++  + +  K   A  +F EM    + PD  +   LI
Sbjct: 133 EALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIPPDSWSYGILI 192

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLN-MCADIGLVEEAERLFEDMKLSDY 428
               KA    +A +L++RM ++      + YN +++ MC    L +EA  LF+ M+ S  
Sbjct: 193 DGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTL-DEALELFKSMR-SKG 250

Query: 429 CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLV 488
           C+P  +++  +++ +   G +D A  L + M++ G   +V+  + LI  L    R+DD  
Sbjct: 251 CRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDAR 310

Query: 489 RVFGVSIDRGVKP 501
            +    + R  KP
Sbjct: 311 HLLEDMVKRQCKP 323



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 144/317 (45%), Gaps = 1/317 (0%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + YN  M  L    + +    L NEM       +  +++TII    + +  D+A + F
Sbjct: 114 DVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVF 173

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
             M    + PD  +Y  ++D  AK+GK+ E   L++R + SG  P  + ++V+      +
Sbjct: 174 HEMEAKDIPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLA 233

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
              D    + + M+S G +P+   +N L++A  K GK   A  L   M + G  PD  T 
Sbjct: 234 YTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTY 293

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
           + LI          DA  L E M + +     +  NTL++     G ++EA  + + M +
Sbjct: 294 STLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAM-V 352

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
           S    PD  +Y  +++ +   G  + A EL  +M   G+A NV+  T L+  L KA R+ 
Sbjct: 353 SSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLP 412

Query: 486 DLVRVFGVSIDRGVKPD 502
           +   VF      G  P+
Sbjct: 413 EACGVFAQMKSSGCAPN 429



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 125/254 (49%), Gaps = 1/254 (0%)

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M +  + PD  +Y  ++D  AK+GK+ +  +L+++ + SG  P  +A++ L      +  
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
           +D  R +  +M   G  P+ V YN +++A  K G    A  L  +M+E G  PD  T   
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 120

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           ++    K+   ++AL L+  M       +   +NT++        +++A ++F +M+  D
Sbjct: 121 VMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKD 180

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
              PD++SY  +++     G ++ A +LF+ M + G+  + +    +I  +  A  +D+ 
Sbjct: 181 I-PPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEA 239

Query: 488 VRVFGVSIDRGVKP 501
           + +F     +G +P
Sbjct: 240 LELFKSMRSKGCRP 253



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/290 (22%), Positives = 129/290 (44%), Gaps = 1/290 (0%)

Query: 213 MVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK 272
           M    +  D+ +Y  +I    +    ++A   F+++  +G+ P  V Y++++     +  
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 273 VEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNT 332
            ++   L+      G  P P+ ++V+     + G  +    ++++M   G  P++V YNT
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 120

Query: 333 LLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENK 392
           +++ + K+ +   A  LF+EM   G TP+ ++   +I    +      A +++  M    
Sbjct: 121 VMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKD 180

Query: 393 WPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNA 452
            P D   Y  L++  A  G + EA +LF+ M L     P   +Y  +++       +D A
Sbjct: 181 IPPDSWSYGILIDGLAKAGKLNEAYKLFQRM-LDSGITPSAVTYNVVIHGMCLAYTLDEA 239

Query: 453 IELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           +ELF+ M   G   +      LI    K  ++D+  R+     D G  PD
Sbjct: 240 LELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPD 289



 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 122/289 (42%), Gaps = 13/289 (4%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
            L  +MV  + +   +T +T+I    +     EA E  + M  +G  PD VTY+ ++  +
Sbjct: 311 HLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGH 370

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            ++G+ E    L    VA G  P+ + ++ L     ++        V  +MKS G  PNL
Sbjct: 371 CRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNL 430

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW-- 385
             Y  L+     AG+      LF EMV +G++PD      L     K+  +  ALE+   
Sbjct: 431 FTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILRE 490

Query: 386 --ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM-KLSDYCKPDN-YSYTAMLN 441
             E +R   W  +  +Y   ++   + G +E A     DM +      P+   S  A L 
Sbjct: 491 GRESLRSEAWGDE--VYRFAVDGLLEAGKMEMALGFVRDMVRGGQLPAPERCASLVAGLC 548

Query: 442 IYGSGGNVDNAIELFEEMSELGVAINVMGCTC--LIQCLGKARRIDDLV 488
             G GG    A  + EE+ +L       G     + + +GK   I+D V
Sbjct: 549 KSGQGG---EARAVLEEIMDLAYGGKARGKAAKFVEEMVGKGYEIEDAV 594



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 95/205 (46%), Gaps = 2/205 (0%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + YN  +       Q +   +L ++MV+  +  + +TY+ +++   + N   EA   F
Sbjct: 359 DVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVF 418

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
            +M  +G  P+  TY+A++  +  +G+V+  L L+   V +G  PD + +  L     +S
Sbjct: 419 AQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKS 478

Query: 306 GDYDGIRYVLQEMK-SLGVQP-NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
           G       +L+E + SL  +     VY   ++ + +AGK  +A     +MV  G  P  +
Sbjct: 479 GRSARALEILREGRESLRSEAWGDEVYRFAVDGLLEAGKMEMALGFVRDMVRGGQLPAPE 538

Query: 364 TLTALIKIYGKARWAKDALELWERM 388
              +L+    K+    +A  + E +
Sbjct: 539 RCASLVAGLCKSGQGGEARAVLEEI 563


>gi|449525162|ref|XP_004169587.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g73710-like [Cucumis sativus]
          Length = 1026

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 147/293 (50%), Gaps = 2/293 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D + Y+ +I    +  L+++A   F+ M   G  PDE TY++++ +++    V+E   L 
Sbjct: 530 DVMEYNVMIKAYGKAELYEKAFLLFKSMKNRGTWPDECTYNSLIQMFSGGDLVDEARRLL 589

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
                 G+KP    FS +   +   G       V   M    V+PN ++Y  L+    + 
Sbjct: 590 TEMQRMGFKPTCQTFSAVIASYARLGLMSDAVEVYDMMVHADVEPNEILYGVLVNGFAEI 649

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G+   A   F  M +SG+  ++  LT+LIK + K    +DA  ++ RM+  +   D I  
Sbjct: 650 GQAEEALKYFRLMEKSGIAENQIVLTSLIKAFSKVGSLEDARRIYNRMKNMEDGADTIAS 709

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           N+++N+ AD+G+V EA+++FED++   Y   D  S+  M+ +Y + G +D AIE+ EEM 
Sbjct: 710 NSMINLYADLGMVSEAKQVFEDLRERGYA--DGVSFATMIYLYKNIGMLDEAIEVAEEMK 767

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVV 513
           E G+  +      +I+C     ++ +   +    + R + PD+R    L +++
Sbjct: 768 ESGLLRDATSFRKVIECYAINGQVRECGELLHEMVTRKLLPDNRTFNVLFTIL 820



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/354 (23%), Positives = 145/354 (40%), Gaps = 56/354 (15%)

Query: 159 LILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEI 218
           +IL     W++    F W KSQ  +    I YN+ +++L   +++  +    NEM  N  
Sbjct: 133 VILKEQSRWERVIQVFQWFKSQKDYVPNVIHYNIVLRTLGQAQKWDELRLCWNEMAEN-- 190

Query: 219 ELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS 278
                                            G++P   TY  ++DVY K G V+E L 
Sbjct: 191 ---------------------------------GVVPTNNTYGMLIDVYGKVGLVKEALL 217

Query: 279 LYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMG 338
             +     G  PD +  + + ++  ++G++D      ++     V+ N    N+ +E  G
Sbjct: 218 WIKHMTVRGIFPDEVTMNTVVRVLKDAGEFDSADKFYKDWCRGLVELNDFDLNSRVEDFG 277

Query: 339 --KAGKPGLARSL-FDEMVESGL-TPDEK----------------TLTALIKIYGKARWA 378
              A +P   +     E+   G   P+ K                T   LI +YGKA   
Sbjct: 278 VNSAVEPITPKHFCXTELFRIGTRIPNRKVSPEVDNCVRKPRLTSTYNTLIDLYGKAGRL 337

Query: 379 KDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTA 438
           KDA  ++  M      MD I +NT++  C   G + EAE L   M+      PD  +Y  
Sbjct: 338 KDAANVFGEMLTTGISMDTITFNTMIYTCGSHGHLAEAETLLLKME-ERGLSPDTKTYNI 396

Query: 439 MLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFG 492
            L++Y + GN+D A++ +  + E+G+  +V+    L+  L +   ++D+  V  
Sbjct: 397 FLSLYANDGNIDGALKCYRRIREVGLFPDVVTHRALLHVLSERNMVEDVENVIA 450



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 92/392 (23%), Positives = 165/392 (42%), Gaps = 51/392 (13%)

Query: 212 EMVSNEIELDNITYSTII-TCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
           EM++  I +D IT++T+I TC    +L  EA     +M + GL PD  TY+  L +YA  
Sbjct: 346 EMLTTGISMDTITFNTMIYTCGSHGHL-AEAETLLLKMEERGLSPDTKTYNIFLSLYAND 404

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMK---------SL 321
           G ++  L  Y R    G  PD +    L  +  E    + +  V+ EM+         SL
Sbjct: 405 GNIDGALKCYRRIREVGLFPDVVTHRALLHVLSERNMVEDVENVIAEMEKSHILLDEHSL 464

Query: 322 GVQPNLVVYNTLLEA---------MGKAGKPGLARSLFDEMVESGL-------------- 358
                + +   LL+          +     P ++ ++ D   E GL              
Sbjct: 465 PRVIKMYINEGLLDRAKILLEKYRLDTELSPRISAAIIDAYAEKGLWFEAESIFLWKRDL 524

Query: 359 ---TPDEKTLTALIKIYGKARWAKDALELWERMR-ENKWPMDFILYNTLLNMCADIGLVE 414
                D      +IK YGKA   + A  L++ M+    WP D   YN+L+ M +   LV+
Sbjct: 525 AGKKXDVMEYNVMIKAYGKAELYEKAFLLFKSMKNRGTWP-DECTYNSLIQMFSGGDLVD 583

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
           EA RL  +M+   + KP   +++A++  Y   G + +A+E+++ M    V  N +    L
Sbjct: 584 EARRLLTEMQRMGF-KPTCQTFSAVIASYARLGLMSDAVEVYDMMVHADVEPNEILYGVL 642

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI-------- 526
           +    +  + ++ ++ F +    G+  +  +   L+   S   + ED  ++         
Sbjct: 643 VNGFAEIGQAEEALKYFRLMEKSGIAENQIVLTSLIKAFSKVGSLEDARRIYNRMKNMED 702

Query: 527 ---TCLQQANPKLVAFLNLIEDNSTGFENIKE 555
              T    +   L A L ++ +    FE+++E
Sbjct: 703 GADTIASNSMINLYADLGMVSEAKQVFEDLRE 734



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 80/381 (20%), Positives = 154/381 (40%), Gaps = 40/381 (10%)

Query: 165 KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNIT 224
           + ++K++  F  +K++  +P E   YN  ++    G       +L  EM     +    T
Sbjct: 545 ELYEKAFLLFKSMKNRGTWPDECT-YNSLIQMFSGGDLVDEARRLLTEMQRMGFKPTCQT 603

Query: 225 YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
           +S +I    R  L  +A+E ++ M    + P+E+ Y  +++ +A+ G+ EE L  +    
Sbjct: 604 FSAVIASYARLGLMSDAVEVYDMMVHADVEPNEILYGVLVNGFAEIGQAEEALKYFRLME 663

Query: 285 ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344
            SG   + I  + L K F + G  +  R +   MK++    + +  N+++      G   
Sbjct: 664 KSGIAENQIVLTSLIKAFSKVGSLEDARRIYNRMKNMEDGADTIASNSMINLYADLGMVS 723

Query: 345 LARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
            A+ +F+++ E G   D  +   +I +Y       +A+E+ E M+E+    D   +  ++
Sbjct: 724 EAKQVFEDLRERGYA-DGVSFATMIYLYKNIGMLDEAIEVAEEMKESGLLRDATSFRKVI 782

Query: 405 NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG------------------ 446
              A  G V E   L  +M ++    PDN ++  +  I   G                  
Sbjct: 783 ECYAINGQVRECGELLHEM-VTRKLLPDNRTFNVLFTILKKGVIPLEAVSQLESAFHEEK 841

Query: 447 ---------------GNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
                          G   +A+E  +   +  V ++       I   G A +ID  + +F
Sbjct: 842 TYARQAIIAAVFSGLGLHASALESCDTFLKAEVQLDSFAYNVAIYAYGAAEKIDKALNIF 901

Query: 492 GVSIDRGVKPD----DRLCGC 508
               D+ +KPD      L GC
Sbjct: 902 MKMKDQNLKPDLVTYINLVGC 922



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 82/374 (21%), Positives = 156/374 (41%), Gaps = 48/374 (12%)

Query: 203 FQLIEQLANEMVSNEIELDNI--------TYSTIITCAKRCNLFDEAIEWFERMYKTGLM 254
           F++  ++ N  VS E+  DN         TY+T+I    +     +A   F  M  TG+ 
Sbjct: 296 FRIGTRIPNRKVSPEV--DNCVRKPRLTSTYNTLIDLYGKAGRLKDAANVFGEMLTTGIS 353

Query: 255 PDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYV 314
            D +T++ ++      G + E  +L  +    G  PD   +++   ++   G+ DG    
Sbjct: 354 MDTITFNTMIYTCGSHGHLAEAETLLLKMEERGLSPDTKTYNIFLSLYANDGNIDGALKC 413

Query: 315 LQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIY-- 372
            + ++ +G+ P++V +  LL  + +        ++  EM +S +  DE +L  +IK+Y  
Sbjct: 414 YRRIREVGLFPDVVTHRALLHVLSERNMVEDVENVIAEMEKSHILLDEHSLPRVIKMYIN 473

Query: 373 -GKARWAKDALE---------------------------------LWERMRENKWPMDFI 398
            G    AK  LE                                 LW+R    K   D +
Sbjct: 474 EGLLDRAKILLEKYRLDTELSPRISAAIIDAYAEKGLWFEAESIFLWKRDLAGK-KXDVM 532

Query: 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458
            YN ++       L E+A  LF+ MK +    PD  +Y +++ ++  G  VD A  L  E
Sbjct: 533 EYNVMIKAYGKAELYEKAFLLFKSMK-NRGTWPDECTYNSLIQMFSGGDLVDEARRLLTE 591

Query: 459 MSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCET 518
           M  +G        + +I    +   + D V V+ + +   V+P++ L G L++  +    
Sbjct: 592 MQRMGFKPTCQTFSAVIASYARLGLMSDAVEVYDMMVHADVEPNEILYGVLVNGFAEIGQ 651

Query: 519 SEDVGKVITCLQQA 532
           +E+  K    ++++
Sbjct: 652 AEEALKYFRLMEKS 665



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 100/239 (41%), Gaps = 33/239 (13%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D ++++T+I   K   + DEAIE  E M ++GL+ D  ++  +++ YA +G+V E   L 
Sbjct: 739 DGVSFATMIYLYKNIGMLDEAIEVAEEMKESGLLRDATSFRKVIECYAINGQVRECGELL 798

Query: 281 ERGVASGWKPDPIAFSVLGKM-----------------FGESGDYDGIRYVLQEMKSLG- 322
              V     PD   F+VL  +                 F E   Y     +      LG 
Sbjct: 799 HEMVTRKLLPDNRTFNVLFTILKKGVIPLEAVSQLESAFHEEKTYARQAIIAAVFSGLGL 858

Query: 323 ---------------VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
                          VQ +   YN  + A G A K   A ++F +M +  L PD  T   
Sbjct: 859 HASALESCDTFLKAEVQLDSFAYNVAIYAYGAAEKIDKALNIFMKMKDQNLKPDLVTYIN 918

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
           L+  YGKA   +   +++ +++  +  ++  L+  ++N        +  + + ++MK S
Sbjct: 919 LVGCYGKAGMIEGVKQIYSQLKYGEIELNKSLFFAIINTFRSADRYDLVQMVKQEMKFS 977



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 62/300 (20%), Positives = 121/300 (40%), Gaps = 64/300 (21%)

Query: 325 PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384
           PN++ YN +L  +G+A K    R  ++EM E+G+ P   T   LI +YGK    K+AL  
Sbjct: 159 PNVIHYNIVLRTLGQAQKWDELRLCWNEMAENGVVPTNNTYGMLIDVYGKVGLVKEALLW 218

Query: 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED-----MKLSDY----------- 428
            + M       D +  NT++ +  D G  + A++ ++D     ++L+D+           
Sbjct: 219 IKHMTVRGIFPDEVTMNTVVRVLKDAGEFDSADKFYKDWCRGLVELNDFDLNSRVEDFGV 278

Query: 429 ------CKPDNY--------------------------------SYTAMLNIYGSGGNVD 450
                   P ++                                +Y  ++++YG  G + 
Sbjct: 279 NSAVEPITPKHFCXTELFRIGTRIPNRKVSPEVDNCVRKPRLTSTYNTLIDLYGKAGRLK 338

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
           +A  +F EM   G++++ +    +I   G    + +   +     +RG+ PD +     L
Sbjct: 339 DAANVFGEMLTTGISMDTITFNTMIYTCGSHGHLAEAETLLLKMEERGLSPDTKTYNIFL 398

Query: 511 SVVSLCETSEDVGKVITCLQQAN-----PKLVAFLNLIEDNSTGFENIKEEFRNVIKDTE 565
           S+ +      ++   + C ++       P +V    L+   S    N+ E+  NVI + E
Sbjct: 399 SLYA---NDGNIDGALKCYRRIREVGLFPDVVTHRALLHVLSE--RNMVEDVENVIAEME 453



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 72/369 (19%), Positives = 136/369 (36%), Gaps = 69/369 (18%)

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           P    F  V     R G     +E + + MV  ++E + I Y  ++         +EA++
Sbjct: 599 PTCQTFSAVIASYARLGLMSDAVE-VYDMMVHADVEPNEILYGVLVNGFAEIGQAEEALK 657

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER--------------------- 282
           +F  M K+G+  +++  ++++  ++K G +E+   +Y R                     
Sbjct: 658 YFRLMEKSGIAENQIVLTSLIKAFSKVGSLEDARRIYNRMKNMEDGADTIASNSMINLYA 717

Query: 283 --GVASGWK-----------PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVV 329
             G+ S  K            D ++F+ +  ++   G  D    V +EMK  G+  +   
Sbjct: 718 DLGMVSEAKQVFEDLRERGYADGVSFATMIYLYKNIGMLDEAIEVAEEMKESGLLRDATS 777

Query: 330 YNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK--------------- 374
           +  ++E     G+      L  EMV   L PD +T   L  I  K               
Sbjct: 778 FRKVIECYAINGQVRECGELLHEMVTRKLLPDNRTFNVLFTILKKGVIPLEAVSQLESAF 837

Query: 375 ------ARWA------------KDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEA 416
                 AR A              ALE  +   + +  +D   YN  +        +++A
Sbjct: 838 HEEKTYARQAIIAAVFSGLGLHASALESCDTFLKAEVQLDSFAYNVAIYAYGAAEKIDKA 897

Query: 417 ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
             +F  MK  +  KPD  +Y  ++  YG  G ++   +++ ++    + +N      +I 
Sbjct: 898 LNIFMKMKDQN-LKPDLVTYINLVGCYGKAGMIEGVKQIYSQLKYGEIELNKSLFFAIIN 956

Query: 477 CLGKARRID 485
               A R D
Sbjct: 957 TFRSADRYD 965



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 49/103 (47%)

Query: 217 EIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV 276
           E++LD+  Y+  I         D+A+  F +M    L PD VTY  ++  Y K+G +E V
Sbjct: 873 EVQLDSFAYNVAIYAYGAAEKIDKALNIFMKMKDQNLKPDLVTYINLVGCYGKAGMIEGV 932

Query: 277 LSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMK 319
             +Y +      + +   F  +   F  +  YD ++ V QEMK
Sbjct: 933 KQIYSQLKYGEIELNKSLFFAIINTFRSADRYDLVQMVKQEMK 975


>gi|226528493|ref|NP_001147073.1| ATP binding protein [Zea mays]
 gi|195607078|gb|ACG25369.1| ATP binding protein [Zea mays]
          Length = 655

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 96/371 (25%), Positives = 169/371 (45%), Gaps = 40/371 (10%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + YN  +K L   +++  +++L  EMV      + +T++T+I+   R  LF+   E  
Sbjct: 226 DVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVL 285

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP--------------- 290
            +M + G  PD   Y+ I+D   K G ++    +  R  + G KP               
Sbjct: 286 AQMAEHGCTPDIRMYATIIDGICKEGHLKVAHEILNRMPSYGLKPNVVCYNTLLKGLCSA 345

Query: 291 --------------------DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
                               D + F++L   F ++G  D +  +L++M   G  P+++ Y
Sbjct: 346 ERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLVHGCMPDVITY 405

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA-RWAKDALELWERMR 389
            T++    K G    A  L   M   G  P+  + T ++K    A RW  DA +L  +M 
Sbjct: 406 TTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWV-DAEDLMSQMI 464

Query: 390 ENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNV 449
           +   P++ I +NTL+N     GLVE+A  L + M L + C PD  SY+ +++  G  G  
Sbjct: 465 QQGCPLNPITFNTLINFLCKKGLVEQAIELLKQM-LVNGCSPDLISYSTVIDGLGKAGKT 523

Query: 450 DNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCL 509
           D A+EL   M   G++ N +  + +   L +  RI+ ++++F    D  ++ D  L   +
Sbjct: 524 DEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAV 583

Query: 510 LSVVSLCETSE 520
           +S  SLC+  E
Sbjct: 584 IS--SLCKRGE 592



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/329 (23%), Positives = 147/329 (44%), Gaps = 37/329 (11%)

Query: 170 SYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTII 229
           ++   N + S  L P   + YN  +K L    +++  E+L  EM   +  LD++T++ ++
Sbjct: 316 AHEILNRMPSYGLKP-NVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILV 374

Query: 230 TCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWK 289
               +  L D  IE  E+M   G MPD +TY+ +++ + K G ++E + L +   A G K
Sbjct: 375 DFFCQNGLVDRVIELLEQMLVHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCK 434

Query: 290 P-----------------------------------DPIAFSVLGKMFGESGDYDGIRYV 314
           P                                   +PI F+ L     + G  +    +
Sbjct: 435 PNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIEL 494

Query: 315 LQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK 374
           L++M   G  P+L+ Y+T+++ +GKAGK   A  L + MV  G++P+    +++     +
Sbjct: 495 LKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSR 554

Query: 375 ARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNY 434
                  +++++ +++     D +LYN +++     G  E A      M +S  C P+  
Sbjct: 555 EGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYM-VSSGCVPNES 613

Query: 435 SYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           +YT ++    S G V  A E+  E+   G
Sbjct: 614 TYTILIRGLASEGFVKEAQEMLTELCSKG 642



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/278 (25%), Positives = 123/278 (44%), Gaps = 1/278 (0%)

Query: 225 YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
           Y  I+  A R   F  A+   E ++  G   D    + +L+     G V++ L L     
Sbjct: 160 YHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDKALHLLRDLP 219

Query: 285 ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344
           + G +PD ++++ + K    +  +  ++ +++EM  +   PN+V +NTL+  + + G   
Sbjct: 220 SFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFE 279

Query: 345 LARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
               +  +M E G TPD +    +I    K    K A E+  RM       + + YNTLL
Sbjct: 280 RVHEVLAQMAEHGCTPDIRMYATIIDGICKEGHLKVAHEILNRMPSYGLKPNVVCYNTLL 339

Query: 405 NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
                    EE E L  +M   D C  D+ ++  +++ +   G VD  IEL E+M   G 
Sbjct: 340 KGLCSAERWEETEELLAEMFDKD-CPLDDVTFNILVDFFCQNGLVDRVIELLEQMLVHGC 398

Query: 465 AINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
             +V+  T +I    K   ID+ V +       G KP+
Sbjct: 399 MPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPN 436



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/302 (21%), Positives = 139/302 (46%), Gaps = 1/302 (0%)

Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS 261
             ++  ++ N M S  ++ + + Y+T++        ++E  E    M+      D+VT++
Sbjct: 312 HLKVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFN 371

Query: 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
            ++D + ++G V+ V+ L E+ +  G  PD I ++ +   F + G  D    +L+ M + 
Sbjct: 372 ILVDFFCQNGLVDRVIELLEQMLVHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTAC 431

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
           G +PN + Y  +L+ +  A +   A  L  +M++ G   +  T   LI    K    + A
Sbjct: 432 GCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQA 491

Query: 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
           +EL ++M  N    D I Y+T+++     G  +EA  L   M ++    P+   Y+++ +
Sbjct: 492 IELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVM-VNKGMSPNTIIYSSIAS 550

Query: 442 IYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
                G ++  I++F+ + +  +  + +    +I  L K    +  +      +  G  P
Sbjct: 551 ALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVP 610

Query: 502 DD 503
           ++
Sbjct: 611 NE 612



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 55/249 (22%), Positives = 102/249 (40%), Gaps = 1/249 (0%)

Query: 255 PDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYV 314
           P+  TY  ++      G++ + L++ +     G  P P  + V+ +     G +     V
Sbjct: 120 PNAYTYFPVVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRV 179

Query: 315 LQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK 374
           L+++ + G   ++   N +L A+   G    A  L  ++   G  PD  +  A++K    
Sbjct: 180 LEDLHARGCALDVGNCNLVLNAICDQGSVDKALHLLRDLPSFGCEPDVVSYNAVLKGLCM 239

Query: 375 ARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNY 434
           A+      EL E M     P + + +NTL++     GL E    +   M     C PD  
Sbjct: 240 AKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMA-EHGCTPDIR 298

Query: 435 SYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVS 494
            Y  +++     G++  A E+   M   G+  NV+    L++ L  A R ++   +    
Sbjct: 299 MYATIIDGICKEGHLKVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEM 358

Query: 495 IDRGVKPDD 503
            D+    DD
Sbjct: 359 FDKDCPLDD 367



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 75/183 (40%), Gaps = 1/183 (0%)

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382
           V PN   Y  ++ A+   G+   A ++ DEM   G  P       +++   +    + A+
Sbjct: 118 VPPNAYTYFPVVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAV 177

Query: 383 ELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNI 442
            + E +      +D    N +LN   D G V++A  L  D+  S  C+PD  SY A+L  
Sbjct: 178 RVLEDLHARGCALDVGNCNLVLNAICDQGSVDKALHLLRDLP-SFGCEPDVVSYNAVLKG 236

Query: 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
                      EL EEM  +    N++    LI  L +    + +  V     + G  PD
Sbjct: 237 LCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMAEHGCTPD 296

Query: 503 DRL 505
            R+
Sbjct: 297 IRM 299


>gi|242086791|ref|XP_002439228.1| hypothetical protein SORBIDRAFT_09g002630 [Sorghum bicolor]
 gi|241944513|gb|EES17658.1| hypothetical protein SORBIDRAFT_09g002630 [Sorghum bicolor]
          Length = 653

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 154/315 (48%), Gaps = 5/315 (1%)

Query: 190 YNVTMKSLRFGRQFQLIEQLA--NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           YN  +  L   R+F++ E  A   +MV   ++ + ITY+TI+    +      A     R
Sbjct: 237 YNAVI--LALCREFRMQEVFAVVGDMVGRGLQPNVITYTTIVNAFCKAGELRMACAILAR 294

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M  TG  P+  T++A++      G+V + L +++  VA GW P  ++++VL +     GD
Sbjct: 295 MVITGCTPNVATFTALVGGLFNDGRVHDALDMWKCMVAEGWAPSTVSYNVLIRGLCSVGD 354

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
             G   VL +M+  G  PN   Y+TL++   KAG    A S++++M  SG  P+    T 
Sbjct: 355 LKGASSVLNDMEQHGCFPNARTYSTLIDGFSKAGDLDGAISIWNDMTRSGCKPNVVVYTN 414

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           ++ ++ K      A  L ++M     P + + +NTL+    +   V  A  +F +M+   
Sbjct: 415 MVGVFCKKLMFNQAESLIDKMLVENCPPNTVTFNTLIRSLCNCRRVGRALGVFHEMRRHG 474

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
            C P+  +Y  +L+     GN  +A+++  EM   G+ ++++    ++  L + R   + 
Sbjct: 475 -CPPNGRTYNELLHGLFREGNCGDALQMVIEMQNHGIELSLVTYNTVVSGLCQMRMGREA 533

Query: 488 VRVFGVSIDRGVKPD 502
           +   G  I RG++PD
Sbjct: 534 MFFVGRMIVRGIQPD 548



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 68/286 (23%), Positives = 130/286 (45%), Gaps = 6/286 (2%)

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           P     YN  + +L        +  +   M  + ++ +  TY+ ++    + +    A +
Sbjct: 131 PTAPRLYNHLIDALLRENMVGAVALVCGNMRKDGVQPNVFTYNLLVRALCQNHRVGAARK 190

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
             + M   G  PD+VTY  I+      G+V+E        V S   P   +++ +     
Sbjct: 191 MLDEMATKGCPPDDVTYGTIVSALCTLGRVDEATE-----VLSAAPPVAASYNAVILALC 245

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
                  +  V+ +M   G+QPN++ Y T++ A  KAG+  +A ++   MV +G TP+  
Sbjct: 246 REFRMQEVFAVVGDMVGRGLQPNVITYTTIVNAFCKAGELRMACAILARMVITGCTPNVA 305

Query: 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
           T TAL+          DAL++W+ M    W    + YN L+     +G ++ A  +  DM
Sbjct: 306 TFTALVGGLFNDGRVHDALDMWKCMVAEGWAPSTVSYNVLIRGLCSVGDLKGASSVLNDM 365

Query: 424 KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVM 469
           +    C P+  +Y+ +++ +   G++D AI ++ +M+  G   NV+
Sbjct: 366 E-QHGCFPNARTYSTLIDGFSKAGDLDGAISIWNDMTRSGCKPNVV 410



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/315 (22%), Positives = 136/315 (43%), Gaps = 6/315 (1%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN+ +++L    +     ++ +EM +     D++TY TI++        DEA E      
Sbjct: 172 YNLLVRALCQNHRVGAARKMLDEMATKGCPPDDVTYGTIVSALCTLGRVDEATEVL---- 227

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
            +   P   +Y+A++    +  +++EV ++    V  G +P+ I ++ +   F ++G+  
Sbjct: 228 -SAAPPVAASYNAVILALCREFRMQEVFAVVGDMVGRGLQPNVITYTTIVNAFCKAGELR 286

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               +L  M   G  PN+  +  L+  +   G+   A  ++  MV  G  P   +   LI
Sbjct: 287 MACAILARMVITGCTPNVATFTALVGGLFNDGRVHDALDMWKCMVAEGWAPSTVSYNVLI 346

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
           +        K A  +   M ++    +   Y+TL++  +  G ++ A  ++ DM  S  C
Sbjct: 347 RGLCSVGDLKGASSVLNDMEQHGCFPNARTYSTLIDGFSKAGDLDGAISIWNDMTRSG-C 405

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
           KP+   YT M+ ++      + A  L ++M       N +    LI+ L   RR+   + 
Sbjct: 406 KPNVVVYTNMVGVFCKKLMFNQAESLIDKMLVENCPPNTVTFNTLIRSLCNCRRVGRALG 465

Query: 490 VFGVSIDRGVKPDDR 504
           VF      G  P+ R
Sbjct: 466 VFHEMRRHGCPPNGR 480



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 68/317 (21%), Positives = 131/317 (41%), Gaps = 36/317 (11%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
            T+ YNV ++ L      +    + N+M  +    +  TYST+I    +    D AI  +
Sbjct: 338 STVSYNVLIRGLCSVGDLKGASSVLNDMEQHGCFPNARTYSTLIDGFSKAGDLDGAISIW 397

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
             M ++G  P+ V Y+ ++ V+ K     +  SL +                  KM  E+
Sbjct: 398 NDMTRSGCKPNVVVYTNMVGVFCKKLMFNQAESLID------------------KMLVEN 439

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
                              PN V +NTL+ ++    + G A  +F EM   G  P+ +T 
Sbjct: 440 -----------------CPPNTVTFNTLIRSLCNCRRVGRALGVFHEMRRHGCPPNGRTY 482

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
             L+    +     DAL++   M+ +   +  + YNT+++    + +  EA      M +
Sbjct: 483 NELLHGLFREGNCGDALQMVIEMQNHGIELSLVTYNTVVSGLCQMRMGREAMFFVGRMIV 542

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
               +PD +++TA+++ Y   G V  A  +   M+ +    N++  T L+  L    +++
Sbjct: 543 RGI-QPDAFTFTAIIHAYCKEGEVRMAAWILGAMNVVNCGRNILVYTILMAELCNQDKLE 601

Query: 486 DLVRVFGVSIDRGVKPD 502
           D +      +  G+ P+
Sbjct: 602 DAMVYLLKMLYEGIYPN 618



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 60/261 (22%), Positives = 105/261 (40%), Gaps = 11/261 (4%)

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIA---FSVLGKM 301
            + M   G+   E    A +  +A++G  +  L  + R V       P A   ++ L   
Sbjct: 84  LQEMRLRGVPCTEGALVAAVGAFARAGAPDRALKTFYRAVHDLGCARPTAPRLYNHLIDA 143

Query: 302 FGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD 361
                    +  V   M+  GVQPN+  YN L+ A+ +  + G AR + DEM   G  PD
Sbjct: 144 LLRENMVGAVALVCGNMRKDGVQPNVFTYNLLVRALCQNHRVGAARKMLDEMATKGCPPD 203

Query: 362 EKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYN-TLLNMCADIGLVEEAERLF 420
           + T   ++          +A E+      +  P     YN  +L +C +  + +E   + 
Sbjct: 204 DVTYGTIVSALCTLGRVDEATEVL-----SAAPPVAASYNAVILALCREFRM-QEVFAVV 257

Query: 421 EDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK 480
            DM +    +P+  +YT ++N +   G +  A  +   M   G   NV   T L+  L  
Sbjct: 258 GDM-VGRGLQPNVITYTTIVNAFCKAGELRMACAILARMVITGCTPNVATFTALVGGLFN 316

Query: 481 ARRIDDLVRVFGVSIDRGVKP 501
             R+ D + ++   +  G  P
Sbjct: 317 DGRVHDALDMWKCMVAEGWAP 337



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 67/131 (51%), Gaps = 2/131 (1%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           Q+  EM ++ IEL  +TY+T+++   +  +  EA+ +  RM   G+ PD  T++AI+  Y
Sbjct: 500 QMVIEMQNHGIELSLVTYNTVVSGLCQMRMGREAMFFVGRMIVRGIQPDAFTFTAIIHAY 559

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVL-GKMFGESGDYDGIRYVLQEMKSLGVQPN 326
            K G+V     +           + + +++L  ++  +    D + Y+L+ +   G+ PN
Sbjct: 560 CKEGEVRMAAWILGAMNVVNCGRNILVYTILMAELCNQDKLEDAMVYLLKMLYE-GIYPN 618

Query: 327 LVVYNTLLEAM 337
            V +N L+  +
Sbjct: 619 TVTWNVLVRGV 629



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 83/206 (40%), Gaps = 9/206 (4%)

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVE--SG 357
           +    +GD DG++  LQEM+  GV          + A  +AG P  A   F   V     
Sbjct: 69  RRLAAAGDVDGVQLELQEMRLRGVPCTEGALVAAVGAFARAGAPDRALKTFYRAVHDLGC 128

Query: 358 LTPDEKTL-TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEA 416
             P    L   LI    +         +   MR++    +   YN L+        V  A
Sbjct: 129 ARPTAPRLYNHLIDALLRENMVGAVALVCGNMRKDGVQPNVFTYNLLVRALCQNHRVGAA 188

Query: 417 ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
            ++ ++M  +  C PD+ +Y  +++   + G VD A E+      +  + N      +I 
Sbjct: 189 RKMLDEMA-TKGCPPDDVTYGTIVSALCTLGRVDEATEVLSAAPPVAASYNA-----VIL 242

Query: 477 CLGKARRIDDLVRVFGVSIDRGVKPD 502
            L +  R+ ++  V G  + RG++P+
Sbjct: 243 ALCREFRMQEVFAVVGDMVGRGLQPN 268


>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 154/314 (49%), Gaps = 1/314 (0%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN+ ++        ++      EM  N    + +TY+TII    +     EA +    M 
Sbjct: 206 YNILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMA 265

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
             GL P+ ++Y+ +++   + G+++E   + E      + PD + F+ L   +   G++ 
Sbjct: 266 LKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFH 325

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               +  EM   G+ PN+V Y TL+ +M KAG    A    D+M + GL P+ +T T LI
Sbjct: 326 QALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLI 385

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
             + +  + K A ++ + M EN +    I YN L+N    +G +E+A  L ++M    + 
Sbjct: 386 DGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFI 445

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
            PD  SY+ +++ +     ++ A +L  EM   G++ +V   + LIQ L K RR+ ++  
Sbjct: 446 -PDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCD 504

Query: 490 VFGVSIDRGVKPDD 503
           +F   +  G+ PD+
Sbjct: 505 LFQEMLSLGLPPDE 518



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 143/307 (46%), Gaps = 7/307 (2%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNL--FDEAIEWF 245
           I YNV +  L    Q +   ++  EM       D +T++T+I     CN+  F +A+   
Sbjct: 274 ISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLIN--GYCNVGNFHQALVLH 331

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
             M K GL P+ VTY+ +++   K+G +   +   ++    G  P+   ++ L   F + 
Sbjct: 332 AEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQ 391

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G       +++EM   G  P ++ YN L+      G+   A  L  EM+E G  PD  + 
Sbjct: 392 GFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSY 451

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN-MCADIGLVEEAERLFEDMK 424
           + +I  + + +  + A +L   M       D   Y++L+  +C    L E  + LF++M 
Sbjct: 452 STIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCD-LFQEM- 509

Query: 425 LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484
           LS    PD  +YT+++N Y   G++D A+ L +EM + G + +++    LI    K  R 
Sbjct: 510 LSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRT 569

Query: 485 DDLVRVF 491
            +  R+ 
Sbjct: 570 KEAKRLL 576



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 122/286 (42%), Gaps = 21/286 (7%)

Query: 180 QNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFD 239
           +N F    I YN  +       + +    L  EM+      D ++YSTII+   R    +
Sbjct: 406 ENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELE 465

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           +A +    M   G+ PD  TYS+++    K  ++ EV  L++  ++ G  PD + ++ L 
Sbjct: 466 KAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLI 525

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
             +   GD D    +  EM   G  P++V YN L+    K  +   A+ L  +++     
Sbjct: 526 NAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESV 585

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
           P+E T   LI       + K AL L +                    C   GL+ EA+R+
Sbjct: 586 PNEITYNTLIDNCNNLEF-KSALALMK------------------GFCMK-GLMNEADRV 625

Query: 420 FEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
            E M    Y K +   Y  +++ +   GN++ A  L++EM   G A
Sbjct: 626 LESMLQKGY-KLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFA 670


>gi|302806555|ref|XP_002985027.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
 gi|300147237|gb|EFJ13902.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
          Length = 443

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/325 (28%), Positives = 153/325 (47%), Gaps = 16/325 (4%)

Query: 201 RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTY 260
           ++ Q    L  ++ +N       TY+ ++    +    +EAI+   ++   G  PD VTY
Sbjct: 48  KKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTY 107

Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
           ++++D   K  +  E   L++   + G   D + ++ L +   ++G       V + M S
Sbjct: 108 TSLIDGLGKKKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTS 167

Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380
            G  P++V  +T+++ + KAG+ G A  +F  M   GL P+E   +ALI    KAR    
Sbjct: 168 QGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDC 227

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
           ALE+  +M++     D I YN L++     G V  A   F++M L   CKPD Y+Y  ++
Sbjct: 228 ALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVAAARAFFDEM-LEAGCKPDVYTYNILI 286

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
           + +   GN D A  +F++MS    + NV+    LI  L K R++      +    +RG  
Sbjct: 287 SGFCKAGNTDAACGVFDDMSSSRCSPNVVTYGTLISGLCKRRQLTKASLYYQHMKERGCP 346

Query: 501 PD--------DRLC-------GCLL 510
           PD        D LC       GC+L
Sbjct: 347 PDSFVYSSLVDGLCKSGKLEGGCML 371



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 142/284 (50%), Gaps = 2/284 (0%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           +L  EM S  + LD + Y+ +I    +     +A   ++ M   G +PD VT S ++D  
Sbjct: 125 KLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGL 184

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            K+G++   + +++   A G  P+ + +S L     ++   D    +L +MK     P+ 
Sbjct: 185 CKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDT 244

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
           + YN L++ + K+G    AR+ FDEM+E+G  PD  T   LI  + KA     A  +++ 
Sbjct: 245 ITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDD 304

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           M  ++   + + Y TL++       + +A   ++ MK    C PD++ Y+++++     G
Sbjct: 305 MSSSRCSPNVVTYGTLISGLCKRRQLTKASLYYQHMK-ERGCPPDSFVYSSLVDGLCKSG 363

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
            ++    LF+EM   GVA N    T LI  L KA R+D+ V +F
Sbjct: 364 KLEGGCMLFDEMERSGVA-NSQTRTRLIFHLCKANRVDEAVSLF 406



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 92/376 (24%), Positives = 161/376 (42%), Gaps = 9/376 (2%)

Query: 94  WVNPTKPRRSVLSLQRQKRSTYSYNPRVRDLKLFARKLNDCDNTEEA--FLRAITEIPHQ 151
           W+   K  +  ++L  +K +     P +         L      EEA   LR I +    
Sbjct: 43  WLAKNKKIQEAVALM-EKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCT 101

Query: 152 PTRENALLILNSLKFWQKS---YFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           P       +++ L   ++S   Y  F  + S+ L  ++T+ Y   ++ L    +      
Sbjct: 102 PDVVTYTSLIDGLGKKKRSFEAYKLFKEMASRGL-ALDTVCYTALIRGLLQAGKIPQASS 160

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           +   M S     D +T ST+I    +      A+  F+ M   GL P+EV YSA++    
Sbjct: 161 VYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLC 220

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           K+ K++  L +  +   +   PD I +++L     +SGD    R    EM   G +P++ 
Sbjct: 221 KARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVY 280

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            YN L+    KAG    A  +FD+M  S  +P+  T   LI    K R    A   ++ M
Sbjct: 281 TYNILISGFCKAGNTDAACGVFDDMSSSRCSPNVVTYGTLISGLCKRRQLTKASLYYQHM 340

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
           +E   P D  +Y++L++     G +E    LF++M+ S     ++ + T ++        
Sbjct: 341 KERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSGV--ANSQTRTRLIFHLCKANR 398

Query: 449 VDNAIELFEEMSELGV 464
           VD A+ LF  + + G+
Sbjct: 399 VDEAVSLFNAIRKEGM 414



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 116/262 (44%), Gaps = 36/262 (13%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           T+S +I    +  +  +A    +     G   D  TY+ I+D  AK+ K++E ++L E+ 
Sbjct: 1   TFSILINGLVKAGMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKI 60

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
            A+G                                     P +  YN LL  + K G+ 
Sbjct: 61  TANGC-----------------------------------TPTIATYNALLNGLCKMGRL 85

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
             A  L  ++V++G TPD  T T+LI   GK + + +A +L++ M      +D + Y  L
Sbjct: 86  EEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRSFEAYKLFKEMASRGLALDTVCYTAL 145

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           +      G + +A  +++ M  S  C PD  + + M++     G +  A+ +F+ M   G
Sbjct: 146 IRGLLQAGKIPQASSVYKTMT-SQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARG 204

Query: 464 VAINVMGCTCLIQCLGKARRID 485
           +A N +  + LI  L KAR++D
Sbjct: 205 LAPNEVVYSALIHGLCKARKMD 226



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 75/149 (50%), Gaps = 14/149 (9%)

Query: 211 NEMVSNEIELDNITYSTIIT--CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           ++M S+    + +TY T+I+  C +R     +A  +++ M + G  PD   YS+++D   
Sbjct: 303 DDMSSSRCSPNVVTYGTLISGLCKRR--QLTKASLYYQHMKERGCPPDSFVYSSLVDGLC 360

Query: 269 KSGKVEEVLSLYER----GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQ 324
           KSGK+E    L++     GVA+      + F +      ++   D    +   ++  G+ 
Sbjct: 361 KSGKLEGGCMLFDEMERSGVANSQTRTRLIFHLC-----KANRVDEAVSLFNAIRKEGM- 414

Query: 325 PNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
           P+   YN+++ A+ K+GK    ++++ EM
Sbjct: 415 PHPYAYNSIISALIKSGKVNEGQAVYQEM 443


>gi|414872431|tpg|DAA50988.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
          Length = 1627

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 100/363 (27%), Positives = 165/363 (45%), Gaps = 23/363 (6%)

Query: 130  KLNDCDNTEEAFLRAITEIPHQPTRENALLILNSLKFWQKS------YFFFNWIKSQNLF 183
            K ND       F     E+ HQ  R +       ++   K+      Y FF  ++ +   
Sbjct: 1267 KFNDAHGALSLF----EEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCR 1322

Query: 184  PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFD---- 239
            P +T+F N  +  L    +     +L  EM +       +TY+TII       LF+    
Sbjct: 1323 P-DTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKA-----LFESKSR 1376

Query: 240  --EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
              E   WFERM ++G+ P   TYS ++D + K+ ++E+ + L E     G+ P P A+  
Sbjct: 1377 ASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCS 1436

Query: 298  LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
            L    G++  YD    + QE+K      +  VY  +++ +GKAG+   A ++FDEM + G
Sbjct: 1437 LIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLG 1496

Query: 358  LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417
              PD     AL+    +     +AL    RM+E+    D   YN +LN  A  G    A 
Sbjct: 1497 CAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAM 1556

Query: 418  RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
             +  +MK S   +PD  SY  +L      G  + A +L +EM+ LG   +++  + +++ 
Sbjct: 1557 EMLSNMKQST-VRPDVVSYNTVLGALSHAGMFEEASKLMKEMNTLGFEYDLITYSSILEA 1615

Query: 478  LGK 480
            +GK
Sbjct: 1616 IGK 1618



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 93/358 (25%), Positives = 164/358 (45%), Gaps = 4/358 (1%)

Query: 156  NALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVS 215
            + + +L + K  +++   F  IK++   P+    YN  +  L    Q++ + QL NEM +
Sbjct: 1154 DVVRMLGNAKMVRQAITIFYQIKTRKCQPIAQA-YNSMIIMLMHEGQYEKVHQLYNEMST 1212

Query: 216  -NEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVE 274
                  D +TYS +I+   +    D AI+    M + G+ P    Y+ ++ ++ K     
Sbjct: 1213 EGHCFPDTVTYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAH 1272

Query: 275  EVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLL 334
              LSL+E       +PD   ++ L +  G++G  D   +   EM+  G +P+ V  N ++
Sbjct: 1273 GALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMI 1332

Query: 335  EAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW-ERMRENKW 393
              +GKAG+   A  LF EM      P   T   +IK   +++     +  W ERM+E+  
Sbjct: 1333 NFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGI 1392

Query: 394  PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAI 453
                  Y+ L++       +E+A  L E+M    +  P   +Y ++++  G     D A 
Sbjct: 1393 SPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGF-PPCPAAYCSLIDALGKAKRYDLAC 1451

Query: 454  ELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
            ELF+E+ E   + +      +I+ LGKA R+DD + +F      G  PD      L+S
Sbjct: 1452 ELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMS 1509



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 88/340 (25%), Positives = 166/340 (48%), Gaps = 8/340 (2%)

Query: 167  WQKSYFFFNWIKSQ-NLFPMETIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNIT 224
            ++K +  +N + ++ + FP +T+ Y+  + +  + GR+   I QL NEM    ++     
Sbjct: 1200 YEKVHQLYNEMSTEGHCFP-DTVTYSALISAFCKLGRRDSAI-QLLNEMKEIGMQPTTKI 1257

Query: 225  YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
            Y+ +I    + N    A+  FE M      PD  TY+ ++    K+G+++E    +    
Sbjct: 1258 YTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQ 1317

Query: 285  ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA-GKP 343
              G +PD +  + +    G++G  D    + QEM++L   P++V YNT+++A+ ++  + 
Sbjct: 1318 REGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRA 1377

Query: 344  GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
                S F+ M ESG++P   T + LI  + K    + A+ L E M E  +P     Y +L
Sbjct: 1378 SEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSL 1437

Query: 404  LNMCADIGLVEEAERLFEDMKLSDYCKPDNYS-YTAMLNIYGSGGNVDNAIELFEEMSEL 462
            ++        + A  LF+++K  + C   +   Y  M+   G  G +D+AI +F+EM++L
Sbjct: 1438 IDALGKAKRYDLACELFQELK--ENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKL 1495

Query: 463  GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            G A +V     L+  L +   +D+ +       + G  PD
Sbjct: 1496 GCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPD 1535



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 85/357 (23%), Positives = 148/357 (41%), Gaps = 39/357 (10%)

Query: 173  FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEI------ELDNI--- 223
            FF W   +  +  +T  Y   +  L    Q+  + ++  EMV N I      EL ++   
Sbjct: 1099 FFRWAAKRRNYEHDTSTYMALIHCLEVVEQYGEMWKMIQEMVRNPICVVTPTELSDVVRM 1158

Query: 224  ---------------------------TYSTIITCAKRCNLFDEAIEWFERMYKTG-LMP 255
                                        Y+++I        +++  + +  M   G   P
Sbjct: 1159 LGNAKMVRQAITIFYQIKTRKCQPIAQAYNSMIIMLMHEGQYEKVHQLYNEMSTEGHCFP 1218

Query: 256  DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVL 315
            D VTYSA++  + K G+ +  + L       G +P    +++L  +F +  D  G   + 
Sbjct: 1219 DTVTYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSLF 1278

Query: 316  QEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA 375
            +EM+    +P++  Y  L+  +GKAG+   A   F EM   G  PD   +  +I   GKA
Sbjct: 1279 EEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKA 1338

Query: 376  RWAKDALELWERMRENKWPMDFILYNTLLN-MCADIGLVEEAERLFEDMKLSDYCKPDNY 434
                DA++L++ M   +     + YNT++  +        E    FE MK S    P ++
Sbjct: 1339 GRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGI-SPSSF 1397

Query: 435  SYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
            +Y+ +++ +     ++ A+ L EEM E G          LI  LGKA+R D    +F
Sbjct: 1398 TYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELF 1454



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 88/345 (25%), Positives = 149/345 (43%), Gaps = 6/345 (1%)

Query: 141  FLRAITEIPHQPTRE-NALLILNSLKF--WQKSYFFFNWIKSQNLFPMETIFYNVTMKSL 197
             L  + EI  QPT +   +LI    KF     +   F  ++ Q   P +   Y   ++ L
Sbjct: 1242 LLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCRP-DVFTYTELIRGL 1300

Query: 198  RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDE 257
                +         EM       D +  + +I    +    D+A++ F+ M     +P  
Sbjct: 1301 GKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSV 1360

Query: 258  VTYSAILD-VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQ 316
            VTY+ I+  ++    +  EV S +ER   SG  P    +S+L   F ++   +    +L+
Sbjct: 1361 VTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLE 1420

Query: 317  EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
            EM   G  P    Y +L++A+GKA +  LA  LF E+ E+  +   +    +IK  GKA 
Sbjct: 1421 EMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAG 1480

Query: 377  WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY 436
               DA+ +++ M +     D   YN L++  A  G+++EA      M+    C PD  SY
Sbjct: 1481 RLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQ-EHGCIPDINSY 1539

Query: 437  TAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
              +LN     G    A+E+   M +  V  +V+    ++  L  A
Sbjct: 1540 NIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHA 1584



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 87/192 (45%), Gaps = 40/192 (20%)

Query: 349  LFDEMVESGL---TPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405
            +  EMV + +   TP E  L+ ++++ G A+  + A+ ++ +++  K       YN+++ 
Sbjct: 1135 MIQEMVRNPICVVTPTE--LSDVVRMLGNAKMVRQAITIFYQIKTRKCQPIAQAYNSMII 1192

Query: 406  MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG-- 463
            M    G  E+  +L+ +M    +C PD  +Y+A+++ +   G  D+AI+L  EM E+G  
Sbjct: 1193 MLMHEGQYEKVHQLYNEMSTEGHCFPDTVTYSALISAFCKLGRRDSAIQLLNEMKEIGMQ 1252

Query: 464  ---------VAI------------------------NVMGCTCLIQCLGKARRIDDLVRV 490
                     +A+                        +V   T LI+ LGKA RID+    
Sbjct: 1253 PTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHF 1312

Query: 491  FGVSIDRGVKPD 502
            F      G +PD
Sbjct: 1313 FCEMQREGCRPD 1324


>gi|302756343|ref|XP_002961595.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
 gi|300170254|gb|EFJ36855.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
          Length = 603

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 151/317 (47%), Gaps = 2/317 (0%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           P++ +    +L L       ++   F+ ++++++ P ++  Y + +  L    +     +
Sbjct: 148 PNRRSHNTIILGLCQQSKIDQACQVFHEMEARDI-PPDSWSYGILIDGLAKAGKLNEAYK 206

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L   M+ + I    +TY+ +I         DEA+E F+ M   G  P   T++ ++D + 
Sbjct: 207 LFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHC 266

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           K GK++E   L +R    G  PD + +S L          D  R++L++M     +P +V
Sbjct: 267 KRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVV 326

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
             NTL+  + KAG+   AR + D MV SG +PD  T   L+  + +A   + A EL   M
Sbjct: 327 TQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDM 386

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
                  + + Y  L++       + EA  +F  MK S  C P+ ++YTA++  + S G 
Sbjct: 387 VARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMK-SSGCAPNLFTYTALILGFCSAGQ 445

Query: 449 VDNAIELFEEMSELGVA 465
           VD  ++LF EM   G++
Sbjct: 446 VDGGLKLFGEMVCAGIS 462



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/330 (27%), Positives = 149/330 (45%), Gaps = 2/330 (0%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F  +    + P  T+ Y   +  L     F    +L  +M         +TY+ II  +
Sbjct: 32  LFQKLLHSGVTP-STVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVIIDAS 90

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +  + +EA +  ++M + G +PD VTY+ ++D   KSG+VEE L L+      G  P+ 
Sbjct: 91  CKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSGRVEEALLLFNEMERLGCTPNR 150

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
            + + +     +    D    V  EM++  + P+   Y  L++ + KAGK   A  LF  
Sbjct: 151 RSHNTIILGLCQQSKIDQACQVFHEMEARDIPPDSWSYGILIDGLAKAGKLNEAYKLFRR 210

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M++SG+TP   T   +I     A    +ALEL++ MR          +N L++     G 
Sbjct: 211 MLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGK 270

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
           ++EA RL + M   D   PD  +Y+ +++   S   VD+A  L E+M +      V+   
Sbjct: 271 MDEAFRLLKRMT-DDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQN 329

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            LI  L KA RI +   V    +  G  PD
Sbjct: 330 TLIHGLCKAGRIKEAREVLDAMVSSGQSPD 359



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/312 (26%), Positives = 148/312 (47%), Gaps = 3/312 (0%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           Q+ +EM + +I  D+ +Y  +I    +    +EA + F RM  +G+ P  VTY+ ++   
Sbjct: 171 QVFHEMEARDIPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGM 230

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
             +  ++E L L++   + G +P    F++L     + G  D    +L+ M   G  P++
Sbjct: 231 CLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDV 290

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
           V Y+TL+  +    +   AR L ++MV+    P   T   LI    KA   K+A E+ + 
Sbjct: 291 VTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDA 350

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           M  +    D + YNTL++     G  E A  L  DM ++    P+  +YTA+++      
Sbjct: 351 MVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDM-VARGLAPNVVTYTALVSGLCKAN 409

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCG 507
            +  A  +F +M   G A N+   T LI     A ++D  +++FG  +  G+ PD  + G
Sbjct: 410 RLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYG 469

Query: 508 CLLSVVSLCETS 519
            L     LC++ 
Sbjct: 470 TL--AAELCKSG 479



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 147/313 (46%), Gaps = 3/313 (0%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           Y + +  L    +      L  +++ + +    + Y+++I      N FD+A E F  M 
Sbjct: 13  YGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMN 72

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
           + G  P  VTY+ I+D   K G +EE   L ++ +  G  PD + ++ +     +SG  +
Sbjct: 73  RRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSGRVE 132

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               +  EM+ LG  PN   +NT++  + +  K   A  +F EM    + PD  +   LI
Sbjct: 133 EALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDIPPDSWSYGILI 192

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLN-MCADIGLVEEAERLFEDMKLSDY 428
               KA    +A +L+ RM ++      + YN +++ MC    L +EA  LF+ M+ S  
Sbjct: 193 DGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTL-DEALELFKSMR-SKG 250

Query: 429 CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLV 488
           C+P  +++  +++ +   G +D A  L + M++ G   +V+  + LI  L    R+DD  
Sbjct: 251 CRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDAR 310

Query: 489 RVFGVSIDRGVKP 501
            +    + R  KP
Sbjct: 311 HLLEDMVKRQCKP 323



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 143/317 (45%), Gaps = 1/317 (0%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + YN  M  L    + +    L NEM       +  +++TII    + +  D+A + F
Sbjct: 114 DVVTYNTVMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVF 173

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
             M    + PD  +Y  ++D  AK+GK+ E   L+ R + SG  P  + ++V+      +
Sbjct: 174 HEMEARDIPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLA 233

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
              D    + + M+S G +P+   +N L++A  K GK   A  L   M + G  PD  T 
Sbjct: 234 YTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTY 293

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
           + LI          DA  L E M + +     +  NTL++     G ++EA  + + M +
Sbjct: 294 STLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAM-V 352

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
           S    PD  +Y  +++ +   G  + A EL  +M   G+A NV+  T L+  L KA R+ 
Sbjct: 353 SSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLP 412

Query: 486 DLVRVFGVSIDRGVKPD 502
           +   VF      G  P+
Sbjct: 413 EACGVFAQMKSSGCAPN 429



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 123/254 (48%), Gaps = 1/254 (0%)

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M +  + PD  +Y  ++D  AK+GK+ +   L+++ + SG  P  +A++ L      +  
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
           +D  R +  +M   G  P+ V YN +++A  K G    A  L  +M+E G  PD  T   
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 120

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           ++    K+   ++AL L+  M       +   +NT++        +++A ++F +M+  D
Sbjct: 121 VMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARD 180

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
              PD++SY  +++     G ++ A +LF  M + G+  + +    +I  +  A  +D+ 
Sbjct: 181 I-PPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEA 239

Query: 488 VRVFGVSIDRGVKP 501
           + +F     +G +P
Sbjct: 240 LELFKSMRSKGCRP 253



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 66/290 (22%), Positives = 130/290 (44%), Gaps = 1/290 (0%)

Query: 213 MVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK 272
           M    +  D+ +Y  +I    +    ++A + F+++  +G+ P  V Y++++     +  
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 273 VEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNT 332
            ++   L+      G  P P+ ++V+     + G  +    ++++M   G  P++V YNT
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 120

Query: 333 LLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENK 392
           +++ + K+G+   A  LF+EM   G TP+ ++   +I    +      A +++  M    
Sbjct: 121 VMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARD 180

Query: 393 WPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNA 452
            P D   Y  L++  A  G + EA +LF  M L     P   +Y  +++       +D A
Sbjct: 181 IPPDSWSYGILIDGLAKAGKLNEAYKLFRRM-LDSGITPSAVTYNVVIHGMCLAYTLDEA 239

Query: 453 IELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           +ELF+ M   G   +      LI    K  ++D+  R+     D G  PD
Sbjct: 240 LELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPD 289



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 112/264 (42%), Gaps = 8/264 (3%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
            L  +MV  + +   +T +T+I    +     EA E  + M  +G  PD VTY+ ++  +
Sbjct: 311 HLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGH 370

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            ++G+ E    L    VA G  P+ + ++ L     ++        V  +MKS G  PNL
Sbjct: 371 CRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNL 430

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW-- 385
             Y  L+     AG+      LF EMV +G++PD      L     K+  +  ALE+   
Sbjct: 431 FTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILRE 490

Query: 386 --ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM-KLSDYCKPDN-YSYTAMLN 441
             E +R   W  +  +Y   ++   D G +E A     DM +      P+   S  A L 
Sbjct: 491 GRESLRSEAWGDE--VYRFAVDGLLDAGKMEMALGFVRDMVRGGQLPAPERCASLVAGLC 548

Query: 442 IYGSGGNVDNAIELFEEMSELGVA 465
             G GG     +E   +++  G A
Sbjct: 549 KSGQGGEARAVLEEIMDLAYGGKA 572



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 94/205 (45%), Gaps = 2/205 (0%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + YN  +       Q +   +L ++MV+  +  + +TY+ +++   + N   EA   F
Sbjct: 359 DVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVF 418

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
            +M  +G  P+  TY+A++  +  +G+V+  L L+   V +G  PD + +  L     +S
Sbjct: 419 AQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKS 478

Query: 306 GDYDGIRYVLQEMK-SLGVQP-NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
           G       +L+E + SL  +     VY   ++ +  AGK  +A     +MV  G  P  +
Sbjct: 479 GRSARALEILREGRESLRSEAWGDEVYRFAVDGLLDAGKMEMALGFVRDMVRGGQLPAPE 538

Query: 364 TLTALIKIYGKARWAKDALELWERM 388
              +L+    K+    +A  + E +
Sbjct: 539 RCASLVAGLCKSGQGGEARAVLEEI 563


>gi|15237575|ref|NP_198933.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75309191|sp|Q9FLL3.1|PP412_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g41170, mitochondrial; Flags: Precursor
 gi|9759163|dbj|BAB09719.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|66792708|gb|AAY56456.1| At5g41170 [Arabidopsis thaliana]
 gi|332007267|gb|AED94650.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 527

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 96/355 (27%), Positives = 179/355 (50%), Gaps = 13/355 (3%)

Query: 161 LNSLKFWQKSYFFFNWIKSQNLFPMETI-----FYNVTMKSLRFGRQFQLIEQLANEMVS 215
           L+SL+F +    F + ++S+   P+ +I       NV  K  +F     L + L    VS
Sbjct: 48  LHSLQFNEALDLFTHMVESR---PLPSIIDFTKLLNVIAKMKKFDVVINLCDHLQIMGVS 104

Query: 216 NEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEE 275
           +++   N+    ++ C  + +    A  +  +M K G  PD VT++++++ +    ++EE
Sbjct: 105 HDLYTCNL----LMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEE 160

Query: 276 VLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLE 335
            +S+  + V  G KPD + ++ +     ++G  +    +  +M++ G++P++V+Y +L+ 
Sbjct: 161 AMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVN 220

Query: 336 AMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPM 395
            +  +G+   A SL   M +  + PD  T  ALI  + K     DA EL+  M       
Sbjct: 221 GLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAP 280

Query: 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIEL 455
           +   Y +L+N     G V+EA ++F  M+ +  C PD  +YT+++N +     VD+A+++
Sbjct: 281 NIFTYTSLINGFCMEGCVDEARQMFYLME-TKGCFPDVVAYTSLINGFCKCKKVDDAMKI 339

Query: 456 FEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
           F EMS+ G+  N +  T LIQ  G+  + +    VF   + RGV P+ R    LL
Sbjct: 340 FYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLL 394



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 83/319 (26%), Positives = 151/319 (47%), Gaps = 2/319 (0%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + Y   + SL           L ++M +  I  D + Y++++        + +A    
Sbjct: 176 DVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLL 235

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
             M K  + PD +T++A++D + K GK  +   LY   +     P+   ++ L   F   
Sbjct: 236 RGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCME 295

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G  D  R +   M++ G  P++V Y +L+    K  K   A  +F EM + GLT +  T 
Sbjct: 296 GCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITY 355

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
           T LI+ +G+      A E++  M     P +   YN LL+     G V++A  +FEDM+ 
Sbjct: 356 TTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQK 415

Query: 426 S--DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483
              D   P+ ++Y  +L+     G ++ A+ +FE+M +  + I ++  T +IQ + KA +
Sbjct: 416 REMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGK 475

Query: 484 IDDLVRVFGVSIDRGVKPD 502
           + + V +F     +GVKP+
Sbjct: 476 VKNAVNLFCSLPSKGVKPN 494



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 91/376 (24%), Positives = 163/376 (43%), Gaps = 14/376 (3%)

Query: 121 VRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTRENALL--ILNSLKFWQKSYFFFNWIK 178
           +  +K F   +N CD+ +      I  + H     N L+     S + +  S F    +K
Sbjct: 82  IAKMKKFDVVINLCDHLQ------IMGVSHDLYTCNLLMNCFCQSSQPYLASSFLGKMMK 135

Query: 179 SQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLF 238
               F  + + +   +     G + +    + N+MV   I+ D + Y+TII    +    
Sbjct: 136 LG--FEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHV 193

Query: 239 DEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
           + A+  F++M   G+ PD V Y+++++    SG+  +  SL         KPD I F+ L
Sbjct: 194 NYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNAL 253

Query: 299 GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
              F + G +     +  EM  + + PN+  Y +L+      G    AR +F  M   G 
Sbjct: 254 IDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKGC 313

Query: 359 TPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAER 418
            PD    T+LI  + K +   DA++++  M +     + I Y TL+     +G    A+ 
Sbjct: 314 FPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQE 373

Query: 419 LFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL---GVAINVMGCTCLI 475
           +F  M +S    P+  +Y  +L+     G V  A+ +FE+M +    GVA N+     L+
Sbjct: 374 VFSHM-VSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLL 432

Query: 476 QCLGKARRIDDLVRVF 491
             L    +++  + VF
Sbjct: 433 HGLCYNGKLEKALMVF 448



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/279 (28%), Positives = 132/279 (47%), Gaps = 12/279 (4%)

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
           + L   M   +I+ D IT++ +I    +   F +A E +  M +  + P+  TY+++++ 
Sbjct: 232 DSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLING 291

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
           +   G V+E   ++      G  PD +A++ L   F +    D    +  EM   G+  N
Sbjct: 292 FCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGN 351

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
            + Y TL++  G+ GKP +A+ +F  MV  G+ P+ +T   L+         K AL ++E
Sbjct: 352 TITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFE 411

Query: 387 RMRENKWPMDFI-----LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
            M+  K  MD +      YN LL+     G +E+A  +FEDM+  +    D    T  + 
Sbjct: 412 DMQ--KREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREM---DIGIITYTII 466

Query: 442 IYG--SGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL 478
           I G    G V NA+ LF  +   GV  NV+  T +I  L
Sbjct: 467 IQGMCKAGKVKNAVNLFCSLPSKGVKPNVVTYTTMISGL 505



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 147/322 (45%), Gaps = 4/322 (1%)

Query: 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
           F+EA++ F  M ++  +P  + ++ +L+V AK  K + V++L +     G   D    ++
Sbjct: 53  FNEALDLFTHMVESRPLPSIIDFTKLLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCNL 112

Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
           L   F +S         L +M  LG +P++V + +L+       +   A S+ ++MVE G
Sbjct: 113 LMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMG 172

Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417
           + PD    T +I    K      AL L+++M       D ++Y +L+N   + G   +A+
Sbjct: 173 IKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDAD 232

Query: 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
            L   M      KPD  ++ A+++ +   G   +A EL+ EM  + +A N+   T LI  
Sbjct: 233 SLLRGMTKRKI-KPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLING 291

Query: 478 LGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PK 535
                 +D+  ++F +   +G  PD      L++    C+  +D  K+   + Q      
Sbjct: 292 FCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGN 351

Query: 536 LVAFLNLIED-NSTGFENIKEE 556
            + +  LI+     G  N+ +E
Sbjct: 352 TITYTTLIQGFGQVGKPNVAQE 373



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 67/279 (24%), Positives = 116/279 (41%), Gaps = 42/279 (15%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIIT--CAKRCNLFDEAIE 243
           + I +N  + +     +F   E+L NEM+   I  +  TY+++I   C + C   DEA +
Sbjct: 246 DVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGC--VDEARQ 303

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
            F  M   G  PD V Y+++++ + K  KV++ + ++      G   + I ++ L + FG
Sbjct: 304 MFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFG 363

Query: 304 ESGDYDGIRYVLQEMKSLGV--------------------------------------QP 325
           + G  +  + V   M S GV                                       P
Sbjct: 364 QVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAP 423

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
           N+  YN LL  +   GK   A  +F++M +  +     T T +I+   KA   K+A+ L+
Sbjct: 424 NIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAVNLF 483

Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
             +       + + Y T+++     GL  EA  LF  MK
Sbjct: 484 CSLPSKGVKPNVVTYTTMISGLFREGLKHEAHVLFRKMK 522



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 85/184 (46%), Gaps = 3/184 (1%)

Query: 179 SQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLF 238
           SQ      TI Y   ++      +  + +++ + MVS  +  +  TY+ ++ C       
Sbjct: 344 SQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKV 403

Query: 239 DEAIEWFERMYK---TGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAF 295
            +A+  FE M K    G+ P+  TY+ +L     +GK+E+ L ++E           I +
Sbjct: 404 KKALMIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITY 463

Query: 296 SVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVE 355
           +++ +   ++G       +   + S GV+PN+V Y T++  + + G    A  LF +M E
Sbjct: 464 TIIIQGMCKAGKVKNAVNLFCSLPSKGVKPNVVTYTTMISGLFREGLKHEAHVLFRKMKE 523

Query: 356 SGLT 359
            G++
Sbjct: 524 DGVS 527


>gi|302806388|ref|XP_002984944.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
 gi|300147530|gb|EFJ14194.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
          Length = 468

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/355 (25%), Positives = 170/355 (47%), Gaps = 4/355 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F  +K +     +   YN  +  L      +   +L +EM    I  +  TYS
Sbjct: 61  FGKALDLFQSMKREKRVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYS 120

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           +II    +    +E+ +  E M   G  PD   ++ ++  +A+S  +E+   +Y+  V S
Sbjct: 121 SIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVES 180

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEM--KSLGVQPNLVVYNTLLEAMGKAGKPG 344
           G+KPD +++ +L     + G  D    +L EM  ++ G  PN++ ++TL+  + + G+  
Sbjct: 181 GYKPDNVSYHILIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRTGELE 240

Query: 345 LARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
            A  +F  M+E+G  P++ T T LI    +A     A EL+E+M +   P D + YN+L+
Sbjct: 241 KALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLI 300

Query: 405 NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
                 G ++EAE+L+ +M      +P   ++  +++ +   G +  A EL  EM   G+
Sbjct: 301 AGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGL 360

Query: 465 AINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETS 519
           A +      LI  L +A ++D+ + V+    ++    D     C+  V  LC+T 
Sbjct: 361 AADTCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDP--VSCVSFVGGLCKTG 413



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 63/282 (22%), Positives = 140/282 (49%), Gaps = 4/282 (1%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER- 282
            Y  ++    +  +  +A+E FE M     +P  VTY+ +++    +G+  + L L++  
Sbjct: 12  AYDFVVQSLAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGEFGKALDLFQSM 71

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
                 +PD   ++ L      SG+ +G R +L EM+   +  N+  Y+++++++ K  K
Sbjct: 72  KREKRVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSIIKSLVKEAK 131

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
           P  +  + +EM+ +G  PD      +++ + ++   + A E+++ M E+ +  D + Y+ 
Sbjct: 132 PEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHI 191

Query: 403 LLNMCADIGLVEEAERLFEDMKL--SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           L++  A IG ++E+ ++  +M +  + Y  P+  +++ +++     G ++ A+E+F  M 
Sbjct: 192 LIHGLAKIGKLDESLKILSEMAMRAAGYV-PNVITFSTLIHGLCRTGELEKALEVFGSML 250

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           E G   N    T LI  L +A ++     +F       + PD
Sbjct: 251 EAGCKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPPD 292



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 119/236 (50%), Gaps = 2/236 (0%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           IT+ST+I    R    ++A+E F  M + G  P++ TY+ ++    ++ KV +   L+E+
Sbjct: 224 ITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELFEK 283

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS-LGVQPNLVVYNTLLEAMGKAG 341
              +   PD +A++ L   + + G  D    + +EM    G+QP +V +NTL++   K G
Sbjct: 284 MTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLG 343

Query: 342 KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYN 401
           K G A  L  EM   GL  D  T   LI    +A    +ALE++++MRE K+ +D +   
Sbjct: 344 KLGRANELVAEMGTKGLAADTCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCV 403

Query: 402 TLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE 457
           + +      G +++A  +FE  + S    P+  ++  +       G V++A +L E
Sbjct: 404 SFVGGLCKTGNIDQAYAVFEATRKSGAV-PNPETFRILSESLIKLGRVEDAQKLME 458



 Score = 47.8 bits (112), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 26/113 (23%), Positives = 56/113 (49%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           +L  EM +  +  D  TY  +I    R    DEA+E +++M +   + D V+  + +   
Sbjct: 350 ELVAEMGTKGLAADTCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGL 409

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
            K+G +++  +++E    SG  P+P  F +L +   + G  +  + +++  K+
Sbjct: 410 CKTGNIDQAYAVFEATRKSGAVPNPETFRILSESLIKLGRVEDAQKLMEPAKA 462


>gi|224030417|gb|ACN34284.1| unknown [Zea mays]
 gi|413950072|gb|AFW82721.1| hypothetical protein ZEAMMB73_503137 [Zea mays]
          Length = 647

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 153/313 (48%), Gaps = 1/313 (0%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN  + +L    + Q +  + ++MV   ++ + ITY+TI+    +      A     RM 
Sbjct: 231 YNAIVLALCREFRMQEVFSVVSDMVGRGLQPNVITYTTIVDAFCKAGELRMACAILARMV 290

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
            TG  P+ VT++A++      G+V + L ++   VA GW P  +++++L +     GD  
Sbjct: 291 ITGCTPNVVTFTALVRGLFDDGRVHDALDMWRWMVAEGWAPSTVSYNILIRGLCSVGDLK 350

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
           G   +L  M+  G  PN+  Y+TL++   KAG  G A S++++M  SG  P+    T ++
Sbjct: 351 GASSILNSMEQHGCFPNVRTYSTLIDGFSKAGDLGGAISIWNDMSRSGCKPNVVVYTNMV 410

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
            ++ K      A  L ++M     P + + +NTL+    D   V  A  +F +M+    C
Sbjct: 411 DVFCKKLMFNQAKSLIDKMLLENCPPNTVTFNTLIRSLCDCRRVGRALGVFHEMRRHG-C 469

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
            P+  +Y  +++     GN  +A+ +  EM   G+ ++++    ++  L + R   + + 
Sbjct: 470 VPNGRTYNELIHGLFREGNCGDALHMVTEMQSHGIELSLVTYNTVVSGLCQTRMSREAMV 529

Query: 490 VFGVSIDRGVKPD 502
             G  I +G++P+
Sbjct: 530 FVGKMIVQGIQPN 542



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 68/286 (23%), Positives = 133/286 (46%), Gaps = 6/286 (2%)

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           P E   YN  + +L        +  + + M  + +  +  TY+ ++    + N    A +
Sbjct: 125 PTEPRLYNHLIDALLRENMVGAVVLVYDNMRKDGVHPNVFTYNLLVRALCQNNRVGAARK 184

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
             + M + G  PD+VTY+ I+ V  K  +++E        V +   P   +++ +     
Sbjct: 185 MLDEMARKGCPPDDVTYATIVSVLCKLDRLDEATE-----VLAAMPPVAASYNAIVLALC 239

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
                  +  V+ +M   G+QPN++ Y T+++A  KAG+  +A ++   MV +G TP+  
Sbjct: 240 REFRMQEVFSVVSDMVGRGLQPNVITYTTIVDAFCKAGELRMACAILARMVITGCTPNVV 299

Query: 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
           T TAL++         DAL++W  M    W    + YN L+     +G ++ A  +   M
Sbjct: 300 TFTALVRGLFDDGRVHDALDMWRWMVAEGWAPSTVSYNILIRGLCSVGDLKGASSILNSM 359

Query: 424 KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVM 469
           +    C P+  +Y+ +++ +   G++  AI ++ +MS  G   NV+
Sbjct: 360 E-QHGCFPNVRTYSTLIDGFSKAGDLGGAISIWNDMSRSGCKPNVV 404



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 84/375 (22%), Positives = 160/375 (42%), Gaps = 12/375 (3%)

Query: 135 DNTEEAFLRAITEI----PHQPTRENALL-ILNSLKFWQKSYFFFNWIKSQNLFPMETIF 189
           D   + F RA+ ++    P +P   N L+  L            ++ ++   + P     
Sbjct: 107 DRALKTFYRAVHDLGCARPTEPRLYNHLIDALLRENMVGAVVLVYDNMRKDGVHP-NVFT 165

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN+ +++L    +     ++ +EM       D++TY+TI++   + +  DEA E    M 
Sbjct: 166 YNLLVRALCQNNRVGAARKMLDEMARKGCPPDDVTYATIVSVLCKLDRLDEATEVLAAMP 225

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
                P   +Y+AI+    +  +++EV S+    V  G +P+ I ++ +   F ++G+  
Sbjct: 226 -----PVAASYNAIVLALCREFRMQEVFSVVSDMVGRGLQPNVITYTTIVDAFCKAGELR 280

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               +L  M   G  PN+V +  L+  +   G+   A  ++  MV  G  P   +   LI
Sbjct: 281 MACAILARMVITGCTPNVVTFTALVRGLFDDGRVHDALDMWRWMVAEGWAPSTVSYNILI 340

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
           +        K A  +   M ++    +   Y+TL++  +  G +  A  ++ DM  S  C
Sbjct: 341 RGLCSVGDLKGASSILNSMEQHGCFPNVRTYSTLIDGFSKAGDLGGAISIWNDMSRSG-C 399

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
           KP+   YT M++++      + A  L ++M       N +    LI+ L   RR+   + 
Sbjct: 400 KPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENCPPNTVTFNTLIRSLCDCRRVGRALG 459

Query: 490 VFGVSIDRGVKPDDR 504
           VF      G  P+ R
Sbjct: 460 VFHEMRRHGCVPNGR 474



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/345 (19%), Positives = 144/345 (41%), Gaps = 48/345 (13%)

Query: 160 ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIE 219
           + ++L  W+       W+ ++   P  T+ YN+ ++ L                      
Sbjct: 314 VHDALDMWR-------WMVAEGWAP-STVSYNILIRGL---------------------- 343

Query: 220 LDNITYSTIITCAKRCNLFD--EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL 277
                          C++ D   A      M + G  P+  TYS ++D ++K+G +   +
Sbjct: 344 ---------------CSVGDLKGASSILNSMEQHGCFPNVRTYSTLIDGFSKAGDLGGAI 388

Query: 278 SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
           S++     SG KP+ + ++ +  +F +   ++  + ++ +M      PN V +NTL+ ++
Sbjct: 389 SIWNDMSRSGCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENCPPNTVTFNTLIRSL 448

Query: 338 GKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDF 397
               + G A  +F EM   G  P+ +T   LI    +     DAL +   M+ +   +  
Sbjct: 449 CDCRRVGRALGVFHEMRRHGCVPNGRTYNELIHGLFREGNCGDALHMVTEMQSHGIELSL 508

Query: 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE 457
           + YNT+++      +  EA      M +    +P+ ++++A+++ Y   G V  A  +  
Sbjct: 509 VTYNTVVSGLCQTRMSREAMVFVGKMIVQGI-QPNAFTFSAIIHAYCKEGEVRMAAWMLG 567

Query: 458 EMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            M+ +    N++  T L+  L    ++ D +      +  G+ P+
Sbjct: 568 AMNVVNCHRNILVYTILMAELCNQDKLVDAMTYLLKMLYEGIYPN 612



 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 102/246 (41%), Gaps = 11/246 (4%)

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV---ASGWKPDPIAFSVLGKM 301
            + M   G+   E    A +  +A++G  +  L  + R V         +P  ++ L   
Sbjct: 78  LQEMRLRGVPCTEGALVAAVGAFARAGAPDRALKTFYRAVHDLGCARPTEPRLYNHLIDA 137

Query: 302 FGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD 361
                    +  V   M+  GV PN+  YN L+ A+ +  + G AR + DEM   G  PD
Sbjct: 138 LLRENMVGAVVLVYDNMRKDGVHPNVFTYNLLVRALCQNNRVGAARKMLDEMARKGCPPD 197

Query: 362 EKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL-LNMCADIGLVEEAERLF 420
           + T   ++ +  K     +A E+   M     P     YN + L +C +  + +E   + 
Sbjct: 198 DVTYATIVSVLCKLDRLDEATEVLAAM-----PPVAASYNAIVLALCREFRM-QEVFSVV 251

Query: 421 EDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK 480
            DM +    +P+  +YT +++ +   G +  A  +   M   G   NV+  T L++ L  
Sbjct: 252 SDM-VGRGLQPNVITYTTIVDAFCKAGELRMACAILARMVITGCTPNVVTFTALVRGLFD 310

Query: 481 ARRIDD 486
             R+ D
Sbjct: 311 DGRVHD 316



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/206 (21%), Positives = 85/206 (41%), Gaps = 9/206 (4%)

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVE--SG 357
           +    +GD DG++  LQEM+  GV          + A  +AG P  A   F   V     
Sbjct: 63  RRLAAAGDVDGVQLALQEMRLRGVPCTEGALVAAVGAFARAGAPDRALKTFYRAVHDLGC 122

Query: 358 LTPDEKTL-TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEA 416
             P E  L   LI    +       + +++ MR++    +   YN L+        V  A
Sbjct: 123 ARPTEPRLYNHLIDALLRENMVGAVVLVYDNMRKDGVHPNVFTYNLLVRALCQNNRVGAA 182

Query: 417 ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
            ++ ++M     C PD+ +Y  ++++      +D A E+   M  +  + N      ++ 
Sbjct: 183 RKMLDEMARKG-CPPDDVTYATIVSVLCKLDRLDEATEVLAAMPPVAASYNA-----IVL 236

Query: 477 CLGKARRIDDLVRVFGVSIDRGVKPD 502
            L +  R+ ++  V    + RG++P+
Sbjct: 237 ALCREFRMQEVFSVVSDMVGRGLQPN 262



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 66/131 (50%), Gaps = 2/131 (1%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
            +  EM S+ IEL  +TY+T+++   +  +  EA+ +  +M   G+ P+  T+SAI+  Y
Sbjct: 494 HMVTEMQSHGIELSLVTYNTVVSGLCQTRMSREAMVFVGKMIVQGIQPNAFTFSAIIHAY 553

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVL-GKMFGESGDYDGIRYVLQEMKSLGVQPN 326
            K G+V     +           + + +++L  ++  +    D + Y+L+ +   G+ PN
Sbjct: 554 CKEGEVRMAAWMLGAMNVVNCHRNILVYTILMAELCNQDKLVDAMTYLLKMLYE-GIYPN 612

Query: 327 LVVYNTLLEAM 337
            V +N L+  +
Sbjct: 613 TVTWNVLVRGV 623


>gi|357466003|ref|XP_003603286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492334|gb|AES73537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1246

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 98/361 (27%), Positives = 160/361 (44%), Gaps = 4/361 (1%)

Query: 134 CDNTEEAFLRAITE--IPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYN 191
           C+   + + R I+E   P   T    ++ L      +K       +KS  L P     Y 
Sbjct: 216 CNEALKVYKRMISEGMKPSMKTYSALMVALGRRGDTRKIMNLLEEMKSIGLRP-NIYTYT 274

Query: 192 VTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKT 251
           + +++L   R+      +  EM       D ITY+ +I         D+A E + +M  +
Sbjct: 275 ICIRALGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKELYVKMRAS 334

Query: 252 GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGI 311
              PD VTY  ++D + K G +E V   +      G+ PD + +++L +   +SGD D  
Sbjct: 335 SHSPDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTYTILIEALCKSGDVDRA 394

Query: 312 RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371
             +L  M + G+ PNL  YNT++  + KA +   A  L + M   G+ P   +    I  
Sbjct: 395 FDMLDVMTTKGIFPNLHTYNTMICGLLKARRLDEALELLENMESLGVKPTAFSYVLFIDY 454

Query: 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
           YGK+     A++ +E M++          N  L   A+ G + EAE +F D+       P
Sbjct: 455 YGKSGDPAKAIDTFETMKKRGIMPSIAACNASLYTLAETGRISEAEDIFNDLHKCGL-SP 513

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           D+ +Y  ++  Y   G +D A +L  EM   G   +VM    LI  L KA R+D   ++F
Sbjct: 514 DSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCEPDVMIINSLINTLYKAGRVDAAWKMF 573

Query: 492 G 492
           G
Sbjct: 574 G 574



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 164/349 (46%), Gaps = 2/349 (0%)

Query: 153 TRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANE 212
           + E  + IL S+     ++ +F  +     F   T   N  ++ LR  R+ + +  + + 
Sbjct: 97  SEEEVMTILKSISDPNSAFSYFKIVSQLTNFVHTTDACNYMLEILREQRRIEDMVFVFDL 156

Query: 213 MVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK 272
           M    I  +  TY TI            A     +M + G + +  +Y+ ++ +    G 
Sbjct: 157 MQKKVIYRNLTTYMTIFKALSIKGGIGRAPFALRKMTEVGFILNAYSYNGLIHLLL-PGF 215

Query: 273 VEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNT 332
             E L +Y+R ++ G KP    +S L    G  GD   I  +L+EMKS+G++PN+  Y  
Sbjct: 216 CNEALKVYKRMISEGMKPSMKTYSALMVALGRRGDTRKIMNLLEEMKSIGLRPNIYTYTI 275

Query: 333 LLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENK 392
            + A+G+A +   A  +F EM + G  PD  T T LI     A     A EL+ +MR + 
Sbjct: 276 CIRALGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKELYVKMRASS 335

Query: 393 WPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNA 452
              D + Y TL++    +G +E  +R + +M++  Y  PD  +YT ++      G+VD A
Sbjct: 336 HSPDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGY-APDVVTYTILIEALCKSGDVDRA 394

Query: 453 IELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
            ++ + M+  G+  N+     +I  L KARR+D+ + +       GVKP
Sbjct: 395 FDMLDVMTTKGIFPNLHTYNTMICGLLKARRLDEALELLENMESLGVKP 443



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 165/335 (49%), Gaps = 5/335 (1%)

Query: 136  NTEEAFLRAITEIPHQPTRENALLILNSL---KFWQKSYFFFNWIKSQNLFPMETIFYNV 192
            + +  F +    +   PT E+   +++ L    F +K+   F  +KS    P     YN+
Sbjct: 778  DAQNVFDKFTKNLGIHPTLESYNCLMDGLLGSNFTEKALELFEDMKSAGTHP-NNFTYNL 836

Query: 193  TMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTG 252
             + +    ++   +  L +EM S   E + IT++ II+   + N  ++A++ +  +    
Sbjct: 837  LLDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISALVKSNNLNKALDLYYELMSGD 896

Query: 253  LMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIR 312
              P   TY  ++D   K+G+ E+ + ++E  +  G  P+ + +++L   FG+SG+ D   
Sbjct: 897  FSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVIYNILINGFGKSGEIDFAC 956

Query: 313  YVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIY 372
             + ++M   G++P+L  Y  L+E +   G+   A   F+E+  +GL PD  +   +I   
Sbjct: 957  ELFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYFEELKLTGLDPDTVSYNFIINGL 1016

Query: 373  GKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPD 432
            GK+R   +AL L+  M+      D   YN L+      G V+ A +++E+++L    +P 
Sbjct: 1017 GKSRRLDEALSLFSEMKNRGISPDLYTYNALILHLGIAGKVDVAVKMYEELQLVGL-EPS 1075

Query: 433  NYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
             ++Y A++  +   GN D A  +F++M  +G + N
Sbjct: 1076 VFTYNALIRGHSLSGNKDQAFSVFKKMMVVGCSPN 1110



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/314 (26%), Positives = 148/314 (47%), Gaps = 3/314 (0%)

Query: 190  YNVTMKSLRFGRQF-QLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERM 248
            YN  M  L  G  F +   +L  +M S     +N TY+ ++    +    ++  + +  M
Sbjct: 799  YNCLMDGL-LGSNFTEKALELFEDMKSAGTHPNNFTYNLLLDAHGKSKRINKLYDLYSEM 857

Query: 249  YKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY 308
               G  P+ +T++ I+    KS  + + L LY   ++  + P P  +  L     ++G  
Sbjct: 858  RSRGCEPNAITHNIIISALVKSNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRS 917

Query: 309  DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
            +    + +EM   G  PN V+YN L+   GK+G+   A  LF +MV+ G+ PD K+ T L
Sbjct: 918  EQAMKIFEEMLDYGCGPNSVIYNILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYTIL 977

Query: 369  IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428
            ++         +A++ +E ++      D + YN ++N       ++EA  LF +MK +  
Sbjct: 978  VECLCITGRIDEAVQYFEELKLTGLDPDTVSYNFIINGLGKSRRLDEALSLFSEMK-NRG 1036

Query: 429  CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLV 488
              PD Y+Y A++   G  G VD A++++EE+  +G+  +V     LI+    +   D   
Sbjct: 1037 ISPDLYTYNALILHLGIAGKVDVAVKMYEELQLVGLEPSVFTYNALIRGHSLSGNKDQAF 1096

Query: 489  RVFGVSIDRGVKPD 502
             VF   +  G  P+
Sbjct: 1097 SVFKKMMVVGCSPN 1110



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 146/310 (47%), Gaps = 9/310 (2%)

Query: 198 RFGR--QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMP 255
           +FG+    + +++  NEM  +    D +TY+ +I    +    D A +  + M   G+ P
Sbjct: 349 KFGKVGDLETVKRFWNEMEVDGYAPDVVTYTILIEALCKSGDVDRAFDMLDVMTTKGIFP 408

Query: 256 DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVL 315
           +  TY+ ++    K+ +++E L L E   + G KP   ++ +    +G+SGD        
Sbjct: 409 NLHTYNTMICGLLKARRLDEALELLENMESLGVKPTAFSYVLFIDYYGKSGDPAKAIDTF 468

Query: 316 QEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA 375
           + MK  G+ P++   N  L  + + G+   A  +F+++ + GL+PD  T   L+K Y KA
Sbjct: 469 ETMKKRGIMPSIAACNASLYTLAETGRISEAEDIFNDLHKCGLSPDSVTYNMLMKCYSKA 528

Query: 376 RWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLF---EDMKLSDYCKPD 432
                A +L   M       D ++ N+L+N     G V+ A ++F   +++KL+    P 
Sbjct: 529 GQIDKATQLLSEMISKGCEPDVMIINSLINTLYKAGRVDAAWKMFGRLKNLKLA----PT 584

Query: 433 NYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFG 492
             +Y  +L   G  G +  A+ELF  M+E G   N +    L+ CL K   +D  +++F 
Sbjct: 585 VVTYNILLTGLGKEGKILKALELFGSMTESGCPPNTITFNSLLDCLSKNDAVDLALKMFC 644

Query: 493 VSIDRGVKPD 502
                   PD
Sbjct: 645 RMTMMNCNPD 654



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 103/387 (26%), Positives = 172/387 (44%), Gaps = 12/387 (3%)

Query: 142 LRAITEIPH--QPTRENALLILNSLKFWQKSYFFFNWIKSQNLFP-METIFYNVTMKSLR 198
           LR +TE+         N L+ L    F  ++   +  + S+ + P M+T  Y+  M +L 
Sbjct: 189 LRKMTEVGFILNAYSYNGLIHLLLPGFCNEALKVYKRMISEGMKPSMKT--YSALMVALG 246

Query: 199 FGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEV 258
                + I  L  EM S  +  +  TY+  I    R    D+A   F+ M   G  PD +
Sbjct: 247 RRGDTRKIMNLLEEMKSIGLRPNIYTYTICIRALGRARRIDDAWGIFKEMDDEGCGPDVI 306

Query: 259 TYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEM 318
           TY+ ++D    +GK+++   LY +  AS   PD + +  L   FG+ GD + ++    EM
Sbjct: 307 TYTVLIDALCAAGKLDKAKELYVKMRASSHSPDRVTYITLMDKFGKVGDLETVKRFWNEM 366

Query: 319 KSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWA 378
           +  G  P++V Y  L+EA+ K+G    A  + D M   G+ P+  T   +I    KAR  
Sbjct: 367 EVDGYAPDVVTYTILIEALCKSGDVDRAFDMLDVMTTKGIFPNLHTYNTMICGLLKARRL 426

Query: 379 KDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTA 438
            +ALEL E M           Y   ++     G   +A   FE MK      P   +  A
Sbjct: 427 DEALELLENMESLGVKPTAFSYVLFIDYYGKSGDPAKAIDTFETMKKRG-IMPSIAACNA 485

Query: 439 MLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRG 498
            L      G +  A ++F ++ + G++ + +    L++C  KA +ID   ++    I +G
Sbjct: 486 SLYTLAETGRISEAEDIFNDLHKCGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKG 545

Query: 499 VKPDDRLCGCLLSVVSLCETSEDVGKV 525
            +PD      ++ + SL  T    G+V
Sbjct: 546 CEPD------VMIINSLINTLYKAGRV 566



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 149/296 (50%), Gaps = 4/296 (1%)

Query: 209  LANEMVSNEI-ELDNITYSTIITCAKRCNLFDEAIEWFERMYKT-GLMPDEVTYSAILDV 266
             A  +V N + + D++    I    KR    D A   F++  K  G+ P   +Y+ ++D 
Sbjct: 747  FAEILVCNSVCQDDHVMLPLIKVLCKRKKALD-AQNVFDKFTKNLGIHPTLESYNCLMDG 805

Query: 267  YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
               S   E+ L L+E   ++G  P+   +++L    G+S   + +  +  EM+S G +PN
Sbjct: 806  LLGSNFTEKALELFEDMKSAGTHPNNFTYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPN 865

Query: 327  LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
             + +N ++ A+ K+     A  L+ E++    +P   T   LI    KA  ++ A++++E
Sbjct: 866  AITHNIIISALVKSNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFE 925

Query: 387  RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
             M +     + ++YN L+N     G ++ A  LF+ M + +  +PD  SYT ++      
Sbjct: 926  EMLDYGCGPNSVIYNILINGFGKSGEIDFACELFKKM-VKEGIRPDLKSYTILVECLCIT 984

Query: 447  GNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            G +D A++ FEE+   G+  + +    +I  LGK+RR+D+ + +F    +RG+ PD
Sbjct: 985  GRIDEAVQYFEELKLTGLDPDTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISPD 1040



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 104/435 (23%), Positives = 199/435 (45%), Gaps = 18/435 (4%)

Query: 169 KSYFFFNWIKSQNLFP-METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           +++   + + ++ +FP + T  YN  +  L   R+     +L   M S  ++    +Y  
Sbjct: 393 RAFDMLDVMTTKGIFPNLHT--YNTMICGLLKARRLDEALELLENMESLGVKPTAFSYVL 450

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
            I    +     +AI+ FE M K G+MP     +A L   A++G++ E   ++      G
Sbjct: 451 FIDYYGKSGDPAKAIDTFETMKKRGIMPSIAACNASLYTLAETGRISEAEDIFNDLHKCG 510

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
             PD + +++L K + ++G  D    +L EM S G +P++++ N+L+  + KAG+   A 
Sbjct: 511 LSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCEPDVMIINSLINTLYKAGRVDAAW 570

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
            +F  +    L P   T   L+   GK      ALEL+  M E+  P + I +N+LL+  
Sbjct: 571 KMFGRLKNLKLAPTVVTYNILLTGLGKEGKILKALELFGSMTESGCPPNTITFNSLLDCL 630

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYG--SGGNVDNAIELFEEMSELGVA 465
           +    V+ A ++F  M + + C PD  +Y  +  IYG    G +D A   F +M +    
Sbjct: 631 SKNDAVDLALKMFCRMTMMN-CNPDVLTYNTI--IYGLIREGRIDYAFWFFHQMKKFLSP 687

Query: 466 INVMGCTCLIQCLGKARRIDDLVRVFGVSIDRG-VKPDDRLCG----CLLSVVSLCETSE 520
             V  CT LI  + +  R++D ++V    + +  ++ + +  G    C+L+   + E + 
Sbjct: 688 DYVTLCT-LIPGVVRHGRVEDAIKVVMEFVHQACLQTNSQFWGELMECILTEAEI-EEAI 745

Query: 521 DVGKVITC--LQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLID 578
              +++ C  + Q +  ++  + ++       +  +  F    K+  +       NCL+D
Sbjct: 746 SFAEILVCNSVCQDDHVMLPLIKVLCKRKKALD-AQNVFDKFTKNLGIHPTLESYNCLMD 804

Query: 579 ICRNRNLNERAHELL 593
                N  E+A EL 
Sbjct: 805 GLLGSNFTEKALELF 819



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 96/189 (50%)

Query: 187  TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
            ++ YN+ +       +     +L  +MV   I  D  +Y+ ++ C       DEA+++FE
Sbjct: 936  SVIYNILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYFE 995

Query: 247  RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
             +  TGL PD V+Y+ I++   KS +++E LSL+      G  PD   ++ L    G +G
Sbjct: 996  ELKLTGLDPDTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNALILHLGIAG 1055

Query: 307  DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
              D    + +E++ +G++P++  YN L+     +G    A S+F +M+  G +P+ +T  
Sbjct: 1056 KVDVAVKMYEELQLVGLEPSVFTYNALIRGHSLSGNKDQAFSVFKKMMVVGCSPNTETFA 1115

Query: 367  ALIKIYGKA 375
             L   Y +A
Sbjct: 1116 QLPNKYPRA 1124



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 84/365 (23%), Positives = 149/365 (40%), Gaps = 38/365 (10%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           FN +    L P +++ YN+ MK      Q     QL +EM+S   E D +  +++I    
Sbjct: 503 FNDLHKCGLSP-DSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCEPDVMIINSLINTLY 561

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
           +    D A + F R+    L P  VTY+ +L    K GK+ + L L+     SG  P+ I
Sbjct: 562 KAGRVDAAWKMFGRLKNLKLAPTVVTYNILLTGLGKEGKILKALELFGSMTESGCPPNTI 621

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
            F+ L     ++   D    +   M  +   P+++ YNT++  + + G+   A   F +M
Sbjct: 622 TFNSLLDCLSKNDAVDLALKMFCRMTMMNCNPDVLTYNTIIYGLIREGRIDYAFWFFHQM 681

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALE-LWERMRENKWPMDFILYNTLLNMCADIGL 412
            +  L+PD  TL  LI    +    +DA++ + E + +     +   +  L+        
Sbjct: 682 -KKFLSPDYVTLCTLIPGVVRHGRVEDAIKVVMEFVHQACLQTNSQFWGELMECILTEAE 740

Query: 413 VEEAERLFEDMKLSDYCKPDNY-----------------------------------SYT 437
           +EEA    E +  +  C+ D+                                    SY 
Sbjct: 741 IEEAISFAEILVCNSVCQDDHVMLPLIKVLCKRKKALDAQNVFDKFTKNLGIHPTLESYN 800

Query: 438 AMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDR 497
            +++        + A+ELFE+M   G   N      L+   GK++RI+ L  ++     R
Sbjct: 801 CLMDGLLGSNFTEKALELFEDMKSAGTHPNNFTYNLLLDAHGKSKRINKLYDLYSEMRSR 860

Query: 498 GVKPD 502
           G +P+
Sbjct: 861 GCEPN 865



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/322 (22%), Positives = 150/322 (46%), Gaps = 9/322 (2%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIE--QLANEMVSNEIELDNITYSTIITC 231
           F  +K+  L P   + YN+ +  L  G++ ++++  +L   M  +    + IT+++++ C
Sbjct: 573 FGRLKNLKLAP-TVVTYNILLTGL--GKEGKILKALELFGSMTESGCPPNTITFNSLLDC 629

Query: 232 AKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291
             + +  D A++ F RM      PD +TY+ I+    + G+++     + + +     PD
Sbjct: 630 LSKNDAVDLALKMFCRMTMMNCNPDVLTYNTIIYGLIREGRIDYAFWFFHQ-MKKFLSPD 688

Query: 292 PIAFSVLGKMFGESGDY-DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
            +    L       G   D I+ V++ +    +Q N   +  L+E +    +   A S  
Sbjct: 689 YVTLCTLIPGVVRHGRVEDAIKVVMEFVHQACLQTNSQFWGELMECILTEAEIEEAISFA 748

Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFI-LYNTLLNMCAD 409
           + +V + +  D+  +  LIK+  K + A DA  ++++  +N      +  YN L++    
Sbjct: 749 EILVCNSVCQDDHVMLPLIKVLCKRKKALDAQNVFDKFTKNLGIHPTLESYNCLMDGLLG 808

Query: 410 IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVM 469
               E+A  LFEDMK S    P+N++Y  +L+ +G    ++   +L+ EM   G   N +
Sbjct: 809 SNFTEKALELFEDMK-SAGTHPNNFTYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAI 867

Query: 470 GCTCLIQCLGKARRIDDLVRVF 491
               +I  L K+  ++  + ++
Sbjct: 868 THNIIISALVKSNNLNKALDLY 889



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 71/302 (23%), Positives = 126/302 (41%), Gaps = 50/302 (16%)

Query: 313 YVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIY 372
           +V   M+   +  NL  Y T+ +A+   G  G A     +M E G   +  +   LI + 
Sbjct: 152 FVFDLMQKKVIYRNLTTYMTIFKALSIKGGIGRAPFALRKMTEVGFILNAYSYNGLIHLL 211

Query: 373 GKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPD 432
               +  +AL++++RM                                    +S+  KP 
Sbjct: 212 LPG-FCNEALKVYKRM------------------------------------ISEGMKPS 234

Query: 433 NYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFG 492
             +Y+A++   G  G+    + L EEM  +G+  N+   T  I+ LG+ARRIDD   +F 
Sbjct: 235 MKTYSALMVALGRRGDTRKIMNLLEEMKSIGLRPNIYTYTICIRALGRARRIDDAWGIFK 294

Query: 493 VSIDRGVKPDDRLCGCLLSVVSLCETSE-DVGKVITCLQQA---NPKLVAFLNLIEDNST 548
              D G  PD      L+   +LC   + D  K +    +A   +P  V ++ L++    
Sbjct: 295 EMDDEGCGPDVITYTVLID--ALCAAGKLDKAKELYVKMRASSHSPDRVTYITLMD--KF 350

Query: 549 GFENIKEEFRNVIKDTEVDARRP----FCNCLIDICRNRNLNERAHELLYLGTLYGLYPG 604
           G     E  +    + EVD   P    +   +  +C++ ++ +RA ++L + T  G++P 
Sbjct: 351 GKVGDLETVKRFWNEMEVDGYAPDVVTYTILIEALCKSGDV-DRAFDMLDVMTTKGIFPN 409

Query: 605 LH 606
           LH
Sbjct: 410 LH 411



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 62/134 (46%)

Query: 208  QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
            Q   E+    ++ D ++Y+ II    +    DEA+  F  M   G+ PD  TY+A++   
Sbjct: 992  QYFEELKLTGLDPDTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNALILHL 1051

Query: 268  AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
              +GKV+  + +YE     G +P    ++ L +    SG+ D    V ++M  +G  PN 
Sbjct: 1052 GIAGKVDVAVKMYEELQLVGLEPSVFTYNALIRGHSLSGNKDQAFSVFKKMMVVGCSPNT 1111

Query: 328  VVYNTLLEAMGKAG 341
              +  L     +AG
Sbjct: 1112 ETFAQLPNKYPRAG 1125



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 64/134 (47%), Gaps = 1/134 (0%)

Query: 173  FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            +F  +K   L P +T+ YN  +  L   R+      L +EM +  I  D  TY+ +I   
Sbjct: 993  YFEELKLTGLDP-DTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNALILHL 1051

Query: 233  KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
                  D A++ +E +   GL P   TY+A++  ++ SG  ++  S++++ +  G  P+ 
Sbjct: 1052 GIAGKVDVAVKMYEELQLVGLEPSVFTYNALIRGHSLSGNKDQAFSVFKKMMVVGCSPNT 1111

Query: 293  IAFSVLGKMFGESG 306
              F+ L   +  +G
Sbjct: 1112 ETFAQLPNKYPRAG 1125


>gi|359475765|ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 935

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 157/334 (47%), Gaps = 35/334 (10%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
           +EM+ + +  +N  Y+ +I    +     EA+  F  ++  G++PD  T SA +    K+
Sbjct: 478 DEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKN 537

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
           G+V+E L ++      G  PD   +S L   F + G+ +    +  EM   G+ PN+ +Y
Sbjct: 538 GRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIY 597

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM-R 389
           N L++ + K+G    AR LFD M E GL PD  T + +I  Y K+    +A  L+  M  
Sbjct: 598 NALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPS 657

Query: 390 ENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM-------------KLSDYCK------ 430
           +   P  F+ YN L++ C   G +E+A  LF +M              +  YCK      
Sbjct: 658 KGVQPHSFV-YNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNTLIDGYCKSCKIQE 716

Query: 431 --------------PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
                         PD+ +YT +++ +   G ++ A  LF+EM E  + ++ +  T L+ 
Sbjct: 717 ASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMY 776

Query: 477 CLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
              K  +  ++  +F   + +GVKPD+   G ++
Sbjct: 777 GYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVI 810



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 117/466 (25%), Positives = 195/466 (41%), Gaps = 61/466 (13%)

Query: 81  NDRTPLLSKPKSTWVNPTKPRRSV-LSLQRQKRSTYSYNPRVRDLKLFARKLNDCDNTEE 139
           + R+PLL   ++ + N TK  +S+  S       T +++ ++ D   F ++ N       
Sbjct: 5   SQRSPLLLTDQNGFTN-TKFFKSIEFSTSTPTSETLNFSQQISD---FLKQNN------- 53

Query: 140 AFLRAITEIPHQPTREN-----ALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTM 194
              + I    H P++ N     A+L  N +   ++   FF W +SQ   P     +++  
Sbjct: 54  --WKTIMVSSHIPSKLNPDVIRAVLHQNQVGDPKRLLDFFYWSQSQMGVPQFLDSFSILA 111

Query: 195 KSLRFGRQFQLIEQLANEMV----SNEIELDNI-------------TYSTIITCAKRCNL 237
             L     F L   +  +M+    S+   LD++              +  +I   KR  +
Sbjct: 112 VQLCNSELFGLANGVLTQMIRTPYSSSSILDSVLFWFRNYGGSSPVVFDILIDSYKRMGM 171

Query: 238 FDEAIEWF------------------ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
            DEA   F                    M + GL+P+  TY+ I     ++ ++ E    
Sbjct: 172 LDEAANVFFVAKNDSILISLIRCNSLRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLT 231

Query: 280 YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
           +E    +G KPD  A S L   F   GD D +  +   M S G+  NL+ YN L+  + K
Sbjct: 232 FEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCK 291

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
            GK   A  +   M+  G  P+ +T   LI+ Y +      ALEL + M +       + 
Sbjct: 292 FGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVS 351

Query: 400 YNTLLN---MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELF 456
           Y  ++N    C D+ L   A +L E M  S   KP+   Y+ ++  Y S G ++ A  L 
Sbjct: 352 YGAMINGLCHCKDLSL---ANKLLEKMTFSGL-KPNVVVYSTLIMGYASEGRIEEARRLL 407

Query: 457 EEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           + MS  GVA ++     +I CL KA ++++          RG+KPD
Sbjct: 408 DGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPD 453



 Score =  112 bits (280), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 146/318 (45%), Gaps = 2/318 (0%)

Query: 181 NLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDE 240
            L P   ++  + M     GR  +   +L + M  + +  D   Y+ II+C  +    +E
Sbjct: 379 GLKPNVVVYSTLIMGYASEGR-IEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEE 437

Query: 241 AIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGK 300
           A  +   +   GL PD VT+ A +  Y+K+GK+ E    ++  +  G  P+   ++VL  
Sbjct: 438 ASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLIN 497

Query: 301 MFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTP 360
              ++G+      + + + +LGV P++   +  +  + K G+   A  +F E+ E GL P
Sbjct: 498 GHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVP 557

Query: 361 DEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLF 420
           D  T ++LI  + K    + A EL + M       +  +YN L++     G ++ A +LF
Sbjct: 558 DVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLF 617

Query: 421 EDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK 480
           + M      +PD+ +Y+ M++ Y    NV  A  LF EM   GV  +      L+    K
Sbjct: 618 DGMP-EKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCK 676

Query: 481 ARRIDDLVRVFGVSIDRG 498
              ++  + +F   + +G
Sbjct: 677 EGDMEKAMNLFREMLQKG 694



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 151/325 (46%), Gaps = 2/325 (0%)

Query: 177 IKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCN 236
           ++ +NL P   + Y   +  L   +   L  +L  +M  + ++ + + YST+I       
Sbjct: 340 MEKRNLVP-SAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEG 398

Query: 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS 296
             +EA    + M  +G+ PD   Y+AI+   +K+GK+EE  +        G KPD + F 
Sbjct: 399 RIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFG 458

Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356
                + ++G          EM   G+ PN  +Y  L+    KAG    A S+F  +   
Sbjct: 459 AFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHAL 518

Query: 357 GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEA 416
           G+ PD +T +A I    K    ++AL+++  ++E     D   Y++L++     G VE+A
Sbjct: 519 GVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKA 578

Query: 417 ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
             L ++M L     P+ + Y A+++     G++  A +LF+ M E G+  + +  + +I 
Sbjct: 579 FELHDEMCLKGIA-PNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMID 637

Query: 477 CLGKARRIDDLVRVFGVSIDRGVKP 501
              K+  + +   +F     +GV+P
Sbjct: 638 GYCKSENVAEAFSLFHEMPSKGVQP 662



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 163/370 (44%), Gaps = 38/370 (10%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           Q++   F+ +K + L P +   Y+  +       + +   +L +EM    I  +   Y+ 
Sbjct: 541 QEALKVFSELKEKGLVP-DVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNA 599

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           ++    +      A + F+ M + GL PD VTYS ++D Y KS  V E  SL+    + G
Sbjct: 600 LVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKG 659

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
            +P    ++ L     + GD +    + +EM   G    L  +NTL++   K+ K   A 
Sbjct: 660 VQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTL-SFNTLIDGYCKSCKIQEAS 718

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
            LF EM+   + PD  T T +I  + KA   ++A  L++ M+E    +D + Y +L+   
Sbjct: 719 QLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGY 778

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML-----------------NIYGSG---- 446
             +G   E   LFE M ++   KPD  +Y  ++                  + G G    
Sbjct: 779 NKLGQSSEVFALFEKM-VAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTK 837

Query: 447 GNVDN--------------AIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFG 492
           G + +              A +L +EM ELG+  ++  C+ L++   +A ++D+  RVF 
Sbjct: 838 GTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFE 897

Query: 493 VSIDRGVKPD 502
                G+ PD
Sbjct: 898 GVKSLGLVPD 907



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 94/367 (25%), Positives = 157/367 (42%), Gaps = 46/367 (12%)

Query: 184 PMETIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
           P+  I YNV +  L +FG+  +  E L   M++   + ++ T+  +I    R +    A+
Sbjct: 276 PINLITYNVLIHGLCKFGKMEKAAEILKG-MITLGCKPNSRTFCLLIEGYCREHNMGRAL 334

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
           E  + M K  L+P  V+Y A+++       +     L E+   SG KP+ + +S L   +
Sbjct: 335 ELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGY 394

Query: 303 GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
              G  +  R +L  M   GV P++  YN ++  + KAGK   A +   E+   GL PD 
Sbjct: 395 ASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDA 454

Query: 363 KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED 422
            T  A I  Y K                                    G + EA + F++
Sbjct: 455 VTFGAFILGYSKT-----------------------------------GKMTEAAKYFDE 479

Query: 423 MKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKAR 482
           M L     P+N  YT ++N +   GN+  A+ +F  +  LGV  +V  C+  I  L K  
Sbjct: 480 M-LDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNG 538

Query: 483 RIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI-----TCLQQANPKLV 537
           R+ + ++VF    ++G+ PD      L+S    C+  E V K        CL+   P + 
Sbjct: 539 RVQEALKVFSELKEKGLVPDVFTYSSLIS--GFCKQGE-VEKAFELHDEMCLKGIAPNIF 595

Query: 538 AFLNLIE 544
            +  L++
Sbjct: 596 IYNALVD 602



 Score = 40.8 bits (94), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 2/98 (2%)

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
           + EA+  FE+M+ +   KPD  + +A+++ +   G++D  + + + M   G+ IN++   
Sbjct: 225 MNEAKLTFEEMQKTGL-KPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYN 283

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
            LI  L K  +++    +    I  G KP+ R   CLL
Sbjct: 284 VLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTF-CLL 320


>gi|225430498|ref|XP_002283327.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic [Vitis vinifera]
 gi|296082142|emb|CBI21147.3| unnamed protein product [Vitis vinifera]
          Length = 1113

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 102/366 (27%), Positives = 172/366 (46%), Gaps = 19/366 (5%)

Query: 128 ARKLNDCDNTEEAFLRAITEIPHQPTRENALLILNSLKFWQKSYF-----FFNWIKSQNL 182
           A KLN   N +E FL+ +    H+P R   + +L+  KF           F++ +++   
Sbjct: 310 AGKLN---NAKELFLK-MKASSHKPDRVTYITLLD--KFSDHGDLDAIKEFWSEMEADGY 363

Query: 183 FP---METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFD 239
            P     TI  +   K  +    F  ++ +  + V+  +     TY+T+I    R N  D
Sbjct: 364 LPDVVTFTILIDALCKVGKVDEAFGTLDVMKKQGVAPNLH----TYNTLICGLLRLNRLD 419

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           EA+E F  M   GL     TY   +D Y KSG+  + +  +E+   +G  P+ +A +   
Sbjct: 420 EALELFNSMESLGLETTAYTYILFIDYYGKSGESGKAIKTFEKMKTNGIVPNIVACNASL 479

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
               E G  +  +     +K  G+ P+ + YN L+   GKAG+   A  L  EM E+G  
Sbjct: 480 YSLAEQGRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEENGCD 539

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
           P+   + +LI    KA    +A ++++RM+E K     + YNTLL      G V+EA  L
Sbjct: 540 PEVVIINSLIDTLYKADRVDEAWKMFQRMKEMKLAPTVVTYNTLLAGLGKEGRVQEATAL 599

Query: 420 FEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479
           F+ M ++D C P+  S+  +L+     G VD A+++   M+E+    +V+    +I  L 
Sbjct: 600 FKGM-IADDCPPNTISFNTLLDCLCKNGEVDLALKMLFRMTEMNCFPDVLTYNTVIYGLI 658

Query: 480 KARRID 485
           K  R++
Sbjct: 659 KENRVN 664



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 84/271 (30%), Positives = 130/271 (47%), Gaps = 1/271 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D +TY+ +I         + A E F +M  +   PD VTY  +LD ++  G ++ +   +
Sbjct: 296 DVVTYTVLIDALCNAGKLNNAKELFLKMKASSHKPDRVTYITLLDKFSDHGDLDAIKEFW 355

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
               A G+ PD + F++L     + G  D     L  MK  GV PNL  YNTL+  + + 
Sbjct: 356 SEMEADGYLPDVVTFTILIDALCKVGKVDEAFGTLDVMKKQGVAPNLHTYNTLICGLLRL 415

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
            +   A  LF+ M   GL     T    I  YGK+  +  A++ +E+M+ N    + +  
Sbjct: 416 NRLDEALELFNSMESLGLETTAYTYILFIDYYGKSGESGKAIKTFEKMKTNGIVPNIVAC 475

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           N  L   A+ G +EEA+  F  +K      PD  +Y  ++  YG  G VD+AI+L  EM 
Sbjct: 476 NASLYSLAEQGRLEEAKEFFNGLKKCGL-APDAITYNILMRCYGKAGRVDDAIKLLSEME 534

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           E G    V+    LI  L KA R+D+  ++F
Sbjct: 535 ENGCDPEVVIINSLIDTLYKADRVDEAWKMF 565



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 94/339 (27%), Positives = 160/339 (47%), Gaps = 1/339 (0%)

Query: 153 TRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANE 212
           + E    +L S+    +++ FFN +         T   N  ++ LR  R+ + +  + N 
Sbjct: 88  SSEEVYRVLKSISDPNQAFSFFNSVAEMPRVIHTTETCNYVLEMLRAHRRVEDMVVVFNL 147

Query: 213 MVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK 272
           M    I+    TY TI           EA    E+M K G + +  +Y  ++ +  KSG 
Sbjct: 148 MQKQIIKRSINTYLTIFKVLYIRGGLREAPVALEKMRKVGFVLNGYSYIGLIHLLLKSGF 207

Query: 273 VEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNT 332
             E L +Y R V+ G KP    +S L    G+  D + +  +LQEM+SLG++PN+  +  
Sbjct: 208 CREALKVYRRMVSEGIKPSLKTYSALMVALGKRRDIETVMGLLQEMESLGLRPNIYTFTI 267

Query: 333 LLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENK 392
            +  +G+AGK   A  +   M ++G  PD  T T LI     A    +A EL+ +M+ + 
Sbjct: 268 CIRILGRAGKIDEAYGILKRMDDAGCGPDVVTYTVLIDALCNAGKLNNAKELFLKMKASS 327

Query: 393 WPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNA 452
              D + Y TLL+  +D G ++  +  + +M+   Y  PD  ++T +++     G VD A
Sbjct: 328 HKPDRVTYITLLDKFSDHGDLDAIKEFWSEMEADGYL-PDVVTFTILIDALCKVGKVDEA 386

Query: 453 IELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
               + M + GVA N+     LI  L +  R+D+ + +F
Sbjct: 387 FGTLDVMKKQGVAPNLHTYNTLICGLLRLNRLDEALELF 425



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/313 (27%), Positives = 143/313 (45%), Gaps = 1/313 (0%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           Y+  M +L   R  + +  L  EM S  +  +  T++  I    R    DEA    +RM 
Sbjct: 230 YSALMVALGKRRDIETVMGLLQEMESLGLRPNIYTFTICIRILGRAGKIDEAYGILKRMD 289

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
             G  PD VTY+ ++D    +GK+     L+ +  AS  KPD + +  L   F + GD D
Sbjct: 290 DAGCGPDVVTYTVLIDALCNAGKLNNAKELFLKMKASSHKPDRVTYITLLDKFSDHGDLD 349

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
            I+    EM++ G  P++V +  L++A+ K GK   A    D M + G+ P+  T   LI
Sbjct: 350 AIKEFWSEMEADGYLPDVVTFTILIDALCKVGKVDEAFGTLDVMKKQGVAPNLHTYNTLI 409

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
               +     +ALEL+  M           Y   ++     G   +A + FE MK ++  
Sbjct: 410 CGLLRLNRLDEALELFNSMESLGLETTAYTYILFIDYYGKSGESGKAIKTFEKMK-TNGI 468

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
            P+  +  A L      G ++ A E F  + + G+A + +    L++C GKA R+DD ++
Sbjct: 469 VPNIVACNASLYSLAEQGRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIK 528

Query: 490 VFGVSIDRGVKPD 502
           +     + G  P+
Sbjct: 529 LLSEMEENGCDPE 541



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 158/323 (48%), Gaps = 5/323 (1%)

Query: 140  AFLRAITEIPHQPTRENALLILNSL---KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKS 196
             FL+        P+ E    +++ L   +  + ++  F  +K+    P +   YN+ + +
Sbjct: 774  VFLKLTKSFCITPSLEAYNSLIDGLLKARLTEMAWGLFYKMKNAGCTP-DVFTYNLFLDA 832

Query: 197  LRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPD 256
            L    + + +  L  EM+    + + IT++ +I    + N  D+AI+ +  +      P 
Sbjct: 833  LGKSGKIKELFDLYEEMLFRGCKPNTITHNIVIFGLVKSNSLDKAIDLYYDLMSGDFSPT 892

Query: 257  EVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQ 316
              TY  ++D   K G++EE    +E  +  G  P+   +++L   FG+ GD +    + +
Sbjct: 893  PWTYGPLIDGLLKLGRLEEAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGDVETACELFR 952

Query: 317  EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
             M   G++P+L  Y+ +++ +   GK   A   F+E+  SGL PD      +I   G+++
Sbjct: 953  RMVKEGIRPDLKSYSIMVDCLCMVGKVDDALHYFEELKLSGLDPDLVCYNLMINGLGRSQ 1012

Query: 377  WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY 436
              ++AL L++ MR      D   YN L+      G+VEEA +++E+++L    +P+ ++Y
Sbjct: 1013 RVEEALSLFDEMRNRGITPDLYTYNALILNLGIAGMVEEAGKMYEELQLKGL-EPNVFTY 1071

Query: 437  TAMLNIYGSGGNVDNAIELFEEM 459
             A++  +   GN D A  ++++M
Sbjct: 1072 NALIRGHSMSGNPDRAYAVYKKM 1094



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 141/316 (44%), Gaps = 40/316 (12%)

Query: 224  TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
             Y+++I    +  L + A   F +M   G  PD  TY+  LD   KSGK++E+  LYE  
Sbjct: 790  AYNSLIDGLLKARLTEMAWGLFYKMKNAGCTPDVFTYNLFLDALGKSGKIKELFDLYEEM 849

Query: 284  VASGWKPDPIAFSVLGKMFG-----------------ESGDY-----------DGI---- 311
            +  G KP+ I  +++  +FG                  SGD+           DG+    
Sbjct: 850  LFRGCKPNTITHNIV--IFGLVKSNSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLLKLG 907

Query: 312  -----RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
                 +   +EM   G  PN  +YN L+   GK G    A  LF  MV+ G+ PD K+ +
Sbjct: 908  RLEEAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGDVETACELFRRMVKEGIRPDLKSYS 967

Query: 367  ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
             ++          DAL  +E ++ +    D + YN ++N       VEEA  LF++M+ +
Sbjct: 968  IMVDCLCMVGKVDDALHYFEELKLSGLDPDLVCYNLMINGLGRSQRVEEALSLFDEMR-N 1026

Query: 427  DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
                PD Y+Y A++   G  G V+ A +++EE+   G+  NV     LI+    +   D 
Sbjct: 1027 RGITPDLYTYNALILNLGIAGMVEEAGKMYEELQLKGLEPNVFTYNALIRGHSMSGNPDR 1086

Query: 487  LVRVFGVSIDRGVKPD 502
               V+   +  G +P+
Sbjct: 1087 AYAVYKKMMVGGCRPN 1102



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 124/255 (48%), Gaps = 1/255 (0%)

Query: 187  TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
            TI +N+ +  L           L  +++S +      TY  +I    +    +EA ++FE
Sbjct: 858  TITHNIVIFGLVKSNSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLLKLGRLEEAKQFFE 917

Query: 247  RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
             M   G MP+   Y+ +++ + K G VE    L+ R V  G +PD  ++S++       G
Sbjct: 918  EMLDYGCMPNCPLYNILMNGFGKQGDVETACELFRRMVKEGIRPDLKSYSIMVDCLCMVG 977

Query: 307  DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
              D   +  +E+K  G+ P+LV YN ++  +G++ +   A SLFDEM   G+TPD  T  
Sbjct: 978  KVDDALHYFEELKLSGLDPDLVCYNLMINGLGRSQRVEEALSLFDEMRNRGITPDLYTYN 1037

Query: 367  ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
            ALI   G A   ++A +++E ++      +   YN L+   +  G  + A  +++ M + 
Sbjct: 1038 ALILNLGIAGMVEEAGKMYEELQLKGLEPNVFTYNALIRGHSMSGNPDRAYAVYKKMMVG 1097

Query: 427  DYCKPDNYSYTAMLN 441
              C+P+  ++  + N
Sbjct: 1098 G-CRPNTGTFAQLPN 1111



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 150/334 (44%), Gaps = 3/334 (0%)

Query: 213 MVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK 272
           MVS  I+    TYS ++    +    +  +   + M   GL P+  T++  + +  ++GK
Sbjct: 218 MVSEGIKPSLKTYSALMVALGKRRDIETVMGLLQEMESLGLRPNIYTFTICIRILGRAGK 277

Query: 273 VEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNT 332
           ++E   + +R   +G  PD + ++VL      +G  +  + +  +MK+   +P+ V Y T
Sbjct: 278 IDEAYGILKRMDDAGCGPDVVTYTVLIDALCNAGKLNNAKELFLKMKASSHKPDRVTYIT 337

Query: 333 LLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENK 392
           LL+     G     +  + EM   G  PD  T T LI    K     +A    + M++  
Sbjct: 338 LLDKFSDHGDLDAIKEFWSEMEADGYLPDVVTFTILIDALCKVGKVDEAFGTLDVMKKQG 397

Query: 393 WPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNA 452
              +   YNTL+     +  ++EA  LF  M+ S   +   Y+Y   ++ YG  G    A
Sbjct: 398 VAPNLHTYNTLICGLLRLNRLDEALELFNSME-SLGLETTAYTYILFIDYYGKSGESGKA 456

Query: 453 IELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSV 512
           I+ FE+M   G+  N++ C   +  L +  R+++    F      G+ PD      L+  
Sbjct: 457 IKTFEKMKTNGIVPNIVACNASLYSLAEQGRLEEAKEFFNGLKKCGLAPDAITYNILMRC 516

Query: 513 VSLCETSEDVGKVITCLQQ--ANPKLVAFLNLIE 544
                  +D  K+++ +++   +P++V   +LI+
Sbjct: 517 YGKAGRVDDAIKLLSEMEENGCDPEVVIINSLID 550



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 91/355 (25%), Positives = 152/355 (42%), Gaps = 22/355 (6%)

Query: 116 SYNPRVRDLKLFARKLNDCDNTEEAF-----LRAITEIPHQPTRENALLILNSLKFWQKS 170
            Y P V    +    L      +EAF     ++     P+  T    +  L  L    ++
Sbjct: 362 GYLPDVVTFTILIDALCKVGKVDEAFGTLDVMKKQGVAPNLHTYNTLICGLLRLNRLDEA 421

Query: 171 YFFFNWIKSQNLFPMETIFYNVTM------KSLRFGRQFQLIEQL-ANEMVSNEIELDNI 223
              FN ++S  L   ET  Y   +      KS   G+  +  E++  N +V N +  +  
Sbjct: 422 LELFNSMESLGL---ETTAYTYILFIDYYGKSGESGKAIKTFEKMKTNGIVPNIVACNAS 478

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
            YS     A++  L +EA E+F  + K GL PD +TY+ ++  Y K+G+V++ + L    
Sbjct: 479 LYSL----AEQGRL-EEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEM 533

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
             +G  P+ +  + L     ++   D    + Q MK + + P +V YNTLL  +GK G+ 
Sbjct: 534 EENGCDPEVVIINSLIDTLYKADRVDEAWKMFQRMKEMKLAPTVVTYNTLLAGLGKEGRV 593

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
             A +LF  M+     P+  +   L+    K      AL++  RM E     D + YNT+
Sbjct: 594 QEATALFKGMIADDCPPNTISFNTLLDCLCKNGEVDLALKMLFRMTEMNCFPDVLTYNTV 653

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458
           +        V  A  LF  MK   Y  PD  +   +L      G +++A  + +E
Sbjct: 654 IYGLIKENRVNYAFWLFHQMKKVIY--PDYVTLCTLLPGVIKDGRIEDAFRVAKE 706



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 140/297 (47%), Gaps = 3/297 (1%)

Query: 253  LMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIR 312
            + P    Y++++D   K+   E    L+ +   +G  PD   +++     G+SG    + 
Sbjct: 784  ITPSLEAYNSLIDGLLKARLTEMAWGLFYKMKNAGCTPDVFTYNLFLDALGKSGKIKELF 843

Query: 313  YVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIY 372
             + +EM   G +PN + +N ++  + K+     A  L+ +++    +P   T   LI   
Sbjct: 844  DLYEEMLFRGCKPNTITHNIVIFGLVKSNSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGL 903

Query: 373  GKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPD 432
             K    ++A + +E M +     +  LYN L+N     G VE A  LF  M + +  +PD
Sbjct: 904  LKLGRLEEAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGDVETACELFRRM-VKEGIRPD 962

Query: 433  NYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFG 492
              SY+ M++     G VD+A+  FEE+   G+  +++    +I  LG+++R+++ + +F 
Sbjct: 963  LKSYSIMVDCLCMVGKVDDALHYFEELKLSGLDPDLVCYNLMINGLGRSQRVEEALSLFD 1022

Query: 493  VSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAFLNLIEDNS 547
               +RG+ PD      L+  + +    E+ GK+   LQ     P +  +  LI  +S
Sbjct: 1023 EMRNRGITPDLYTYNALILNLGIAGMVEEAGKMYEELQLKGLEPNVFTYNALIRGHS 1079



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 88/392 (22%), Positives = 154/392 (39%), Gaps = 76/392 (19%)

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           P  TI +N  +  L    +  L  ++   M       D +TY+T+I    + N  + A  
Sbjct: 609 PPNTISFNTLLDCLCKNGEVDLALKMLFRMTEMNCFPDVLTYNTVIYGLIKENRVNYAFW 668

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV--------ASGWKP----- 290
            F +M K  + PD VT   +L    K G++E+   + +  V         S W+      
Sbjct: 669 LFHQMKKV-IYPDYVTLCTLLPGVIKDGRIEDAFRVAKEFVHHVGDHADGSFWEDLMGGI 727

Query: 291 ------------------------DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
                                   D +   ++  +       D     L+  KS  + P+
Sbjct: 728 LIEAEIGQSILFAESLVCNTICEDDSVLIPLVKFLCKHGKAVDAYNVFLKLTKSFCITPS 787

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
           L  YN+L++ + KA    +A  LF +M  +G TPD  T    +   GK+   K+  +L+E
Sbjct: 788 LEAYNSLIDGLLKARLTEMAWGLFYKMKNAGCTPDVFTYNLFLDALGKSGKIKELFDLYE 847

Query: 387 RM-----RENKWPMDFIL------------------------------YNTLLNMCADIG 411
            M     + N    + ++                              Y  L++    +G
Sbjct: 848 EMLFRGCKPNTITHNIVIFGLVKSNSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLLKLG 907

Query: 412 LVEEAERLFEDMKLSDY-CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG 470
            +EEA++ FE+M   DY C P+   Y  ++N +G  G+V+ A ELF  M + G+  ++  
Sbjct: 908 RLEEAKQFFEEM--LDYGCMPNCPLYNILMNGFGKQGDVETACELFRRMVKEGIRPDLKS 965

Query: 471 CTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            + ++ CL    ++DD +  F      G+ PD
Sbjct: 966 YSIMVDCLCMVGKVDDALHYFEELKLSGLDPD 997



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 83/172 (48%), Gaps = 5/172 (2%)

Query: 130  KLNDCDNTEEAFLRAITEIPHQPTRENALLILNSLKFWQK---SYFFFNWIKSQNLFPME 186
            K  D +   E F R + E   +P  ++  ++++ L    K   +  +F  +K   L P +
Sbjct: 940  KQGDVETACELFRRMVKE-GIRPDLKSYSIMVDCLCMVGKVDDALHYFEELKLSGLDP-D 997

Query: 187  TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
             + YN+ +  L   ++ +    L +EM +  I  D  TY+ +I       + +EA + +E
Sbjct: 998  LVCYNLMINGLGRSQRVEEALSLFDEMRNRGITPDLYTYNALILNLGIAGMVEEAGKMYE 1057

Query: 247  RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
             +   GL P+  TY+A++  ++ SG  +   ++Y++ +  G +P+   F+ L
Sbjct: 1058 ELQLKGLEPNVFTYNALIRGHSMSGNPDRAYAVYKKMMVGGCRPNTGTFAQL 1109


>gi|11994279|dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
          Length = 648

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/289 (29%), Positives = 148/289 (51%), Gaps = 4/289 (1%)

Query: 199 FGRQFQLIE--QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPD 256
           F ++ +L+E  +L NEM++  I  D ITY+++I    + N   EA + F+ M   G  PD
Sbjct: 354 FVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPD 413

Query: 257 EVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQ 316
            VTYS +++ Y K+ +V++ + L+    + G  P+ I ++ L   F +SG  +  + + Q
Sbjct: 414 IVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQ 473

Query: 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
           EM S GV P++V Y  LL+ +   G+   A  +F++M +S +T        +I     A 
Sbjct: 474 EMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNAS 533

Query: 377 WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY 436
              DA  L+  + +     D + YN ++      G + EA+ LF  MK  D C PD+++Y
Sbjct: 534 KVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMK-EDGCTPDDFTY 592

Query: 437 TAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
             ++  +  G  + +++EL EEM   G + +      +I  L   RR+D
Sbjct: 593 NILIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKMVIDMLSD-RRLD 640



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 86/312 (27%), Positives = 148/312 (47%), Gaps = 3/312 (0%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L + MV  +   D +T ST+I          EA+   +RM + G  PDEVTY  +L+   
Sbjct: 191 LVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLC 250

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           KSG     L L+ +      K   + +S++     + G +D    +  EM+  G++ ++V
Sbjct: 251 KSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVV 310

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            Y++L+  +   GK      +  EM+   + PD  T +ALI ++ K     +A EL+  M
Sbjct: 311 TYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEM 370

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
                  D I YN+L++       + EA ++F D+ +S  C+PD  +Y+ ++N Y     
Sbjct: 371 ITRGIAPDTITYNSLIDGFCKENCLHEANQMF-DLMVSKGCEPDIVTYSILINSYCKAKR 429

Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGC 508
           VD+ + LF E+S  G+  N +    L+    ++ +++    +F   + RGV P     G 
Sbjct: 430 VDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGI 489

Query: 509 LLSVVSLCETSE 520
           LL    LC+  E
Sbjct: 490 LLD--GLCDNGE 499



 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 139/294 (47%), Gaps = 1/294 (0%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  +M    I+   + YS +I    +   FD+A+  F  M   G+  D VTYS+++    
Sbjct: 261 LFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLC 320

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
             GK ++   +    +     PD + FS L  +F + G     + +  EM + G+ P+ +
Sbjct: 321 NDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTI 380

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            YN+L++   K      A  +FD MV  G  PD  T + LI  Y KA+   D + L+  +
Sbjct: 381 TYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREI 440

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
                  + I YNTL+      G +  A+ LF++M +S    P   +Y  +L+     G 
Sbjct: 441 SSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEM-VSRGVPPSVVTYGILLDGLCDNGE 499

Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           ++ A+E+FE+M +  + + +     +I  +  A ++DD   +F    D+GVKPD
Sbjct: 500 LNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPD 553



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 82/332 (24%), Positives = 150/332 (45%), Gaps = 5/332 (1%)

Query: 172 FFFNWIKSQNLFPMET-IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIIT 230
            F + I+S+   P+ T I +N    ++   +Q+ L+      M  N IE D  T + +I 
Sbjct: 86  LFESMIQSR---PLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMIN 142

Query: 231 CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
           C  R      A     R +K G  PD +T+S +++ +   G+V E ++L +R V    +P
Sbjct: 143 CYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRP 202

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
           D +  S L       G       ++  M   G QP+ V Y  +L  + K+G   LA  LF
Sbjct: 203 DLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLF 262

Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
            +M E  +       + +I    K     DAL L+  M       D + Y++L+    + 
Sbjct: 263 RKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCND 322

Query: 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG 470
           G  ++  ++  +M +     PD  +++A+++++   G +  A EL+ EM   G+A + + 
Sbjct: 323 GKWDDGAKMLREM-IGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTIT 381

Query: 471 CTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
              LI    K   + +  ++F + + +G +PD
Sbjct: 382 YNSLIDGFCKENCLHEANQMFDLMVSKGCEPD 413



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 120/257 (46%), Gaps = 3/257 (1%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            +N + ++ + P +TI YN  +             Q+ + MVS   E D +TYS +I   
Sbjct: 366 LYNEMITRGIAP-DTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSY 424

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +    D+ +  F  +   GL+P+ +TY+ ++  + +SGK+     L++  V+ G  P  
Sbjct: 425 CKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSV 484

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           + + +L     ++G+ +    + ++M+   +   + +YN ++  M  A K   A SLF  
Sbjct: 485 VTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCS 544

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM-CADIG 411
           + + G+ PD  T   +I    K     +A  L+ +M+E+    D   YN L+       G
Sbjct: 545 LSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSG 604

Query: 412 LVEEAERLFEDMKLSDY 428
           L+   E L E+MK+  +
Sbjct: 605 LISSVE-LIEEMKVCGF 620



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 104/231 (45%), Gaps = 1/231 (0%)

Query: 272 KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYN 331
           KV + + L+E  + S   P PI F+ L      +  YD +    + M+  G++ ++    
Sbjct: 79  KVNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMT 138

Query: 332 TLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN 391
            ++    +  K   A S+     + G  PD  T + L+  +       +A+ L +RM E 
Sbjct: 139 IMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEM 198

Query: 392 KWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDN 451
           K   D +  +TL+N     G V EA  L + M    + +PD  +Y  +LN     GN   
Sbjct: 199 KQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGF-QPDEVTYGPVLNRLCKSGNSAL 257

Query: 452 AIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           A++LF +M E  +  +V+  + +I  L K    DD + +F     +G+K D
Sbjct: 258 ALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKAD 308


>gi|410110149|gb|AFV61154.1| pentatricopeptide repeat-containing protein 123, partial
           [Xeroaloysia ovatifolia]
          Length = 431

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/300 (30%), Positives = 152/300 (50%), Gaps = 1/300 (0%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
           +EM    +  D  TYST+IT   +  LFD A+ W ++M +  +  D V YS ++++  K 
Sbjct: 1   DEMRERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKL 60

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
               + +S++ R   SG+ PD +A++ +  +FG++  +   R ++ EM++ GV PN   Y
Sbjct: 61  CDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASY 120

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
            TLL    +  K   A S+F EM E     D  T   +I +YG+   AK+A +L+  MR+
Sbjct: 121 TTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK 180

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
                + + YNTLL +  D  L  EA  LF  M+  +  + +  +Y +M+ IYG     +
Sbjct: 181 MGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQ-NVVTYNSMMMIYGKTLEHE 239

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
            A  L +EM   G+  N +  + +I   GKA ++D    +F      GV+ D  L   ++
Sbjct: 240 KANNLIQEMQNRGIEPNSITYSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTMI 299



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 163/345 (47%), Gaps = 6/345 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K     P + + YN  +      + F+    L +EM +  +  +  +Y+
Sbjct: 63  YSKAISIFSRLKRSGFTP-DLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYT 121

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY + G  +E   L+      
Sbjct: 122 TLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 181

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   +  N+V YN+++   GK  +   A
Sbjct: 182 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEKA 241

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GKA     A  L++++R +   +D +LY T++  
Sbjct: 242 NNLIQEMQNRGIEPNSITYSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVA 301

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K      PDN      ++I    G ++ A  +F +  + G   
Sbjct: 302 YEKAGLVAHAKRLLHELK-----SPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVR 356

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
           ++     +I    K ++  ++V VF      G  PD  +   +L+
Sbjct: 357 DITVFERMIHLFSKYKKYANVVEVFDKMRGLGYFPDSNVIALVLN 401



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/267 (26%), Positives = 127/267 (47%), Gaps = 1/267 (0%)

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           + M +  L PD  TYS ++  + K G  +  LS  ++        D + +S L ++  + 
Sbjct: 1   DEMRERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKL 60

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
            DY     +   +K  G  P+LV YN ++   GKA     ARSL  EM  +G+ P+  + 
Sbjct: 61  CDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASY 120

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
           T L+ +Y + +   +AL ++  MRE K  +D    N ++++   +G+ +EA++LF  M+ 
Sbjct: 121 TTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK 180

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
               +P+  SY  +L +YG       AI LF  M    +  NV+    ++   GK    +
Sbjct: 181 MG-IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHE 239

Query: 486 DLVRVFGVSIDRGVKPDDRLCGCLLSV 512
               +     +RG++P+      ++S+
Sbjct: 240 KANNLIQEMQNRGIEPNSITYSTIISI 266



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 122/246 (49%), Gaps = 5/246 (2%)

Query: 218 IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL 277
           IE + ++Y+T++       LF EAI  F  M +  ++ + VTY++++ +Y K+ + E+  
Sbjct: 183 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEKAN 242

Query: 278 SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
           +L +     G +P+ I +S +  ++G++G  D    + Q+++S GV+ + V+Y T++ A 
Sbjct: 243 NLIQEMQNRGIEPNSITYSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAY 302

Query: 338 GKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDF 397
            KAG    A+ L  E+     +PD       I I   A   ++A  ++ +  +     D 
Sbjct: 303 EKAGLVAHAKRLLHELK----SPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVRDI 358

Query: 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE 457
            ++  ++++ +          +F+ M+   Y  PD+     +LN YG     D A  ++ 
Sbjct: 359 TVFERMIHLFSKYKKYANVVEVFDKMRGLGYF-PDSNVIALVLNAYGKLHEFDKANGVYM 417

Query: 458 EMSELG 463
           EM E+G
Sbjct: 418 EMQEVG 423



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 96/217 (44%), Gaps = 1/217 (0%)

Query: 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
           EM+   + P+   Y+TL+   GK G    A S   +M +  +  D    + LI++  K  
Sbjct: 2   EMRERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLC 61

Query: 377 WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY 436
               A+ ++ R++ + +  D + YN ++N+     L  EA  L  +M+ +    P+  SY
Sbjct: 62  DYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAG-VMPNTASY 120

Query: 437 TAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496
           T +L +Y        A+ +F EM E+   +++  C  +I   G+     +  ++F     
Sbjct: 121 TTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK 180

Query: 497 RGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN 533
            G++P+      LL V    E   +   +   +Q+ N
Sbjct: 181 MGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKN 217



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/242 (21%), Positives = 101/242 (41%), Gaps = 5/242 (2%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           P+  +    L +    + + ++   F  ++ +N+     + YN  M       + +    
Sbjct: 185 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQ-NVVTYNSMMMIYGKTLEHEKANN 243

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  EM +  IE ++ITYSTII+   +    D A   F+++  +G+  D+V Y  ++  Y 
Sbjct: 244 LIQEMQNRGIEPNSITYSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYE 303

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           K+G V       +R +     PD I       +   +G  +   YV ++    G   ++ 
Sbjct: 304 KAGLVAHA----KRLLHELKSPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVRDIT 359

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
           V+  ++    K  K      +FD+M   G  PD   +  ++  YGK      A  ++  M
Sbjct: 360 VFERMIHLFSKYKKYANVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANGVYMEM 419

Query: 389 RE 390
           +E
Sbjct: 420 QE 421


>gi|296083087|emb|CBI22491.3| unnamed protein product [Vitis vinifera]
          Length = 548

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 153/326 (46%), Gaps = 5/326 (1%)

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           +A+E   +M + G+ PD  TY+ +L  + K+GK +  + ++E     G KP+   F+ L 
Sbjct: 87  DALELKNQMVEKGIKPDVFTYTTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALI 146

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
           KM G  G +  +  V +++K+    P++V +NTLL   G+ G       +F EM  +G  
Sbjct: 147 KMHGNRGKFTEMMKVFEDIKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFV 206

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
           P+  T   LI  Y +      A+ +++RM E     D   YN +L   A  GL +++E++
Sbjct: 207 PERDTFNTLISSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAALARGGLWKQSEKV 266

Query: 420 FEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479
             +MK    CKP+  +Y ++L+ Y +G  ++    L EE+    +    +    L+    
Sbjct: 267 LAEMK-DGRCKPNELTYCSLLHAYANGKEIERMCALAEEIYSGIIEPRAVLLKTLVLVNS 325

Query: 480 KARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLV 537
           K   + +  R F     RG  PD      ++S+    +      +++ C+++    P L 
Sbjct: 326 KCDLLMETERAFLELRQRGFSPDITTLNAMVSIYGRRQMVAKANEILDCMKRGGFTPSLT 385

Query: 538 AFLNL--IEDNSTGFENIKEEFRNVI 561
            + +L  +   S  FE  +E  R ++
Sbjct: 386 TYNSLMYMYSRSANFERSEEILREIL 411



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 134/282 (47%), Gaps = 7/282 (2%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG---KVEEVLSLY 280
           T++T+I+   RC  FD+A+  ++RM + G+ PD  +Y+A+L   A+ G   + E+VL+  
Sbjct: 211 TFNTLISSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAALARGGLWKQSEKVLAEM 270

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
           + G     KP+ + +  L   +    + + +  + +E+ S  ++P  V+  TL+    K 
Sbjct: 271 KDGRC---KPNELTYCSLLHAYANGKEIERMCALAEEIYSGIIEPRAVLLKTLVLVNSKC 327

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
                    F E+ + G +PD  TL A++ IYG+ +    A E+ + M+   +      Y
Sbjct: 328 DLLMETERAFLELRQRGFSPDITTLNAMVSIYGRRQMVAKANEILDCMKRGGFTPSLTTY 387

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           N+L+ M +     E +E +  ++ L+   +PD  SY  ++  Y   G + +A  +  EM 
Sbjct: 388 NSLMYMYSRSANFERSEEILREI-LAKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEMR 446

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           E G A +++     I          + + V    I  G KP+
Sbjct: 447 ESGPAPDIITYNTFIASYAADSMFVEAIDVVCYMIKHGCKPN 488



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 61/265 (23%), Positives = 123/265 (46%), Gaps = 7/265 (2%)

Query: 166 FWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITY 225
            W++S      +K     P E + Y   + +   G++ + +  LA E+ S  IE   +  
Sbjct: 259 LWKQSEKVLAEMKDGRCKPNE-LTYCSLLHAYANGKEIERMCALAEEIYSGIIEPRAVLL 317

Query: 226 STIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS---GKVEEVLSLYER 282
            T++    +C+L  E    F  + + G  PD  T +A++ +Y +     K  E+L   +R
Sbjct: 318 KTLVLVNSKCDLLMETERAFLELRQRGFSPDITTLNAMVSIYGRRQMVAKANEILDCMKR 377

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
           G   G+ P    ++ L  M+  S +++    +L+E+ + G++P+++ YNT++ A  + G+
Sbjct: 378 G---GFTPSLTTYNSLMYMYSRSANFERSEEILREILAKGIRPDIISYNTVIYAYCRNGR 434

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
              A  +  EM ESG  PD  T    I  Y       +A+++   M ++    +   YN+
Sbjct: 435 MRDASRVLSEMRESGPAPDIITYNTFIASYAADSMFVEAIDVVCYMIKHGCKPNQSTYNS 494

Query: 403 LLNMCADIGLVEEAERLFEDMKLSD 427
           +++    +   +EA     +++  D
Sbjct: 495 IVDWYCKLNRRDEASMFVNNLRKLD 519



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 76/160 (47%), Gaps = 1/160 (0%)

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
           P  A  L ++MVE G+ PD  T T L+  + KA   K A++++E MR      +   +N 
Sbjct: 85  PPDALELKNQMVEKGIKPDVFTYTTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNA 144

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
           L+ M  + G   E  ++FED+K +  C PD  ++  +L+++G  G       +F+EM   
Sbjct: 145 LIKMHGNRGKFTEMMKVFEDIK-TFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRA 203

Query: 463 GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           G          LI    +    D  + V+   ++ GV PD
Sbjct: 204 GFVPERDTFNTLISSYSRCGSFDQAMAVYKRMLEAGVNPD 243



 Score = 45.1 bits (105), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 73/185 (39%), Gaps = 6/185 (3%)

Query: 119 PRVRDLKLFARKLNDCD---NTEEAFL--RAITEIPHQPTRENALLILNSLKFWQKSYFF 173
           PR   LK      + CD    TE AFL  R     P   T    + I    +   K+   
Sbjct: 312 PRAVLLKTLVLVNSKCDLLMETERAFLELRQRGFSPDITTLNAMVSIYGRRQMVAKANEI 371

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
            + +K     P  T  YN  M        F+  E++  E+++  I  D I+Y+T+I    
Sbjct: 372 LDCMKRGGFTPSLTT-YNSLMYMYSRSANFERSEEILREILAKGIRPDIISYNTVIYAYC 430

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
           R     +A      M ++G  PD +TY+  +  YA      E + +    +  G KP+  
Sbjct: 431 RNGRMRDASRVLSEMRESGPAPDIITYNTFIASYAADSMFVEAIDVVCYMIKHGCKPNQS 490

Query: 294 AFSVL 298
            ++ +
Sbjct: 491 TYNSI 495


>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
 gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
          Length = 581

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/343 (27%), Positives = 158/343 (46%), Gaps = 38/343 (11%)

Query: 213 MVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK 272
           M     E D +TYSTII+   +     EA+E  E M + G+ PD  TY+ I+D   ++GK
Sbjct: 1   MAEKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGK 60

Query: 273 VEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNT 332
           V+E   L+ + +  G   + +A++ L     +  + +    +L+EM S G +P+ + YNT
Sbjct: 61  VDEADELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNT 120

Query: 333 LLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER--MRE 390
           +L  + + GK   A+  FD M   G +PD      L+    K     +A  L++   M +
Sbjct: 121 ILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMAD 180

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY---------------------- 428
            K   D I YNTL++    +   +EA +LF+D+    Y                      
Sbjct: 181 RKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDE 240

Query: 429 ------------CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
                       C P+  +Y+ +L+ +   GN+   +EL+EEM+E   + +V+ C  +I 
Sbjct: 241 AEEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVID 300

Query: 477 CLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETS 519
            L KA+++DD  +V       G  PD      LL    LC+T+
Sbjct: 301 MLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLD--GLCKTN 341



 Score =  125 bits (314), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 94/361 (26%), Positives = 157/361 (43%), Gaps = 38/361 (10%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
           T+ YN  +  L      +   +L  EM S   E DNITY+TI++   R     EA ++F+
Sbjct: 80  TVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTILSGLCRMGKVSEAKQFFD 139

Query: 247 RM-------------------YKTG------------------LMPDEVTYSAILDVYAK 269
            M                   YK G                  + PD +TY+ ++D + +
Sbjct: 140 SMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPDLITYNTLIDGFCR 199

Query: 270 SGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVV 329
             K +E + L++  +A G+ PD + ++ +        + D    + ++M   G  PN   
Sbjct: 200 VEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVDSGCAPNGAT 259

Query: 330 YNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMR 389
           Y+ +L    + G       L++EM E   +PD     A+I +  KA+   DA ++ E M 
Sbjct: 260 YSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMS 319

Query: 390 ENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNV 449
           +     D + YN LL+      LV++A  LF  M + + C PD  SY+ +LN       V
Sbjct: 320 KIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTM-VDNGCAPDIVSYSVVLNGLCKTNKV 378

Query: 450 DNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCL 509
            +A  LF+ M E  +  +V+    L+  L KA ++D+   +  V  +  V PD   C  L
Sbjct: 379 HDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGVTCTTL 438

Query: 510 L 510
           +
Sbjct: 439 M 439



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/249 (29%), Positives = 123/249 (49%), Gaps = 1/249 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D +TY++I+    R +  DEA E F++M  +G  P+  TYS +L  + + G +   L LY
Sbjct: 221 DTVTYNSILLGLARKSNMDEAEEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELY 280

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
           E      + PD +  + +  M  ++   D    VL+EM  +G  P++V YN LL+ + K 
Sbjct: 281 EEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKT 340

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
                A  LF  MV++G  PD  + + ++    K     DA  L++RM E K   D + +
Sbjct: 341 NLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTF 400

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           N L++     G ++EA+ L + M   +   PD  + T +++        D A+ LF+ M 
Sbjct: 401 NILMDGLCKAGKLDEAKDLLDVMSEHNVL-PDGVTCTTLMHGLCRDKRTDEAVRLFQYMV 459

Query: 461 ELGVAINVM 469
           E G   +V+
Sbjct: 460 EKGTVADVL 468



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 150/337 (44%), Gaps = 2/337 (0%)

Query: 148 IPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIE 207
           +P   T  + LL L       ++   F  +      P    +  V     R G   + +E
Sbjct: 219 MPDTVTYNSILLGLARKSNMDEAEEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLE 278

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
            L  EM       D +  + +I    +    D+A +  E M K G +PD VTY+ +LD  
Sbjct: 279 -LYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGL 337

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            K+  V++   L+   V +G  PD +++SV+     ++      R +   M    + P++
Sbjct: 338 CKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDV 397

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
           V +N L++ + KAGK   A+ L D M E  + PD  T T L+    + +   +A+ L++ 
Sbjct: 398 VTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGVTCTTLMHGLCRDKRTDEAVRLFQY 457

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD-YCKPDNYSYTAMLNIYGSG 446
           M E     D + +N +L      G + +A   F+ M  SD    PD  +YT ++N     
Sbjct: 458 MVEKGTVADVLPHNIVLAGLCREGKLAQALLFFKSMVKSDGEFSPDVVTYTTLVNALIEA 517

Query: 447 GNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483
           G VD A++ F++M+  G A + +    L+  L K  R
Sbjct: 518 GRVDQAVDYFQQMTGSGCAPDYVAYNTLMNGLRKQGR 554



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 129/289 (44%), Gaps = 7/289 (2%)

Query: 179 SQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLF 238
           ++  F  + +  N  +  L   ++     ++  EM       D +TY+ ++    + NL 
Sbjct: 284 TEKRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLV 343

Query: 239 DEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
           D+A E F  M   G  PD V+YS +L+   K+ KV +   L++R +     PD + F++L
Sbjct: 344 DKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNIL 403

Query: 299 GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
                ++G  D  + +L  M    V P+ V   TL+  + +  +   A  LF  MVE G 
Sbjct: 404 MDGLCKAGKLDEAKDLLDVMSEHNVLPDGVTCTTLMHGLCRDKRTDEAVRLFQYMVEKGT 463

Query: 359 TPDEKTLTALIKIYGKARWAK--DALELWERM--RENKWPMDFILYNTLLNMCADIGLVE 414
             D   L   I + G  R  K   AL  ++ M   + ++  D + Y TL+N   + G V+
Sbjct: 464 VAD--VLPHNIVLAGLCREGKLAQALLFFKSMVKSDGEFSPDVVTYTTLVNALIEAGRVD 521

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           +A   F+ M  S  C PD  +Y  ++N     G    A  L + M E G
Sbjct: 522 QAVDYFQQMTGSG-CAPDYVAYNTLMNGLRKQGRHIQADRLTQAMKEKG 569



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 94/208 (45%), Gaps = 6/208 (2%)

Query: 159 LILNSLKFWQKSY---FFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVS 215
           ++LN L    K +     F+ +  + L P + + +N+ M  L    +    + L + M  
Sbjct: 367 VVLNGLCKTNKVHDARVLFDRMIERKLVP-DVVTFNILMDGLCKAGKLDEAKDLLDVMSE 425

Query: 216 NEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEE 275
           + +  D +T +T++    R    DEA+  F+ M + G + D + ++ +L    + GK+ +
Sbjct: 426 HNVLPDGVTCTTLMHGLCRDKRTDEAVRLFQYMVEKGTVADVLPHNIVLAGLCREGKLAQ 485

Query: 276 VLSLYERGVASG--WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTL 333
            L  ++  V S   + PD + ++ L     E+G  D      Q+M   G  P+ V YNTL
Sbjct: 486 ALLFFKSMVKSDGEFSPDVVTYTTLVNALIEAGRVDQAVDYFQQMTGSGCAPDYVAYNTL 545

Query: 334 LEAMGKAGKPGLARSLFDEMVESGLTPD 361
           +  + K G+   A  L   M E G   D
Sbjct: 546 MNGLRKQGRHIQADRLTQAMKEKGFLSD 573



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/278 (22%), Positives = 118/278 (42%), Gaps = 4/278 (1%)

Query: 121 VRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQ 180
           V D+   A+K++D     E  +  I  +P   T    L  L       K++  F+ +   
Sbjct: 298 VIDMLCKAKKVDDAHKVLEE-MSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDN 356

Query: 181 NLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDE 240
              P + + Y+V +  L    +      L + M+  ++  D +T++ ++    +    DE
Sbjct: 357 GCAP-DIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDE 415

Query: 241 AIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS-VLG 299
           A +  + M +  ++PD VT + ++    +  + +E + L++  V  G   D +  + VL 
Sbjct: 416 AKDLLDVMSEHNVLPDGVTCTTLMHGLCRDKRTDEAVRLFQYMVEKGTVADVLPHNIVLA 475

Query: 300 KMFGESGDYDGIRYVLQEMKSLG-VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
            +  E      + +    +KS G   P++V Y TL+ A+ +AG+   A   F +M  SG 
Sbjct: 476 GLCREGKLAQALLFFKSMVKSDGEFSPDVVTYTTLVNALIEAGRVDQAVDYFQQMTGSGC 535

Query: 359 TPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMD 396
            PD      L+    K      A  L + M+E  +  D
Sbjct: 536 APDYVAYNTLMNGLRKQGRHIQADRLTQAMKEKGFLSD 573


>gi|302763321|ref|XP_002965082.1| hypothetical protein SELMODRAFT_83088 [Selaginella moellendorffii]
 gi|300167315|gb|EFJ33920.1| hypothetical protein SELMODRAFT_83088 [Selaginella moellendorffii]
          Length = 731

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 104/404 (25%), Positives = 191/404 (47%), Gaps = 31/404 (7%)

Query: 160 ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIE 219
           IL+  + W+K+   F+W + Q+ +      YN+ +++L    +++L+++  +EM+   + 
Sbjct: 90  ILSEQRDWRKAIEVFSWFQRQDNYEANVFLYNILLRTLGRAAKWELLQKYWSEMLGERVP 149

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV--- 276
               TYS ++    R  + DEAI ++  M ++G+ PDEV  S  +++  + G +EE    
Sbjct: 150 PTIFTYSILVDVHGRAGMKDEAIRFYRHMIESGVEPDEVMVSTYMNLQRRFGDLEEAEKA 209

Query: 277 -LSLYERGVASGW--KPD-PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNT 332
              L+   +  G   +P+ P  ++ +   +GE   +     V  EM   GV+   V +N 
Sbjct: 210 FWGLFSENLVDGTTKRPENPETYNTMISFYGEHAKFAEGSKVFAEMMKAGVELTTVTFNA 269

Query: 333 LLEAMGKAGKPGLARSLFDEMVE-SGLTPDEKTLTALIKIYGKARWAKDALEL----WER 387
           ++   GKAG+   A  L   M +     PD  T  +LI++Y K     D LEL     ER
Sbjct: 270 MIHVYGKAGRTREAELLVTNMKQRKDCCPDVATYNSLIEMYVK----NDKLELVSGCLER 325

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           MR++    D + + TL++  A   +V +AE L ++M+ S +   D   YT M+ +Y    
Sbjct: 326 MRDSGVSADQVTFRTLISAYAANNVVWKAEALVQEMEGSGFL-IDQAMYTVMIAMYVRAR 384

Query: 448 NVDNAIELFEEMS-----ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           +V  A  +F  +      E+   + VM      +CL +AR       VF ++ + G+K  
Sbjct: 385 DVPKAESVFRFLHSRGGLEVSTYVGVMDVYAEHKCLDQAR------EVFELAKNAGLKTP 438

Query: 503 DRLCGCLLSVVSLCETSEDVGKVITCLQQ--ANPKLVAFLNLIE 544
             L   ++     C+   D   V   +++  A+P   +F +LI+
Sbjct: 439 S-LYNVMMKAYGACDRFTDAVTVFEAMEKDGASPNEASFNSLIQ 481



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 123/239 (51%), Gaps = 9/239 (3%)

Query: 225 YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
           Y+ ++     C+ F +A+  FE M K G  P+E ++++++ +  K G++ E+L      V
Sbjct: 441 YNVMMKAYGACDRFTDAVTVFEAMEKDGASPNEASFNSLIQLLCK-GRLLEILQRVLVLV 499

Query: 285 -ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
            A+G+KP   + S +   +G+ G       V +EM + GV+ +++ Y+ LL A  +AG  
Sbjct: 500 KAAGFKPSLASCSSVVSFYGDMGRVREAERVFKEMLASGVEADVICYSALLNAYAEAGFA 559

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
             A+   D +  +G  PD    T+++K+Y       +A +++E +  ++   D    NT+
Sbjct: 560 REAQQTLDSLKAAGFVPDTIVYTSMMKLYSNLGLIAEAEKIYEEI--SRLSPDVFAANTM 617

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKP--DNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           LN+    G+  EAE+LF  M+     KP  +  + T ML +Y   G ++  +++   MS
Sbjct: 618 LNLYIKSGMFTEAEQLFRAMQRG---KPGLNEVACTMMLKLYREAGKIEQGLDVARVMS 673



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 124/256 (48%), Gaps = 3/256 (1%)

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
           E L  EM  +   +D   Y+ +I    R     +A   F  ++  G + +  TY  ++DV
Sbjct: 355 EALVQEMEGSGFLIDQAMYTVMIAMYVRARDVPKAESVFRFLHSRGGL-EVSTYVGVMDV 413

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
           YA+   +++   ++E    +G K  P  ++V+ K +G    +     V + M+  G  PN
Sbjct: 414 YAEHKCLDQAREVFELAKNAGLKT-PSLYNVMMKAYGACDRFTDAVTVFEAMEKDGASPN 472

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
              +N+L++ + K     + + +   +  +G  P   + ++++  YG     ++A  +++
Sbjct: 473 EASFNSLIQLLCKGRLLEILQRVLVLVKAAGFKPSLASCSSVVSFYGDMGRVREAERVFK 532

Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
            M  +    D I Y+ LLN  A+ G   EA++  + +K + +  PD   YT+M+ +Y + 
Sbjct: 533 EMLASGVEADVICYSALLNAYAEAGFAREAQQTLDSLKAAGFV-PDTIVYTSMMKLYSNL 591

Query: 447 GNVDNAIELFEEMSEL 462
           G +  A +++EE+S L
Sbjct: 592 GLIAEAEKIYEEISRL 607



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 81/362 (22%), Positives = 153/362 (42%), Gaps = 47/362 (12%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEE----VLSL 279
           TY+T+I+       F E  + F  M K G+    VT++A++ VY K+G+  E    V ++
Sbjct: 231 TYNTMISFYGEHAKFAEGSKVFAEMMKAGVELTTVTFNAMIHVYGKAGRTREAELLVTNM 290

Query: 280 YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
            +R       PD   ++ L +M+ ++   + +   L+ M+  GV  + V + TL+ A   
Sbjct: 291 KQRKDCC---PDVATYNSLIEMYVKNDKLELVSGCLERMRDSGVSADQVTFRTLISAYAA 347

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
                 A +L  EM  SG   D+   T +I +Y +AR    A  ++ R   ++  ++   
Sbjct: 348 NNVVWKAEALVQEMEGSGFLIDQAMYTVMIAMYVRARDVPKAESVF-RFLHSRGGLEVST 406

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           Y  ++++ A+   +++A  +FE  K +    P    Y  M+  YG+     +A+ +FE M
Sbjct: 407 YVGVMDVYAEHKCLDQAREVFELAKNAGLKTPS--LYNVMMKAYGACDRFTDAVTVFEAM 464

Query: 460 SELGVAINVMGCTCLIQCLGKAR-----------------------------------RI 484
            + G + N      LIQ L K R                                   R+
Sbjct: 465 EKDGASPNEASFNSLIQLLCKGRLLEILQRVLVLVKAAGFKPSLASCSSVVSFYGDMGRV 524

Query: 485 DDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAFLNL 542
            +  RVF   +  GV+ D      LL+  +    + +  + +  L+ A   P  + + ++
Sbjct: 525 REAERVFKEMLASGVEADVICYSALLNAYAEAGFAREAQQTLDSLKAAGFVPDTIVYTSM 584

Query: 543 IE 544
           ++
Sbjct: 585 MK 586



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 43/204 (21%), Positives = 81/204 (39%), Gaps = 37/204 (18%)

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
           E++  EM+++ +E D I YS ++          EA +  + +   G +PD + Y++++ +
Sbjct: 528 ERVFKEMLASGVEADVICYSALLNAYAEAGFAREAQQTLDSLKAAGFVPDTIVYTSMMKL 587

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
           Y+  G + E   +YE    S   PD  A + +  ++ +SG +     + + M+      N
Sbjct: 588 YSNLGLIAEAEKIYEE--ISRLSPDVFAANTMLNLYIKSGMFTEAEQLFRAMQRGKPGLN 645

Query: 327 LVVYNTLLEAMGKAGK--------------------------------PGLARSLFD--- 351
            V    +L+   +AGK                                 GL R   +   
Sbjct: 646 EVACTMMLKLYREAGKIEQGLDVARVMSRRFLITDARAFNVVIAMYVKAGLMREALEALK 705

Query: 352 EMVESGLTPDEKTLTALIKIYGKA 375
           EM  +GL P   T +   +I  +A
Sbjct: 706 EMRRAGLVPSRSTFSCFEEILERA 729



 Score = 40.8 bits (94), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 75/165 (45%), Gaps = 3/165 (1%)

Query: 177 IKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCN 236
           +K+    P +TI Y   MK           E++  E+  + +  D    +T++    +  
Sbjct: 569 LKAAGFVP-DTIVYTSMMKLYSNLGLIAEAEKIYEEI--SRLSPDVFAANTMLNLYIKSG 625

Query: 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS 296
           +F EA + F  M +     +EV  + +L +Y ++GK+E+ L +           D  AF+
Sbjct: 626 MFTEAEQLFRAMQRGKPGLNEVACTMMLKLYREAGKIEQGLDVARVMSRRFLITDARAFN 685

Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG 341
           V+  M+ ++G        L+EM+  G+ P+   ++   E + +AG
Sbjct: 686 VVIAMYVKAGLMREALEALKEMRRAGLVPSRSTFSCFEEILERAG 730


>gi|359477372|ref|XP_002280003.2| PREDICTED: pentatricopeptide repeat-containing protein At3g23020
           [Vitis vinifera]
          Length = 881

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/313 (28%), Positives = 147/313 (46%), Gaps = 20/313 (6%)

Query: 159 LILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEI 218
           +IL     W+++   F W+K +  + +  I YN+ ++ L   R++  +E L +EM+S  I
Sbjct: 168 IILKEQSCWERALEIFEWLKKKGCYELNVIHYNIMLRILGKARKWHHVESLWDEMMSRGI 227

Query: 219 ELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS 278
              N TY T+I    +  L +EA+ W +RM K G+ PDEVT   ++  Y K+G+ ++   
Sbjct: 228 TPVNSTYGTLIDVYSKGGLTEEALHWLDRMNKQGMEPDEVTMGVVVQTYKKAGEFKKAEQ 287

Query: 279 LYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVV----YNTLL 334
            ++      W         LGK   + G                 QP++ +    YNTL+
Sbjct: 288 FFK-----NWS--------LGKTLKDEGKTS--EPTATSAVESASQPHVCLSSYTYNTLI 332

Query: 335 EAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWP 394
           +  GKAG+   A   F  M+  G+ P+  T   +I I G     ++A  L ++M E + P
Sbjct: 333 DTYGKAGQLREASDTFAWMLREGIIPNTVTFNTMIHICGNHGQLEEAASLMQKMEELRCP 392

Query: 395 MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIE 454
            D   YN L+++ A    ++ A   F+ MK +   +PD  SY  +L  +     V  A  
Sbjct: 393 PDTRTYNILISLHAKHNNIDRAASYFKKMKEARL-EPDLVSYRTLLYAFSIRHLVGEAEI 451

Query: 455 LFEEMSELGVAIN 467
           L  EM E G+ I+
Sbjct: 452 LVSEMDERGLEID 464



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 102/416 (24%), Positives = 177/416 (42%), Gaps = 49/416 (11%)

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
           L + TY+T+I    +     EA + F  M + G++P+ VT++ ++ +    G++EE  SL
Sbjct: 323 LSSYTYNTLIDTYGKAGQLREASDTFAWMLREGIIPNTVTFNTMIHICGNHGQLEEAASL 382

Query: 280 YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
            ++       PD   +++L  +  +  + D      ++MK   ++P+LV Y TLL A   
Sbjct: 383 MQKMEELRCPPDTRTYNILISLHAKHNNIDRAASYFKKMKEARLEPDLVSYRTLLYAFSI 442

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
               G A  L  EM E GL  DE T +AL ++Y +A   K +  LW R    +  M    
Sbjct: 443 RHLVGEAEILVSEMDERGLEIDEFTQSALTRMYIEAGMLKKSW-LWFRRFHLEGNMSSEC 501

Query: 400 YNTLLNMCADIGLVEEAERLF----EDMKLS------------------DYCK------- 430
           Y+  ++   + G + EAE+ F    E  KLS                    C+       
Sbjct: 502 YSANIDAYGERGHILEAEKAFLCCKESRKLSVLEFNVMIKAYGISNRYEKACQLIDSMEN 561

Query: 431 ----PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
               PD +SY +++ I  S      A     +M E  +  + +    +I    K  +++ 
Sbjct: 562 HGVLPDKFSYNSLIQILASADLPHKAKFYLMKMQETQLVSDCIPYCAVISSFIKLGQLEM 621

Query: 487 LVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFL--NLIE 544
              +F   I   V+PD  + G L++  +      DVG V   +   N    A L  N + 
Sbjct: 622 AEGLFKEMIGYNVQPDVVVYGILINAFA------DVGNVREAVNYVNALRNAGLPMNAVI 675

Query: 545 DNS-------TGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELL 593
            NS        G+    +E   +++ +EV       NC+ID+   R++ ++A E+ 
Sbjct: 676 YNSLIKLYTKVGYLEEAQEAYKMLQASEVGPDVYSSNCMIDLYSERSMVKQAEEIF 731



 Score = 97.4 bits (241), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/337 (21%), Positives = 153/337 (45%), Gaps = 38/337 (11%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           +NV +K+     +++   QL + M ++ +  D  +Y+++I      +L  +A  +  +M 
Sbjct: 536 FNVMIKAYGISNRYEKACQLIDSMENHGVLPDKFSYNSLIQILASADLPHKAKFYLMKMQ 595

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
           +T L+ D + Y A++  + K G++E    L+                             
Sbjct: 596 ETQLVSDCIPYCAVISSFIKLGQLEMAEGLF----------------------------- 626

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
                 +EM    VQP++VVY  L+ A    G    A +  + +  +GL  +     +LI
Sbjct: 627 ------KEMIGYNVQPDVVVYGILINAFADVGNVREAVNYVNALRNAGLPMNAVIYNSLI 680

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
           K+Y K  + ++A E ++ ++ ++   D    N ++++ ++  +V++AE +FE +K     
Sbjct: 681 KLYTKVGYLEEAQEAYKMLQASEVGPDVYSSNCMIDLYSERSMVKQAEEIFESLKRKG-- 738

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
             + +S+  ML +Y   G +  A ++ ++M ELG+  +++    ++       R  D V 
Sbjct: 739 DANEFSFAMMLCMYKRIGKLKEAFQIVQKMRELGLVTDLLSYNNVLGFYAMDGRFKDAVG 798

Query: 490 VFGVSIDRGVKPDDRLCGCLLSVVSLCET-SEDVGKV 525
            F   I+  ++PDD     L  V+  C    + VGK+
Sbjct: 799 TFKEMIEAAIQPDDCTFKSLGVVLVKCGIPKQAVGKL 835



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 83/374 (22%), Positives = 155/374 (41%), Gaps = 35/374 (9%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           F W+  + + P  T+ +N  +       Q +    L  +M       D  TY+ +I+   
Sbjct: 348 FAWMLREGIIP-NTVTFNTMIHICGNHGQLEEAASLMQKMEELRCPPDTRTYNILISLHA 406

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
           + N  D A  +F++M +  L PD V+Y  +L  ++    V E   L       G + D  
Sbjct: 407 KHNNIDRAASYFKKMKEARLEPDLVSYRTLLYAFSIRHLVGEAEILVSEMDERGLEIDEF 466

Query: 294 AFSVLGKMFGESG---------------------------DYDGIR-YVLQEMKSL---- 321
             S L +M+ E+G                           D  G R ++L+  K+     
Sbjct: 467 TQSALTRMYIEAGMLKKSWLWFRRFHLEGNMSSECYSANIDAYGERGHILEAEKAFLCCK 526

Query: 322 -GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380
              + +++ +N +++A G + +   A  L D M   G+ PD+ +  +LI+I   A     
Sbjct: 527 ESRKLSVLEFNVMIKAYGISNRYEKACQLIDSMENHGVLPDKFSYNSLIQILASADLPHK 586

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
           A     +M+E +   D I Y  +++    +G +E AE LF++M +    +PD   Y  ++
Sbjct: 587 AKFYLMKMQETQLVSDCIPYCAVISSFIKLGQLEMAEGLFKEM-IGYNVQPDVVVYGILI 645

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
           N +   GNV  A+     +   G+ +N +    LI+   K   +++    + +     V 
Sbjct: 646 NAFADVGNVREAVNYVNALRNAGLPMNAVIYNSLIKLYTKVGYLEEAQEAYKMLQASEVG 705

Query: 501 PDDRLCGCLLSVVS 514
           PD     C++ + S
Sbjct: 706 PDVYSSNCMIDLYS 719



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/243 (22%), Positives = 101/243 (41%), Gaps = 25/243 (10%)

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
           N++ YN +L  +GKA K     SL+DEM+  G+TP   T   LI +Y K    ++AL   
Sbjct: 195 NVIHYNIMLRILGKARKWHHVESLWDEMMSRGITPVNSTYGTLIDVYSKGGLTEEALHWL 254

Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPD------------- 432
           +RM +     D +    ++      G  ++AE+ F++  L    K +             
Sbjct: 255 DRMNKQGMEPDEVTMGVVVQTYKKAGEFKKAEQFFKNWSLGKTLKDEGKTSEPTATSAVE 314

Query: 433 ----------NYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKAR 482
                     +Y+Y  +++ YG  G +  A + F  M   G+  N +    +I   G   
Sbjct: 315 SASQPHVCLSSYTYNTLIDTYGKAGQLREASDTFAWMLREGIIPNTVTFNTMIHICGNHG 374

Query: 483 RIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQA--NPKLVAFL 540
           ++++   +     +    PD R    L+S+ +     +        +++A   P LV++ 
Sbjct: 375 QLEEAASLMQKMEELRCPPDTRTYNILISLHAKHNNIDRAASYFKKMKEARLEPDLVSYR 434

Query: 541 NLI 543
            L+
Sbjct: 435 TLL 437



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 60/277 (21%), Positives = 111/277 (40%), Gaps = 35/277 (12%)

Query: 148 IPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIE 207
           +P + +  + + IL S     K+ F+   ++   L   + I Y   + S     Q ++ E
Sbjct: 565 LPDKFSYNSLIQILASADLPHKAKFYLMKMQETQLVS-DCIPYCAVISSFIKLGQLEMAE 623

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
            L  EM+   ++ D + Y  +I          EA+ +   +   GL  + V Y++++ +Y
Sbjct: 624 GLFKEMIGYNVQPDVVVYGILINAFADVGNVREAVNYVNALRNAGLPMNAVIYNSLIKLY 683

Query: 268 AKSGKVEEVLSLYERGVASGWKPD----------------------------------PI 293
            K G +EE    Y+   AS   PD                                    
Sbjct: 684 TKVGYLEEAQEAYKMLQASEVGPDVYSSNCMIDLYSERSMVKQAEEIFESLKRKGDANEF 743

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
           +F+++  M+   G       ++Q+M+ LG+  +L+ YN +L      G+   A   F EM
Sbjct: 744 SFAMMLCMYKRIGKLKEAFQIVQKMRELGLVTDLLSYNNVLGFYAMDGRFKDAVGTFKEM 803

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
           +E+ + PD+ T  +L  +  K    K A+   E  R+
Sbjct: 804 IEAAIQPDDCTFKSLGVVLVKCGIPKQAVGKLEMTRK 840


>gi|357494043|ref|XP_003617310.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518645|gb|AET00269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 716

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/313 (28%), Positives = 157/313 (50%), Gaps = 1/313 (0%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN  +  L     ++  +++ +EM+   +  +  T++ ++  + R     EA   F  M 
Sbjct: 297 YNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFNPMLVESCRKEDVWEAERVFNEML 356

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
           + G++PD +++S+I+ V++++G++   L+ +E+    G  PD + +++L   +  + D  
Sbjct: 357 QRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGYCRNDDVS 416

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
           G   +  EM   G   ++V YNTLL  + +      A  LF EMVE G+ PD  TLT LI
Sbjct: 417 GALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTLTTLI 476

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
             Y K      AL L+E M       D + YNTL++    +G +E+A+ L+ DM +S   
Sbjct: 477 HGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELWYDM-ISREI 535

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
            P   S++ ++N + S G V  A  L++EM E G+   ++ C  +I+   +A  +     
Sbjct: 536 FPSYISFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKAND 595

Query: 490 VFGVSIDRGVKPD 502
                I  GV PD
Sbjct: 596 FLNTMISEGVPPD 608



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 148/333 (44%), Gaps = 2/333 (0%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           +F  +K   L P +T+ Y + +             ++ NEMV     +D +TY+T++   
Sbjct: 386 YFEKMKGVGLVP-DTVIYTILINGYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNGL 444

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            R  + D+A E F+ M + G+ PD  T + ++  Y K G + + LSL+E       KPD 
Sbjct: 445 CRGKMLDDADELFKEMVERGVFPDFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDV 504

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           + ++ L   F + G+ +  + +  +M S  + P+ + ++ L+      G    A  L+DE
Sbjct: 505 VTYNTLMDGFCKVGEMEKAKELWYDMISREIFPSYISFSILINGFCSLGLVSEAFRLWDE 564

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M E G+ P   T   +IK Y +A     A +    M     P D I YNTL+N       
Sbjct: 565 MKEKGIKPTLVTCNTIIKGYLRAGNLSKANDFLNTMISEGVPPDCITYNTLINSFVKEEN 624

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
            + A  L  +M+      P+  +Y A+L  +   G +  A  +  +M + G+  +    T
Sbjct: 625 FDRAFFLINNMEERGLL-PNLVTYNAILGGFSRHGRMQEAEMVLHKMIDKGINPDKSTYT 683

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRL 505
            LI        + +  RV    + RG  PDD+ 
Sbjct: 684 SLINGYVSKDNMKEAFRVHDEMLQRGFVPDDKF 716



 Score = 89.0 bits (219), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 126/298 (42%), Gaps = 36/298 (12%)

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           E  E F+ + K G        +A+L    K G V+    +YE  V SG   +    +++ 
Sbjct: 172 EGSEAFQLLRKRGFCVSINACNALLGAIVKVGWVDLAWKVYEDFVKSGNIVNVYTLNIMV 231

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM-----------------GKAGK 342
               + G  D +   L EM+  GV  +LV YNTL+ A                  GK  K
Sbjct: 232 NALCKDGKLDNVGVYLSEMEEKGVYADLVTYNTLVNAYCRRGLVSEAFGLVDCMAGKGLK 291

Query: 343 PGL------------------ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384
           PGL                  A+ + DEM+  GL P+  T   ++    +     +A  +
Sbjct: 292 PGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFNPMLVESCRKEDVWEAERV 351

Query: 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYG 444
           +  M +     D I +++++ + +  G +  A   FE MK      PD   YT ++N Y 
Sbjct: 352 FNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLV-PDTVIYTILINGYC 410

Query: 445 SGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
              +V  A+++  EM E G  ++V+    L+  L + + +DD   +F   ++RGV PD
Sbjct: 411 RNDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPD 468


>gi|168061839|ref|XP_001782893.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162665615|gb|EDQ52293.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 713

 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 124/521 (23%), Positives = 226/521 (43%), Gaps = 71/521 (13%)

Query: 181 NLFPMETIFYNV--TMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLF 238
           +++    +FY V   +KSLR   +    E L N    + +  D +TY+T++    +    
Sbjct: 208 SVYGKAGLFYEVELVVKSLR--AEIARREDLGN----SSLAFDLVTYNTLLDVYGKAGRL 261

Query: 239 DEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVE-EVLSLYERGVASGWKPDPIAFSV 297
           D+ I WF  M K+G+ PD +T+ ++++ Y K+   + EVL L+ +     +K D + ++ 
Sbjct: 262 DDVIYWFGEMKKSGVQPDVLTFDSLVNAYGKASHYDGEVLELFRK---YNYKSDLVFYNT 318

Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
           L  MFG+ G Y     +L++MK+ G  P    YN+L+ A G+  +   A +  + M  +G
Sbjct: 319 LLFMFGKGGHYADAWKILEDMKAAGFMPTSETYNSLILAFGRGSQWQEAENTLERMKANG 378

Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417
           + P  ++ + L++ Y  +                                   G + + E
Sbjct: 379 VKPVAQSFSFLLEAYSLS-----------------------------------GQIPKGE 403

Query: 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
           +L   MK  +        + ++L  Y   G++ + I+ +E     G   N      +I+ 
Sbjct: 404 KLIVKMKEENLIYGIA-GHNSLLRFYMRAGDIGSIIQTYETCQTRGPKPNQSSFVPMIEA 462

Query: 478 LGKARRIDDLVRVFGVSIDRGVKPDD---RLCGCLLSVVSLCETSEDVGKVITCLQQ--A 532
           L K   +D+  R +G++ D    P D    + G LLS +  C  S D  +++  L++   
Sbjct: 463 LTKENTVDE--RFWGIAQDLENAPFDVHFAIHGALLSALGRCGQSPDADRLLGILKRLGC 520

Query: 533 NPKLVAFLNLIEDNSTGFENIKEE---------FRNVIKD-TEVDARRPFCNCLIDICRN 582
           +P +    NL E+       +  E         F ++ ++   ++A R F N LID    
Sbjct: 521 SPDIC---NLFEEGEAAQSKLSGEEAWKRLATLFNSLEQEGVNMEAERNFHNALIDALWR 577

Query: 583 RNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAKIVLR 642
            +   RA ++  L    G++     +  D WSLDVR    GAAQ  L  W+  + + +  
Sbjct: 578 FDYKLRALKVTELSVSLGVFGSNVCQWKDCWSLDVRFAGTGAAQILLLTWLSGIRQAIKS 637

Query: 643 EEVLP---QLFLAETGTGTHKFSQGLATAFASHVNKLAAPF 680
            E +P   ++ LA         + G     ++H+N L APF
Sbjct: 638 GEKMPSKVKILLAWEWQLRTGENWGARDGVSAHLNALKAPF 678



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 76/283 (26%), Positives = 133/283 (46%), Gaps = 19/283 (6%)

Query: 221 DNITYSTIITC---AKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL 277
           D + Y TII     A+R N+  EA+  FE   K+G+ P    Y  ++  Y K G ++  +
Sbjct: 22  DELVYRTIINVLINARRMNV-AEAV--FEEFVKSGMSPSHDDYVILMSGYTKCGSLQRGI 78

Query: 278 SLYERGVASGWKPDPIAFSVL--GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLE 335
            + ++   +G  P   A++V+  G      GD +G+    + +  +G+Q + V +N ++ 
Sbjct: 79  GILQKMREAGIHPQVSAYNVILEGCTRSTRGDINGMMEAHRILMDMGLQQDSVTFNIIMN 138

Query: 336 AMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR-WAKDALELWERMRENKWP 394
           A+ + G+       +  M    + PD  T + LI  +G+AR W K  L L E M      
Sbjct: 139 ALNRVGRIRDVDRYWALMRMGRIVPDLTTCSILINAFGRARDWHKVDLVLAE-METYGIK 197

Query: 395 MDFILYNTLLNMCADIGLVEEAERLFEDMKL---------SDYCKPDNYSYTAMLNIYGS 445
            D ++YN+L+++    GL  E E + + ++          +     D  +Y  +L++YG 
Sbjct: 198 ADLMIYNSLISVYGKAGLFYEVELVVKSLRAEIARREDLGNSSLAFDLVTYNTLLDVYGK 257

Query: 446 GGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLV 488
            G +D+ I  F EM + GV  +V+    L+   GKA   D  V
Sbjct: 258 AGRLDDVIYWFGEMKKSGVQPDVLTFDSLVNAYGKASHYDGEV 300


>gi|225447872|ref|XP_002269015.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Vitis vinifera]
          Length = 656

 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 92/374 (24%), Positives = 171/374 (45%), Gaps = 43/374 (11%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           +K+  F  +++     P   + YN  +         +   ++ + M    IE D+ TY +
Sbjct: 266 KKAREFIGFMEGLGFKP-NVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGS 324

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           +I+   +    +EA   F++M + GL+P+ VTY+ ++D Y   G +E   S  +  V  G
Sbjct: 325 LISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKG 384

Query: 288 WKPDPIAFSVLGK---MFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344
             P    +++L     M G  G+ D +   ++EM+  G+ P+ + YN L+    + G   
Sbjct: 385 IMPSVSTYNLLVHALFMEGRMGEADDM---IKEMRKKGIIPDAITYNILINGYSRCGNAK 441

Query: 345 LARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
            A  L +EM+  G+ P   T T+LI +  +    K+A +L+E++ +     D I++N ++
Sbjct: 442 KAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMV 501

Query: 405 N-MCADI----------------------------------GLVEEAERLFEDMKLSDYC 429
           +  CA+                                   G VEEA  L ++MK     
Sbjct: 502 DGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGI- 560

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
           KPD+ SY  +++ YG  G++ +A  + +EM  +G    ++    LI+CL K +  D    
Sbjct: 561 KPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEE 620

Query: 490 VFGVSIDRGVKPDD 503
           +    +++G+ PDD
Sbjct: 621 LLKEMVNKGISPDD 634



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 127/265 (47%), Gaps = 4/265 (1%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN+ + +L    +    + +  EM    I  D ITY+ +I    RC    +A +    M 
Sbjct: 392 YNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEML 451

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
             G+ P  VTY++++ V ++  +++E   L+E+ +  G  PD I F+ +      +G+ +
Sbjct: 452 SKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVE 511

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               +L+EM    V P+ V +NTL++   + GK   AR L DEM   G+ PD  +   LI
Sbjct: 512 RAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLI 571

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
             YG+    KDA  + + M    +    + YN L+         + AE L ++M ++   
Sbjct: 572 SGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEM-VNKGI 630

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIE 454
            PD+ +Y +++      GNVD  +E
Sbjct: 631 SPDDSTYLSLIE---GMGNVDTLVE 652



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 126/269 (46%), Gaps = 1/269 (0%)

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
           + N  + A   +  M++  +     T++ +++V  K GK+++           G+KP+ +
Sbjct: 226 KLNRMEMAWVLYAEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVV 285

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
           +++ +   +   G+ +G R +L  M+  G++P+   Y +L+  M K G+   A  LFD+M
Sbjct: 286 SYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKM 345

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
           VE GL P+  T   LI  Y      + A    + M +         YN L++     G +
Sbjct: 346 VEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRM 405

Query: 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTC 473
            EA+ + ++M+      PD  +Y  ++N Y   GN   A +L  EM   G+    +  T 
Sbjct: 406 GEADDMIKEMRKKGII-PDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTS 464

Query: 474 LIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           LI  L +  R+ +   +F   +D+GV PD
Sbjct: 465 LIYVLSRRNRMKEADDLFEKILDQGVSPD 493



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 119/261 (45%), Gaps = 1/261 (0%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  EM    I     T++ ++    +     +A E+   M   G  P+ V+Y+ I+  Y+
Sbjct: 236 LYAEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYS 295

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
             G +E    + +     G +PD   +  L     + G  +    +  +M  +G+ PN V
Sbjct: 296 SRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAV 355

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            YNTL++     G    A S  DEMV+ G+ P   T   L+          +A ++ + M
Sbjct: 356 TYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEM 415

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
           R+     D I YN L+N  +  G  ++A  L  +M LS   +P + +YT+++ +      
Sbjct: 416 RKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEM-LSKGIEPTHVTYTSLIYVLSRRNR 474

Query: 449 VDNAIELFEEMSELGVAINVM 469
           +  A +LFE++ + GV+ +V+
Sbjct: 475 MKEADDLFEKILDQGVSPDVI 495



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 65/281 (23%), Positives = 116/281 (41%), Gaps = 42/281 (14%)

Query: 239 DEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
           DEA + F  M + G++P   T + +L ++ K  ++E    LY              F+++
Sbjct: 196 DEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMFRLRISSTVYTFNIM 255

Query: 299 GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
             +  + G     R  +  M+ LG +PN+V YNT++      G    AR + D M   G+
Sbjct: 256 VNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGI 315

Query: 359 TPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAER 418
            PD  T  +LI    K    ++A  L+++M E                   IGLV     
Sbjct: 316 EPDSYTYGSLISGMCKEGRLEEASGLFDKMVE-------------------IGLV----- 351

Query: 419 LFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL 478
                       P+  +Y  +++ Y + G+++ A    +EM + G+  +V     L+  L
Sbjct: 352 ------------PNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHAL 399

Query: 479 ---GKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLC 516
              G+    DD+++       +G+ PD      L++  S C
Sbjct: 400 FMEGRMGEADDMIKEMR---KKGIIPDAITYNILINGYSRC 437



 Score = 40.8 bits (94), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 80/180 (44%), Gaps = 28/180 (15%)

Query: 347 RSLFDEMVESGLTPDEKTLTA------LIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           R LFDE+    L+ D  ++ +      L+++  + R A +A + +  M+E          
Sbjct: 161 RELFDELT---LSRDRLSVKSSIVFDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETC 217

Query: 401 NTLLNMCADIGLVEEAERLFEDM---KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE 457
           N +L++   +  +E A  L+ +M   ++S       Y++  M+N+    G +  A E   
Sbjct: 218 NDMLSLFLKLNRMEMAWVLYAEMFRLRISSTV----YTFNIMVNVLCKEGKLKKAREFIG 273

Query: 458 EMSELGVAINVMGCTCLIQC------LGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
            M  LG   NV+    +I        +  ARRI D +RV      +G++PD    G L+S
Sbjct: 274 FMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRV------KGIEPDSYTYGSLIS 327


>gi|428671933|gb|EKX72848.1| pentatricopeptide repeat domain containing protein [Babesia equi]
          Length = 1104

 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/284 (29%), Positives = 137/284 (48%), Gaps = 4/284 (1%)

Query: 224  TYSTIITCAKRCNLFDEAIE-WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
            TY  II     C + DE    W E + K G  P+EVTY  + D Y  + +V++ + L+E 
Sbjct: 734  TYGVIIKSLSCCGMIDECNRLWDEFVNKRGFEPNEVTYGCMFDAYVNNNRVDDAVRLFED 793

Query: 283  GVASG-WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG 341
              + G  KP+ I ++ L K +G++   D    +   M S  V  N V YN++++A  + G
Sbjct: 794  MKSQGKVKPNTIMYTTLIKGYGQNKQLDKALKMFNMMCSENVAANTVTYNSIIDACARVG 853

Query: 342  KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYN 401
                A SL ++M+ + + PD  T + +IK Y        + +L   M E     D ILYN
Sbjct: 854  DMNGAASLLEDMLNNNIEPDLITFSTIIKGYCVQSNMDKSFQLLSIMYERGIMPDVILYN 913

Query: 402  TLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM-S 460
            +LL  C   GL+   E+L++ M+      P N++ T ++ +YG  G +D   EL + +  
Sbjct: 914  SLLEGCVKSGLLWLCEKLWQQMQQYGI-PPSNFTLTILIKMYGRNGQLDKVFELADTLPK 972

Query: 461  ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR 504
            + G  IN    TCL+       R   ++ V+      G+K D +
Sbjct: 973  QYGFTINTHVYTCLMSACITNGRYSMILEVYKCMKSAGIKADAK 1016



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 122/247 (49%), Gaps = 2/247 (0%)

Query: 217  EIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV 276
            +++ + I Y+T+I    +    D+A++ F  M    +  + VTY++I+D  A+ G +   
Sbjct: 799  KVKPNTIMYTTLIKGYGQNKQLDKALKMFNMMCSENVAANTVTYNSIIDACARVGDMNGA 858

Query: 277  LSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA 336
             SL E  + +  +PD I FS + K +    + D    +L  M   G+ P++++YN+LLE 
Sbjct: 859  ASLLEDMLNNNIEPDLITFSTIIKGYCVQSNMDKSFQLLSIMYERGIMPDVILYNSLLEG 918

Query: 337  MGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM-RENKWPM 395
              K+G   L   L+ +M + G+ P   TLT LIK+YG+        EL + + ++  + +
Sbjct: 919  CVKSGLLWLCEKLWQQMQQYGIPPSNFTLTILIKMYGRNGQLDKVFELADTLPKQYGFTI 978

Query: 396  DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIEL 455
            +  +Y  L++ C   G       +++ MK S   K D  ++  ++     GG    A ++
Sbjct: 979  NTHVYTCLMSACITNGRYSMILEVYKCMK-SAGIKADAKTFETLIQGASKGGLYLEAADI 1037

Query: 456  FEEMSEL 462
              ++  L
Sbjct: 1038 ISDVYSL 1044



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 65/147 (44%), Gaps = 1/147 (0%)

Query: 357 GLTPDEKTLTALIKIYGKARWAKDALELW-ERMRENKWPMDFILYNTLLNMCADIGLVEE 415
           GL P  +T   +IK         +   LW E + +  +  + + Y  + +   +   V++
Sbjct: 727 GLQPQAQTYGVIIKSLSCCGMIDECNRLWDEFVNKRGFEPNEVTYGCMFDAYVNNNRVDD 786

Query: 416 AERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLI 475
           A RLFEDMK     KP+   YT ++  YG    +D A+++F  M    VA N +    +I
Sbjct: 787 AVRLFEDMKSQGKVKPNTIMYTTLIKGYGQNKQLDKALKMFNMMCSENVAANTVTYNSII 846

Query: 476 QCLGKARRIDDLVRVFGVSIDRGVKPD 502
               +   ++    +    ++  ++PD
Sbjct: 847 DACARVGDMNGAASLLEDMLNNNIEPD 873


>gi|225453062|ref|XP_002266822.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Vitis vinifera]
          Length = 582

 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/364 (25%), Positives = 165/364 (45%), Gaps = 35/364 (9%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
            N +K++   P + + YN+ + SL   R+  L  ++ ++++ +      ITY+ +I    
Sbjct: 160 LNRMKARGFLP-DIVTYNIMIGSLCNRRKLGLALKVLDQLLLDNCMPTVITYTILIEATI 218

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
                +EA++  E M   GL+PD  TY+AI+    K G VE    L     + G KPD I
Sbjct: 219 VEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCKPDVI 278

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
           ++++L + F   G +D    ++ EM S G +PN V Y+ L+ ++ + G+   A S+   M
Sbjct: 279 SYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVM 338

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
           +E  LTPD  +   LI    K      A+ + + M  N    D + YNT+L      G  
Sbjct: 339 IEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNA 398

Query: 414 EEAERLFEDMK----------------------------------LSDYCKPDNYSYTAM 439
            +A  +F  ++                                  +S    PD  +Y ++
Sbjct: 399 NQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGVDPDEITYNSL 458

Query: 440 LNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGV 499
           ++     G V+ AI L ++M + G    V+    ++  L K RRIDD + +F   I++G 
Sbjct: 459 ISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGC 518

Query: 500 KPDD 503
           +P++
Sbjct: 519 RPNE 522



 Score =  109 bits (272), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 64/270 (23%), Positives = 133/270 (49%), Gaps = 1/270 (0%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + I YN+ +++     ++   E+L  EM S   E + +TYS +I+   R    DEAI   
Sbjct: 276 DVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVL 335

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           + M +  L PD  +Y  ++    K G+++  + + +  +++G  PD + ++ +     ++
Sbjct: 336 KVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKN 395

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G+ +    +  +++ +G  PN+  YNT++ A+   G    A  +   M+  G+ PDE T 
Sbjct: 396 GNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGVDPDEITY 455

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
            +LI    +    ++A+ L + M ++ +    I YN +L     +  +++A  +F +M +
Sbjct: 456 NSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEM-I 514

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIEL 455
              C+P+  +Y  ++   G  G    A+EL
Sbjct: 515 EKGCRPNETTYILLIEGIGFAGWRTEAMEL 544



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 115/281 (40%), Gaps = 37/281 (13%)

Query: 257 EVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI----------------------- 293
           E     +L+   K+GK  E L   E  V  G+ PD I                       
Sbjct: 68  ETHLMKLLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVME 127

Query: 294 -----------AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
                      A++ +   F +    +    VL  MK+ G  P++V YN ++ ++    K
Sbjct: 128 ILESHTEPDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRK 187

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
            GLA  + D+++     P   T T LI+         +A++L E M       D   YN 
Sbjct: 188 LGLALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNA 247

Query: 403 LL-NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461
           ++  MC + G+VE A  L   +  S  CKPD  SY  +L  + + G  D   +L  EM  
Sbjct: 248 IIRGMCKE-GMVERAAELITSLT-SKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFS 305

Query: 462 LGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            G   N +  + LI  L +  RID+ + V  V I++ + PD
Sbjct: 306 RGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPD 346


>gi|115474441|ref|NP_001060817.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|42408384|dbj|BAD09535.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113622786|dbj|BAF22731.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|125601950|gb|EAZ41275.1| hypothetical protein OsJ_25782 [Oryza sativa Japonica Group]
          Length = 798

 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 97/334 (29%), Positives = 157/334 (47%), Gaps = 4/334 (1%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           K+Y  F+ +  Q + P   I YN  +       + +    +  +M  + +E D +TY+T+
Sbjct: 224 KAYCLFDEMLDQGMSP-NCITYNCLLHGYCSSGKPKEAIGIFRKMCRDGVEPDVVTYNTL 282

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
           +    +     EA + F+ M K G  PD   Y  +L  YA  G + ++  L +  V +G 
Sbjct: 283 MVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLLHGYATEGYLVQMHQLLDVMVRNGT 342

Query: 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348
           +PD   F++L   + + G  D       +M+  G+ PN+V Y T+++A+ + GK   A S
Sbjct: 343 QPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVTYGTVMDALCRVGKVDDAMS 402

Query: 349 LFDEMVESGLTPDEKTLTALIK-IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
            FD ++  GLTP+      LI  +    +W K A EL   M       + I +NTLLN  
Sbjct: 403 QFDRLISEGLTPNGVVFRTLIHGLCACDKWDK-AEELAVEMIGRGICPNTIFFNTLLNHL 461

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
              G+V  A+ +F+ M   D  + D  +YT +++ Y   G VD A +L E M   GV  N
Sbjct: 462 CKEGMVTRAKNIFDLMVRVDV-QCDVITYTTLIDGYCLDGKVDEATKLLEGMVLDGVKPN 520

Query: 468 VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
            +    +I    K  RI+D   +F     +GV P
Sbjct: 521 EVTYNTIINGYCKNGRIEDACSLFRQMASKGVNP 554



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 80/286 (27%), Positives = 138/286 (48%), Gaps = 1/286 (0%)

Query: 206 IEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
           + QL + MV N  + D+  ++ +I    +  + DEA+  F +M + GL P+ VTY  ++D
Sbjct: 330 MHQLLDVMVRNGTQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVTYGTVMD 389

Query: 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325
              + GKV++ +S ++R ++ G  P+ + F  L         +D    +  EM   G+ P
Sbjct: 390 ALCRVGKVDDAMSQFDRLISEGLTPNGVVFRTLIHGLCACDKWDKAEELAVEMIGRGICP 449

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
           N + +NTLL  + K G    A+++FD MV   +  D  T T LI  Y       +A +L 
Sbjct: 450 NTIFFNTLLNHLCKEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGYCLDGKVDEATKLL 509

Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445
           E M  +    + + YNT++N     G +E+A  LF  M  S    P    Y+ +L+    
Sbjct: 510 EGMVLDGVKPNEVTYNTIINGYCKNGRIEDACSLFRQMA-SKGVNPGIVIYSTILHGLFQ 568

Query: 446 GGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
              +  A EL+  M + G+ + +     ++Q L +    DD +R+F
Sbjct: 569 TRRIAAAKELYLWMIKCGIKLPIGTYNIILQGLCQNNCTDDALRMF 614



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 139/317 (43%), Gaps = 5/317 (1%)

Query: 190 YNVTMKSL----RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           YN+ +K L    R  +   L+  +  +        D ++Y+T+I    R    D+A   F
Sbjct: 170 YNILLKGLCDENRSQQALHLLHTMMADDTRGGCPPDVVSYTTVINGLLREGQLDKAYCLF 229

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           + M   G+ P+ +TY+ +L  Y  SGK +E + ++ +    G +PD + ++ L     ++
Sbjct: 230 DEMLDQGMSPNCITYNCLLHGYCSSGKPKEAIGIFRKMCRDGVEPDVVTYNTLMVYLCKN 289

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G     R V   M   G +P+  +Y TLL      G       L D MV +G  PD    
Sbjct: 290 GRSMEARKVFDSMVKKGHKPDSSIYGTLLHGYATEGYLVQMHQLLDVMVRNGTQPDHYIF 349

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
             LI  Y K     +A+  + +MR+     + + Y T+++    +G V++A   F+ + +
Sbjct: 350 NILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVTYGTVMDALCRVGKVDDAMSQFDRL-I 408

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
           S+   P+   +  +++   +    D A EL  EM   G+  N +    L+  L K   + 
Sbjct: 409 SEGLTPNGVVFRTLIHGLCACDKWDKAEELAVEMIGRGICPNTIFFNTLLNHLCKEGMVT 468

Query: 486 DLVRVFGVSIDRGVKPD 502
               +F + +   V+ D
Sbjct: 469 RAKNIFDLMVRVDVQCD 485



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/336 (22%), Positives = 145/336 (43%), Gaps = 39/336 (11%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D  TYS +I C  R    D A     R+ +TG     +T+S +L       +  + + + 
Sbjct: 95  DLCTYSIVIGCCSRAGHLDLAFAALGRVIRTGWTAQAITFSPLLKGLCHDKRTSDAMDIA 154

Query: 281 ERGV-ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS----LGVQPNLVVYNTLLE 335
            R + A G  P+  ++++L K   +        ++L  M +     G  P++V Y T++ 
Sbjct: 155 LRRMPALGCTPNAFSYNILLKGLCDENRSQQALHLLHTMMADDTRGGCPPDVVSYTTVIN 214

Query: 336 AMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPM 395
            + + G+   A  LFDEM++ G++P+  T   L+  Y  +   K+A+ ++ +M  +    
Sbjct: 215 GLLREGQLDKAYCLFDEMLDQGMSPNCITYNCLLHGYCSSGKPKEAIGIFRKMCRDGVEP 274

Query: 396 DFILYNTLLNMCADIGLVEEAERLFE---------------------------------- 421
           D + YNTL+      G   EA ++F+                                  
Sbjct: 275 DVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLLHGYATEGYLVQMHQLL 334

Query: 422 DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
           D+ + +  +PD+Y +  ++  Y   G VD A+  F +M + G+  N++    ++  L + 
Sbjct: 335 DVMVRNGTQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVTYGTVMDALCRV 394

Query: 482 RRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCE 517
            ++DD +  F   I  G+ P+  +   L+  +  C+
Sbjct: 395 GKVDDAMSQFDRLISEGLTPNGVVFRTLIHGLCACD 430



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 130/271 (47%), Gaps = 10/271 (3%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           F+ + S+ L P   +F  + +  L    ++   E+LA EM+   I  + I ++T++    
Sbjct: 404 FDRLISEGLTPNGVVFRTL-IHGLCACDKWDKAEELAVEMIGRGICPNTIFFNTLLNHLC 462

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
           +  +   A   F+ M +  +  D +TY+ ++D Y   GKV+E   L E  V  G KP+ +
Sbjct: 463 KEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGYCLDGKVDEATKLLEGMVLDGVKPNEV 522

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
            ++ +   + ++G  +    + ++M S GV P +V+Y+T+L  + +  +   A+ L+  M
Sbjct: 523 TYNTIINGYCKNGRIEDACSLFRQMASKGVNPGIVIYSTILHGLFQTRRIAAAKELYLWM 582

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI--- 410
           ++ G+     T   +++   +     DAL    RM  N   +DF L N   N+  D    
Sbjct: 583 IKCGIKLPIGTYNIILQGLCQNNCTDDAL----RMFHNLCLIDFHLQNRTFNIMIDALLK 638

Query: 411 -GLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
            G  +EA+ LF  + L+    P+  +Y  M+
Sbjct: 639 GGRHDEAKDLFASL-LARGLVPNVVTYWLMM 668



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 113/271 (41%), Gaps = 37/271 (13%)

Query: 241 AIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS-VLG 299
           A+  F RM +     D  TYS ++   +++G ++   +   R + +GW    I FS +L 
Sbjct: 84  ALSLFNRMPRA----DLCTYSIVIGCCSRAGHLDLAFAALGRVIRTGWTAQAITFSPLLK 139

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
            +  +    D +   L+ M +LG  PN   YN LL+ +    +   A  L   M+     
Sbjct: 140 GLCHDKRTSDAMDIALRRMPALGCTPNAFSYNILLKGLCDENRSQQALHLLHTMM----- 194

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
                             A D             P D + Y T++N     G +++A  L
Sbjct: 195 ------------------ADDT--------RGGCPPDVVSYTTVINGLLREGQLDKAYCL 228

Query: 420 FEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479
           F++M L     P+  +Y  +L+ Y S G    AI +F +M   GV  +V+    L+  L 
Sbjct: 229 FDEM-LDQGMSPNCITYNCLLHGYCSSGKPKEAIGIFRKMCRDGVEPDVVTYNTLMVYLC 287

Query: 480 KARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
           K  R  +  +VF   + +G KPD  + G LL
Sbjct: 288 KNGRSMEARKVFDSMVKKGHKPDSSIYGTLL 318



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 65/281 (23%), Positives = 121/281 (43%), Gaps = 44/281 (15%)

Query: 130 KLNDCDNTEEAFLRAITE--IPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMET 187
           ++   D+    F R I+E   P+       +  L +   W K+      +  + + P  T
Sbjct: 393 RVGKVDDAMSQFDRLISEGLTPNGVVFRTLIHGLCACDKWDKAEELAVEMIGRGICP-NT 451

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           IF+N  +  L         + + + MV  +++ D ITY+T+I         DEA +  E 
Sbjct: 452 IFFNTLLNHLCKEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGYCLDGKVDEATKLLEG 511

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS-VLGKMFGES- 305
           M   G+ P+EVTY+ I++ Y K+G++E+  SL+ +  + G  P  + +S +L  +F    
Sbjct: 512 MVLDGVKPNEVTYNTIINGYCKNGRIEDACSLFRQMASKGVNPGIVIYSTILHGLFQTRR 571

Query: 306 --------------------GDYDGIRYVLQEM-------KSLGVQPNLVV--------- 329
                               G Y+    +LQ +        +L +  NL +         
Sbjct: 572 IAAAKELYLWMIKCGIKLPIGTYN---IILQGLCQNNCTDDALRMFHNLCLIDFHLQNRT 628

Query: 330 YNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK 370
           +N +++A+ K G+   A+ LF  ++  GL P+  T   ++K
Sbjct: 629 FNIMIDALLKGGRHDEAKDLFASLLARGLVPNVVTYWLMMK 669



 Score = 43.9 bits (102), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 39/217 (17%), Positives = 93/217 (42%), Gaps = 1/217 (0%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F  + S+ + P   + Y+  +  L   R+    ++L   M+   I+L   TY+ I+   
Sbjct: 543 LFRQMASKGVNP-GIVIYSTILHGLFQTRRIAAAKELYLWMIKCGIKLPIGTYNIILQGL 601

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            + N  D+A+  F  +          T++ ++D   K G+ +E   L+   +A G  P+ 
Sbjct: 602 CQNNCTDDALRMFHNLCLIDFHLQNRTFNIMIDALLKGGRHDEAKDLFASLLARGLVPNV 661

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           + + ++ K   E G  + +  +   ++  G   +  + N L+  + + G+   A     +
Sbjct: 662 VTYWLMMKSLIEQGLLEELDDLFLSLEKNGCTADSRMLNALVGKLPQKGEVRKAGVYLSK 721

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMR 389
           + E+  + +  T  +L+ +    ++ +    + E+ R
Sbjct: 722 IDENNFSLEASTAESLVFLVSSGKYDQHINSIPEKYR 758


>gi|357140426|ref|XP_003571769.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
           mitochondrial-like [Brachypodium distachyon]
          Length = 637

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 99/366 (27%), Positives = 168/366 (45%), Gaps = 34/366 (9%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           ++Y  F  +K +   P    +  +   S + G+ ++ +    +EMVS    L+ I Y+T+
Sbjct: 239 QAYQVFEDMKQKYCVPDAYTYTILIRMSGKTGQTYKFL-SFFDEMVSRGCALNLIAYNTV 297

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVE---EVL-------- 277
           I    +  + D+ I    +M ++   P++ TYS  LD+ A  G++    EVL        
Sbjct: 298 IEALGKNKMVDKVIFVLSKMIESDCQPNQFTYSLTLDILATEGQLHRLNEVLDICDRYLN 357

Query: 278 -SLYERGVASGWKPDPI--AFSVLGKMFG--ESGDYDGIRYVLQ---------------- 316
            S+Y   V S  K      A +V  +M+   ESGD D    +L+                
Sbjct: 358 KSIYSYLVKSLCKSGHASEAHNVFCRMWNSHESGDRDAFISMLEVLCNSGKTLEAIDLLH 417

Query: 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
            M   G+  ++ +YN +  A+GK  +     +LFD+M  SG+ PD  T   +I  YG+  
Sbjct: 418 MMPEKGIDTDIGMYNMVFSALGKLKQVSFISTLFDKMKASGIAPDLFTYNIMISSYGRVG 477

Query: 377 WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY 436
               A  L+E M  +    D I YNTL+N     G ++EA  LF++M+   Y  PD ++Y
Sbjct: 478 LVDKASGLFEEMEASSCKPDVITYNTLINCLGKNGDLDEAHILFKEMQEKGY-DPDVFTY 536

Query: 437 TAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496
           + ++  +G    VD A  LF+EM   G   N++    L+ CL +  +  +  + +     
Sbjct: 537 STLIECFGKSNKVDMACSLFDEMIAEGCIPNIVTYNILLDCLERRGKTAEAHKHYETMKQ 596

Query: 497 RGVKPD 502
           +G+ PD
Sbjct: 597 QGLTPD 602



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 98/188 (52%)

Query: 189 FYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERM 248
            YN+   +L   +Q   I  L ++M ++ I  D  TY+ +I+   R  L D+A   FE M
Sbjct: 430 MYNMVFSALGKLKQVSFISTLFDKMKASGIAPDLFTYNIMISSYGRVGLVDKASGLFEEM 489

Query: 249 YKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY 308
             +   PD +TY+ +++   K+G ++E   L++     G+ PD   +S L + FG+S   
Sbjct: 490 EASSCKPDVITYNTLINCLGKNGDLDEAHILFKEMQEKGYDPDVFTYSTLIECFGKSNKV 549

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
           D    +  EM + G  PN+V YN LL+ + + GK   A   ++ M + GLTPD  T + L
Sbjct: 550 DMACSLFDEMIAEGCIPNIVTYNILLDCLERRGKTAEAHKHYETMKQQGLTPDSITYSIL 609

Query: 369 IKIYGKAR 376
            ++  +++
Sbjct: 610 ERLESRSQ 617



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 102/204 (50%), Gaps = 1/204 (0%)

Query: 200 GRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVT 259
           G+  + I+ L + M    I+ D   Y+ + +   +          F++M  +G+ PD  T
Sbjct: 407 GKTLEAID-LLHMMPEKGIDTDIGMYNMVFSALGKLKQVSFISTLFDKMKASGIAPDLFT 465

Query: 260 YSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMK 319
           Y+ ++  Y + G V++   L+E   AS  KPD I ++ L    G++GD D    + +EM+
Sbjct: 466 YNIMISSYGRVGLVDKASGLFEEMEASSCKPDVITYNTLINCLGKNGDLDEAHILFKEMQ 525

Query: 320 SLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAK 379
             G  P++  Y+TL+E  GK+ K  +A SLFDEM+  G  P+  T   L+    +     
Sbjct: 526 EKGYDPDVFTYSTLIECFGKSNKVDMACSLFDEMIAEGCIPNIVTYNILLDCLERRGKTA 585

Query: 380 DALELWERMRENKWPMDFILYNTL 403
           +A + +E M++     D I Y+ L
Sbjct: 586 EAHKHYETMKQQGLTPDSITYSIL 609



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 92/352 (26%), Positives = 144/352 (40%), Gaps = 68/352 (19%)

Query: 218 IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL 277
           + L+  TY  I+    R     +  E +E M++ G   D   Y+ +LD  AK+G V++  
Sbjct: 182 LRLNGYTYKCIVQAHLRSREVSKGFEVYEEMHRKGYKLDIFAYNMLLDALAKAGMVDQAY 241

Query: 278 SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
            ++E        PD   +++L +M G++G          EM S G   NL+ YNT++EA+
Sbjct: 242 QVFEDMKQKYCVPDAYTYTILIRMSGKTGQTYKFLSFFDEMVSRGCALNLIAYNTVIEAL 301

Query: 338 GKAGKPGLARSLFDEMVESGLTPDEKTLTA------------------------------ 367
           GK         +  +M+ES   P++ T +                               
Sbjct: 302 GKNKMVDKVIFVLSKMIESDCQPNQFTYSLTLDILATEGQLHRLNEVLDICDRYLNKSIY 361

Query: 368 --LIKIYGKARWAKDALELWERM--------RENKWPMDFILYNT--------LLNMC-- 407
             L+K   K+  A +A  ++ RM        R+    M  +L N+        LL+M   
Sbjct: 362 SYLVKSLCKSGHASEAHNVFCRMWNSHESGDRDAFISMLEVLCNSGKTLEAIDLLHMMPE 421

Query: 408 ----ADIGL-------------VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
                DIG+             V     LF+ MK S    PD ++Y  M++ YG  G VD
Sbjct: 422 KGIDTDIGMYNMVFSALGKLKQVSFISTLFDKMKASG-IAPDLFTYNIMISSYGRVGLVD 480

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            A  LFEEM       +V+    LI CLGK   +D+   +F    ++G  PD
Sbjct: 481 KASGLFEEMEASSCKPDVITYNTLINCLGKNGDLDEAHILFKEMQEKGYDPD 532



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 99/200 (49%), Gaps = 1/200 (0%)

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           EAI+    M + G+  D   Y+ +     K  +V  + +L+++  ASG  PD   ++++ 
Sbjct: 411 EAIDLLHMMPEKGIDTDIGMYNMVFSALGKLKQVSFISTLFDKMKASGIAPDLFTYNIMI 470

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
             +G  G  D    + +EM++   +P+++ YNTL+  +GK G    A  LF EM E G  
Sbjct: 471 SSYGRVGLVDKASGLFEEMEASSCKPDVITYNTLINCLGKNGDLDEAHILFKEMQEKGYD 530

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
           PD  T + LI+ +GK+     A  L++ M       + + YN LL+     G   EA + 
Sbjct: 531 PDVFTYSTLIECFGKSNKVDMACSLFDEMIAEGCIPNIVTYNILLDCLERRGKTAEAHKH 590

Query: 420 FEDMKLSDYCKPDNYSYTAM 439
           +E MK      PD+ +Y+ +
Sbjct: 591 YETMKQQGL-TPDSITYSIL 609



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 112/218 (51%), Gaps = 7/218 (3%)

Query: 287 GWKPDPIAFS-VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGL 345
           G++ D  +++ +L  +F    D      ++ +M+  GV  N+   N L+   G   +  +
Sbjct: 113 GFRHDAFSYNRILALLFRSKADPGEALRLVAQMERDGVAGNISTVNLLVGMGGGGVE--V 170

Query: 346 ARSLFDEMVES-GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
           AR L  E+ +  GL  +  T   +++ + ++R      E++E M    + +D   YN LL
Sbjct: 171 ARCL--ELAKKWGLRLNGYTYKCIVQAHLRSREVSKGFEVYEEMHRKGYKLDIFAYNMLL 228

Query: 405 NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
           +  A  G+V++A ++FEDMK   YC PD Y+YT ++ + G  G     +  F+EM   G 
Sbjct: 229 DALAKAGMVDQAYQVFEDMK-QKYCVPDAYTYTILIRMSGKTGQTYKFLSFFDEMVSRGC 287

Query: 465 AINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           A+N++    +I+ LGK + +D ++ V    I+   +P+
Sbjct: 288 ALNLIAYNTVIEALGKNKMVDKVIFVLSKMIESDCQPN 325



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/337 (21%), Positives = 131/337 (38%), Gaps = 44/337 (13%)

Query: 200 GRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVT 259
           G   +L+ Q+  + V+  I   N+         +     + A +W       GL  +  T
Sbjct: 136 GEALRLVAQMERDGVAGNISTVNLLVGMGGGGVEVARCLELAKKW-------GLRLNGYT 188

Query: 260 YSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMK 319
           Y  I+  + +S +V +   +YE     G+K D  A+++L     ++G  D    V ++MK
Sbjct: 189 YKCIVQAHLRSREVSKGFEVYEEMHRKGYKLDIFAYNMLLDALAKAGMVDQAYQVFEDMK 248

Query: 320 SLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAK 379
                P+   Y  L+   GK G+     S FDEMV  G   +      +I+  GK +   
Sbjct: 249 QKYCVPDAYTYTILIRMSGKTGQTYKFLSFFDEMVSRGCALNLIAYNTVIEALGKNKMVD 308

Query: 380 DALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD------------ 427
             + +  +M E+    +   Y+  L++ A  G   +  RL E + + D            
Sbjct: 309 KVIFVLSKMIESDCQPNQFTYSLTLDILATEG---QLHRLNEVLDICDRYLNKSIYSYLV 365

Query: 428 ---------------YCK-------PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
                          +C+        D  ++ +ML +  + G    AI+L   M E G+ 
Sbjct: 366 KSLCKSGHASEAHNVFCRMWNSHESGDRDAFISMLEVLCNSGKTLEAIDLLHMMPEKGID 425

Query: 466 INVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            ++     +   LGK +++  +  +F      G+ PD
Sbjct: 426 TDIGMYNMVFSALGKLKQVSFISTLFDKMKASGIAPD 462



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 63/144 (43%), Gaps = 1/144 (0%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           K+   F  +++ +  P + I YN  +  L           L  EM     + D  TYST+
Sbjct: 481 KASGLFEEMEASSCKP-DVITYNTLINCLGKNGDLDEAHILFKEMQEKGYDPDVFTYSTL 539

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
           I C  + N  D A   F+ M   G +P+ VTY+ +LD   + GK  E    YE     G 
Sbjct: 540 IECFGKSNKVDMACSLFDEMIAEGCIPNIVTYNILLDCLERRGKTAEAHKHYETMKQQGL 599

Query: 289 KPDPIAFSVLGKMFGESGDYDGIR 312
            PD I +S+L ++   S     IR
Sbjct: 600 TPDSITYSILERLESRSQRTARIR 623


>gi|356530296|ref|XP_003533718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Glycine max]
          Length = 830

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 98/385 (25%), Positives = 177/385 (45%), Gaps = 12/385 (3%)

Query: 142 LRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSL-RFG 200
           +RA T I H   R            ++++   F+ ++   L P   + YNV +    + G
Sbjct: 216 VRAYTTILHAYARSGK---------YKRAIDLFDKMEGIGLDPT-LVTYNVMLDVYGKMG 265

Query: 201 RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTY 260
           R +  I +L +EM S  +E D  T ST+I+   R  + DEA ++   +   G  P  V Y
Sbjct: 266 RSWGRILELLDEMRSKGLEFDEFTCSTVISACGREGMLDEARKFLAELKLNGYKPGTVMY 325

Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
           +++L V+ K+G   E LS+ +    +   PD I ++ L   +  +G  D    V+  M S
Sbjct: 326 NSMLQVFGKAGIYTEALSILKEMEDNNCPPDSITYNELAATYVRAGFLDEGMAVIDTMTS 385

Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380
            GV PN + Y T+++A GKAG+   A  LF +M + G  P+  T  +++ + GK    +D
Sbjct: 386 KGVMPNAITYTTVIDAYGKAGREDDALRLFSKMKDLGCAPNVYTYNSVLAMLGKKSRTED 445

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
            +++   M+ N    +   +NT+L +C++ G      ++  +MK   + +PD  ++  ++
Sbjct: 446 VIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVLREMKNCGF-EPDKDTFNTLI 504

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
           + Y   G+  ++ +++ EM + G    V     L+  L           V      +G K
Sbjct: 505 SSYARCGSEVDSAKMYGEMVKSGFTPCVTTYNALLNALAHRGDWKAAESVIQDMQTKGFK 564

Query: 501 PDDRLCGCLLSVVSLCETSEDVGKV 525
           P++     LL   S       + KV
Sbjct: 565 PNETSYSLLLHCYSKAGNVRGIEKV 589



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 94/361 (26%), Positives = 166/361 (45%), Gaps = 23/361 (6%)

Query: 218 IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL 277
           + LDN     ++    R +    A + F+ +       D   Y+ IL  YA+SGK +  +
Sbjct: 177 LRLDNQVVELMVRILGRESQHSIASKLFDLIPVEKYSLDVRAYTTILHAYARSGKYKRAI 236

Query: 278 SLYERGVASGWKPDPIAFSVLGKMFGESG-DYDGIRYVLQEMKSLGVQPNLVVYNTLLEA 336
            L+++    G  P  + ++V+  ++G+ G  +  I  +L EM+S G++ +    +T++ A
Sbjct: 237 DLFDKMEGIGLDPTLVTYNVMLDVYGKMGRSWGRILELLDEMRSKGLEFDEFTCSTVISA 296

Query: 337 MGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMD 396
            G+ G    AR    E+  +G  P      ++++++GKA    +AL + + M +N  P D
Sbjct: 297 CGREGMLDEARKFLAELKLNGYKPGTVMYNSMLQVFGKAGIYTEALSILKEMEDNNCPPD 356

Query: 397 FILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELF 456
            I YN L       G ++E   + + M  S    P+  +YT +++ YG  G  D+A+ LF
Sbjct: 357 SITYNELAATYVRAGFLDEGMAVIDTMT-SKGVMPNAITYTTVIDAYGKAGREDDALRLF 415

Query: 457 EEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLC 516
            +M +LG A NV     ++  LGK  R +D+++V       G  P+      +L+V S  
Sbjct: 416 SKMKDLGCAPNVYTYNSVLAMLGKKSRTEDVIKVLCEMKLNGCAPNRATWNTMLAVCSEE 475

Query: 517 ETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKD-----TEVDARRP 571
                V KV                L E  + GFE  K+ F  +I       +EVD+ + 
Sbjct: 476 GKHNYVNKV----------------LREMKNCGFEPDKDTFNTLISSYARCGSEVDSAKM 519

Query: 572 F 572
           +
Sbjct: 520 Y 520



 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 93/364 (25%), Positives = 163/364 (44%), Gaps = 6/364 (1%)

Query: 167 WQKSYFFFNW----IKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDN 222
           W+++   F W      S     ++     + ++ L    Q  +  +L + +   +  LD 
Sbjct: 157 WERALLLFEWGWLHFGSDQNLRLDNQVVELMVRILGRESQHSIASKLFDLIPVEKYSLDV 216

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKV-EEVLSLYE 281
             Y+TI+    R   +  AI+ F++M   GL P  VTY+ +LDVY K G+    +L L +
Sbjct: 217 RAYTTILHAYARSGKYKRAIDLFDKMEGIGLDPTLVTYNVMLDVYGKMGRSWGRILELLD 276

Query: 282 RGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG 341
              + G + D    S +    G  G  D  R  L E+K  G +P  V+YN++L+  GKAG
Sbjct: 277 EMRSKGLEFDEFTCSTVISACGREGMLDEARKFLAELKLNGYKPGTVMYNSMLQVFGKAG 336

Query: 342 KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYN 401
               A S+  EM ++   PD  T   L   Y +A +  + + + + M       + I Y 
Sbjct: 337 IYTEALSILKEMEDNNCPPDSITYNELAATYVRAGFLDEGMAVIDTMTSKGVMPNAITYT 396

Query: 402 TLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461
           T+++     G  ++A RLF  MK    C P+ Y+Y ++L + G     ++ I++  EM  
Sbjct: 397 TVIDAYGKAGREDDALRLFSKMK-DLGCAPNVYTYNSVLAMLGKKSRTEDVIKVLCEMKL 455

Query: 462 LGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSED 521
            G A N      ++    +  + + + +V     + G +PD      L+S  + C +  D
Sbjct: 456 NGCAPNRATWNTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKDTFNTLISSYARCGSEVD 515

Query: 522 VGKV 525
             K+
Sbjct: 516 SAKM 519



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 88/365 (24%), Positives = 151/365 (41%), Gaps = 75/365 (20%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLA--NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEW 244
           T+ YN  ++   FG+     E L+   EM  N    D+ITY+ +     R    DE +  
Sbjct: 322 TVMYNSMLQV--FGKAGIYTEALSILKEMEDNNCPPDSITYNELAATYVRAGFLDEGMAV 379

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG- 303
            + M   G+MP+ +TY+ ++D Y K+G+ ++ L L+ +    G  P+   ++ +  M G 
Sbjct: 380 IDTMTSKGVMPNAITYTTVIDAYGKAGREDDALRLFSKMKDLGCAPNVYTYNSVLAMLGK 439

Query: 304 ----------------------------------ESGDYDGIRYVLQEMKSLGVQPNLVV 329
                                             E G ++ +  VL+EMK+ G +P+   
Sbjct: 440 KSRTEDVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKDT 499

Query: 330 YNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMR 389
           +NTL+ +  + G    +  ++ EMV+SG TP   T                         
Sbjct: 500 FNTLISSYARCGSEVDSAKMYGEMVKSGFTPCVTT------------------------- 534

Query: 390 ENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNV 449
                     YN LLN  A  G  + AE + +DM+   + KP+  SY+ +L+ Y   GNV
Sbjct: 535 ----------YNALLNALAHRGDWKAAESVIQDMQTKGF-KPNETSYSLLLHCYSKAGNV 583

Query: 450 DNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCL 509
               ++ +E+ +  V  + +    L+    K R +  + R F      G KPD  +   +
Sbjct: 584 RGIEKVEKEIYDGQVFPSWILLRTLVLSNHKCRHLRGMERAFDQLQKYGYKPDLVVINSM 643

Query: 510 LSVVS 514
           LS+ S
Sbjct: 644 LSMFS 648



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/299 (21%), Positives = 139/299 (46%), Gaps = 3/299 (1%)

Query: 206 IEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
           + ++  EM +   E D  T++T+I+   RC    ++ + +  M K+G  P   TY+A+L+
Sbjct: 481 VNKVLREMKNCGFEPDKDTFNTLISSYARCGSEVDSAKMYGEMVKSGFTPCVTTYNALLN 540

Query: 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325
             A  G  +   S+ +     G+KP+  ++S+L   + ++G+  GI  V +E+    V P
Sbjct: 541 ALAHRGDWKAAESVIQDMQTKGFKPNETSYSLLLHCYSKAGNVRGIEKVEKEIYDGQVFP 600

Query: 326 NLVVYNTLLEAMGKAGK-PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384
           + ++  TL+ +  K     G+ R+ FD++ + G  PD   + +++ ++ + +    A E+
Sbjct: 601 SWILLRTLVLSNHKCRHLRGMERA-FDQLQKYGYKPDLVVINSMLSMFSRNKMFSKAREM 659

Query: 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYG 444
              + E     +   YN L+++        +AE + + ++ S   +PD  SY  ++  + 
Sbjct: 660 LHFIHECGLQPNLFTYNCLMDLYVREDECWKAEEVLKGIQNS-VPEPDVVSYNTVIKGFC 718

Query: 445 SGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
             G +  AI +  EM+  G+   ++     +         D+   V    I+   +P +
Sbjct: 719 RKGLMQEAIRVLSEMTTKGIQPTIVTYNTFLSGYAGMELFDEANEVIRFMIEHNCRPSE 777



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 98/200 (49%), Gaps = 20/200 (10%)

Query: 201 RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTY 260
           R  + +E+  +++     + D +  +++++   R  +F +A E    +++ GL P+  TY
Sbjct: 616 RHLRGMERAFDQLQKYGYKPDLVVINSMLSMFSRNKMFSKAREMLHFIHECGLQPNLFTY 675

Query: 261 SAILDVYAKSG---KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQE 317
           + ++D+Y +     K EEVL   +  V    +PD ++++ + K F   G       VL E
Sbjct: 676 NCLMDLYVREDECWKAEEVLKGIQNSVP---EPDVVSYNTVIKGFCRKGLMQEAIRVLSE 732

Query: 318 MKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE-------MVESGLTPDEKTLTALIK 370
           M + G+QP +V YNT L   G AG       LFDE       M+E    P E T   L+ 
Sbjct: 733 MTTKGIQPTIVTYNTFLS--GYAG-----MELFDEANEVIRFMIEHNCRPSELTYKILVD 785

Query: 371 IYGKARWAKDALELWERMRE 390
            Y KA   ++A++   +++E
Sbjct: 786 GYCKAGKHEEAMDFVTKIKE 805



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 64/344 (18%), Positives = 146/344 (42%), Gaps = 1/344 (0%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN  +  L    + + + ++  EM  N    +  T++T++         +   +    M 
Sbjct: 430 YNSVLAMLGKKSRTEDVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVLREMK 489

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
             G  PD+ T++ ++  YA+ G   +   +Y   V SG+ P    ++ L       GD+ 
Sbjct: 490 NCGFEPDKDTFNTLISSYARCGSEVDSAKMYGEMVKSGFTPCVTTYNALLNALAHRGDWK 549

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               V+Q+M++ G +PN   Y+ LL    KAG       +  E+ +  + P    L  L+
Sbjct: 550 AAESVIQDMQTKGFKPNETSYSLLLHCYSKAGNVRGIEKVEKEIYDGQVFPSWILLRTLV 609

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
               K R  +     ++++++  +  D ++ N++L+M +   +  +A  +   +      
Sbjct: 610 LSNHKCRHLRGMERAFDQLQKYGYKPDLVVINSMLSMFSRNKMFSKAREMLHFIHECG-L 668

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
           +P+ ++Y  ++++Y        A E+ + +       +V+    +I+   +   + + +R
Sbjct: 669 QPNLFTYNCLMDLYVREDECWKAEEVLKGIQNSVPEPDVVSYNTVIKGFCRKGLMQEAIR 728

Query: 490 VFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN 533
           V      +G++P        LS  +  E  ++  +VI  + + N
Sbjct: 729 VLSEMTTKGIQPTIVTYNTFLSGYAGMELFDEANEVIRFMIEHN 772



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 1/101 (0%)

Query: 180 QNLFPM-ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLF 238
           QN  P  + + YN  +K        Q   ++ +EM +  I+   +TY+T ++      LF
Sbjct: 699 QNSVPEPDVVSYNTVIKGFCRKGLMQEAIRVLSEMTTKGIQPTIVTYNTFLSGYAGMELF 758

Query: 239 DEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
           DEA E    M +    P E+TY  ++D Y K+GK EE +  
Sbjct: 759 DEANEVIRFMIEHNCRPSELTYKILVDGYCKAGKHEEAMDF 799



 Score = 39.7 bits (91), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 44/210 (20%), Positives = 86/210 (40%), Gaps = 13/210 (6%)

Query: 121 VRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTRENALLILNSL-------KFWQKSYFF 173
           +R L L   K       E AF   + +  ++P     L+++NS+       K + K+   
Sbjct: 605 LRTLVLSNHKCRHLRGMERAF-DQLQKYGYKPD----LVVINSMLSMFSRNKMFSKAREM 659

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
            ++I    L P     YN  M       +    E++   + ++  E D ++Y+T+I    
Sbjct: 660 LHFIHECGLQP-NLFTYNCLMDLYVREDECWKAEEVLKGIQNSVPEPDVVSYNTVIKGFC 718

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
           R  L  EAI     M   G+ P  VTY+  L  YA     +E   +    +    +P  +
Sbjct: 719 RKGLMQEAIRVLSEMTTKGIQPTIVTYNTFLSGYAGMELFDEANEVIRFMIEHNCRPSEL 778

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGV 323
            + +L   + ++G ++     + ++K + +
Sbjct: 779 TYKILVDGYCKAGKHEEAMDFVTKIKEIDI 808


>gi|18391414|ref|NP_563911.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75167758|sp|Q9ASZ8.1|PPR37_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g12620
 gi|13605505|gb|AAK32746.1|AF361578_1 At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|24111307|gb|AAN46777.1| At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|332190781|gb|AEE28902.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 621

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/361 (26%), Positives = 166/361 (45%), Gaps = 5/361 (1%)

Query: 145 ITEIPHQPTRENALLILNSLKFWQK---SYFFFNWIKSQNLFPMETIFYNVTMKSLRFGR 201
           + E+ H+PT      ++N L    K   +    + +      P E + Y   +K +    
Sbjct: 168 MVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNE-VTYGPVLKVMCKSG 226

Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS 261
           Q  L  +L  +M   +I+LD + YS II    +    D A   F  M   G   D + Y+
Sbjct: 227 QTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYT 286

Query: 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
            ++  +  +G+ ++   L    +     PD +AFS L   F + G       + +EM   
Sbjct: 287 TLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQR 346

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
           G+ P+ V Y +L++   K  +   A  + D MV  G  P+ +T   LI  Y KA    D 
Sbjct: 347 GISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDG 406

Query: 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
           LEL+ +M       D + YNTL+    ++G +E A+ LF++M +S   +PD  SY  +L+
Sbjct: 407 LELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEM-VSRRVRPDIVSYKILLD 465

Query: 442 IYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
                G  + A+E+FE++ +  + +++     +I  +  A ++DD   +F     +GVKP
Sbjct: 466 GLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKP 525

Query: 502 D 502
           D
Sbjct: 526 D 526



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 137/304 (45%), Gaps = 1/304 (0%)

Query: 201 RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTY 260
           +Q+ L+  L  +M    I  +  T S +I C  RC     A     ++ K G  PD VT+
Sbjct: 86  KQYDLVLDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTF 145

Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
           S +++     G+V E L L +R V  G KP  I  + L      +G       ++  M  
Sbjct: 146 STLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVE 205

Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380
            G QPN V Y  +L+ M K+G+  LA  L  +M E  +  D    + +I    K     +
Sbjct: 206 TGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDN 265

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
           A  L+  M    +  D I+Y TL+      G  ++  +L  DM +     PD  +++A++
Sbjct: 266 AFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDM-IKRKITPDVVAFSALI 324

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
           + +   G +  A EL +EM + G++ + +  T LI    K  ++D    +  + + +G  
Sbjct: 325 DCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCG 384

Query: 501 PDDR 504
           P+ R
Sbjct: 385 PNIR 388



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 113/239 (47%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           +T+ Y   +       Q      + + MVS     +  T++ +I    + NL D+ +E F
Sbjct: 351 DTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELF 410

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
            +M   G++ D VTY+ ++  + + GK+E    L++  V+   +PD +++ +L     ++
Sbjct: 411 RKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDN 470

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G+ +    + ++++   ++ ++ +YN ++  M  A K   A  LF  +   G+ PD KT 
Sbjct: 471 GEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTY 530

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
             +I    K     +A  L+ +M E+    +   YN L+      G   ++ +L E++K
Sbjct: 531 NIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIK 589



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/199 (21%), Positives = 90/199 (45%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           +T+ YN  ++      + ++ ++L  EMVS  +  D ++Y  ++         ++A+E F
Sbjct: 421 DTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIF 480

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           E++ K+ +  D   Y+ I+     + KV++   L+      G KPD   ++++     + 
Sbjct: 481 EKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKK 540

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G       + ++M+  G  PN   YN L+ A    G    +  L +E+   G + D  T+
Sbjct: 541 GSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTV 600

Query: 366 TALIKIYGKARWAKDALEL 384
             ++ +    R  K  L++
Sbjct: 601 KMVVDMLSDGRLKKSFLDM 619



 Score = 41.2 bits (95), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 67/154 (43%), Gaps = 1/154 (0%)

Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYG 373
           + QEM     +P L+ ++ L   + +  +  L   L  +M   G+  +  TL+ +I    
Sbjct: 59  LFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCCC 118

Query: 374 KARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDN 433
           + R    A     ++ +  +  D + ++TL+N     G V EA  L + M    + KP  
Sbjct: 119 RCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGH-KPTL 177

Query: 434 YSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
            +  A++N     G V +A+ L + M E G   N
Sbjct: 178 ITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPN 211


>gi|302762967|ref|XP_002964905.1| hypothetical protein SELMODRAFT_167316 [Selaginella moellendorffii]
 gi|300167138|gb|EFJ33743.1| hypothetical protein SELMODRAFT_167316 [Selaginella moellendorffii]
          Length = 773

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 145/622 (23%), Positives = 256/622 (41%), Gaps = 91/622 (14%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITY 225
           ++ S      +K + + P   I YN  + +  + G  ++ +  L  +M    I+ D ITY
Sbjct: 133 YEASLHLLARMKKEQVEP-NLITYNTVLNACSKGGLDWEGLLNLFAQMRHEGIQPDLITY 191

Query: 226 STIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS---GKVEEVLSLYER 282
           +T+++      L ++A   F+ M ++G++ D VTY +++D +A S   G+VEE+L   E 
Sbjct: 192 NTLLSACSSRGLVEQAAMVFKTMNESGVVADAVTYKSLVDTFAGSNQLGRVEELLREMED 251

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
               G  PD   ++ L + + ++G+  G   V ++M+  G  P++  Y+TLL   G  G 
Sbjct: 252 ---EGNPPDIAGYNSLIEAYADAGNVHGAAGVFKQMQRGGCAPDVETYSTLLRIYGNQGC 308

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
               RSLF +M +    P   T  +LI+++G+  + ++++ L+  M ++    D   Y+ 
Sbjct: 309 FEQVRSLFSDMKDLSTPPTVATYNSLIQVFGEGGYFQESINLFHDMVDSGVKPDDATYSA 368

Query: 403 LLNMCADIGLVEEAERLFEDM--------------KLSDYCK------------------ 430
           LL++C   GL  EA ++ + M               +S Y K                  
Sbjct: 369 LLSVCGRGGLTREAAKIHQHMLTNESTPSLEASAGLISSYGKMAMYKDALVSYYRIREAG 428

Query: 431 --PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLV 488
             P   +Y A++  Y  GG    A      M++ G    V     +++   K    D+ +
Sbjct: 429 LDPQVSAYDALIQGYAKGGLYVEAGSTLYAMNKAGFQAPVSSVNSVMEAYSKVGLHDEAL 488

Query: 489 RVFG-VSIDRGVKPDDRLCGCLLSV--------------VSLCETSEDVGKVITCL---- 529
             F  +    G + D+R    LL V              V + ETS+  G  + CL    
Sbjct: 489 EFFSELQQKEGSEVDERTHETLLGVYCDMGLLEEAKEEFVIIKETSKVPGARVYCLLLSL 548

Query: 530 ----------QQANPKLVAFLNLIE----------DNSTGFENIKEEFRNVIKDTEVDAR 569
                      Q   +++A   L +          D    ++ ++  F + +K  +++  
Sbjct: 549 CVRRSKWDYATQLLDEMIAAGGLHQVVVGIVRGTYDADFSWQVVEYAF-DGLKLRDMEES 607

Query: 570 RPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTAL 629
             F N L+++    N   RA  +L      G +P    KT   WS++V  +S GA  TAL
Sbjct: 608 MDFYNALVELLVYCNQKARAARVLADAMQRGAFPEAFIKTRRVWSVNVHRMSAGATVTAL 667

Query: 630 EEWMWTLAKIVLREEVLPQLFLAETGTG---THKFSQGL--ATAFASHVNKLAAPFRQSE 684
             W   L +     E LP +       G    H+  + L  A    + +   AAP   + 
Sbjct: 668 STWFNDLQEC----EKLPFMTSIVVSCGDIEDHRKVEDLPVAKVVQAFLKHYAAPLETAS 723

Query: 685 GKAGCFVATREDLVSWVQARPS 706
              G  V   E L  W+ + PS
Sbjct: 724 WNEGRIVCKGEALKPWLSSMPS 745



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 128/529 (24%), Positives = 220/529 (41%), Gaps = 90/529 (17%)

Query: 167 WQKSYFFFNWIKSQNLF-PMETIFYNVTMKSLRFGRQ--FQLIEQLANEMVSNEIELDNI 223
           W ++   F +++ Q    P E I+   T+     GR+   +   ++  +M  N+++ +  
Sbjct: 62  WHRALRLFKYMQRQQWCKPTEHIY---TIMIGIMGREGLLEKCSEIFEDMPENDVKWNVY 118

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG-KVEEVLSLYER 282
            ++ +I    R   ++ ++    RM K  + P+ +TY+ +L+  +K G   E +L+L+ +
Sbjct: 119 AFTALINAYGRNGQYEASLHLLARMKKEQVEPNLITYNTVLNACSKGGLDWEGLLNLFAQ 178

Query: 283 GVASGWKPDPIAFSVL----------------GKMFGESGDY-DGIRY------------ 313
               G +PD I ++ L                 K   ESG   D + Y            
Sbjct: 179 MRHEGIQPDLITYNTLLSACSSRGLVEQAAMVFKTMNESGVVADAVTYKSLVDTFAGSNQ 238

Query: 314 ------VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
                 +L+EM+  G  P++  YN+L+EA   AG    A  +F +M   G  PD +T + 
Sbjct: 239 LGRVEELLREMEDEGNPPDIAGYNSLIEAYADAGNVHGAAGVFKQMQRGGCAPDVETYST 298

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           L++IYG     +    L+  M++   P     YN+L+ +  + G  +E+  LF DM +  
Sbjct: 299 LLRIYGNQGCFEQVRSLFSDMKDLSTPPTVATYNSLIQVFGEGGYFQESINLFHDM-VDS 357

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK-ARRIDD 486
             KPD+ +Y+A+L++ G GG    A ++ + M       ++     LI   GK A   D 
Sbjct: 358 GVKPDDATYSALLSVCGRGGLTREAAKIHQHMLTNESTPSLEASAGLISSYGKMAMYKDA 417

Query: 487 LV---RVFGVSIDRGVKPDDRL------------CGCLL-------------SVVSLCET 518
           LV   R+    +D  V   D L             G  L             SV S+ E 
Sbjct: 418 LVSYYRIREAGLDPQVSAYDALIQGYAKGGLYVEAGSTLYAMNKAGFQAPVSSVNSVMEA 477

Query: 519 SEDVG------KVITCLQQANPKLV------AFLNLIEDNSTGFENIKEEFRNVIKDTEV 566
              VG      +  + LQQ     V        L +  D     E  KEEF  + + ++V
Sbjct: 478 YSKVGLHDEALEFFSELQQKEGSEVDERTHETLLGVYCDMGL-LEEAKEEFVIIKETSKV 536

Query: 567 DARRPFCNCLIDICRNRNLNERAHELL----YLGTLYGLYPGLHNKTLD 611
              R +C  L+ +C  R+  + A +LL      G L+ +  G+   T D
Sbjct: 537 PGARVYC-LLLSLCVRRSKWDYATQLLDEMIAAGGLHQVVVGIVRGTYD 584



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 127/294 (43%), Gaps = 14/294 (4%)

Query: 295 FSVLGKMFGESGDYD-GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
           FS++ + F    D+   +R      +    +P   +Y  ++  MG+ G       +F++M
Sbjct: 49  FSLIFREFAARSDWHRALRLFKYMQRQQWCKPTEHIYTIMIGIMGREGLLEKCSEIFEDM 108

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
            E+ +  +    TALI  YG+    + +L L  RM++ +   + I YNT+LN C+  GL 
Sbjct: 109 PENDVKWNVYAFTALINAYGRNGQYEASLHLLARMKKEQVEPNLITYNTVLNACSKGGLD 168

Query: 414 EEA-ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
            E    LF  M+  +  +PD  +Y  +L+   S G V+ A  +F+ M+E GV  + +   
Sbjct: 169 WEGLLNLFAQMR-HEGIQPDLITYNTLLSACSSRGLVEQAAMVFKTMNESGVVADAVTYK 227

Query: 473 CLIQCLGKAR---RIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCL 529
            L+     +    R+++L+R      D G  PD      L+   +          V   +
Sbjct: 228 SLVDTFAGSNQLGRVEELLREME---DEGNPPDIAGYNSLIEAYADAGNVHGAAGVFKQM 284

Query: 530 QQAN--PKLVAFLNL--IEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDI 579
           Q+    P +  +  L  I  N   FE ++  F + +KD          N LI +
Sbjct: 285 QRGGCAPDVETYSTLLRIYGNQGCFEQVRSLFSD-MKDLSTPPTVATYNSLIQV 337


>gi|357481229|ref|XP_003610900.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512235|gb|AES93858.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1508

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/366 (24%), Positives = 171/366 (46%), Gaps = 13/366 (3%)

Query: 176 WIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTII-----T 230
           + K++++       YN  M        F+ + ++ N M     E D ++++T+I     +
Sbjct: 253 FAKAESVIADTVQVYNAMMGVYARNGNFEKVNEMFNLMRERGCEPDIVSFNTLINAKVKS 312

Query: 231 CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
           CA    L   AIE  + + K GL PD +TY+ ++   ++   ++E + ++    ++  +P
Sbjct: 313 CATVSGL---AIELLDEVGKFGLRPDIITYNTLISACSRESNLKEAIGVFSHMESNRCQP 369

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
           D   ++ +  ++G  G      ++ +++KS G  P+ V YN+LL A  K G     R + 
Sbjct: 370 DLWTYNAMISVYGRCGFALKAEHLFEKLKSNGFSPDAVTYNSLLYAFSKEGNTEKVRDIS 429

Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
           +EMV+ G   DE T   +I +YGK     +AL L+  M+ +    D + Y  L+++    
Sbjct: 430 EEMVKMGFGKDEMTYNTIIHMYGKHGRHDEALRLYRDMKSSGRNPDAVTYTVLIDLLGKA 489

Query: 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG 470
             +EEA ++  +M L    KP  ++Y+A++  Y   G    A E F  M E G+  + + 
Sbjct: 490 SKIEEASKVMSEM-LDAGVKPTLHTYSALICAYAKVGRRVEAEETFNRMRESGIKADHLA 548

Query: 471 CTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQ 530
            + ++    +   I     ++   I+ G  PD  L   +L  +      E++G VI  + 
Sbjct: 549 YSVMLDFFLRFNEIKKAAALYQEMIEAGFTPDTGLYEVMLPAL----VRENMGDVIERVV 604

Query: 531 QANPKL 536
           Q   +L
Sbjct: 605 QDTKEL 610



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 102/473 (21%), Positives = 199/473 (42%), Gaps = 7/473 (1%)

Query: 232  AKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291
            A+  NLF E  + +  M   G  P    Y  ++ +  +  +V +V  +      +G+KPD
Sbjct: 905  AQAGNLF-EVQKVYNGMKAAGYFPTMHLYRLMIGLLCRFKRVRDVRVMLSEMGEAGFKPD 963

Query: 292  PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
               F+ + K++    ++  +  + Q ++  G+ P+   YNTL+    +  +P    SL  
Sbjct: 964  LQIFNSVLKLYSSIEEFQNMGVIYQMIQDAGLAPDEETYNTLITMYCRDHRPEEGLSLMH 1023

Query: 352  EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411
            +M   GL P   T  ++I  + K +    A EL+E +R N + +D   Y+ ++ M    G
Sbjct: 1024 KMKSLGLEPKRDTYRSMIAAFSKQQLYDQAEELFEELRSNGYKLDRSFYHLMMKMYRTSG 1083

Query: 412  LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC 471
              ++AE L E MK +   +P+  +   ++  YG  G  + A  + + +  +G  ++ +  
Sbjct: 1084 DHQKAENLLEIMKEAG-IEPNTATMHLLMVSYGKSGQPEEADRILKNLRTMGAVLDTLPY 1142

Query: 472  TCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ 531
            + +I    K       +       +  ++PD R+  C +   SL     D   ++  LQ 
Sbjct: 1143 SSVIDAYLKKGDAKAGIEKLTEMKEAAIEPDHRIWTCFIRAASLSGEVNDANNLLNALQA 1202

Query: 532  ANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHE 591
                L   + L+ + S    +  ++    ++  E +A   F N L+D+     L   A  
Sbjct: 1203 VGFDLP--IRLLGEKSESLVSEVDQCLGRLEHVEDNAAFNFVNALVDLLWAFELRATASW 1260

Query: 592  LLYLGTLYGLY-PGLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAKIVLRE-EVLPQL 649
            +  L     +Y   +      +W  D R LS G+A   L  W+  +    L+     P+ 
Sbjct: 1261 VFQLAIKRSIYRHDIFRVAQKDWGADFRKLSAGSALVGLTLWLDHMQDASLQGYPESPKS 1320

Query: 650  FLAETGTGTHKFSQGLATAFASHVNKLAAPFRQSEGKAGCFVATREDLVSWVQ 702
             +  TGT  +     L +   + + ++ +PF   + + G  VA    L  W++
Sbjct: 1321 VVLITGTAEYNMV-SLDSTLKAFLWEMGSPFLPCKTRHGVLVAKAHSLRMWLK 1372



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 99/211 (46%)

Query: 221  DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
            D  TY+T+IT   R +  +E +    +M   GL P   TY +++  ++K    ++   L+
Sbjct: 998  DEETYNTLITMYCRDHRPEEGLSLMHKMKSLGLEPKRDTYRSMIAAFSKQQLYDQAEELF 1057

Query: 281  ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
            E   ++G+K D   + ++ KM+  SGD+     +L+ MK  G++PN    + L+ + GK+
Sbjct: 1058 EELRSNGYKLDRSFYHLMMKMYRTSGDHQKAENLLEIMKEAGIEPNTATMHLLMVSYGKS 1117

Query: 341  GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
            G+P  A  +   +   G   D    +++I  Y K   AK  +E    M+E     D  ++
Sbjct: 1118 GQPEEADRILKNLRTMGAVLDTLPYSSVIDAYLKKGDAKAGIEKLTEMKEAAIEPDHRIW 1177

Query: 401  NTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
               +   +  G V +A  L   ++   +  P
Sbjct: 1178 TCFIRAASLSGEVNDANNLLNALQAVGFDLP 1208



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 65/285 (22%), Positives = 111/285 (38%), Gaps = 74/285 (25%)

Query: 332 TLLEAMGKAGKPGLA----------------------------------RSLFDEMVESG 357
           T+L  +GKA + G+A                                    +F+ M E G
Sbjct: 235 TILSVLGKANQEGIAVEIFAKAESVIADTVQVYNAMMGVYARNGNFEKVNEMFNLMRERG 294

Query: 358 LTPDEKTLTALI--KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEE 415
             PD  +   LI  K+   A  +  A+EL + + +     D I YNTL++ C+    ++E
Sbjct: 295 CEPDIVSFNTLINAKVKSCATVSGLAIELLDEVGKFGLRPDIITYNTLISACSRESNLKE 354

Query: 416 AERLFEDMKLSDYCKPDNYSYTAMLNIYG------------------------------- 444
           A  +F  M+ S+ C+PD ++Y AM+++YG                               
Sbjct: 355 AIGVFSHME-SNRCQPDLWTYNAMISVYGRCGFALKAEHLFEKLKSNGFSPDAVTYNSLL 413

Query: 445 ----SGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
                 GN +   ++ EEM ++G   + M    +I   GK  R D+ +R++      G  
Sbjct: 414 YAFSKEGNTEKVRDISEEMVKMGFGKDEMTYNTIIHMYGKHGRHDEALRLYRDMKSSGRN 473

Query: 501 PDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAFLNLI 543
           PD      L+ ++      E+  KV++ +  A   P L  +  LI
Sbjct: 474 PDAVTYTVLIDLLGKASKIEEASKVMSEMLDAGVKPTLHTYSALI 518



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 70/302 (23%), Positives = 128/302 (42%), Gaps = 32/302 (10%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + Y V +  L    + +   ++ +EM+   ++    TYS +I    +     EA E F
Sbjct: 475 DAVTYTVLIDLLGKASKIEEASKVMSEMLDAGVKPTLHTYSALICAYAKVGRRVEAEETF 534

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
            RM ++G+  D + YS +LD + +  ++++  +LY+  + +G+ PD   + V+       
Sbjct: 535 NRMRESGIKADHLAYSVMLDFFLRFNEIKKAAALYQEMIEAGFTPDTGLYEVMLPALVRE 594

Query: 306 GDYDGIRYVLQEMKSLG-VQPNLV--------VYNTLLEAMGKAGKPG--LARSLF---- 350
              D I  V+Q+ K LG + P+ +         Y+   + +  A   G  L R +F    
Sbjct: 595 NMGDVIERVVQDTKELGSMNPHDISSVLVKGGCYDHGAKMLKVAISNGYELDREIFLSIM 654

Query: 351 ------------DEMVE--SGLTPDEKTLT--ALIKIYGKARWAKDALELWERMRENKWP 394
                        E+VE      PD+  +   ALI I  KA     ALE +         
Sbjct: 655 SSYSSSARYSEACELVEFFREHAPDDIQMITEALIIILCKAGKLDAALEEYRSRGGLGTF 714

Query: 395 MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIE 454
               +Y +L++ C      + A +LF DM+ +   +P    Y +M+++Y   G  + A  
Sbjct: 715 RSCTMYESLIHECTKSEQFDIASQLFSDMRFNG-VEPSECLYQSMVSVYCRIGFPETAQH 773

Query: 455 LF 456
           L 
Sbjct: 774 LL 775



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 71/389 (18%), Positives = 163/389 (41%), Gaps = 16/389 (4%)

Query: 225  YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
            Y ++I    +   FD A + F  M   G+ P E  Y +++ VY + G  E    L     
Sbjct: 720  YESLIHECTKSEQFDIASQLFSDMRFNGVEPSECLYQSMVSVYCRIGFPETAQHLLYHAE 779

Query: 285  ASGWKPDPIAFSVLG--KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
             +    D +   ++   + +G+   +     +++ ++    + +  V+N L+ A   +G 
Sbjct: 780  KNDIILDNVTVHIIDIIETYGKLKMWQSAESIVENLRQRCSKMDRKVWNALIHAYAFSGC 839

Query: 343  PGLARSLFDEMVESGLTPDEKTLTALIK-IYGKARWAKDALELWERMRENKWPMDFILYN 401
               AR++F+ M+  G +P  +++  L++ +    R +    EL+  ++E +  MD  +  
Sbjct: 840  YERARAIFNTMMREGPSPTVESVNGLLQALIVDGRLS----ELYVVIQELQ-DMDLKISK 894

Query: 402  T----LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE 457
            +    +L   A  G + E ++++  MK + Y  P  + Y  M+ +      V +   +  
Sbjct: 895  SSILLMLEAFAQAGNLFEVQKVYNGMKAAGYF-PTMHLYRLMIGLLCRFKRVRDVRVMLS 953

Query: 458  EMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCE 517
            EM E G   ++     +++         ++  ++ +  D G+ PD+     L+++     
Sbjct: 954  EMGEAGFKPDLQIFNSVLKLYSSIEEFQNMGVIYQMIQDAGLAPDEETYNTLITMYCRDH 1013

Query: 518  TSEDVGKVITCLQQAN--PKLVAFLNLIEDNS-TGFENIKEEFRNVIKDTEVDARRPFCN 574
              E+   ++  ++     PK   + ++I   S     +  EE    ++       R F +
Sbjct: 1014 RPEEGLSLMHKMKSLGLEPKRDTYRSMIAAFSKQQLYDQAEELFEELRSNGYKLDRSFYH 1073

Query: 575  CLIDICRNRNLNERAHELLYLGTLYGLYP 603
             ++ + R    +++A  LL +    G+ P
Sbjct: 1074 LMMKMYRTSGDHQKAENLLEIMKEAGIEP 1102



 Score = 42.0 bits (97), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 33/174 (18%), Positives = 74/174 (42%), Gaps = 1/174 (0%)

Query: 149  PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
            P + T  + +   +  + + ++   F  ++S N + ++  FY++ MK  R     Q  E 
Sbjct: 1032 PKRDTYRSMIAAFSKQQLYDQAEELFEELRS-NGYKLDRSFYHLMMKMYRTSGDHQKAEN 1090

Query: 209  LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
            L   M    IE +  T   ++    +    +EA    + +   G + D + YS+++D Y 
Sbjct: 1091 LLEIMKEAGIEPNTATMHLLMVSYGKSGQPEEADRILKNLRTMGAVLDTLPYSSVIDAYL 1150

Query: 269  KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG 322
            K G  +  +        +  +PD   ++   +    SG+ +    +L  ++++G
Sbjct: 1151 KKGDAKAGIEKLTEMKEAAIEPDHRIWTCFIRAASLSGEVNDANNLLNALQAVG 1204


>gi|357502623|ref|XP_003621600.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496615|gb|AES77818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 890

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/270 (30%), Positives = 146/270 (54%), Gaps = 4/270 (1%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKV--EEVLSLYE 281
           ++S +I+   R   F +A++ F  M   G++P+ +TY++I+D  AK G+V  + V+  Y+
Sbjct: 250 SFSAMISAFGRNGRFPDAVDLFRSMSSWGVVPNVITYNSIIDAGAK-GEVSFDVVVKFYD 308

Query: 282 RGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG 341
             +A+G  PD + ++ L  +    G ++  + +L EM    + P++  YNT L+ + KAG
Sbjct: 309 EMIANGLMPDRLTYNSLLSVCASKGMWEMAQKLLSEMDHRCIVPDVFTYNTYLDTLCKAG 368

Query: 342 KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYN 401
           +  LAR +F+EM    + P+  T +A++  Y KA   +DAL L+E M+     +D + YN
Sbjct: 369 QIDLARRVFEEMSSKRVWPNVVTYSAMMDGYAKANLLEDALNLYEEMKLRSVCLDRVSYN 428

Query: 402 TLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461
           TL+ +   +G ++EA    ++M+ S   + D  +Y A+L+ YG  G  D    LFEEM  
Sbjct: 429 TLVGIYEKLGNLDEAIEKCKEMERSGINR-DVVTYNALLSGYGKHGMYDEVRRLFEEMKA 487

Query: 462 LGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
             +  N +  + +I    K     + + V+
Sbjct: 488 RNIYPNTLTYSTMIDMYTKGEMFQEAMDVY 517



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 130/566 (22%), Positives = 245/566 (43%), Gaps = 50/566 (8%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           F++ + +  L P + + YN  +        +++ ++L +EM    I  D  TY+T +   
Sbjct: 306 FYDEMIANGLMP-DRLTYNSLLSVCASKGMWEMAQKLLSEMDHRCIVPDVFTYNTYLDTL 364

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +    D A   FE M    + P+ VTYSA++D YAK+  +E+ L+LYE         D 
Sbjct: 365 CKAGQIDLARRVFEEMSSKRVWPNVVTYSAMMDGYAKANLLEDALNLYEEMKLRSVCLDR 424

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           ++++ L  ++ + G+ D      +EM+  G+  ++V YN LL   GK G     R LF+E
Sbjct: 425 VSYNTLVGIYEKLGNLDEAIEKCKEMERSGINRDVVTYNALLSGYGKHGMYDEVRRLFEE 484

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M    + P+  T + +I +Y K    ++A++++   +  +  +D + Y+ +++     GL
Sbjct: 485 MKARNIYPNTLTYSTMIDMYTKGEMFQEAMDVYREFKMARLEIDVVFYSAIIDTLCKNGL 544

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLN-----------IYGSGGNVDNAIELFEEMSE 461
           +E +  L   M +    KP+  ++ ++++           + GS   +D  IE    +  
Sbjct: 545 MESSIMLLMAM-MEKGIKPNVVTFNSIIDASQQSPTLEYGVNGSSDAIDYPIEQSSPIVI 603

Query: 462 LGVAINVMGCTCLIQCL-------------GKARRIDD--LVRVFGVSIDRGVKPDDRLC 506
            G   N  G   +++                ++ R D   ++ +F    +  +KP+    
Sbjct: 604 DGAFQNKPGEDRILKMFEQLAAEKAGHLKKNRSGRQDKHCILWLFQKMHELNIKPNVVTF 663

Query: 507 GCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLI-----EDNSTGFENIKEEFRNVI 561
             +L+  SLC + ED   ++  L+  + ++    N +     E      E + +E   + 
Sbjct: 664 SAILNACSLCNSYEDASLLLDTLRLFDNQVYGVTNGLLMGYREQVWLSAETLFDELMCMD 723

Query: 562 KDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWS---LDVR 618
             T       F N L D+  +      A  ++  G    ++ G       EWS   LD+ 
Sbjct: 724 PSTS----SAFYNALTDMLWHFGQKRGAEMVVIEGRRRNVWKG-------EWSISCLDLH 772

Query: 619 SLSVGAAQTALEEWMWTLAKIVLREEVLPQLFLAETGTGTHKFSQG---LATAFASHVNK 675
            +S GAA   +  W+ +L   + +   LP+     TG G H    G   L  A  + +N 
Sbjct: 773 LMSCGAACAMVHSWLLSLHSSLFQGIQLPKFVNILTGWGKHSKVLGDGTLKKAVEALLNG 832

Query: 676 LAAPFRQSEGKAGCFVATREDLVSWV 701
           + +PFR  E   G  V+  E L +W+
Sbjct: 833 MGSPFRIYENNLGRLVSPGEVLTAWL 858



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/331 (23%), Positives = 150/331 (45%), Gaps = 38/331 (11%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGR-QFQLIEQLANEMVSNEIELDNITYSTIITC 231
            F  + S  + P   I YN  + +   G   F ++ +  +EM++N +  D +TY+++++ 
Sbjct: 270 LFRSMSSWGVVP-NVITYNSIIDAGAKGEVSFDVVVKFYDEMIANGLMPDRLTYNSLLSV 328

Query: 232 AKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291
                +++ A +    M    ++PD  TY+  LD   K+G++                  
Sbjct: 329 CASKGMWEMAQKLLSEMDHRCIVPDVFTYNTYLDTLCKAGQI------------------ 370

Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
                            D  R V +EM S  V PN+V Y+ +++   KA     A +L++
Sbjct: 371 -----------------DLARRVFEEMSSKRVWPNVVTYSAMMDGYAKANLLEDALNLYE 413

Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411
           EM    +  D  +   L+ IY K     +A+E  + M  +    D + YN LL+     G
Sbjct: 414 EMKLRSVCLDRVSYNTLVGIYEKLGNLDEAIEKCKEMERSGINRDVVTYNALLSGYGKHG 473

Query: 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC 471
           + +E  RLFE+MK  +   P+  +Y+ M+++Y  G     A++++ E     + I+V+  
Sbjct: 474 MYDEVRRLFEEMKARN-IYPNTLTYSTMIDMYTKGEMFQEAMDVYREFKMARLEIDVVFY 532

Query: 472 TCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           + +I  L K   ++  + +    +++G+KP+
Sbjct: 533 SAIIDTLCKNGLMESSIMLLMAMMEKGIKPN 563



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/324 (25%), Positives = 144/324 (44%), Gaps = 42/324 (12%)

Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
           SA++    + G++   L L+ER    G+     +FS +   FG +G +     + + M S
Sbjct: 217 SAMIGTLGRLGEINLALGLFERARLEGYGSTVHSFSAMISAFGRNGRFPDAVDLFRSMSS 276

Query: 321 LGVQPNLVVYNTLLEAMGKAGKPG--LARSLFDEMVESGLTPDEKTLTALIKI-YGKARW 377
            GV PN++ YN++++A G  G+    +    +DEM+ +GL PD  T  +L+ +   K  W
Sbjct: 277 WGVVPNVITYNSIIDA-GAKGEVSFDVVVKFYDEMIANGLMPDRLTYNSLLSVCASKGMW 335

Query: 378 AKD----------------------------------ALELWERMRENK-WPMDFILYNT 402
                                                A  ++E M   + WP + + Y+ 
Sbjct: 336 EMAQKLLSEMDHRCIVPDVFTYNTYLDTLCKAGQIDLARRVFEEMSSKRVWP-NVVTYSA 394

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
           +++  A   L+E+A  L+E+MKL   C  D  SY  ++ IY   GN+D AIE  +EM   
Sbjct: 395 MMDGYAKANLLEDALNLYEEMKLRSVCL-DRVSYNTLVGIYEKLGNLDEAIEKCKEMERS 453

Query: 463 GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDV 522
           G+  +V+    L+   GK    D++ R+F     R + P+      ++ + +  E  ++ 
Sbjct: 454 GINRDVVTYNALLSGYGKHGMYDEVRRLFEEMKARNIYPNTLTYSTMIDMYTKGEMFQEA 513

Query: 523 GKVITCLQQANPKL-VAFLNLIED 545
             V    + A  ++ V F + I D
Sbjct: 514 MDVYREFKMARLEIDVVFYSAIID 537


>gi|225447241|ref|XP_002272784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g73710-like [Vitis vinifera]
          Length = 1008

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 168/358 (46%), Gaps = 3/358 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D + Y+ ++    +  L+D+A   F+ M   G  P+E TY++++ +++    V+E   + 
Sbjct: 553 DVVEYNVMVKAYGKAKLYDKAFSLFKGMRNHGTWPNESTYNSLIQMFSGGDLVDEARGIL 612

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
                 G+KP  + FS +   +   G       V +EM  LGV+PN VVY +L+    + 
Sbjct: 613 AEMQKMGFKPQCLTFSAVIACYARLGRLPDAVGVYEEMVRLGVKPNEVVYGSLINGFSET 672

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G    A   F +M E G++ ++  LT+LIK Y K    + A  L+E M++ +   D +  
Sbjct: 673 GNVEEALCYFRKMDEFGISANQIVLTSLIKAYSKVGCLEGAKTLYEGMKDLEGGPDIVAS 732

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           N+++N+ AD+GLV EA+ +F+D++       D  S+  M+ +Y + G +D AI++ +EM 
Sbjct: 733 NSMINLYADLGLVSEAKLIFDDLRQKG--SADGVSFATMMYLYKNLGMLDEAIDVADEMK 790

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCET-S 519
           + G+  +      ++ C     ++     +    I R + PD      + +V+      +
Sbjct: 791 QSGLLRDCASFNKVMACYATNGQLSACGELLHEMISRRILPDTGTFKVMFTVLKKGGLPT 850

Query: 520 EDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLI 577
           E V ++ +  Q+  P     +     ++ G      E      + EVD    F N  I
Sbjct: 851 EAVTQLESSYQEGKPYARQAVITSVFSTVGLHAFALESCETFLNAEVDLDSSFYNVAI 908



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 82/407 (20%), Positives = 162/407 (39%), Gaps = 67/407 (16%)

Query: 165 KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNIT 224
           K + K++  F  +++   +P E+  YN  ++    G        +  EM     +   +T
Sbjct: 568 KLYDKAFSLFKGMRNHGTWPNEST-YNSLIQMFSGGDLVDEARGILAEMQKMGFKPQCLT 626

Query: 225 YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
           +S +I C  R     +A+  +E M + G+ P+EV Y ++++ ++++G VEE L  + +  
Sbjct: 627 FSAVIACYARLGRLPDAVGVYEEMVRLGVKPNEVVYGSLINGFSETGNVEEALCYFRKMD 686

Query: 285 ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344
             G   + I  + L K + + G  +G + + + MK L   P++V  N+++      G   
Sbjct: 687 EFGISANQIVLTSLIKAYSKVGCLEGAKTLYEGMKDLEGGPDIVASNSMINLYADLGLVS 746

Query: 345 LARSLF----------------------------------DEMVESGLTPDEKTLTALIK 370
            A+ +F                                  DEM +SGL  D  +   ++ 
Sbjct: 747 EAKLIFDDLRQKGSADGVSFATMMYLYKNLGMLDEAIDVADEMKQSGLLRDCASFNKVMA 806

Query: 371 IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEA-------------- 416
            Y          EL   M   +   D   +  +  +    GL  EA              
Sbjct: 807 CYATNGQLSACGELLHEMISRRILPDTGTFKVMFTVLKKGGLPTEAVTQLESSYQEGKPY 866

Query: 417 ------ERLFEDMKLSDY----CKP--------DNYSYTAMLNIYGSGGNVDNAIELFEE 458
                   +F  + L  +    C+         D+  Y   +  YG+ G++D A+++F +
Sbjct: 867 ARQAVITSVFSTVGLHAFALESCETFLNAEVDLDSSFYNVAIYAYGASGSIDKALKMFMK 926

Query: 459 MSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRL 505
           M + G+  +++    L  C GKA  ++ L R++     R ++P++ L
Sbjct: 927 MQDEGLEPDLVTYINLAGCYGKAGMLEGLKRIYSQLKYREIEPNESL 973



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 114/585 (19%), Positives = 215/585 (36%), Gaps = 119/585 (20%)

Query: 61  TLSLSEQLKPLSSTTLSPTKNDRTPLLSKPKSTWVNP---------TKPRRSVLSLQRQK 111
           TLS S+  K L     S T+  R      P+   V P         T    +  S+ R+K
Sbjct: 64  TLSSSKIDKSLGRNAYSHTQKQRL----NPRGARVFPGFKLQCHSRTVALPTKTSISRRK 119

Query: 112 RSTYSYNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTRENALLILNSLKFWQKSY 171
           +      P +       R L   +N E+         P + T     +IL     W++  
Sbjct: 120 KKYSGVLPSI------LRALESENNIEDTLSSCGKLSPKEQT-----VILKEQSSWERVL 168

Query: 172 FFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITC 231
             F WIKSQ  +    I YNV ++ L   +++  +     EM  N +   N TY  ++  
Sbjct: 169 RVFEWIKSQEDYVPNVIHYNVVLRVLGRAQKWDELRLCWIEMAKNGVLPTNNTYGMLVDV 228

Query: 232 AKRCNLFDEAI-------------------------------EWFERMYK---------- 250
             +  L  EA+                               +W +R Y+          
Sbjct: 229 YGKAGLVKEALLWIKHMKLRGVFPDEVAMNTVVRVLKDAGEFDWADRFYRDWCVGKVELG 288

Query: 251 -------------TGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP---IA 294
                         G  P  + +    +++   G+   + ++ +     G +  P     
Sbjct: 289 DFDLESVADSDDEIGSAPVSLKHFLSTELFKIGGR-RPISNIMDSSNTDGSRRKPRLTAT 347

Query: 295 FSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMV 354
           ++ L  ++G++G       V  EM  LGV  + + +NT++   G  G    A +L  EM 
Sbjct: 348 YNTLIDLYGKAGRLKDAADVFAEMLKLGVAMDTITFNTMIYTCGSHGHLSEAETLLTEME 407

Query: 355 ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
           E G++PD KT    + +Y        AL+ + ++RE     D + +  +L++  +  +V 
Sbjct: 408 ERGISPDTKTYNIFLSLYADGGNIDAALKCYRKIREVGLFPDVVTHRAVLHVLCERNMVG 467

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNA---------------------I 453
           E E +  +MK S   + D +S   ++ +Y + G +D A                     I
Sbjct: 468 EVETVIAEMKRSR-VRVDEHSIPVVIKMYVNEGLLDKAKIFLEEHLLEDELSSRTRVAII 526

Query: 454 ELFEEMS-------------ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
           + + E               +LG   +V+    +++  GKA+  D    +F    + G  
Sbjct: 527 DAYAEKGLWAEAENVFIGKRDLGQKKDVVEYNVMVKAYGKAKLYDKAFSLFKGMRNHGTW 586

Query: 501 PDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAFLNLI 543
           P++     L+ + S  +  ++   ++  +Q+    P+ + F  +I
Sbjct: 587 PNESTYNSLIQMFSGGDLVDEARGILAEMQKMGFKPQCLTFSAVI 631



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 78/187 (41%), Gaps = 2/187 (1%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           +N  M       Q     +L +EM+S  I  D  T+  + T  K+  L  EA+   E  Y
Sbjct: 801 FNKVMACYATNGQLSACGELLHEMISRRILPDTGTFKVMFTVLKKGGLPTEAVTQLESSY 860

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
           + G        + I  V++  G     L   E  + +    D   ++V    +G SG  D
Sbjct: 861 QEG--KPYARQAVITSVFSTVGLHAFALESCETFLNAEVDLDSSFYNVAIYAYGASGSID 918

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               +  +M+  G++P+LV Y  L    GKAG     + ++ ++    + P+E    A+I
Sbjct: 919 KALKMFMKMQDEGLEPDLVTYINLAGCYGKAGMLEGLKRIYSQLKYREIEPNESLFKAII 978

Query: 370 KIYGKAR 376
             Y  A+
Sbjct: 979 DAYRSAK 985



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 60/342 (17%), Positives = 123/342 (35%), Gaps = 70/342 (20%)

Query: 212 EMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG 271
           EMV   ++ + + Y ++I         +EA+ +F +M + G+  +++  ++++  Y+K G
Sbjct: 649 EMVRLGVKPNEVVYGSLINGFSETGNVEEALCYFRKMDEFGISANQIVLTSLIKAYSKVG 708

Query: 272 KVEEVLSLYERGVASGWKPDPIAFSVLGKMFG----------------ESGDYDGIRY-- 313
            +E   +LYE        PD +A + +  ++                 + G  DG+ +  
Sbjct: 709 CLEGAKTLYEGMKDLEGGPDIVASNSMINLYADLGLVSEAKLIFDDLRQKGSADGVSFAT 768

Query: 314 ----------------VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
                           V  EMK  G+  +   +N ++      G+      L  EM+   
Sbjct: 769 MMYLYKNLGMLDEAIDVADEMKQSGLLRDCASFNKVMACYATNGQLSACGELLHEMISRR 828

Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWP----------------------- 394
           + PD  T   +  +  K     +A+   E   +   P                       
Sbjct: 829 ILPDTGTFKVMFTVLKKGGLPTEAVTQLESSYQEGKPYARQAVITSVFSTVGLHAFALES 888

Query: 395 ----------MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY-CKPDNYSYTAMLNIY 443
                     +D   YN  +      G +++A ++F  MK+ D   +PD  +Y  +   Y
Sbjct: 889 CETFLNAEVDLDSSFYNVAIYAYGASGSIDKALKMF--MKMQDEGLEPDLVTYINLAGCY 946

Query: 444 GSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
           G  G ++    ++ ++    +  N      +I     A+R D
Sbjct: 947 GKAGMLEGLKRIYSQLKYREIEPNESLFKAIIDAYRSAKRHD 988



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/239 (20%), Positives = 100/239 (41%), Gaps = 33/239 (13%)

Query: 221  DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
            D ++++T++   K   + DEAI+  + M ++GL+ D  +++ ++  YA +G++     L 
Sbjct: 762  DGVSFATMMYLYKNLGMLDEAIDVADEMKQSGLLRDCASFNKVMACYATNGQLSACGELL 821

Query: 281  ERGVASGWKPDPIAFSVLGKMFG------------ESGDYDGIRYVLQEM-----KSLGV 323
               ++    PD   F V+  +              ES   +G  Y  Q +      ++G+
Sbjct: 822  HEMISRRILPDTGTFKVMFTVLKKGGLPTEAVTQLESSYQEGKPYARQAVITSVFSTVGL 881

Query: 324  QP----------------NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
                              +   YN  + A G +G    A  +F +M + GL PD  T   
Sbjct: 882  HAFALESCETFLNAEVDLDSSFYNVAIYAYGASGSIDKALKMFMKMQDEGLEPDLVTYIN 941

Query: 368  LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
            L   YGKA   +    ++ +++  +   +  L+  +++        + AE + ++MK +
Sbjct: 942  LAGCYGKAGMLEGLKRIYSQLKYREIEPNESLFKAIIDAYRSAKRHDLAELVSQEMKFA 1000



 Score = 46.6 bits (109), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 49/103 (47%)

Query: 217 EIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV 276
           E++LD+  Y+  I         D+A++ F +M   GL PD VTY  +   Y K+G +E +
Sbjct: 896 EVDLDSSFYNVAIYAYGASGSIDKALKMFMKMQDEGLEPDLVTYINLAGCYGKAGMLEGL 955

Query: 277 LSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMK 319
             +Y +      +P+   F  +   +  +  +D    V QEMK
Sbjct: 956 KRIYSQLKYREIEPNESLFKAIIDAYRSAKRHDLAELVSQEMK 998


>gi|449446121|ref|XP_004140820.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/322 (27%), Positives = 154/322 (47%), Gaps = 3/322 (0%)

Query: 183 FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
           FP +  +YN+ +         +  + + NE+    +    ++++T+I    +    DE  
Sbjct: 219 FPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGF 278

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
              + M +  + PD  TYS ++    K G+++    L++     G +P+ I F+ L    
Sbjct: 279 RLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQ 338

Query: 303 GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
             S   D       +M ++GV+P+LV+YNTLL  + K G    AR L DEM   G+ PD+
Sbjct: 339 CRSRRIDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPDK 398

Query: 363 KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN-MCADIGLVEEAERLFE 421
            T T LI  Y K    + A+E+ + M E    +D + +  L++  C D G V +AER   
Sbjct: 399 ITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRD-GRVRDAERTLR 457

Query: 422 DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
           +M +    KPD+ +YT +++ Y   GNV    +L +EM   G    V+    L+  L K 
Sbjct: 458 EM-VEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQ 516

Query: 482 RRIDDLVRVFGVSIDRGVKPDD 503
            ++ +   +    ++ GV PDD
Sbjct: 517 GQMKNANMLLEAMLNLGVTPDD 538



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 136/260 (52%), Gaps = 1/260 (0%)

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
           ++  + + G  P    Y+ +++ + K G + +   ++      G +P  ++F+ L     
Sbjct: 210 FYSEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLC 269

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
           +S + D    + + M+   + P++  Y+ L+  + K G+  +A  LFDEM + GL P+  
Sbjct: 270 KSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGI 329

Query: 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
           T TALI    ++R    A+  + +M       D ++YNTLLN    +G V +A +L ++M
Sbjct: 330 TFTALIDGQCRSRRIDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEM 389

Query: 424 KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483
           ++    KPD  +YT +++ Y   G++++A+E+ + M+E GV ++ +  T LI    +  R
Sbjct: 390 RMVGM-KPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGR 448

Query: 484 IDDLVRVFGVSIDRGVKPDD 503
           + D  R     ++ G+KPDD
Sbjct: 449 VRDAERTLREMVEAGMKPDD 468



 Score =  113 bits (282), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 83/322 (25%), Positives = 144/322 (44%), Gaps = 37/322 (11%)

Query: 172 FFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITC 231
             FN I+ + L P  T+ +N  +  L   R      +L   M  N I  D  TYS +I  
Sbjct: 244 LIFNEIRKRGLRP-TTVSFNTLINGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHG 302

Query: 232 AKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291
             +    D A + F+ M + GL P+ +T++A++D   +S +++  ++ Y + +  G KPD
Sbjct: 303 LCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQCRSRRIDSAMNTYHQMLTMGVKPD 362

Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG--------KP 343
            + ++ L     + GD +  R ++ EM+ +G++P+ + Y TL++   K G        + 
Sbjct: 363 LVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPDKITYTTLIDGYCKEGDLESAMEIRK 422

Query: 344 GL---------------------------ARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
           G+                           A     EMVE+G+ PD+ T T +I  Y K  
Sbjct: 423 GMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKG 482

Query: 377 WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY 436
             K   +L + M+ N      I YN L+N     G ++ A  L E M L+    PD+ +Y
Sbjct: 483 NVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAM-LNLGVTPDDITY 541

Query: 437 TAMLNIYGSGGNVDNAIELFEE 458
             +L  +   G  ++ ++L  E
Sbjct: 542 NILLEGHCKNGKAEDLLKLRNE 563


>gi|410110073|gb|AFV61116.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
           virgata]
          Length = 424

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/295 (30%), Positives = 151/295 (51%), Gaps = 7/295 (2%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L +EM    +  D  TYST+IT   +  LFD A+ W ++M +  +  D V YS ++++  
Sbjct: 3   LFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSR 62

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           K     + +S++ R   SG+ PD +A++ +  +FG++  +   R ++ EM++ GV PN  
Sbjct: 63  KLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTA 122

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            Y+TLL    +  K   A S+F EM E     D  T   +I +YG+   AK+A +L+  M
Sbjct: 123 SYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM 182

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
           R+     + + YNTLL +  D  L  EA  LF  M+  +  + +  +Y +M+ IYG    
Sbjct: 183 RKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQ-NVVTYNSMMMIYGKTLE 241

Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF------GVSIDR 497
            + A  L +EM   G+  N +  + +I   GK  ++D    +F      GV ID+
Sbjct: 242 HEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQ 296



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/345 (22%), Positives = 161/345 (46%), Gaps = 6/345 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K     P + + YN  +      + F+    L +EM +  +  +  +YS
Sbjct: 67  YSKAISIFSRLKRSGFTP-DLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYS 125

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY + G  +E   L+      
Sbjct: 126 TLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 185

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   +  N+V YN+++   GK  +   A
Sbjct: 186 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEKA 245

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R +   +D +LY T+   
Sbjct: 246 NNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMXVA 305

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K      PDN      ++I    G ++ A  +F +  + G   
Sbjct: 306 YERAGLVAHAKRLLHELK-----SPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVK 360

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
           ++     +I    K ++  +++ VF      G  PD  +   +L+
Sbjct: 361 DITVFERMIHLFSKYKKYANVIEVFDKMRGLGYFPDSNVIALVLN 405



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 128/268 (47%), Gaps = 1/268 (0%)

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
           F+ M +  L PD  TYS ++  + K G  +  LS  ++        D + +S L ++  +
Sbjct: 4   FDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRK 63

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
             DY     +   +K  G  P+LV YN ++   GKA     ARSL  EM  +G+ P+  +
Sbjct: 64  LCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTAS 123

Query: 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
            + L+ +Y + +   +AL ++  MRE K  +D    N ++++   +G+ +EA++LF  M+
Sbjct: 124 YSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR 183

Query: 425 LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484
                +P+  SY  +L +YG       AI LF  M    +  NV+    ++   GK    
Sbjct: 184 KMG-IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEH 242

Query: 485 DDLVRVFGVSIDRGVKPDDRLCGCLLSV 512
           +    +     +RG++P+      ++S+
Sbjct: 243 EKANNLIQEMQNRGIEPNSITYSTIISI 270



 Score = 79.7 bits (195), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 117/242 (48%), Gaps = 5/242 (2%)

Query: 218 IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL 277
           IE + ++Y+T++       LF EAI  F  M +  ++ + VTY++++ +Y K+ + E+  
Sbjct: 187 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEKAN 246

Query: 278 SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
           +L +     G +P+ I +S +  ++G+ G  D    + Q+++S GV+ + V+Y T+  A 
Sbjct: 247 NLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMXVAY 306

Query: 338 GKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDF 397
            +AG    A+ L  E+     +PD       I I   A   ++A  ++ +  +     D 
Sbjct: 307 ERAGLVAHAKRLLHELK----SPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDI 362

Query: 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE 457
            ++  ++++ +          +F+ M+   Y  PD+     +LN YG     D A  ++ 
Sbjct: 363 TVFERMIHLFSKYKKYANVIEVFDKMRGLGYF-PDSNVIALVLNAYGKLHEFDKANGVYM 421

Query: 458 EM 459
           EM
Sbjct: 422 EM 423



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/220 (22%), Positives = 97/220 (44%), Gaps = 1/220 (0%)

Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYG 373
           +  EM+   + P+   Y+TL+   GK G    A S   +M +  +  D    + LI++  
Sbjct: 3   LFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSR 62

Query: 374 KARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDN 433
           K      A+ ++ R++ + +  D + YN ++N+     L  EA  L  +M+ +    P+ 
Sbjct: 63  KLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAG-VMPNT 121

Query: 434 YSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGV 493
            SY+ +L +Y        A+ +F EM E+   +++  C  +I   G+     +  ++F  
Sbjct: 122 ASYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWG 181

Query: 494 SIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN 533
               G++P+      LL V    E   +   +   +Q+ N
Sbjct: 182 MRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKN 221



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/228 (21%), Positives = 98/228 (42%), Gaps = 9/228 (3%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGR--QFQLI 206
           P+  +    L +    + + ++   F  ++ +N+     + YN  M  + +G+  + +  
Sbjct: 189 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQ-NVVTYNSMM--MIYGKTLEHEKA 245

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
             L  EM +  IE ++ITYSTII+   +    D A   F+++  +G+  D+V Y  +   
Sbjct: 246 NNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMXVA 305

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
           Y ++G V       +R +     PD I       +   +G  +   YV ++    G   +
Sbjct: 306 YERAGLVAHA----KRLLHELKSPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKD 361

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK 374
           + V+  ++    K  K      +FD+M   G  PD   +  ++  YGK
Sbjct: 362 ITVFERMIHLFSKYKKYANVIEVFDKMRGLGYFPDSNVIALVLNAYGK 409


>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
 gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
          Length = 695

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 164/326 (50%), Gaps = 2/326 (0%)

Query: 177 IKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCN 236
           ++ + +FP + + +NV + +       +    L + MVS  ++   +TY++++    R  
Sbjct: 121 MEKRCVFP-DVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSG 179

Query: 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS 296
           ++D+A E F+ M   G+ PD  +++ ++  + + G++EE L +Y+     G KPD ++FS
Sbjct: 180 MWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFS 239

Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356
            L  +F   G  D     L+EM+  G+ P+ V+Y  ++    +AG    A  + DEMV  
Sbjct: 240 CLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGC 299

Query: 357 GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEA 416
           G  PD  T   L+    K R   DA  L   MRE   P D   + TL++     G +++A
Sbjct: 300 GCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKA 359

Query: 417 ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
            +LF+ M L+   +PD  +Y  +++     G++D A +L+++M    +  N +  + LI 
Sbjct: 360 LQLFDTM-LNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILID 418

Query: 477 CLGKARRIDDLVRVFGVSIDRGVKPD 502
              +  +++D        I++G+ P+
Sbjct: 419 SHCEKGQVEDAFGFLDEMINKGILPN 444



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/278 (28%), Positives = 138/278 (49%), Gaps = 1/278 (0%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + YN  +  L   R+    E L NEM    +  D  T++T+I         D+A++ F
Sbjct: 304 DVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLF 363

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           + M    L PD VTY+ ++D   + G +++   L++   +    P+ + +S+L     E 
Sbjct: 364 DTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEK 423

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G  +     L EM + G+ PN++ YN++++   ++G     +    +M+ + ++PD  T 
Sbjct: 424 GQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITY 483

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
             LI  Y K     DA +L   M + K   D + YN L+N  +  G V+EA  +FE M  
Sbjct: 484 NTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKM-C 542

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           +   +PD Y+Y +M+N + + GN   A +L +EM + G
Sbjct: 543 AKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRG 580



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 84/358 (23%), Positives = 160/358 (44%), Gaps = 13/358 (3%)

Query: 115 YSYNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTRENALLILNSLKFWQK----- 169
           +   P VR   +           EEA L+   E+ H+  + + +     +  + +     
Sbjct: 194 FGVAPDVRSFTILIGGFCRVGEIEEA-LKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMD 252

Query: 170 -SYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
            +  +   ++   L P   I+  V     R G     + ++ +EMV      D +TY+T+
Sbjct: 253 HAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDAL-RVRDEMVGCGCLPDVVTYNTL 311

Query: 229 IT--CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           +   C +R  L  E +     M + G+ PD  T++ ++  Y   GK+++ L L++  +  
Sbjct: 312 LNGLCKERRLLDAEGL--LNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQ 369

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
             +PD + ++ L       GD D    +  +M S  + PN V Y+ L+++  + G+   A
Sbjct: 370 RLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDA 429

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
               DEM+  G+ P+  T  ++IK Y ++       +  ++M  NK   D I YNTL++ 
Sbjct: 430 FGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHG 489

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
                 + +A +L   M+  +  +PD  +Y  ++N +   GNV  A  +FE+M   G+
Sbjct: 490 YIKEDKMHDAFKLLNMME-KEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGI 546



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 130/259 (50%), Gaps = 3/259 (1%)

Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS 261
           +F  ++ + +EM    +  D +T++ ++    R    + A+   + M   GL P  VTY+
Sbjct: 110 EFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYN 169

Query: 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
           ++L    +SG  ++   +++     G  PD  +F++L   F   G+ +    + +EM+  
Sbjct: 170 SVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHR 229

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
           G++P+LV ++ L+    + GK   A +   EM   GL PD    T +I  + +A    DA
Sbjct: 230 GIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDA 289

Query: 382 LELWERMRENKWPMDFILYNTLLN-MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
           L + + M       D + YNTLLN +C +  L+ +AE L  +M+      PD  ++T ++
Sbjct: 290 LRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLL-DAEGLLNEMR-ERGVPPDLCTFTTLI 347

Query: 441 NIYGSGGNVDNAIELFEEM 459
           + Y   G +D A++LF+ M
Sbjct: 348 HGYCIEGKLDKALQLFDTM 366



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 130/281 (46%), Gaps = 3/281 (1%)

Query: 224 TYSTIITCAKRCNL--FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYE 281
           TY+  I     C    FD+       M K  + PD VT++ ++D   ++G  E  ++L +
Sbjct: 95  TYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVD 154

Query: 282 RGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG 341
             V+ G KP  + ++ + K    SG +D    V +EM   GV P++  +  L+    + G
Sbjct: 155 SMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVG 214

Query: 342 KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYN 401
           +   A  ++ EM   G+ PD  + + LI ++ +      A+     MR      D ++Y 
Sbjct: 215 EIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYT 274

Query: 402 TLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461
            ++      GL+ +A R+ ++M +   C PD  +Y  +LN       + +A  L  EM E
Sbjct: 275 MVIGGFCRAGLMSDALRVRDEM-VGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRE 333

Query: 462 LGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            GV  ++   T LI       ++D  +++F   +++ ++PD
Sbjct: 334 RGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPD 374



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 105/220 (47%), Gaps = 1/220 (0%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           K+   F+ + +Q L P + + YN  +  +           L ++M S EI  +++TYS +
Sbjct: 358 KALQLFDTMLNQRLRP-DIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSIL 416

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
           I         ++A  + + M   G++P+ +TY++I+  Y +SG V +     ++ + +  
Sbjct: 417 IDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKV 476

Query: 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348
            PD I ++ L   + +         +L  M+   VQP++V YN L+      G    A  
Sbjct: 477 SPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGW 536

Query: 349 LFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
           +F++M   G+ PD  T  ++I  +  A  +K+A +L + M
Sbjct: 537 IFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEM 576



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/181 (22%), Positives = 86/181 (47%), Gaps = 1/181 (0%)

Query: 177 IKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCN 236
           + S+ +FP   + Y++ + S     Q +      +EM++  I  + +TY++II    R  
Sbjct: 401 MHSREIFP-NHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSG 459

Query: 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS 296
              +  ++ ++M    + PD +TY+ ++  Y K  K+ +   L         +PD + ++
Sbjct: 460 NVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYN 519

Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356
           +L   F   G+     ++ ++M + G++P+   Y +++     AG    A  L DEM++ 
Sbjct: 520 MLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQR 579

Query: 357 G 357
           G
Sbjct: 580 G 580



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 79/176 (44%), Gaps = 1/176 (0%)

Query: 339 KAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFI 398
           +AG P LA   +  +  S    +  TL  ++  Y KA        +   M +     D +
Sbjct: 72  RAGWPHLAADAYRLVFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVV 131

Query: 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458
            +N +++     G  E A  L + M +S   KP   +Y ++L      G  D A E+F+E
Sbjct: 132 THNVMVDARFRAGDAEAAMALVDSM-VSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKE 190

Query: 459 MSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVS 514
           M + GVA +V   T LI    +   I++ ++++     RG+KPD     CL+ + +
Sbjct: 191 MDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFA 246


>gi|410110067|gb|AFV61113.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
           herrerae]
          Length = 433

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/300 (30%), Positives = 152/300 (50%), Gaps = 1/300 (0%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
           +EM    +  D  TYST+IT   +  LFD A+ W ++M +  +  D V YS ++++  K 
Sbjct: 1   DEMRERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKL 60

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
               + +S++ R   SG+ PD +A++ +  +FG++  +   R ++ EMK+ GV PN   Y
Sbjct: 61  CDYSKAISIFSRLKRSGFMPDLVAYNAMINVFGKAKLFREARALISEMKTAGVMPNTASY 120

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
           +TLL    +  K   A S+F EM E     D  T   +I +YG+   AK+A +L+  MR+
Sbjct: 121 STLLTMYVENKKFIEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK 180

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
                + + YNTLL +  D  L  EA  LF  M+  +  + +  +Y +M+ IYG     +
Sbjct: 181 MGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKN-IEQNVVTYNSMMMIYGKTLEHE 239

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
            A  L +EM   G+  N +  + +I   GK  ++D    +F      GV+ D  L   ++
Sbjct: 240 KANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMI 299



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 163/345 (47%), Gaps = 6/345 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K     P + + YN  +      + F+    L +EM +  +  +  +YS
Sbjct: 63  YSKAISIFSRLKRSGFMP-DLVAYNAMINVFGKAKLFREARALISEMKTAGVMPNTASYS 121

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY + G  +E   L+      
Sbjct: 122 TLLTMYVENKKFIEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 181

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   ++ N+V YN+++   GK  +   A
Sbjct: 182 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKA 241

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R +   +D +LY T++  
Sbjct: 242 NNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVA 301

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K      PDN      ++I    G ++ A  +F +  + G   
Sbjct: 302 YERAGLVAHAKRLLHELK-----SPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVK 356

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
           ++     +I    K ++  ++V VF      G  PD  +   +L+
Sbjct: 357 DITVFERMIHLFSKYKKYANVVEVFDKMRGLGYFPDSNVIALVLN 401



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 127/267 (47%), Gaps = 1/267 (0%)

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           + M +  L PD  TYS ++  + K G  +  LS  ++        D + +S L ++  + 
Sbjct: 1   DEMRERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKL 60

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
            DY     +   +K  G  P+LV YN ++   GKA     AR+L  EM  +G+ P+  + 
Sbjct: 61  CDYSKAISIFSRLKRSGFMPDLVAYNAMINVFGKAKLFREARALISEMKTAGVMPNTASY 120

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
           + L+ +Y + +   +AL ++  MRE K  +D    N ++++   +G+ +EA++LF  M+ 
Sbjct: 121 STLLTMYVENKKFIEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK 180

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
               +P+  SY  +L +YG       AI LF  M    +  NV+    ++   GK    +
Sbjct: 181 MG-IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE 239

Query: 486 DLVRVFGVSIDRGVKPDDRLCGCLLSV 512
               +     +RG++P+      ++S+
Sbjct: 240 KANNLIQEMQNRGIEPNSITYSTIISI 266



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/277 (20%), Positives = 117/277 (42%), Gaps = 67/277 (24%)

Query: 218 IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL 277
           IE + ++Y+T++       LF EAI  F  M +  +  + VTY++++ +Y K+ + E+  
Sbjct: 183 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKAN 242

Query: 278 SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
           +L +     G +P+ I +S +  ++G+ G  D    + Q+++S GV+ + V+Y T++ A 
Sbjct: 243 NLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAY 302

Query: 338 GKAGKPGLARSLFDEM-------------------------------VESGLTPDEKTLT 366
            +AG    A+ L  E+                               +++G   D     
Sbjct: 303 ERAGLVAHAKRLLHELKSPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFE 362

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
            +I ++ K +   + +E++++MR                    +G               
Sbjct: 363 RMIHLFSKYKKYANVVEVFDKMR-------------------GLGYF------------- 390

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
               PD+     +LN YG    +D A +++ EM E+G
Sbjct: 391 ----PDSNVIALVLNAYGKLHELDKANDVYMEMQEVG 423



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 96/217 (44%), Gaps = 1/217 (0%)

Query: 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
           EM+   + P+   Y+TL+   GK G    A S   +M +  +  D    + LI++  K  
Sbjct: 2   EMRERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLC 61

Query: 377 WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY 436
               A+ ++ R++ + +  D + YN ++N+     L  EA  L  +MK +    P+  SY
Sbjct: 62  DYSKAISIFSRLKRSGFMPDLVAYNAMINVFGKAKLFREARALISEMKTAG-VMPNTASY 120

Query: 437 TAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496
           + +L +Y        A+ +F EM E+   +++  C  +I   G+     +  ++F     
Sbjct: 121 STLLTMYVENKKFIEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK 180

Query: 497 RGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN 533
            G++P+      LL V    E   +   +   +Q+ N
Sbjct: 181 MGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKN 217



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 53/244 (21%), Positives = 106/244 (43%), Gaps = 9/244 (3%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGR--QFQLI 206
           P+  +    L +    + + ++   F  ++ +N+     + YN  M  + +G+  + +  
Sbjct: 185 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNI-EQNVVTYNSMM--MIYGKTLEHEKA 241

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
             L  EM +  IE ++ITYSTII+   +    D A   F+++  +G+  D+V Y  ++  
Sbjct: 242 NNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVA 301

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
           Y ++G V       +R +     PD I       +   +G  +   YV ++    G   +
Sbjct: 302 YERAGLVAHA----KRLLHELKSPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKD 357

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
           + V+  ++    K  K      +FD+M   G  PD   +  ++  YGK      A +++ 
Sbjct: 358 ITVFERMIHLFSKYKKYANVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHELDKANDVYM 417

Query: 387 RMRE 390
            M+E
Sbjct: 418 EMQE 421


>gi|326525088|dbj|BAK07814.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 539

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/358 (26%), Positives = 170/358 (47%), Gaps = 12/358 (3%)

Query: 164 LKFWQKSYFFFNWIKSQNLFPMETI--FYNVTMKSLRFGRQFQLIEQLANEMVSNEIELD 221
           + F +   FF + + S    P +++   Y   +  L     F L   L +EM    I + 
Sbjct: 117 VPFPEALTFFHHVVPS---LPADSLPALYAAMIDLLAKHHHFPLARHLLDEMRERSIPVS 173

Query: 222 NITYSTIITCAKRCNLFDEAIEWFERMYKTGL-MPDEVTYSAILDVYAKSGKVEEVLSLY 280
           +     II    R  +  EA E F RM + G  +PD    +++L   +K     E  +L+
Sbjct: 174 SQVILAIIRRYVRAGMSPEASELFRRMEEYGAGVPDPAVLASLLGALSKKRLAGEAQALF 233

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
           +    S + PD + ++ L   +  +G  D    V  EM+  G+ PN+  Y ++++AM +A
Sbjct: 234 D-SYKSVFPPDVVLYTTLVHAWCRAGCLDKAEQVFAEMQQAGIMPNVYTYTSVIDAMYRA 292

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G+   A+ L  +M+E+G  P+  T  A+++ + KA  ++  L++  +MR+     D I Y
Sbjct: 293 GQVPRAQELLCQMMETGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMRQLGCDPDIITY 352

Query: 401 NTLLNMCADIGL--VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458
           N L+      G   ++ A ++   M ++  C PD +++  ML +    GNV+ A  L+E 
Sbjct: 353 NFLMETHCGKGQSNLDAAMKVLAKM-IAKGCIPDCHTFNPMLKLVLGTGNVEAARRLYER 411

Query: 459 MSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLC 516
           M EL    NV+    L++   K + +D ++R+      +GV+P+    G L+   S C
Sbjct: 412 MQELQCKPNVVTYNLLMKLFNKEKSMDMVLRIKKDMDAQGVEPNVNTYGALIE--SFC 467



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 106/214 (49%), Gaps = 5/214 (2%)

Query: 184 PMETIFYNVTMKS-LRFGRQFQLIEQLANEMVSNEIELDNITYSTII--TCAKRCNLFDE 240
           P  T  +N  M++ ++ GR  Q++ Q+ N+M     + D ITY+ ++   C K  +  D 
Sbjct: 311 PPNTATFNAIMRAHVKAGRSEQVL-QVHNQMRQLGCDPDIITYNFLMETHCGKGQSNLDA 369

Query: 241 AIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGK 300
           A++   +M   G +PD  T++ +L +   +G VE    LYER      KP+ + +++L K
Sbjct: 370 AMKVLAKMIAKGCIPDCHTFNPMLKLVLGTGNVEAARRLYERMQELQCKPNVVTYNLLMK 429

Query: 301 MFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMV-ESGLT 359
           +F +    D +  + ++M + GV+PN+  Y  L+E+    G    A +   EMV E  L 
Sbjct: 430 LFNKEKSMDMVLRIKKDMDAQGVEPNVNTYGALIESFCGRGNWRRAHATLREMVEEKSLK 489

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKW 393
           P +     ++ +  KA   +   EL E M +  +
Sbjct: 490 PTKPVYDMVLMLLRKAGQLRKHEELVELMADRGF 523



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 110/239 (46%), Gaps = 6/239 (2%)

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
            +Y  +++ + K     LAR L DEM E  +    + + A+I+ Y +A  + +A EL+ R
Sbjct: 140 ALYAAMIDLLAKHHHFPLARHLLDEMRERSIPVSSQVILAIIRRYVRAGMSPEASELFRR 199

Query: 388 MRENKWPM-DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
           M E    + D  +  +LL   +   L  EA+ LF+  K      PD   YT +++ +   
Sbjct: 200 MEEYGAGVPDPAVLASLLGALSKKRLAGEAQALFDSYK--SVFPPDVVLYTTLVHAWCRA 257

Query: 447 GNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLC 506
           G +D A ++F EM + G+  NV   T +I  + +A ++     +    ++ G  P+    
Sbjct: 258 GCLDKAEQVFAEMQQAGIMPNVYTYTSVIDAMYRAGQVPRAQELLCQMMETGCPPNTATF 317

Query: 507 GCLLSVVSLCETSEDVGKVITCLQQ--ANPKLVAFLNLIEDN-STGFENIKEEFRNVIK 562
             ++        SE V +V   ++Q   +P ++ +  L+E +   G  N+    + + K
Sbjct: 318 NAIMRAHVKAGRSEQVLQVHNQMRQLGCDPDIITYNFLMETHCGKGQSNLDAAMKVLAK 376


>gi|449499490|ref|XP_004160831.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 99/381 (25%), Positives = 178/381 (46%), Gaps = 25/381 (6%)

Query: 188 IFYNVTMKSLRFGRQ------FQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEA 241
           + YN+ + S+  G +      F+L E+  NEM+S    L+ +   +   C      F++A
Sbjct: 414 VVYNILIGSICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKA 473

Query: 242 IEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKM 301
            +    M   G +PD  TYS ++     + +VE    L++    +G  PD   +++L   
Sbjct: 474 YKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDC 533

Query: 302 FGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD 361
           F ++G        L EM   G +P +V Y TL+ A  KA K  +A  LF+ M+  G  P+
Sbjct: 534 FSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPN 593

Query: 362 EKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI----------- 410
             T TALI  Y K+   + A +++ RMR +    D  +Y  + N  A+            
Sbjct: 594 VITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVD 653

Query: 411 GL-----VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
           GL     V++A  L E M   D C+P+   Y A+++ +     +D A E+F +M E G  
Sbjct: 654 GLCKAHKVKDARDLLETM-FVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVERGYN 712

Query: 466 INVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKV 525
            NV   + LI  L K +R+D +++V    ++    P+  +   ++  +S    +++  K+
Sbjct: 713 PNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKL 772

Query: 526 ITCLQQ--ANPKLVAFLNLIE 544
           +  +++    P +V +  +I+
Sbjct: 773 MLMMEEKGCKPNVVTYTAMID 793



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 136/314 (43%), Gaps = 34/314 (10%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           +TY  ++    + +   +A +  E M+  G  P+ + Y A++D + K+ K++E   ++ +
Sbjct: 646 VTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHK 705

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
            V  G+ P+   +S L     +    D +  VL +M      PN+V+Y  +++ + K  K
Sbjct: 706 MVERGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAK 765

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
              A  L   M E G  P+  T TA+I  +GKA      LEL+  M       +F+ Y  
Sbjct: 766 TDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTV 825

Query: 403 LLNMCADIGLVEEAERLFEDMK-------LSDYCK------------------------- 430
           L+N C   G ++EA  L E+MK       +S YCK                         
Sbjct: 826 LINHCCATGHLDEAYALLEEMKQTYWPKHVSSYCKVIEGYKREFILSLGLLEEVEKNGSA 885

Query: 431 PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG--CTCLIQCLGKARRIDDLV 488
           P    Y  +++ +   G ++ A+EL +E+    +++       T LI     A +ID   
Sbjct: 886 PTILLYKVLIDNFVKAGRLEVALELHKEVISASMSMTAKKNLYTSLIYSFSYASKIDHAF 945

Query: 489 RVFGVSIDRGVKPD 502
            +F   I  GV PD
Sbjct: 946 ELFYDMIRDGVIPD 959



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/305 (22%), Positives = 134/305 (43%), Gaps = 3/305 (0%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
           TI Y+  +       +    +++ ++MV      +  TYS++I    +    D  ++   
Sbjct: 680 TIVYDALIDGFCKAAKLDEAQEVFHKMVERGYNPNVYTYSSLIDRLFKDKRLDLVLKVLS 739

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
           +M +    P+ V Y+ ++D  +K  K +E   L       G KP+ + ++ +   FG++G
Sbjct: 740 KMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAG 799

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
             D    + +EM S G  PN V Y  L+      G    A +L +EM ++       +  
Sbjct: 800 KVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEMKQTYWPKHVSSYC 859

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED-MKL 425
            +I+  G  R    +L L E + +N      +LY  L++     G +E A  L ++ +  
Sbjct: 860 KVIE--GYKREFILSLGLLEEVEKNGSAPTILLYKVLIDNFVKAGRLEVALELHKEVISA 917

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
           S         YT+++  +     +D+A ELF +M   GV  ++     L+  L + RR +
Sbjct: 918 SMSMTAKKNLYTSLIYSFSYASKIDHAFELFYDMIRDGVIPDLGTFVHLLMGLIRVRRWE 977

Query: 486 DLVRV 490
           + +++
Sbjct: 978 EALQL 982



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 85/413 (20%), Positives = 153/413 (37%), Gaps = 87/413 (21%)

Query: 160 ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIE 219
           IL+ LK  +    FF W   Q  +      Y   +     G   ++ E+   E+  ++ E
Sbjct: 144 ILSFLKSPELCVKFFLWAGRQIGYDHTPAVYIALLDVFERGSYDRVPEEFLREIRGDDKE 203

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY------------ 267
           +     + +I    R  L++ A+E   R+   G  P  +TY+A++ V+            
Sbjct: 204 VLGKLLNVLIRKCCRNGLWNVALEELGRLKDFGYKPTRMTYNALVQVFLRADKLDTAQLV 263

Query: 268 -----------------------AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
                                   K GK  E LSL E+     + P+ I ++ +     E
Sbjct: 264 HREMSELGLSMDEFTLGFFAQALCKVGKWREALSLIEK---EDFVPNTILYNKMISGLCE 320

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
           +  ++     L  M+S    PN+  Y  LL       + G  + +   M+  G  P    
Sbjct: 321 ASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSYTI 380

Query: 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL-NMCA--------------- 408
             +L+  Y K+     A +L ++M + +    +++YN L+ ++C+               
Sbjct: 381 FNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSGGELPGPVTFELAEK 440

Query: 409 -------------------------DIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIY 443
                                      G  E+A ++  +M  + +  PD  +Y+ ++   
Sbjct: 441 AYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGNGFV-PDTSTYSEVIGFL 499

Query: 444 GSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI-------DDLVR 489
            +   V+NA  LF+EM   GV  +V   T LI C  KA  I       D++VR
Sbjct: 500 CNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVR 552


>gi|449446442|ref|XP_004140980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 99/381 (25%), Positives = 178/381 (46%), Gaps = 25/381 (6%)

Query: 188 IFYNVTMKSLRFGRQ------FQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEA 241
           + YN+ + S+  G +      F+L E+  NEM+S    L+ +   +   C      F++A
Sbjct: 414 VVYNILIGSICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKA 473

Query: 242 IEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKM 301
            +    M   G +PD  TYS ++     + +VE    L++    +G  PD   +++L   
Sbjct: 474 YKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDC 533

Query: 302 FGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD 361
           F ++G        L EM   G +P +V Y TL+ A  KA K  +A  LF+ M+  G  P+
Sbjct: 534 FSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPN 593

Query: 362 EKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI----------- 410
             T TALI  Y K+   + A +++ RMR +    D  +Y  + N  A+            
Sbjct: 594 VITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVD 653

Query: 411 GL-----VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
           GL     V++A  L E M   D C+P+   Y A+++ +     +D A E+F +M E G  
Sbjct: 654 GLCKAHKVKDARDLLETM-FVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVEHGYN 712

Query: 466 INVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKV 525
            NV   + LI  L K +R+D +++V    ++    P+  +   ++  +S    +++  K+
Sbjct: 713 PNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKL 772

Query: 526 ITCLQQ--ANPKLVAFLNLIE 544
           +  +++    P +V +  +I+
Sbjct: 773 MLMMEEKGCKPNVVTYTAMID 793



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 136/314 (43%), Gaps = 34/314 (10%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           +TY  ++    + +   +A +  E M+  G  P+ + Y A++D + K+ K++E   ++ +
Sbjct: 646 VTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHK 705

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
            V  G+ P+   +S L     +    D +  VL +M      PN+V+Y  +++ + K  K
Sbjct: 706 MVEHGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAK 765

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
              A  L   M E G  P+  T TA+I  +GKA      LEL+  M       +F+ Y  
Sbjct: 766 TDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTV 825

Query: 403 LLNMCADIGLVEEAERLFEDMK-------LSDYCK------------------------- 430
           L+N C   G ++EA  L E+MK       +S YCK                         
Sbjct: 826 LINHCCATGHLDEAYALLEEMKQTYWPKHVSSYCKVIEGYKREFILSLGLLEEVEKNGSA 885

Query: 431 PDNYSYTAMLNIYGSGGNVDNAIELFEEM--SELGVAINVMGCTCLIQCLGKARRIDDLV 488
           P    Y  +++ +   G ++ A+EL +E+  + + +A      T LI     A +I    
Sbjct: 886 PIILLYKVLIDNFVKAGRLEVALELHKEVISASMSMAAKKNLYTSLIYSFSYASKIGHAF 945

Query: 489 RVFGVSIDRGVKPD 502
            +F   I  GV PD
Sbjct: 946 ELFYDMIRDGVIPD 959



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 127/291 (43%), Gaps = 17/291 (5%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
            + Y   + +    ++  +  +L   M++     + ITY+ +I    +    ++A + + 
Sbjct: 559 VVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKACQIYA 618

Query: 247 RMYKTGLMPDE----------------VTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
           RM     +PD                 VTY A++D   K+ KV++   L E     G +P
Sbjct: 619 RMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEP 678

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
           + I +  L   F ++   D  + V  +M   G  PN+  Y++L++ + K  +  L   + 
Sbjct: 679 NTIVYDALIDGFCKAAKLDEAQEVFHKMVEHGYNPNVYTYSSLIDRLFKDKRLDLVLKVL 738

Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
            +M+E+   P+    T +I    K     +A +L   M E     + + Y  +++     
Sbjct: 739 SKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKA 798

Query: 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461
           G V++   LF +M  S  C P+  +YT ++N   + G++D A  L EEM +
Sbjct: 799 GKVDKCLELFREMG-SKGCAPNFVTYTVLINHCCATGHLDEAYALLEEMKQ 848



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/305 (22%), Positives = 134/305 (43%), Gaps = 3/305 (0%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
           TI Y+  +       +    +++ ++MV +    +  TYS++I    +    D  ++   
Sbjct: 680 TIVYDALIDGFCKAAKLDEAQEVFHKMVEHGYNPNVYTYSSLIDRLFKDKRLDLVLKVLS 739

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
           +M +    P+ V Y+ ++D  +K  K +E   L       G KP+ + ++ +   FG++G
Sbjct: 740 KMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAG 799

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
             D    + +EM S G  PN V Y  L+      G    A +L +EM ++       +  
Sbjct: 800 KVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEMKQTYWPKHVSSYC 859

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED-MKL 425
            +I+  G  R    +L L E + +N      +LY  L++     G +E A  L ++ +  
Sbjct: 860 KVIE--GYKREFILSLGLLEEVEKNGSAPIILLYKVLIDNFVKAGRLEVALELHKEVISA 917

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
           S         YT+++  +     + +A ELF +M   GV  ++     L+  L + RR +
Sbjct: 918 SMSMAAKKNLYTSLIYSFSYASKIGHAFELFYDMIRDGVIPDLGTFVHLLMGLIRVRRWE 977

Query: 486 DLVRV 490
           + +++
Sbjct: 978 EALQL 982



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 85/413 (20%), Positives = 153/413 (37%), Gaps = 87/413 (21%)

Query: 160 ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIE 219
           IL+ LK  +    FF W   Q  +      Y   +     G   ++ E+   E+  ++ E
Sbjct: 144 ILSFLKSPELCVKFFLWAGRQIGYDHTPAVYIALLDVFERGSYDRVPEEFLREIRGDDKE 203

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY------------ 267
           +     + +I    R  L++ A+E   R+   G  P  +TY+A++ V+            
Sbjct: 204 VLGKLLNVLIRKCCRNGLWNVALEELGRLKDFGYKPTRMTYNALVQVFLRADKLDTAQLV 263

Query: 268 -----------------------AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
                                   K GK  E LSL E+     + P+ I ++ +     E
Sbjct: 264 HREMSELGLSMDEFTLGFFAQALCKVGKWREALSLIEK---EDFVPNTILYNKMISGLCE 320

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
           +  ++     L  M+S    PN+  Y  LL       + G  + +   M+  G  P    
Sbjct: 321 ASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSYTI 380

Query: 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL-NMCA--------------- 408
             +L+  Y K+     A +L ++M + +    +++YN L+ ++C+               
Sbjct: 381 FNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSGGELPGPVTFELAEK 440

Query: 409 -------------------------DIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIY 443
                                      G  E+A ++  +M  + +  PD  +Y+ ++   
Sbjct: 441 AYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGNGFV-PDTSTYSEVIGFL 499

Query: 444 GSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI-------DDLVR 489
            +   V+NA  LF+EM   GV  +V   T LI C  KA  I       D++VR
Sbjct: 500 CNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVR 552


>gi|359484268|ref|XP_002278014.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Vitis vinifera]
          Length = 641

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/313 (28%), Positives = 152/313 (48%), Gaps = 4/313 (1%)

Query: 184 PMETIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
           P ++  +N+ ++ L R G+  +  E L NEM       D ITY+T+I    R N  D   
Sbjct: 234 PFDSCSFNILIRGLCRIGKVDKAFE-LFNEMRGFGCSPDVITYNTLINGFCRVNEVDRGH 292

Query: 243 EWF-ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKM 301
           +   E + K  L PD VTY++I+  Y K GK+E+   L+   ++SG KP+   F++L   
Sbjct: 293 DLLKELLSKNDLSPDVVTYTSIISGYCKLGKMEKASILFNNMISSGIKPNAFTFNILING 352

Query: 302 FGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD 361
           FG+ GD      + +EM  LG  P+++ + +L++   + GK   +  L+ E+    L+P+
Sbjct: 353 FGKVGDMVSAENMYEEMLLLGCPPDIITFTSLIDGHCRTGKVERSLKLWHELNARNLSPN 412

Query: 362 EKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFE 421
           E T   L     K     +A      ++         +YN +++     G V+EA  +  
Sbjct: 413 EYTFAILTNALCKENRLHEARGFLRDLKWRHIVAQPFMYNPVIDGFCKAGNVDEANVILA 472

Query: 422 DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
           +M+    CKPD  +YT ++  +   G +  AI +F  M   G A + +  T LI CL KA
Sbjct: 473 EME-EKRCKPDKITYTILIIGHCMKGRLSEAISIFNRMLGTGCAPDSITMTSLISCLLKA 531

Query: 482 RRIDDLVRVFGVS 494
              ++  R+  ++
Sbjct: 532 GMPNEAYRIMQIA 544



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/241 (22%), Positives = 114/241 (47%), Gaps = 2/241 (0%)

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
           R +  G+    V Y+ +L+   +  +V+E +  +   +      D  +F++L +     G
Sbjct: 192 RTWVDGVEFSLVVYNKLLNQLVRGNQVDEAVCFFREQMGLHGPFDSCSFNILIRGLCRIG 251

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMV-ESGLTPDEKTL 365
             D    +  EM+  G  P+++ YNTL+    +  +      L  E++ ++ L+PD  T 
Sbjct: 252 KVDKAFELFNEMRGFGCSPDVITYNTLINGFCRVNEVDRGHDLLKELLSKNDLSPDVVTY 311

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
           T++I  Y K    + A  L+  M  +    +   +N L+N    +G +  AE ++E+M L
Sbjct: 312 TSIISGYCKLGKMEKASILFNNMISSGIKPNAFTFNILINGFGKVGDMVSAENMYEEMLL 371

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
              C PD  ++T++++ +   G V+ +++L+ E++   ++ N      L   L K  R+ 
Sbjct: 372 LG-CPPDIITFTSLIDGHCRTGKVERSLKLWHELNARNLSPNEYTFAILTNALCKENRLH 430

Query: 486 D 486
           +
Sbjct: 431 E 431



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 115/269 (42%), Gaps = 15/269 (5%)

Query: 259 TYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEM 318
           TYS +L   ++ G  E   ++Y+     G  PD    SVLG  F  S   D  ++ +   
Sbjct: 139 TYSFLLRSLSEMGFHESAKAVYDCMNIDGHSPDA---SVLG--FLVSSATDAGKFNIART 193

Query: 319 KSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWA 378
              GV+ +LVVYN LL  + +  +   A   F E  + GL     + +  I I G  R  
Sbjct: 194 WVDGVEFSLVVYNKLLNQLVRGNQVDEAVCFFRE--QMGLHGPFDSCSFNILIRGLCRIG 251

Query: 379 K--DALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY 436
           K   A EL+  MR      D I YNTL+N    +  V+    L +++   +   PD  +Y
Sbjct: 252 KVDKAFELFNEMRGFGCSPDVITYNTLINGFCRVNEVDRGHDLLKELLSKNDLSPDVVTY 311

Query: 437 TAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496
           T++++ Y   G ++ A  LF  M   G+  N      LI   GK   +     ++   + 
Sbjct: 312 TSIISGYCKLGKMEKASILFNNMISSGIKPNAFTFNILINGFGKVGDMVSAENMYEEMLL 371

Query: 497 RGVKPDDRLCGCLLSVVSLCETSEDVGKV 525
            G  PD      +++  SL +     GKV
Sbjct: 372 LGCPPD------IITFTSLIDGHCRTGKV 394



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/218 (22%), Positives = 92/218 (42%), Gaps = 35/218 (16%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L N M+S+ I+ +  T++ +I    +      A   +E M   G  PD +T+++++D + 
Sbjct: 330 LFNNMISSGIKPNAFTFNILINGFGKVGDMVSAENMYEEMLLLGCPPDIITFTSLIDGHC 389

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKM--------------------------- 301
           ++GKVE  L L+    A    P+   F++L                              
Sbjct: 390 RTGKVERSLKLWHELNARNLSPNEYTFAILTNALCKENRLHEARGFLRDLKWRHIVAQPF 449

Query: 302 --------FGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
                   F ++G+ D    +L EM+    +P+ + Y  L+      G+   A S+F+ M
Sbjct: 450 MYNPVIDGFCKAGNVDEANVILAEMEEKRCKPDKITYTILIIGHCMKGRLSEAISIFNRM 509

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN 391
           + +G  PD  T+T+LI    KA    +A  + +   E+
Sbjct: 510 LGTGCAPDSITMTSLISCLLKAGMPNEAYRIMQIASED 547


>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
           Japonica Group]
 gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
          Length = 648

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 164/326 (50%), Gaps = 2/326 (0%)

Query: 177 IKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCN 236
           ++ + +FP + + +NV + +       +    L + MVS  ++   +TY++++    R  
Sbjct: 182 MEKRCVFP-DVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSG 240

Query: 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS 296
           ++D+A E F+ M   G+ PD  +++ ++  + + G++EE L +Y+     G KPD ++FS
Sbjct: 241 MWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFS 300

Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356
            L  +F   G  D     L+EM+  G+ P+ V+Y  ++    +AG    A  + DEMV  
Sbjct: 301 CLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGC 360

Query: 357 GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEA 416
           G  PD  T   L+    K R   DA  L   MRE   P D   + TL++     G +++A
Sbjct: 361 GCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKA 420

Query: 417 ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
            +LF+ M L+   +PD  +Y  +++     G++D A +L+++M    +  N +  + LI 
Sbjct: 421 LQLFDTM-LNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILID 479

Query: 477 CLGKARRIDDLVRVFGVSIDRGVKPD 502
              +  +++D        I++G+ P+
Sbjct: 480 SHCEKGQVEDAFGFLDEMINKGILPN 505



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 142/300 (47%), Gaps = 5/300 (1%)

Query: 208 QLANEMVSNEIELDNITYSTIIT--CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
           ++ +EMV      D +TY+T++   C +R  L  E +     M + G+ PD  T++ ++ 
Sbjct: 352 RVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGL--LNEMRERGVPPDLCTFTTLIH 409

Query: 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325
            Y   GK+++ L L++  +    +PD + ++ L       GD D    +  +M S  + P
Sbjct: 410 GYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFP 469

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
           N V Y+ L+++  + G+   A    DEM+  G+ P+  T  ++IK Y ++       +  
Sbjct: 470 NHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFL 529

Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445
           ++M  NK   D I YNTL++       + +A +L   M+  +  +PD  +Y  ++N +  
Sbjct: 530 QKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMME-KEKVQPDVVTYNMLINGFSV 588

Query: 446 GGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRL 505
            GNV  A  +FE+M   G+  +      +I     A    +  ++    + RG  PDD+ 
Sbjct: 589 HGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGFAPDDKF 648



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 130/259 (50%), Gaps = 3/259 (1%)

Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS 261
           +F  ++ + +EM    +  D +T++ ++    R    + A+   + M   GL P  VTY+
Sbjct: 171 EFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYN 230

Query: 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
           ++L    +SG  ++   +++     G  PD  +F++L   F   G+ +    + +EM+  
Sbjct: 231 SVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHR 290

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
           G++P+LV ++ L+    + GK   A +   EM   GL PD    T +I  + +A    DA
Sbjct: 291 GIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDA 350

Query: 382 LELWERMRENKWPMDFILYNTLLN-MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
           L + + M       D + YNTLLN +C +  L+ +AE L  +M+      PD  ++T ++
Sbjct: 351 LRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLL-DAEGLLNEMR-ERGVPPDLCTFTTLI 408

Query: 441 NIYGSGGNVDNAIELFEEM 459
           + Y   G +D A++LF+ M
Sbjct: 409 HGYCIEGKLDKALQLFDTM 427



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 130/281 (46%), Gaps = 3/281 (1%)

Query: 224 TYSTIITCAKRCNL--FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYE 281
           TY+  I     C    FD+       M K  + PD VT++ ++D   ++G  E  ++L +
Sbjct: 156 TYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVD 215

Query: 282 RGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG 341
             V+ G KP  + ++ + K    SG +D    V +EM   GV P++  +  L+    + G
Sbjct: 216 SMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVG 275

Query: 342 KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYN 401
           +   A  ++ EM   G+ PD  + + LI ++ +      A+     MR      D ++Y 
Sbjct: 276 EIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYT 335

Query: 402 TLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461
            ++      GL+ +A R+ ++M +   C PD  +Y  +LN       + +A  L  EM E
Sbjct: 336 MVIGGFCRAGLMSDALRVRDEM-VGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRE 394

Query: 462 LGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            GV  ++   T LI       ++D  +++F   +++ ++PD
Sbjct: 395 RGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPD 435



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 108/228 (47%), Gaps = 1/228 (0%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           K+   F+ + +Q L P + + YN  +  +           L ++M S EI  +++TYS +
Sbjct: 419 KALQLFDTMLNQRLRP-DIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSIL 477

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
           I         ++A  + + M   G++P+ +TY++I+  Y +SG V +     ++ + +  
Sbjct: 478 IDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKV 537

Query: 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348
            PD I ++ L   + +         +L  M+   VQP++V YN L+      G    A  
Sbjct: 538 SPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGW 597

Query: 349 LFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMD 396
           +F++M   G+ PD  T  ++I  +  A  +K+A +L + M +  +  D
Sbjct: 598 IFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGFAPD 645



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 79/176 (44%), Gaps = 1/176 (0%)

Query: 339 KAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFI 398
           +AG P LA   +  +  S    +  TL  ++  Y KA        +   M +     D +
Sbjct: 133 RAGWPHLAADAYRLVFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVV 192

Query: 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458
            +N +++     G  E A  L + M +S   KP   +Y ++L      G  D A E+F+E
Sbjct: 193 THNVMVDARFRAGDAEAAMALVDSM-VSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKE 251

Query: 459 MSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVS 514
           M + GVA +V   T LI    +   I++ ++++     RG+KPD     CL+ + +
Sbjct: 252 MDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFA 307


>gi|307103654|gb|EFN51912.1| hypothetical protein CHLNCDRAFT_59068 [Chlorella variabilis]
          Length = 1025

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/305 (27%), Positives = 147/305 (48%), Gaps = 8/305 (2%)

Query: 161 LNSLKFWQKSYFFFNWIK----SQNLFPM-ETIFYNVTMKSLRFGRQFQLIEQLANEMVS 215
           LN     +++   F+W++    S +L+P+  T+ Y   +      +Q +   +L  EM S
Sbjct: 164 LNKSGHVRRAQELFDWLRGLDDSHDLYPLCNTMTYTTMISQCGTQQQLRRALELVAEMRS 223

Query: 216 NEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEE 275
             I+ +  TYS ++    + N  D A++ + +M   G  P+ VTY+ ++DVY K+G  EE
Sbjct: 224 RGIQCNVHTYSALMNVCIKGNELDLALDVYRQMLAEGCTPNLVTYNTLIDVYGKTGAWEE 283

Query: 276 VLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLE 335
            + + +     G  P+   ++ +      SG       + + M + G QP    Y  L+ 
Sbjct: 284 AIRVLDALERQGIDPEIRTYNTVIIACNMSGQAQEALRIYERMLAAGAQPTATTYTALIS 343

Query: 336 AMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA-RWAKDALELWERMRENKWP 394
           A GK G+   A  +F +MV  G   +  T ++LI    KA RW + ALEL+  M      
Sbjct: 344 AYGKNGQLDRALQIFQDMVRRGCERNVITYSSLISACEKAGRW-ELALELFREMHTEGCR 402

Query: 395 MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIE 454
            + + YN+L+  CA     E+A+ +FE M+    CKPD  ++  ++  Y   G+   A+ 
Sbjct: 403 PNVVTYNSLIAACAQGAQWEKAQEMFEQMQHRG-CKPDAVTFGGLIAAYDRAGHWRRALT 461

Query: 455 LFEEM 459
            FE+M
Sbjct: 462 AFEQM 466



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 138/296 (46%), Gaps = 9/296 (3%)

Query: 256 DEVTYSAILDVYAKSGKVEEVLSLYE--RGVASGWKPDPIAFSV-LGKMFGESGDYDGIR 312
           D    +A+L    KSG V     L++  RG+       P+  ++    M  + G    +R
Sbjct: 153 DSGALAALLKELNKSGHVRRAQELFDWLRGLDDSHDLYPLCNTMTYTTMISQCGTQQQLR 212

Query: 313 YVLQ---EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
             L+   EM+S G+Q N+  Y+ L+    K  +  LA  ++ +M+  G TP+  T   LI
Sbjct: 213 RALELVAEMRSRGIQCNVHTYSALMNVCIKGNELDLALDVYRQMLAEGCTPNLVTYNTLI 272

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
            +YGK    ++A+ + + +       +   YNT++  C   G  +EA R++E M L+   
Sbjct: 273 DVYGKTGAWEEAIRVLDALERQGIDPEIRTYNTVIIACNMSGQAQEALRIYERM-LAAGA 331

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
           +P   +YTA+++ YG  G +D A+++F++M   G   NV+  + LI    KA R +  + 
Sbjct: 332 QPTATTYTALISAYGKNGQLDRALQIFQDMVRRGCERNVITYSSLISACEKAGRWELALE 391

Query: 490 VFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ--ANPKLVAFLNLI 543
           +F      G +P+      L++  +     E   ++   +Q     P  V F  LI
Sbjct: 392 LFREMHTEGCRPNVVTYNSLIAACAQGAQWEKAQEMFEQMQHRGCKPDAVTFGGLI 447



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 126/292 (43%), Gaps = 36/292 (12%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           + +TY+T+I+          A+E    M   G+  +  TYSA+++V  K  +++  L +Y
Sbjct: 194 NTMTYTTMISQCGTQQQLRRALELVAEMRSRGIQCNVHTYSALMNVCIKGNELDLALDVY 253

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
                                              ++M + G  PNLV YNTL++  GK 
Sbjct: 254 -----------------------------------RQMLAEGCTPNLVTYNTLIDVYGKT 278

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G    A  + D +   G+ P+ +T   +I     +  A++AL ++ERM           Y
Sbjct: 279 GAWEEAIRVLDALERQGIDPEIRTYNTVIIACNMSGQAQEALRIYERMLAAGAQPTATTY 338

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
             L++     G ++ A ++F+DM +   C+ +  +Y+++++     G  + A+ELF EM 
Sbjct: 339 TALISAYGKNGQLDRALQIFQDM-VRRGCERNVITYSSLISACEKAGRWELALELFREMH 397

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSV 512
             G   NV+    LI    +  + +    +F     RG KPD    G L++ 
Sbjct: 398 TEGCRPNVVTYNSLIAACAQGAQWEKAQEMFEQMQHRGCKPDAVTFGGLIAA 449


>gi|449476143|ref|XP_004154653.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/335 (28%), Positives = 164/335 (48%), Gaps = 2/335 (0%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           ++++   N   S+ + P   + YN  +  L    ++   + +  EM+   +  +  TY+T
Sbjct: 309 EEAFQLLNSFSSRGMEP-GLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNT 367

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           ++    R +   EA E F+ M + G++PD V++S+++ V A++G + + L  +     SG
Sbjct: 368 LLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSG 427

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
             PD + +++L   F  +G       +  EM + G   ++V YNT L  + K      A 
Sbjct: 428 IVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADAD 487

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
            LF+EMVE G+ PD  T T LI+ Y K      AL L+E M       D + YNTL++  
Sbjct: 488 MLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGF 547

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
              G +  A+ L++DM   D   PD+ SY  +LN + S G +  A+ L ++M E G+  N
Sbjct: 548 CKAGEMGRAKELWDDMIRKDII-PDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPN 606

Query: 468 VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           ++ C  LI+   ++  +          I  G+ PD
Sbjct: 607 LVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPD 641



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 80/282 (28%), Positives = 140/282 (49%), Gaps = 3/282 (1%)

Query: 185 METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEW 244
           M+ + YN  +  L   + F   + L NEMV   +  D  T++T+I    +    D+A+  
Sbjct: 465 MDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNL 524

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
           FE M +T L PD+VTY+ ++D + K+G++     L++  +     PD I++  +   F  
Sbjct: 525 FEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCS 584

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
           SG       +  +M   G++PNLV  NTL++   ++G    A     +M+ +G+ PD  +
Sbjct: 585 SGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFS 644

Query: 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN-MCADIGLVEEAERLFEDM 423
              LI  Y K    + A  L   M +     + I YN +LN  CA+ G ++EAE++   M
Sbjct: 645 YNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAE-GKMQEAEQVLRKM 703

Query: 424 KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
            +     PD  +Y++++N + S  N+  A    +EM + G+ 
Sbjct: 704 -IEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRGLV 744



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 143/306 (46%), Gaps = 8/306 (2%)

Query: 191 NVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYK 250
           N+ + +L   R+F+ +    ++M    +  D +TY+T+I    R  L +EA +       
Sbjct: 261 NIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSS 320

Query: 251 TGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDG 310
            G+ P  +TY+AIL    K GK +    +    +  G  P+   ++ L        +   
Sbjct: 321 RGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILE 380

Query: 311 IRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK 370
            + +  EM   GV P+LV +++L+  + + G    A   F EM  SG+ PD    T LI 
Sbjct: 381 AQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILID 440

Query: 371 IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCK 430
            + +     DAL++ + M      MD + YNT LN      +  +A+ LF +M +     
Sbjct: 441 GFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEM-VERGMV 499

Query: 431 PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ--C----LGKARRI 484
           PD Y++T ++  Y   GN+D A+ LFE M    +  + +    LI   C    +G+A+ +
Sbjct: 500 PDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKEL 559

Query: 485 -DDLVR 489
            DD++R
Sbjct: 560 WDDMIR 565



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 77/330 (23%), Positives = 144/330 (43%), Gaps = 34/330 (10%)

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
           +++ +EM    +  D +++S++I    R     +A+  F  M ++G++PD V Y+ ++D 
Sbjct: 382 QEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDG 441

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
           + ++G + + L + +  +A G   D + ++       +   +     +  EM   G+ P+
Sbjct: 442 FCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPD 501

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
              + TL+    K G    A +LF+ MV + L PD+ T   LI  + KA     A ELW+
Sbjct: 502 FYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWD 561

Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK--------------LSDYCK-- 430
            M       D I Y T+LN     GL+ EA  L + M               +  YC+  
Sbjct: 562 DMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSG 621

Query: 431 ------------------PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
                             PD++SY  +++ Y    N++ A  L  EM + G+  N++   
Sbjct: 622 DMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYN 681

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            ++       ++ +  +V    I+ G+ PD
Sbjct: 682 LILNGFCAEGKMQEAEQVLRKMIEIGINPD 711



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 146/298 (48%), Gaps = 1/298 (0%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           ++ +EM++    +D +TY+T +    +  +F +A   F  M + G++PD  T++ ++  Y
Sbjct: 453 KMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGY 512

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            K G +++ L+L+E  V +  KPD + ++ L   F ++G+    + +  +M    + P+ 
Sbjct: 513 CKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDH 572

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
           + Y T+L     +G    A +L D+M+E G+ P+  T   LIK Y ++     A E   +
Sbjct: 573 ISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSK 632

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           M  N    D   YNTL++       +E+A  L  +M+     + +  +Y  +LN + + G
Sbjct: 633 MISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRG-LQFNIITYNLILNGFCAEG 691

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRL 505
            +  A ++  +M E+G+  +    + LI        + +  R     + RG+ PDDR 
Sbjct: 692 KMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRGLVPDDRF 749



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 131/295 (44%), Gaps = 36/295 (12%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           ++  E+V   IEL+  T + ++    +   F+  + +   M   G+  D VTY+ +++ Y
Sbjct: 243 EIYGEVVRGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAY 302

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            + G VEE   L                                   L    S G++P L
Sbjct: 303 CREGLVEEAFQL-----------------------------------LNSFSSRGMEPGL 327

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
           + YN +L  + K GK   A+ +  EM++ GLTP+  T   L+    +     +A E+++ 
Sbjct: 328 LTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDE 387

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           M       D + +++L+ + A  G + +A   F +M+ S    PDN  YT +++ +   G
Sbjct: 388 MSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIV-PDNVIYTILIDGFCRNG 446

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            + +A+++ +EM   G  ++V+     +  L K +   D   +F   ++RG+ PD
Sbjct: 447 ALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPD 501


>gi|414588908|tpg|DAA39479.1| TPA: chloroplast RNA splicing4 [Zea mays]
          Length = 1438

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 125/239 (52%), Gaps = 1/239 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D ITY+T+I+   + +  ++A+  FE M  +   PD  TY+A++ V+ + GK EE   L+
Sbjct: 292 DVITYNTLISACSQSSNLEDAVTVFEDMIASECRPDLWTYNAMVSVHGRCGKAEEAERLF 351

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
              V  G+ PD I ++ L   F + G+ D + +  +++   G + N + YNT++   GK 
Sbjct: 352 RELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEITYNTMIHMYGKM 411

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G+  LA  L+DEM   G TPD  T T +I   GK     +A ++ E M +       I +
Sbjct: 412 GRLDLAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVLEDMTDAGLKPTLIAF 471

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           + L+   A  G   +AE  F+ M ++   KPD  +Y  ML+++   G+ +  + L+ +M
Sbjct: 472 SALICAYAKGGRRADAENTFDCM-IASGVKPDRLAYLVMLDVFARSGDTEKMLCLYRKM 529



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/354 (24%), Positives = 174/354 (49%), Gaps = 8/354 (2%)

Query: 177 IKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCN 236
           ++   L P + I YN  + +       +    +  +M+++E   D  TY+ +++   RC 
Sbjct: 284 VRQSGLRP-DVITYNTLISACSQSSNLEDAVTVFEDMIASECRPDLWTYNAMVSVHGRCG 342

Query: 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS 296
             +EA   F  + + G MPD +TY+++L  +AK G V++V    E+ V +G+K + I ++
Sbjct: 343 KAEEAERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEITYN 402

Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356
            +  M+G+ G  D    +  EM+++G  P+ V Y  +++++GK  +   A  + ++M ++
Sbjct: 403 TMIHMYGKMGRLDLAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVLEDMTDA 462

Query: 357 GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEA 416
           GL P     +ALI  Y K     DA   ++ M  +    D + Y  +L++ A  G  E+ 
Sbjct: 463 GLKPTLIAFSALICAYAKGGRRADAENTFDCMIASGVKPDRLAYLVMLDVFARSGDTEKM 522

Query: 417 ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINV-MGCTCLI 475
             L+  M ++D  +PD+  Y  +L         +   E+ ++M EL   +N+ +  T LI
Sbjct: 523 LCLYRKM-MNDNYRPDDDMYQVLLVALAKEDKCEEIEEVIQDM-ELLCRMNLGIISTMLI 580

Query: 476 QCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCL 529
               KAR +    ++   +  +G KPD +    +++   + E  E+   ++ C+
Sbjct: 581 ----KARCVSQGAKLLKKACLQGYKPDIKSLRSIMNAYVMTEKHEEGLSLLECI 630



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/339 (22%), Positives = 163/339 (48%), Gaps = 3/339 (0%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKR--CNLFDEAIEWFER 247
           +N  M       +F    QL + M    I+ D ++++T+I    +  C     A++    
Sbjct: 224 FNAMMGVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINARSKSGCLAAGVALDLLFE 283

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           + ++GL PD +TY+ ++   ++S  +E+ ++++E  +AS  +PD   ++ +  + G  G 
Sbjct: 284 VRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEDMIASECRPDLWTYNAMVSVHGRCGK 343

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
            +    + +E+   G  P+ + YN+LL A  K G         +++V++G   +E T   
Sbjct: 344 AEEAERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEITYNT 403

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           +I +YGK      A+ L++ MR      D + Y  +++    +  + EA ++ EDM  + 
Sbjct: 404 MIHMYGKMGRLDLAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVLEDMTDAG 463

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
             KP   +++A++  Y  GG   +A   F+ M   GV  + +    ++    ++   + +
Sbjct: 464 L-KPTLIAFSALICAYAKGGRRADAENTFDCMIASGVKPDRLAYLVMLDVFARSGDTEKM 522

Query: 488 VRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           + ++   ++   +PDD +   LL  ++  +  E++ +VI
Sbjct: 523 LCLYRKMMNDNYRPDDDMYQVLLVALAKEDKCEEIEEVI 561



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 139/308 (45%), Gaps = 11/308 (3%)

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           +A EW  R       P     + +L V  ++ +      ++ R    G       F+ + 
Sbjct: 175 DAFEWLAR----SSAPASRAVAVVLGVLGRARQDSIAEEVFLRFAGEGATVQ--VFNAMM 228

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG--KPGLARSLFDEMVESG 357
            ++  SG +D  R +L  M   G+ P+LV +NTL+ A  K+G    G+A  L  E+ +SG
Sbjct: 229 GVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINARSKSGCLAAGVALDLLFEVRQSG 288

Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417
           L PD  T   LI    ++   +DA+ ++E M  ++   D   YN ++++    G  EEAE
Sbjct: 289 LRPDVITYNTLISACSQSSNLEDAVTVFEDMIASECRPDLWTYNAMVSVHGRCGKAEEAE 348

Query: 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
           RLF ++    +  PD  +Y ++L  +   GNVD      E++ + G   N +    +I  
Sbjct: 349 RLFRELVEKGF-MPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEITYNTMIHM 407

Query: 478 LGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PK 535
            GK  R+D  V ++      G  PD      ++  +       + GKV+  +  A   P 
Sbjct: 408 YGKMGRLDLAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVLEDMTDAGLKPT 467

Query: 536 LVAFLNLI 543
           L+AF  LI
Sbjct: 468 LIAFSALI 475



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 100/471 (21%), Positives = 204/471 (43%), Gaps = 24/471 (5%)

Query: 173  FFNWIKSQNLFPMETIFYNVTMKSL----RFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
            F N IK+  L  ++++  N  M++L    R    + ++E+L +           I+ ST+
Sbjct: 803  FDNMIKTGPLPTVDSV--NGMMRALIVDGRLDELYVVVEELQDMNF-------KISKSTV 853

Query: 229  I----TCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
            +      AK  ++F E ++ +  M   G +P+   Y +++ +     +  +V  +     
Sbjct: 854  LLLLDAFAKAGDVF-EVMKIYNGMKAAGYLPNMHLYRSMISLLCHHNRFRDVELMIAEME 912

Query: 285  ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344
             +G+KPD    + L  M+  +G++D    V + +   G++P+   YNTL+    ++ +P 
Sbjct: 913  GAGFKPDLAILNALLNMYTAAGNFDRTTQVYRSILEAGLEPDEDTYNTLIVMYCRSFRPE 972

Query: 345  LARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
               +L +EM + GLTP  ++  +L+    KA   + A +++E MR   + ++  +Y+ ++
Sbjct: 973  EGFTLLNEMGKRGLTPKLQSYKSLLAASAKAELREQADQIFEEMRSKSYQLNRSIYHMMM 1032

Query: 405  NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
             +  + G   +AE L   MK  D  +P   +   ++  YG+ G    A  +   +    +
Sbjct: 1033 KIYRNAGNHSKAENLLAVMK-EDGIEPTIATMHILMTSYGTAGQPREAENVLNNLKSSSL 1091

Query: 465  AINVMGCTCLIQC-LGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVG 523
             ++ +  + +    L          ++  +  D GV+PD ++  C +   SLCE + D  
Sbjct: 1092 EVSTLPYSTVFDAYLKNGDYNHGTTKLLEMKRD-GVEPDHQVWTCFIRAASLCEQTADAI 1150

Query: 524  KVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNR 583
             ++  LQ     L   + L+ + +    +    +   ++  E  A   F N + D+    
Sbjct: 1151 LLLKSLQDCGFDLP--IRLLTERTPSLLSEIANYLEELEALEDSAALNFVNAVEDLLWAF 1208

Query: 584  NLNERAHELLYLGTLYGLY-PGLHNKTLDEWSLDVRSLSVGAAQTALEEWM 633
                 A  +  L     +Y   +      +W  D R LS GAA   L  W+
Sbjct: 1209 ECRATASRIFQLAVERSIYRDNVFRVAQKDWGADFRKLSAGAALVGLTLWL 1259



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 66/337 (19%), Positives = 131/337 (38%), Gaps = 36/337 (10%)

Query: 225  YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
            Y  +ITC      F EA + F  M   G+   +  Y +I+  Y K G  E    L +  +
Sbjct: 678  YEYLITCLIEAEFFSEACQVFCDMQFIGIEASKSIYESIISTYCKLGFPETAHRLMDDAL 737

Query: 285  ASG---------------------WKPDPI--------------AFSVLGKMFGESGDYD 309
             SG                     W+   I               ++ L   + ESG Y+
Sbjct: 738  QSGIPLNILSCRVIIIEAYGKIKLWQQAEILVKGLRQASGIDRRIWNALIHAYAESGLYE 797

Query: 310  GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
              R V   M   G  P +   N ++ A+   G+      + +E+ +      + T+  L+
Sbjct: 798  KARAVFDNMIKTGPLPTVDSVNGMMRALIVDGRLDELYVVVEELQDMNFKISKSTVLLLL 857

Query: 370  KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
              + KA    + ++++  M+   +  +  LY +++++        + E +  +M+ + + 
Sbjct: 858  DAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRSMISLLCHHNRFRDVELMIAEMEGAGF- 916

Query: 430  KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
            KPD     A+LN+Y + GN D   +++  + E G+  +      LI    ++ R ++   
Sbjct: 917  KPDLAILNALLNMYTAAGNFDRTTQVYRSILEAGLEPDEDTYNTLIVMYCRSFRPEEGFT 976

Query: 490  VFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
            +      RG+ P  +    LL+  +  E  E   ++ 
Sbjct: 977  LLNEMGKRGLTPKLQSYKSLLAASAKAELREQADQIF 1013


>gi|449522636|ref|XP_004168332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/344 (27%), Positives = 162/344 (47%), Gaps = 3/344 (0%)

Query: 183 FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
           FP +  +YN+ +         +  + + NE+    +    ++++T+I    +    DE  
Sbjct: 219 FPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGF 278

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
              + M +  + PD  TYS ++    K G+++    L++     G +P+ I F+ L    
Sbjct: 279 RLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQ 338

Query: 303 GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
             S   D       +M ++GV+P+LV+YNTLL  + K G    AR L DEM   G+ PD+
Sbjct: 339 YRSRRMDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMKMVGMKPDK 398

Query: 363 KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN-MCADIGLVEEAERLFE 421
            T T LI  Y K    + A+E+ + M E    +D + +  L++  C D G V +AER   
Sbjct: 399 ITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRD-GRVRDAERTLR 457

Query: 422 DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
           +M +    KPD+ +YT +++ Y   GNV    +L +EM   G    V+    L+  L K 
Sbjct: 458 EM-VEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQ 516

Query: 482 RRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKV 525
            ++ +   +    ++ GV PDD     LL        +ED+ K+
Sbjct: 517 GQMKNANMLLEAMLNLGVTPDDITYNILLEGHCKNGKAEDLLKL 560



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 136/260 (52%), Gaps = 1/260 (0%)

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
           ++  + + G  P    Y+ +++ + K G + +   ++      G +P  ++F+ L     
Sbjct: 210 FYSEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLC 269

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
           +S + D    + + M+   + P++  Y+ L+  + K G+  +A  LFDEM + GL P+  
Sbjct: 270 KSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGI 329

Query: 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
           T TALI    ++R    A+  + +M       D ++YNTLLN    +G V +A +L ++M
Sbjct: 330 TFTALIDGQYRSRRMDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEM 389

Query: 424 KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483
           K+    KPD  +YT +++ Y   G++++A+E+ + M+E GV ++ +  T LI    +  R
Sbjct: 390 KMVGM-KPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGR 448

Query: 484 IDDLVRVFGVSIDRGVKPDD 503
           + D  R     ++ G+KPDD
Sbjct: 449 VRDAERTLREMVEAGMKPDD 468



 Score =  112 bits (280), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 144/322 (44%), Gaps = 37/322 (11%)

Query: 172 FFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITC 231
             FN I+ + L P  T+ +N  +  L   R      +L   M  N I  D  TYS +I  
Sbjct: 244 LIFNEIRKRGLRP-TTVSFNTLINGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHG 302

Query: 232 AKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291
             +    D A + F+ M + GL P+ +T++A++D   +S +++  ++ Y + +  G KPD
Sbjct: 303 LCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQYRSRRMDSAMNTYHQMLTMGVKPD 362

Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG--------KP 343
            + ++ L     + GD +  R ++ EMK +G++P+ + Y TL++   K G        + 
Sbjct: 363 LVMYNTLLNGLCKVGDVNKARKLVDEMKMVGMKPDKITYTTLIDGYCKEGDLESAMEIRK 422

Query: 344 GL---------------------------ARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
           G+                           A     EMVE+G+ PD+ T T +I  Y K  
Sbjct: 423 GMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKG 482

Query: 377 WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY 436
             K   +L + M+ N      I YN L+N     G ++ A  L E M L+    PD+ +Y
Sbjct: 483 NVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAM-LNLGVTPDDITY 541

Query: 437 TAMLNIYGSGGNVDNAIELFEE 458
             +L  +   G  ++ ++L  E
Sbjct: 542 NILLEGHCKNGKAEDLLKLRNE 563


>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
 gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
          Length = 471

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/275 (30%), Positives = 140/275 (50%), Gaps = 2/275 (0%)

Query: 213 MVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK 272
           MV+  +  + +TYS +I    +   F EA E  E M  +G+ PD  TYSA++    K+ K
Sbjct: 153 MVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADK 212

Query: 273 VEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNT 332
           +EE   +  R   SG  PD + +S +   F +SG     +  LQEM+     P++V YNT
Sbjct: 213 IEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNT 272

Query: 333 LLEAMGKAGKPGLARSLFDEMVESG-LTPDEKTLTALIKIYGKARWAKDALELWERMREN 391
           +++ + K GK   A+ + D+M ESG + PD  T + +I    K+    +A +L +RM + 
Sbjct: 273 VIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKA 332

Query: 392 KWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDN 451
               D + Y T+++     G +EEAE L + MK +  C P+  +YT +++       VD 
Sbjct: 333 GCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAG-CAPNVVTYTTLISGLCKARKVDE 391

Query: 452 AIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
           A  + EEM   G   N++    ++  L  + RI +
Sbjct: 392 AERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKE 426



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/364 (23%), Positives = 164/364 (45%), Gaps = 36/364 (9%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
            + ++S    P   + Y   + +    ++ +   +L  EM       + +TY+ ++    
Sbjct: 45  MDHLRSMGCDP-NVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALC 103

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
           + ++   A +  ++M + G  P+ +T+++++D + K G V++   L    VA G +P+ +
Sbjct: 104 KLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVV 163

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
            +S L     +S  +   + VL+EMK+ GV P+   Y+ L+  + KA K   A  +   M
Sbjct: 164 TYSALIDGLCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRM 223

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
             SG TPD    +++I  + K+    +A +  + MR+ +   D + YNT+++    +G +
Sbjct: 224 AGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKI 283

Query: 414 EEAERLFEDM------------------------------KLSDY-----CKPDNYSYTA 438
            EA+ + + M                              KL D      C PD  +YT 
Sbjct: 284 AEAQVILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTT 343

Query: 439 MLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRG 498
           +++     G ++ A  L + M   G A NV+  T LI  L KAR++D+  RV     + G
Sbjct: 344 IIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAG 403

Query: 499 VKPD 502
             P+
Sbjct: 404 CPPN 407



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/310 (27%), Positives = 137/310 (44%), Gaps = 37/310 (11%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
            + Y+  +  L   ++F   +++  EM ++ +  D  TYS +I    + +  +EA +   
Sbjct: 162 VVTYSALIDGLCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLR 221

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV-------LG 299
           RM  +G  PD V YS+I+  + KSGK+ E     +        PD + ++        LG
Sbjct: 222 RMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLG 281

Query: 300 KM---------FGESGDY--DGIRY------------------VLQEMKSLGVQPNLVVY 330
           K+           ESGD   D + Y                  +L  M   G  P++V Y
Sbjct: 282 KIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTY 341

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
            T+++ + K G+   A  L   M  +G  P+  T T LI    KAR   +A  + E MR 
Sbjct: 342 TTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRN 401

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY-CKPDNYSYTAMLNIYGSGGNV 449
              P + + YNT++N     G ++EA++L + MK     C PD  +Y  ++N   S   V
Sbjct: 402 AGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSSDLV 461

Query: 450 DNAIELFEEM 459
             A +L E+M
Sbjct: 462 QEAEQLLEQM 471



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 118/252 (46%), Gaps = 6/252 (2%)

Query: 235 CNLFD--EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
           CN  D   A+E  E M   G  PD  T++ I+   A +G ++  +       + G  P+ 
Sbjct: 1   CNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLR---SMGCDPNV 57

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           + ++ L   F  +   +    +L+EM+  G  PNLV YN L++A+ K    G A+ +  +
Sbjct: 58  VTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKK 117

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M+E G  P+  T  +L+  + K     DA +L   M       + + Y+ L++       
Sbjct: 118 MIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQK 177

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
             EA+ + E+MK S    PD ++Y+A+++       ++ A ++   M+  G   +V+  +
Sbjct: 178 FLEAKEVLEEMKASGV-TPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYS 236

Query: 473 CLIQCLGKARRI 484
            +I    K+ ++
Sbjct: 237 SIIHAFCKSGKL 248



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 106/208 (50%), Gaps = 7/208 (3%)

Query: 186 ETIFYNVTMKSL-RFGR--QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
           + + YN  +  L + G+  + Q+I     E  S ++  D +TYST+I    + ++  EA 
Sbjct: 266 DVVTYNTVIDGLCKLGKIAEAQVILDQMQE--SGDVLPDVVTYSTVINGLCKSDMLVEAQ 323

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
           +  +RM K G  PD VTY+ I+D   K G++EE   L +    +G  P+ + ++ L    
Sbjct: 324 KLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGL 383

Query: 303 GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVE--SGLTP 360
            ++   D    V++EM++ G  PNLV YNT++  +  +G+   A+ L   M +  +  +P
Sbjct: 384 CKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSP 443

Query: 361 DEKTLTALIKIYGKARWAKDALELWERM 388
           D  T   ++     +   ++A +L E+M
Sbjct: 444 DAATYRTIVNALMSSDLVQEAEQLLEQM 471



 Score = 43.5 bits (101), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 4/122 (3%)

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
           ALEL E M+   +  D   +  ++   A+ G ++ A      M     C P+  +YTA++
Sbjct: 9   ALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSMG----CDPNVVTYTALI 64

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
             +     ++ A++L EEM E G   N++    L+  L K   +     V    I+ G  
Sbjct: 65  AAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFA 124

Query: 501 PD 502
           P+
Sbjct: 125 PN 126


>gi|296081530|emb|CBI20053.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 92/374 (24%), Positives = 171/374 (45%), Gaps = 43/374 (11%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           +K+  F  +++     P   + YN  +         +   ++ + M    IE D+ TY +
Sbjct: 244 KKAREFIGFMEGLGFKP-NVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGS 302

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           +I+   +    +EA   F++M + GL+P+ VTY+ ++D Y   G +E   S  +  V  G
Sbjct: 303 LISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKG 362

Query: 288 WKPDPIAFSVLGK---MFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344
             P    +++L     M G  G+ D +   ++EM+  G+ P+ + YN L+    + G   
Sbjct: 363 IMPSVSTYNLLVHALFMEGRMGEADDM---IKEMRKKGIIPDAITYNILINGYSRCGNAK 419

Query: 345 LARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
            A  L +EM+  G+ P   T T+LI +  +    K+A +L+E++ +     D I++N ++
Sbjct: 420 KAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMV 479

Query: 405 N-MCADI----------------------------------GLVEEAERLFEDMKLSDYC 429
           +  CA+                                   G VEEA  L ++MK     
Sbjct: 480 DGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRG-I 538

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
           KPD+ SY  +++ YG  G++ +A  + +EM  +G    ++    LI+CL K +  D    
Sbjct: 539 KPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEE 598

Query: 490 VFGVSIDRGVKPDD 503
           +    +++G+ PDD
Sbjct: 599 LLKEMVNKGISPDD 612



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 127/265 (47%), Gaps = 4/265 (1%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN+ + +L    +    + +  EM    I  D ITY+ +I    RC    +A +    M 
Sbjct: 370 YNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEML 429

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
             G+ P  VTY++++ V ++  +++E   L+E+ +  G  PD I F+ +      +G+ +
Sbjct: 430 SKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVE 489

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               +L+EM    V P+ V +NTL++   + GK   AR L DEM   G+ PD  +   LI
Sbjct: 490 RAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLI 549

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
             YG+    KDA  + + M    +    + YN L+         + AE L ++M ++   
Sbjct: 550 SGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEM-VNKGI 608

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIE 454
            PD+ +Y +++      GNVD  +E
Sbjct: 609 SPDDSTYLSLIE---GMGNVDTLVE 630



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 126/269 (46%), Gaps = 1/269 (0%)

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
           + N  + A   +  M++  +     T++ +++V  K GK+++           G+KP+ +
Sbjct: 204 KLNRMEMAWVLYAEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVV 263

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
           +++ +   +   G+ +G R +L  M+  G++P+   Y +L+  M K G+   A  LFD+M
Sbjct: 264 SYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKM 323

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
           VE GL P+  T   LI  Y      + A    + M +         YN L++     G +
Sbjct: 324 VEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRM 383

Query: 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTC 473
            EA+ + ++M+      PD  +Y  ++N Y   GN   A +L  EM   G+    +  T 
Sbjct: 384 GEADDMIKEMRKKGII-PDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTS 442

Query: 474 LIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           LI  L +  R+ +   +F   +D+GV PD
Sbjct: 443 LIYVLSRRNRMKEADDLFEKILDQGVSPD 471



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 119/261 (45%), Gaps = 1/261 (0%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  EM    I     T++ ++    +     +A E+   M   G  P+ V+Y+ I+  Y+
Sbjct: 214 LYAEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYS 273

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
             G +E    + +     G +PD   +  L     + G  +    +  +M  +G+ PN V
Sbjct: 274 SRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAV 333

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            YNTL++     G    A S  DEMV+ G+ P   T   L+          +A ++ + M
Sbjct: 334 TYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEM 393

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
           R+     D I YN L+N  +  G  ++A  L  +M LS   +P + +YT+++ +      
Sbjct: 394 RKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEM-LSKGIEPTHVTYTSLIYVLSRRNR 452

Query: 449 VDNAIELFEEMSELGVAINVM 469
           +  A +LFE++ + GV+ +V+
Sbjct: 453 MKEADDLFEKILDQGVSPDVI 473



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/281 (23%), Positives = 116/281 (41%), Gaps = 42/281 (14%)

Query: 239 DEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
           DEA + F  M + G++P   T + +L ++ K  ++E    LY              F+++
Sbjct: 174 DEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMFRLRISSTVYTFNIM 233

Query: 299 GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
             +  + G     R  +  M+ LG +PN+V YNT++      G    AR + D M   G+
Sbjct: 234 VNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGI 293

Query: 359 TPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAER 418
            PD  T  +LI    K    ++A  L+++M E                   IGLV     
Sbjct: 294 EPDSYTYGSLISGMCKEGRLEEASGLFDKMVE-------------------IGLV----- 329

Query: 419 LFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL 478
                       P+  +Y  +++ Y + G+++ A    +EM + G+  +V     L+  L
Sbjct: 330 ------------PNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHAL 377

Query: 479 ---GKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLC 516
              G+    DD+++       +G+ PD      L++  S C
Sbjct: 378 FMEGRMGEADDMIKEMR---KKGIIPDAITYNILINGYSRC 415



 Score = 40.8 bits (94), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 80/180 (44%), Gaps = 28/180 (15%)

Query: 347 RSLFDEMVESGLTPDEKTLTA------LIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           R LFDE+    L+ D  ++ +      L+++  + R A +A + +  M+E          
Sbjct: 139 RELFDELT---LSRDRLSVKSSIVFDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETC 195

Query: 401 NTLLNMCADIGLVEEAERLFEDM---KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE 457
           N +L++   +  +E A  L+ +M   ++S       Y++  M+N+    G +  A E   
Sbjct: 196 NDMLSLFLKLNRMEMAWVLYAEMFRLRISSTV----YTFNIMVNVLCKEGKLKKAREFIG 251

Query: 458 EMSELGVAINVMGCTCLIQC------LGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
            M  LG   NV+    +I        +  ARRI D +RV      +G++PD    G L+S
Sbjct: 252 FMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRV------KGIEPDSYTYGSLIS 305


>gi|297737146|emb|CBI26347.3| unnamed protein product [Vitis vinifera]
          Length = 862

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 147/298 (49%), Gaps = 14/298 (4%)

Query: 159 LILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEI 218
           +IL     W+++   F W+K +  + +  I YN+ ++ L   R++  +E L +EM+S  I
Sbjct: 168 IILKEQSCWERALEIFEWLKKKGCYELNVIHYNIMLRILGKARKWHHVESLWDEMMSRGI 227

Query: 219 ELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS 278
              N TY T+I    +  L +EA+ W +RM K G+ PDEVT   ++  Y K+G+ ++   
Sbjct: 228 TPVNSTYGTLIDVYSKGGLTEEALHWLDRMNKQGMEPDEVTMGVVVQTYKKAGEFKKAEQ 287

Query: 279 LYER-GVASGWKP----DPIAFSVLGKMFGESGDY----DGIRYVLQEMKSLGVQPNLVV 329
            ++   + S  +P        ++ L   +G++G      D   ++L+E    G+ PN V 
Sbjct: 288 FFKNWSLESASQPHVCLSSYTYNTLIDTYGKAGQLREASDTFAWMLRE----GIIPNTVT 343

Query: 330 YNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMR 389
           +NT++   G  G+   A SL  +M E    PD +T   LI ++ K      A   +++M+
Sbjct: 344 FNTMIHICGNHGQLEEAASLMQKMEELRCPPDTRTYNILISLHAKHNNIDRAASYFKKMK 403

Query: 390 ENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           E +   D + Y TLL   +   LV EAE L  +M      + D ++ +A+  +Y   G
Sbjct: 404 EARLEPDLVSYRTLLYAFSIRHLVGEAEILVSEMDERGL-EIDEFTQSALTRMYIEAG 460



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 124/525 (23%), Positives = 221/525 (42%), Gaps = 59/525 (11%)

Query: 117 YNPRVRDLKLFARKLNDCDNT-EEAFLRAITEIPHQPTRENALLILNSLKFWQKSYFFFN 175
           YN  +R L   ARK +  ++  +E   R IT  P   T    + + +     +++  + +
Sbjct: 199 YNIMLRILGK-ARKWHHVESLWDEMMSRGIT--PVNSTYGTLIDVYSKGGLTEEALHWLD 255

Query: 176 WIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLAN----EMVSN-EIELDNITYSTIIT 230
            +  Q + P E     V +++ +   +F+  EQ       E  S   + L + TY+T+I 
Sbjct: 256 RMNKQGMEPDEVTM-GVVVQTYKKAGEFKKAEQFFKNWSLESASQPHVCLSSYTYNTLID 314

Query: 231 CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
              +     EA + F  M + G++P+ VT++ ++ +    G++EE  SL ++       P
Sbjct: 315 TYGKAGQLREASDTFAWMLREGIIPNTVTFNTMIHICGNHGQLEEAASLMQKMEELRCPP 374

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
           D   +++L  +  +  + D      ++MK   ++P+LV Y TLL A       G A  L 
Sbjct: 375 DTRTYNILISLHAKHNNIDRAASYFKKMKEARLEPDLVSYRTLLYAFSIRHLVGEAEILV 434

Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
            EM E GL  DE T +AL ++Y +A   K +  LW R    +  M    Y+  ++   + 
Sbjct: 435 SEMDERGLEIDEFTQSALTRMYIEAGMLKKSW-LWFRRFHLEGNMSSECYSANIDAYGER 493

Query: 411 GLVEEAERLF----EDMKLS------------------DYCK-----------PDNYSYT 437
           G + EAE+ F    E  KLS                    C+           PD +SY 
Sbjct: 494 GHILEAEKAFLCCKESRKLSVLEFNVMIKAYGISNRYEKACQLIDSMENHGVLPDKFSYN 553

Query: 438 AMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDR 497
           +++ I  S      A     +M E  +  + +    +I    K  +++    +F   I  
Sbjct: 554 SLIQILASADLPHKAKFYLMKMQETQLVSDCIPYCAVISSFIKLGQLEMAEGLFKEMIGY 613

Query: 498 GVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFL--NLIEDNS-------T 548
            V+PD  + G L++  +      DVG V   +   N    A L  N +  NS        
Sbjct: 614 NVQPDVVVYGILINAFA------DVGNVREAVNYVNALRNAGLPMNAVIYNSLIKLYTKV 667

Query: 549 GFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELL 593
           G+    +E   +++ +EV       NC+ID+   R++ ++A E+ 
Sbjct: 668 GYLEEAQEAYKMLQASEVGPDVYSSNCMIDLYSERSMVKQAEEIF 712



 Score = 97.4 bits (241), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/337 (21%), Positives = 153/337 (45%), Gaps = 38/337 (11%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           +NV +K+     +++   QL + M ++ +  D  +Y+++I      +L  +A  +  +M 
Sbjct: 517 FNVMIKAYGISNRYEKACQLIDSMENHGVLPDKFSYNSLIQILASADLPHKAKFYLMKMQ 576

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
           +T L+ D + Y A++  + K G++E    L+                             
Sbjct: 577 ETQLVSDCIPYCAVISSFIKLGQLEMAEGLF----------------------------- 607

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
                 +EM    VQP++VVY  L+ A    G    A +  + +  +GL  +     +LI
Sbjct: 608 ------KEMIGYNVQPDVVVYGILINAFADVGNVREAVNYVNALRNAGLPMNAVIYNSLI 661

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
           K+Y K  + ++A E ++ ++ ++   D    N ++++ ++  +V++AE +FE +K     
Sbjct: 662 KLYTKVGYLEEAQEAYKMLQASEVGPDVYSSNCMIDLYSERSMVKQAEEIFESLKRKG-- 719

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
             + +S+  ML +Y   G +  A ++ ++M ELG+  +++    ++       R  D V 
Sbjct: 720 DANEFSFAMMLCMYKRIGKLKEAFQIVQKMRELGLVTDLLSYNNVLGFYAMDGRFKDAVG 779

Query: 490 VFGVSIDRGVKPDDRLCGCLLSVVSLCET-SEDVGKV 525
            F   I+  ++PDD     L  V+  C    + VGK+
Sbjct: 780 TFKEMIEAAIQPDDCTFKSLGVVLVKCGIPKQAVGKL 816



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 101/224 (45%), Gaps = 6/224 (2%)

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
           N++ YN +L  +GKA K     SL+DEM+  G+TP   T   LI +Y K    ++AL   
Sbjct: 195 NVIHYNIMLRILGKARKWHHVESLWDEMMSRGITPVNSTYGTLIDVYSKGGLTEEALHWL 254

Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP----DNYSYTAMLN 441
           +RM +     D +    ++      G  ++AE+ F++  L    +P     +Y+Y  +++
Sbjct: 255 DRMNKQGMEPDEVTMGVVVQTYKKAGEFKKAEQFFKNWSLESASQPHVCLSSYTYNTLID 314

Query: 442 IYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
            YG  G +  A + F  M   G+  N +    +I   G   ++++   +     +    P
Sbjct: 315 TYGKAGQLREASDTFAWMLREGIIPNTVTFNTMIHICGNHGQLEEAASLMQKMEELRCPP 374

Query: 502 DDRLCGCLLSVVSLCETSEDVGKVITCLQQA--NPKLVAFLNLI 543
           D R    L+S+ +     +        +++A   P LV++  L+
Sbjct: 375 DTRTYNILISLHAKHNNIDRAASYFKKMKEARLEPDLVSYRTLL 418



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 60/277 (21%), Positives = 111/277 (40%), Gaps = 35/277 (12%)

Query: 148 IPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIE 207
           +P + +  + + IL S     K+ F+   ++   L   + I Y   + S     Q ++ E
Sbjct: 546 LPDKFSYNSLIQILASADLPHKAKFYLMKMQETQLVS-DCIPYCAVISSFIKLGQLEMAE 604

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
            L  EM+   ++ D + Y  +I          EA+ +   +   GL  + V Y++++ +Y
Sbjct: 605 GLFKEMIGYNVQPDVVVYGILINAFADVGNVREAVNYVNALRNAGLPMNAVIYNSLIKLY 664

Query: 268 AKSGKVEEVLSLYERGVASGWKPD----------------------------------PI 293
            K G +EE    Y+   AS   PD                                    
Sbjct: 665 TKVGYLEEAQEAYKMLQASEVGPDVYSSNCMIDLYSERSMVKQAEEIFESLKRKGDANEF 724

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
           +F+++  M+   G       ++Q+M+ LG+  +L+ YN +L      G+   A   F EM
Sbjct: 725 SFAMMLCMYKRIGKLKEAFQIVQKMRELGLVTDLLSYNNVLGFYAMDGRFKDAVGTFKEM 784

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
           +E+ + PD+ T  +L  +  K    K A+   E  R+
Sbjct: 785 IEAAIQPDDCTFKSLGVVLVKCGIPKQAVGKLEMTRK 821


>gi|410110093|gb|AFV61126.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           microcephala]
          Length = 440

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/295 (30%), Positives = 151/295 (51%), Gaps = 7/295 (2%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L +EM    +  D  TYST+IT   +  LFD A+ W ++M +  +  D V YS ++++  
Sbjct: 2   LFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSR 61

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           K     + +S++ R   SG+ PD +A++ +  +FG++  +   R ++ EMK+ GV PN  
Sbjct: 62  KLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTA 121

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            Y+TLL    +  K   A S+F EM E     D  T   +I +YG+   AK+A +L+  M
Sbjct: 122 SYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM 181

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
           R+     + + YNTLL +  D  L  EA  LF  M+  +  + +  +Y +M+ IYG    
Sbjct: 182 RKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKN-IEQNVVTYNSMMMIYGKTLE 240

Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF------GVSIDR 497
            + A  L +EM   G+  N +  + +I   GK  ++D    +F      G+ ID+
Sbjct: 241 HEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQ 295



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 83/367 (22%), Positives = 170/367 (46%), Gaps = 6/367 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K     P + + YN  +      + F+    L  EM +  +  +  +YS
Sbjct: 66  YSKAISIFSRLKRSGFTP-DLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTASYS 124

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY + G  +E   L+      
Sbjct: 125 TLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 184

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   ++ N+V YN+++   GK  +   A
Sbjct: 185 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKA 244

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R +   +D IL+ T++  
Sbjct: 245 NNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQILFQTMIVA 304

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K     +PDN      ++I    G ++ A  +F +  + G   
Sbjct: 305 YERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVK 359

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           ++     +I  L K ++  ++V VF      G  PD  +   +L+     +  +    V 
Sbjct: 360 DITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVY 419

Query: 527 TCLQQAN 533
             +Q+  
Sbjct: 420 MEMQEVG 426



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 97/220 (44%), Gaps = 1/220 (0%)

Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYG 373
           +  EM+   + P+   Y+TL+   GK G    A S   +M +  +  D    + LI++  
Sbjct: 2   LFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSR 61

Query: 374 KARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDN 433
           K      A+ ++ R++ + +  D + YN ++N+     L  EA  L  +MK +    P+ 
Sbjct: 62  KLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAG-VMPNT 120

Query: 434 YSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGV 493
            SY+ +L +Y        A+ +F EM E+   +++  C  +I   G+     +  ++F  
Sbjct: 121 ASYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWG 180

Query: 494 SIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN 533
               G++P+      LL V    E   +   +   +Q+ N
Sbjct: 181 MRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKN 220


>gi|297829236|ref|XP_002882500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328340|gb|EFH58759.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 99/418 (23%), Positives = 188/418 (44%), Gaps = 48/418 (11%)

Query: 144 AITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQF 203
           A++ +  +P  E  + +L  LK   ++  +F W + +   P     YN  +  +   R F
Sbjct: 55  ALSALNFKPQPEFVIGVLRRLKDVNRAIEYFRWYERRTELPHCPESYNSLLLVMARCRNF 114

Query: 204 QLIEQLANEM-VSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSA 262
             ++Q+  EM V+      N     +++C K  N   E  +  + M K    P    Y+ 
Sbjct: 115 DALDQILGEMSVAGFGPSVNTCIEMVLSCVK-ANKLREGFDVVQNMRKFKFRPAFSAYTT 173

Query: 263 ILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG 322
           ++  ++     + +L+L+++    G++P    F+ L + F + G  D    +L EMKS  
Sbjct: 174 LIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSS 233

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382
           +  ++V+YN  +++ GK GK  +A   F E+  +GL PDE T T++I +  KA    +A+
Sbjct: 234 LDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAV 293

Query: 383 ELWERMREN-KWPMDF----------------------------------ILYNTLLNMC 407
           E++E + +N + P  +                                  I YN +L   
Sbjct: 294 EMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCL 353

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
             +G V+EA R+FE+MK      P+  +Y  ++++    G +D A EL + M + G+  N
Sbjct: 354 RKMGKVDEALRVFEEMKKD--AAPNLSTYNILIDMLCRAGKLDCAFELRDSMQKAGLFPN 411

Query: 468 VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKV 525
           V     ++  L K++++D+   +F     +   PD+         ++ C   + +GKV
Sbjct: 412 VRTVNIMVDRLCKSQKLDEACAIFEQMDYKVCTPDE---------ITFCSLIDGLGKV 460



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 148/293 (50%), Gaps = 4/293 (1%)

Query: 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
            DEA   FE+M      PDE+T+ +++D   K G+V++   +YE+ + S  + + I ++ 
Sbjct: 428 LDEACAIFEQMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKIYEKMLDSDCRTNSIVYTS 487

Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
           L K F   G  +    + ++M +    P+L + NT ++ M KAG+P   R++F+E+    
Sbjct: 488 LIKNFFNHGRKEDGHKIYKDMVNQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKSRR 547

Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417
             PD ++ + LI    KA +A +  EL+  M+E    +D   YN +++     G V +A 
Sbjct: 548 FVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAY 607

Query: 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
           +L E+MK   + +P   +Y ++++       +D A  LFEE     + +NV+  + LI  
Sbjct: 608 QLLEEMKTKGF-EPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDG 666

Query: 478 LGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQ 530
            GK  RID+   +    + +G+ P+      LL  +     +E++ + + C Q
Sbjct: 667 FGKVGRIDEAYLILEELMQKGLTPNVYTWNSLLDALV---KAEEINEALVCFQ 716



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 142/313 (45%), Gaps = 2/313 (0%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           +K    F  IKS+   P +   Y++ +  L          +L   M      LD   Y+ 
Sbjct: 534 EKGRAMFEEIKSRRFVP-DARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNI 592

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           +I    +C   ++A +  E M   G  P  VTY +++D  AK  +++E   L+E   +  
Sbjct: 593 VIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKR 652

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
            + + + +S L   FG+ G  D    +L+E+   G+ PN+  +N+LL+A+ KA +   A 
Sbjct: 653 IELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNVYTWNSLLDALVKAEEINEAL 712

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
             F  M E   TP++ T   LI    K R    A   W+ M++       I Y T+++  
Sbjct: 713 VCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGL 772

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
           A  G + EA  LF+  K ++   PD+  Y AM+    +G    +A  LFEE    G+ I+
Sbjct: 773 AKAGNIAEAGALFDRFK-ANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGLHIH 831

Query: 468 VMGCTCLIQCLGK 480
              C  L+  L K
Sbjct: 832 NKTCVVLLDTLHK 844



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 144/320 (45%), Gaps = 1/320 (0%)

Query: 212 EMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG 271
           E+ S     D  +YS +I    +    +E  E F  M + G + D   Y+ ++D + K G
Sbjct: 542 EIKSRRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCG 601

Query: 272 KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYN 331
           KV +   L E     G++P  + +  +     +    D    + +E KS  ++ N+V+Y+
Sbjct: 602 KVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYS 661

Query: 332 TLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN 391
           +L++  GK G+   A  + +E+++ GLTP+  T  +L+    KA    +AL  ++ M+E 
Sbjct: 662 SLIDGFGKVGRIDEAYLILEELMQKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEL 721

Query: 392 KWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDN 451
           K   + + Y  L+N    +    +A   +++M+     KP   SYT M++     GN+  
Sbjct: 722 KCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGM-KPSTISYTTMISGLAKAGNIAE 780

Query: 452 AIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
           A  LF+     G   +      +I+ L    R  D   +F  +  RG+   ++ C  LL 
Sbjct: 781 AGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGLHIHNKTCVVLLD 840

Query: 512 VVSLCETSEDVGKVITCLQQ 531
            +   +  E    V   L++
Sbjct: 841 TLHKNDCLEQAAIVGAVLRE 860



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/226 (19%), Positives = 97/226 (42%), Gaps = 9/226 (3%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSL----RFGRQFQLIEQLANEMVSNEIELDNIT 224
           ++Y  F   KS+ +  +  + Y+  +       R    + ++E+L  + ++  +     T
Sbjct: 640 EAYMLFEEAKSKRI-ELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNV----YT 694

Query: 225 YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
           +++++    +    +EA+  F+ M +    P++VTY  +++   K  K  +    ++   
Sbjct: 695 WNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQ 754

Query: 285 ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344
             G KP  I+++ +     ++G+      +    K+ G  P+   YN ++E +    +  
Sbjct: 755 KQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAM 814

Query: 345 LARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
            A SLF+E    GL    KT   L+    K    + A  +   +RE
Sbjct: 815 DAFSLFEETRRRGLHIHNKTCVVLLDTLHKNDCLEQAAIVGAVLRE 860


>gi|297737746|emb|CBI26947.3| unnamed protein product [Vitis vinifera]
          Length = 1078

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 107/390 (27%), Positives = 186/390 (47%), Gaps = 14/390 (3%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           K++  F+ ++S  LFP   + YN  +  L    + ++ +QL  EM++  I  D +TY+ +
Sbjct: 392 KAFLLFDELRSIYLFP-TIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTIL 450

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
           +  + +      A E+F+ M   GL  D   Y+  +    K G      SL E  +A G+
Sbjct: 451 VNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGF 510

Query: 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348
            PD I ++V+     + G+ +    +LQ+M S GV P+ V Y +++ A  + G+    R 
Sbjct: 511 PPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGRE 570

Query: 349 LFDEMVESGLTPDEKTLTALIKIY-GKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
           +F EM+  GLTP   T T LI  + GK R  + A   +  M+E     + I YN+L+N  
Sbjct: 571 IFYEMLSKGLTPSVVTYTVLIHGHAGKGRLER-AFIYFSEMQEKGILPNVITYNSLINGL 629

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
             +  +++A   F +M +     P+ YSYT ++N   + GN   A+ L+++M + GV  +
Sbjct: 630 CKVRRMDQAYNFFAEM-VEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQPD 688

Query: 468 VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD--DRLCGCLLSVVSLCETSEDVGKV 525
               + L++ LGK  +   L  V G S     K D   +  G   ++ S+   +E+    
Sbjct: 689 SCTHSALLKQLGKDCK---LQAVHGTSTMPTAKVDLLSQTVGAATALTSVSSIAENGHIT 745

Query: 526 ITCLQQANPKLVAFLN-----LIEDNSTGF 550
              L+Q  P    F++     LI +   G+
Sbjct: 746 KEQLRQNIPTKKQFVDPYRQGLIVEGGVGY 775



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 90/385 (23%), Positives = 161/385 (41%), Gaps = 71/385 (18%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           + YNV +  L    +F+  + L  EM+   +++   TY+ +I       +  EA+   E 
Sbjct: 270 VTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEE 329

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M   G  P   TY++ +    K G++ + +      +A+   PD ++++ L   +   G+
Sbjct: 330 MVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGN 389

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
                 +  E++S+ + P +V YNTLL+ + + G+  +A+ L  EM+  G+ PD  T T 
Sbjct: 390 LMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTI 449

Query: 368 LI---------------------------------KIYGKARWAKD--ALELWERMRENK 392
           L+                                 +I G+ +      A  L E M    
Sbjct: 450 LVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKG 509

Query: 393 WPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN----------- 441
           +P D I+YN +++    +G +EEA  L + M +SD   PD  +YT++++           
Sbjct: 510 FPPDLIIYNVVVDGLCKLGNLEEASELLQKM-VSDGVIPDYVTYTSIIHAHLENGRLRKG 568

Query: 442 ----------------------IYGSGGN--VDNAIELFEEMSELGVAINVMGCTCLIQC 477
                                 I+G  G   ++ A   F EM E G+  NV+    LI  
Sbjct: 569 REIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLING 628

Query: 478 LGKARRIDDLVRVFGVSIDRGVKPD 502
           L K RR+D     F   +++G+ P+
Sbjct: 629 LCKVRRMDQAYNFFAEMVEKGIFPN 653



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 125/531 (23%), Positives = 225/531 (42%), Gaps = 55/531 (10%)

Query: 72  SSTTLSPTKNDRTPLL-----SKPKSTWVNPTKPRRSVLSLQ-------RQKRSTYS--- 116
           +S T++PT++ +  LL     S   ST  N + P  S    Q       R+K S +S   
Sbjct: 10  ASATINPTRSIKVRLLFPCSFSFHDST-SNHSAPPFSETHFQDVISKSIREKPSNFSNYY 68

Query: 117 -----YNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTRENA-------LLILNSL 164
                + P + D  LF R L+    +    LR       QP    +       L IL   
Sbjct: 69  WLSHQFGPVIVDPDLFVRVLSSFRTSPRMALRLFRWAESQPGFRRSEFVFCAILEILAQN 128

Query: 165 KFWQKSYFFFNWIKSQNLFPMETIFYN------VTMKSLRF----GRQFQLIEQ---LAN 211
              + +Y+    + + N+  +  +         V++K L        +  ++EQ   + +
Sbjct: 129 NLMRSAYWVMERVINANMHRIVDVLIGGCVSSEVSVKILDLLIWVYSKKSMVEQCLSVFD 188

Query: 212 EMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG 271
           +M+ + +  D    + I+   +  +L  +A+E +  M + G+ P  VTY+ +LD Y K G
Sbjct: 189 KMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNTLLDSYCKGG 248

Query: 272 KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYN 331
           KV++ L L       G  P+ + ++VL     + G+++  + ++ EM   G++ +   YN
Sbjct: 249 KVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYN 308

Query: 332 TLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAK--DALELWERMR 389
            L+      G    A SL +EMV  G +P   T  +   IYG  +  +  DA++    M 
Sbjct: 309 PLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSF--IYGLCKLGRMSDAMQQLSDML 366

Query: 390 ENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNV 449
            N    D + YNTL+     +G + +A  LF++++ S Y  P   +Y  +L+     G +
Sbjct: 367 ANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELR-SIYLFPTIVTYNTLLDGLCRQGEL 425

Query: 450 DNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD-----R 504
           + A +L  EM   G+A +++  T L+    K   +      F   +  G++ D      R
Sbjct: 426 EVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATR 485

Query: 505 LCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKE 555
           + G L     L +TS         L +  P  +   N++ D      N++E
Sbjct: 486 IVGEL----KLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEE 532



 Score = 43.9 bits (102), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 28/111 (25%), Positives = 56/111 (50%), Gaps = 5/111 (4%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           ++++ +F+ ++ + + P   I YN  +  L   R+         EMV   I  +  +Y+ 
Sbjct: 601 ERAFIYFSEMQEKGILP-NVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTI 659

Query: 228 IITCAKRCNL--FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV 276
           +I   + CN+  + EA+  +++M   G+ PD  T+SA+L    K  K++ V
Sbjct: 660 LIN--ENCNMGNWQEALSLYKQMLDRGVQPDSCTHSALLKQLGKDCKLQAV 708


>gi|359490016|ref|XP_002275236.2| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
           chloroplastic-like [Vitis vinifera]
          Length = 1442

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/300 (29%), Positives = 150/300 (50%), Gaps = 9/300 (3%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           +L NE+  + I+ D ITY+T+I+   R +  +EA++ +  M      PD  TY+A++ VY
Sbjct: 280 ELLNEVRRSGIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVY 339

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            + G   E   L++   + G+ PD + ++ L   F   G+ D ++ + ++M  +G   + 
Sbjct: 340 GRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDE 399

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
           + YNT++   GK G+  LA  L+ +M  SG +PD  T T LI   GKA   K+A E+   
Sbjct: 400 MTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSE 459

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           M   +       ++ L+   A  G   EAE  F+ M L    KPD+ +Y+ ML+I     
Sbjct: 460 MLNARVKPTLRTFSALICGYAKAGKRVEAEETFDCM-LRSGIKPDHLAYSVMLDILLRFN 518

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCG 507
               A++L++EM       +      +++ LGK  R +D+ +V        VK  + LCG
Sbjct: 519 ESGKAMKLYQEMVLHSFKPDHALYEVMLRVLGKENREEDVHKV--------VKDMEELCG 570



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 85/327 (25%), Positives = 164/327 (50%), Gaps = 4/327 (1%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
             N ++   + P + I YN  + +       +   ++ N+MV++  + D  TY+ +I+  
Sbjct: 281 LLNEVRRSGIQP-DIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVY 339

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            RC +  EA   F+ +   G +PD VTY+++L  +A+ G V++V  + E  V  G+  D 
Sbjct: 340 GRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDE 399

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           + ++ +  M+G+ G +D    +  +MK  G  P+ V Y  L++++GKA     A  +  E
Sbjct: 400 MTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSE 459

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M+ + + P  +T +ALI  Y KA    +A E ++ M  +    D + Y+ +L++      
Sbjct: 460 MLNARVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRFNE 519

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
             +A +L+++M L  + KPD+  Y  ML + G     ++  ++ ++M EL    + + C+
Sbjct: 520 SGKAMKLYQEMVLHSF-KPDHALYEVMLRVLGKENREEDVHKVVKDMEELCGMNSQVICS 578

Query: 473 CLI--QCLGKARRIDDLVRVFGVSIDR 497
            L+  +C   A  +  L    G  +DR
Sbjct: 579 ILVKGECFDHAANMLRLAISQGCELDR 605



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 80/344 (23%), Positives = 163/344 (47%), Gaps = 3/344 (0%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLF--DEAIEWFER 247
           YN  M       +F  +++L + M S   E D ++++T+I    +      + AIE    
Sbjct: 225 YNAMMGVYARTGRFTKVQELLDLMRSRGCEPDLVSFNTLINARLKSGTMVTNLAIELLNE 284

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           + ++G+ PD +TY+ ++   ++   +EE + +Y   VA   +PD   ++ +  ++G  G 
Sbjct: 285 VRRSGIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGM 344

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
                 + ++++S G  P+ V YN+LL A  + G     + + ++MV+ G   DE T   
Sbjct: 345 SREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNT 404

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           +I +YGK      A +L+  M+ +    D + Y  L++      +++EA  +  +M L+ 
Sbjct: 405 IIHMYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEM-LNA 463

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
             KP   +++A++  Y   G    A E F+ M   G+  + +  + ++  L +       
Sbjct: 464 RVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRFNESGKA 523

Query: 488 VRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ 531
           ++++   +    KPD  L   +L V+      EDV KV+  +++
Sbjct: 524 MKLYQEMVLHSFKPDHALYEVMLRVLGKENREEDVHKVVKDMEE 567



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 148/289 (51%), Gaps = 9/289 (3%)

Query: 226 STIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVA 285
           +TI++   + N    A+E F R         +V Y+A++ VYA++G+  +V  L +   +
Sbjct: 192 ATILSVLGKANQEALAVEIFARAEAASGNTVQV-YNAMMGVYARTGRFTKVQELLDLMRS 250

Query: 286 SGWKPDPIAFSVLGKMFGESGDY--DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
            G +PD ++F+ L     +SG    +    +L E++  G+QP+++ YNTL+ A  +    
Sbjct: 251 RGCEPDLVSFNTLINARLKSGTMVTNLAIELLNEVRRSGIQPDIITYNTLISACSRESNL 310

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
             A  ++++MV     PD  T  A+I +YG+   +++A  L++ +    +  D + YN+L
Sbjct: 311 EEAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSREAGRLFKDLESKGFLPDAVTYNSL 370

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           L   A  G V++ + + EDM    + K D  +Y  ++++YG  G  D A +L+ +M   G
Sbjct: 371 LYAFAREGNVDKVKEICEDMVKMGFGK-DEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSG 429

Query: 464 VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR-----LCG 507
            + + +  T LI  LGKA  I +   V    ++  VKP  R     +CG
Sbjct: 430 RSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNARVKPTLRTFSALICG 478



 Score =  103 bits (256), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 102/473 (21%), Positives = 203/473 (42%), Gaps = 7/473 (1%)

Query: 232  AKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291
            A   N+F E  + ++ M   G  P    Y  ++ + AK  +V +V ++      + +KPD
Sbjct: 863  AHAGNIF-EVKKIYQGMKAAGYFPTMHLYRIMIGLLAKGKRVRDVEAMVSEMEVARFKPD 921

Query: 292  PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
               ++ + K++   GD+     V Q ++  G++P+   YNTL+    +  +P    SL  
Sbjct: 922  LSIWNSVLKLYTGIGDFKKTGQVYQLIQEAGLKPDEDTYNTLILMYCRDRRPEEGLSLMH 981

Query: 352  EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411
            EM   GL P   T  +LI  +GK +  + A EL+E +   +  +D   Y+ ++ M  + G
Sbjct: 982  EMRRVGLEPKLDTYKSLISAFGKLQMVEQAEELFEGLLSKECKLDRSFYHIMMKMFRNSG 1041

Query: 412  LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC 471
               +AE+L   MK +   +P   +   ++  Y   G  + A ++ + +   G+ ++ +  
Sbjct: 1042 NHSKAEKLLGVMKEAG-VEPTIATMHLLMVSYSGSGQPEEAEKVLDNLKVEGLPLSTLPY 1100

Query: 472  TCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ 531
            + +I    K    +  ++        G++PD R+  C +   SL + + +   ++  L+ 
Sbjct: 1101 SSVIDAYLKNGDHNVAIQKLMEMKKDGLEPDHRIWTCFVRAASLSQHTSEAIVLLKALRD 1160

Query: 532  ANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHE 591
                L   + L+ + S    +  +     +   E +A   F N L D+     L   A  
Sbjct: 1161 TGFDLP--IRLLTEKSDSLVSEVDNCLEKLGPLEDNAAFNFVNALEDLLWAFELRATASW 1218

Query: 592  LLYLGTLYGLY-PGLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAKIVLREEVL-PQL 649
            +  L     +Y   +      +W  D R +S G+A   L  W+  +    L+   L P+ 
Sbjct: 1219 VFQLAVKRSIYRHDVFRVAEKDWGADFRKMSAGSALVGLTLWLDHMQDASLQGYPLSPKS 1278

Query: 650  FLAETGTGTHKFSQGLATAFASHVNKLAAPFRQSEGKAGCFVATREDLVSWVQ 702
             +  TGT  +     L +   + + ++ +PF   + ++G  VA    L  W++
Sbjct: 1279 VVLITGTAEYNMVS-LNSTLKAFLWEMGSPFLPCKTRSGLLVAKAHSLRMWLK 1330



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/330 (23%), Positives = 146/330 (44%), Gaps = 34/330 (10%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + Y V + SL      +   ++ +EM++  ++    T+S +I    +     EA E F
Sbjct: 433 DAVTYTVLIDSLGKANMIKEAAEVMSEMLNARVKPTLRTFSALICGYAKAGKRVEAEETF 492

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           + M ++G+ PD + YS +LD+  +  +  + + LY+  V   +KPD   + V+ ++ G+ 
Sbjct: 493 DCMLRSGIKPDHLAYSVMLDILLRFNESGKAMKLYQEMVLHSFKPDHALYEVMLRVLGKE 552

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTL-------------------------------L 334
              + +  V+++M+ L    + V+ + L                               L
Sbjct: 553 NREEDVHKVVKDMEELCGMNSQVICSILVKGECFDHAANMLRLAISQGCELDRENLLSIL 612

Query: 335 EAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE-NKW 393
            + G +G+   AR L D + E      +    ALI +  KA    DAL  + + R+   +
Sbjct: 613 GSYGSSGRHLEARELLDFLREHSSGSHQLINEALIIMLCKAHQLGDALREYGKARDFGLF 672

Query: 394 PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAI 453
              F +Y +LL  C +  L  EA ++F DM+     +P ++ Y +M+  Y   G  + A 
Sbjct: 673 CGSFTMYESLLLCCEENELFAEASQIFSDMRFYG-VEPSDHLYRSMVVTYCKMGFPETAH 731

Query: 454 ELFEEMSELGVAI-NVMGCTCLIQCLGKAR 482
            L ++  E G+   +V   T +I+  GK +
Sbjct: 732 YLIDQAEEKGLLFDDVSIHTGVIEAYGKLK 761



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 67/297 (22%), Positives = 134/297 (45%), Gaps = 7/297 (2%)

Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL-TALIKIY 372
           +  +M+  GV+P+  +Y +++    K G P  A  L D+  E GL  D+ ++ T +I+ Y
Sbjct: 698 IFSDMRFYGVEPSDHLYRSMVVTYCKMGFPETAHYLIDQAEEKGLLFDDVSIHTGVIEAY 757

Query: 373 GKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPD 432
           GK +  + A  L   +R+    +D  ++N L++  A  G  E A  +F  M + D   P 
Sbjct: 758 GKLKLWQKAESLVGSLRQKCTMVDRKVWNALIHAYAASGCYERARAIFNTM-MRDGPSPT 816

Query: 433 NYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFG 492
             S   ++      G +D    + +E+ ++G  I+    T ++     A  I ++ +++ 
Sbjct: 817 VDSVNGLMQALIVDGRLDELYVVIQELQDMGFKISKSSITLMLDAFAHAGNIFEVKKIYQ 876

Query: 493 VSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKL-VAFLNLIEDNSTGFE 551
                G  P   L   ++ +++  +   DV  +++ ++ A  K  ++  N +    TG  
Sbjct: 877 GMKAAGYFPTMHLYRIMIGLLAKGKRVRDVEAMVSEMEVARFKPDLSIWNSVLKLYTGIG 936

Query: 552 NIKE--EFRNVIKDTEVDARRPFCNCLIDI-CRNRNLNERAHELLYLGTLYGLYPGL 605
           + K+  +   +I++  +       N LI + CR+R   E    L++     GL P L
Sbjct: 937 DFKKTGQVYQLIQEAGLKPDEDTYNTLILMYCRDRR-PEEGLSLMHEMRRVGLEPKL 992



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 82/175 (46%), Gaps = 7/175 (4%)

Query: 200  GRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVT 259
            G+ +QLI++         ++ D  TY+T+I    R    +E +     M + GL P   T
Sbjct: 942  GQVYQLIQEAG-------LKPDEDTYNTLILMYCRDRRPEEGLSLMHEMRRVGLEPKLDT 994

Query: 260  YSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMK 319
            Y +++  + K   VE+   L+E  ++   K D   + ++ KMF  SG++     +L  MK
Sbjct: 995  YKSLISAFGKLQMVEQAEELFEGLLSKECKLDRSFYHIMMKMFRNSGNHSKAEKLLGVMK 1054

Query: 320  SLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK 374
              GV+P +   + L+ +   +G+P  A  + D +   GL       +++I  Y K
Sbjct: 1055 EAGVEPTIATMHLLMVSYSGSGQPEEAEKVLDNLKVEGLPLSTLPYSSVIDAYLK 1109



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 88/215 (40%), Gaps = 37/215 (17%)

Query: 325 PNLVVYNTLLEAMGKAGKPGLARSLF---------------------------------- 350
           PN  +  T+L  +GKA +  LA  +F                                  
Sbjct: 186 PNARMLATILSVLGKANQEALAVEIFARAEAASGNTVQVYNAMMGVYARTGRFTKVQELL 245

Query: 351 DEMVESGLTPDEKTLTALI--KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCA 408
           D M   G  PD  +   LI  ++         A+EL   +R +    D I YNTL++ C+
Sbjct: 246 DLMRSRGCEPDLVSFNTLINARLKSGTMVTNLAIELLNEVRRSGIQPDIITYNTLISACS 305

Query: 409 DIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINV 468
               +EEA +++ DM ++  C+PD ++Y AM+++YG  G    A  LF+++   G   + 
Sbjct: 306 RESNLEEAVKVYNDM-VAHRCQPDLWTYNAMISVYGRCGMSREAGRLFKDLESKGFLPDA 364

Query: 469 MGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
           +    L+    +   +D +  +    +  G   D+
Sbjct: 365 VTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDE 399


>gi|413952776|gb|AFW85425.1| chloroplast RNA splicing4 [Zea mays]
          Length = 1435

 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 125/239 (52%), Gaps = 1/239 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D ITY+T+I+   + +  ++A+  FE M  +   PD  TY+A++ V+ + GK EE   L+
Sbjct: 292 DVITYNTLISACSQSSNLEDAVTVFEDMIASECRPDLWTYNAMVSVHGRCGKAEEAERLF 351

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
              V  G+ PD I ++ L   F + G+ D + +  +++   G + N + YNT++   GK 
Sbjct: 352 RELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEITYNTMIHMYGKM 411

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G+  LA  L+DEM   G TPD  T T +I   GK     +A ++ E M +       I +
Sbjct: 412 GRLDLAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVLEDMTDAGLKPTLIAF 471

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           + L+   A  G   +AE  F+ M ++   KPD  +Y  ML+++   G+ +  + L+ +M
Sbjct: 472 SALICAYAKGGRRADAENTFDCM-IASGVKPDRLAYLVMLDVFARSGDTEKMLCLYRKM 529



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/354 (24%), Positives = 174/354 (49%), Gaps = 8/354 (2%)

Query: 177 IKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCN 236
           ++   L P + I YN  + +       +    +  +M+++E   D  TY+ +++   RC 
Sbjct: 284 VRQSGLRP-DVITYNTLISACSQSSNLEDAVTVFEDMIASECRPDLWTYNAMVSVHGRCG 342

Query: 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS 296
             +EA   F  + + G MPD +TY+++L  +AK G V++V    E+ V +G+K + I ++
Sbjct: 343 KAEEAERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEITYN 402

Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356
            +  M+G+ G  D    +  EM+++G  P+ V Y  +++++GK  +   A  + ++M ++
Sbjct: 403 TMIHMYGKMGRLDLAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVLEDMTDA 462

Query: 357 GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEA 416
           GL P     +ALI  Y K     DA   ++ M  +    D + Y  +L++ A  G  E+ 
Sbjct: 463 GLKPTLIAFSALICAYAKGGRRADAENTFDCMIASGVKPDRLAYLVMLDVFARSGDTEKM 522

Query: 417 ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINV-MGCTCLI 475
             L+  M ++D  +PD+  Y  +L         +   E+ ++M EL   +N+ +  T LI
Sbjct: 523 LCLYRKM-MNDNYRPDDDMYQVLLVALAKEDKCEEIEEVIQDM-ELLCRMNLGIISTMLI 580

Query: 476 QCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCL 529
               KAR +    ++   +  +G KPD +    +++   + E  E+   ++ C+
Sbjct: 581 ----KARCVSQGAKLLKKACLQGYKPDIKSLRSIMNAYVMTEKHEEGLSLLECI 630



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/339 (22%), Positives = 163/339 (48%), Gaps = 3/339 (0%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKR--CNLFDEAIEWFER 247
           +N  M       +F    QL + M    I+ D ++++T+I    +  C     A++    
Sbjct: 224 FNAMMGVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINARSKSGCLAAGVALDLLFE 283

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           + ++GL PD +TY+ ++   ++S  +E+ ++++E  +AS  +PD   ++ +  + G  G 
Sbjct: 284 VRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEDMIASECRPDLWTYNAMVSVHGRCGK 343

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
            +    + +E+   G  P+ + YN+LL A  K G         +++V++G   +E T   
Sbjct: 344 AEEAERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEITYNT 403

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           +I +YGK      A+ L++ MR      D + Y  +++    +  + EA ++ EDM  + 
Sbjct: 404 MIHMYGKMGRLDLAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVLEDMTDAG 463

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
             KP   +++A++  Y  GG   +A   F+ M   GV  + +    ++    ++   + +
Sbjct: 464 L-KPTLIAFSALICAYAKGGRRADAENTFDCMIASGVKPDRLAYLVMLDVFARSGDTEKM 522

Query: 488 VRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           + ++   ++   +PDD +   LL  ++  +  E++ +VI
Sbjct: 523 LCLYRKMMNDNYRPDDDMYQVLLVALAKEDKCEEIEEVI 561



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 114/544 (20%), Positives = 233/544 (42%), Gaps = 26/544 (4%)

Query: 173  FFNWIKSQNLFPMETIFYNVTMKSL----RFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
            F N IK+  L  ++++  N  M++L    R    + ++E+L +           I+ ST+
Sbjct: 803  FDNMIKTGPLPTVDSV--NGMMRALIVDGRLDELYVVVEELQDMNF-------KISKSTV 853

Query: 229  I----TCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
            +      AK  ++F E ++ +  M   G +P+   Y +++ +     +  +V  +     
Sbjct: 854  LLLLDAFAKAGDVF-EVMKIYNGMKAAGYLPNMHLYRSMISLLCHHNRFRDVELMIAEME 912

Query: 285  ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344
             +G+KPD    + L  M+  +G++D    V + +   G++P+   YNTL+    ++ +P 
Sbjct: 913  GAGFKPDLAILNALLNMYTAAGNFDRTTQVYRSILEAGLEPDEDTYNTLIVMYCRSFRPE 972

Query: 345  LARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
               +L +EM + GLTP  ++  +L+    KA   + A +++E MR   + ++  +Y+ ++
Sbjct: 973  EGFTLLNEMGKRGLTPKLQSYKSLLAASAKAELREQADQIFEEMRSKSYQLNRSIYHMMM 1032

Query: 405  NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
             +  + G   +AE L   MK  D  +P   +   ++  YG+ G    A  +   +    +
Sbjct: 1033 KIYRNAGNHSKAENLLAVMK-EDGIEPTIATMHILMTSYGTAGQPREAENVLNNLKSSSL 1091

Query: 465  AINVMGCTCLIQC-LGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVG 523
             ++ +  + +    L          ++  +  D GV+PD ++  C +   SLCE + D  
Sbjct: 1092 EVSTLPYSTVFDAYLKNGDYNHGTTKLLEMKRD-GVEPDHQVWTCFIRAASLCEQTADAI 1150

Query: 524  KVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNR 583
             ++  LQ     L   + L+ + +    +    +   ++  E  A   F N + D+    
Sbjct: 1151 LLLKSLQDCGFDLP--IRLLTERTPSLLSEIANYLEELEALEDSAALNFVNAVEDLLWAF 1208

Query: 584  NLNERAHELLYLGTLYGLY-PGLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAKIVLR 642
                 A  +  L     +Y   +      +W  D R LS GAA   L  W+  +    L+
Sbjct: 1209 ECRATASRIFQLAVERSIYRDNVFRVAQKDWGADFRKLSAGAALVGLTLWLDHMQDASLQ 1268

Query: 643  -EEVLPQLFLAETGTGTHKFSQGLATAFASHVNKLAAPFRQSEGKAGCFVATREDLVSWV 701
                 P+  +  TG G +     L     +++ ++ +PF     ++G FV     L  W+
Sbjct: 1269 GSPESPKSVVLVTGEGEYNMVS-LRKTIRAYLLEMGSPFLPCRARSGRFVVKDYSLKMWL 1327

Query: 702  QARP 705
            +  P
Sbjct: 1328 KDSP 1331



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 139/308 (45%), Gaps = 11/308 (3%)

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           +A EW  R       P     + +L V  ++ +      ++ R    G       F+ + 
Sbjct: 175 DAFEWLAR----SSAPASRAVAVVLGVLGRARQDSIAEEVFLRFAGEGATVQ--VFNAMM 228

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG--KPGLARSLFDEMVESG 357
            ++  SG +D  R +L  M   G+ P+LV +NTL+ A  K+G    G+A  L  E+ +SG
Sbjct: 229 GVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINARSKSGCLAAGVALDLLFEVRQSG 288

Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417
           L PD  T   LI    ++   +DA+ ++E M  ++   D   YN ++++    G  EEAE
Sbjct: 289 LRPDVITYNTLISACSQSSNLEDAVTVFEDMIASECRPDLWTYNAMVSVHGRCGKAEEAE 348

Query: 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
           RLF ++    +  PD  +Y ++L  +   GNVD      E++ + G   N +    +I  
Sbjct: 349 RLFRELVEKGFM-PDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEITYNTMIHM 407

Query: 478 LGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PK 535
            GK  R+D  V ++      G  PD      ++  +       + GKV+  +  A   P 
Sbjct: 408 YGKMGRLDLAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVLEDMTDAGLKPT 467

Query: 536 LVAFLNLI 543
           L+AF  LI
Sbjct: 468 LIAFSALI 475



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 67/347 (19%), Positives = 136/347 (39%), Gaps = 36/347 (10%)

Query: 225  YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
            Y  +ITC      F EA + F  M   G+   +  Y +I+  Y K G  E    L +  +
Sbjct: 678  YEYLITCLIEAEFFSEACQVFCDMQFIGIEASKSIYESIISTYCKLGFPETAHRLMDDAL 737

Query: 285  ASG---------------------WKPDPI--------------AFSVLGKMFGESGDYD 309
             SG                     W+   I               ++ L   + ESG Y+
Sbjct: 738  QSGIPLNILSCRVIIIEAYGKIKLWQQAEILVKGLRQASGIDRRIWNALIHAYAESGLYE 797

Query: 310  GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
              R V   M   G  P +   N ++ A+   G+      + +E+ +      + T+  L+
Sbjct: 798  KARAVFDNMIKTGPLPTVDSVNGMMRALIVDGRLDELYVVVEELQDMNFKISKSTVLLLL 857

Query: 370  KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
              + KA    + ++++  M+   +  +  LY +++++        + E +  +M+ + + 
Sbjct: 858  DAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRSMISLLCHHNRFRDVELMIAEMEGAGF- 916

Query: 430  KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
            KPD     A+LN+Y + GN D   +++  + E G+  +      LI    ++ R ++   
Sbjct: 917  KPDLAILNALLNMYTAAGNFDRTTQVYRSILEAGLEPDEDTYNTLIVMYCRSFRPEEGFT 976

Query: 490  VFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKL 536
            +      RG+ P  +    LL+  +  E  E   ++   ++  + +L
Sbjct: 977  LLNEMGKRGLTPKLQSYKSLLAASAKAELREQADQIFEEMRSKSYQL 1023


>gi|147771903|emb|CAN75708.1| hypothetical protein VITISV_031421 [Vitis vinifera]
          Length = 1313

 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 167/358 (46%), Gaps = 3/358 (0%)

Query: 221  DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
            D + Y+ ++    +  L+D+A   F+ M   G  P+E TY++++ +++    V+E   + 
Sbjct: 858  DVVEYNVMVKAYGKAKLYDKAFSLFKGMRNHGTWPNESTYNSLIQMFSGGDLVDEARDIL 917

Query: 281  ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
                  G+KP  + FS +   +   G       V +EM  LGV+PN VVY +L+    + 
Sbjct: 918  AEMQKMGFKPQCLTFSAVIACYARLGRLPDAVGVYEEMVRLGVKPNEVVYGSLINGFSET 977

Query: 341  GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
            G    A   F +M E G++ ++  LT+LIK Y K    + A  L+E M++ +   D +  
Sbjct: 978  GNVEEALCYFRKMDEFGISANQIVLTSLIKAYSKVGCLEGAKTLYEGMKDLEGGPDIVAS 1037

Query: 401  NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
            N+++N+ AD+GLV EA+ +F+D++       D  S+  M+ +Y + G +D AI++ +EM 
Sbjct: 1038 NSMINLYADLGLVSEAKLIFDDLRQKG--SADGVSFATMMYLYKNLGMLDEAIDVADEMK 1095

Query: 461  ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCET-S 519
            + G   +      ++ C     ++     +    I R + PD      + +V+      +
Sbjct: 1096 QSGFLRDCASFNKVMACYATNGQLSACGELLHEMISRRILPDTGTFKVMFTVLKKGGLPT 1155

Query: 520  EDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLI 577
            E V ++ +  Q+  P     +     ++ G      E      + EVD    F N  I
Sbjct: 1156 EAVTQLESSYQEGKPYARQAVITSVFSTVGLHAFALESCETFLNAEVDLDSSFYNVAI 1213



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 81/412 (19%), Positives = 163/412 (39%), Gaps = 67/412 (16%)

Query: 165  KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNIT 224
            K + K++  F  +++   +P E+  YN  ++    G        +  EM     +   +T
Sbjct: 873  KLYDKAFSLFKGMRNHGTWPNEST-YNSLIQMFSGGDLVDEARDILAEMQKMGFKPQCLT 931

Query: 225  YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
            +S +I C  R     +A+  +E M + G+ P+EV Y ++++ ++++G VEE L  + +  
Sbjct: 932  FSAVIACYARLGRLPDAVGVYEEMVRLGVKPNEVVYGSLINGFSETGNVEEALCYFRKMD 991

Query: 285  ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344
              G   + I  + L K + + G  +G + + + MK L   P++V  N+++      G   
Sbjct: 992  EFGISANQIVLTSLIKAYSKVGCLEGAKTLYEGMKDLEGGPDIVASNSMINLYADLGLVS 1051

Query: 345  LARSLF----------------------------------DEMVESGLTPDEKTLTALIK 370
             A+ +F                                  DEM +SG   D  +   ++ 
Sbjct: 1052 EAKLIFDDLRQKGSADGVSFATMMYLYKNLGMLDEAIDVADEMKQSGFLRDCASFNKVMA 1111

Query: 371  IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEA-------------- 416
             Y          EL   M   +   D   +  +  +    GL  EA              
Sbjct: 1112 CYATNGQLSACGELLHEMISRRILPDTGTFKVMFTVLKKGGLPTEAVTQLESSYQEGKPY 1171

Query: 417  ------ERLFEDMKLSDY----CKP--------DNYSYTAMLNIYGSGGNVDNAIELFEE 458
                    +F  + L  +    C+         D+  Y   +  YG+ G++D A+++F +
Sbjct: 1172 ARQAVITSVFSTVGLHAFALESCETFLNAEVDLDSSFYNVAIYAYGASGSIDKALKMFMK 1231

Query: 459  MSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
            M + G+  +++    L  C GKA  ++ L R++     R ++P++ L   ++
Sbjct: 1232 MQDEGLEPDLVTYINLAGCYGKAGMLEGLKRIYSQLKYREIEPNESLFKAII 1283



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 91/478 (19%), Positives = 181/478 (37%), Gaps = 95/478 (19%)

Query: 159 LILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEI 218
           +IL     W++    F WIKSQ  +    I YNV ++ L   +++  +     EM  N +
Sbjct: 461 VILKEQSSWERVLRVFEWIKSQEDYVPNVIHYNVVLRVLGRAQKWDELRLCWIEMAKNGV 520

Query: 219 ELDNITYSTIITCAKRCNLFDEAI-------------------------------EWFER 247
              N TY  ++    +  L  EA+                               +W +R
Sbjct: 521 LPTNNTYGMLVDVYGKAGLVKEALLWIKHMKLRGVFPDEVTMNTVVRVLKDAGEFDWADR 580

Query: 248 MYK-----------------------TGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
            Y+                        G  P  + +    +++   G+   + ++ +   
Sbjct: 581 FYRDWCVGKVELGDFDLESVADSDDEIGSAPVSLKHFLSTELFKIGGR-RPISNIMDSSN 639

Query: 285 ASGWKPDP---IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG 341
             G +  P     ++ L  ++G++G       V  EM  LGV  + + +NT++   G  G
Sbjct: 640 TDGSRHKPRLTATYNTLIDLYGKAGRLKDAADVFAEMLKLGVAMDTITFNTMIYTCGSHG 699

Query: 342 KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYN 401
               A +L  EM E G++PD KT    + +Y        AL+ + ++RE     D + + 
Sbjct: 700 HLSEAETLLTEMEERGISPDTKTYNIFLSLYADGGNIDAALKCYRKIREVGLFPDVVTHR 759

Query: 402 TLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNA--------- 452
            +L++  +  +V E E +  +MK S   + D +S   ++ +Y + G +D A         
Sbjct: 760 AVLHVLCERNMVGEVETVIAEMKRSR-VRVDEHSIPVVIKMYVNEGLLDKAKIFLEEHLL 818

Query: 453 ------------IELFEEMS-------------ELGVAINVMGCTCLIQCLGKARRIDDL 487
                       I+ + E               +LG   +V+    +++  GKA+  D  
Sbjct: 819 EDELSSRTRVAIIDAYAEKGLWAEAENVFIGKRDLGQKKDVVEYNVMVKAYGKAKLYDKA 878

Query: 488 VRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAFLNLI 543
             +F    + G  P++     L+ + S  +  ++   ++  +Q+    P+ + F  +I
Sbjct: 879 FSLFKGMRNHGTWPNESTYNSLIQMFSGGDLVDEARDILAEMQKMGFKPQCLTFSAVI 936



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 82/197 (41%), Gaps = 2/197 (1%)

Query: 180  QNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFD 239
            Q+ F  +   +N  M       Q     +L +EM+S  I  D  T+  + T  K+  L  
Sbjct: 1096 QSGFLRDCASFNKVMACYATNGQLSACGELLHEMISRRILPDTGTFKVMFTVLKKGGLPT 1155

Query: 240  EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
            EA+   E  Y+ G        + I  V++  G     L   E  + +    D   ++V  
Sbjct: 1156 EAVTQLESSYQEG--KPYARQAVITSVFSTVGLHAFALESCETFLNAEVDLDSSFYNVAI 1213

Query: 300  KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
              +G SG  D    +  +M+  G++P+LV Y  L    GKAG     + ++ ++    + 
Sbjct: 1214 YAYGASGSIDKALKMFMKMQDEGLEPDLVTYINLAGCYGKAGMLEGLKRIYSQLKYREIE 1273

Query: 360  PDEKTLTALIKIYGKAR 376
            P+E    A+I  Y  A+
Sbjct: 1274 PNESLFKAIIDAYRSAK 1290



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/267 (19%), Positives = 112/267 (41%), Gaps = 8/267 (2%)

Query: 221  DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
            D +  +++I       L  EA   F+ + + G   D V+++ ++ +Y   G ++E + + 
Sbjct: 1033 DIVASNSMINLYADLGLVSEAKLIFDDLRQKG-SADGVSFATMMYLYKNLGMLDEAIDVA 1091

Query: 281  ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
            +    SG+  D  +F+ +   +  +G       +L EM S  + P+   +  +   + K 
Sbjct: 1092 DEMKQSGFLRDCASFNKVMACYATNGQLSACGELLHEMISRRILPDTGTFKVMFTVLKKG 1151

Query: 341  GKPGLARSLFDEMVESGL-TPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
            G P  A +  +   + G     +  +T++    G   +A   LE  E     +  +D   
Sbjct: 1152 GLPTEAVTQLESSYQEGKPYARQAVITSVFSTVGLHAFA---LESCETFLNAEVDLDSSF 1208

Query: 400  YNTLLNMCADIGLVEEAERLFEDMKLSDY-CKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458
            YN  +      G +++A ++F  MK+ D   +PD  +Y  +   YG  G ++    ++ +
Sbjct: 1209 YNVAIYAYGASGSIDKALKMF--MKMQDEGLEPDLVTYINLAGCYGKAGMLEGLKRIYSQ 1266

Query: 459  MSELGVAINVMGCTCLIQCLGKARRID 485
            +    +  N      +I     A+R D
Sbjct: 1267 LKYREIEPNESLFKAIIDAYRSAKRHD 1293



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 47/239 (19%), Positives = 99/239 (41%), Gaps = 33/239 (13%)

Query: 221  DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
            D ++++T++   K   + DEAI+  + M ++G + D  +++ ++  YA +G++     L 
Sbjct: 1067 DGVSFATMMYLYKNLGMLDEAIDVADEMKQSGFLRDCASFNKVMACYATNGQLSACGELL 1126

Query: 281  ERGVASGWKPDPIAFSVLGKMFG------------ESGDYDGIRYVLQEM-----KSLGV 323
               ++    PD   F V+  +              ES   +G  Y  Q +      ++G+
Sbjct: 1127 HEMISRRILPDTGTFKVMFTVLKKGGLPTEAVTQLESSYQEGKPYARQAVITSVFSTVGL 1186

Query: 324  QP----------------NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
                              +   YN  + A G +G    A  +F +M + GL PD  T   
Sbjct: 1187 HAFALESCETFLNAEVDLDSSFYNVAIYAYGASGSIDKALKMFMKMQDEGLEPDLVTYIN 1246

Query: 368  LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
            L   YGKA   +    ++ +++  +   +  L+  +++        + AE + ++MK +
Sbjct: 1247 LAGCYGKAGMLEGLKRIYSQLKYREIEPNESLFKAIIDAYRSAKRHDLAELVSQEMKFA 1305



 Score = 46.2 bits (108), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 49/103 (47%)

Query: 217  EIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV 276
            E++LD+  Y+  I         D+A++ F +M   GL PD VTY  +   Y K+G +E +
Sbjct: 1201 EVDLDSSFYNVAIYAYGASGSIDKALKMFMKMQDEGLEPDLVTYINLAGCYGKAGMLEGL 1260

Query: 277  LSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMK 319
              +Y +      +P+   F  +   +  +  +D    V QEMK
Sbjct: 1261 KRIYSQLKYREIEPNESLFKAIIDAYRSAKRHDLAELVSQEMK 1303


>gi|15228763|ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22470, mitochondrial; Flags: Precursor
 gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis thaliana]
 gi|51968798|dbj|BAD43091.1| hypothetical protein [Arabidopsis thaliana]
 gi|332643122|gb|AEE76643.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 619

 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 85/289 (29%), Positives = 148/289 (51%), Gaps = 4/289 (1%)

Query: 199 FGRQFQLIE--QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPD 256
           F ++ +L+E  +L NEM++  I  D ITY+++I    + N   EA + F+ M   G  PD
Sbjct: 325 FVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPD 384

Query: 257 EVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQ 316
            VTYS +++ Y K+ +V++ + L+    + G  P+ I ++ L   F +SG  +  + + Q
Sbjct: 385 IVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQ 444

Query: 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
           EM S GV P++V Y  LL+ +   G+   A  +F++M +S +T        +I     A 
Sbjct: 445 EMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNAS 504

Query: 377 WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY 436
              DA  L+  + +     D + YN ++      G + EA+ LF  MK  D C PD+++Y
Sbjct: 505 KVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMK-EDGCTPDDFTY 563

Query: 437 TAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
             ++  +  G  + +++EL EEM   G + +      +I  L   RR+D
Sbjct: 564 NILIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKMVIDMLSD-RRLD 611



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/312 (27%), Positives = 148/312 (47%), Gaps = 3/312 (0%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L + MV  +   D +T ST+I          EA+   +RM + G  PDEVTY  +L+   
Sbjct: 162 LVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLC 221

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           KSG     L L+ +      K   + +S++     + G +D    +  EM+  G++ ++V
Sbjct: 222 KSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVV 281

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            Y++L+  +   GK      +  EM+   + PD  T +ALI ++ K     +A EL+  M
Sbjct: 282 TYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEM 341

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
                  D I YN+L++       + EA ++F D+ +S  C+PD  +Y+ ++N Y     
Sbjct: 342 ITRGIAPDTITYNSLIDGFCKENCLHEANQMF-DLMVSKGCEPDIVTYSILINSYCKAKR 400

Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGC 508
           VD+ + LF E+S  G+  N +    L+    ++ +++    +F   + RGV P     G 
Sbjct: 401 VDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGI 460

Query: 509 LLSVVSLCETSE 520
           LL    LC+  E
Sbjct: 461 LLD--GLCDNGE 470



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 139/295 (47%), Gaps = 1/295 (0%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
            L  +M    I+   + YS +I    +   FD+A+  F  M   G+  D VTYS+++   
Sbjct: 231 DLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGL 290

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
              GK ++   +    +     PD + FS L  +F + G     + +  EM + G+ P+ 
Sbjct: 291 CNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDT 350

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
           + YN+L++   K      A  +FD MV  G  PD  T + LI  Y KA+   D + L+  
Sbjct: 351 ITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFRE 410

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           +       + I YNTL+      G +  A+ LF++M +S    P   +Y  +L+     G
Sbjct: 411 ISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEM-VSRGVPPSVVTYGILLDGLCDNG 469

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            ++ A+E+FE+M +  + + +     +I  +  A ++DD   +F    D+GVKPD
Sbjct: 470 ELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPD 524



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 82/332 (24%), Positives = 150/332 (45%), Gaps = 5/332 (1%)

Query: 172 FFFNWIKSQNLFPMET-IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIIT 230
            F + I+S+   P+ T I +N    ++   +Q+ L+      M  N IE D  T + +I 
Sbjct: 57  LFESMIQSR---PLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMIN 113

Query: 231 CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
           C  R      A     R +K G  PD +T+S +++ +   G+V E ++L +R V    +P
Sbjct: 114 CYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRP 173

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
           D +  S L       G       ++  M   G QP+ V Y  +L  + K+G   LA  LF
Sbjct: 174 DLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLF 233

Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
            +M E  +       + +I    K     DAL L+  M       D + Y++L+    + 
Sbjct: 234 RKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCND 293

Query: 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG 470
           G  ++  ++  +M +     PD  +++A+++++   G +  A EL+ EM   G+A + + 
Sbjct: 294 GKWDDGAKMLREM-IGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTIT 352

Query: 471 CTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
              LI    K   + +  ++F + + +G +PD
Sbjct: 353 YNSLIDGFCKENCLHEANQMFDLMVSKGCEPD 384



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 120/257 (46%), Gaps = 3/257 (1%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            +N + ++ + P +TI YN  +             Q+ + MVS   E D +TYS +I   
Sbjct: 337 LYNEMITRGIAP-DTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSY 395

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +    D+ +  F  +   GL+P+ +TY+ ++  + +SGK+     L++  V+ G  P  
Sbjct: 396 CKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSV 455

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           + + +L     ++G+ +    + ++M+   +   + +YN ++  M  A K   A SLF  
Sbjct: 456 VTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCS 515

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM-CADIG 411
           + + G+ PD  T   +I    K     +A  L+ +M+E+    D   YN L+       G
Sbjct: 516 LSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSG 575

Query: 412 LVEEAERLFEDMKLSDY 428
           L+   E L E+MK+  +
Sbjct: 576 LISSVE-LIEEMKVCGF 591



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 104/231 (45%), Gaps = 1/231 (0%)

Query: 272 KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYN 331
           KV + + L+E  + S   P PI F+ L      +  YD +    + M+  G++ ++    
Sbjct: 50  KVNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMT 109

Query: 332 TLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN 391
            ++    +  K   A S+     + G  PD  T + L+  +       +A+ L +RM E 
Sbjct: 110 IMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEM 169

Query: 392 KWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDN 451
           K   D +  +TL+N     G V EA  L + M    + +PD  +Y  +LN     GN   
Sbjct: 170 KQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGF-QPDEVTYGPVLNRLCKSGNSAL 228

Query: 452 AIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           A++LF +M E  +  +V+  + +I  L K    DD + +F     +G+K D
Sbjct: 229 ALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKAD 279


>gi|297848938|ref|XP_002892350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338192|gb|EFH68609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 493

 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/361 (24%), Positives = 183/361 (50%), Gaps = 7/361 (1%)

Query: 161 LNSLKFWQKSYFFFNWIKSQNLFPMETIF-YNVTMKSLRFGRQFQLIEQLANEMVSNEIE 219
           L+S+KF      F +  +S+   P+ +I  ++  + ++   ++++ +  L   +    I 
Sbjct: 49  LHSIKFNDALTLFCDMAESR---PLPSIVDFSRLLVAIAKLKKYEAVISLFRHIEILGIS 105

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
            D  ++ST+I C  RC+    A+    +M K G  P  VT+ ++++ +    +++E +SL
Sbjct: 106 HDLYSFSTLIDCFCRCSRLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRIQEAMSL 165

Query: 280 YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
            ++ V  G++P+ + ++ +     E+   D    VL  M+ +G++P+++ YN+L+  +  
Sbjct: 166 VDQIVGLGYEPNVVIYNTIIDSLCENRQVDTALDVLNHMEKMGIRPDVITYNSLITRLFH 225

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
           +GK G++  +  +M+  G+ PD  T +A+I ++GK     +A + ++ M +     + + 
Sbjct: 226 SGKWGVSARILSDMMRMGIHPDVITFSAMIDVFGKEGQLLEAKKQYDEMIQRSVDPNIVT 285

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           YN+L+N     GL++EA+++   M +S    P+  +Y  ++N Y     VD+A+++   M
Sbjct: 286 YNSLINGLCIHGLLDEAKKVLNFM-VSKGFFPNAVTYNTLVNGYCKSKRVDDAMKILCVM 344

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETS 519
           S  GV  +      L Q   +A + +   +V    +  GV PD      LL    LCE  
Sbjct: 345 SHDGVDGDTFTYNTLYQGYCQAGQFNAAEKVLARMVSCGVLPDIYTFNMLLD--GLCEHG 402

Query: 520 E 520
           +
Sbjct: 403 K 403



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 142/315 (45%), Gaps = 5/315 (1%)

Query: 192 VTMKSLRFG----RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           VT  SL  G     + Q    L +++V    E + + Y+TII         D A++    
Sbjct: 144 VTFGSLVNGFCHVNRIQEAMSLVDQIVGLGYEPNVVIYNTIIDSLCENRQVDTALDVLNH 203

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M K G+ PD +TY++++     SGK      +    +  G  PD I FS +  +FG+ G 
Sbjct: 204 MEKMGIRPDVITYNSLITRLFHSGKWGVSARILSDMMRMGIHPDVITFSAMIDVFGKEGQ 263

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
               +    EM    V PN+V YN+L+  +   G    A+ + + MV  G  P+  T   
Sbjct: 264 LLEAKKQYDEMIQRSVDPNIVTYNSLINGLCIHGLLDEAKKVLNFMVSKGFFPNAVTYNT 323

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           L+  Y K++   DA+++   M  +    D   YNTL       G    AE++   M +S 
Sbjct: 324 LVNGYCKSKRVDDAMKILCVMSHDGVDGDTFTYNTLYQGYCQAGQFNAAEKVLARM-VSC 382

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
              PD Y++  +L+     G ++ A+   E++ +    + ++    +I+ + KA +++D 
Sbjct: 383 GVLPDIYTFNMLLDGLCEHGKIEKALVKLEDLQKSETVVGIITYNIIIKGMCKANKVEDA 442

Query: 488 VRVFGVSIDRGVKPD 502
             +F     +GV PD
Sbjct: 443 WYLFCSLALKGVSPD 457



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 113/240 (47%), Gaps = 12/240 (5%)

Query: 199 FGRQFQLIE--QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPD 256
           FG++ QL+E  +  +EM+   ++ + +TY+++I       L DEA +    M   G  P+
Sbjct: 258 FGKEGQLLEAKKQYDEMIQRSVDPNIVTYNSLINGLCIHGLLDEAKKVLNFMVSKGFFPN 317

Query: 257 EVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQ 316
            VTY+ +++ Y KS +V++ + +       G   D   ++ L + + ++G ++    VL 
Sbjct: 318 AVTYNTLVNGYCKSKRVDDAMKILCVMSHDGVDGDTFTYNTLYQGYCQAGQFNAAEKVLA 377

Query: 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
            M S GV P++  +N LL+ + + GK   A    +++ +S       T   +IK   KA 
Sbjct: 378 RMVSCGVLPDIYTFNMLLDGLCEHGKIEKALVKLEDLQKSETVVGIITYNIIIKGMCKAN 437

Query: 377 WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE-----EAERLFEDMKLSDYCKP 431
             +DA  L+  +       D I Y T++     IGL       EA  L+  MK  D   P
Sbjct: 438 KVEDAWYLFCSLALKGVSPDVITYTTMM-----IGLRRKRLWLEAHELYRKMKKDDGLMP 492


>gi|449442579|ref|XP_004139059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 95/335 (28%), Positives = 164/335 (48%), Gaps = 2/335 (0%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           ++++   N   S+ + P   + YN  +  L    ++   + +  EM+   +  +  TY+T
Sbjct: 309 EEAFQLLNSFSSRGMEP-GLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNT 367

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           ++    R +   EA E F+ M + G++PD V++S+++ V A++G + + L  +     SG
Sbjct: 368 LLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSG 427

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
             PD + +++L   F  +G       +  EM + G   ++V YNT L  + K      A 
Sbjct: 428 IVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADAD 487

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
            LF+EMVE G+ PD  T T LI+ Y K      AL L+E M       D + YNTL++  
Sbjct: 488 MLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGF 547

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
              G +  A+ L++DM   D   PD+ SY  +LN + S G +  A+ L ++M E G+  N
Sbjct: 548 CKAGEMGRAKELWDDMIRKDII-PDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPN 606

Query: 468 VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           ++ C  LI+   ++  +          I  G+ PD
Sbjct: 607 LVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPD 641



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 80/282 (28%), Positives = 140/282 (49%), Gaps = 3/282 (1%)

Query: 185 METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEW 244
           M+ + YN  +  L   + F   + L NEMV   +  D  T++T+I    +    D+A+  
Sbjct: 465 MDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNL 524

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
           FE M +T L PD+VTY+ ++D + K+G++     L++  +     PD I++  +   F  
Sbjct: 525 FEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCS 584

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
           SG       +  +M   G++PNLV  NTL++   ++G    A     +M+ +G+ PD  +
Sbjct: 585 SGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFS 644

Query: 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN-MCADIGLVEEAERLFEDM 423
              LI  Y K    + A  L   M +     + I YN +LN  CA+ G ++EAE++   M
Sbjct: 645 YNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAE-GKMQEAEQVLRKM 703

Query: 424 KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
            +     PD  +Y++++N + S  N+  A    +EM + G+ 
Sbjct: 704 -IEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRGLV 744



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 143/306 (46%), Gaps = 8/306 (2%)

Query: 191 NVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYK 250
           N+ + +L   R+F+ +    ++M    +  D +TY+T+I    R  L +EA +       
Sbjct: 261 NIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSS 320

Query: 251 TGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDG 310
            G+ P  +TY+AIL    K GK +    +    +  G  P+   ++ L        +   
Sbjct: 321 RGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILE 380

Query: 311 IRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK 370
            + +  EM   GV P+LV +++L+  + + G    A   F EM  SG+ PD    T LI 
Sbjct: 381 AQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILID 440

Query: 371 IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCK 430
            + +     DAL++ + M      MD + YNT LN      +  +A+ LF +M +     
Sbjct: 441 GFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEM-VERGMV 499

Query: 431 PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ--C----LGKARRI 484
           PD Y++T ++  Y   GN+D A+ LFE M    +  + +    LI   C    +G+A+ +
Sbjct: 500 PDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKEL 559

Query: 485 -DDLVR 489
            DD++R
Sbjct: 560 WDDMIR 565



 Score =  109 bits (272), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 77/330 (23%), Positives = 144/330 (43%), Gaps = 34/330 (10%)

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
           +++ +EM    +  D +++S++I    R     +A+  F  M ++G++PD V Y+ ++D 
Sbjct: 382 QEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDG 441

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
           + ++G + + L + +  +A G   D + ++       +   +     +  EM   G+ P+
Sbjct: 442 FCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPD 501

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
              + TL+    K G    A +LF+ MV + L PD+ T   LI  + KA     A ELW+
Sbjct: 502 FYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWD 561

Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK--------------LSDYCK-- 430
            M       D I Y T+LN     GL+ EA  L + M               +  YC+  
Sbjct: 562 DMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSG 621

Query: 431 ------------------PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
                             PD++SY  +++ Y    N++ A  L  EM + G+  N++   
Sbjct: 622 DMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYN 681

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            ++       ++ +  +V    I+ G+ PD
Sbjct: 682 LILNGFCAEGKMQEAEQVLRKMIEIGINPD 711



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 146/298 (48%), Gaps = 1/298 (0%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           ++ +EM++    +D +TY+T +    +  +F +A   F  M + G++PD  T++ ++  Y
Sbjct: 453 KMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGY 512

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            K G +++ L+L+E  V +  KPD + ++ L   F ++G+    + +  +M    + P+ 
Sbjct: 513 CKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDH 572

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
           + Y T+L     +G    A +L D+M+E G+ P+  T   LIK Y ++     A E   +
Sbjct: 573 ISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSK 632

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           M  N    D   YNTL++       +E+A  L  +M+     + +  +Y  +LN + + G
Sbjct: 633 MISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRG-LQFNIITYNLILNGFCAEG 691

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRL 505
            +  A ++  +M E+G+  +    + LI        + +  R     + RG+ PDDR 
Sbjct: 692 KMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRGLVPDDRF 749



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 131/295 (44%), Gaps = 36/295 (12%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           ++  E+V   IEL+  T + ++    +   F+  + +   M   G+  D VTY+ +++ Y
Sbjct: 243 EIYGEVVRGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAY 302

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            + G VEE   L                                   L    S G++P L
Sbjct: 303 CREGLVEEAFQL-----------------------------------LNSFSSRGMEPGL 327

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
           + YN +L  + K GK   A+ +  EM++ GLTP+  T   L+    +     +A E+++ 
Sbjct: 328 LTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDE 387

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           M       D + +++L+ + A  G + +A   F +M+ S    PDN  YT +++ +   G
Sbjct: 388 MSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIV-PDNVIYTILIDGFCRNG 446

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            + +A+++ +EM   G  ++V+     +  L K +   D   +F   ++RG+ PD
Sbjct: 447 ALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPD 501


>gi|255551975|ref|XP_002517032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543667|gb|EEF45195.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 875

 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/310 (28%), Positives = 151/310 (48%), Gaps = 17/310 (5%)

Query: 159 LILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEI 218
           +IL     W+++   F W KS+  + +  I YN+ ++ L   +Q++ +E L NEM    I
Sbjct: 176 IILKEQCSWERAMEIFEWFKSRGCYELNVIHYNIMIRILGKAKQWRYLECLCNEMSFKRI 235

Query: 219 ELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS 278
              N TY T+I    +  L ++A++W E+M K G+ PDEVT   ++ +Y K+G+ ++   
Sbjct: 236 SPINSTYGTLIDVYSKGGLREKALDWLEKMNKQGMEPDEVTMGIVVQMYKKAGEFQKAEE 295

Query: 279 LYERGVASGWK-PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
            +++     W   + +   V GK          +R  ++  + + V  +   YNT+++  
Sbjct: 296 FFKK-----WSLREALRHKVTGKA--------SVR--VENERQMDVSLSSHTYNTMIDTY 340

Query: 338 GKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDF 397
           GKAG+   A  +F EM+   + P   T   +I I G     ++   L ++M E + P D 
Sbjct: 341 GKAGQIKEASDIFAEMLRKRILPTTVTFNTMIHICGNQGQLEEVALLMQKMEELRCPPDT 400

Query: 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE 457
             YN L+ + A    +  A   F+ MK  D  +PD  SY  +L  +     V++A  L  
Sbjct: 401 RTYNILIFIHAKHNDINMAASYFKRMK-KDQLQPDLVSYRTLLYAFSIRHMVNDAENLVS 459

Query: 458 EMSELGVAIN 467
           EM E G+ I+
Sbjct: 460 EMDEKGIEID 469



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 145/298 (48%), Gaps = 18/298 (6%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           +NV +K+  FG+ ++    L + M S+ +  D  +YS+++      +L D+A  + ++M 
Sbjct: 541 FNVMIKAYGFGKNYEKACDLFDSMESHGVVPDKCSYSSLVQILASADLPDKAKHYLKKMQ 600

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY- 308
           + GL+ D V Y A++  + K GK+E    +Y+  V    KPD I + VL   F +SG   
Sbjct: 601 EAGLVSDCVQYCAVISSFVKLGKLEMAEEVYKEMVGFDVKPDIIVYGVLINAFADSGCVK 660

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
           + I Y+   MK  G+  N V+YN+L++   K G    A+  +  +  S + P+  +   +
Sbjct: 661 EAISYI-DAMKGAGLPGNTVIYNSLIKLYTKVGYLREAQETYKLLQSSDVGPETYSSNCM 719

Query: 369 IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK---L 425
           I +Y +    K A E++E M+      +F  Y  +L M   +G  E+A ++ + M+   L
Sbjct: 720 IDLYSEQSMVKPAEEIFESMKRKGDANEFT-YAMMLCMYKRLGWFEQAIQIAKQMRELGL 778

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT------CLIQC 477
             Y      SY  +L +Y   G    A+  F+EM  +G  I    CT       L++C
Sbjct: 779 LTYL----LSYNNVLGLYALDGRFKEAVGTFKEM--VGAGIQPDDCTFKSLGIVLVKC 830



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 95/367 (25%), Positives = 163/367 (44%), Gaps = 26/367 (7%)

Query: 195 KSLRFGRQFQLIEQLANEM-------VSNEIELD----NITYSTIITCAKRCNLFDEAIE 243
           K+  F +++ L E L +++       V NE ++D    + TY+T+I    +     EA +
Sbjct: 292 KAEEFFKKWSLREALRHKVTGKASVRVENERQMDVSLSSHTYNTMIDTYGKAGQIKEASD 351

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
            F  M +  ++P  VT++ ++ +    G++EEV  L ++       PD   +++L  +  
Sbjct: 352 IFAEMLRKRILPTTVTFNTMIHICGNQGQLEEVALLMQKMEELRCPPDTRTYNILIFIHA 411

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
           +  D +      + MK   +QP+LV Y TLL A         A +L  EM E G+  DE 
Sbjct: 412 KHNDINMAASYFKRMKKDQLQPDLVSYRTLLYAFSIRHMVNDAENLVSEMDEKGIEIDEY 471

Query: 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLF--- 420
           T +AL ++Y +A   + +  LW         M    Y+  ++   + G V+EA R+F   
Sbjct: 472 TQSALTRMYIEAGMLEKSW-LWFWRFHLAGNMSSECYSANIDAYGERGHVKEAARVFACR 530

Query: 421 -EDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479
            E  KL+         +  M+  YG G N + A +LF+ M   GV  +    + L+Q L 
Sbjct: 531 LEQNKLT------VLEFNVMIKAYGFGKNYEKACDLFDSMESHGVVPDKCSYSSLVQILA 584

Query: 480 KARRIDDLVRVFGVSIDRGVKPD-DRLCGCLLSVVSL--CETSEDVGKVITCLQQANPKL 536
            A   D          + G+  D  + C  + S V L   E +E+V K +       P +
Sbjct: 585 SADLPDKAKHYLKKMQEAGLVSDCVQYCAVISSFVKLGKLEMAEEVYKEMVGF-DVKPDI 643

Query: 537 VAFLNLI 543
           + +  LI
Sbjct: 644 IVYGVLI 650



 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 135/304 (44%), Gaps = 6/304 (1%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           +F  +K   L P + + Y   + +          E L +EM    IE+D  T S +    
Sbjct: 422 YFKRMKKDQLQP-DLVSYRTLLYAFSIRHMVNDAENLVSEMDEKGIEIDEYTQSALTRMY 480

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
               + +++  WF R +  G M  E  YSA +D Y + G V+E   ++   +    K   
Sbjct: 481 IEAGMLEKSWLWFWRFHLAGNMSSEC-YSANIDAYGERGHVKEAARVFACRLEQN-KLTV 538

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           + F+V+ K +G   +Y+    +   M+S GV P+   Y++L++ +  A  P  A+    +
Sbjct: 539 LEFNVMIKAYGFGKNYEKACDLFDSMESHGVVPDKCSYSSLVQILASADLPDKAKHYLKK 598

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M E+GL  D     A+I  + K    + A E+++ M       D I+Y  L+N  AD G 
Sbjct: 599 MQEAGLVSDCVQYCAVISSFVKLGKLEMAEEVYKEMVGFDVKPDIIVYGVLINAFADSGC 658

Query: 413 VEEAERLFEDMKLSDYCKPDN-YSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC 471
           V+EA    + MK +    P N   Y +++ +Y   G +  A E ++ +    V       
Sbjct: 659 VKEAISYIDAMKGAGL--PGNTVIYNSLIKLYTKVGYLREAQETYKLLQSSDVGPETYSS 716

Query: 472 TCLI 475
            C+I
Sbjct: 717 NCMI 720



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/269 (20%), Positives = 110/269 (40%), Gaps = 35/269 (13%)

Query: 148 IPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIE 207
           +P + +  + + IL S     K+  +   ++   L      +  V    ++ G+  ++ E
Sbjct: 570 VPDKCSYSSLVQILASADLPDKAKHYLKKMQEAGLVSDCVQYCAVISSFVKLGK-LEMAE 628

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           ++  EMV  +++ D I Y  +I          EAI + + M   GL  + V Y++++ +Y
Sbjct: 629 EVYKEMVGFDVKPDIIVYGVLINAFADSGCVKEAISYIDAMKGAGLPGNTVIYNSLIKLY 688

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES----------------GDYDGI 311
            K G + E    Y+   +S   P+  + + +  ++ E                 GD +  
Sbjct: 689 TKVGYLREAQETYKLLQSSDVGPETYSSNCMIDLYSEQSMVKPAEEIFESMKRKGDANEF 748

Query: 312 RYVL------------------QEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
            Y +                  ++M+ LG+   L+ YN +L      G+   A   F EM
Sbjct: 749 TYAMMLCMYKRLGWFEQAIQIAKQMRELGLLTYLLSYNNVLGLYALDGRFKEAVGTFKEM 808

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDAL 382
           V +G+ PD+ T  +L  +  K   +K A+
Sbjct: 809 VGAGIQPDDCTFKSLGIVLVKCGISKQAV 837


>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 677

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 93/335 (27%), Positives = 165/335 (49%), Gaps = 4/335 (1%)

Query: 169 KSYFFFNWIKSQNLFPMETIF-YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           +++   N +  + L P  T+F YN  +  L    ++   + + NEM+S  +  D  TY+T
Sbjct: 238 EAFEVMNSMSGKGLKP--TLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNT 295

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           ++  + R N F EA + F  M   G+ PD +++S+++ V +++G +++ L  +     SG
Sbjct: 296 LLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSG 355

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
             PD + +++L   +  +G       +  +M   G   ++V YNT+L  + K      A 
Sbjct: 356 LVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADAN 415

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
           +LFDEMVE G+ PD  T T LI  + K      AL L+  M +     D + YN L++  
Sbjct: 416 ALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGF 475

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
                +E+A  L+ +M +S    P++ SY  ++N Y + G V  A  L++EM   G+   
Sbjct: 476 CKTTEMEKANELWNEM-ISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPT 534

Query: 468 VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           ++ C  +I+   ++  +       G  I  GV PD
Sbjct: 535 LVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPD 569



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 78/313 (24%), Positives = 144/313 (46%), Gaps = 3/313 (0%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           ++ NE+  + IEL+  T + ++    + +  D+   +   M + G+  D VTY+ +++ Y
Sbjct: 171 EVYNEIARSGIELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLINAY 230

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            + G + E   +       G KP    ++ +     + G Y   + V  EM S+G+ P+ 
Sbjct: 231 CREGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDT 290

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
             YNTLL    +      A+ +F +M+  G++PD  + ++LI +  +      AL  +  
Sbjct: 291 TTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRD 350

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           M+ +    D ++Y  L+N     G++ EA  + + M L   C  D  +Y  +LN      
Sbjct: 351 MKTSGLVPDNVIYTILINGYCRNGMMSEALEIRDKM-LEQGCALDVVAYNTILNGLCKKK 409

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCG 507
            + +A  LF+EM E GV  +    T LI    K   +   + +FG+   + +KPD     
Sbjct: 410 LLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYN 469

Query: 508 CLLSVVSLCETSE 520
            L+     C+T+E
Sbjct: 470 ILID--GFCKTTE 480



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 89/391 (22%), Positives = 164/391 (41%), Gaps = 40/391 (10%)

Query: 191 NVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYK 250
           N+ + +L    +   ++    +M    I  D +TY+T+I    R  L  EA E    M  
Sbjct: 189 NIMVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLINAYCREGLLGEAFEVMNSMSG 248

Query: 251 TGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDG 310
            GL P   TY+A+++   K G+      ++   ++ G  PD   ++ L      + ++  
Sbjct: 249 KGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLE 308

Query: 311 IRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK 370
            + +  +M   GV P+L+ +++L+    + G    A   F +M  SGL PD    T LI 
Sbjct: 309 AKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILIN 368

Query: 371 IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK----LS 426
            Y +     +ALE+ ++M E    +D + YNT+LN      L+ +A  LF++M     + 
Sbjct: 369 GYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANALFDEMVERGVVP 428

Query: 427 DYC------------------------------KPDNYSYTAMLNIYGSGGNVDNAIELF 456
           D+C                              KPD  +Y  +++ +     ++ A EL+
Sbjct: 429 DFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKTTEMEKANELW 488

Query: 457 EEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVV--- 513
            EM    +  N +    L+        + +  R++   I +G+KP    C  ++      
Sbjct: 489 NEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTVIKGYCRS 548

Query: 514 -SLCETSEDVGKVITCLQQANPKLVAFLNLI 543
             L +  E +GK+I+  +   P  + +  LI
Sbjct: 549 GDLSKADEFLGKMIS--EGVGPDSITYNTLI 577



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 150/335 (44%), Gaps = 2/335 (0%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           ++  +F  +K+  L P   I+  +     R G   + +E + ++M+     LD + Y+TI
Sbjct: 343 QALMYFRDMKTSGLVPDNVIYTILINGYCRNGMMSEALE-IRDKMLEQGCALDVVAYNTI 401

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
           +    +  L  +A   F+ M + G++PD  T++ ++  + K G + + LSL+        
Sbjct: 402 LNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNI 461

Query: 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348
           KPD + +++L   F ++ + +    +  EM S  + PN + Y  L+      G    A  
Sbjct: 462 KPDIVTYNILIDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFR 521

Query: 349 LFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCA 408
           L+DEM+  G+ P   T   +IK Y ++     A E   +M       D I YNTL+N   
Sbjct: 522 LWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFV 581

Query: 409 DIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINV 468
               +++A  L   M+ +   +PD  +Y  +LN +   G +  A  +  +M E G+  + 
Sbjct: 582 KGEYMDKAFFLINKME-TKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMIERGIDPDR 640

Query: 469 MGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
              T LI        + +  R     + RG  PDD
Sbjct: 641 STYTTLINGYVSQDNLKEAFRFHDEMLQRGFVPDD 675



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/336 (22%), Positives = 151/336 (44%), Gaps = 38/336 (11%)

Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS 261
           + +++E L +  +S+   +DN+ +  +I    +    +E  + F+ + + G +      +
Sbjct: 97  RVEIVESLIS--MSSTCGVDNLVFDLLIRSYVQARKLNEGTDTFKILRRKGFLVSINACN 154

Query: 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
           ++L    K G V+    +Y     SG + +    +++     +    D ++  L +M+  
Sbjct: 155 SLLGGLVKMGWVDLAWEVYNEIARSGIELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQK 214

Query: 322 GVQPNLVVYNTLLEAM-----------------GKAGKPGL------------------A 346
           G+  ++V YNTL+ A                  GK  KP L                  A
Sbjct: 215 GIFADIVTYNTLINAYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRA 274

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
           + +F+EM+  GL+PD  T   L+    +     +A +++  M       D I +++L+ +
Sbjct: 275 KGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGV 334

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
            +  G +++A   F DMK S    PDN  YT ++N Y   G +  A+E+ ++M E G A+
Sbjct: 335 SSRNGHLDQALMYFRDMKTSGLV-PDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCAL 393

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           +V+    ++  L K + + D   +F   ++RGV PD
Sbjct: 394 DVVAYNTILNGLCKKKLLADANALFDEMVERGVVPD 429


>gi|242095042|ref|XP_002438011.1| hypothetical protein SORBIDRAFT_10g006490 [Sorghum bicolor]
 gi|241916234|gb|EER89378.1| hypothetical protein SORBIDRAFT_10g006490 [Sorghum bicolor]
          Length = 1443

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 124/239 (51%), Gaps = 1/239 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D ITY+T+I+   + +  ++A+  FE M  +   PD  TY+A++ V+ + GK EE   L+
Sbjct: 292 DVITYNTLISACSQSSNLEDAVTVFEEMIASECRPDLWTYNAMVSVHGRCGKAEEAERLF 351

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
              V  G+ PD + ++ L   F + G+ D + +  +E+   G + N + YNT++   GK 
Sbjct: 352 GELVEKGFMPDAVTYNSLLYAFAKEGNVDKVEHTCEELVKAGFKKNEITYNTMIHMYGKM 411

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G+  LA  L+DEM   G TPD  T T +I   GK     +A ++ E M +       + +
Sbjct: 412 GRLDLAVGLYDEMRAVGCTPDAVTYTVMIDSLGKMDKIAEAGKVLEDMADAGLKPTLVAF 471

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           + L+   A  G   +AE+ F+ M ++   KPD  +Y  ML+++   G  +  + L+  M
Sbjct: 472 SALICAYAKGGRRADAEKTFDCM-IASGVKPDRLAYLVMLDVFARSGETEKMLRLYRTM 529



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/355 (25%), Positives = 176/355 (49%), Gaps = 8/355 (2%)

Query: 177 IKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCN 236
           ++   L P + I YN  + +       +    +  EM+++E   D  TY+ +++   RC 
Sbjct: 284 VRQSGLRP-DVITYNTLISACSQSSNLEDAVTVFEEMIASECRPDLWTYNAMVSVHGRCG 342

Query: 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS 296
             +EA   F  + + G MPD VTY+++L  +AK G V++V    E  V +G+K + I ++
Sbjct: 343 KAEEAERLFGELVEKGFMPDAVTYNSLLYAFAKEGNVDKVEHTCEELVKAGFKKNEITYN 402

Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356
            +  M+G+ G  D    +  EM+++G  P+ V Y  +++++GK  K   A  + ++M ++
Sbjct: 403 TMIHMYGKMGRLDLAVGLYDEMRAVGCTPDAVTYTVMIDSLGKMDKIAEAGKVLEDMADA 462

Query: 357 GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEA 416
           GL P     +ALI  Y K     DA + ++ M  +    D + Y  +L++ A  G  E+ 
Sbjct: 463 GLKPTLVAFSALICAYAKGGRRADAEKTFDCMIASGVKPDRLAYLVMLDVFARSGETEKM 522

Query: 417 ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL-GVAINVMGCTCLI 475
            RL+  M ++D  +PD+  Y  +L         +   E+ ++M  L  +++ V+  T LI
Sbjct: 523 LRLYRTM-MNDNYRPDDDMYQVLLVALAKEDKCEEIEEIIQDMELLCQMSLGVIS-TILI 580

Query: 476 QCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQ 530
               KAR +    ++   +  +G KPD +    +++   + E  E+   ++ C++
Sbjct: 581 ----KARCVSQGGKLLKKACLQGYKPDAKSLWSIMNAYVMTEKHEEGLSLLECIR 631



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 77/339 (22%), Positives = 164/339 (48%), Gaps = 3/339 (0%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKR--CNLFDEAIEWFER 247
           +N  M       +F    QL + M    I+ D ++++T+I    +  C     A++    
Sbjct: 224 FNAMMGVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINARSKSGCLAAGVALDLLFE 283

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           + ++GL PD +TY+ ++   ++S  +E+ ++++E  +AS  +PD   ++ +  + G  G 
Sbjct: 284 VRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEEMIASECRPDLWTYNAMVSVHGRCGK 343

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
            +    +  E+   G  P+ V YN+LL A  K G         +E+V++G   +E T   
Sbjct: 344 AEEAERLFGELVEKGFMPDAVTYNSLLYAFAKEGNVDKVEHTCEELVKAGFKKNEITYNT 403

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           +I +YGK      A+ L++ MR      D + Y  +++    +  + EA ++ EDM  + 
Sbjct: 404 MIHMYGKMGRLDLAVGLYDEMRAVGCTPDAVTYTVMIDSLGKMDKIAEAGKVLEDMADAG 463

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
             KP   +++A++  Y  GG   +A + F+ M   GV  + +    ++    ++   + +
Sbjct: 464 L-KPTLVAFSALICAYAKGGRRADAEKTFDCMIASGVKPDRLAYLVMLDVFARSGETEKM 522

Query: 488 VRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           +R++   ++   +PDD +   LL  ++  +  E++ ++I
Sbjct: 523 LRLYRTMMNDNYRPDDDMYQVLLVALAKEDKCEEIEEII 561



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 110/535 (20%), Positives = 225/535 (42%), Gaps = 8/535 (1%)

Query: 173  FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F N IK+  L  ++++  N  M++L    +   +  +  E+   + ++   T   ++   
Sbjct: 803  FDNMIKTGPLPTVDSV--NGMMRALIVDGRLDELYVVVGELQDMDFKISKSTVLLMLDAF 860

Query: 233  KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
             +     E ++ +  M   G +P+   Y ++  +     +  +V  +      +G+KPD 
Sbjct: 861  AKAGDVFEVMKIYNGMKAAGYLPNMHLYRSMTSLLCHHNRFRDVELMIAEMEGAGFKPDL 920

Query: 293  IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
              F+ L  M+  +G++D    V Q +   G++P+   YNTL+    ++ +P    +L +E
Sbjct: 921  SIFNSLLNMYTAAGNFDRTTQVYQSILEAGLEPDEDTYNTLIVMYCRSLRPEEGFTLLNE 980

Query: 353  MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
            M + GLTP  ++  +L+    KA   + A +L+E MR   + ++  +Y+ ++ +  + G 
Sbjct: 981  MGKRGLTPKLQSYKSLLAASAKAELREQADQLFEEMRSKSYQLNRSIYHMMMKIYRNAGN 1040

Query: 413  VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
              +AE L   MK  D  +P   +   ++  YG+ G    A  +   +    + ++ +  +
Sbjct: 1041 HSKAENLLAVMK-EDGIEPTIATMHILMTSYGTAGQPHEAENVLNSLKSSSLEVSTLPYS 1099

Query: 473  CLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQA 532
             +     K    D  ++        GV+PD ++  C +   SLCE + D   ++  LQ  
Sbjct: 1100 TVFDAYLKNGDYDLGIKKLLEMKRDGVEPDHQVWTCFIRAASLCEQTADAILLLKSLQDC 1159

Query: 533  NPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHEL 592
               L   + L+ + +    +    +   ++  E  A   F N + D+         A  +
Sbjct: 1160 GFDLP--IRLLTERTPSLLSEIANYLEELEALEDSAALNFVNAVEDLLWAFECRATASRI 1217

Query: 593  LYLGTLYGLY-PGLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAKIVLR-EEVLPQLF 650
              L     +Y   +      +W  D R LS GAA   L  W+  +    L+     P+  
Sbjct: 1218 FQLAVERSIYRDNVFRVAQKDWGADFRKLSAGAALVGLTLWLDHMQDASLQGSPESPKSV 1277

Query: 651  LAETGTGTHKFSQGLATAFASHVNKLAAPFRQSEGKAGCFVATREDLVSWVQARP 705
            +  TG G +     L     +++ ++ +PF     ++G FV     L  W++  P
Sbjct: 1278 VLVTGEGEYNMVS-LRKTIRAYLLEMGSPFLPCRARSGRFVVKAYSLKMWLKDSP 1331



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 140/308 (45%), Gaps = 11/308 (3%)

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           +A EW  R       P     + +L V  ++ +      ++ R    G       F+ + 
Sbjct: 175 DAFEWLAR----STAPASRAVAVVLGVLGRARQDSIAEEVFLRFAGEGATVQ--VFNAMM 228

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG--KPGLARSLFDEMVESG 357
            ++  SG +D  R +L  M   G+ P+LV +NTL+ A  K+G    G+A  L  E+ +SG
Sbjct: 229 GVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINARSKSGCLAAGVALDLLFEVRQSG 288

Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417
           L PD  T   LI    ++   +DA+ ++E M  ++   D   YN ++++    G  EEAE
Sbjct: 289 LRPDVITYNTLISACSQSSNLEDAVTVFEEMIASECRPDLWTYNAMVSVHGRCGKAEEAE 348

Query: 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
           RLF ++    +  PD  +Y ++L  +   GNVD      EE+ + G   N +    +I  
Sbjct: 349 RLFGELVEKGFM-PDAVTYNSLLYAFAKEGNVDKVEHTCEELVKAGFKKNEITYNTMIHM 407

Query: 478 LGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PK 535
            GK  R+D  V ++      G  PD      ++  +   +   + GKV+  +  A   P 
Sbjct: 408 YGKMGRLDLAVGLYDEMRAVGCTPDAVTYTVMIDSLGKMDKIAEAGKVLEDMADAGLKPT 467

Query: 536 LVAFLNLI 543
           LVAF  LI
Sbjct: 468 LVAFSALI 475



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/275 (20%), Positives = 110/275 (40%), Gaps = 36/275 (13%)

Query: 225 YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
           Y  +ITC     LF EA + F  M   G+   +  Y +I+  Y K G  E    L +  +
Sbjct: 678 YEHLITCLVEAELFSEACQVFCDMQFIGIEASKNIYESIISTYCKLGFPETAHGLMDDAL 737

Query: 285 ASG---------------------WKPDPI--------------AFSVLGKMFGESGDYD 309
            SG                     W+   I               ++ L   + ESG Y+
Sbjct: 738 QSGIPLNILSCRVIIIEAYGNIKLWQQAEILVKGLRQASGIDRRIWNALIHAYAESGLYE 797

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
             R V   M   G  P +   N ++ A+   G+      +  E+ +      + T+  ++
Sbjct: 798 KARAVFDNMIKTGPLPTVDSVNGMMRALIVDGRLDELYVVVGELQDMDFKISKSTVLLML 857

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
             + KA    + ++++  M+   +  +  LY ++ ++        + E +  +M+ + + 
Sbjct: 858 DAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRSMTSLLCHHNRFRDVELMIAEMEGAGF- 916

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
           KPD   + ++LN+Y + GN D   ++++ + E G+
Sbjct: 917 KPDLSIFNSLLNMYTAAGNFDRTTQVYQSILEAGL 951


>gi|15221540|ref|NP_172145.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75205637|sp|Q9SHK2.1|PPR17_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g06580
 gi|6692678|gb|AAF24812.1|AC007592_5 F12K11.8 [Arabidopsis thaliana]
 gi|332189887|gb|AEE28008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 500

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 91/371 (24%), Positives = 184/371 (49%), Gaps = 8/371 (2%)

Query: 161 LNSLKFWQKSYFFFNWIKSQNLFPMETIF-YNVTMKSLRFGRQFQLIEQLANEMVSNEIE 219
           L+S+KF      F +  +S    P+ +I  ++  + ++    +++ +  L   +    I 
Sbjct: 55  LHSIKFNDALTLFCDMAESH---PLPSIVDFSRLLIAIAKLNKYEAVISLFRHLEMLGIS 111

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
            D  +++T+I C  RC     A+    +M K G  P  VT+ ++++ +    +  E +SL
Sbjct: 112 HDLYSFTTLIDCFCRCARLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRFYEAMSL 171

Query: 280 YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
            ++ V  G++P+ + ++ +     E G  +    VL+ MK +G++P++V YN+L+  +  
Sbjct: 172 VDQIVGLGYEPNVVIYNTIIDSLCEKGQVNTALDVLKHMKKMGIRPDVVTYNSLITRLFH 231

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
           +G  G++  +  +M+  G++PD  T +ALI +YGK     +A + +  M +     + + 
Sbjct: 232 SGTWGVSARILSDMMRMGISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVT 291

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           YN+L+N     GL++EA+++  ++ +S    P+  +Y  ++N Y     VD+ +++   M
Sbjct: 292 YNSLINGLCIHGLLDEAKKVL-NVLVSKGFFPNAVTYNTLINGYCKAKRVDDGMKILCVM 350

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETS 519
           S  GV  +      L Q   +A +     +V G  +  GV PD      LL    LC+  
Sbjct: 351 SRDGVDGDTFTYNTLYQGYCQAGKFSAAEKVLGRMVSCGVHPDMYTFNILLD--GLCDHG 408

Query: 520 EDVGKVITCLQ 530
           + +GK +  L+
Sbjct: 409 K-IGKALVRLE 418



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 136/305 (44%), Gaps = 5/305 (1%)

Query: 198 RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDE 257
           RF     L++Q+    V    E + + Y+TII         + A++  + M K G+ PD 
Sbjct: 164 RFYEAMSLVDQI----VGLGYEPNVVIYNTIIDSLCEKGQVNTALDVLKHMKKMGIRPDV 219

Query: 258 VTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQE 317
           VTY++++     SG       +    +  G  PD I FS L  ++G+ G     +    E
Sbjct: 220 VTYNSLITRLFHSGTWGVSARILSDMMRMGISPDVITFSALIDVYGKEGQLLEAKKQYNE 279

Query: 318 MKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARW 377
           M    V PN+V YN+L+  +   G    A+ + + +V  G  P+  T   LI  Y KA+ 
Sbjct: 280 MIQRSVNPNIVTYNSLINGLCIHGLLDEAKKVLNVLVSKGFFPNAVTYNTLINGYCKAKR 339

Query: 378 AKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYT 437
             D +++   M  +    D   YNTL       G    AE++   M +S    PD Y++ 
Sbjct: 340 VDDGMKILCVMSRDGVDGDTFTYNTLYQGYCQAGKFSAAEKVLGRM-VSCGVHPDMYTFN 398

Query: 438 AMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDR 497
            +L+     G +  A+   E++ +    + ++    +I+ L KA +++D   +F     +
Sbjct: 399 ILLDGLCDHGKIGKALVRLEDLQKSKTVVGIITYNIIIKGLCKADKVEDAWYLFCSLALK 458

Query: 498 GVKPD 502
           GV PD
Sbjct: 459 GVSPD 463



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 109/235 (46%), Gaps = 2/235 (0%)

Query: 199 FGRQFQLIE--QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPD 256
           +G++ QL+E  +  NEM+   +  + +TY+++I       L DEA +    +   G  P+
Sbjct: 264 YGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGLLDEAKKVLNVLVSKGFFPN 323

Query: 257 EVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQ 316
            VTY+ +++ Y K+ +V++ + +       G   D   ++ L + + ++G +     VL 
Sbjct: 324 AVTYNTLINGYCKAKRVDDGMKILCVMSRDGVDGDTFTYNTLYQGYCQAGKFSAAEKVLG 383

Query: 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
            M S GV P++  +N LL+ +   GK G A    +++ +S       T   +IK   KA 
Sbjct: 384 RMVSCGVHPDMYTFNILLDGLCDHGKIGKALVRLEDLQKSKTVVGIITYNIIIKGLCKAD 443

Query: 377 WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
             +DA  L+  +       D I Y T++       L  EA  L+  M+  D   P
Sbjct: 444 KVEDAWYLFCSLALKGVSPDVITYITMMIGLRRKRLWREAHELYRKMQKEDGLMP 498


>gi|255661186|gb|ACU25762.1| pentatricopeptide repeat-containing protein [Xeroaloysia
           ovatifolia]
          Length = 426

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 89/290 (30%), Positives = 148/290 (51%), Gaps = 1/290 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D  TYST+IT   +  LFD A+ W ++M +  +  D V YS ++++  K     + +S++
Sbjct: 8   DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
            R   SG+ PD +A++ +  +FG++  +   R ++ EM++ GV PN   Y TLL    + 
Sbjct: 68  SRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYTTLLTMYVEN 127

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
            K   A S+F EM E     D  T   +I +YG+   AK+A +L+  MR+     + + Y
Sbjct: 128 KKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSY 187

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           NTLL +  D  L  EA  LF  M+  +  + +  +Y +M+ IYG     + A  L +EM 
Sbjct: 188 NTLLRVYGDAELFGEAIHLFRLMQRKNIVQ-NVVTYNSMMMIYGKTLEHEKANNLIQEMQ 246

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
             G+  N +  + +I   GKA ++D    +F      GV+ D  L   ++
Sbjct: 247 NRGIEPNSITYSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTMI 296



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 163/345 (47%), Gaps = 6/345 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K     P + + YN  +      + F+    L +EM +  +  +  +Y+
Sbjct: 60  YSKAISIFSRLKRSGFTP-DLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYT 118

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY + G  +E   L+      
Sbjct: 119 TLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 178

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   +  N+V YN+++   GK  +   A
Sbjct: 179 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEKA 238

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GKA     A  L++++R +   +D +LY T++  
Sbjct: 239 NNLIQEMQNRGIEPNSITYSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVA 298

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K      PDN      ++I    G ++ A  +F +  + G   
Sbjct: 299 YEKAGLVAHAKRLLHELK-----SPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVR 353

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
           ++     +I    K ++  ++V VF      G  PD  +   +L+
Sbjct: 354 DITVFERMIHLFSKYKKYANVVEVFDKMRGLGYFPDSNVIALVLN 398



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 138/271 (50%), Gaps = 1/271 (0%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
            +M  + +  D + YS +I  +++   + +AI  F R+ ++G  PD V Y+A+++V+ K+
Sbjct: 33  QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKA 92

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
               E  SL      +G  P+  +++ L  M+ E+  +     V  EM+ +    +L   
Sbjct: 93  KLFREARSLISEMRTAGVMPNTASYTTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTC 152

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
           N +++  G+ G    A  LF  M + G+ P+  +   L+++YG A    +A+ L+  M+ 
Sbjct: 153 NIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR 212

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
                + + YN+++ +       E+A  L ++M+ +   +P++ +Y+ +++I+G  G +D
Sbjct: 213 KNIVQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ-NRGIEPNSITYSTIISIWGKAGKLD 271

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
            A  LF+++   GV I+ +    +I    KA
Sbjct: 272 RAAMLFQKLRSSGVEIDQVLYQTMIVAYEKA 302



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 124/261 (47%), Gaps = 1/261 (0%)

Query: 252 GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGI 311
            L PD  TYS ++  + K G  +  LS  ++        D + +S L ++  +  DY   
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 312 RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371
             +   +K  G  P+LV YN ++   GKA     ARSL  EM  +G+ P+  + T L+ +
Sbjct: 64  ISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYTTLLTM 123

Query: 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
           Y + +   +AL ++  MRE K  +D    N ++++   +G+ +EA++LF  M+     +P
Sbjct: 124 YVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG-IEP 182

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           +  SY  +L +YG       AI LF  M    +  NV+    ++   GK    +    + 
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEKANNLI 242

Query: 492 GVSIDRGVKPDDRLCGCLLSV 512
               +RG++P+      ++S+
Sbjct: 243 QEMQNRGIEPNSITYSTIISI 263



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 122/246 (49%), Gaps = 5/246 (2%)

Query: 218 IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL 277
           IE + ++Y+T++       LF EAI  F  M +  ++ + VTY++++ +Y K+ + E+  
Sbjct: 180 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEKAN 239

Query: 278 SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
           +L +     G +P+ I +S +  ++G++G  D    + Q+++S GV+ + V+Y T++ A 
Sbjct: 240 NLIQEMQNRGIEPNSITYSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAY 299

Query: 338 GKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDF 397
            KAG    A+ L  E+     +PD       I I   A   ++A  ++ +  +     D 
Sbjct: 300 EKAGLVAHAKRLLHELK----SPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVRDI 355

Query: 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE 457
            ++  ++++ +          +F+ M+   Y  PD+     +LN YG     D A  ++ 
Sbjct: 356 TVFERMIHLFSKYKKYANVVEVFDKMRGLGYF-PDSNVIALVLNAYGKLHEFDKANGVYM 414

Query: 458 EMSELG 463
           EM E+G
Sbjct: 415 EMQEVG 420



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 96/244 (39%), Gaps = 36/244 (14%)

Query: 290 PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSL 349
           PD   +S L   FG+ G +D     LQ+M+   V  +LV+Y+ L+E   K      A S+
Sbjct: 7   PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66

Query: 350 FDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCAD 409
           F  +  SG TP                                   D + YN ++N+   
Sbjct: 67  FSRLKRSGFTP-----------------------------------DLVAYNAMINVFGK 91

Query: 410 IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVM 469
             L  EA  L  +M+ +    P+  SYT +L +Y        A+ +F EM E+   +++ 
Sbjct: 92  AKLFREARSLISEMRTAG-VMPNTASYTTLLTMYVENKKFLEALSVFSEMREIKCLLDLT 150

Query: 470 GCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCL 529
            C  +I   G+     +  ++F      G++P+      LL V    E   +   +   +
Sbjct: 151 TCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLM 210

Query: 530 QQAN 533
           Q+ N
Sbjct: 211 QRKN 214



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 53/242 (21%), Positives = 101/242 (41%), Gaps = 5/242 (2%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           P+  +    L +    + + ++   F  ++ +N+     + YN  M       + +    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQ-NVVTYNSMMMIYGKTLEHEKANN 240

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  EM +  IE ++ITYSTII+   +    D A   F+++  +G+  D+V Y  ++  Y 
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYE 300

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           K+G V       +R +     PD I       +   +G  +   YV ++    G   ++ 
Sbjct: 301 KAGLVAHA----KRLLHELKSPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVRDIT 356

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
           V+  ++    K  K      +FD+M   G  PD   +  ++  YGK      A  ++  M
Sbjct: 357 VFERMIHLFSKYKKYANVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANGVYMEM 416

Query: 389 RE 390
           +E
Sbjct: 417 QE 418



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 87/191 (45%), Gaps = 3/191 (1%)

Query: 355 ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
           E  L+PD  T + LI  +GK      AL   ++M +++ P D +LY+ L+ +   +    
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
           +A  +F  +K S +  PD  +Y AM+N++G       A  L  EM   GV  N    T L
Sbjct: 62  KAISIFSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYTTL 120

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN- 533
           +    + ++  + + VF    +     D   C  ++ V      +++  K+   +++   
Sbjct: 121 LTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180

Query: 534 -PKLVAFLNLI 543
            P +V++  L+
Sbjct: 181 EPNVVSYNTLL 191


>gi|12583808|gb|AAG59660.1|AC084319_18 putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
          Length = 772

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 95/368 (25%), Positives = 169/368 (45%), Gaps = 40/368 (10%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + YN  +K L   +++  +E+L +EMV  +   + +T++T+I    R  LF+   E  
Sbjct: 215 DIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVL 274

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP--------------- 290
            +M + G  PD   Y+ I+D   K G +E    +  R  + G KP               
Sbjct: 275 AQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSA 334

Query: 291 --------------------DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
                               D + F++L   F ++G  D +  +L++M S G  P+++ Y
Sbjct: 335 ERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITY 394

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK-IYGKARWAKDALELWERMR 389
            T++    K G    A  L   M   G  P+  + T ++K +    RW  DA EL  +M 
Sbjct: 395 TTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWV-DAEELMSQMI 453

Query: 390 ENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNV 449
           +   P + + +NTL+N     GLVE+A  L + M L + C PD  SY+ +++  G  G  
Sbjct: 454 QQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQM-LVNGCSPDLISYSTVIDGLGKAGKT 512

Query: 450 DNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCL 509
           + A+EL   M   G++ N +  + +   L +  R++ ++++F    D  ++ D  L   +
Sbjct: 513 EEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAV 572

Query: 510 LSVVSLCE 517
           +S  SLC+
Sbjct: 573 IS--SLCK 578



 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/319 (26%), Positives = 158/319 (49%), Gaps = 5/319 (1%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
             N + S  L P   + YN  +K L    +++  E+L +EM   +  LD++T++ ++   
Sbjct: 308 ILNRMPSYGLKP-NVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFF 366

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +  L D  IE  E+M   G MPD +TY+ +++ + K G ++E + L +   + G KP+ 
Sbjct: 367 CQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNT 426

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           ++++++ K    +G +     ++ +M   G  PN V +NTL+  + K G    A  L  +
Sbjct: 427 VSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQ 486

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M+ +G +PD  + + +I   GKA   ++ALEL   M       + I+Y+++    +  G 
Sbjct: 487 MLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGR 546

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
           V +  ++F+++K +   + D   Y A+++        D AI+ F  M   G   N    T
Sbjct: 547 VNKVIQMFDNIKDTTI-RSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYT 605

Query: 473 CLIQCL---GKARRIDDLV 488
            LI+ L   G A+   +L+
Sbjct: 606 MLIKGLASEGLAKEAQELL 624



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/302 (24%), Positives = 143/302 (47%), Gaps = 1/302 (0%)

Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS 261
             ++  ++ N M S  ++ + + Y+T++        + EA E    M++     D+VT++
Sbjct: 301 HLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFN 360

Query: 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
            ++D + ++G V+ V+ L E+ ++ G  PD I ++ +   F + G  D    +L+ M S 
Sbjct: 361 ILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSC 420

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
           G +PN V Y  +L+ +  AG+   A  L  +M++ G  P+  T   LI    K    + A
Sbjct: 421 GCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQA 480

Query: 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
           +EL ++M  N    D I Y+T+++     G  EEA  L   M ++    P+   Y+++  
Sbjct: 481 IELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVM-VNKGISPNTIIYSSIAC 539

Query: 442 IYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
                G V+  I++F+ + +  +  + +    +I  L K    D  +  F   +  G  P
Sbjct: 540 ALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMP 599

Query: 502 DD 503
           ++
Sbjct: 600 NE 601



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 145/319 (45%), Gaps = 5/319 (1%)

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           PM  +      +S  F    +++E +  +  + +    N+  + I  C + C   DEA+ 
Sbjct: 147 PMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAI--CEQGC--VDEAVG 202

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
              ++   G   D V+Y+A+L     + +  +V  L +  V     P+ + F+ L     
Sbjct: 203 LLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLC 262

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
            +G ++ +  VL +M   G  P++ +Y T+++ + K G   +A  + + M   GL P+  
Sbjct: 263 RNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVV 322

Query: 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
               ++K    A   K+A EL   M +   P+D + +N L++     GLV+    L E M
Sbjct: 323 CYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQM 382

Query: 424 KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483
            LS  C PD  +YT ++N +   G +D A+ L + MS  G   N +  T +++ L  A R
Sbjct: 383 -LSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGR 441

Query: 484 IDDLVRVFGVSIDRGVKPD 502
             D   +    I +G  P+
Sbjct: 442 WVDAEELMSQMIQQGCPPN 460



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 61/276 (22%), Positives = 122/276 (44%), Gaps = 37/276 (13%)

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI- 242
           P++ + +N+ +           + +L  +M+S+    D ITY+T+I    +  L DEA+ 
Sbjct: 353 PLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVM 412

Query: 243 ----------------------------------EWFERMYKTGLMPDEVTYSAILDVYA 268
                                             E   +M + G  P+ VT++ +++   
Sbjct: 413 LLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLC 472

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           K G VE+ + L ++ + +G  PD I++S +    G++G  +    +L  M + G+ PN +
Sbjct: 473 KKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTI 532

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD-ALELWER 387
           +Y+++  A+ + G+      +FD + ++ +  D     A+I    K RW  D A++ +  
Sbjct: 533 IYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCK-RWETDRAIDFFAY 591

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
           M  N    +   Y  L+   A  GL +EA+ L  ++
Sbjct: 592 MVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSEL 627



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/298 (24%), Positives = 116/298 (38%), Gaps = 36/298 (12%)

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           +A+E  + M   G  P    Y  IL+   +SG     + + E   A G   D    +++ 
Sbjct: 129 DALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVL 188

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMV----- 354
               E G  D    +L+++   G + ++V YN +L+ +  A + G    L DEMV     
Sbjct: 189 NAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCA 248

Query: 355 ------------------------------ESGLTPDEKTLTALIKIYGKARWAKDALEL 384
                                         E G TPD +    +I    K    + A E+
Sbjct: 249 PNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEI 308

Query: 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYG 444
             RM       + + YNT+L         +EAE L  +M   D C  D+ ++  +++ + 
Sbjct: 309 LNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKD-CPLDDVTFNILVDFFC 367

Query: 445 SGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
             G VD  IEL E+M   G   +V+  T +I    K   ID+ V +       G KP+
Sbjct: 368 QNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPN 425



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/229 (21%), Positives = 93/229 (40%), Gaps = 1/229 (0%)

Query: 255 PDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYV 314
           P+  T+  ++      G++ + L + +     G  P P  + V+ +    SG +     V
Sbjct: 109 PNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRV 168

Query: 315 LQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK 374
           L+ M + G   +    N +L A+ + G    A  L  ++   G   D  +  A++K    
Sbjct: 169 LEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCM 228

Query: 375 ARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNY 434
           A+   D  EL + M       + + +NTL+      GL E    +   M     C PD  
Sbjct: 229 AKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMS-EHGCTPDIR 287

Query: 435 SYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483
            Y  +++     G+++ A E+   M   G+  NV+    +++ L  A R
Sbjct: 288 MYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAER 336



 Score = 47.8 bits (112), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 74/183 (40%), Gaps = 1/183 (0%)

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382
           V PN   +  ++  +   G+   A  + DEM   G  P       +++   ++   ++++
Sbjct: 107 VPPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSV 166

Query: 383 ELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNI 442
            + E M      +D    N +LN   + G V+EA  L   +     C+ D  SY A+L  
Sbjct: 167 RVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFG-CEADIVSYNAVLKG 225

Query: 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
                   +  EL +EM  +  A N++    LI  L +    + +  V     + G  PD
Sbjct: 226 LCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPD 285

Query: 503 DRL 505
            R+
Sbjct: 286 IRM 288



 Score = 45.1 bits (105), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 31/137 (22%), Positives = 62/137 (45%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + I Y+  +  L    + +   +L N MV+  I  + I YS+I     R    ++ I+ F
Sbjct: 495 DLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMF 554

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           + +  T +  D V Y+A++    K  + +  +  +   V++G  P+   +++L K     
Sbjct: 555 DNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASE 614

Query: 306 GDYDGIRYVLQEMKSLG 322
           G     + +L E+ S G
Sbjct: 615 GLAKEAQELLSELCSRG 631


>gi|414888267|tpg|DAA64281.1| TPA: hypothetical protein ZEAMMB73_921256 [Zea mays]
          Length = 873

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 117/484 (24%), Positives = 199/484 (41%), Gaps = 44/484 (9%)

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
           E L + M+   +  D ++Y  I+           A E F  M  TG   D   Y  +++ 
Sbjct: 271 EMLLHTMLEAGVSPDTVSYRHIVDAFASAGNLSRAAELFSEMAATGHTADASAYLGLMEA 330

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
           + + G   + +++  +  A G  P    + VL  ++G  G +DG+R + +EM++  V P+
Sbjct: 331 HTRVGATADAVAVLRQMQADGCAPTAATYRVLLDLYGRQGRFDGVRQLFREMRT-AVPPD 389

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
              YN L    G  G       LF +M+++G+ PD  T   ++   G      DA E+ E
Sbjct: 390 TATYNVLFRVFGDGGFFKEVVELFHDMLKTGVQPDMVTCENVMAACGHGGLHGDAREVLE 449

Query: 387 RM-RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445
            M RE   P     Y  L+       + EEA   F +M       P   +Y A+   Y  
Sbjct: 450 YMTREGMVPTA-DAYTGLVEALGHAAMYEEAYVAF-NMMTEIGSLPTLETYNALAFAYAR 507

Query: 446 GGNVDNAIELFEEMS-ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR 504
           GG    A  +F  MS   G+  +      LI+   +  R+DD V+ +         PD+R
Sbjct: 508 GGLFQEAEAIFSRMSNNAGIQKSKDSFDALIEAYCQGSRLDDAVKAYMEMRKSRFNPDER 567

Query: 505 LCGCLLSVVSLCETSEDVGKVITCLQQA--NPKLVAF----------------LNLIEDN 546
               +L+   +    ++  +    LQ +   P ++A+                 +L+E+ 
Sbjct: 568 SLEGVLNAYCIAGVIDESKEQFEELQSSVTMPSVIAYCMMLSLYARNDRWTDAYDLLEEM 627

Query: 547 STGFEN---------IKEEFRN---------VIKDTEV---DARRPFCNCLIDICRNRNL 585
            T   +         IK E+ +         V++++ +   D    F N L+ +      
Sbjct: 628 KTNRASSTHQVIASLIKGEYDDSSNWQMVEYVLENSTMEGCDYSFRFFNALLGVLWWFGQ 687

Query: 586 NERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAKIVLREEV 645
             RA  +L     +GL+P L+  T   WSLDV  +S+G A  A+  W+  L   ++ +E 
Sbjct: 688 KGRAARVLDQAVKFGLFPELYRDTKLVWSLDVHRMSMGGALVAVSVWLNKLYDRLVEDED 747

Query: 646 LPQL 649
           LPQL
Sbjct: 748 LPQL 751



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/345 (22%), Positives = 148/345 (42%), Gaps = 15/345 (4%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDN---I 223
           WQ+S   F +++ Q+    +   + + +  L  GRQ   +     E V +++  ++   +
Sbjct: 119 WQRSLRLFKYMQRQSWCRPDEHIHAIVIGVL--GRQGPALLDKCLE-VFHDLPAESRTAL 175

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK----VEEVLSL 279
           +Y+++I    R  L +EA    ++M  TG+ P   TY+ +L   A++       + +L L
Sbjct: 176 SYTSLIAAYARNALHEEARALLDQMKATGVAPTAATYNTVLAACARATDPPVPFDMLLGL 235

Query: 280 Y---ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA 336
           +       +   +PD   ++ L          D    +L  M   GV P+ V Y  +++A
Sbjct: 236 FAEMRHDASPSVRPDLTTYNTLLAAAAVRSLADQSEMLLHTMLEAGVSPDTVSYRHIVDA 295

Query: 337 MGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMD 396
              AG    A  LF EM  +G T D      L++ + +     DA+ +  +M+ +     
Sbjct: 296 FASAGNLSRAAELFSEMAATGHTADASAYLGLMEAHTRVGATADAVAVLRQMQADGCAPT 355

Query: 397 FILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELF 456
              Y  LL++    G  +   +LF +M+ +    PD  +Y  +  ++G GG     +ELF
Sbjct: 356 AATYRVLLDLYGRQGRFDGVRQLFREMRTA--VPPDTATYNVLFRVFGDGGFFKEVVELF 413

Query: 457 EEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
            +M + GV  +++ C  ++   G      D   V       G+ P
Sbjct: 414 HDMLKTGVQPDMVTCENVMAACGHGGLHGDAREVLEYMTREGMVP 458



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 56/277 (20%), Positives = 111/277 (40%), Gaps = 37/277 (13%)

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           P +T  YNV  +    G  F+ + +L ++M+   ++ D +T   ++       L  +A E
Sbjct: 387 PPDTATYNVLFRVFGDGGFFKEVVELFHDMLKTGVQPDMVTCENVMAACGHGGLHGDARE 446

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
             E M + G++P    Y+ +++    +   EE    +      G  P    ++ L   + 
Sbjct: 447 VLEYMTREGMVPTADAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTLETYNALAFAYA 506

Query: 304 ESGDYDGIRYVLQEMKS-LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
             G +     +   M +  G+Q +   ++ L+EA  +  +   A   + EM +S   PDE
Sbjct: 507 RGGLFQEAEAIFSRMSNNAGIQKSKDSFDALIEAYCQGSRLDDAVKAYMEMRKSRFNPDE 566

Query: 363 KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED 422
           ++L  ++  Y  A                                   G+++E++  FE+
Sbjct: 567 RSLEGVLNAYCIA-----------------------------------GVIDESKEQFEE 591

Query: 423 MKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           ++ S    P   +Y  ML++Y       +A +L EEM
Sbjct: 592 LQ-SSVTMPSVIAYCMMLSLYARNDRWTDAYDLLEEM 627



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 40/247 (16%)

Query: 161 LNSLKFWQKSYFFFNWIKSQNLFP-METIFYNVTMKSLRFGRQFQLIEQLANEMVSNE-I 218
           L     ++++Y  FN +      P +ET  YN    +   G  FQ  E + + M +N  I
Sbjct: 470 LGHAAMYEEAYVAFNMMTEIGSLPTLET--YNALAFAYARGGLFQEAEAIFSRMSNNAGI 527

Query: 219 ELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS 278
           +    ++  +I    + +  D+A++ +  M K+   PDE +   +L+ Y  +G ++E   
Sbjct: 528 QKSKDSFDALIEAYCQGSRLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCIAGVIDESKE 587

Query: 279 LYERGVASGWKPDPIAFSVLGKMFGES------------------------------GDY 308
            +E   +S   P  IA+ ++  ++  +                              G+Y
Sbjct: 588 QFEELQSSVTMPSVIAYCMMLSLYARNDRWTDAYDLLEEMKTNRASSTHQVIASLIKGEY 647

Query: 309 DG------IRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
           D       + YVL+     G   +   +N LL  +   G+ G A  + D+ V+ GL P+ 
Sbjct: 648 DDSSNWQMVEYVLENSTMEGCDYSFRFFNALLGVLWWFGQKGRAARVLDQAVKFGLFPEL 707

Query: 363 KTLTALI 369
              T L+
Sbjct: 708 YRDTKLV 714


>gi|242054883|ref|XP_002456587.1| hypothetical protein SORBIDRAFT_03g038900 [Sorghum bicolor]
 gi|241928562|gb|EES01707.1| hypothetical protein SORBIDRAFT_03g038900 [Sorghum bicolor]
          Length = 655

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 128/530 (24%), Positives = 222/530 (41%), Gaps = 30/530 (5%)

Query: 91  KSTWVNPTKPRRSVLSLQRQKRST----YSYNPRVRDLKLFARKLNDCDNTEEAFLRAIT 146
           KS W+NP  P    L  QR K +       +  R  D+      L+      +    A  
Sbjct: 23  KSVWLNPNLPTSHPLH-QRHKSAAELQQRQHEDRTIDVPALVTALSAARTAPDL---AAV 78

Query: 147 EIPHQPTRENAL-LILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQL 205
             PH+P     L  +L+ L   ++     + +      P   I YN+ ++S       +L
Sbjct: 79  LAPHRPVSVRLLGALLSRLPNPRRGVALLDLLAPDLPAPALLIPYNLLLRSSCRAGDLRL 138

Query: 206 IEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
              L  EM    +  D  +YST++    R    D A+ +   M    + PD + +S ++ 
Sbjct: 139 ASGLLLEMRERGVTPDAFSYSTLLAALTRAGHLDHALTFLPLMEDDAVAPDLILFSNLIH 198

Query: 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG-DYDGIRYVLQEMKSLGVQ 324
           +  + G   + L+L+ R  A+G +PD  A++     + +S    D  R +L +M + GV 
Sbjct: 199 LALRGGDAPKALALFSRLRAAGIRPDLKAYNAAVAAYCKSDLIRDAKRLLLHDMPADGVA 258

Query: 325 PNLVVYNTLLEAMGKAGKPGLARSLFDEM-VESGLTPDEKTLTALIKIYGKARWAKDALE 383
           P+   Y+ +L A+ + G+   A SLF  M   + + PD      ++  YG+   A++A  
Sbjct: 259 PDAETYSPILAALARRGRHLAAVSLFSHMRAVARVKPDLSVFNIILNAYGQLDLAREADR 318

Query: 384 LWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK--------LSDYCKPDNYS 435
           L+  MR    P   + YNT+L +  D GL  EA  LF+ M+             KP+  +
Sbjct: 319 LFWSMRRAGVPPSVVTYNTMLRVYGDAGLFGEAVHLFDLMRSASDGNGGAGSSVKPNVVT 378

Query: 436 YTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSI 495
           Y  M+ IYG     + A +L ++M  +GV  + +  + ++    KA ++D   ++F    
Sbjct: 379 YNTMIAIYGKSLEDEKAGKLVQDMQAIGVQPDAITYSTILSIWVKAGKLDRAAKLFEKLR 438

Query: 496 DRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQ--QANPKLVAFLNLIEDNSTGFENI 553
           + G + D  L   ++             +++  L+  +  PK  A   L   ++   E  
Sbjct: 439 EAGTEIDPVLYQTMVVAYERAGLVSQAKRLLRDLKDPEGIPKETAIKILA--SAGRLEEA 496

Query: 554 KEEFRNV-----IKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTL 598
              FR       IKD+ V   R   +      R+RN+ E   E+  LG L
Sbjct: 497 AWLFRRAANTGEIKDSSV--HRAMMDLYAKNRRHRNVIEVFDEMRKLGQL 544



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 82/325 (25%), Positives = 153/325 (47%), Gaps = 14/325 (4%)

Query: 198 RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDE 257
           R GR    +   ++      ++ D   ++ I+    + +L  EA   F  M + G+ P  
Sbjct: 273 RRGRHLAAVSLFSHMRAVARVKPDLSVFNIILNAYGQLDLAREADRLFWSMRRAGVPPSV 332

Query: 258 VTYSAILDVYAKSGKVEEVLSLYE---------RGVASGWKPDPIAFSVLGKMFGESGDY 308
           VTY+ +L VY  +G   E + L++          G  S  KP+ + ++ +  ++G+S + 
Sbjct: 333 VTYNTMLRVYGDAGLFGEAVHLFDLMRSASDGNGGAGSSVKPNVVTYNTMIAIYGKSLED 392

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
           +    ++Q+M+++GVQP+ + Y+T+L    KAGK   A  LF+++ E+G   D      +
Sbjct: 393 EKAGKLVQDMQAIGVQPDAITYSTILSIWVKAGKLDRAAKLFEKLREAGTEIDPVLYQTM 452

Query: 369 IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428
           +  Y +A     A  L   +R+ K P + I   T + + A  G +EEA  LF     +  
Sbjct: 453 VVAYERAGLVSQAKRL---LRDLKDP-EGIPKETAIKILASAGRLEEAAWLFRRAANTGE 508

Query: 429 CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLV 488
            K D+  + AM+++Y       N IE+F+EM +LG   +       +   GK +  D   
Sbjct: 509 IK-DSSVHRAMMDLYAKNRRHRNVIEVFDEMRKLGQLPDSETIATAMNAYGKLKDFDKAA 567

Query: 489 RVFGVSIDRGVKPDDRLCGCLLSVV 513
            ++    + G    DR+   ++S++
Sbjct: 568 ALYQAMREEGCVFSDRVHFQMISLL 592



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 137/304 (45%), Gaps = 15/304 (4%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTG-LMPDEVTYSAILDVY 267
           L ++M ++ +  D  TYS I+    R      A+  F  M     + PD   ++ IL+ Y
Sbjct: 248 LLHDMPADGVAPDAETYSPILAALARRGRHLAAVSLFSHMRAVARVKPDLSVFNIILNAY 307

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG----- 322
            +     E   L+     +G  P  + ++ + +++G++G +    ++   M+S       
Sbjct: 308 GQLDLAREADRLFWSMRRAGVPPSVVTYNTMLRVYGDAGLFGEAVHLFDLMRSASDGNGG 367

Query: 323 ----VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWA 378
               V+PN+V YNT++   GK+ +   A  L  +M   G+ PD  T + ++ I+ KA   
Sbjct: 368 AGSSVKPNVVTYNTMIAIYGKSLEDEKAGKLVQDMQAIGVQPDAITYSTILSIWVKAGKL 427

Query: 379 KDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTA 438
             A +L+E++RE    +D +LY T++      GLV +A+RL  D+K      P+      
Sbjct: 428 DRAAKLFEKLREAGTEIDPVLYQTMVVAYERAGLVSQAKRLLRDLK-----DPEGIPKET 482

Query: 439 MLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRG 498
            + I  S G ++ A  LF   +  G   +      ++    K RR  +++ VF      G
Sbjct: 483 AIKILASAGRLEEAAWLFRRAANTGEIKDSSVHRAMMDLYAKNRRHRNVIEVFDEMRKLG 542

Query: 499 VKPD 502
             PD
Sbjct: 543 QLPD 546



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 61/295 (20%), Positives = 133/295 (45%), Gaps = 14/295 (4%)

Query: 176 WIKSQNLFPMETIFYNVTMK----SLRFGRQFQLIEQL-----ANEMVSNEIELDNITYS 226
           W   +   P   + YN  ++    +  FG    L + +      N    + ++ + +TY+
Sbjct: 321 WSMRRAGVPPSVVTYNTMLRVYGDAGLFGEAVHLFDLMRSASDGNGGAGSSVKPNVVTYN 380

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T+I    +    ++A +  + M   G+ PD +TYS IL ++ K+GK++    L+E+   +
Sbjct: 381 TMIAIYGKSLEDEKAGKLVQDMQAIGVQPDAITYSTILSIWVKAGKLDRAAKLFEKLREA 440

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G + DP+ +  +   +  +G     + +L+++K     P  +   T ++ +  AG+   A
Sbjct: 441 GTEIDPVLYQTMVVAYERAGLVSQAKRLLRDLK----DPEGIPKETAIKILASAGRLEEA 496

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
             LF     +G   D     A++ +Y K R  ++ +E+++ MR+     D     T +N 
Sbjct: 497 AWLFRRAANTGEIKDSSVHRAMMDLYAKNRRHRNVIEVFDEMRKLGQLPDSETIATAMNA 556

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461
              +   ++A  L++ M+  + C   +  +  M+++ G+  +      L  E+S 
Sbjct: 557 YGKLKDFDKAAALYQAMR-EEGCVFSDRVHFQMISLLGAQKDFKALEVLVGELSH 610


>gi|115453829|ref|NP_001050515.1| Os03g0569800 [Oryza sativa Japonica Group]
 gi|113548986|dbj|BAF12429.1| Os03g0569800 [Oryza sativa Japonica Group]
          Length = 773

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 95/368 (25%), Positives = 169/368 (45%), Gaps = 40/368 (10%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + YN  +K L   +++  +E+L +EMV  +   + +T++T+I    R  LF+   E  
Sbjct: 215 DIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVL 274

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP--------------- 290
            +M + G  PD   Y+ I+D   K G +E    +  R  + G KP               
Sbjct: 275 AQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSA 334

Query: 291 --------------------DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
                               D + F++L   F ++G  D +  +L++M S G  P+++ Y
Sbjct: 335 ERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITY 394

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK-IYGKARWAKDALELWERMR 389
            T++    K G    A  L   M   G  P+  + T ++K +    RW  DA EL  +M 
Sbjct: 395 TTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWV-DAEELMSQMI 453

Query: 390 ENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNV 449
           +   P + + +NTL+N     GLVE+A  L + M L + C PD  SY+ +++  G  G  
Sbjct: 454 QQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQM-LVNGCSPDLISYSTVIDGLGKAGKT 512

Query: 450 DNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCL 509
           + A+EL   M   G++ N +  + +   L +  R++ ++++F    D  ++ D  L   +
Sbjct: 513 EEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAV 572

Query: 510 LSVVSLCE 517
           +S  SLC+
Sbjct: 573 IS--SLCK 578



 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 84/319 (26%), Positives = 158/319 (49%), Gaps = 5/319 (1%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
             N + S  L P   + YN  +K L    +++  E+L +EM   +  LD++T++ ++   
Sbjct: 308 ILNRMPSYGLKP-NVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFF 366

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +  L D  IE  E+M   G MPD +TY+ +++ + K G ++E + L +   + G KP+ 
Sbjct: 367 CQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNT 426

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           ++++++ K    +G +     ++ +M   G  PN V +NTL+  + K G    A  L  +
Sbjct: 427 VSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQ 486

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M+ +G +PD  + + +I   GKA   ++ALEL   M       + I+Y+++    +  G 
Sbjct: 487 MLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGR 546

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
           V +  ++F+++K +   + D   Y A+++        D AI+ F  M   G   N    T
Sbjct: 547 VNKVIQMFDNIKDTTI-RSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYT 605

Query: 473 CLIQCL---GKARRIDDLV 488
            LI+ L   G A+   +L+
Sbjct: 606 MLIKGLASEGLAKEAQELL 624



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/302 (24%), Positives = 143/302 (47%), Gaps = 1/302 (0%)

Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS 261
             ++  ++ N M S  ++ + + Y+T++        + EA E    M++     D+VT++
Sbjct: 301 HLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFN 360

Query: 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
            ++D + ++G V+ V+ L E+ ++ G  PD I ++ +   F + G  D    +L+ M S 
Sbjct: 361 ILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSC 420

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
           G +PN V Y  +L+ +  AG+   A  L  +M++ G  P+  T   LI    K    + A
Sbjct: 421 GCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQA 480

Query: 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
           +EL ++M  N    D I Y+T+++     G  EEA  L   M ++    P+   Y+++  
Sbjct: 481 IELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVM-VNKGISPNTIIYSSIAC 539

Query: 442 IYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
                G V+  I++F+ + +  +  + +    +I  L K    D  +  F   +  G  P
Sbjct: 540 ALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMP 599

Query: 502 DD 503
           ++
Sbjct: 600 NE 601



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 145/319 (45%), Gaps = 5/319 (1%)

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           PM  +      +S  F    +++E +  +  + +    N+  + I  C + C   DEA+ 
Sbjct: 147 PMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAI--CEQGC--VDEAVG 202

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
              ++   G   D V+Y+A+L     + +  +V  L +  V     P+ + F+ L     
Sbjct: 203 LLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLC 262

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
            +G ++ +  VL +M   G  P++ +Y T+++ + K G   +A  + + M   GL P+  
Sbjct: 263 RNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVV 322

Query: 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
               ++K    A   K+A EL   M +   P+D + +N L++     GLV+    L E M
Sbjct: 323 CYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQM 382

Query: 424 KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483
            LS  C PD  +YT ++N +   G +D A+ L + MS  G   N +  T +++ L  A R
Sbjct: 383 -LSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGR 441

Query: 484 IDDLVRVFGVSIDRGVKPD 502
             D   +    I +G  P+
Sbjct: 442 WVDAEELMSQMIQQGCPPN 460



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 61/276 (22%), Positives = 122/276 (44%), Gaps = 37/276 (13%)

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI- 242
           P++ + +N+ +           + +L  +M+S+    D ITY+T+I    +  L DEA+ 
Sbjct: 353 PLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVM 412

Query: 243 ----------------------------------EWFERMYKTGLMPDEVTYSAILDVYA 268
                                             E   +M + G  P+ VT++ +++   
Sbjct: 413 LLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLC 472

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           K G VE+ + L ++ + +G  PD I++S +    G++G  +    +L  M + G+ PN +
Sbjct: 473 KKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTI 532

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD-ALELWER 387
           +Y+++  A+ + G+      +FD + ++ +  D     A+I    K RW  D A++ +  
Sbjct: 533 IYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCK-RWETDRAIDFFAY 591

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
           M  N    +   Y  L+   A  GL +EA+ L  ++
Sbjct: 592 MVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSEL 627



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/298 (24%), Positives = 116/298 (38%), Gaps = 36/298 (12%)

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           +A+E  + M   G  P    Y  IL+   +SG     + + E   A G   D    +++ 
Sbjct: 129 DALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVL 188

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMV----- 354
               E G  D    +L+++   G + ++V YN +L+ +  A + G    L DEMV     
Sbjct: 189 NAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCA 248

Query: 355 ------------------------------ESGLTPDEKTLTALIKIYGKARWAKDALEL 384
                                         E G TPD +    +I    K    + A E+
Sbjct: 249 PNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEI 308

Query: 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYG 444
             RM       + + YNT+L         +EAE L  +M   D C  D+ ++  +++ + 
Sbjct: 309 LNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKD-CPLDDVTFNILVDFFC 367

Query: 445 SGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
             G VD  IEL E+M   G   +V+  T +I    K   ID+ V +       G KP+
Sbjct: 368 QNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPN 425



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/229 (21%), Positives = 93/229 (40%), Gaps = 1/229 (0%)

Query: 255 PDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYV 314
           P+  T+  ++      G++ + L + +     G  P P  + V+ +    SG +     V
Sbjct: 109 PNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRV 168

Query: 315 LQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK 374
           L+ M + G   +    N +L A+ + G    A  L  ++   G   D  +  A++K    
Sbjct: 169 LEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCM 228

Query: 375 ARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNY 434
           A+   D  EL + M       + + +NTL+      GL E    +   M     C PD  
Sbjct: 229 AKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMS-EHGCTPDIR 287

Query: 435 SYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483
            Y  +++     G+++ A E+   M   G+  NV+    +++ L  A R
Sbjct: 288 MYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAER 336



 Score = 47.8 bits (112), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 74/183 (40%), Gaps = 1/183 (0%)

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382
           V PN   +  ++  +   G+   A  + DEM   G  P       +++   ++   ++++
Sbjct: 107 VPPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSV 166

Query: 383 ELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNI 442
            + E M      +D    N +LN   + G V+EA  L   +     C+ D  SY A+L  
Sbjct: 167 RVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFG-CEADIVSYNAVLKG 225

Query: 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
                   +  EL +EM  +  A N++    LI  L +    + +  V     + G  PD
Sbjct: 226 LCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPD 285

Query: 503 DRL 505
            R+
Sbjct: 286 IRM 288



 Score = 45.1 bits (105), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 31/137 (22%), Positives = 62/137 (45%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + I Y+  +  L    + +   +L N MV+  I  + I YS+I     R    ++ I+ F
Sbjct: 495 DLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMF 554

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           + +  T +  D V Y+A++    K  + +  +  +   V++G  P+   +++L K     
Sbjct: 555 DNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASE 614

Query: 306 GDYDGIRYVLQEMKSLG 322
           G     + +L E+ S G
Sbjct: 615 GLAKEAQELLSELCSRG 631


>gi|224112321|ref|XP_002316152.1| predicted protein [Populus trichocarpa]
 gi|222865192|gb|EEF02323.1| predicted protein [Populus trichocarpa]
          Length = 785

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 119/509 (23%), Positives = 221/509 (43%), Gaps = 21/509 (4%)

Query: 185 METIFYNVTMK-SLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           ++T  YN+ MK  L  G  ++  E +   M +    LD  TY  +I    +    D A +
Sbjct: 225 IDTETYNILMKLFLNKGLPYKAFE-IYETMEAAHCSLDVSTYELMIPSLAKSGRLDAAFK 283

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
            F+ M +    P    +S+++D   K+G++E  + +Y      G +P  I +  L + + 
Sbjct: 284 LFQEMKERNFRPSLGIFSSLVDSMGKAGRLETSMKVYMEMQGLGLRPSAIMYVSLIESYT 343

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
           ++G  D    +  EMK  G +PN  +Y  ++E+  K+GK  +A S+F +M ++G  P   
Sbjct: 344 KAGKLDAALRLWDEMKIAGFRPNFGLYTLIIESHAKSGKLDIAMSIFRDMEKAGFLPTPS 403

Query: 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
           T ++L++++  +     A++L+  M           Y  LL + A   LV+ A ++  +M
Sbjct: 404 TYSSLLEMHAASGQVDAAMKLYNSMTNAGLRPGLSTYTALLTLLAHKKLVDVAAKILLEM 463

Query: 424 KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483
           K   +    + S + +L +Y   G+VD ++     MS  G+  N      L +   K   
Sbjct: 464 KAMGFSV--DVSASDVLMVYIKDGSVDLSLRWLRFMSSSGIRTNNFIIRQLFESCMKNGL 521

Query: 484 IDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLI 543
            +    +    ++   K D  L   +L+ +  C+  ++   ++  L     K  AF+  +
Sbjct: 522 YESAKPLLETYVNSAAKVDLILYTSILAYLVRCQEEQNERHLMAILSATRHKAHAFMCGL 581

Query: 544 -----EDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTL 598
                +        ++E F+ +  + E  A + F N L++         RA  +  +   
Sbjct: 582 FTGPEQRKQPVLSFVREFFQGIDYELEEGAAKYFVNVLLNYLVLMGQINRARCVWKVAYE 641

Query: 599 YGLYPGLHNKTLDE---WSLDVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQLFLAETG 655
             L+P       D+   WSLDVR+LSVGAA  A+   +    K +L   V+P+     TG
Sbjct: 642 NKLFP--KAIVFDQHIAWSLDVRNLSVGAALVAVVHTLHRFRKRMLYYGVIPRRIKLVTG 699

Query: 656 TGTHKFSQGLATAFASHVNKLAAPFRQSE 684
                    L    A  ++ + +PF  S+
Sbjct: 700 P-------TLRIVVAQMLSSVESPFEVSK 721



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/332 (24%), Positives = 156/332 (46%), Gaps = 9/332 (2%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIE--LDNITYSTIIT 230
            F W K Q  +      Y +    L   R F  I+ L +EMV + I+       Y+ ++ 
Sbjct: 141 LFKWAKRQTWYVPNDECYVMLFDGLNQSRDFDGIQSLFDEMVCDSIKSATQFSAYNRVLK 200

Query: 231 CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
              +    + +   F+++  +G   D  TY+ ++ ++   G   +   +YE   A+    
Sbjct: 201 YLAKAEKLEVSFCCFKKVQDSGCKIDTETYNILMKLFLNKGLPYKAFEIYETMEAAHCSL 260

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
           D   + ++     +SG  D    + QEMK    +P+L ++++L+++MGKAG+   +  ++
Sbjct: 261 DVSTYELMIPSLAKSGRLDAAFKLFQEMKERNFRPSLGIFSSLVDSMGKAGRLETSMKVY 320

Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
            EM   GL P      +LI+ Y KA     AL LW+ M+   +  +F LY  ++   A  
Sbjct: 321 MEMQGLGLRPSAIMYVSLIESYTKAGKLDAALRLWDEMKIAGFRPNFGLYTLIIESHAKS 380

Query: 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG 470
           G ++ A  +F DM+ + +  P   +Y+++L ++ + G VD A++L+  M+  G+   +  
Sbjct: 381 GKLDIAMSIFRDMEKAGFL-PTPSTYSSLLEMHAASGQVDAAMKLYNSMTNAGLRPGLST 439

Query: 471 CTCLIQCLGKARRIDDLVRVF------GVSID 496
            T L+  L   + +D   ++       G S+D
Sbjct: 440 YTALLTLLAHKKLVDVAAKILLEMKAMGFSVD 471


>gi|224083253|ref|XP_002306972.1| predicted protein [Populus trichocarpa]
 gi|222856421|gb|EEE93968.1| predicted protein [Populus trichocarpa]
          Length = 709

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 145/293 (49%), Gaps = 2/293 (0%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           W+ +      +++ N+ P   +F  + + S R   ++Q   Q+  EM ++ +  D + Y+
Sbjct: 391 WESARIVLKEMEASNVQPNAYVFSRI-LSSYRDKGEWQKSFQVLREMENSGVRPDRVFYN 449

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
            +I    + N  D A+  F+RM   G+ PD VT++ ++D + ++GK +    L+E  +  
Sbjct: 450 VMIDTFGKFNCLDHAMATFDRMLSEGIEPDTVTWNTLIDCHCRAGKHDRAEELFEEMMEG 509

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G+ P    F+++   FG+   +D ++ +L  M+S G+ PN V Y TL++  GK+G+   A
Sbjct: 510 GYSPCNTTFNIMINSFGDQERWDDVKNLLAHMRSQGLVPNSVTYTTLIDIYGKSGRFNDA 569

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
               D+M  +GL P      ALI  Y +   ++ A+  +  MR +      +  N+L+N 
Sbjct: 570 IECLDDMKAAGLKPSSTMYNALINAYAQRGLSEQAVSAFRAMRVDGLKPSLLALNSLINA 629

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
             +     EA  + + MK +D  KPD  +YT ++         D    ++EEM
Sbjct: 630 FGEDRRDAEAFTVLQYMKEND-LKPDVVTYTTLMKALIRVEKFDKVPSVYEEM 681



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/268 (28%), Positives = 138/268 (51%), Gaps = 6/268 (2%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLA--NEMVSNEIELDNIT 224
           WQKS+     +++  + P + +FYNV + +  FG+   L   +A  + M+S  IE D +T
Sbjct: 426 WQKSFQVLREMENSGVRP-DRVFYNVMIDT--FGKFNCLDHAMATFDRMLSEGIEPDTVT 482

Query: 225 YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
           ++T+I C  R    D A E FE M + G  P   T++ +++ +    + ++V +L     
Sbjct: 483 WNTLIDCHCRAGKHDRAEELFEEMMEGGYSPCNTTFNIMINSFGDQERWDDVKNLLAHMR 542

Query: 285 ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344
           + G  P+ + ++ L  ++G+SG ++     L +MK+ G++P+  +YN L+ A  + G   
Sbjct: 543 SQGLVPNSVTYTTLIDIYGKSGRFNDAIECLDDMKAAGLKPSSTMYNALINAYAQRGLSE 602

Query: 345 LARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
            A S F  M   GL P    L +LI  +G+ R   +A  + + M+EN    D + Y TL+
Sbjct: 603 QAVSAFRAMRVDGLKPSLLALNSLINAFGEDRRDAEAFTVLQYMKENDLKPDVVTYTTLM 662

Query: 405 NMCADIGLVEEAERLFEDMKLSDYCKPD 432
                +   ++   ++E+M LS  C PD
Sbjct: 663 KALIRVEKFDKVPSVYEEMILSG-CTPD 689



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 93/325 (28%), Positives = 145/325 (44%), Gaps = 9/325 (2%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG---KVEEVLSLY 280
           T   +I     C    EA   FE M   GL P    Y+A+L  Y K+G     E V+S  
Sbjct: 307 TLVAVIWALGNCGRTVEAEAIFEEMRDNGLKPRTRAYNALLRGYVKAGLLKDAEFVVSEM 366

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
           ER   SG  P+   +S L   +G +G ++  R VL+EM++  VQPN  V++ +L +    
Sbjct: 367 ER---SGVSPNEQTYSFLIDAYGNAGRWESARIVLKEMEASNVQPNAYVFSRILSSYRDK 423

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G+   +  +  EM  SG+ PD      +I  +GK      A+  ++RM       D + +
Sbjct: 424 GEWQKSFQVLREMENSGVRPDRVFYNVMIDTFGKFNCLDHAMATFDRMLSEGIEPDTVTW 483

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           NTL++     G  + AE LFE+M    Y  P N ++  M+N +G     D+   L   M 
Sbjct: 484 NTLIDCHCRAGKHDRAEELFEEMMEGGY-SPCNTTFNIMINSFGDQERWDDVKNLLAHMR 542

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSE 520
             G+  N +  T LI   GK+ R +D +         G+KP   +   L++  +    SE
Sbjct: 543 SQGLVPNSVTYTTLIDIYGKSGRFNDAIECLDDMKAAGLKPSSTMYNALINAYAQRGLSE 602

Query: 521 DVGKVITCLQ--QANPKLVAFLNLI 543
                   ++     P L+A  +LI
Sbjct: 603 QAVSAFRAMRVDGLKPSLLALNSLI 627



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 147/330 (44%), Gaps = 4/330 (1%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           F  ++   L P  T  YN  ++        +  E + +EM  + +  +  TYS +I    
Sbjct: 328 FEEMRDNGLKP-RTRAYNALLRGYVKAGLLKDAEFVVSEMERSGVSPNEQTYSFLIDAYG 386

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
               ++ A    + M  + + P+   +S IL  Y   G+ ++   +      SG +PD +
Sbjct: 387 NAGRWESARIVLKEMEASNVQPNAYVFSRILSSYRDKGEWQKSFQVLREMENSGVRPDRV 446

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
            ++V+   FG+    D        M S G++P+ V +NTL++   +AGK   A  LF+EM
Sbjct: 447 FYNVMIDTFGKFNCLDHAMATFDRMLSEGIEPDTVTWNTLIDCHCRAGKHDRAEELFEEM 506

Query: 354 VESGLTPDEKTLTALIKIYG-KARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           +E G +P   T   +I  +G + RW  D   L   MR      + + Y TL+++    G 
Sbjct: 507 MEGGYSPCNTTFNIMINSFGDQERW-DDVKNLLAHMRSQGLVPNSVTYTTLIDIYGKSGR 565

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
             +A    +DMK +   KP +  Y A++N Y   G  + A+  F  M   G+  +++   
Sbjct: 566 FNDAIECLDDMKAAG-LKPSSTMYNALINAYAQRGLSEQAVSAFRAMRVDGLKPSLLALN 624

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            LI   G+ RR  +   V     +  +KPD
Sbjct: 625 SLINAFGEDRRDAEAFTVLQYMKENDLKPD 654



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 140/295 (47%), Gaps = 1/295 (0%)

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
           E +  EM  N ++     Y+ ++    +  L  +A      M ++G+ P+E TYS ++D 
Sbjct: 325 EAIFEEMRDNGLKPRTRAYNALLRGYVKAGLLKDAEFVVSEMERSGVSPNEQTYSFLIDA 384

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
           Y  +G+ E    + +   AS  +P+   FS +   + + G++     VL+EM++ GV+P+
Sbjct: 385 YGNAGRWESARIVLKEMEASNVQPNAYVFSRILSSYRDKGEWQKSFQVLREMENSGVRPD 444

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
            V YN +++  GK      A + FD M+  G+ PD  T   LI  + +A     A EL+E
Sbjct: 445 RVFYNVMIDTFGKFNCLDHAMATFDRMLSEGIEPDTVTWNTLIDCHCRAGKHDRAEELFE 504

Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
            M E  +      +N ++N   D    ++ + L   M+ S    P++ +YT +++IYG  
Sbjct: 505 EMMEGGYSPCNTTFNIMINSFGDQERWDDVKNLLAHMR-SQGLVPNSVTYTTLIDIYGKS 563

Query: 447 GNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
           G  ++AIE  ++M   G+  +      LI    +    +  V  F      G+KP
Sbjct: 564 GRFNDAIECLDDMKAAGLKPSSTMYNALINAYAQRGLSEQAVSAFRAMRVDGLKP 618



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 90/397 (22%), Positives = 179/397 (45%), Gaps = 9/397 (2%)

Query: 180 QNLFPMETIFYNVTMKSLRFGRQFQ--LIEQLANEMVSNEIELDNITYSTIITCAKRCNL 237
           Q+ +P + + Y++ ++SL    +    ++++L  E+  +++ELD    + II    +   
Sbjct: 226 QDGYPSDFVNYSLIIRSLMRKNRVDSAILQKLYREIECDKLELDVQLSNDIIVGFAKAGD 285

Query: 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
             +A+E+   +  +GL     T  A++      G+  E  +++E    +G KP   A++ 
Sbjct: 286 LSKALEFLGVVQGSGLSVKTATLVAVIWALGNCGRTVEAEAIFEEMRDNGLKPRTRAYNA 345

Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
           L + + ++G      +V+ EM+  GV PN   Y+ L++A G AG+   AR +  EM  S 
Sbjct: 346 LLRGYVKAGLLKDAEFVVSEMERSGVSPNEQTYSFLIDAYGNAGRWESARIVLKEMEASN 405

Query: 358 LTPDEKTLTALIKIY-GKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEA 416
           + P+    + ++  Y  K  W K + ++   M  +    D + YN +++       ++ A
Sbjct: 406 VQPNAYVFSRILSSYRDKGEWQK-SFQVLREMENSGVRPDRVFYNVMIDTFGKFNCLDHA 464

Query: 417 ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
              F+ M LS+  +PD  ++  +++ +   G  D A ELFEEM E G +        +I 
Sbjct: 465 MATFDRM-LSEGIEPDTVTWNTLIDCHCRAGKHDRAEELFEEMMEGGYSPCNTTFNIMIN 523

Query: 477 CLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--P 534
             G   R DD+  +      +G+ P+      L+ +        D  + +  ++ A   P
Sbjct: 524 SFGDQERWDDVKNLLAHMRSQGLVPNSVTYTTLIDIYGKSGRFNDAIECLDDMKAAGLKP 583

Query: 535 KLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRP 571
               +  LI  N+     + E+  +  +   VD  +P
Sbjct: 584 SSTMYNALI--NAYAQRGLSEQAVSAFRAMRVDGLKP 618



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 111/477 (23%), Positives = 196/477 (41%), Gaps = 48/477 (10%)

Query: 170 SYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTII 229
           +Y    W++  NL     + Y++ + +L  G+  +L E     ++S    L  +TY+ +I
Sbjct: 151 AYAVVLWLQKHNLCFSYELLYSILIHAL--GQSEKLYEAF---LLSQRQNLTPLTYNALI 205

Query: 230 TCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAI-------------------------- 263
           +   R N  ++A+    RM + G   D V YS I                          
Sbjct: 206 SACARNNDLEKALNLITRMRQDGYPSDFVNYSLIIRSLMRKNRVDSAILQKLYREIECDK 265

Query: 264 --LDV---------YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIR 312
             LDV         +AK+G + + L        SG          +    G  G      
Sbjct: 266 LELDVQLSNDIIVGFAKAGDLSKALEFLGVVQGSGLSVKTATLVAVIWALGNCGRTVEAE 325

Query: 313 YVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIY 372
            + +EM+  G++P    YN LL    KAG    A  +  EM  SG++P+E+T + LI  Y
Sbjct: 326 AIFEEMRDNGLKPRTRAYNALLRGYVKAGLLKDAEFVVSEMERSGVSPNEQTYSFLIDAY 385

Query: 373 GKA-RWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
           G A RW    + L E    N  P  ++ ++ +L+   D G  +++ ++  +M+ S   +P
Sbjct: 386 GNAGRWESARIVLKEMEASNVQPNAYV-FSRILSSYRDKGEWQKSFQVLREMENSG-VRP 443

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           D   Y  M++ +G    +D+A+  F+ M   G+  + +    LI C  +A + D    +F
Sbjct: 444 DRVFYNVMIDTFGKFNCLDHAMATFDRMLSEGIEPDTVTWNTLIDCHCRAGKHDRAEELF 503

Query: 492 GVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAFLNLIE-DNST 548
              ++ G  P +     +++     E  +DV  ++  ++     P  V +  LI+    +
Sbjct: 504 EEMMEGGYSPCNTTFNIMINSFGDQERWDDVKNLLAHMRSQGLVPNSVTYTTLIDIYGKS 563

Query: 549 GFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGL 605
           G  N   E  + +K   +       N LI+    R L+E+A        + GL P L
Sbjct: 564 GRFNDAIECLDDMKAAGLKPSSTMYNALINAYAQRGLSEQAVSAFRAMRVDGLKPSL 620



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 102/201 (50%), Gaps = 4/201 (1%)

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           P  T F N+ + S     ++  ++ L   M S  +  +++TY+T+I    +   F++AIE
Sbjct: 513 PCNTTF-NIMINSFGDQERWDDVKNLLAHMRSQGLVPNSVTYTTLIDIYGKSGRFNDAIE 571

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
             + M   GL P    Y+A+++ YA+ G  E+ +S +      G KP  +A + L   FG
Sbjct: 572 CLDDMKAAGLKPSSTMYNALINAYAQRGLSEQAVSAFRAMRVDGLKPSLLALNSLINAFG 631

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
           E         VLQ MK   ++P++V Y TL++A+ +  K     S+++EM+ SG TPD K
Sbjct: 632 EDRRDAEAFTVLQYMKENDLKPDVVTYTTLMKALIRVEKFDKVPSVYEEMILSGCTPDRK 691

Query: 364 TLTALIKIYGKARWAKDALEL 384
              A   +    ++ K  LEL
Sbjct: 692 ---ARAMLRSALKYMKQTLEL 709


>gi|4038037|gb|AAC97219.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1107

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/339 (25%), Positives = 162/339 (47%), Gaps = 16/339 (4%)

Query: 179 SQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELD--NITYSTIITCAKRCN 236
           ++N F      Y +    L   R +     +  EMV ++ + D  ++ +ST   C     
Sbjct: 2   TRNGFKHSVESYCIVAHILFCARMYYDANSVLKEMVLSKADCDVFDVLWSTRNVCVPGFG 61

Query: 237 LFD-------------EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           +FD             EAI+ F +M +  + P   + + +L  +AK GK ++V   ++  
Sbjct: 62  VFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDM 121

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
           + +G +P    ++++     + GD +  R + +EMK  G+ P+ V YN++++  GK G+ 
Sbjct: 122 IGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRL 181

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
                 F+EM +    PD  T  ALI  + K       LE +  M+ N    + + Y+TL
Sbjct: 182 DDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTL 241

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           ++     G++++A + + DM+      P+ Y+YT++++     GN+ +A  L  EM ++G
Sbjct: 242 VDAFCKEGMMQQAIKFYVDMRRVGLV-PNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVG 300

Query: 464 VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           V  NV+  T LI  L  A R+ +   +FG     GV P+
Sbjct: 301 VEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPN 339



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 96/403 (23%), Positives = 184/403 (45%), Gaps = 19/403 (4%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           Q++  F+  ++   L P E  + ++   + + G       +L NEM+   +E + +TY+ 
Sbjct: 252 QQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAF-RLGNEMLQVGVEWNVVTYTA 310

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           +I          EA E F +M   G++P+  +Y+A++  + K+  ++  L L       G
Sbjct: 311 LIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRG 370

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
            KPD + +             +  + V+ EMK  G++ N ++Y TL++A  K+G P    
Sbjct: 371 IKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGL 430

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN-KWPMDFILYNTLLN- 405
            L DEM E  +     T   LI    K +    A++ + R+  +     +  ++  +++ 
Sbjct: 431 HLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDG 490

Query: 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
           +C D   VE A  LFE M +     PD  +YT++++     GNV  A+ L ++M+E+G+ 
Sbjct: 491 LCKD-NQVEAATTLFEQM-VQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMK 548

Query: 466 INVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKV 525
           ++++  T L+  L    ++          I  G+ PD+ LC      +S+ +   ++G  
Sbjct: 549 LDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLC------ISVLKKHYELG-- 600

Query: 526 ITCLQQA---NPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTE 565
             C+ +A      L+    L  DN     NI  + +N++   E
Sbjct: 601 --CIDEAVELQSYLMKHQLLTSDNDNALPNIYSD-QNLVSSRE 640


>gi|115445449|ref|NP_001046504.1| Os02g0266200 [Oryza sativa Japonica Group]
 gi|50251963|dbj|BAD27898.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536035|dbj|BAF08418.1| Os02g0266200 [Oryza sativa Japonica Group]
 gi|125581581|gb|EAZ22512.1| hypothetical protein OsJ_06176 [Oryza sativa Japonica Group]
 gi|215704610|dbj|BAG94238.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215737116|dbj|BAG96045.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 632

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 94/321 (29%), Positives = 160/321 (49%), Gaps = 19/321 (5%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVT---MKSLRFGRQFQLIEQLANEMVSNEIELDNITY 225
           ++Y F++ ++ ++  P   +  N+     K+ R     +L E++    VS+ I  + +TY
Sbjct: 318 EAYHFYHEMQREDCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMG---VSHCIP-NVVTY 373

Query: 226 STIITCAKRCNLFD------EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
           +TII       LF+      E   WFERM  +G+ P   TYS ++D + K+ ++E+ + L
Sbjct: 374 NTIIKA-----LFESKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMML 428

Query: 280 YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
            E     G+ P P A+  L    G++  YD    + QE+K      +  VY  +++ +GK
Sbjct: 429 LEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGK 488

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
           AG+   A +LFDEM + G TP+     AL+    +A    +AL    +M+E+    D   
Sbjct: 489 AGRLDDAINLFDEMSKLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINS 548

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           YN +LN  A  G    A  +  +MK S   KPD  SY  +L+     G  + A EL +EM
Sbjct: 549 YNIILNGLAKTGGPHRAMEMLTNMKNST-IKPDAVSYNTVLSALSHAGMFEEAAELMKEM 607

Query: 460 SELGVAINVMGCTCLIQCLGK 480
           + LG   +++  + +++ +GK
Sbjct: 608 NALGFEYDLITYSSILEAIGK 628



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 93/355 (26%), Positives = 164/355 (46%), Gaps = 6/355 (1%)

Query: 160 ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNE-- 217
           +L + K   K+   F  IK++   P    + ++ +  +  G Q++ + +L NEM SNE  
Sbjct: 168 MLGNAKMIGKAITIFYQIKARKCQPTAQAYNSMIIMLIHEG-QYEKVHELYNEM-SNEGH 225

Query: 218 IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL 277
              D +TYS +I+   +    D AI     M + G+ P    Y+ I+ ++ K   V   L
Sbjct: 226 CHPDTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFKLDNVHGAL 285

Query: 278 SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
           SL+E       +PD   ++ L +  G++G  D   +   EM+    +P+ VV N ++  +
Sbjct: 286 SLFEEMRYMYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQREDCKPDTVVMNNMINFL 345

Query: 338 GKAGKPGLARSLFDEMVESGLTPDEKTLTALIK-IYGKARWAKDALELWERMRENKWPMD 396
           GKAG+      LF+EM  S   P+  T   +IK ++       +    +ERM+ +     
Sbjct: 346 GKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERMKGSGISPS 405

Query: 397 FILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELF 456
              Y+ L++       +E+A  L E+M    +  P   +Y ++++  G     D A ELF
Sbjct: 406 PFTYSILIDGFCKTNRIEKAMMLLEEMDEKGF-PPCPAAYCSLIDALGKAKRYDLACELF 464

Query: 457 EEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
           +E+ E   + +      +I+ LGKA R+DD + +F      G  P+      L+S
Sbjct: 465 QELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMS 519



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 93/358 (25%), Positives = 169/358 (47%), Gaps = 9/358 (2%)

Query: 151 QPTRE---NALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSL-RFGRQFQLI 206
           QPT +   + +++L     ++K +  +N + ++     +T+ Y+  + +  + GRQ   I
Sbjct: 191 QPTAQAYNSMIIMLIHEGQYEKVHELYNEMSNEGHCHPDTVTYSALISAFCKLGRQDSAI 250

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
            +L NEM  N ++     Y+ II+   + +    A+  FE M      PD  TY+ ++  
Sbjct: 251 -RLLNEMKENGMQPTAKIYTMIISLFFKLDNVHGALSLFEEMRYMYCRPDVFTYTELIRG 309

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
             K+G+++E    Y        KPD +  + +    G++G  D    + +EM      PN
Sbjct: 310 LGKAGRIDEAYHFYHEMQREDCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPN 369

Query: 327 LVVYNTLLEAMGKA-GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
           +V YNT+++A+ ++  +     S F+ M  SG++P   T + LI  + K    + A+ L 
Sbjct: 370 VVTYNTIIKALFESKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLL 429

Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYS-YTAMLNIYG 444
           E M E  +P     Y +L++        + A  LF+++K  + C   +   Y  M+   G
Sbjct: 430 EEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELK--ENCGSSSARVYAVMIKHLG 487

Query: 445 SGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
             G +D+AI LF+EMS+LG   NV     L+  L +A  +D+ +       + G  PD
Sbjct: 488 KAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPD 545



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 103/437 (23%), Positives = 176/437 (40%), Gaps = 19/437 (4%)

Query: 83  RTPLLSKPKSTWVNPTKPRRSVLSLQRQKRSTYSYNPRVRDL--KLFARKLNDCDNTEEA 140
           R P L   +    +P   RR   +     +   + +PR  D    L  R  N     +E 
Sbjct: 4   RAPCLLAARGIASSPHLARRLKQTENEIVQMFRTPSPRNEDAVAALSPRYTNSVRVLDER 63

Query: 141 FLRAITEIPHQPTRENALLILN-SLKFW------------QKSYFFFNWIKSQNLFPMET 187
           F+R +      P  E AL +L   +  W                 FF W   +  +  +T
Sbjct: 64  FIRILKIFKWGPDAERALEVLMLRVDHWLVREVMKTDVGVNVKMQFFRWAAKKRNYQHDT 123

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEI-ELDNITYSTIITCAKRCNLFDEAIEWFE 246
             Y   +  L    Q+  + ++  EMV + I  +  +  S +I       +  +AI  F 
Sbjct: 124 STYMALIHCLELVEQYGEMWKMIQEMVRSPICVVTPMELSQVIRMLGNAKMIGKAITIFY 183

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW-KPDPIAFSVLGKMFGES 305
           ++      P    Y++++ +    G+ E+V  LY      G   PD + +S L   F + 
Sbjct: 184 QIKARKCQPTAQAYNSMIIMLIHEGQYEKVHELYNEMSNEGHCHPDTVTYSALISAFCKL 243

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G  D    +L EMK  G+QP   +Y  ++    K      A SLF+EM      PD  T 
Sbjct: 244 GRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFKLDNVHGALSLFEEMRYMYCRPDVFTY 303

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
           T LI+  GKA    +A   +  M+      D ++ N ++N     G +++  +LFE+M +
Sbjct: 304 TELIRGLGKAGRIDEAYHFYHEMQREDCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGV 363

Query: 426 SDYCKPDNYSYTAMLN-IYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484
           S +C P+  +Y  ++  ++ S   V      FE M   G++ +    + LI    K  RI
Sbjct: 364 S-HCIPNVVTYNTIIKALFESKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRI 422

Query: 485 DDLVRVFGVSIDRGVKP 501
           +  + +     ++G  P
Sbjct: 423 EKAMMLLEEMDEKGFPP 439



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 127/275 (46%), Gaps = 2/275 (0%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD-V 266
              +EM   + + D +  + +I    +    D+ ++ FE M  +  +P+ VTY+ I+  +
Sbjct: 321 HFYHEMQREDCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKAL 380

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
           +    +V EV S +ER   SG  P P  +S+L   F ++   +    +L+EM   G  P 
Sbjct: 381 FESKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPC 440

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
              Y +L++A+GKA +  LA  LF E+ E+  +   +    +IK  GKA    DA+ L++
Sbjct: 441 PAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFD 500

Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
            M +     +   YN L++  A   +++EA      M+    C PD  SY  +LN     
Sbjct: 501 EMSKLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQ-EHGCLPDINSYNIILNGLAKT 559

Query: 447 GNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
           G    A+E+   M    +  + +    ++  L  A
Sbjct: 560 GGPHRAMEMLTNMKNSTIKPDAVSYNTVLSALSHA 594


>gi|410110061|gb|AFV61110.1| pentatricopeptide repeat-containing protein 123, partial
           [Acantholippia seriphioides]
          Length = 416

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 148/292 (50%), Gaps = 7/292 (2%)

Query: 212 EMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG 271
           EM    +  D  TYST+IT   +  LFD A+ W ++M +  +  D V YS ++++  K  
Sbjct: 1   EMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLC 60

Query: 272 KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYN 331
              + +S++ R   SG+ PD +A++ +  +FG++  +   R ++ EMK  GV PN   Y+
Sbjct: 61  DYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKXSGVMPNTASYS 120

Query: 332 TLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN 391
           TLL    +  K   A S+F EM E     D  T   +I +YG+   AK+A +L+  MR+ 
Sbjct: 121 TLLTMYVENKKFLEALSVFSEMREVKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 180

Query: 392 KWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDN 451
               + + YNTLL +  D  L  EA  LF  M+  +  + +  +Y +M+ IYG     + 
Sbjct: 181 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKN-IEQNVVTYNSMIMIYGKTLEHEK 239

Query: 452 AIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF------GVSIDR 497
           A  L +EM   G+  N +  + +I   GK  ++D    +F      GV ID+
Sbjct: 240 ANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQ 291



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 81/345 (23%), Positives = 165/345 (47%), Gaps = 6/345 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K     P + + YN  +      + F+    L +EM  + +  +  +YS
Sbjct: 62  YSKAISIFSRLKRSGFTP-DLVAYNAMINVFGKAKLFREARSLISEMKXSGVMPNTASYS 120

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY + G  +E   L+      
Sbjct: 121 TLLTMYVENKKFLEALSVFSEMREVKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 180

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   ++ N+V YN+++   GK  +   A
Sbjct: 181 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKA 240

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R +   +D IL+ T++  
Sbjct: 241 NNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVA 300

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K     +PDN      ++I    G ++ A  +F +  + G   
Sbjct: 301 YERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVK 355

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
           ++     +I  L K ++  ++V VF      G  PD  +   +L+
Sbjct: 356 DITVFERMIHLLSKYKKYANVVEVFDKMRGLGYFPDSDVIALVLN 400



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 125/265 (47%), Gaps = 1/265 (0%)

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M +  L PD  TYS ++  + K G  +  LS  ++        D + +S L ++  +  D
Sbjct: 2   MRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCD 61

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
           Y     +   +K  G  P+LV YN ++   GKA     ARSL  EM  SG+ P+  + + 
Sbjct: 62  YSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKXSGVMPNTASYST 121

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           L+ +Y + +   +AL ++  MRE K  +D    N ++++   +G+ +EA++LF  M+   
Sbjct: 122 LLTMYVENKKFLEALSVFSEMREVKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 181

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
             +P+  SY  +L +YG       AI LF  M    +  NV+    +I   GK    +  
Sbjct: 182 -IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKA 240

Query: 488 VRVFGVSIDRGVKPDDRLCGCLLSV 512
             +      RG++P+      ++S+
Sbjct: 241 NNLIQEMQSRGIEPNSITYSTIISI 265



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 96/217 (44%), Gaps = 1/217 (0%)

Query: 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
           EM+   + P+   Y+TL+   GK G    A S   +M +  +  D    + LI++  K  
Sbjct: 1   EMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLC 60

Query: 377 WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY 436
               A+ ++ R++ + +  D + YN ++N+     L  EA  L  +MK S    P+  SY
Sbjct: 61  DYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKXSG-VMPNTASY 119

Query: 437 TAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496
           + +L +Y        A+ +F EM E+   +++  C  +I   G+     +  ++F     
Sbjct: 120 STLLTMYVENKKFLEALSVFSEMREVKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK 179

Query: 497 RGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN 533
            G++P+      LL V    E   +   +   +Q+ N
Sbjct: 180 MGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKN 216



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 76/166 (45%), Gaps = 4/166 (2%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  EM S  IE ++ITYSTII+   +    D A   F+++  +G+  D++ +  ++  Y 
Sbjct: 243 LIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYE 302

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           ++G V       +R +    +PD I       +   +G  +   YV ++    G   ++ 
Sbjct: 303 RAGLVAHA----KRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDIT 358

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK 374
           V+  ++  + K  K      +FD+M   G  PD   +  ++  YGK
Sbjct: 359 VFERMIHLLSKYKKYANVVEVFDKMRGLGYFPDSDVIALVLNAYGK 404


>gi|242050480|ref|XP_002462984.1| hypothetical protein SORBIDRAFT_02g035800 [Sorghum bicolor]
 gi|241926361|gb|EER99505.1| hypothetical protein SORBIDRAFT_02g035800 [Sorghum bicolor]
          Length = 668

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 86/323 (26%), Positives = 142/323 (43%), Gaps = 34/323 (10%)

Query: 214 VSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKV 273
           ++ EI+     Y+ ++    R      A +  + M + G+ PDE TYS ++D Y ++G+ 
Sbjct: 291 LAGEIKPRTRAYNALLKGYVRIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRW 350

Query: 274 EEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTL 333
           E    L +   A G KP    FS +   F + GD+     VL+EM++ GV+P+   YN +
Sbjct: 351 ESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVM 410

Query: 334 LEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKW 393
           ++  GK    G A   FD M E  + PD  T   LI  + K      A+EL+E MRE+  
Sbjct: 411 IDTFGKYNCLGHAMDAFDRMREEEIEPDVVTWNTLIDAHCKGGRHDRAMELFEEMRESNC 470

Query: 394 PMDFILYNTLLNMCADIGLVEEAERLFEDMK----------------------------- 424
           P     YN ++N+  +    E  E +  +MK                             
Sbjct: 471 PPGTTTYNIMINLLGEQERWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAID 530

Query: 425 -----LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479
                 +D  KP    Y A++N Y   G  D+A+ + + M   G+ ++++    LI   G
Sbjct: 531 CIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMKADGLEVSILVLNSLINAFG 590

Query: 480 KARRIDDLVRVFGVSIDRGVKPD 502
           + RR+ +   V     + G++PD
Sbjct: 591 EDRRVVEAFSVLQFMKENGLRPD 613



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 82/362 (22%), Positives = 156/362 (43%), Gaps = 37/362 (10%)

Query: 205 LIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAIL 264
           L+E+L  ++  + +E D   +S +I+   R  L D A+E        GL P     +A++
Sbjct: 211 LLERLLGDLRESRLEPDAPLFSDLISAFARAALPDAALELLASAQAIGLTPRSNAVTALI 270

Query: 265 DVYAKSGKVEEVLSLY------------------------------------ERGVASGW 288
                +G+V E  +L+                                    +     G 
Sbjct: 271 SALGSAGRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVRIGSLKNAEQVLDEMSQCGV 330

Query: 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348
            PD   +S+L   +  +G ++  R +L+EM++ GV+P+  V++ +L      G    A +
Sbjct: 331 APDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFA 390

Query: 349 LFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCA 408
           +  EM  SG+ PD      +I  +GK      A++ ++RMRE +   D + +NTL++   
Sbjct: 391 VLREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEEIEPDVVTWNTLIDAHC 450

Query: 409 DIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINV 468
             G  + A  LFE+M+ S+ C P   +Y  M+N+ G     +    +  EM E G+  N+
Sbjct: 451 KGGRHDRAMELFEEMRESN-CPPGTTTYNIMINLLGEQERWEGVEAMLSEMKEQGLVPNI 509

Query: 469 MGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITC 528
           +  T L+   G++ R  + +         G+KP   +   L++  +    ++    V+  
Sbjct: 510 ITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKA 569

Query: 529 LQ 530
           ++
Sbjct: 570 MK 571



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 141/299 (47%), Gaps = 2/299 (0%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           W+ +      +++  + P   +F  + +   R    +Q    +  EM ++ +  D   Y+
Sbjct: 350 WESARILLKEMEADGVKPSSYVFSRI-LAGFRDRGDWQKAFAVLREMQASGVRPDRHFYN 408

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
            +I    + N    A++ F+RM +  + PD VT++ ++D + K G+ +  + L+E    S
Sbjct: 409 VMIDTFGKYNCLGHAMDAFDRMREEEIEPDVVTWNTLIDAHCKGGRHDRAMELFEEMRES 468

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
              P    ++++  + GE   ++G+  +L EMK  G+ PN++ Y TL++  G++G+   A
Sbjct: 469 NCPPGTTTYNIMINLLGEQERWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEA 528

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
               + M   GL P      AL+  Y +   A  AL + + M+ +   +  ++ N+L+N 
Sbjct: 529 IDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMKADGLEVSILVLNSLINA 588

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
             +   V EA  + + MK  +  +PD  +YT ++         D    ++EEM   G A
Sbjct: 589 FGEDRRVVEAFSVLQFMK-ENGLRPDVITYTTLMKALIRVEQFDKVPVIYEEMITSGCA 646



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 96/196 (48%), Gaps = 1/196 (0%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F  ++  N  P  T  YN+ +  L    +++ +E + +EM    +  + ITY+T++   
Sbjct: 461 LFEEMRESNC-PPGTTTYNIMINLLGEQERWEGVEAMLSEMKEQGLVPNIITYTTLVDVY 519

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            R   + EAI+  E M   GL P    Y A+++ YA+ G  +  L++ +   A G +   
Sbjct: 520 GRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMKADGLEVSI 579

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           +  + L   FGE         VLQ MK  G++P+++ Y TL++A+ +  +      +++E
Sbjct: 580 LVLNSLINAFGEDRRVVEAFSVLQFMKENGLRPDVITYTTLMKALIRVEQFDKVPVIYEE 639

Query: 353 MVESGLTPDEKTLTAL 368
           M+ SG  PD K    L
Sbjct: 640 MITSGCAPDRKARAML 655



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 79/180 (43%), Gaps = 3/180 (1%)

Query: 325 PNLVVYNTLLEAMGKAGKP---GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
           P+L  Y+ LL ++     P    L   L  ++ ES L PD    + LI  + +A     A
Sbjct: 188 PDLASYSHLLASLLNTRDPPDAALLERLLGDLRESRLEPDAPLFSDLISAFARAALPDAA 247

Query: 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
           LEL    +             L++     G V EAE LF +  L+   KP   +Y A+L 
Sbjct: 248 LELLASAQAIGLTPRSNAVTALISALGSAGRVAEAEALFLEFFLAGEIKPRTRAYNALLK 307

Query: 442 IYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
            Y   G++ NA ++ +EMS+ GVA +    + L+    +A R +    +       GVKP
Sbjct: 308 GYVRIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKP 367


>gi|115436822|ref|NP_001043145.1| Os01g0505500 [Oryza sativa Japonica Group]
 gi|56201654|dbj|BAD73118.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113532676|dbj|BAF05059.1| Os01g0505500 [Oryza sativa Japonica Group]
 gi|125570544|gb|EAZ12059.1| hypothetical protein OsJ_01942 [Oryza sativa Japonica Group]
          Length = 540

 Score =  130 bits (326), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 98/369 (26%), Positives = 173/369 (46%), Gaps = 38/369 (10%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           FF W + Q  F      ++  +++L   +QF+L+  L   M      L   T+  I+   
Sbjct: 140 FFRWAERQQGFRYSAEGFHNLIEALGKIKQFRLVWSLVEAMRCRSC-LSKDTFKIIVRRY 198

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG-WKPD 291
            R     EA+E FE+M   GL  D   Y+ ++D+ +KS +V++  ++++     G + PD
Sbjct: 199 ARARKVKEAVETFEKMSSFGLKTDLSDYNWLIDILSKSKQVKKAHAIFKEMKRKGRFIPD 258

Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
              ++VL + +G   D   ++ V QEM   G++P++V Y  L+ A  K+GK   A  +F 
Sbjct: 259 LKTYTVLMEGWGHEKDLLMLKAVYQEMLDAGIKPDVVAYGMLISAFCKSGKCDEAIKVFH 318

Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMD--------------- 396
           EM ESG  P       LI   G      +AL+ ++  +E+ +PM+               
Sbjct: 319 EMEESGCMPSPHVYCMLINGLGSMERLDEALKYFQLSKESGFPMEVPTCNAVIGAYCRAL 378

Query: 397 -----FIL---------------YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY 436
                F +               Y+ +LN       +EEA  LF+ M+  D C+P+  +Y
Sbjct: 379 EFHHAFKMVDEMRKSGIGPNTRTYDIILNHLIKSEKIEEAYNLFQRME-RDGCEPELNTY 437

Query: 437 TAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496
           T M+ ++ S   VD A++++++M E GV   +   + LI  L    R+++    F   +D
Sbjct: 438 TMMVGMFCSNERVDMALKVWKQMKEKGVLPCMHMFSALINGLCFENRLEEACVYFQEMLD 497

Query: 497 RGVKPDDRL 505
           +G++P  +L
Sbjct: 498 KGIRPPGQL 506



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/304 (22%), Positives = 141/304 (46%), Gaps = 3/304 (0%)

Query: 160 ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIE 219
           IL+  K  +K++  F  +K +  F  +   Y V M+     +   +++ +  EM+   I+
Sbjct: 232 ILSKSKQVKKAHAIFKEMKRKGRFIPDLKTYTVLMEGWGHEKDLLMLKAVYQEMLDAGIK 291

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
            D + Y  +I+   +    DEAI+ F  M ++G MP    Y  +++      +++E L  
Sbjct: 292 PDVVAYGMLISAFCKSGKCDEAIKVFHEMEESGCMPSPHVYCMLINGLGSMERLDEALKY 351

Query: 280 YERGVASGWKPD-PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMG 338
           ++    SG+  + P   +V+G  +  + ++     ++ EM+  G+ PN   Y+ +L  + 
Sbjct: 352 FQLSKESGFPMEVPTCNAVIGA-YCRALEFHHAFKMVDEMRKSGIGPNTRTYDIILNHLI 410

Query: 339 KAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFI 398
           K+ K   A +LF  M   G  P+  T T ++ ++        AL++W++M+E        
Sbjct: 411 KSEKIEEAYNLFQRMERDGCEPELNTYTMMVGMFCSNERVDMALKVWKQMKEKGVLPCMH 470

Query: 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458
           +++ L+N       +EEA   F++M L    +P    ++ +      GG +  A E+ + 
Sbjct: 471 MFSALINGLCFENRLEEACVYFQEM-LDKGIRPPGQLFSNLKEALVEGGRITLAQEVTQR 529

Query: 459 MSEL 462
           +  L
Sbjct: 530 LEML 533



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 94/182 (51%), Gaps = 4/182 (2%)

Query: 330 YNTLLEAMGKAGKPGLARSLFDEM-VESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
           ++ L+EA+GK  +  L  SL + M   S L+ D  T   +++ Y +AR  K+A+E +E+M
Sbjct: 157 FHNLIEALGKIKQFRLVWSLVEAMRCRSCLSKD--TFKIIVRRYARARKVKEAVETFEKM 214

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
                  D   YN L+++ +    V++A  +F++MK      PD  +YT ++  +G   +
Sbjct: 215 SSFGLKTDLSDYNWLIDILSKSKQVKKAHAIFKEMKRKGRFIPDLKTYTVLMEGWGHEKD 274

Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGC 508
           +     +++EM + G+  +V+    LI    K+ + D+ ++VF    + G  P   +  C
Sbjct: 275 LLMLKAVYQEMLDAGIKPDVVAYGMLISAFCKSGKCDEAIKVFHEMEESGCMPSPHVY-C 333

Query: 509 LL 510
           +L
Sbjct: 334 ML 335



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/225 (21%), Positives = 97/225 (43%), Gaps = 9/225 (4%)

Query: 130 KLNDCDNTEEAFLRAITEIPHQPTRENALLILNSLKFWQK-----SYFFFNWIKSQNLFP 184
           K   CD   + F   + E    P+     +++N L   ++      YF    +  ++ FP
Sbjct: 306 KSGKCDEAIKVF-HEMEESGCMPSPHVYCMLINGLGSMERLDEALKYF---QLSKESGFP 361

Query: 185 METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEW 244
           ME    N  + +     +F    ++ +EM  + I  +  TY  I+    +    +EA   
Sbjct: 362 MEVPTCNAVIGAYCRALEFHHAFKMVDEMRKSGIGPNTRTYDIILNHLIKSEKIEEAYNL 421

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
           F+RM + G  P+  TY+ ++ ++  + +V+  L ++++    G  P    FS L      
Sbjct: 422 FQRMERDGCEPELNTYTMMVGMFCSNERVDMALKVWKQMKEKGVLPCMHMFSALINGLCF 481

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSL 349
               +      QEM   G++P   +++ L EA+ + G+  LA+ +
Sbjct: 482 ENRLEEACVYFQEMLDKGIRPPGQLFSNLKEALVEGGRITLAQEV 526


>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 1011

 Score =  130 bits (326), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 142/288 (49%), Gaps = 1/288 (0%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           +TY+ II    R  L DEAIE    M   GL+PD  TY  +++ +    +  E   +   
Sbjct: 251 VTYNVIIGGLCRARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLE 310

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
            +  G KP+PI ++ L   F   GD +    +  EM + G++ NL+++NTLL  + KAGK
Sbjct: 311 MIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGK 370

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
              A  +  EM+E G+ PD +T + LI+ + + +    A EL + M++ K     + Y+ 
Sbjct: 371 MEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSV 430

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
           ++N     G ++    +  +M ++   KP+   YT ++  +   G V+ +  + E M E 
Sbjct: 431 IINGLCRCGNLQGTNAILREMVMNGL-KPNAVVYTTLMTAHAKEGRVEESRMILERMREQ 489

Query: 463 GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
           G+  +V     LI    KA+R+++        ++R ++P+    G  +
Sbjct: 490 GILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFI 537



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/324 (27%), Positives = 152/324 (46%), Gaps = 3/324 (0%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
            +++  F+ ++ + L P    + ++   S + G       QL  EM    I  D +TY+ 
Sbjct: 617 HEAFGIFSELQEKGLLPNAFTYNSLISGSCKQG-NVDKASQLLEEMCIKGINPDIVTYNI 675

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           +I    +    + A   F+ +   GL P+ VTY+A++D Y KS        L E  +  G
Sbjct: 676 LIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRG 735

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
             PD   ++V+     +   ++    + QEM   G   + V +NTL+E   K+GK   A 
Sbjct: 736 VPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGF-ASTVSFNTLIEGYCKSGKLQEAN 794

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
            L +EM+E    P+  T T+LI    KA    +A  LW  M+E         Y +LL+  
Sbjct: 795 HLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGY 854

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
            +IG + E   LFE+M ++   +PD  +Y  M++ Y   GNV  A +L +E+   G+ ++
Sbjct: 855 HNIGNMSEVSALFEEM-VAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMS 913

Query: 468 VMGCTCLIQCLGKARRIDDLVRVF 491
           V     LIQ L K     +++++ 
Sbjct: 914 VAAYDALIQALCKKEEFFEVLKLL 937



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 103/408 (25%), Positives = 187/408 (45%), Gaps = 15/408 (3%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQ---LANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
           E I YN  +    F RQ   IEQ   + +EMV+  IE + I ++T++    +    ++A+
Sbjct: 319 EPITYNALIDG--FMRQGD-IEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKAL 375

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
           E  + M + G+ PD  TYS +++ + +   +     L +        P  + +SV+    
Sbjct: 376 EIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGL 435

Query: 303 GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
              G+  G   +L+EM   G++PN VVY TL+ A  K G+   +R + + M E G+ PD 
Sbjct: 436 CRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDV 495

Query: 363 KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED 422
               +LI  + KA+  ++A      M E +   +   Y   ++  +  G +E A+R F +
Sbjct: 496 FCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNE 555

Query: 423 MKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKAR 482
           M LS    P+   YTA++  +   GNV  A  +F  +    V  +V   + LI  L +  
Sbjct: 556 M-LSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNG 614

Query: 483 RIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI--TCLQQANPKLVAFL 540
           ++ +   +F    ++G+ P+      L+S        +   +++   C++  NP +V + 
Sbjct: 615 KMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYN 674

Query: 541 NLIEDNSTGFENIKEEFRNVIKDTEVDARRPFC---NCLID-ICRNRN 584
            LI+      E   E  +N+  D E     P C     ++D  C+++N
Sbjct: 675 ILIDGLCKAGE--IERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKN 720



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 142/300 (47%), Gaps = 2/300 (0%)

Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS 261
           + ++ ++  NEM+S  +  +   Y+ +I    +     EA   F  +    ++ D  TYS
Sbjct: 545 EMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYS 604

Query: 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
            ++   +++GK+ E   ++      G  P+   ++ L     + G+ D    +L+EM   
Sbjct: 605 VLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIK 664

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
           G+ P++V YN L++ + KAG+   A++LFD++   GLTP+  T  A++  Y K++    A
Sbjct: 665 GINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAA 724

Query: 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
            +L E M     P D  +YN +LN C      E+A  LF++M    +      S+  ++ 
Sbjct: 725 FQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGF--ASTVSFNTLIE 782

Query: 442 IYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
            Y   G +  A  L EEM E     N +  T LI    KA  + +  R++    +R V P
Sbjct: 783 GYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMP 842



 Score = 99.4 bits (246), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 135/291 (46%), Gaps = 1/291 (0%)

Query: 212 EMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG 271
           EM+   ++ + ITY+ +I    R    ++A    + M   G+  + + ++ +L+   K+G
Sbjct: 310 EMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAG 369

Query: 272 KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYN 331
           K+E+ L + +  +  G +PD   +S+L +      +      +L EMK   + P ++ Y+
Sbjct: 370 KMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYS 429

Query: 332 TLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN 391
            ++  + + G      ++  EMV +GL P+    T L+  + K    +++  + ERMRE 
Sbjct: 430 VIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQ 489

Query: 392 KWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDN 451
               D   YN+L+        +EEA     +M L    +P+ ++Y A ++ Y   G ++ 
Sbjct: 490 GILPDVFCYNSLIIGFCKAKRMEEARTYLMEM-LERRLRPNAHTYGAFIDGYSKAGEMEI 548

Query: 452 AIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           A   F EM   GV  NV   T LI+   K   + +   VF   + R V  D
Sbjct: 549 ADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQD 599



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 67/317 (21%), Positives = 132/317 (41%), Gaps = 36/317 (11%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           +++ +  ++   ++     EA+  F         P  ++ +++L    K  KVE    ++
Sbjct: 144 NSVIFDMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELFWKVF 203

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
           +   A    PD   ++ +     + G+    + VL EM   G  PNLV YN ++  + +A
Sbjct: 204 DGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIGGLCRA 263

Query: 341 ----GKPGLARSLFD-------------------------------EMVESGLTPDEKTL 365
                   L RS+ D                               EM++ GL P+  T 
Sbjct: 264 RLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITY 323

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
            ALI  + +    + A  + + M       + I++NTLLN     G +E+A  + ++M +
Sbjct: 324 NALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEM-M 382

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
               +PD+ +Y+ ++  +  G N+  A EL +EM +  +A  V+  + +I  L +   + 
Sbjct: 383 EKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQ 442

Query: 486 DLVRVFGVSIDRGVKPD 502
               +    +  G+KP+
Sbjct: 443 GTNAILREMVMNGLKPN 459



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/207 (22%), Positives = 96/207 (46%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
           T+ +N  ++      + Q    L  EM+  +   +++TY+++I    +  +  EA   + 
Sbjct: 774 TVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWL 833

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
            M +  +MP   TY+++L  Y   G + EV +L+E  VA G +PD + + V+   +   G
Sbjct: 834 EMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREG 893

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
           +      +  E+   G+  ++  Y+ L++A+ K  +      L +E+ ESG      T +
Sbjct: 894 NVMEACKLKDEILVKGMPMSVAAYDALIQALCKKEEFFEVLKLLNEIGESGFRLGLPTCS 953

Query: 367 ALIKIYGKARWAKDALELWERMRENKW 393
            + + +  A    +A E+   M +  W
Sbjct: 954 VIARGFQIAGNMDEAAEVLRSMVKFGW 980


>gi|410110145|gb|AFV61152.1| pentatricopeptide repeat-containing protein 123, partial [Nashia
           inaguensis]
          Length = 433

 Score =  130 bits (326), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 90/293 (30%), Positives = 148/293 (50%), Gaps = 7/293 (2%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
           +EM    +  D  TYST+IT   +  LFD A  W ++M +  +  D + YS ++++  K 
Sbjct: 1   DEMRQRALSPDRYTYSTLITHFGKEGLFDAAXSWLQKMEQDQVPGDLILYSNLIELSXKL 60

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
               + +S++ R   SG+ PD +A++ +  +FG++  +   R ++ EMK+ GV PN   Y
Sbjct: 61  CDYSKAISIFSRLKRSGFXPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSY 120

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
           +TLL    +  K   A S+F EM E     D  T   +I +YG+   AK+A +L+  MR+
Sbjct: 121 STLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK 180

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
                  + YNTLL +  D  L  EA  LF  M+  +  + +  +Y +M+ IYG     +
Sbjct: 181 MGIEPSVVSYNTLLRVYGDAELFGEAIHLFRLMQRKN-IEQNVVTYNSMMMIYGKTLEHE 239

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF------GVSIDR 497
            A  L +EM   G+  N +  + +I   GK  ++D    +F      GV ID+
Sbjct: 240 KANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQ 292



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/367 (22%), Positives = 170/367 (46%), Gaps = 6/367 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K     P + + YN  +      + F+    L +EM +  +  +  +YS
Sbjct: 63  YSKAISIFSRLKRSGFXP-DLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYS 121

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY + G  +E   L+      
Sbjct: 122 TLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 181

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P  ++++ L +++G++  +    ++ + M+   ++ N+V YN+++   GK  +   A
Sbjct: 182 GIEPSVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKA 241

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R +   +D IL+ T++  
Sbjct: 242 NNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVA 301

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K     +PDN      ++I    G ++ A  +F +  + G   
Sbjct: 302 YERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGXVK 356

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           ++     +I  L K ++  ++V VF      G  PD  +   +L+     +  +    V 
Sbjct: 357 DITVFERMIHLLSKYKKYSNVVEVFDKXRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVY 416

Query: 527 TCLQQAN 533
             +Q+  
Sbjct: 417 MEMQEVG 423



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 95/217 (43%), Gaps = 1/217 (0%)

Query: 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
           EM+   + P+   Y+TL+   GK G    A S   +M +  +  D    + LI++  K  
Sbjct: 2   EMRQRALSPDRYTYSTLITHFGKEGLFDAAXSWLQKMEQDQVPGDLILYSNLIELSXKLC 61

Query: 377 WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY 436
               A+ ++ R++ + +  D + YN ++N+     L  EA  L  +MK +    P+  SY
Sbjct: 62  DYSKAISIFSRLKRSGFXPDLVAYNAMINVFGKAKLFREARSLISEMKTAG-VMPNTTSY 120

Query: 437 TAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496
           + +L +Y        A+ +F EM E+   +++  C  +I   G+     +  ++F     
Sbjct: 121 STLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK 180

Query: 497 RGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN 533
            G++P       LL V    E   +   +   +Q+ N
Sbjct: 181 MGIEPSVVSYNTLLRVYGDAELFGEAIHLFRLMQRKN 217


>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
 gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
          Length = 609

 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 85/280 (30%), Positives = 141/280 (50%), Gaps = 2/280 (0%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           +L   MV+  +  + +TYS +I    +   F EA E  E M   G+ PD  TYSA++   
Sbjct: 270 KLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGL 329

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            K+ K+EE   +  R   SG  PD + +S +   F +SG     +  LQEM+     P++
Sbjct: 330 CKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDV 389

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESG-LTPDEKTLTALIKIYGKARWAKDALELWE 386
           V YNT+++ + K GK   A+ + ++M ESG + PD  T + +I    K+    +A +L +
Sbjct: 390 VTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLD 449

Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
           RM +     D + Y T+++     G +EEAE L + MK +  C P+  +YT +++     
Sbjct: 450 RMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAG-CAPNVVTYTTLISGLCKA 508

Query: 447 GNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
             VD A  + EEM   G   N++    ++  L  + RI +
Sbjct: 509 RKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKE 548



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 87/364 (23%), Positives = 164/364 (45%), Gaps = 36/364 (9%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
            + ++S    P   + Y   + +    ++ +   +L  EM       + +TY+ ++    
Sbjct: 167 MDHLRSMGCDP-NVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALC 225

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
           + ++   A +  ++M + G  P+ +T+++++D + K G V++   L    VA G +P+ +
Sbjct: 226 KLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVV 285

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
            +S L     +S  +   + VL+EMK+ GV P+   Y+ L+  + KA K   A  +   M
Sbjct: 286 TYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRM 345

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
             SG TPD    +++I  + K+    +A +  + MR+ +   D + YNT+++    +G +
Sbjct: 346 AGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKI 405

Query: 414 EEAERLFEDM------------------------------KLSDY-----CKPDNYSYTA 438
            EA+ + E M                              KL D      C PD  +YT 
Sbjct: 406 AEAQVILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTT 465

Query: 439 MLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRG 498
           +++     G ++ A  L + M   G A NV+  T LI  L KAR++D+  RV     + G
Sbjct: 466 IIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAG 525

Query: 499 VKPD 502
             P+
Sbjct: 526 CPPN 529



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 133/285 (46%), Gaps = 3/285 (1%)

Query: 177 IKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCN 236
           +K++ + P +   Y+  +  L    + +  EQ+   M  +    D + YS+II    +  
Sbjct: 310 MKTRGVTP-DAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSG 368

Query: 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG-WKPDPIAF 295
              EA +  + M K    PD VTY+ ++D   K GK+ E   + E+   SG   PD + +
Sbjct: 369 KLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTY 428

Query: 296 SVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVE 355
           S +     +S      + +L  M   G  P++V Y T+++ + K G+   A  L   M  
Sbjct: 429 STVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKR 488

Query: 356 SGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEE 415
           +G  P+  T T LI    KAR   +A  + E MR    P + + YNT++N     G ++E
Sbjct: 489 AGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKE 548

Query: 416 AERLFEDMKLSDY-CKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           A++L + MK     C PD  +Y  ++N   S   V  A +L E+M
Sbjct: 549 AQQLVQRMKDGRAECSPDAATYRTIVNALMSSDLVQEAEQLLEQM 593



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 120/244 (49%), Gaps = 5/244 (2%)

Query: 199 FGRQFQLIE--QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTG-LMP 255
           F +  +L+E  +   EM       D +TY+T+I    +     EA    E+M ++G ++P
Sbjct: 364 FCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLP 423

Query: 256 DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVL 315
           D VTYS +++   KS  + E   L +R   +G  PD + ++ +     + G  +   Y+L
Sbjct: 424 DVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLL 483

Query: 316 QEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA 375
           Q MK  G  PN+V Y TL+  + KA K   A  + +EM  +G  P+  T   ++     +
Sbjct: 484 QGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVS 543

Query: 376 RWAKDALELWERMRENKWPM--DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDN 433
              K+A +L +RM++ +     D   Y T++N      LV+EAE+L E MK +   + + 
Sbjct: 544 GRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSSDLVQEAEQLLEQMKSTTSSQQEQ 603

Query: 434 YSYT 437
            S T
Sbjct: 604 GSLT 607



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/328 (23%), Positives = 148/328 (45%), Gaps = 9/328 (2%)

Query: 160 ILNSLKFWQKSYFFFNWI-KSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEI 218
           ++NSLK  + +  FF W   S   F      +N  ++ L   ++ +    L    +    
Sbjct: 49  VVNSLKDAKLALAFFRWAPASIPGFSHTAFSWNSLLQVLVRCKKHREAGDLFRSELLASC 108

Query: 219 ELDNITYSTIITCAKRCNLFD--EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV 276
           E D  +Y+ +I+    CN  D   A+E  E M   G  PD  T++ I+   A +G ++  
Sbjct: 109 EPDVCSYNIVIS--GFCNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGA 166

Query: 277 LSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA 336
           +       + G  P+ + ++ L   F  +   +    +L+EM+  G  PNLV YN L++A
Sbjct: 167 MDHLR---SMGCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDA 223

Query: 337 MGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMD 396
           + K    G A+ +  +M+E G  P+  T  +L+  + K     DA +L   M       +
Sbjct: 224 LCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPN 283

Query: 397 FILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELF 456
            + Y+ L++         EA+ + E+MK      PD ++Y+A+++       ++ A ++ 
Sbjct: 284 VVTYSALIDGLCKSQKFLEAKEVLEEMKTRGV-TPDAFTYSALIHGLCKADKIEEAEQML 342

Query: 457 EEMSELGVAINVMGCTCLIQCLGKARRI 484
             M+  G   +V+  + +I    K+ ++
Sbjct: 343 RRMAGSGCTPDVVVYSSIIHAFCKSGKL 370



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 75/173 (43%), Gaps = 4/173 (2%)

Query: 330 YNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMR 389
           +N+LL+ + +  K   A  LF   + +   PD  +   +I  +  A     ALEL E M+
Sbjct: 80  WNSLLQVLVRCKKHREAGDLFRSELLASCEPDVCSYNIVISGFCNAGDLHAALELLEEMK 139

Query: 390 ENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNV 449
              +  D   +  ++   A+ G ++ A      M     C P+  +YTA++  +     +
Sbjct: 140 SAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSMG----CDPNVVTYTALIAAFARAKKL 195

Query: 450 DNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           + A++L EEM E G   N++    L+  L K   +     V    I+ G  P+
Sbjct: 196 EEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPN 248


>gi|357117807|ref|XP_003560653.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Brachypodium distachyon]
          Length = 692

 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 89/359 (24%), Positives = 161/359 (44%), Gaps = 34/359 (9%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + YN  +       + + +E+L  EM       D +TY+ ++ C  +    + A  +F
Sbjct: 228 DVVTYNSLIDGYGKCGELEEVEKLVGEMRGCGCRPDVVTYNALVNCFCKFGRMERAYSYF 287

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
             M + G+M + VT+S  +D + K+G V E + L+ +    G KP+ + ++ L     ++
Sbjct: 288 AEMKREGVMANVVTFSTFVDAFCKNGMVREAMKLFAQMRMKGMKPNEVTYTCLVDGTCKA 347

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G  D    +  EM   GV  N+V Y  L++ + K GK   A  +F  M  +G+  +E   
Sbjct: 348 GRLDDALVLTNEMVQQGVPLNVVTYTVLVDGLCKEGKVAEAEDVFRLMERAGIRANELLY 407

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM-- 423
           T LI  +   + ++ AL L   M++    +D  LY  L+    ++  ++EA+ L   M  
Sbjct: 408 TTLIHGHFVYKNSERALSLLSEMKDKGMELDVSLYGALIWGLCNLQKLDEAKSLLNKMDE 467

Query: 424 -----------KLSDYC---------------------KPDNYSYTAMLNIYGSGGNVDN 451
                       + D C                     +P+  +Y A+++     G++D 
Sbjct: 468 CGLKPNNVIYTNIMDACFKARKESEAIALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDE 527

Query: 452 AIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
           AI  F +M +LG+  NV   T L+  L K  R+D  V +    ID+G+  D+ +C  L+
Sbjct: 528 AISHFNKMVDLGLEPNVQAYTALVDGLCKNGRLDKAVLLLDEMIDKGMSLDNVVCTSLM 586



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 147/310 (47%), Gaps = 9/310 (2%)

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           EA     RM   G  PD VTY++++D Y K G++EEV  L       G +PD + ++ L 
Sbjct: 212 EARALLARMKAIGCSPDVVTYNSLIDGYGKCGELEEVEKLVGEMRGCGCRPDVVTYNALV 271

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
             F + G  +       EMK  GV  N+V ++T ++A  K G    A  LF +M   G+ 
Sbjct: 272 NCFCKFGRMERAYSYFAEMKREGVMANVVTFSTFVDAFCKNGMVREAMKLFAQMRMKGMK 331

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
           P+E T T L+    KA    DAL L   M +   P++ + Y  L++     G V EAE +
Sbjct: 332 PNEVTYTCLVDGTCKAGRLDDALVLTNEMVQQGVPLNVVTYTVLVDGLCKEGKVAEAEDV 391

Query: 420 FEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479
           F  M+ +   + +   YT +++ +    N + A+ L  EM + G+ ++V     LI  L 
Sbjct: 392 FRLMERAGI-RANELLYTTLIHGHFVYKNSERALSLLSEMKDKGMELDVSLYGALIWGLC 450

Query: 480 KARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQA-----NP 534
             +++D+   +     + G+KP++ +     +++  C  +    + I  LQ+       P
Sbjct: 451 NLQKLDEAKSLLNKMDECGLKPNNVI---YTNIMDACFKARKESEAIALLQKMMDSGFRP 507

Query: 535 KLVAFLNLIE 544
            +V +  L++
Sbjct: 508 NIVTYCALVD 517



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 125/256 (48%), Gaps = 5/256 (1%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNL--FDEAIEWFERMYKTGLMPDEVTYSAILDV 266
           L +EM    +ELD   Y  +I     CNL   DEA     +M + GL P+ V Y+ I+D 
Sbjct: 426 LLSEMKDKGMELDVSLYGALIW--GLCNLQKLDEAKSLLNKMDECGLKPNNVIYTNIMDA 483

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
             K+ K  E ++L ++ + SG++P+ + +  L     ++G  D       +M  LG++PN
Sbjct: 484 CFKARKESEAIALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAISHFNKMVDLGLEPN 543

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
           +  Y  L++ + K G+   A  L DEM++ G++ D    T+L+  + K    +DA  L  
Sbjct: 544 VQAYTALVDGLCKNGRLDKAVLLLDEMIDKGMSLDNVVCTSLMDGHLKQGNLQDAFALKA 603

Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
           +M  +   +D   Y   +    ++ +++EA  +  +M + +   PD   Y  ++N     
Sbjct: 604 KMINSGLQLDLYGYTCFVWGFCNLNMIQEAREVLSEM-IENGITPDAVVYNCLINKCQKL 662

Query: 447 GNVDNAIELFEEMSEL 462
           GN++ A  L  EM  L
Sbjct: 663 GNMEEAAILQNEMESL 678



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 78/339 (23%), Positives = 153/339 (45%), Gaps = 2/339 (0%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F  ++ + + P E  +  +   + + GR    +  L NEMV   + L+ +TY+ ++   
Sbjct: 321 LFAQMRMKGMKPNEVTYTCLVDGTCKAGRLDDAL-VLTNEMVQQGVPLNVVTYTVLVDGL 379

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +     EA + F  M + G+  +E+ Y+ ++  +      E  LSL       G + D 
Sbjct: 380 CKEGKVAEAEDVFRLMERAGIRANELLYTTLIHGHFVYKNSERALSLLSEMKDKGMELDV 439

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
             +  L          D  + +L +M   G++PN V+Y  +++A  KA K   A +L  +
Sbjct: 440 SLYGALIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIYTNIMDACFKARKESEAIALLQK 499

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M++SG  P+  T  AL+    KA    +A+  + +M +     +   Y  L++     G 
Sbjct: 500 MMDSGFRPNIVTYCALVDGLCKAGSIDEAISHFNKMVDLGLEPNVQAYTALVDGLCKNGR 559

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
           +++A  L ++M +      DN   T++++ +   GN+ +A  L  +M   G+ +++ G T
Sbjct: 560 LDKAVLLLDEM-IDKGMSLDNVVCTSLMDGHLKQGNLQDAFALKAKMINSGLQLDLYGYT 618

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
           C +        I +   V    I+ G+ PD  +  CL++
Sbjct: 619 CFVWGFCNLNMIQEAREVLSEMIENGITPDAVVYNCLIN 657



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 110/218 (50%)

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
           + L N+M    ++ +N+ Y+ I+    +     EAI   ++M  +G  P+ VTY A++D 
Sbjct: 459 KSLLNKMDECGLKPNNVIYTNIMDACFKARKESEAIALLQKMMDSGFRPNIVTYCALVDG 518

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
             K+G ++E +S + + V  G +P+  A++ L     ++G  D    +L EM   G+  +
Sbjct: 519 LCKAGSIDEAISHFNKMVDLGLEPNVQAYTALVDGLCKNGRLDKAVLLLDEMIDKGMSLD 578

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
            VV  +L++   K G    A +L  +M+ SGL  D    T  +  +      ++A E+  
Sbjct: 579 NVVCTSLMDGHLKQGNLQDAFALKAKMINSGLQLDLYGYTCFVWGFCNLNMIQEAREVLS 638

Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
            M EN    D ++YN L+N C  +G +EEA  L  +M+
Sbjct: 639 EMIENGITPDAVVYNCLINKCQKLGNMEEAAILQNEME 676



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 97/219 (44%), Gaps = 5/219 (2%)

Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
           P     L  +  + G  D     L  ++ L V PN    N +L  + +     LA  LF+
Sbjct: 128 PSVVDTLLSLLADRGLLDDAVLALARVRELRVPPNTRTCNHILLCLARERSSELAWRLFE 187

Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411
           ++      P+  T   +I    K     +A  L  RM+      D + YN+L++     G
Sbjct: 188 QLP----APNVFTFNIMIDFLCKEGDLAEARALLARMKAIGCSPDVVTYNSLIDGYGKCG 243

Query: 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC 471
            +EE E+L  +M+    C+PD  +Y A++N +   G ++ A   F EM   GV  NV+  
Sbjct: 244 ELEEVEKLVGEMRGCG-CRPDVVTYNALVNCFCKFGRMERAYSYFAEMKREGVMANVVTF 302

Query: 472 TCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
           +  +    K   + + +++F     +G+KP++    CL+
Sbjct: 303 STFVDAFCKNGMVREAMKLFAQMRMKGMKPNEVTYTCLV 341


>gi|125557843|gb|EAZ03379.1| hypothetical protein OsI_25524 [Oryza sativa Indica Group]
          Length = 716

 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 86/342 (25%), Positives = 171/342 (50%), Gaps = 6/342 (1%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN+ +  L  G + +   ++ +EM    +  + +T + ++    +    +EA + FE   
Sbjct: 257 YNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESAS 316

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
           + G  PD VTY +++D   K G+V+E   L+E+ + +G   +P+ ++ L + F   G  +
Sbjct: 317 QRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKE 376

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               V +E+   G +P+L + NT ++ + KAG+    R +F+++   G  PD ++ + LI
Sbjct: 377 DGHKVFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILI 436

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
               KA  A++   ++  M++  + +D   YN +++     G V +A  + E+MK  + C
Sbjct: 437 HGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMK--EKC 494

Query: 430 -KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLV 488
            +P   +Y A+++       +D A  LFEE    G+ +NV+  + LI   GK  RID+  
Sbjct: 495 VQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAY 554

Query: 489 RVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQ 530
            +    + +G+ P+      LL  +     +E++ + + C Q
Sbjct: 555 LILEEMMKKGLTPNVYTWNSLLDALV---KAEEINEALVCFQ 593



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/306 (26%), Positives = 152/306 (49%), Gaps = 4/306 (1%)

Query: 199 FGRQFQLIEQLA--NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPD 256
             R+ Q+ + LA  +E+  + +E D + Y+  I C  +    D A ++F  +   GL PD
Sbjct: 90  LAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMACKFFHELKAQGLKPD 149

Query: 257 EVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQ 316
           +V+Y++++ V  K+G++ E   L+ +  A    P   A++ +   +G +G ++    +L+
Sbjct: 150 DVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLE 209

Query: 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
            ++  G  P++V +N++L  +GK  K   A SLF E+++    P+  T   +I +     
Sbjct: 210 RLRERGCIPSVVSFNSILTCLGKKRKVDEALSLF-EVMKKDAEPNSSTYNIIIDMLCLGG 268

Query: 377 WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY 436
             ++A  + + M       + +  N +++       +EEA ++FE       C PD  +Y
Sbjct: 269 RVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRG-CNPDCVTY 327

Query: 437 TAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496
            ++++  G  G VD A  LFE+M + G   N +  T LI+      R +D  +VF   I 
Sbjct: 328 CSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKVFKELIR 387

Query: 497 RGVKPD 502
           RG KPD
Sbjct: 388 RGCKPD 393



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 145/301 (48%), Gaps = 11/301 (3%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
            Y+ +I         + A+E   +M + G       ++ ++   A+ G+V + L+L +  
Sbjct: 47  AYTVLIGALAEARRPERALELLRQMQEVGYEVGVHLFTTLVRALAREGQVADALALVDEV 106

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
             S  +PD + ++V    FG++G+ D       E+K+ G++P+ V Y +++  + KAG+ 
Sbjct: 107 KGSCLEPDIVLYNVCIDCFGKAGNVDMACKFFHELKAQGLKPDDVSYTSMIWVLCKAGRL 166

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
           G A  LF +M      P       +I  YG A   +DA +L ER+RE       + +N++
Sbjct: 167 GEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSI 226

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           L        V+EA  LFE MK     +P++ +Y  ++++   GG V+ A  + +EM    
Sbjct: 227 LTCLGKKRKVDEALSLFEVMKKD--AEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHAS 284

Query: 464 VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVG 523
           +  N++    ++  L KAR++++  ++F  +  RG  PD          V+ C   + +G
Sbjct: 285 LFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPD---------CVTYCSLIDGLG 335

Query: 524 K 524
           K
Sbjct: 336 K 336



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 133/290 (45%), Gaps = 5/290 (1%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           +K    F  I+S    P +   Y++ +  L    Q +    + + M      LD   Y+ 
Sbjct: 411 EKGRMIFEDIRSYGFLP-DVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNA 469

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           ++    +     +A E  E M +  + P   TY AI+D  AK  +++E   L+E   + G
Sbjct: 470 VVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKG 529

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
            + + + +S L   FG+ G  D    +L+EM   G+ PN+  +N+LL+A+ KA +   A 
Sbjct: 530 IELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEAL 589

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
             F  M E    P+  T + LI    + +    A   W+ M++     + + Y T+++  
Sbjct: 590 VCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGL 649

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE 457
           A +G + +A  LFE  K ++   PD  S+ A++       N + A+E ++
Sbjct: 650 AKVGNITDAYSLFERFK-ANGGIPDAASFNALIE---GMSNANRAMEAYQ 695



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 122/263 (46%), Gaps = 1/263 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D  +YS +I    +     E    F  M + G   D   Y+A++D + KSGKV +   + 
Sbjct: 428 DVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEIL 487

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
           E       +P    +  +     +    D    + +E KS G++ N+V+Y++L++  GK 
Sbjct: 488 EEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKV 547

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G+   A  + +EM++ GLTP+  T  +L+    KA    +AL  ++ M+E K P +   Y
Sbjct: 548 GRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTY 607

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           + L+N    +    +A   ++DM+      P+  +YT M++     GN+ +A  LFE   
Sbjct: 608 SILINGLCRVQKYNKAFVFWQDMQKQGLV-PNVVTYTTMISGLAKVGNITDAYSLFERFK 666

Query: 461 ELGVAINVMGCTCLIQCLGKARR 483
             G   +      LI+ +  A R
Sbjct: 667 ANGGIPDAASFNALIEGMSNANR 689



 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 81/363 (22%), Positives = 158/363 (43%), Gaps = 38/363 (10%)

Query: 177 IKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTII------- 229
           +K   L P + + YNV +          +  +  +E+ +  ++ D+++Y+++I       
Sbjct: 106 VKGSCLEP-DIVLYNVCIDCFGKAGNVDMACKFFHELKAQGLKPDDVSYTSMIWVLCKAG 164

Query: 230 ------------------TCAKRCNL----------FDEAIEWFERMYKTGLMPDEVTYS 261
                              CA   N           F++A +  ER+ + G +P  V+++
Sbjct: 165 RLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFN 224

Query: 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
           +IL    K  KV+E LSL+E  +    +P+   ++++  M    G  +    +L EM+  
Sbjct: 225 SILTCLGKKRKVDEALSLFEV-MKKDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHA 283

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
            + PNL+  N +++ + KA K   A  +F+   + G  PD  T  +LI   GK     +A
Sbjct: 284 SLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEA 343

Query: 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
             L+E+M +     + ++Y +L+      G  E+  ++F+++ +   CKPD       ++
Sbjct: 344 YRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKVFKEL-IRRGCKPDLTLLNTYMD 402

Query: 442 IYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
                G V+    +FE++   G   +V   + LI  L KA +  +   +F     +G   
Sbjct: 403 CVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFAL 462

Query: 502 DDR 504
           D R
Sbjct: 463 DAR 465



 Score = 92.4 bits (228), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 69/296 (23%), Positives = 131/296 (44%), Gaps = 1/296 (0%)

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
            ++  E++    + D    +T + C  +    ++    FE +   G +PD  +YS ++  
Sbjct: 379 HKVFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHG 438

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
             K+G+  E  +++      G+  D  A++ +   F +SG       +L+EMK   VQP 
Sbjct: 439 LTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPT 498

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
           +  Y  +++ + K  +   A  LF+E    G+  +    ++LI  +GK     +A  + E
Sbjct: 499 VATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILE 558

Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
            M +     +   +N+LL+       + EA   F+ MK    C P+ Y+Y+ ++N     
Sbjct: 559 EMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMK-CPPNTYTYSILINGLCRV 617

Query: 447 GNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
              + A   +++M + G+  NV+  T +I  L K   I D   +F      G  PD
Sbjct: 618 QKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPD 673


>gi|255557937|ref|XP_002519997.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540761|gb|EEF42321.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1429

 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 158/323 (48%), Gaps = 13/323 (4%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           +L NE+  + +  D ITY+T+I+   R +  +EA++ F+ M      PD  TY+A++ VY
Sbjct: 268 ELLNEVRRSGLRPDIITYNTLISACSRESNLEEAVKVFDDMEAHYCQPDLWTYNAMISVY 327

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            + G   +   L++   + G+ PD + ++ L   F   G+ D ++ +  EM  +G   + 
Sbjct: 328 GRCGFSGKAEQLFKELESKGYFPDAVTYNSLLYAFAREGNVDKVKEICNEMVQMGFIRDE 387

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
           + YNT++   GK G+ GLA  L+ +M  SG TPD  T T LI   GKA    +A  +   
Sbjct: 388 MTYNTIIHMYGKQGQHGLALQLYRDMKLSGRTPDAITYTVLIDSLGKANKMVEAANVMSE 447

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           M           Y+ L+   A  G   EAE  F+ M+ S   +PD  +Y+ ML+++    
Sbjct: 448 MLNIGVKPTLRTYSALICGYARAGQRLEAEETFDCMRRSG-IRPDQLAYSVMLDVFLRFD 506

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCG 507
               A+ L+ EM   G+  +      +++ LG+  +++D+ R+        ++  + +CG
Sbjct: 507 EATKAMMLYREMVRDGITPDPTVYGAMLRNLGRENKVEDIQRI--------IRDMEEVCG 558

Query: 508 ----CLLSVVSLCETSEDVGKVI 526
                + S++   E  ED   ++
Sbjct: 559 MNPQAIASILVKGECYEDAAGML 581



 Score =  115 bits (288), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 109/481 (22%), Positives = 206/481 (42%), Gaps = 19/481 (3%)

Query: 228  IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
            I+    R +   EA + ++ M   G  P    Y  ++ +  K  +V +V ++      +G
Sbjct: 846  ILDAFARVSNIAEAKKIYQGMKAAGYFPTMHLYRIMIGLLCKGKRVRDVEAMVTEMEEAG 905

Query: 288  WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
            ++PD   ++ + +++    D+     + Q +K  G+QP+   YNTL+    +  +P    
Sbjct: 906  FRPDLSIWNSMLRLYTGIDDFRKTVQIYQRIKEDGLQPDEDTYNTLIVMYCRDHRPEEGC 965

Query: 348  SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
            SL  EM   GL P   T  +LI  +GK +   DA EL+E +      +D   Y+ ++ + 
Sbjct: 966  SLMHEMRRIGLEPKLDTYKSLIAAFGKQQLVVDAEELFEELLSKGSKLDRSFYHIMMKIY 1025

Query: 408  ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
             + G   +AE+L   MK +   +P   +   ++  YGS G    A ++   + E+G++++
Sbjct: 1026 RNSGNHSKAEKLLSMMKDAG-VEPTIATMHLLMVSYGSSGQPQEAEKVLTNLKEMGLSLS 1084

Query: 468  VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVIT 527
             +  + +I    K +     ++        G++PD R+  C +   SL E + D   ++ 
Sbjct: 1085 TLPYSSVIDAYLKNKDYSVGIQKLVEMKKEGLEPDHRIWTCFIRAASLSEHTHDAILLLQ 1144

Query: 528  CLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNE 587
             LQ +   L +   LI + S       +    +++  E +A   F N L D+     L  
Sbjct: 1145 ALQDSGFDLPS--RLITERSDSLVLEVDHCLEMLETMEDNAAFNFVNALEDLLWAFELRA 1202

Query: 588  RAHELLYLGTLYGLY-PGLHNKTLDEWSLDVRSLSVGAAQTA-LEEWMWTLAKIVLREEV 645
             A  +  L     +Y   +      +W  D R LS GAA  A L+ +  +   +VL    
Sbjct: 1203 TASWVFRLAVKRSIYCHDVFRVAEQDWGADFRKLSGGAALDASLQGYPASPKSVVLI--- 1259

Query: 646  LPQLFLAETGTGTHKFSQ-GLATAFASHVNKLAAPFRQSEGKAGCFVATREDLVSWVQAR 704
                      TGT +++   L     + + ++ +PF     ++G  VA    L  W++  
Sbjct: 1260 ----------TGTAEYNMVSLDNTLKACLWEMGSPFLPCRTRSGLLVAKAHSLRMWLKDS 1309

Query: 705  P 705
            P
Sbjct: 1310 P 1310



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 144/290 (49%), Gaps = 2/290 (0%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
             N ++   L P + I YN  + +       +   ++ ++M ++  + D  TY+ +I+  
Sbjct: 269 LLNEVRRSGLRP-DIITYNTLISACSRESNLEEAVKVFDDMEAHYCQPDLWTYNAMISVY 327

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            RC    +A + F+ +   G  PD VTY+++L  +A+ G V++V  +    V  G+  D 
Sbjct: 328 GRCGFSGKAEQLFKELESKGYFPDAVTYNSLLYAFAREGNVDKVKEICNEMVQMGFIRDE 387

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           + ++ +  M+G+ G +     + ++MK  G  P+ + Y  L++++GKA K   A ++  E
Sbjct: 388 MTYNTIIHMYGKQGQHGLALQLYRDMKLSGRTPDAITYTVLIDSLGKANKMVEAANVMSE 447

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M+  G+ P  +T +ALI  Y +A    +A E ++ MR +    D + Y+ +L++      
Sbjct: 448 MLNIGVKPTLRTYSALICGYARAGQRLEAEETFDCMRRSGIRPDQLAYSVMLDVFLRFDE 507

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
             +A  L+ +M + D   PD   Y AML   G    V++   +  +M E+
Sbjct: 508 ATKAMMLYREM-VRDGITPDPTVYGAMLRNLGRENKVEDIQRIIRDMEEV 556



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 115/525 (21%), Positives = 232/525 (44%), Gaps = 67/525 (12%)

Query: 29  PTRRSHPIKINISCNSKSSE-NVAAESPN------PETKTLSLSEQLKPLSSTTLSPTKN 81
           P+ R   +K++ SC S  ++ ++A+ SP       PE+++ + S +L  L S  +     
Sbjct: 24  PSIRWPHLKLSDSCTSPHTQFHIASPSPTQFFDEMPESESDNKSPKLGALESVEVDDESQ 83

Query: 82  DRTPLLSKPKSTWVNPTKPRRSVLSLQRQKRSTYSYNPRVRDLK---LFARKLNDCDNTE 138
           +R   LS+ +   +N    +R+    +R K  T     R+  L+     A  L+D     
Sbjct: 84  ERLGRLSRTRVKKMNKLALKRAKDWRERVKFLT----DRILGLRPDQFVADVLDD----- 134

Query: 139 EAFLRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLR 198
                  +++   PT    ++     + WQ++   F W+  ++       +Y+   + L 
Sbjct: 135 -------SKVQMTPTDFCFVVKWVGQENWQRALEVFEWLNLRH-------WYSPNARML- 179

Query: 199 FGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEV 258
                                      +TI+    + N    A+E F R   T     +V
Sbjct: 180 ---------------------------ATILAVLGKANQEALAVEIFIRAESTVDNTVQV 212

Query: 259 TYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY--DGIRYVLQ 316
            Y+A++ VYA++G+  +V  + +     G +PD ++F+ L     ++G    +    +L 
Sbjct: 213 -YNAMMGVYARTGRFNKVQGMLDLMRERGCEPDLVSFNTLINARLKAGAMTPNVAIELLN 271

Query: 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
           E++  G++P+++ YNTL+ A  +      A  +FD+M      PD  T  A+I +YG+  
Sbjct: 272 EVRRSGLRPDIITYNTLISACSRESNLEEAVKVFDDMEAHYCQPDLWTYNAMISVYGRCG 331

Query: 377 WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY 436
           ++  A +L++ +    +  D + YN+LL   A  G V++ + +  +M    + + D  +Y
Sbjct: 332 FSGKAEQLFKELESKGYFPDAVTYNSLLYAFAREGNVDKVKEICNEMVQMGFIR-DEMTY 390

Query: 437 TAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496
             ++++YG  G    A++L+ +M   G   + +  T LI  LGKA ++ +   V    ++
Sbjct: 391 NTIIHMYGKQGQHGLALQLYRDMKLSGRTPDAITYTVLIDSLGKANKMVEAANVMSEMLN 450

Query: 497 RGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAF 539
            GVKP  R    L+   +      +  +   C++++   P  +A+
Sbjct: 451 IGVKPTLRTYSALICGYARAGQRLEAEETFDCMRRSGIRPDQLAY 495



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 92/451 (20%), Positives = 192/451 (42%), Gaps = 22/451 (4%)

Query: 225  YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
            Y ++I C +      EA + F  M   G+ P +  Y +++ +Y K G  E    L +   
Sbjct: 667  YESLIQCCEENEFTAEASQIFSDMRFNGVKPSKSLYRSMVLMYCKMGFPETAHYLIDLAE 726

Query: 285  ASGWKPDPIAFSV-LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
              G   D I+  V + + +G+   +     ++  ++      +  V+N L++A   +G  
Sbjct: 727  IEGMPFDKISIDVAVIETYGKLKLWQKAESLVGNLRQRCTNVDRKVWNALIQAYAASGCY 786

Query: 344  GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT- 402
              AR++F+ M+  G +P   ++  L+    +A      LE    + +    M F +  + 
Sbjct: 787  EQARAVFNTMMRDGPSPTVDSINGLL----QALIVDGRLEELYVVTQEIQDMGFQISKSS 842

Query: 403  ---LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
               +L+  A +  + EA+++++ MK + Y  P  + Y  M+ +   G  V +   +  EM
Sbjct: 843  ILLILDAFARVSNIAEAKKIYQGMKAAGYF-PTMHLYRIMIGLLCKGKRVRDVEAMVTEM 901

Query: 460  SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETS 519
             E G   ++     +++           V+++    + G++PD+     L+ +       
Sbjct: 902  EEAGFRPDLSIWNSMLRLYTGIDDFRKTVQIYQRIKEDGLQPDEDTYNTLIVMYCRDHRP 961

Query: 520  EDVGKVITCLQQAN--PKLVAFLNLIE--DNSTGFENIKEEFRNVI-KDTEVDARRPFCN 574
            E+   ++  +++    PKL  + +LI          + +E F  ++ K +++D  R F +
Sbjct: 962  EEGCSLMHEMRRIGLEPKLDTYKSLIAAFGKQQLVVDAEELFEELLSKGSKLD--RSFYH 1019

Query: 575  CLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALEEWMW 634
             ++ I RN   + +A +LL +    G+ P +    L    L V   S G  Q A E+ + 
Sbjct: 1020 IMMKIYRNSGNHSKAEKLLSMMKDAGVEPTIATMHL----LMVSYGSSGQPQEA-EKVLT 1074

Query: 635  TLAKIVLREEVLPQLFLAETGTGTHKFSQGL 665
             L ++ L    LP   + +       +S G+
Sbjct: 1075 NLKEMGLSLSTLPYSSVIDAYLKNKDYSVGI 1105


>gi|410110071|gb|AFV61115.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
           macrostachya]
          Length = 437

 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 90/300 (30%), Positives = 152/300 (50%), Gaps = 1/300 (0%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
           +EM    +  D  TYST+IT   +  LFD A+ W ++M +  +  D V YS ++++  K 
Sbjct: 1   DEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKL 60

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
               + +S++ R   SG+ PD +A++ +  +FG++  +   R ++ EM++ GV PN   Y
Sbjct: 61  CDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASY 120

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
           +TLL    +  K   A S+F EM E     D  T   +I +YG+   AK+A +L+  MR+
Sbjct: 121 STLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK 180

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
                + + YNTLL +  D  L  EA  LF  M+  +  + +  +Y +M+ IYG     +
Sbjct: 181 MGIEPNVVSYNTLLRVYGDAELFGEAIHLFXLMQRKNIVQ-NVVTYNSMMMIYGKTLEHE 239

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
            A  L +EM   G+  N +  + +I   GK  ++D    +F      GV+ D  L   ++
Sbjct: 240 KANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMI 299



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/345 (23%), Positives = 162/345 (46%), Gaps = 6/345 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K     P + + YN  +      + F+    L +EM +  +  +  +YS
Sbjct: 63  YSKAISIFSRLKRSGFTP-DLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYS 121

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY + G  +E   L+      
Sbjct: 122 TLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 181

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++   M+   +  N+V YN+++   GK  +   A
Sbjct: 182 GIEPNVVSYNTLLRVYGDAELFGEAIHLFXLMQRKNIVQNVVTYNSMMMIYGKTLEHEKA 241

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R +   +D +LY T++  
Sbjct: 242 NNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVA 301

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K      PDN      ++I    G ++ A  +F +  + G   
Sbjct: 302 YERAGLVAHAKRLLHELK-----SPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVK 356

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
           ++M    +I    K ++  ++V VF      G  PD  +   +L+
Sbjct: 357 DIMVFERMIHLFSKYKKYANVVEVFDKMRGLGYFPDSNVIALVLN 401



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 127/267 (47%), Gaps = 1/267 (0%)

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           + M +  L PD  TYS ++  + K G  +  LS  ++        D + +S L ++  + 
Sbjct: 1   DEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKL 60

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
            DY     +   +K  G  P+LV YN ++   GKA     ARSL  EM  +G+ P+  + 
Sbjct: 61  CDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASY 120

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
           + L+ +Y + +   +AL ++  MRE K  +D    N ++++   +G+ +EA++LF  M+ 
Sbjct: 121 STLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK 180

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
               +P+  SY  +L +YG       AI LF  M    +  NV+    ++   GK    +
Sbjct: 181 MG-IEPNVVSYNTLLRVYGDAELFGEAIHLFXLMQRKNIVQNVVTYNSMMMIYGKTLEHE 239

Query: 486 DLVRVFGVSIDRGVKPDDRLCGCLLSV 512
               +     +RG++P+      ++S+
Sbjct: 240 KANNLIQEMQNRGIEPNSITYSTIISI 266



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 122/246 (49%), Gaps = 5/246 (2%)

Query: 218 IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL 277
           IE + ++Y+T++       LF EAI  F  M +  ++ + VTY++++ +Y K+ + E+  
Sbjct: 183 IEPNVVSYNTLLRVYGDAELFGEAIHLFXLMQRKNIVQNVVTYNSMMMIYGKTLEHEKAN 242

Query: 278 SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
           +L +     G +P+ I +S +  ++G+ G  D    + Q+++S GV+ + V+Y T++ A 
Sbjct: 243 NLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAY 302

Query: 338 GKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDF 397
            +AG    A+ L  E+     +PD       I I   A   ++A  ++ +  +     D 
Sbjct: 303 ERAGLVAHAKRLLHELK----SPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDI 358

Query: 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE 457
           +++  ++++ +          +F+ M+   Y  PD+     +LN YG     D A  ++ 
Sbjct: 359 MVFERMIHLFSKYKKYANVVEVFDKMRGLGYF-PDSNVIALVLNAYGKLHEFDKANGVYM 417

Query: 458 EMSELG 463
           EM E+G
Sbjct: 418 EMQEVG 423



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 96/217 (44%), Gaps = 1/217 (0%)

Query: 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
           EM+   + P+   Y+TL+   GK G    A S   +M +  +  D    + LI++  K  
Sbjct: 2   EMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLC 61

Query: 377 WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY 436
               A+ ++ R++ + +  D + YN ++N+     L  EA  L  +M+ +    P+  SY
Sbjct: 62  DYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAG-VMPNTASY 120

Query: 437 TAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496
           + +L +Y        A+ +F EM E+   +++  C  +I   G+     +  ++F     
Sbjct: 121 STLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK 180

Query: 497 RGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN 533
            G++P+      LL V    E   +   +   +Q+ N
Sbjct: 181 MGIEPNVVSYNTLLRVYGDAELFGEAIHLFXLMQRKN 217



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/244 (21%), Positives = 106/244 (43%), Gaps = 9/244 (3%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGR--QFQLI 206
           P+  +    L +    + + ++   F  ++ +N+     + YN  M  + +G+  + +  
Sbjct: 185 PNVVSYNTLLRVYGDAELFGEAIHLFXLMQRKNIVQ-NVVTYNSMM--MIYGKTLEHEKA 241

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
             L  EM +  IE ++ITYSTII+   +    D A   F+++  +G+  D+V Y  ++  
Sbjct: 242 NNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVA 301

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
           Y ++G V       +R +     PD I       +   +G  +   YV ++    G   +
Sbjct: 302 YERAGLVAHA----KRLLHELKSPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKD 357

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
           ++V+  ++    K  K      +FD+M   G  PD   +  ++  YGK      A  ++ 
Sbjct: 358 IMVFERMIHLFSKYKKYANVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANGVYM 417

Query: 387 RMRE 390
            M+E
Sbjct: 418 EMQE 421


>gi|222636757|gb|EEE66889.1| hypothetical protein OsJ_23712 [Oryza sativa Japonica Group]
          Length = 579

 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 84/341 (24%), Positives = 169/341 (49%), Gaps = 4/341 (1%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN+ +  L  G + +   ++ +EM    +  + +T + ++    +    +EA + FE   
Sbjct: 125 YNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESAS 184

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
           + G  PD VTY +++D   K G+V+E   L+E+ + +G   +P+ ++ L + F   G  +
Sbjct: 185 QRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKE 244

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               + +E+   G +P+L + NT ++ + KAG+    R +F+++   G  PD ++ + LI
Sbjct: 245 DGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILI 304

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
               KA  A++   ++  M++  + +D   YN +++     G V +A  + E+MK     
Sbjct: 305 HGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMK-EKCV 363

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
           +P   +Y A+++       +D A  LFEE    G+ +NV+  + LI   GK  RID+   
Sbjct: 364 QPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYL 423

Query: 490 VFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQ 530
           +    + +G+ P+      LL  +     +E++ + + C Q
Sbjct: 424 ILEEMMKKGLTPNVYTWNSLLDALV---KAEEINEALVCFQ 461



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 131/262 (50%), Gaps = 2/262 (0%)

Query: 241 AIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGK 300
           A ++F  +   GL PD+V+Y++++ V  K+G++ E   L+ +  A    P   A++ +  
Sbjct: 2   AWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIM 61

Query: 301 MFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTP 360
            +G +G ++    +L+ ++  G  P++V +N++L  +GK  K   A SLF E+++    P
Sbjct: 62  GYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLF-EVMKKDAEP 120

Query: 361 DEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLF 420
           +  T   +I +       ++A  + + M       + +  N +++       +EEA ++F
Sbjct: 121 NSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIF 180

Query: 421 EDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK 480
           E       C PD  +Y ++++  G  G VD A  LFE+M + G   N +  T LI+    
Sbjct: 181 ESASQRG-CNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFI 239

Query: 481 ARRIDDLVRVFGVSIDRGVKPD 502
             R +D  ++F   I RG KPD
Sbjct: 240 HGRKEDGHKIFKELIRRGCKPD 261



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 122/263 (46%), Gaps = 1/263 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D  +YS +I    +     E    F  M + G   D   Y+A++D + KSGKV +   + 
Sbjct: 296 DVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEIL 355

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
           E       +P    +  +     +    D    + +E KS G++ N+V+Y++L++  GK 
Sbjct: 356 EEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKV 415

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G+   A  + +EM++ GLTP+  T  +L+    KA    +AL  ++ M+E K P +   Y
Sbjct: 416 GRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTY 475

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           + L+N    +    +A   ++DM+      P+  +YT M++     GN+ +A  LFE   
Sbjct: 476 SILINGLCRVQKYNKAFVFWQDMQKQGLV-PNVVTYTTMISGLAKVGNITDAYSLFERFK 534

Query: 461 ELGVAINVMGCTCLIQCLGKARR 483
             G   +      LI+ +  A R
Sbjct: 535 ANGGIPDAASFNALIEGMSNANR 557



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 133/290 (45%), Gaps = 5/290 (1%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           +K    F  I+S    P +   Y++ +  L    Q +    + + M      LD   Y+ 
Sbjct: 279 EKGRMIFEDIRSYGFLP-DVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNA 337

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           ++    +     +A E  E M +  + P   TY AI+D  AK  +++E   L+E   + G
Sbjct: 338 VVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKG 397

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
            + + + +S L   FG+ G  D    +L+EM   G+ PN+  +N+LL+A+ KA +   A 
Sbjct: 398 IELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEAL 457

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
             F  M E    P+  T + LI    + +    A   W+ M++     + + Y T+++  
Sbjct: 458 VCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGL 517

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE 457
           A +G + +A  LFE  K ++   PD  S+ A++       N + A+E ++
Sbjct: 518 AKVGNITDAYSLFERFK-ANGGIPDAASFNALIE---GMSNANRAMEAYQ 563



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 69/296 (23%), Positives = 131/296 (44%), Gaps = 1/296 (0%)

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
            ++  E++    + D    +T + C  +    ++    FE +   G +PD  +YS ++  
Sbjct: 247 HKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHG 306

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
             K+G+  E  +++      G+  D  A++ +   F +SG       +L+EMK   VQP 
Sbjct: 307 LTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPT 366

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
           +  Y  +++ + K  +   A  LF+E    G+  +    ++LI  +GK     +A  + E
Sbjct: 367 VATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILE 426

Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
            M +     +   +N+LL+       + EA   F+ MK    C P+ Y+Y+ ++N     
Sbjct: 427 EMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMK-CPPNTYTYSILINGLCRV 485

Query: 447 GNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
              + A   +++M + G+  NV+  T +I  L K   I D   +F      G  PD
Sbjct: 486 QKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPD 541



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/328 (21%), Positives = 148/328 (45%), Gaps = 2/328 (0%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
           +E+ +  ++ D+++Y+++I    +     EA E F +M     +P    Y+ ++  Y  +
Sbjct: 7   HELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSA 66

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
           G+ E+   L ER    G  P  ++F+ +    G+    D    + + MK    +PN   Y
Sbjct: 67  GRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKK-DAEPNSSTY 125

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
           N +++ +   G+   A  + DEM  + L P+  T+  ++    KAR  ++A +++E   +
Sbjct: 126 NIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQ 185

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
                D + Y +L++     G V+EA RLFE M L      +   YT+++  +   G  +
Sbjct: 186 RGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKM-LDAGHNANPVVYTSLIRNFFIHGRKE 244

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
           +  ++F+E+   G   ++      + C+ KA  ++    +F      G  PD R    L+
Sbjct: 245 DGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILI 304

Query: 511 SVVSLCETSEDVGKVITCLQQANPKLVA 538
             ++    + +   +   ++Q    L A
Sbjct: 305 HGLTKAGQARETSNIFHAMKQQGFALDA 332



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 92/215 (42%), Gaps = 46/215 (21%)

Query: 345 LARSLFDEMVESGLTPDEKTLTALIKI--------------------------------- 371
           +A   F E+   GL PD+ + T++I +                                 
Sbjct: 1   MAWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMI 60

Query: 372 --YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
             YG A   +DA +L ER+RE       + +N++L        V+EA  LFE MK     
Sbjct: 61  MGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKD--A 118

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
           +P++ +Y  ++++   GG V+ A  + +EM    +  N++    ++  L KAR++++  +
Sbjct: 119 EPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYK 178

Query: 490 VFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGK 524
           +F  +  RG  PD          V+ C   + +GK
Sbjct: 179 IFESASQRGCNPD---------CVTYCSLIDGLGK 204


>gi|302775073|ref|XP_002970953.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
 gi|300161664|gb|EFJ28279.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
          Length = 577

 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 101/370 (27%), Positives = 169/370 (45%), Gaps = 6/370 (1%)

Query: 138 EEA--FLRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNL--FPMETIFYNVT 193
           EEA   LR I +    P       +++ L   ++S+  +   K   L    ++T+ Y   
Sbjct: 38  EEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTAL 97

Query: 194 MKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGL 253
           ++ L    +      +   M S+    D +T ST+I    +      A+  F+ M   GL
Sbjct: 98  IRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGL 157

Query: 254 MPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRY 313
            P+EV YSA++    K+ K++  L +  +   +   PD I ++VL     +SGD +  R 
Sbjct: 158 APNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARA 217

Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA-RSLFDEMVESGLTPDEKTLTALIKIY 372
              EM   G +P++  YN L+    KAG    A  SL  E   +G T D  T TA++   
Sbjct: 218 FFDEMLEAGCKPDVYTYNILISGFCKAGNTDAASHSLAQETTINGCTIDIHTYTAIVDWL 277

Query: 373 GKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPD 432
            K +  ++A+ L E++  N        YN LLN    +G +EEA  L   + + + C PD
Sbjct: 278 AKNKKIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKI-VDNGCTPD 336

Query: 433 NYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFG 492
             +YT++++  G       A +LF+EM+  G+A++ +  T LI+ L +  +I     V+ 
Sbjct: 337 VVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYK 396

Query: 493 VSIDRGVKPD 502
                G  PD
Sbjct: 397 TMTSHGCVPD 406



 Score =  129 bits (323), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 82/275 (29%), Positives = 136/275 (49%), Gaps = 1/275 (0%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           TY+ ++    +    +EAI+   ++   G  PD VTY++++D   K  +  E   L++  
Sbjct: 304 TYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEM 363

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
              G   D + ++ L +   ++G       V + M S G  P++V  +T+++ + KAG+ 
Sbjct: 364 ALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRI 423

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
           G A  +F  M   GL P+E   +ALI    KAR    ALE+  +M++     D I YN L
Sbjct: 424 GAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNIL 483

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           ++     G VE A   F++M L   CKPD Y+Y  +++ +   GN D A  +F++MS   
Sbjct: 484 IDGLCKSGDVEAARAFFDEM-LEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSR 542

Query: 464 VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRG 498
            + NV+    LI  L K R++      F    +RG
Sbjct: 543 CSANVVTYGALISGLCKRRQLTKASLYFQHMKERG 577



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/279 (28%), Positives = 137/279 (49%), Gaps = 2/279 (0%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           TY+ ++    +    +EAI+   ++   G  PD VTY++++D   K  +  E   L++  
Sbjct: 23  TYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEM 82

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
              G   D + ++ L +   ++G       V + M S G  P++V  +T+++ + KAG+ 
Sbjct: 83  ALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRI 142

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
           G A  +F  M   GL P+E   +ALI    KAR    ALE+  +M++     D I YN L
Sbjct: 143 GAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNVL 202

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIE-LFEEMSEL 462
           ++     G VE A   F++M L   CKPD Y+Y  +++ +   GN D A   L +E +  
Sbjct: 203 IDGLCKSGDVEAARAFFDEM-LEAGCKPDVYTYNILISGFCKAGNTDAASHSLAQETTIN 261

Query: 463 GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
           G  I++   T ++  L K ++I++ V +       G  P
Sbjct: 262 GCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTP 300



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 92/350 (26%), Positives = 156/350 (44%), Gaps = 39/350 (11%)

Query: 190 YNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERM 248
           YN  +  L + GR  + I+ L  ++V N    D +TY+++I    +     EA + F+ M
Sbjct: 24  YNALLNGLCKMGRLEEAIDLL-RKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEM 82

Query: 249 YKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY 308
              GL  D V Y+A++    ++GK+ +  S+Y+   + G  PD +  S +     ++G  
Sbjct: 83  ALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRI 142

Query: 309 DGIRYVLQEMKSLGVQPNLVV-----------------------------------YNTL 333
                + + M++ G+ PN VV                                   YN L
Sbjct: 143 GAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNVL 202

Query: 334 LEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALE-LWERMRENK 392
           ++ + K+G    AR+ FDEM+E+G  PD  T   LI  + KA     A   L +    N 
Sbjct: 203 IDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAASHSLAQETTING 262

Query: 393 WPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNA 452
             +D   Y  +++  A    +EEA  L E +  ++ C P   +Y A+LN     G ++ A
Sbjct: 263 CTIDIHTYTAIVDWLAKNKKIEEAVALMEKIT-ANGCTPTIATYNALLNGLCKMGRLEEA 321

Query: 453 IELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           I+L  ++ + G   +V+  T LI  LGK +R  +  ++F     RG+  D
Sbjct: 322 IDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALD 371



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 132/301 (43%), Gaps = 37/301 (12%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           +TI YNV +  L      +      +EM+    + D  TY+ +I+   +    D A    
Sbjct: 195 DTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAASHSL 254

Query: 246 -ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
            +     G   D  TY+AI+D  AK+ K+EE ++L E+  A+G                 
Sbjct: 255 AQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGC---------------- 298

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
                               P +  YN LL  + K G+   A  L  ++V++G TPD  T
Sbjct: 299 -------------------TPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVT 339

Query: 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
            T+LI   GK + + +A +L++ M      +D + Y  L+      G + +A  +++ M 
Sbjct: 340 YTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMT 399

Query: 425 LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484
            S  C PD  + + M++     G +  A+ +F+ M   G+A N +  + LI  L KAR++
Sbjct: 400 -SHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKM 458

Query: 485 D 485
           D
Sbjct: 459 D 459



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 125/301 (41%), Gaps = 5/301 (1%)

Query: 94  WVNPTKPRRSVLSLQRQKRSTYSYNPRVRDLKLFARKLNDCDNTEEA--FLRAITEIPHQ 151
           W+   K     ++L  +K +     P +         L      EEA   LR I +    
Sbjct: 276 WLAKNKKIEEAVALM-EKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCT 334

Query: 152 PTRENALLILNSLKFWQKSYFFFNWIKSQNL--FPMETIFYNVTMKSLRFGRQFQLIEQL 209
           P       +++ L   ++S+  +   K   L    ++T+ Y   ++ L    +      +
Sbjct: 335 PDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSV 394

Query: 210 ANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAK 269
              M S+    D +T ST+I    +      A+  F+ M   GL P+EV YSA++    K
Sbjct: 395 YKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCK 454

Query: 270 SGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVV 329
           + K++  L +  +   +   PD I +++L     +SGD +  R    EM   G +P++  
Sbjct: 455 ARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYT 514

Query: 330 YNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMR 389
           YN L+    KAG    A  +FD+M  S  + +  T  ALI    K R    A   ++ M+
Sbjct: 515 YNILISGFCKAGNTDAACGVFDDMSSSRCSANVVTYGALISGLCKRRQLTKASLYFQHMK 574

Query: 390 E 390
           E
Sbjct: 575 E 575



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 95/214 (44%), Gaps = 36/214 (16%)

Query: 272 KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYN 331
           K+EE ++L E+  A+G                                     P +  YN
Sbjct: 1   KIEEAVALMEKITANGC-----------------------------------TPTIATYN 25

Query: 332 TLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN 391
            LL  + K G+   A  L  ++V++G TPD  T T+LI   GK + + +A +L++ M   
Sbjct: 26  ALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALR 85

Query: 392 KWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDN 451
              +D + Y  L+      G + +A  +++ M  S  C PD  + + M++     G +  
Sbjct: 86  GLALDTVCYTALIRELLQTGKIPQASSVYKTMT-SHGCVPDVVTLSTMIDGLSKAGRIGA 144

Query: 452 AIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
           A+ +F+ M   G+A N +  + LI  L KAR++D
Sbjct: 145 AVRIFKSMEARGLAPNEVVYSALIHGLCKARKMD 178


>gi|15236546|ref|NP_194913.1| proton gradient regulation 3 [Arabidopsis thaliana]
 gi|75213543|sp|Q9SZ52.1|PP344_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g31850, chloroplastic; AltName: Full=Protein PROTON
           GRADIENT REGULATION 3; Flags: Precursor
 gi|4584524|emb|CAB40755.1| putative protein [Arabidopsis thaliana]
 gi|7270088|emb|CAB79903.1| putative protein [Arabidopsis thaliana]
 gi|332660567|gb|AEE85967.1| proton gradient regulation 3 [Arabidopsis thaliana]
          Length = 1112

 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 109/428 (25%), Positives = 192/428 (44%), Gaps = 16/428 (3%)

Query: 85  PLLSKPKSTWVNPTKPRR--SVLSLQRQKRSTYSYNPRVRDLKLFARKLNDCDNTEEAF- 141
           P L    S  V   K R   SV+ L ++   T    P V    +  R L       EA+ 
Sbjct: 221 PSLQTYSSLMVGLGKRRDIDSVMGLLKEME-TLGLKPNVYTFTICIRVLGRAGKINEAYE 279

Query: 142 -LRAITEIPHQPTRENALLILNSLKFWQK---SYFFFNWIKSQNLFPMETIFYNVTMKSL 197
            L+ + +    P      +++++L   +K   +   F  +K+    P + + Y   +   
Sbjct: 280 ILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKP-DRVTYITLLDRF 338

Query: 198 RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDE 257
              R    ++Q  +EM  +    D +T++ ++    +   F EA +  + M   G++P+ 
Sbjct: 339 SDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNL 398

Query: 258 VTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQE 317
            TY+ ++    +  ++++ L L+    + G KP    + V    +G+SGD        ++
Sbjct: 399 HTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEK 458

Query: 318 MKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARW 377
           MK+ G+ PN+V  N  L ++ KAG+   A+ +F  + + GL PD  T   ++K Y K   
Sbjct: 459 MKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGE 518

Query: 378 AKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLF---EDMKLSDYCKPDNY 434
             +A++L   M EN    D I+ N+L+N       V+EA ++F   ++MKL    KP   
Sbjct: 519 IDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKL----KPTVV 574

Query: 435 SYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVS 494
           +Y  +L   G  G +  AIELFE M + G   N +    L  CL K   +   +++    
Sbjct: 575 TYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKM 634

Query: 495 IDRGVKPD 502
           +D G  PD
Sbjct: 635 MDMGCVPD 642



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 161/353 (45%), Gaps = 1/353 (0%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           P   + E     L S      S+ +F  +         T   N  +++LR   + + +  
Sbjct: 80  PDLSSSEEVTRGLKSFPDTDSSFSYFKSVAGNLNLVHTTETCNYMLEALRVDGKLEEMAY 139

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           + + M    I+ D  TY TI           +A     +M + G + +  +Y+ ++ +  
Sbjct: 140 VFDLMQKRIIKRDTNTYLTIFKSLSVKGGLKQAPYALRKMREFGFVLNAYSYNGLIHLLL 199

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           KS    E + +Y R +  G++P    +S L    G+  D D +  +L+EM++LG++PN+ 
Sbjct: 200 KSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVY 259

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            +   +  +G+AGK   A  +   M + G  PD  T T LI     AR    A E++E+M
Sbjct: 260 TFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKM 319

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
           +  +   D + Y TLL+  +D   ++  ++ + +M+  D   PD  ++T +++     GN
Sbjct: 320 KTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEME-KDGHVPDVVTFTILVDALCKAGN 378

Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
              A +  + M + G+  N+     LI  L +  R+DD + +FG     GVKP
Sbjct: 379 FGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKP 431



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 139/315 (44%), Gaps = 36/315 (11%)

Query: 224  TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
            TY+ +I      ++ + A + F ++  TG +PD  TY+ +LD Y KSGK++E+  LY+  
Sbjct: 787  TYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEM 846

Query: 284  --------------VASG----------------------WKPDPIAFSVLGKMFGESGD 307
                          V SG                      + P    +  L     +SG 
Sbjct: 847  STHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGR 906

Query: 308  YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
                + + + M   G +PN  +YN L+   GKAG+   A +LF  MV+ G+ PD KT + 
Sbjct: 907  LYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSV 966

Query: 368  LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
            L+          + L  ++ ++E+    D + YN ++N       +EEA  LF +MK S 
Sbjct: 967  LVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSR 1026

Query: 428  YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
               PD Y+Y +++   G  G V+ A +++ E+   G+  NV     LI+    + + +  
Sbjct: 1027 GITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHA 1086

Query: 488  VRVFGVSIDRGVKPD 502
              V+   +  G  P+
Sbjct: 1087 YAVYQTMVTGGFSPN 1101



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 88/338 (26%), Positives = 146/338 (43%), Gaps = 39/338 (11%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
           TI  +   K+  FG  F  ++ + ++ +   +     TY+T+I    R +  D+A+E F 
Sbjct: 367 TILVDALCKAGNFGEAFDTLDVMRDQGILPNLH----TYNTLICGLLRVHRLDDALELFG 422

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
            M   G+ P   TY   +D Y KSG     L  +E+    G  P+ +A +       ++G
Sbjct: 423 NMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAG 482

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
                + +   +K +G+ P+ V YN +++   K G+   A  L  EM+E+G  PD   + 
Sbjct: 483 RDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVN 542

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM--- 423
           +LI    KA    +A +++ RM+E K     + YNTLL      G ++EA  LFE M   
Sbjct: 543 SLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQK 602

Query: 424 ------------------------------KLSDY-CKPDNYSYTAMLNIYGSGGNVDNA 452
                                         K+ D  C PD ++Y  ++      G V  A
Sbjct: 603 GCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEA 662

Query: 453 IELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRV 490
           +  F +M +L     V  CT L+  + KA  I+D  ++
Sbjct: 663 MCFFHQMKKLVYPDFVTLCT-LLPGVVKASLIEDAYKI 699



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 154/325 (47%), Gaps = 6/325 (1%)

Query: 228  IITCAKRCNLFDEAIEWFERMYKT-GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
            II  + + N    A   FE+  K  G+ P   TY+ ++    ++  +E    ++ +  ++
Sbjct: 755  IIRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKST 814

Query: 287  GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
            G  PD   ++ L   +G+SG  D +  + +EM +   + N + +N ++  + KAG    A
Sbjct: 815  GCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDA 874

Query: 347  RSLF-DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405
              L+ D M +   +P   T   LI    K+    +A +L+E M +     +  +YN L+N
Sbjct: 875  LDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILIN 934

Query: 406  MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
                 G  + A  LF+ M + +  +PD  +Y+ +++     G VD  +  F+E+ E G+ 
Sbjct: 935  GFGKAGEADAACALFKRM-VKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLN 993

Query: 466  INVMGCTCLIQCLGKARRIDDLVRVFG-VSIDRGVKPDDRLCGCLLSVVSLCETSEDVGK 524
             +V+    +I  LGK+ R+++ + +F  +   RG+ PD      L+  + +    E+ GK
Sbjct: 994  PDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGK 1053

Query: 525  VITCLQQAN--PKLVAFLNLIEDNS 547
            +   +Q+A   P +  F  LI   S
Sbjct: 1054 IYNEIQRAGLEPNVFTFNALIRGYS 1078



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 116/244 (47%), Gaps = 1/244 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D++TY+ ++ C  +    DEAI+    M + G  PD +  +++++   K+ +V+E   ++
Sbjct: 502 DSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMF 561

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
            R      KP  + ++ L    G++G       + + M   G  PN + +NTL + + K 
Sbjct: 562 MRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKN 621

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
            +  LA  +  +M++ G  PD  T   +I    K    K+A+  + +M++  +P DF+  
Sbjct: 622 DEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKLVYP-DFVTL 680

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
            TLL       L+E+A ++  +   +   +P N  +  ++    +   +DNA+   E + 
Sbjct: 681 CTLLPGVVKASLIEDAYKIITNFLYNCADQPANLFWEDLIGSILAEAGIDNAVSFSERLV 740

Query: 461 ELGV 464
             G+
Sbjct: 741 ANGI 744



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 97/400 (24%), Positives = 169/400 (42%), Gaps = 42/400 (10%)

Query: 184  PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
            P  TI +N     L    +  L  ++  +M+      D  TY+TII    +     EA+ 
Sbjct: 605  PPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMC 664

Query: 244  WFERMYK---------TGLMPDEVTYSAILDVY--------------------------- 267
            +F +M K           L+P  V  S I D Y                           
Sbjct: 665  FFHQMKKLVYPDFVTLCTLLPGVVKASLIEDAYKIITNFLYNCADQPANLFWEDLIGSIL 724

Query: 268  AKSGKVEEVLSLYERGVASGWKPDPIAFSV-LGKMFGESGDYDGIRYVLQEM-KSLGVQP 325
            A++G ++  +S  ER VA+G   D  +  V + +   +  +  G R + ++  K LGVQP
Sbjct: 725  AEAG-IDNAVSFSERLVANGICRDGDSILVPIIRYSCKHNNVSGARTLFEKFTKDLGVQP 783

Query: 326  NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
             L  YN L+  + +A    +A+ +F ++  +G  PD  T   L+  YGK+    +  EL+
Sbjct: 784  KLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELY 843

Query: 386  ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445
            + M  ++   + I +N +++     G V++A  L+ D+       P   +Y  +++    
Sbjct: 844  KEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSK 903

Query: 446  GGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRL 505
             G +  A +LFE M + G   N      LI   GKA   D    +F   +  GV+PD + 
Sbjct: 904  SGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKT 963

Query: 506  CGCLLSVVSLCETSEDVGKVITCLQQA--NPKLVAFLNLI 543
               L+  + +    ++       L+++  NP +V + NLI
Sbjct: 964  YSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCY-NLI 1002



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 86/180 (47%), Gaps = 1/180 (0%)

Query: 190  YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
            YN+ +       +      L   MV   +  D  TYS ++ C       DE + +F+ + 
Sbjct: 929  YNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELK 988

Query: 250  KTGLMPDEVTYSAILDVYAKSGKVEEVLSLY-ERGVASGWKPDPIAFSVLGKMFGESGDY 308
            ++GL PD V Y+ I++   KS ++EE L L+ E   + G  PD   ++ L    G +G  
Sbjct: 989  ESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMV 1048

Query: 309  DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
            +    +  E++  G++PN+  +N L+     +GKP  A +++  MV  G +P+  T   L
Sbjct: 1049 EEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQL 1108



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 69/296 (23%), Positives = 128/296 (43%), Gaps = 10/296 (3%)

Query: 319 KSLGVQPNLV----VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK 374
           KS+    NLV      N +LEA+   GK      +FD M +  +  D  T   + K    
Sbjct: 106 KSVAGNLNLVHTTETCNYMLEALRVDGKLEEMAYVFDLMQKRIIKRDTNTYLTIFKSLSV 165

Query: 375 ARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNY 434
               K A     +MRE  + ++   YN L+++        EA  ++  M L  + +P   
Sbjct: 166 KGGLKQAPYALRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGF-RPSLQ 224

Query: 435 SYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVS 494
           +Y++++   G   ++D+ + L +EM  LG+  NV   T  I+ LG+A +I++   +    
Sbjct: 225 TYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRM 284

Query: 495 IDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQA--NPKLVAFLNLIE--DNSTGF 550
            D G  PD      L+  +      +   +V   ++     P  V ++ L++   ++   
Sbjct: 285 DDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDL 344

Query: 551 ENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLH 606
           +++K+ +  + KD  V     F   +  +C+  N  E A + L +    G+ P LH
Sbjct: 345 DSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGE-AFDTLDVMRDQGILPNLH 399


>gi|410110069|gb|AFV61114.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
           lycioides]
          Length = 429

 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 90/299 (30%), Positives = 151/299 (50%), Gaps = 1/299 (0%)

Query: 212 EMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG 271
           EM    +  D  TYST+IT   +  LFD A+ W ++M +  +  D V YS ++++  K  
Sbjct: 1   EMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLC 60

Query: 272 KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYN 331
              + +S++ R   SG+ PD +A++ +  +FG++  +   R ++ EM++ GV PN   Y+
Sbjct: 61  DYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYS 120

Query: 332 TLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN 391
           TLL    +  K   A S+F EM E     D  T   +I +YG+   AK+A +L+  MR+ 
Sbjct: 121 TLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 180

Query: 392 KWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDN 451
               + + YNTLL +  D  L  EA  LF  M+  +  + +  +Y +M+ IYG     + 
Sbjct: 181 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQ-NVVTYNSMMMIYGKTLEHEK 239

Query: 452 AIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
           A  L +EM   G+  N +  + +I   GK  ++D    +F      GV+ D  L   ++
Sbjct: 240 ANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMI 298



 Score =  115 bits (289), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 162/345 (46%), Gaps = 6/345 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K     P + + YN  +      + F+    L +EM +  +  +  +YS
Sbjct: 62  YSKAISIFSRLKRSGFTP-DLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYS 120

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY + G  +E   L+      
Sbjct: 121 TLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 180

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   +  N+V YN+++   GK  +   A
Sbjct: 181 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEKA 240

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R +   +D +LY T++  
Sbjct: 241 NNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVA 300

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K      PDN      ++I    G ++ A  +F +  + G   
Sbjct: 301 YERAGLVAHAKRLLHELK-----SPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVK 355

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
           ++     +I    K ++  ++V VF      G  PD  +   +L+
Sbjct: 356 DITVFERMIHLFSKYKKYANVVEVFDKMRGLGYFPDSNVIALVLN 400



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 126/265 (47%), Gaps = 1/265 (0%)

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M +  L PD  TYS ++  + K G  +  LS  ++        D + +S L ++  +  D
Sbjct: 2   MRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCD 61

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
           Y     +   +K  G  P+LV YN ++   GKA     ARSL  EM  +G+ P+  + + 
Sbjct: 62  YSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYST 121

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           L+ +Y + +   +AL ++  MRE K  +D    N ++++   +G+ +EA++LF  M+   
Sbjct: 122 LLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 181

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
             +P+  SY  +L +YG       AI LF  M    +  NV+    ++   GK    +  
Sbjct: 182 -IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEKA 240

Query: 488 VRVFGVSIDRGVKPDDRLCGCLLSV 512
             +     +RG++P+      ++S+
Sbjct: 241 NNLIQEMQNRGIEPNSITYSTIISI 265



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 121/246 (49%), Gaps = 5/246 (2%)

Query: 218 IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL 277
           IE + ++Y+T++       LF EAI  F  M +  ++ + VTY++++ +Y K+ + E+  
Sbjct: 182 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEKAN 241

Query: 278 SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
           +L +     G +P+ I +S +  ++G+ G  D    + Q+++S GV+ + V+Y T++ A 
Sbjct: 242 NLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAY 301

Query: 338 GKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDF 397
            +AG    A+ L  E+     +PD       I I   A   ++A  ++ +  +     D 
Sbjct: 302 ERAGLVAHAKRLLHELK----SPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDI 357

Query: 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE 457
            ++  ++++ +          +F+ M+   Y  PD+     +LN YG     D A  ++ 
Sbjct: 358 TVFERMIHLFSKYKKYANVVEVFDKMRGLGYF-PDSNVIALVLNAYGKLHEFDKANGVYM 416

Query: 458 EMSELG 463
           EM E+G
Sbjct: 417 EMQEVG 422



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 96/217 (44%), Gaps = 1/217 (0%)

Query: 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
           EM+   + P+   Y+TL+   GK G    A S   +M +  +  D    + LI++  K  
Sbjct: 1   EMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLC 60

Query: 377 WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY 436
               A+ ++ R++ + +  D + YN ++N+     L  EA  L  +M+ +    P+  SY
Sbjct: 61  DYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAG-VMPNTASY 119

Query: 437 TAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496
           + +L +Y        A+ +F EM E+   +++  C  +I   G+     +  ++F     
Sbjct: 120 STLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK 179

Query: 497 RGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN 533
            G++P+      LL V    E   +   +   +Q+ N
Sbjct: 180 MGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKN 216



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/242 (21%), Positives = 101/242 (41%), Gaps = 5/242 (2%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           P+  +    L +    + + ++   F  ++ +N+     + YN  M       + +    
Sbjct: 184 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQ-NVVTYNSMMMIYGKTLEHEKANN 242

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  EM +  IE ++ITYSTII+   +    D A   F+++  +G+  D+V Y  ++  Y 
Sbjct: 243 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYE 302

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           ++G V       +R +     PD I       +   +G  +   YV ++    G   ++ 
Sbjct: 303 RAGLVAHA----KRLLHELKSPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDIT 358

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
           V+  ++    K  K      +FD+M   G  PD   +  ++  YGK      A  ++  M
Sbjct: 359 VFERMIHLFSKYKKYANVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANGVYMEM 418

Query: 389 RE 390
           +E
Sbjct: 419 QE 420


>gi|18071404|gb|AAL58263.1|AC068923_5 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 1219

 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 142/292 (48%), Gaps = 1/292 (0%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
           +EM+   I  + +TYS+II    +    D+A+E    M K G+MP+  TY++I+  Y  S
Sbjct: 223 HEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSS 282

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
           G+ +E +   ++  + G +PD + ++ L     ++G     R +   M   G++P +  Y
Sbjct: 283 GQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTY 342

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
            TLL+     G       L D MV +G+ P+    + LI  Y K      A+ ++ +MR+
Sbjct: 343 GTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQ 402

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
                D + Y T++ +    G VE+A R FE M + +   P N  Y ++++        D
Sbjct: 403 QGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQM-IDERLSPGNIVYNSLIHSLCIFDKWD 461

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            A EL  EM + G+ ++ +    +I    K  R+ +  ++F + +  GVKPD
Sbjct: 462 KAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPD 513



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 151/304 (49%), Gaps = 10/304 (3%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTM----KSLRFGRQFQLIEQLANEMVSNEIELDNIT 224
           ++   F+ ++ Q L P +T+ Y   +    KS R     +  EQ+ +E +S      NI 
Sbjct: 392 QAMLVFSKMRQQGLNP-DTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSP----GNIV 446

Query: 225 YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
           Y+++I      + +D+A E    M   G+  D + +++I+D + K G+V E   L++  V
Sbjct: 447 YNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMV 506

Query: 285 ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344
             G KPD I +S L   +  +G  D    +L  M S+G++P+ V YNTL+    K  +  
Sbjct: 507 RIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRME 566

Query: 345 LARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
            A  LF EM  SG++PD  T   +++   + R    A EL+  + E+   ++   YN +L
Sbjct: 567 DALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIIL 626

Query: 405 NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
           +      L +EA R+F+++ L+D  + +  ++  M+      G  D A +LF  +S  G+
Sbjct: 627 HGLCKNNLTDEALRMFQNLCLTDL-QLETRTFNIMIGALLKVGRNDEAKDLFAALSANGL 685

Query: 465 AINV 468
             +V
Sbjct: 686 VPDV 689



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 122/276 (44%), Gaps = 7/276 (2%)

Query: 241 AIEWFERMYKTG---LMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS- 296
           A+  + RM + G   + P+  TY  ++     +G+++   +     +  G++ D IAF+ 
Sbjct: 72  AVSRYNRMARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTP 131

Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356
           +L  +  +    D +  VL+ M  LG  PN+  YN LL+ +    +   A  L   M + 
Sbjct: 132 LLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDD 191

Query: 357 G--LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
           G    PD  + T +I  + K      A   +  M +     + + Y++++        ++
Sbjct: 192 GGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMD 251

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
           +A  +   M + +   P+  +Y ++++ Y S G    AI   ++M   GV  +V+    L
Sbjct: 252 KAMEVLTSM-VKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSL 310

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
           +  L K  R  +  ++F     RG+KP+    G LL
Sbjct: 311 MDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLL 346



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 102/241 (42%), Gaps = 45/241 (18%)

Query: 172 FFFNWIKSQNLF--------PMETIFYNVTMKS-LRFGRQFQLIEQLANEMVSNEIELDN 222
            F  W K++ L          ++TIF+N  + S  + GR  +  E+L + MV   ++ D 
Sbjct: 456 IFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIE-SEKLFDLMVRIGVKPDI 514

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           ITYST+I         DEA +    M   G+ PD VTY+ +++ Y K  ++E+ L L+  
Sbjct: 515 ITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFRE 574

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLE------- 335
             +SG  PD I ++++ +   ++      + +   +   G Q  L  YN +L        
Sbjct: 575 MESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNL 634

Query: 336 ----------------------------AMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
                                       A+ K G+   A+ LF  +  +GL PD +T + 
Sbjct: 635 TDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSL 694

Query: 368 L 368
           +
Sbjct: 695 M 695



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/174 (21%), Positives = 83/174 (47%), Gaps = 1/174 (0%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           + +   F  ++S  + P + I YN+ ++ L   R+    ++L   +  +  +L+  TY+ 
Sbjct: 566 EDALVLFREMESSGVSP-DIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNI 624

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           I+    + NL DEA+  F+ +  T L  +  T++ ++    K G+ +E   L+    A+G
Sbjct: 625 ILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANG 684

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG 341
             PD   +S++ +   E G  + +  +   M+  G   N  + N+++  + + G
Sbjct: 685 LVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRG 738



 Score = 41.2 bits (95), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 44/237 (18%), Positives = 98/237 (41%), Gaps = 43/237 (18%)

Query: 177 IKSQNLFPM--------ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           I+S+ LF +        + I Y+  +       +     +L   MVS  ++ D +TY+T+
Sbjct: 496 IESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTL 555

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAIL-------------DVYA------- 268
           I    + +  ++A+  F  M  +G+ PD +TY+ IL             ++Y        
Sbjct: 556 INGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGT 615

Query: 269 ---------------KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRY 313
                          K+   +E L +++    +  + +   F+++     + G  D  + 
Sbjct: 616 QLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKD 675

Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK 370
           +   + + G+ P++  Y+ + E + + G       LF  M E+G T + + L ++++
Sbjct: 676 LFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVR 732


>gi|302759535|ref|XP_002963190.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
 gi|300168458|gb|EFJ35061.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
          Length = 573

 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 95/357 (26%), Positives = 166/357 (46%), Gaps = 4/357 (1%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           P++ T    +  L   +   K+Y     ++       + + Y+  +       +     +
Sbjct: 39  PNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACE 98

Query: 209 LANEMVSNE-IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           +  EMV+ + I  D +TY++++    R    D A E    M   G+ PD+ T+SA++  +
Sbjct: 99  ILREMVTRDGIAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGW 158

Query: 268 AKSGKVEEVLSLY-ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
             + KV+E L LY E   +S WKPD + ++ L   F +SG+ +    +L  M+     PN
Sbjct: 159 CNARKVDEALKLYKEILTSSSWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPN 218

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
           +V Y++LL  + KAG    A  LF  M   G  P+  T T LI     A     A  L +
Sbjct: 219 VVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMD 278

Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
            M     P D + YN LL+    +G +EEA++LF++M  +  C PD  +YT ++  + + 
Sbjct: 279 EMTATCCPPDTVSYNALLDGYCRLGRIEEAKQLFKEMA-TKSCLPDRITYTCLVRGFCNA 337

Query: 447 GNVDNAIELFEEM-SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
             ++ A  L E M +  G+  +V+  + ++    +A+R  +        I R V P+
Sbjct: 338 SRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPN 394



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 106/364 (29%), Positives = 173/364 (47%), Gaps = 14/364 (3%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF-ERMYKTGLMPDEVTYSAILDV 266
           ++  EM    +E D  T+S +IT        DEA++ + E +  +   PD VTY+A++D 
Sbjct: 134 EMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSSWKPDVVTYTALIDG 193

Query: 267 YAKSGKVEEVLSLYERGVASGWK--PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQ 324
           + KSG +E+ + +   GV  G K  P+ + +S L     ++GD D    + + M S G  
Sbjct: 194 FCKSGNLEKAMKML--GVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCV 251

Query: 325 PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384
           PN+V Y TL+  +  A K   AR L DEM  +   PD  +  AL+  Y +    ++A +L
Sbjct: 252 PNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQL 311

Query: 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYG 444
           ++ M       D I Y  L+    +   +EEA  L E+MK +    PD  +Y+ ++  Y 
Sbjct: 312 FKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYS 371

Query: 445 SGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR 504
                  A E  +EM    VA N +  + LI  L KA R+D  + V    +++ V+P   
Sbjct: 372 RAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPS-- 429

Query: 505 LCGCLLSVV-SLCETS--EDVGKVITCL--QQANPKLVAFLNLIEDNS-TGFENIKEEFR 558
             G   SV+ +LC     ++  K++  +      P +V +  L+E  S TG   I  E  
Sbjct: 430 -VGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELF 488

Query: 559 NVIK 562
            V++
Sbjct: 489 EVMR 492



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 86/407 (21%), Positives = 169/407 (41%), Gaps = 20/407 (4%)

Query: 66  EQLKPLSSTTLSPTKNDRTPLLSKPKSTWVNPTKPRRSVLSLQRQKRSTYSYNPRVRDLK 125
           E ++ +    + P K   + L++     W N  K   + L L ++  ++ S+ P V    
Sbjct: 134 EMVREMKLKGVEPDKFTFSALITG----WCNARKVDEA-LKLYKEILTSSSWKPDVVTYT 188

Query: 126 LFARKLNDCDNTEEAF-LRAITE----IPHQPTRENALLILNSLKFWQKSYFFFNWIKSQ 180
                     N E+A  +  + E    +P+  T  + L  L       ++   F  + S+
Sbjct: 189 ALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSK 248

Query: 181 NLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDE 240
              P   + Y   +  L    +      L +EM +     D ++Y+ ++    R    +E
Sbjct: 249 GCVP-NVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLDGYCRLGRIEE 307

Query: 241 AIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER-GVASGWKPDPIAFSVLG 299
           A + F+ M     +PD +TY+ ++  +  + ++EE   L E    A+G  PD + +S++ 
Sbjct: 308 AKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVV 367

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
             +  +  +      +QEM +  V PN V Y++L++ + KAG+   A  +   MV   + 
Sbjct: 368 AGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVDHAMEVLKNMVNKRVE 427

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
           P   T  ++I    +     +A +L   M  +      + Y TLL   +  G +E A  L
Sbjct: 428 PSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYEL 487

Query: 420 FEDMKLSDYCK-------PDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           FE M+             P+  +++A++        +D A+ + EE+
Sbjct: 488 FEVMRKKAKKSSSAANLVPEQ-AFSALIRGLCKAREIDKAMAVVEEL 533



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 130/285 (45%), Gaps = 44/285 (15%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS---GKVEEVLSL 279
           +T++ II    + N   +A+  FE+M +  + P+E TY+ +++   K+    K  EVL  
Sbjct: 8   VTWTIIIDGFCKANQLKQALACFEKM-REFVAPNERTYNVVVNGLCKARLTSKAYEVLKE 66

Query: 280 YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL-GVQPNLVVYNTLLEAMG 338
              G      PD + +S +   F + G+ D    +L+EM +  G+ P++V Y ++++ + 
Sbjct: 67  MRDG--KSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVDGLC 124

Query: 339 KAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW-ERMRENKWPMDF 397
           + GK   A  +  EM   G+ PD+ T +ALI  +  AR   +AL+L+ E +  + W    
Sbjct: 125 RDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSSW---- 180

Query: 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE 457
                                           KPD  +YTA+++ +   GN++ A+++  
Sbjct: 181 --------------------------------KPDVVTYTALIDGFCKSGNLEKAMKMLG 208

Query: 458 EMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            M       NV+  + L+  L KA  +D  + +F     +G  P+
Sbjct: 209 VMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPN 253



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 133/292 (45%), Gaps = 15/292 (5%)

Query: 184 PMETIFYNVTMKS-LRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
           P +T+ YN  +    R GR  +  +QL  EM +     D ITY+ ++      +  +EA 
Sbjct: 286 PPDTVSYNALLDGYCRLGR-IEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEAR 344

Query: 243 EWFERM-YKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKM 301
              E M    G+ PD VTYS ++  Y+++ +  E     +  +A    P+ + +S L   
Sbjct: 345 FLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDG 404

Query: 302 FGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD 361
             ++G  D    VL+ M +  V+P++  +N+++ A+ + G    A  L   M   GL P 
Sbjct: 405 LCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPG 464

Query: 362 EKTLTALIKIYGKARWAKDALELWERMR---------ENKWPMDFILYNTLLNMCADIGL 412
             T T L++ + +    + A EL+E MR          N  P     ++ L+        
Sbjct: 465 MVTYTTLLEGFSRTGRMEIAYELFEVMRKKAKKSSSAANLVPEQ--AFSALIRGLCKARE 522

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
           +++A  + E+++ S  C+P      A+++     G  + A +L   +S++G+
Sbjct: 523 IDKAMAVVEELR-SRECEPAEEDCLAIVDGLLRAGRTEEAGKLINSISKVGL 573



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/230 (19%), Positives = 90/230 (39%), Gaps = 44/230 (19%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           +++ F    +K+      + + Y++ +      ++F    +   EM++  +  + +TYS+
Sbjct: 341 EEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSS 400

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           +I    +    D A+E  + M    + P   T+++++    + G ++E   L     A G
Sbjct: 401 LIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHG 460

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
            +P                                    +V Y TLLE   + G+  +A 
Sbjct: 461 LEP-----------------------------------GMVTYTTLLEGFSRTGRMEIAY 485

Query: 348 SLFDEM--------VESGLTPDEKTLTALIKIYGKARWAKDALELWERMR 389
            LF+ M          + L P E+  +ALI+   KAR    A+ + E +R
Sbjct: 486 ELFEVMRKKAKKSSSAANLVP-EQAFSALIRGLCKAREIDKAMAVVEELR 534


>gi|125544564|gb|EAY90703.1| hypothetical protein OsI_12306 [Oryza sativa Indica Group]
          Length = 644

 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 95/368 (25%), Positives = 169/368 (45%), Gaps = 40/368 (10%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + YN  +K L   +++  +E+L +EMV  +   + +T++T+I    R  LF+   E  
Sbjct: 215 DIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVL 274

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP--------------- 290
            +M + G  PD   Y+ I+D   K G +E    +  R  + G KP               
Sbjct: 275 AQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSA 334

Query: 291 --------------------DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
                               D + F++L   F ++G  D +  +L++M S G  P+++ Y
Sbjct: 335 ERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITY 394

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK-IYGKARWAKDALELWERMR 389
            T++    K G    A  L   M   G  P+  + T ++K +    RW  DA EL  +M 
Sbjct: 395 TTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWV-DAEELMSQMI 453

Query: 390 ENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNV 449
           +   P + + +NTL+N     GLVE+A  L + M L + C PD  SY+ +++  G  G  
Sbjct: 454 QQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQM-LVNGCSPDLISYSTVIDGLGKAGKT 512

Query: 450 DNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCL 509
           + A+EL   M   G++ N +  + +   L +  R++ ++++F    D  ++ D  L   +
Sbjct: 513 EEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAV 572

Query: 510 LSVVSLCE 517
           +S  SLC+
Sbjct: 573 IS--SLCK 578



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/319 (26%), Positives = 158/319 (49%), Gaps = 5/319 (1%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
             N + S  L P   + YN  +K L    +++  E+L +EM   +  LD++T++ ++   
Sbjct: 308 ILNRMPSYGLKP-NVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFF 366

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +  L D  IE  E+M   G MPD +TY+ +++ + K G ++E + L +   + G KP+ 
Sbjct: 367 CQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNT 426

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           ++++++ K    +G +     ++ +M   G  PN V +NTL+  + K G    A  L  +
Sbjct: 427 VSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQ 486

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M+ +G +PD  + + +I   GKA   ++ALEL   M       + I+Y+++    +  G 
Sbjct: 487 MLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGR 546

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
           V +  ++F+++K +   + D   Y A+++        D AI+ F  M   G   N    T
Sbjct: 547 VNKVIQMFDNIKDTTI-RSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYT 605

Query: 473 CLIQCL---GKARRIDDLV 488
            LI+ L   G A+   +L+
Sbjct: 606 MLIKGLASEGLAKEAQELL 624



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/302 (24%), Positives = 143/302 (47%), Gaps = 1/302 (0%)

Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS 261
             ++  ++ N M S  ++ + + Y+T++        + EA E    M++     D+VT++
Sbjct: 301 HLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFN 360

Query: 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
            ++D + ++G V+ V+ L E+ ++ G  PD I ++ +   F + G  D    +L+ M S 
Sbjct: 361 ILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSC 420

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
           G +PN V Y  +L+ +  AG+   A  L  +M++ G  P+  T   LI    K    + A
Sbjct: 421 GCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQA 480

Query: 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
           +EL ++M  N    D I Y+T+++     G  EEA  L   M ++    P+   Y+++  
Sbjct: 481 IELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVM-VNKGISPNTIIYSSIAC 539

Query: 442 IYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
                G V+  I++F+ + +  +  + +    +I  L K    D  +  F   +  G  P
Sbjct: 540 ALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMP 599

Query: 502 DD 503
           ++
Sbjct: 600 NE 601



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 145/319 (45%), Gaps = 5/319 (1%)

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           PM  +      +S  F    +++E +  +  + +    N+  + I  C + C   DEA+ 
Sbjct: 147 PMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAI--CEQGC--VDEAVG 202

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
              ++   G   D V+Y+A+L     + +  +V  L +  V     P+ + F+ L     
Sbjct: 203 LLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLC 262

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
            +G ++ +  VL +M   G  P++ +Y T+++ + K G   +A  + + M   GL P+  
Sbjct: 263 RNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVV 322

Query: 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
               ++K    A   K+A EL   M +   P+D + +N L++     GLV+    L E M
Sbjct: 323 CYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQM 382

Query: 424 KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483
            LS  C PD  +YT ++N +   G +D A+ L + MS  G   N +  T +++ L  A R
Sbjct: 383 -LSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGR 441

Query: 484 IDDLVRVFGVSIDRGVKPD 502
             D   +    I +G  P+
Sbjct: 442 WVDAEELMSQMIQQGCPPN 460



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 61/276 (22%), Positives = 122/276 (44%), Gaps = 37/276 (13%)

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI- 242
           P++ + +N+ +           + +L  +M+S+    D ITY+T+I    +  L DEA+ 
Sbjct: 353 PLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVM 412

Query: 243 ----------------------------------EWFERMYKTGLMPDEVTYSAILDVYA 268
                                             E   +M + G  P+ VT++ +++   
Sbjct: 413 LLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLC 472

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           K G VE+ + L ++ + +G  PD I++S +    G++G  +    +L  M + G+ PN +
Sbjct: 473 KKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTI 532

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD-ALELWER 387
           +Y+++  A+ + G+      +FD + ++ +  D     A+I    K RW  D A++ +  
Sbjct: 533 IYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCK-RWETDRAIDFFAY 591

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
           M  N    +   Y  L+   A  GL +EA+ L  ++
Sbjct: 592 MVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSEL 627



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/298 (24%), Positives = 116/298 (38%), Gaps = 36/298 (12%)

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           +A+E  + M   G  P    Y  IL+   +SG     + + E   A G   D    +++ 
Sbjct: 129 DALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVL 188

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMV----- 354
               E G  D    +L+++   G + ++V YN +L+ +  A + G    L DEMV     
Sbjct: 189 NAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCA 248

Query: 355 ------------------------------ESGLTPDEKTLTALIKIYGKARWAKDALEL 384
                                         E G TPD +    +I    K    + A E+
Sbjct: 249 PNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEI 308

Query: 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYG 444
             RM       + + YNT+L         +EAE L  +M   D C  D+ ++  +++ + 
Sbjct: 309 LNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKD-CPLDDVTFNILVDFFC 367

Query: 445 SGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
             G VD  IEL E+M   G   +V+  T +I    K   ID+ V +       G KP+
Sbjct: 368 QNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPN 425



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/229 (21%), Positives = 93/229 (40%), Gaps = 1/229 (0%)

Query: 255 PDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYV 314
           P+  T+  ++      G++ + L + +     G  P P  + V+ +    SG +     V
Sbjct: 109 PNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRV 168

Query: 315 LQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK 374
           L+ M + G   +    N +L A+ + G    A  L  ++   G   D  +  A++K    
Sbjct: 169 LEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCM 228

Query: 375 ARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNY 434
           A+   D  EL + M       + + +NTL+      GL E    +   M     C PD  
Sbjct: 229 AKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMS-EHGCTPDIR 287

Query: 435 SYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483
            Y  +++     G+++ A E+   M   G+  NV+    +++ L  A R
Sbjct: 288 MYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAER 336



 Score = 47.0 bits (110), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 74/183 (40%), Gaps = 1/183 (0%)

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382
           V PN   +  ++  +   G+   A  + DEM   G  P       +++   ++   ++++
Sbjct: 107 VPPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSV 166

Query: 383 ELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNI 442
            + E M      +D    N +LN   + G V+EA  L   +     C+ D  SY A+L  
Sbjct: 167 RVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFG-CEADIVSYNAVLKG 225

Query: 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
                   +  EL +EM  +  A N++    LI  L +    + +  V     + G  PD
Sbjct: 226 LCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPD 285

Query: 503 DRL 505
            R+
Sbjct: 286 IRM 288



 Score = 45.1 bits (105), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 31/137 (22%), Positives = 62/137 (45%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + I Y+  +  L    + +   +L N MV+  I  + I YS+I     R    ++ I+ F
Sbjct: 495 DLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMF 554

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           + +  T +  D V Y+A++    K  + +  +  +   V++G  P+   +++L K     
Sbjct: 555 DNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASE 614

Query: 306 GDYDGIRYVLQEMKSLG 322
           G     + +L E+ S G
Sbjct: 615 GLAKEAQELLSELCSRG 631


>gi|108709396|gb|ABF97191.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215687193|dbj|BAG91758.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222625245|gb|EEE59377.1| hypothetical protein OsJ_11489 [Oryza sativa Japonica Group]
          Length = 644

 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 95/368 (25%), Positives = 169/368 (45%), Gaps = 40/368 (10%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + YN  +K L   +++  +E+L +EMV  +   + +T++T+I    R  LF+   E  
Sbjct: 215 DIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVL 274

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP--------------- 290
            +M + G  PD   Y+ I+D   K G +E    +  R  + G KP               
Sbjct: 275 AQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSA 334

Query: 291 --------------------DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
                               D + F++L   F ++G  D +  +L++M S G  P+++ Y
Sbjct: 335 ERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITY 394

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK-IYGKARWAKDALELWERMR 389
            T++    K G    A  L   M   G  P+  + T ++K +    RW  DA EL  +M 
Sbjct: 395 TTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWV-DAEELMSQMI 453

Query: 390 ENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNV 449
           +   P + + +NTL+N     GLVE+A  L + M L + C PD  SY+ +++  G  G  
Sbjct: 454 QQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQM-LVNGCSPDLISYSTVIDGLGKAGKT 512

Query: 450 DNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCL 509
           + A+EL   M   G++ N +  + +   L +  R++ ++++F    D  ++ D  L   +
Sbjct: 513 EEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAV 572

Query: 510 LSVVSLCE 517
           +S  SLC+
Sbjct: 573 IS--SLCK 578



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/319 (26%), Positives = 158/319 (49%), Gaps = 5/319 (1%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
             N + S  L P   + YN  +K L    +++  E+L +EM   +  LD++T++ ++   
Sbjct: 308 ILNRMPSYGLKP-NVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFF 366

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +  L D  IE  E+M   G MPD +TY+ +++ + K G ++E + L +   + G KP+ 
Sbjct: 367 CQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNT 426

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           ++++++ K    +G +     ++ +M   G  PN V +NTL+  + K G    A  L  +
Sbjct: 427 VSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQ 486

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M+ +G +PD  + + +I   GKA   ++ALEL   M       + I+Y+++    +  G 
Sbjct: 487 MLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGR 546

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
           V +  ++F+++K +   + D   Y A+++        D AI+ F  M   G   N    T
Sbjct: 547 VNKVIQMFDNIKDTTI-RSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYT 605

Query: 473 CLIQCL---GKARRIDDLV 488
            LI+ L   G A+   +L+
Sbjct: 606 MLIKGLASEGLAKEAQELL 624



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/302 (24%), Positives = 143/302 (47%), Gaps = 1/302 (0%)

Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS 261
             ++  ++ N M S  ++ + + Y+T++        + EA E    M++     D+VT++
Sbjct: 301 HLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFN 360

Query: 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
            ++D + ++G V+ V+ L E+ ++ G  PD I ++ +   F + G  D    +L+ M S 
Sbjct: 361 ILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSC 420

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
           G +PN V Y  +L+ +  AG+   A  L  +M++ G  P+  T   LI    K    + A
Sbjct: 421 GCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQA 480

Query: 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
           +EL ++M  N    D I Y+T+++     G  EEA  L   M ++    P+   Y+++  
Sbjct: 481 IELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVM-VNKGISPNTIIYSSIAC 539

Query: 442 IYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
                G V+  I++F+ + +  +  + +    +I  L K    D  +  F   +  G  P
Sbjct: 540 ALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMP 599

Query: 502 DD 503
           ++
Sbjct: 600 NE 601



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 145/319 (45%), Gaps = 5/319 (1%)

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           PM  +      +S  F    +++E +  +  + +    N+  + I  C + C   DEA+ 
Sbjct: 147 PMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAI--CEQGC--VDEAVG 202

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
              ++   G   D V+Y+A+L     + +  +V  L +  V     P+ + F+ L     
Sbjct: 203 LLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLC 262

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
            +G ++ +  VL +M   G  P++ +Y T+++ + K G   +A  + + M   GL P+  
Sbjct: 263 RNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVV 322

Query: 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
               ++K    A   K+A EL   M +   P+D + +N L++     GLV+    L E M
Sbjct: 323 CYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQM 382

Query: 424 KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483
            LS  C PD  +YT ++N +   G +D A+ L + MS  G   N +  T +++ L  A R
Sbjct: 383 -LSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGR 441

Query: 484 IDDLVRVFGVSIDRGVKPD 502
             D   +    I +G  P+
Sbjct: 442 WVDAEELMSQMIQQGCPPN 460



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 61/276 (22%), Positives = 122/276 (44%), Gaps = 37/276 (13%)

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI- 242
           P++ + +N+ +           + +L  +M+S+    D ITY+T+I    +  L DEA+ 
Sbjct: 353 PLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVM 412

Query: 243 ----------------------------------EWFERMYKTGLMPDEVTYSAILDVYA 268
                                             E   +M + G  P+ VT++ +++   
Sbjct: 413 LLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLC 472

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           K G VE+ + L ++ + +G  PD I++S +    G++G  +    +L  M + G+ PN +
Sbjct: 473 KKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTI 532

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD-ALELWER 387
           +Y+++  A+ + G+      +FD + ++ +  D     A+I    K RW  D A++ +  
Sbjct: 533 IYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCK-RWETDRAIDFFAY 591

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
           M  N    +   Y  L+   A  GL +EA+ L  ++
Sbjct: 592 MVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSEL 627



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/298 (24%), Positives = 116/298 (38%), Gaps = 36/298 (12%)

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           +A+E  + M   G  P    Y  IL+   +SG     + + E   A G   D    +++ 
Sbjct: 129 DALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVL 188

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMV----- 354
               E G  D    +L+++   G + ++V YN +L+ +  A + G    L DEMV     
Sbjct: 189 NAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCA 248

Query: 355 ------------------------------ESGLTPDEKTLTALIKIYGKARWAKDALEL 384
                                         E G TPD +    +I    K    + A E+
Sbjct: 249 PNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEI 308

Query: 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYG 444
             RM       + + YNT+L         +EAE L  +M   D C  D+ ++  +++ + 
Sbjct: 309 LNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKD-CPLDDVTFNILVDFFC 367

Query: 445 SGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
             G VD  IEL E+M   G   +V+  T +I    K   ID+ V +       G KP+
Sbjct: 368 QNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPN 425



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/229 (21%), Positives = 93/229 (40%), Gaps = 1/229 (0%)

Query: 255 PDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYV 314
           P+  T+  ++      G++ + L + +     G  P P  + V+ +    SG +     V
Sbjct: 109 PNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRV 168

Query: 315 LQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK 374
           L+ M + G   +    N +L A+ + G    A  L  ++   G   D  +  A++K    
Sbjct: 169 LEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCM 228

Query: 375 ARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNY 434
           A+   D  EL + M       + + +NTL+      GL E    +   M     C PD  
Sbjct: 229 AKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMS-EHGCTPDIR 287

Query: 435 SYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483
            Y  +++     G+++ A E+   M   G+  NV+    +++ L  A R
Sbjct: 288 MYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAER 336



 Score = 47.0 bits (110), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 74/183 (40%), Gaps = 1/183 (0%)

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382
           V PN   +  ++  +   G+   A  + DEM   G  P       +++   ++   ++++
Sbjct: 107 VPPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSV 166

Query: 383 ELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNI 442
            + E M      +D    N +LN   + G V+EA  L   +     C+ D  SY A+L  
Sbjct: 167 RVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFG-CEADIVSYNAVLKG 225

Query: 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
                   +  EL +EM  +  A N++    LI  L +    + +  V     + G  PD
Sbjct: 226 LCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPD 285

Query: 503 DRL 505
            R+
Sbjct: 286 IRM 288



 Score = 45.1 bits (105), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 31/137 (22%), Positives = 62/137 (45%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + I Y+  +  L    + +   +L N MV+  I  + I YS+I     R    ++ I+ F
Sbjct: 495 DLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMF 554

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           + +  T +  D V Y+A++    K  + +  +  +   V++G  P+   +++L K     
Sbjct: 555 DNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASE 614

Query: 306 GDYDGIRYVLQEMKSLG 322
           G     + +L E+ S G
Sbjct: 615 GLAKEAQELLSELCSRG 631


>gi|357111163|ref|XP_003557384.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Brachypodium distachyon]
          Length = 821

 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 95/363 (26%), Positives = 169/363 (46%), Gaps = 5/363 (1%)

Query: 136 NTEEAFLRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMK 195
           N  +  LRA    P + T  N +    +   W+K+      +    + P + + +N+ + 
Sbjct: 211 NIMDDMLRAAIP-PSRTTYNNVINACGAAGNWKKALELCKKMTRNGVGP-DLVTHNIVLS 268

Query: 196 SLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY--KTGL 253
           + + G Q+         M    I  D  T + +I C  +   + EAIE    M   +T  
Sbjct: 269 AFKNGSQYSKAIAYFEMMKGANIAPDTFTLNIVIHCLVKDGQYGEAIELLNSMREKRTQC 328

Query: 254 MPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRY 313
            PD VTY++I+  Y   GKVE+  ++++  VA G KP+ ++++ L   +   G +     
Sbjct: 329 PPDVVTYTSIMHSYYVCGKVEDCKAVFDMMVAEGVKPNIVSYNALLGAYASRGMHADALG 388

Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYG 373
           + + +K  G++P++V Y TLL A G++G+P  AR  F EM ++   P+  +  ALI  YG
Sbjct: 389 IFKLLKQNGLRPDVVSYTTLLNAYGRSGQPEKAREAFKEMRKNSCRPNIVSYNALIDAYG 448

Query: 374 KARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDN 433
            A   K+A+ L   M ++  P D +  +TLL  C     + + + + E  K S   K + 
Sbjct: 449 SAGMFKEAISLLHEMEKDGIPPDVVSISTLLTACGRCRQITKIDTILEAAK-SRGIKLNI 507

Query: 434 YSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGV 493
             Y + +  Y + G+   A+EL+  M    V  + +    LI  L K  +  + ++ F  
Sbjct: 508 VCYNSGIGSYLNFGDYGKALELYAVMMASNVNPDAVTYNILISGLCKVGKYAESLKFFED 567

Query: 494 SID 496
            +D
Sbjct: 568 MVD 570



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 88/388 (22%), Positives = 170/388 (43%), Gaps = 41/388 (10%)

Query: 153 TRENALLILNSLKF---WQKSYFFFNWIKSQN---------------------------- 181
            R N  L++  + F    Q +   F W+K+Q                             
Sbjct: 118 ARRNFPLLIREITFAGSLQHAVHVFRWMKNQENYCARNDIYGMMIRLHARHSQIDQARGL 177

Query: 182 LFPME-------TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKR 234
            F M+          YN  + +     Q++    + ++M+   I     TY+ +I     
Sbjct: 178 FFEMQEWRCKPDADIYNSLIHAHARAGQWRWAINIMDDMLRAAIPPSRTTYNNVINACGA 237

Query: 235 CNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIA 294
              + +A+E  ++M + G+ PD VT++ +L  +    +  + ++ +E    +   PD   
Sbjct: 238 AGNWKKALELCKKMTRNGVGPDLVTHNIVLSAFKNGSQYSKAIAYFEMMKGANIAPDTFT 297

Query: 295 FSVLGKMFGESGDYDGIRYVLQEMKSLGVQ--PNLVVYNTLLEAMGKAGKPGLARSLFDE 352
            +++     + G Y     +L  M+    Q  P++V Y +++ +    GK    +++FD 
Sbjct: 298 LNIVIHCLVKDGQYGEAIELLNSMREKRTQCPPDVVTYTSIMHSYYVCGKVEDCKAVFDM 357

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           MV  G+ P+  +  AL+  Y       DAL +++ +++N    D + Y TLLN     G 
Sbjct: 358 MVAEGVKPNIVSYNALLGAYASRGMHADALGIFKLLKQNGLRPDVVSYTTLLNAYGRSGQ 417

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
            E+A   F++M+  + C+P+  SY A+++ YGS G    AI L  EM + G+  +V+  +
Sbjct: 418 PEKAREAFKEMR-KNSCRPNIVSYNALIDAYGSAGMFKEAISLLHEMEKDGIPPDVVSIS 476

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVK 500
            L+   G+ R+I  +  +   +  RG+K
Sbjct: 477 TLLTACGRCRQITKIDTILEAAKSRGIK 504



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 96/393 (24%), Positives = 167/393 (42%), Gaps = 29/393 (7%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           + YN  + +      F+    L +EM  + I  D ++ ST++T   RC    +     E 
Sbjct: 438 VSYNALIDAYGSAGMFKEAISLLHEMEKDGIPPDVVSISTLLTACGRCRQITKIDTILEA 497

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
               G+  + V Y++ +  Y   G   + L LY   +AS   PD + +++L     + G 
Sbjct: 498 AKSRGIKLNIVCYNSGIGSYLNFGDYGKALELYAVMMASNVNPDAVTYNILISGLCKVGK 557

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
           Y       ++M  L +     VY++L+ +  K GK   A S F  M ESG  PD  T TA
Sbjct: 558 YAESLKFFEDMVDLRIPLTKEVYSSLICSYVKQGKLTEAESTFSSMKESGCLPDVLTYTA 617

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           +I+ Y      ++A +L++ M  N    D I+ ++L+         E   +L E MK  +
Sbjct: 618 MIEAYNDDGSWRNAWDLFKEMEGNTVQPDAIICSSLMEALNRGSQHERVLQLMELMK--E 675

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDN---AIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484
            C P N    A   I  S   + +   A E+ E +     +I+V     L+  LGK  + 
Sbjct: 676 KCIPLNQK--AYFEIIASCSMLRDWKTASEIIEHLDSSLSSISVGTLNHLLTFLGKCGKT 733

Query: 485 DDLVRVFGVSIDR----GVKPDDRLCGCLLSV------VSLCETSEDVGKVITCLQQANP 534
           + ++++F   +      GV     L   LL+V      + + +  ED G         +P
Sbjct: 734 ECMMKLFYKMMSSCSTVGVSTYTVLLRNLLAVGKWRKYIEVLQWMEDAG--------VSP 785

Query: 535 KLVAFLNLI----EDNSTGFENIKEEFRNVIKD 563
            L  + N++     DNS  +  + +E  N +++
Sbjct: 786 TLYMYQNVLPYIWRDNSMDYVTLMQEKINSLRE 818


>gi|414888268|tpg|DAA64282.1| TPA: hypothetical protein ZEAMMB73_921256 [Zea mays]
          Length = 868

 Score =  129 bits (325), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 117/484 (24%), Positives = 199/484 (41%), Gaps = 44/484 (9%)

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
           E L + M+   +  D ++Y  I+           A E F  M  TG   D   Y  +++ 
Sbjct: 271 EMLLHTMLEAGVSPDTVSYRHIVDAFASAGNLSRAAELFSEMAATGHTADASAYLGLMEA 330

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
           + + G   + +++  +  A G  P    + VL  ++G  G +DG+R + +EM++  V P+
Sbjct: 331 HTRVGATADAVAVLRQMQADGCAPTAATYRVLLDLYGRQGRFDGVRQLFREMRT-AVPPD 389

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
              YN L    G  G       LF +M+++G+ PD  T   ++   G      DA E+ E
Sbjct: 390 TATYNVLFRVFGDGGFFKEVVELFHDMLKTGVQPDMVTCENVMAACGHGGLHGDAREVLE 449

Query: 387 RM-RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445
            M RE   P     Y  L+       + EEA   F +M       P   +Y A+   Y  
Sbjct: 450 YMTREGMVPTA-DAYTGLVEALGHAAMYEEAYVAF-NMMTEIGSLPTLETYNALAFAYAR 507

Query: 446 GGNVDNAIELFEEMS-ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR 504
           GG    A  +F  MS   G+  +      LI+   +  R+DD V+ +         PD+R
Sbjct: 508 GGLFQEAEAIFSRMSNNAGIQKSKDSFDALIEAYCQGSRLDDAVKAYMEMRKSRFNPDER 567

Query: 505 LCGCLLSVVSLCETSEDVGKVITCLQQA--NPKLVAF----------------LNLIEDN 546
               +L+   +    ++  +    LQ +   P ++A+                 +L+E+ 
Sbjct: 568 SLEGVLNAYCIAGVIDESKEQFEELQSSVTMPSVIAYCMMLSLYARNDRWTDAYDLLEEM 627

Query: 547 STGFEN---------IKEEFRN---------VIKDTEV---DARRPFCNCLIDICRNRNL 585
            T   +         IK E+ +         V++++ +   D    F N L+ +      
Sbjct: 628 KTNRASSTHQVIASLIKGEYDDSSNWQMVEYVLENSTMEGCDYSFRFFNALLGVLWWFGQ 687

Query: 586 NERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAKIVLREEV 645
             RA  +L     +GL+P L+  T   WSLDV  +S+G A  A+  W+  L   ++ +E 
Sbjct: 688 KGRAARVLDQAVKFGLFPELYRDTKLVWSLDVHRMSMGGALVAVSVWLNKLYDRLVEDED 747

Query: 646 LPQL 649
           LPQL
Sbjct: 748 LPQL 751



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/345 (22%), Positives = 148/345 (42%), Gaps = 15/345 (4%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDN---I 223
           WQ+S   F +++ Q+    +   + + +  L  GRQ   +     E V +++  ++   +
Sbjct: 119 WQRSLRLFKYMQRQSWCRPDEHIHAIVIGVL--GRQGPALLDKCLE-VFHDLPAESRTAL 175

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK----VEEVLSL 279
           +Y+++I    R  L +EA    ++M  TG+ P   TY+ +L   A++       + +L L
Sbjct: 176 SYTSLIAAYARNALHEEARALLDQMKATGVAPTAATYNTVLAACARATDPPVPFDMLLGL 235

Query: 280 Y---ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA 336
           +       +   +PD   ++ L          D    +L  M   GV P+ V Y  +++A
Sbjct: 236 FAEMRHDASPSVRPDLTTYNTLLAAAAVRSLADQSEMLLHTMLEAGVSPDTVSYRHIVDA 295

Query: 337 MGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMD 396
              AG    A  LF EM  +G T D      L++ + +     DA+ +  +M+ +     
Sbjct: 296 FASAGNLSRAAELFSEMAATGHTADASAYLGLMEAHTRVGATADAVAVLRQMQADGCAPT 355

Query: 397 FILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELF 456
              Y  LL++    G  +   +LF +M+ +    PD  +Y  +  ++G GG     +ELF
Sbjct: 356 AATYRVLLDLYGRQGRFDGVRQLFREMRTA--VPPDTATYNVLFRVFGDGGFFKEVVELF 413

Query: 457 EEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
            +M + GV  +++ C  ++   G      D   V       G+ P
Sbjct: 414 HDMLKTGVQPDMVTCENVMAACGHGGLHGDAREVLEYMTREGMVP 458



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 56/277 (20%), Positives = 111/277 (40%), Gaps = 37/277 (13%)

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           P +T  YNV  +    G  F+ + +L ++M+   ++ D +T   ++       L  +A E
Sbjct: 387 PPDTATYNVLFRVFGDGGFFKEVVELFHDMLKTGVQPDMVTCENVMAACGHGGLHGDARE 446

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
             E M + G++P    Y+ +++    +   EE    +      G  P    ++ L   + 
Sbjct: 447 VLEYMTREGMVPTADAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTLETYNALAFAYA 506

Query: 304 ESGDYDGIRYVLQEMKS-LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
             G +     +   M +  G+Q +   ++ L+EA  +  +   A   + EM +S   PDE
Sbjct: 507 RGGLFQEAEAIFSRMSNNAGIQKSKDSFDALIEAYCQGSRLDDAVKAYMEMRKSRFNPDE 566

Query: 363 KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED 422
           ++L  ++  Y  A                                   G+++E++  FE+
Sbjct: 567 RSLEGVLNAYCIA-----------------------------------GVIDESKEQFEE 591

Query: 423 MKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           ++ S    P   +Y  ML++Y       +A +L EEM
Sbjct: 592 LQ-SSVTMPSVIAYCMMLSLYARNDRWTDAYDLLEEM 627



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 40/247 (16%)

Query: 161 LNSLKFWQKSYFFFNWIKSQNLFP-METIFYNVTMKSLRFGRQFQLIEQLANEMVSNE-I 218
           L     ++++Y  FN +      P +ET  YN    +   G  FQ  E + + M +N  I
Sbjct: 470 LGHAAMYEEAYVAFNMMTEIGSLPTLET--YNALAFAYARGGLFQEAEAIFSRMSNNAGI 527

Query: 219 ELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS 278
           +    ++  +I    + +  D+A++ +  M K+   PDE +   +L+ Y  +G ++E   
Sbjct: 528 QKSKDSFDALIEAYCQGSRLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCIAGVIDESKE 587

Query: 279 LYERGVASGWKPDPIAFSVLGKMFGES------------------------------GDY 308
            +E   +S   P  IA+ ++  ++  +                              G+Y
Sbjct: 588 QFEELQSSVTMPSVIAYCMMLSLYARNDRWTDAYDLLEEMKTNRASSTHQVIASLIKGEY 647

Query: 309 DG------IRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
           D       + YVL+     G   +   +N LL  +   G+ G A  + D+ V+ GL P+ 
Sbjct: 648 DDSSNWQMVEYVLENSTMEGCDYSFRFFNALLGVLWWFGQKGRAARVLDQAVKFGLFPEL 707

Query: 363 KTLTALI 369
              T L+
Sbjct: 708 YRDTKLV 714


>gi|302820365|ref|XP_002991850.1| hypothetical protein SELMODRAFT_134282 [Selaginella moellendorffii]
 gi|300140388|gb|EFJ07112.1| hypothetical protein SELMODRAFT_134282 [Selaginella moellendorffii]
          Length = 425

 Score =  129 bits (325), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 145/311 (46%), Gaps = 8/311 (2%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           +T+  NV +  L          +L   M S     D+ TY+ +I    RC   +EA   F
Sbjct: 83  DTLLCNVVLDGLGKANMMDEACKLFASMKSMGCPADDYTYAILIRSLGRCKRDEEATLLF 142

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           + M + G  P    Y+ ++D+Y K+G++E  + + ++ +     PD    + L      +
Sbjct: 143 DEMEERGCTPSAPAYTNVIDIYCKAGRIESAMVVLKKMLDKNLAPDDYTLNSLITAVSRT 202

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G  +    + + MK  GV  N V +N +L+  GKAGK GLA    DEM   G+ P+  T 
Sbjct: 203 GRTELACEIFERMKKSGVAVNTVSFNAMLDCCGKAGKVGLAYQFMDEMEARGIKPNSITF 262

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
             LI   G+A++A +A ++ + MR      D   Y  ++   A  G + +A  +F DM+ 
Sbjct: 263 NTLINCLGRAKYASEAYKVLQEMRSAGLTPDVFTYTCMIEAFAKAGNMGKAFEMFGDMEK 322

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
           +  C  +  +Y  +++     G   +A +++ +M + G+  + +  T L Q  GK     
Sbjct: 323 AG-CSANVVTYNLLIDALVKAGRYQDARDIYFDMKKKGILPDAITATVLQQLAGKC---- 377

Query: 486 DLVRVFGVSID 496
              ++ G+S+D
Sbjct: 378 ---KLSGISLD 385



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/339 (25%), Positives = 160/339 (47%), Gaps = 9/339 (2%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           Y   ++SL       L  +L ++M+   +E D +  + ++    + N+ DEA + F  M 
Sbjct: 52  YKCVIQSLVKAGNVVLAMELLDKMIKTGLEPDTLLCNVVLDGLGKANMMDEACKLFASMK 111

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
             G   D+ TY+ ++    +  + EE   L++     G  P   A++ +  ++ ++G  +
Sbjct: 112 SMGCPADDYTYAILIRSLGRCKRDEEATLLFDEMEERGCTPSAPAYTNVIDIYCKAGRIE 171

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               VL++M    + P+    N+L+ A+ + G+  LA  +F+ M +SG+  +  +  A++
Sbjct: 172 SAMVVLKKMLDKNLAPDDYTLNSLITAVSRTGRTELACEIFERMKKSGVAVNTVSFNAML 231

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
              GKA     A +  + M       + I +NTL+N         EA ++ ++M+ S   
Sbjct: 232 DCCGKAGKVGLAYQFMDEMEARGIKPNSITFNTLINCLGRAKYASEAYKVLQEMR-SAGL 290

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
            PD ++YT M+  +   GN+  A E+F +M + G + NV+    LI  L KA R  D   
Sbjct: 291 TPDVFTYTCMIEAFAKAGNMGKAFEMFGDMEKAGCSANVVTYNLLIDALVKAGRYQDARD 350

Query: 490 VFGVSIDRGVKPD-------DRLCG-CLLSVVSLCETSE 520
           ++     +G+ PD        +L G C LS +SL E  +
Sbjct: 351 IYFDMKKKGILPDAITATVLQQLAGKCKLSGISLDENEQ 389



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 79/278 (28%), Positives = 134/278 (48%), Gaps = 3/278 (1%)

Query: 226 STIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVA 285
           + +I    R +   + ++ F+ + K G  P+  TY  ++    K+G V   + L ++ + 
Sbjct: 18  NAVIAAYGRSSRIHKVMDEFQELDKHGSKPNAYTYKCVIQSLVKAGNVVLAMELLDKMIK 77

Query: 286 SGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGL 345
           +G +PD +  +V+    G++   D    +   MKS+G   +   Y  L+ ++G+  +   
Sbjct: 78  TGLEPDTLLCNVVLDGLGKANMMDEACKLFASMKSMGCPADDYTYAILIRSLGRCKRDEE 137

Query: 346 ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE-NKWPMDFILYNTLL 404
           A  LFDEM E G TP     T +I IY KA   + A+ + ++M + N  P D+ L N+L+
Sbjct: 138 ATLLFDEMEERGCTPSAPAYTNVIDIYCKAGRIESAMVVLKKMLDKNLAPDDYTL-NSLI 196

Query: 405 NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
              +  G  E A  +FE MK S     +  S+ AML+  G  G V  A +  +EM   G+
Sbjct: 197 TAVSRTGRTELACEIFERMKKSGV-AVNTVSFNAMLDCCGKAGKVGLAYQFMDEMEARGI 255

Query: 465 AINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
             N +    LI CLG+A+   +  +V       G+ PD
Sbjct: 256 KPNSITFNTLINCLGRAKYASEAYKVLQEMRSAGLTPD 293



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 94/203 (46%), Gaps = 35/203 (17%)

Query: 185 METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEW 244
           + T+ +N  +       +  L  Q  +EM +  I+ ++IT++T+I C  R     EA + 
Sbjct: 222 VNTVSFNAMLDCCGKAGKVGLAYQFMDEMEARGIKPNSITFNTLINCLGRAKYASEAYKV 281

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
            + M   GL PD  TY+ +++ +AK+G                          +GK F  
Sbjct: 282 LQEMRSAGLTPDVFTYTCMIEAFAKAGN-------------------------MGKAFEM 316

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
            GD          M+  G   N+V YN L++A+ KAG+   AR ++ +M + G+ PD  T
Sbjct: 317 FGD----------MEKAGCSANVVTYNLLIDALVKAGRYQDARDIYFDMKKKGILPDAIT 366

Query: 365 LTALIKIYGKARWAKDALELWER 387
            T L ++ GK + +  +L+  E+
Sbjct: 367 ATVLQQLAGKCKLSGISLDENEQ 389



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 92/189 (48%), Gaps = 1/189 (0%)

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
           +++V N ++ A G++ +       F E+ + G  P+  T   +I+   KA     A+EL 
Sbjct: 13  HVLVSNAVIAAYGRSSRIHKVMDEFQELDKHGSKPNAYTYKCVIQSLVKAGNVVLAMELL 72

Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445
           ++M +     D +L N +L+      +++EA +LF  MK S  C  D+Y+Y  ++   G 
Sbjct: 73  DKMIKTGLEPDTLLCNVVLDGLGKANMMDEACKLFASMK-SMGCPADDYTYAILIRSLGR 131

Query: 446 GGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRL 505
               + A  LF+EM E G   +    T +I    KA RI+  + V    +D+ + PDD  
Sbjct: 132 CKRDEEATLLFDEMEERGCTPSAPAYTNVIDIYCKAGRIESAMVVLKKMLDKNLAPDDYT 191

Query: 506 CGCLLSVVS 514
              L++ VS
Sbjct: 192 LNSLITAVS 200



 Score = 48.1 bits (113), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 57/117 (48%), Gaps = 2/117 (1%)

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
           KP+ Y+Y  ++      GNV  A+EL ++M + G+  + + C  ++  LGKA  +D+  +
Sbjct: 46  KPNAYTYKCVIQSLVKAGNVVLAMELLDKMIKTGLEPDTLLCNVVLDGLGKANMMDEACK 105

Query: 490 VFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ--ANPKLVAFLNLIE 544
           +F      G   DD     L+  +  C+  E+   +   +++    P   A+ N+I+
Sbjct: 106 LFASMKSMGCPADDYTYAILIRSLGRCKRDEEATLLFDEMEERGCTPSAPAYTNVID 162


>gi|222612845|gb|EEE50977.1| hypothetical protein OsJ_31558 [Oryza sativa Japonica Group]
          Length = 1263

 Score =  129 bits (325), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 103/422 (24%), Positives = 199/422 (47%), Gaps = 10/422 (2%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           Y+V M +    R  + +  L  EM ++ ++ +  +Y+  I    +   FDEA     +M 
Sbjct: 323 YSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKME 382

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
             G  PD +T++ ++ V   +G++ +   ++ +   S  KPD + +  L   FG++GD  
Sbjct: 383 NEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQ 442

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
            +  +   MK+ G   N+V Y  +++A+ + G+   A  +FDEM + G+ P++ +  +LI
Sbjct: 443 SVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLI 502

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
             + KA    DALEL++ M  +    +   +   +N     G   +A + +E MK S   
Sbjct: 503 SGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMK-SKGI 561

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
            PD  +  A+L      G +  A  +F E+  +GV+ + +  T +I+C  KA + D+ V+
Sbjct: 562 VPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVK 621

Query: 490 VFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAFLNLIEDNS 547
           +F   I+    PD      L+  +      ++  ++   L++ N  P    +  L+    
Sbjct: 622 IFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLA--G 679

Query: 548 TGFENIKEEFRNVIKDTEVDARRP---FCNCLID-ICRNRNLNERAHELLYLGTLYGLYP 603
            G E   +E  +++++       P     N ++D +C+N  +N+ A ++LY  T  G  P
Sbjct: 680 LGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVND-ALDMLYSMTTKGCIP 738

Query: 604 GL 605
            L
Sbjct: 739 DL 740



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 83/363 (22%), Positives = 166/363 (45%), Gaps = 36/363 (9%)

Query: 218 IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL 277
           I L+  TY+ ++    +     EA+E +  M   G++P   TYS ++  + K   VE VL
Sbjct: 281 IVLNAYTYNGLVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVL 340

Query: 278 SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
            L     A G KP+  ++++  ++ G++  +D    +L +M++ G +P+++ +  L++ +
Sbjct: 341 WLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVL 400

Query: 338 GKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDF 397
             AG+   A+ +F +M +S   PD  T   L+  +G    ++  +E+W  M+ + +  + 
Sbjct: 401 CDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNV 460

Query: 398 ILYNTLLNMCADIGLVEEAERLFEDMK--------------LSDYC-------------- 429
           + Y  +++    +G V EA  +F++MK              +S +               
Sbjct: 461 VAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKH 520

Query: 430 ------KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483
                 KP+ Y++   +N YG  G    AI+ +E M   G+  +V+    ++  L K+ R
Sbjct: 521 MDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGR 580

Query: 484 IDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAFLN 541
           +    RVF      GV PD      ++   S     ++  K+   + + N  P ++A  +
Sbjct: 581 LGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNS 640

Query: 542 LIE 544
           LI+
Sbjct: 641 LID 643



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/270 (24%), Positives = 139/270 (51%), Gaps = 1/270 (0%)

Query: 190  YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
            YN+ + ++    + + + ++  EM     E   +TY+TII+   +    ++AI+ +  + 
Sbjct: 918  YNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLM 977

Query: 250  KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
              G  P   TY  +LD   K+G++E+  +L+   +  G K +   +++L      +G+ +
Sbjct: 978  SQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTE 1037

Query: 310  GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
             + ++ Q+M   G+ P++  Y  +++ + KAG+     + F +++E GL PD  T   LI
Sbjct: 1038 KVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLI 1097

Query: 370  KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
               GK++  ++A+ L+  M++     +   YN+L+      G   EA +++E++ L+   
Sbjct: 1098 DGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEEL-LTKGW 1156

Query: 430  KPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
            KP+ ++Y A++  Y   G+ D+A   +  M
Sbjct: 1157 KPNVFTYNALIRGYSVSGSTDSAYAAYGRM 1186



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 138/318 (43%), Gaps = 1/318 (0%)

Query: 185  METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEW 244
            ++T  YN  +  L       + E L  EM       D  TY+ ++    +    +E ++ 
Sbjct: 878  LKTGLYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKV 937

Query: 245  FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
             E M++ G     VTY+ I+    KS ++E+ + LY   ++ G+ P P  +  L     +
Sbjct: 938  QEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLK 997

Query: 305  SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
            +G  +    +  EM   G + N  +YN LL     AG       LF +MV+ G+ PD K+
Sbjct: 998  AGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKS 1057

Query: 365  LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
             T +I    KA    D L  + ++ E     D I YN L++       +EEA  LF +M+
Sbjct: 1058 YTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQ 1117

Query: 425  LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484
                  P+ Y+Y +++   G  G    A +++EE+   G   NV     LI+    +   
Sbjct: 1118 KKGIV-PNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSGST 1176

Query: 485  DDLVRVFGVSIDRGVKPD 502
            D     +G  I  G  P+
Sbjct: 1177 DSAYAAYGRMIVGGCLPN 1194



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/340 (23%), Positives = 161/340 (47%), Gaps = 9/340 (2%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           +  +KS+ + P + +  N  +  L    +  + +++ +E+ +  +  D ITY+ +I C  
Sbjct: 553 YELMKSKGIVP-DVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCS 611

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
           + + FDEA++ F  M +   +PD +  ++++D   K+G+ +E   ++ +      +P   
Sbjct: 612 KASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDG 671

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
            ++ L    G  G    + ++L+EM      PNL+ YNT+L+ + K G    A  +   M
Sbjct: 672 TYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSM 731

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
              G  PD  +   +I    K     +A  ++ +M++   P D+    T+L     IGL+
Sbjct: 732 TTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMKKVLIP-DYATLCTILPSFVKIGLM 790

Query: 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTC 473
           +EA  + +D  L    K D  S  +++        ++ +IE  E ++  G+ ++      
Sbjct: 791 KEALHIIKDYFLQPGSKTDRSSCHSLMEGILKKAGIEKSIEFAEIIASSGITLDDFFLCP 850

Query: 474 LIQCLGKARR---IDDLV---RVFGVSIDRGVKPDDRLCG 507
           LI+ L K ++     +LV   + FGVS+  G+  +  +CG
Sbjct: 851 LIKHLCKQKKALEAHELVKKFKSFGVSLKTGLY-NSLICG 889



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 126/256 (49%), Gaps = 3/256 (1%)

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M + G++ +  TY+ ++    KSG   E L +Y   +  G  P    +SVL   FG+  D
Sbjct: 276 MKEAGIVLNAYTYNGLVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRD 335

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
            + + ++L+EM++ GV+PN+  Y   +  +G+A +   A  +  +M   G  PD  T T 
Sbjct: 336 VETVLWLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTV 395

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           LI++   A    DA +++ +M+++    D + Y TLL+   D G  +    ++  MK   
Sbjct: 396 LIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADG 455

Query: 428 YCKPDN-YSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
           Y   DN  +YTA+++     G V  A+E+F+EM + G+         LI    KA R  D
Sbjct: 456 Y--NDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGD 513

Query: 487 LVRVFGVSIDRGVKPD 502
            + +F      G KP+
Sbjct: 514 ALELFKHMDIHGPKPN 529



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 145/335 (43%), Gaps = 37/335 (11%)

Query: 168  QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
            +KS  F   I S  +  ++  F    +K L   ++     +L  +  S  + L    Y++
Sbjct: 827  EKSIEFAEIIASSGI-TLDDFFLCPLIKHLCKQKKALEAHELVKKFKSFGVSLKTGLYNS 885

Query: 228  IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
            +I      NL D A   F  M + G  PDE TY+ +LD   KS ++EE+L          
Sbjct: 886  LICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLK--------- 936

Query: 288  WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
                                      V +EM   G +   V YNT++  + K+ +   A 
Sbjct: 937  --------------------------VQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAI 970

Query: 348  SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
             L+  ++  G +P   T   L+    KA   +DA  L+  M E     +  +YN LLN  
Sbjct: 971  DLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGH 1030

Query: 408  ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
               G  E+   LF+DM +     PD  SYT +++     G +++ +  F ++ E+G+  +
Sbjct: 1031 RIAGNTEKVCHLFQDM-VDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPD 1089

Query: 468  VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            ++    LI  LGK++R+++ V +F     +G+ P+
Sbjct: 1090 LITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPN 1124



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 69/318 (21%), Positives = 128/318 (40%), Gaps = 39/318 (12%)

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
           + + G + EV  + +R +    K +   F+ +    G  G        L  MK  G+  N
Sbjct: 228 HGRVGDMAEVFDVMQRQIV---KANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLN 284

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR------W--- 377
              YN L+  + K+G    A  ++  M+  G+ P  +T + L+  +GK R      W   
Sbjct: 285 AYTYNGLVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLR 344

Query: 378 -----------------------AK---DALELWERMRENKWPMDFILYNTLLNMCADIG 411
                                  AK   +A  +  +M       D I +  L+ +  D G
Sbjct: 345 EMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAG 404

Query: 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC 471
            + +A+ +F  MK SD  KPD  +Y  +L+ +G  G+  + +E++  M   G   NV+  
Sbjct: 405 RISDAKDVFWKMKKSDQ-KPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAY 463

Query: 472 TCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ 531
           T +I  L +  R+ + + +F     +G+ P+      L+S     +   D  ++   +  
Sbjct: 464 TAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDI 523

Query: 532 ANPKLVAFLNLIEDNSTG 549
             PK   + +++  N  G
Sbjct: 524 HGPKPNGYTHVLFINYYG 541



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 106/245 (43%), Gaps = 13/245 (5%)

Query: 309 DGIRYVLQEMKSLGVQPNLVVY----NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
           DG    L+  +S   +P +       N +LE M   G+ G    +FD M    +  +  T
Sbjct: 193 DGPAEALERFRSAARKPRVAQTTASCNYMLELMRGHGRVGDMAEVFDVMQRQIVKANVGT 252

Query: 365 LTAL---IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFE 421
             A+   + + G  R A  AL +   M+E    ++   YN L+      G   EA  ++ 
Sbjct: 253 FAAIFGGLGVEGGLRSAPVALPV---MKEAGIVLNAYTYNGLVYFLVKSGFDREALEVYR 309

Query: 422 DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
            M + D   P   +Y+ ++  +G   +V+  + L  EM   GV  NV   T  I+ LG+A
Sbjct: 310 VM-MVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQA 368

Query: 482 RRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAF 539
           +R D+  R+     + G KPD      L+ V+       D   V   +++++  P  V +
Sbjct: 369 KRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTY 428

Query: 540 LNLIE 544
           + L++
Sbjct: 429 ITLLD 433


>gi|410110137|gb|AFV61148.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           rubella]
          Length = 440

 Score =  129 bits (325), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 91/295 (30%), Positives = 149/295 (50%), Gaps = 7/295 (2%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L +EM    +  D  TYST+IT   +  LFD A+ W ++M +  +  D V YS ++++  
Sbjct: 2   LFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSR 61

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           K     + +S++ R   SG+ PD +A++ +  +FG++  +   R ++ EMK+ GV PN  
Sbjct: 62  KLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTT 121

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            Y+TLL    +  K   A S+F EM E     D  T   +I +YG+   AK+A +L+  M
Sbjct: 122 SYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLSMAKEADKLFWGM 181

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
           R+       + +NTLL +  D  L  EA  LF  M+  +  +    +Y +M+ IYG    
Sbjct: 182 RKMGIEPSVVSFNTLLRVYGDAELFGEAIHLFRLMQRKN-IEQTVVTYNSMIMIYGKTLE 240

Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF------GVSIDR 497
            + A  L +EM   G+  N +  + +I   GK  ++D    +F      GV ID+
Sbjct: 241 HEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQ 295



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 82/367 (22%), Positives = 168/367 (45%), Gaps = 6/367 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K     P + + YN  +      + F+    L +EM +  +  +  +YS
Sbjct: 66  YSKAISIFSRLKRSGFTP-DLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYS 124

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY +    +E   L+      
Sbjct: 125 TLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLSMAKEADKLFWGMRKM 184

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P  ++F+ L +++G++  +    ++ + M+   ++  +V YN+++   GK  +   A
Sbjct: 185 GIEPSVVSFNTLLRVYGDAELFGEAIHLFRLMQRKNIEQTVVTYNSMIMIYGKTLEHEKA 244

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R +   +D IL+ T++  
Sbjct: 245 NNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVA 304

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K     +PDN      ++I    G ++ A  +F +  + G   
Sbjct: 305 YERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVK 359

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           ++     +I  L K ++  ++V VF      G  PD  +   +L+     +  +    V 
Sbjct: 360 DITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSNVIAVVLNAYGKLQEFDKANDVY 419

Query: 527 TCLQQAN 533
             +Q+  
Sbjct: 420 MEMQEVG 426



 Score = 69.7 bits (169), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 96/220 (43%), Gaps = 1/220 (0%)

Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYG 373
           +  EM+   + P+   Y+TL+   GK G    A S   +M +  +  D    + LI++  
Sbjct: 2   LFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSR 61

Query: 374 KARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDN 433
           K      A+ ++ R++ + +  D + YN ++N+     L  EA  L  +MK +    P+ 
Sbjct: 62  KLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAG-VMPNT 120

Query: 434 YSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGV 493
            SY+ +L +Y        A+ +F EM E+   +++  C  +I   G+     +  ++F  
Sbjct: 121 TSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLSMAKEADKLFWG 180

Query: 494 SIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN 533
               G++P       LL V    E   +   +   +Q+ N
Sbjct: 181 MRKMGIEPSVVSFNTLLRVYGDAELFGEAIHLFRLMQRKN 220


>gi|410110103|gb|AFV61131.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           alba]
          Length = 419

 Score =  129 bits (325), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 91/295 (30%), Positives = 151/295 (51%), Gaps = 7/295 (2%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L +EM    +  D  TYST+IT   +  LFD A+ W ++M +  +  D V YS ++++  
Sbjct: 2   LFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSR 61

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           K     + ++++ R   SG+ PD +A++ +  +FG++  +   R ++ EMK+ GV PN  
Sbjct: 62  KLCDYSKAIAIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKTAGVMPNTS 121

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            Y+TLL    +  K   A S+F EM E     D  T   +I +YG+   AK+A +L+  M
Sbjct: 122 SYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM 181

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
           R+     + + YNTLL +  D  L  EA  LF  M+  +  + +  +Y +M+ IYG    
Sbjct: 182 RKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKN-IEQNVVTYNSMMMIYGKTLE 240

Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF------GVSIDR 497
            + A  L +EM   G+  N +  + +I   GK  ++D    +F      GV ID+
Sbjct: 241 HEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQ 295



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/345 (23%), Positives = 164/345 (47%), Gaps = 6/345 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K     P + + YN  +      + F+    L  EM +  +  +  +YS
Sbjct: 66  YSKAIAIFSRLKRSGFTP-DLVAYNAMINVFGKAKLFREARSLIGEMKTAGVMPNTSSYS 124

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY + G  +E   L+      
Sbjct: 125 TLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 184

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   ++ N+V YN+++   GK  +   A
Sbjct: 185 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKA 244

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R +   +D IL+ T++  
Sbjct: 245 NNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVA 304

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K     +PDN      ++I    G ++ A  +F +  + G   
Sbjct: 305 YERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVK 359

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
           ++     +I  L K ++  ++V VF      G  PD  +   +L+
Sbjct: 360 DITVFERMIHLLSKYKKYXNVVEVFDKMRGLGYFPDSNVIAVVLN 404



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 127/268 (47%), Gaps = 1/268 (0%)

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
           F+ M +  L PD  TYS ++  + K G  +  LS  ++        D + +S L ++  +
Sbjct: 3   FDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRK 62

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
             DY     +   +K  G  P+LV YN ++   GKA     ARSL  EM  +G+ P+  +
Sbjct: 63  LCDYSKAIAIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKTAGVMPNTSS 122

Query: 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
            + L+ +Y + +   +AL ++  MRE K  +D    N ++++   +G+ +EA++LF  M+
Sbjct: 123 YSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR 182

Query: 425 LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484
                +P+  SY  +L +YG       AI LF  M    +  NV+    ++   GK    
Sbjct: 183 KMG-IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEH 241

Query: 485 DDLVRVFGVSIDRGVKPDDRLCGCLLSV 512
           +    +      RG++P+      ++S+
Sbjct: 242 EKANNLIQEMQSRGIEPNSITYSTIISI 269



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 97/220 (44%), Gaps = 1/220 (0%)

Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYG 373
           +  EM+   + P+   Y+TL+   GK G    A S   +M +  +  D    + LI++  
Sbjct: 2   LFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSR 61

Query: 374 KARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDN 433
           K      A+ ++ R++ + +  D + YN ++N+     L  EA  L  +MK +    P+ 
Sbjct: 62  KLCDYSKAIAIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKTAG-VMPNT 120

Query: 434 YSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGV 493
            SY+ +L +Y        A+ +F EM E+   +++  C  +I   G+     +  ++F  
Sbjct: 121 SSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWG 180

Query: 494 SIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN 533
               G++P+      LL V    E   +   +   +Q+ N
Sbjct: 181 MRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKN 220



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/228 (21%), Positives = 101/228 (44%), Gaps = 9/228 (3%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGR--QFQLI 206
           P+  +    L +    + + ++   F  ++ +N+     + YN  M  + +G+  + +  
Sbjct: 188 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNI-EQNVVTYNSMM--MIYGKTLEHEKA 244

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
             L  EM S  IE ++ITYSTII+   +    D A   F+++  +G+  D++ +  ++  
Sbjct: 245 NNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVA 304

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
           Y ++G V       +R +    +PD I       +   +G  +   YV ++    G   +
Sbjct: 305 YERAGLVAHA----KRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKD 360

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK 374
           + V+  ++  + K  K      +FD+M   G  PD   +  ++  YGK
Sbjct: 361 ITVFERMIHLLSKYKKYXNVVEVFDKMRGLGYFPDSNVIAVVLNAYGK 408


>gi|125526112|gb|EAY74226.1| hypothetical protein OsI_02107 [Oryza sativa Indica Group]
          Length = 540

 Score =  129 bits (325), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 98/369 (26%), Positives = 173/369 (46%), Gaps = 38/369 (10%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           FF W + Q  F      ++  +++L   +QF+L+  L   M      L   T+  I+   
Sbjct: 140 FFRWAERQQGFRYSAEGFHNLIEALGKIKQFRLVWSLVEAMRCRSC-LSKDTFKIIVRRY 198

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG-WKPD 291
            R     EA+E FE+M   GL  D   Y+ ++D+ +KS +V++  ++++     G + PD
Sbjct: 199 ARARKVKEAVETFEKMSSFGLKTDLSDYNWLIDILSKSKQVKKAHAIFKEMKRKGRFIPD 258

Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
              ++VL + +G   D   ++ V QEM   G++P++V Y  L+ A  K+GK   A  +F 
Sbjct: 259 LKTYTVLMEGWGHEKDLLMLKAVYQEMLDAGIKPDVVAYGMLISAFCKSGKCDEAIKVFH 318

Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMD--------------- 396
           EM ESG  P       LI   G      +AL+ ++  +E+ +PM+               
Sbjct: 319 EMEESGCMPSPHVYCMLINGLGSMERLDEALKYFQLSKESGFPMEVPTCNAVIGAYCRAL 378

Query: 397 -----FIL---------------YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY 436
                F +               Y+ +LN       +EEA  LF+ M+  D C+P+  +Y
Sbjct: 379 EFHHAFKMVDEMRKSGIGPNTRTYDIILNHLIKSEKIEEAYNLFQRME-RDGCEPELNTY 437

Query: 437 TAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496
           T M+ ++ S   VD A++++++M E GV   +   + LI  L    R+++    F   +D
Sbjct: 438 TMMVGMFCSNERVDMALKVWKQMKEKGVLPCMHMFSALINGLCFDNRLEEACVYFQEMLD 497

Query: 497 RGVKPDDRL 505
           +G++P  +L
Sbjct: 498 KGIRPPGQL 506



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 72/305 (23%), Positives = 144/305 (47%), Gaps = 5/305 (1%)

Query: 160 ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIE 219
           IL+  K  +K++  F  +K +  F  +   Y V M+     +   +++ +  EM+   I+
Sbjct: 232 ILSKSKQVKKAHAIFKEMKRKGRFIPDLKTYTVLMEGWGHEKDLLMLKAVYQEMLDAGIK 291

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
            D + Y  +I+   +    DEAI+ F  M ++G MP    Y  +++      +++E L  
Sbjct: 292 PDVVAYGMLISAFCKSGKCDEAIKVFHEMEESGCMPSPHVYCMLINGLGSMERLDEALKY 351

Query: 280 YERGVASGWKPD-PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMG 338
           ++    SG+  + P   +V+G  +  + ++     ++ EM+  G+ PN   Y+ +L  + 
Sbjct: 352 FQLSKESGFPMEVPTCNAVIGA-YCRALEFHHAFKMVDEMRKSGIGPNTRTYDIILNHLI 410

Query: 339 KAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFI 398
           K+ K   A +LF  M   G  P+  T T ++ ++        AL++W++M+E        
Sbjct: 411 KSEKIEEAYNLFQRMERDGCEPELNTYTMMVGMFCSNERVDMALKVWKQMKEKGVLPCMH 470

Query: 399 LYNTLLN-MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE 457
           +++ L+N +C D  L EEA   F++M L    +P    ++ +      GG +  A E+ +
Sbjct: 471 MFSALINGLCFDNRL-EEACVYFQEM-LDKGIRPPGQLFSNLKEALVEGGRITLAQEVTQ 528

Query: 458 EMSEL 462
            +  L
Sbjct: 529 RLEML 533



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 94/182 (51%), Gaps = 4/182 (2%)

Query: 330 YNTLLEAMGKAGKPGLARSLFDEM-VESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
           ++ L+EA+GK  +  L  SL + M   S L+ D  T   +++ Y +AR  K+A+E +E+M
Sbjct: 157 FHNLIEALGKIKQFRLVWSLVEAMRCRSCLSKD--TFKIIVRRYARARKVKEAVETFEKM 214

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
                  D   YN L+++ +    V++A  +F++MK      PD  +YT ++  +G   +
Sbjct: 215 SSFGLKTDLSDYNWLIDILSKSKQVKKAHAIFKEMKRKGRFIPDLKTYTVLMEGWGHEKD 274

Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGC 508
           +     +++EM + G+  +V+    LI    K+ + D+ ++VF    + G  P   +  C
Sbjct: 275 LLMLKAVYQEMLDAGIKPDVVAYGMLISAFCKSGKCDEAIKVFHEMEESGCMPSPHVY-C 333

Query: 509 LL 510
           +L
Sbjct: 334 ML 335



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/225 (21%), Positives = 97/225 (43%), Gaps = 9/225 (4%)

Query: 130 KLNDCDNTEEAFLRAITEIPHQPTRENALLILNSLKFWQK-----SYFFFNWIKSQNLFP 184
           K   CD   + F   + E    P+     +++N L   ++      YF    +  ++ FP
Sbjct: 306 KSGKCDEAIKVF-HEMEESGCMPSPHVYCMLINGLGSMERLDEALKYF---QLSKESGFP 361

Query: 185 METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEW 244
           ME    N  + +     +F    ++ +EM  + I  +  TY  I+    +    +EA   
Sbjct: 362 MEVPTCNAVIGAYCRALEFHHAFKMVDEMRKSGIGPNTRTYDIILNHLIKSEKIEEAYNL 421

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
           F+RM + G  P+  TY+ ++ ++  + +V+  L ++++    G  P    FS L      
Sbjct: 422 FQRMERDGCEPELNTYTMMVGMFCSNERVDMALKVWKQMKEKGVLPCMHMFSALINGLCF 481

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSL 349
               +      QEM   G++P   +++ L EA+ + G+  LA+ +
Sbjct: 482 DNRLEEACVYFQEMLDKGIRPPGQLFSNLKEALVEGGRITLAQEV 526


>gi|357144696|ref|XP_003573383.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g59040-like [Brachypodium distachyon]
          Length = 606

 Score =  129 bits (325), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 96/360 (26%), Positives = 173/360 (48%), Gaps = 11/360 (3%)

Query: 158 LLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGR--QFQLIEQLANEMVS 215
           L+    LK W        W+++Q+ +    +  +  M    +G+   F   E++   M  
Sbjct: 112 LVRFKQLKKWNLVSEILEWLRTQHWWDFSEM--DFLMLVTAYGKLGDFSRAERVLKYMNK 169

Query: 216 NEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEE 275
                  I+ + ++    R   + +A   F RM  +G  P  +TY  IL    +  K +E
Sbjct: 170 KGYRPTVISQTALMEAYGRAKQYRKAEAVFHRMQTSGPEPSPITYQIILKSLVEGDKYKE 229

Query: 276 VLSLYERGVASG---WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNT 332
             +++E  ++     +KPD   F ++  M+ +SGDY   R +  +M   G+  + V +N+
Sbjct: 230 AEAIFEDLLSEKRTFFKPDQKMFHMMIYMYKKSGDYAQARKLFAQMSERGIPQSTVTFNS 289

Query: 333 LLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENK 392
           L+   G   +     S++D+M  +GL PD  + + LIK YGKAR  ++A  ++E M +  
Sbjct: 290 LMSFEGDYKE---VSSIYDQMQRAGLKPDVVSYSLLIKAYGKARREEEASAVFEEMLDAG 346

Query: 393 WPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNA 452
                  YN LL+  A  GLVEEA+ +F+ M+     +PD  SYT ML  Y +  ++D A
Sbjct: 347 IRPTRKSYNILLDAFAISGLVEEAQTVFKTMR-RHRVEPDLCSYTTMLLAYVNASDMDGA 405

Query: 453 IELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSV 512
            + F  + E G+  NV+    L++   K   ++ ++RV+     +GV+P+  +   ++ V
Sbjct: 406 EKFFRRIKEDGLRPNVVVYGTLMKGYSKLDNVEKVMRVYERMRMQGVEPNQTIFTTIMDV 465



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 82/340 (24%), Positives = 172/340 (50%), Gaps = 12/340 (3%)

Query: 130 KLNDCDNTEEAFLRAITEIPHQPT--RENALL-ILNSLKFWQKSYFFFNWIKSQNLFPME 186
           KL D    E   L+ + +  ++PT   + AL+      K ++K+   F+ +++    P  
Sbjct: 153 KLGDFSRAERV-LKYMNKKGYRPTVISQTALMEAYGRAKQYRKAEAVFHRMQTSGPEP-S 210

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNE---IELDNITYSTIITCAKRCNLFDEAIE 243
            I Y + +KSL  G +++  E +  +++S +    + D   +  +I   K+   + +A +
Sbjct: 211 PITYQIILKSLVEGDKYKEAEAIFEDLLSEKRTFFKPDQKMFHMMIYMYKKSGDYAQARK 270

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
            F +M + G+    VT+++++      G  +EV S+Y++   +G KPD +++S+L K +G
Sbjct: 271 LFAQMSERGIPQSTVTFNSLMSF---EGDYKEVSSIYDQMQRAGLKPDVVSYSLLIKAYG 327

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
           ++   +    V +EM   G++P    YN LL+A   +G    A+++F  M    + PD  
Sbjct: 328 KARREEEASAVFEEMLDAGIRPTRKSYNILLDAFAISGLVEEAQTVFKTMRRHRVEPDLC 387

Query: 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
           + T ++  Y  A     A + + R++E+    + ++Y TL+   + +  VE+  R++E M
Sbjct: 388 SYTTMLLAYVNASDMDGAEKFFRRIKEDGLRPNVVVYGTLMKGYSKLDNVEKVMRVYERM 447

Query: 424 KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           ++    +P+   +T +++++G   +  NA+  F EM   G
Sbjct: 448 RMQG-VEPNQTIFTTIMDVHGRNSDFGNAVIWFNEMETRG 486



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 68/296 (22%), Positives = 134/296 (45%), Gaps = 13/296 (4%)

Query: 179 SQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLF 238
           S+   P  T+ +N  M    F   ++ +  + ++M    ++ D ++YS +I    +    
Sbjct: 276 SERGIPQSTVTFNSLMS---FEGDYKEVSSIYDQMQRAGLKPDVVSYSLLIKAYGKARRE 332

Query: 239 DEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
           +EA   FE M   G+ P   +Y+ +LD +A SG VEE  ++++       +PD  +++ +
Sbjct: 333 EEASAVFEEMLDAGIRPTRKSYNILLDAFAISGLVEEAQTVFKTMRRHRVEPDLCSYTTM 392

Query: 299 GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
              +  + D DG     + +K  G++PN+VVY TL++   K         +++ M   G+
Sbjct: 393 LLAYVNASDMDGAEKFFRRIKEDGLRPNVVVYGTLMKGYSKLDNVEKVMRVYERMRMQGV 452

Query: 359 TPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAER 418
            P++   T ++ ++G+     +A+  +  M    +P D    N LL++       +EA  
Sbjct: 453 EPNQTIFTTIMDVHGRNSDFGNAVIWFNEMETRGYPPDKKAKNILLSLAKTPEEQQEANE 512

Query: 419 LFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG-CTC 473
           L  +  +    KP   +         SG + D A E     ++ G  +++ G CT 
Sbjct: 513 LTGNGAIQLEVKPSGMT---------SGLDKDGADEHEGGRTDAGHHVSLNGACTA 559



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 133/284 (46%), Gaps = 13/284 (4%)

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
           W    + F +L   +G+ GD+     VL+ M   G +P ++    L+EA G+A +   A 
Sbjct: 137 WDFSEMDFLMLVTAYGKLGDFSRAERVLKYMNKKGYRPTVISQTALMEAYGRAKQYRKAE 196

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENK---WPMDFILYNTLL 404
           ++F  M  SG  P   T   ++K   +    K+A  ++E +   K   +  D  +++ ++
Sbjct: 197 AVFHRMQTSGPEPSPITYQIILKSLVEGDKYKEAEAIFEDLLSEKRTFFKPDQKMFHMMI 256

Query: 405 NMCADIGLVEEAERLFEDMKLSDYCKPDN-YSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
            M    G   +A +LF  M  S+   P +  ++ ++++  G    V +   ++++M   G
Sbjct: 257 YMYKKSGDYAQARKLFAQM--SERGIPQSTVTFNSLMSFEGDYKEVSS---IYDQMQRAG 311

Query: 464 VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVG 523
           +  +V+  + LI+  GKARR ++   VF   +D G++P  +    LL   ++    E+  
Sbjct: 312 LKPDVVSYSLLIKAYGKARREEEASAVFEEMLDAGIRPTRKSYNILLDAFAISGLVEEAQ 371

Query: 524 KVITCL--QQANPKLVAFLNLIED--NSTGFENIKEEFRNVIKD 563
            V   +   +  P L ++  ++    N++  +  ++ FR + +D
Sbjct: 372 TVFKTMRRHRVEPDLCSYTTMLLAYVNASDMDGAEKFFRRIKED 415


>gi|357142290|ref|XP_003572522.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 669

 Score =  129 bits (325), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 89/318 (27%), Positives = 150/318 (47%), Gaps = 37/318 (11%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
            N I S  + P +T  YN  +K L   +Q++  E+L  EM+ N    + +T++T I    
Sbjct: 198 LNLIASMPVAP-DTYTYNTVLKGLCGAKQWEKAEELMEEMIRNNCHPNEVTFATQIRSFC 256

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYE------------ 281
           +  L D A++  ERM + G  PD V YS +++ +++ G+V++ L L              
Sbjct: 257 QNGLLDHAVQLLERMPRYGCTPDVVIYSTLVNGFSEQGRVDDALVLLNTMLCKPNTVCYN 316

Query: 282 ---RG--VASGWK---------------PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
              +G  +A  WK               P+   FS+L     + G  D    V+++M+  
Sbjct: 317 AALKGLCMAERWKDVGELIAEMVRKDCPPNEATFSMLTSCLCQHGLVDCAMEVVEQMQKY 376

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
           G +P++V+YNTL+    + G+   A  L D M+     PD  +  A +K   +     D 
Sbjct: 377 GCRPDVVIYNTLINYFSEQGRVDDALMLLDSML---CNPDTISFNAALKALCRTERWYDV 433

Query: 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
            EL  +M     P+  + +N L++     GLV  A  +FE M     C PD  +Y++++N
Sbjct: 434 EELIAQMLREDCPLIEMTFNILIDSLCQHGLVNHAIEVFEQMP-KYRCTPDIVTYSSLIN 492

Query: 442 IYGSGGNVDNAIELFEEM 459
            +   G V++AIELF+ M
Sbjct: 493 GFSEQGLVESAIELFQSM 510



 Score = 77.0 bits (188), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 117/274 (42%), Gaps = 10/274 (3%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + YN  +       +      L + M+ N    D I+++  +    R   + +  E  
Sbjct: 381 DVVIYNTLINYFSEQGRVDDALMLLDSMLCNP---DTISFNAALKALCRTERWYDVEELI 437

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
            +M +      E+T++ ++D   + G V   + ++E+       PD + +S L   F E 
Sbjct: 438 AQMLREDCPLIEMTFNILIDSLCQHGLVNHAIEVFEQMPKYRCTPDIVTYSSLINGFSEQ 497

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G    +   ++  +S+  +P++  YN +L+ + +A +   A  L   M      P+E T 
Sbjct: 498 G---LVESAIELFQSMPCKPDIFSYNAVLKGLCRAARWEDAGELIANMARKDCPPNEITF 554

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
             LI    +  +A  A+E++++M E     D   YN L+N  ++ G +++A  L   M  
Sbjct: 555 NILINSLCQKGFADRAIEVFKQMPEYGSTPDIFTYNALINGFSEQGRLDDALNLLSTMS- 613

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
              CKPD  SY + L           A E+  EM
Sbjct: 614 ---CKPDAISYNSTLKGLCRAERWKEAEEIVAEM 644



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 108/247 (43%), Gaps = 8/247 (3%)

Query: 256 DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVL 315
           D V+++ ++  Y + G++ +   + E    SG   + + ++ L   +  SG    +   L
Sbjct: 143 DAVSHNTLVAGYCRDGRLADAERVLEAAKVSG-AANVVTYTALINGYCRSGR---LADAL 198

Query: 316 QEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA 375
             + S+ V P+   YNT+L+ +  A +   A  L +EM+ +   P+E T    I+ + + 
Sbjct: 199 NLIASMPVAPDTYTYNTVLKGLCGAKQWEKAEELMEEMIRNNCHPNEVTFATQIRSFCQN 258

Query: 376 RWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYS 435
                A++L ERM       D ++Y+TL+N  ++ G V++A  L   M     CKP+   
Sbjct: 259 GLLDHAVQLLERMPRYGCTPDVVIYSTLVNGFSEQGRVDDALVLLNTM----LCKPNTVC 314

Query: 436 YTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSI 495
           Y A L          +  EL  EM       N    + L  CL +   +D  + V     
Sbjct: 315 YNAALKGLCMAERWKDVGELIAEMVRKDCPPNEATFSMLTSCLCQHGLVDCAMEVVEQMQ 374

Query: 496 DRGVKPD 502
             G +PD
Sbjct: 375 KYGCRPD 381



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/175 (22%), Positives = 79/175 (45%), Gaps = 4/175 (2%)

Query: 192 VTMKSLRFGRQFQ-LIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYK 250
           VT  SL  G   Q L+E       S   + D  +Y+ ++    R   +++A E    M +
Sbjct: 485 VTYSSLINGFSEQGLVESAIELFQSMPCKPDIFSYNAVLKGLCRAARWEDAGELIANMAR 544

Query: 251 TGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDG 310
               P+E+T++ +++   + G  +  + ++++    G  PD   ++ L   F E G  D 
Sbjct: 545 KDCPPNEITFNILINSLCQKGFADRAIEVFKQMPEYGSTPDIFTYNALINGFSEQGRLDD 604

Query: 311 IRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
               L  + ++  +P+ + YN+ L+ + +A +   A  +  EM+     P+E T 
Sbjct: 605 ---ALNLLSTMSCKPDAISYNSTLKGLCRAERWKEAEEIVAEMLRKKCPPNEVTF 656



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 68/141 (48%), Gaps = 3/141 (2%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN  +K L    +++   +L   M   +   + IT++ +I    +    D AIE F++M 
Sbjct: 519 YNAVLKGLCRAARWEDAGELIANMARKDCPPNEITFNILINSLCQKGFADRAIEVFKQMP 578

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
           + G  PD  TY+A+++ +++ G++++ L+L         KPD I+++   K    +  + 
Sbjct: 579 EYGSTPDIFTYNALINGFSEQGRLDDALNLLS---TMSCKPDAISYNSTLKGLCRAERWK 635

Query: 310 GIRYVLQEMKSLGVQPNLVVY 330
               ++ EM      PN V +
Sbjct: 636 EAEEIVAEMLRKKCPPNEVTF 656


>gi|297797161|ref|XP_002866465.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312300|gb|EFH42724.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 977

 Score =  129 bits (325), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 106/411 (25%), Positives = 193/411 (46%), Gaps = 15/411 (3%)

Query: 145 ITEIPHQPTRENALLILNSLK-FWQKSYF-----FFNWIKSQNLFPMETIFYNVTMKSLR 198
           + E+     R N ++    +K F QKS F         ++ Q + P +T  YN  +  L 
Sbjct: 443 VKEMGASGCRPNVVIYTTLIKTFLQKSRFGDAVRVLKEMREQGIAP-DTFCYNSLIIGLS 501

Query: 199 FGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEV 258
             ++         EMV N  + D  TY   I+       F  A ++ + M + G++P++V
Sbjct: 502 KAKKMDEARSFLLEMVENGFKPDAFTYGAFISGYIEAGEFASADKYVKEMLECGVIPNKV 561

Query: 259 TYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEM 318
             + +++ Y K GKV E  S +   V  G   D   ++VL     ++G  +    +  EM
Sbjct: 562 LCTGLINEYCKKGKVIEACSAFRSMVEQGILGDAKTYTVLMNGLVKNGKVNDAEEIFHEM 621

Query: 319 KSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWA 378
           +  G+ P++  Y TL++   K G    A S+FDEMV++GLT +      L+  + ++   
Sbjct: 622 RGKGIAPDVFSYGTLIDGFSKLGNMQKASSIFDEMVQAGLTSNVIIYNMLLGGFCRSGEI 681

Query: 379 KDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTA 438
           + A EL + M    +P + + Y T+++     G + EA +LF++MKL     PD++ YT 
Sbjct: 682 EKAKELLDEMSGKGFPPNAVTYCTIIDGYCKSGDLAEAFQLFDEMKLKGLV-PDSFVYTT 740

Query: 439 MLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL---GKARRIDDLV-RVFGVS 494
           +++      +V+ AI +FE  +E G A +      LI  +   GK     D++ R+   S
Sbjct: 741 LVDGCCRLNDVERAITIFET-NEKGCASSSAPFNALINWVFKFGKTELTTDMINRLMDGS 799

Query: 495 IDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAFLNLI 543
            D+  KP+D     ++  +      E   ++   +Q+AN  P ++ + +L+
Sbjct: 800 FDKFGKPNDVTYNIMIDYLCKEGNLEAAKELFHHMQKANLMPTVITYTSLL 850



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 90/363 (24%), Positives = 164/363 (45%), Gaps = 5/363 (1%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           +K Y     IK +N+  +    Y   +K +           +  EM ++    + + Y+T
Sbjct: 402 RKGYELLVEIKKRNIV-ISPYTYGTAVKGMCSSGDLDGAYNIVKEMGASGCRPNVVIYTT 460

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           +I    + + F +A+   + M + G+ PD   Y++++   +K+ K++E  S     V +G
Sbjct: 461 LIKTFLQKSRFGDAVRVLKEMREQGIAPDTFCYNSLIIGLSKAKKMDEARSFLLEMVENG 520

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
           +KPD   +      + E+G++      ++EM   GV PN V+   L+    K GK   A 
Sbjct: 521 FKPDAFTYGAFISGYIEAGEFASADKYVKEMLECGVIPNKVLCTGLINEYCKKGKVIEAC 580

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
           S F  MVE G+  D KT T L+    K     DA E++  MR      D   Y TL++  
Sbjct: 581 SAFRSMVEQGILGDAKTYTVLMNGLVKNGKVNDAEEIFHEMRGKGIAPDVFSYGTLIDGF 640

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
           + +G +++A  +F++M +      +   Y  +L  +   G ++ A EL +EMS  G   N
Sbjct: 641 SKLGNMQKASSIFDEM-VQAGLTSNVIIYNMLLGGFCRSGEIEKAKELLDEMSGKGFPPN 699

Query: 468 VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVIT 527
            +    +I    K+  + +  ++F     +G+ PD  +     ++V  C    DV + IT
Sbjct: 700 AVTYCTIIDGYCKSGDLAEAFQLFDEMKLKGLVPDSFV---YTTLVDGCCRLNDVERAIT 756

Query: 528 CLQ 530
             +
Sbjct: 757 IFE 759



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 154/354 (43%), Gaps = 5/354 (1%)

Query: 152 PTRENALLILNSL---KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           P+R++  L+++ L   K  + +      + S  LF  + + Y++ +  L  GR       
Sbjct: 278 PSRQSYNLLIDGLCKQKRLEDAKSLLVEMNSVGLFA-DNVAYSILIDGLLKGRNADAANG 336

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L +EMVS+   +D + Y   I    +    ++A   F+ M   G+ P    Y+++++ + 
Sbjct: 337 LVHEMVSHGFSIDPMMYDYFICVMSKEGAMEKAKALFDGMITFGVTPGARAYASLIEGFF 396

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           +   V +   L            P  +    K    SGD DG   +++EM + G +PN+V
Sbjct: 397 REKNVRKGYELLVEIKKRNIVISPYTYGTAVKGMCSSGDLDGAYNIVKEMGASGCRPNVV 456

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
           +Y TL++   +  + G A  +  EM E G+ PD     +LI    KA+   +A      M
Sbjct: 457 IYTTLIKTFLQKSRFGDAVRVLKEMREQGIAPDTFCYNSLIIGLSKAKKMDEARSFLLEM 516

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
            EN +  D   Y   ++   + G    A++  ++M L     P+    T ++N Y   G 
Sbjct: 517 VENGFKPDAFTYGAFISGYIEAGEFASADKYVKEM-LECGVIPNKVLCTGLINEYCKKGK 575

Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           V  A   F  M E G+  +    T L+  L K  +++D   +F     +G+ PD
Sbjct: 576 VIEACSAFRSMVEQGILGDAKTYTVLMNGLVKNGKVNDAEEIFHEMRGKGIAPD 629



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 130/273 (47%), Gaps = 1/273 (0%)

Query: 239 DEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
           DEA+E  + M   GL+P   +Y+ ++D   K  ++E+  SL     + G   D +A+S+L
Sbjct: 262 DEALELKKSMSCKGLVPSRQSYNLLIDGLCKQKRLEDAKSLLVEMNSVGLFADNVAYSIL 321

Query: 299 GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
                +  + D    ++ EM S G   + ++Y+  +  M K G    A++LFD M+  G+
Sbjct: 322 IDGLLKGRNADAANGLVHEMVSHGFSIDPMMYDYFICVMSKEGAMEKAKALFDGMITFGV 381

Query: 359 TPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAER 418
           TP  +   +LI+ + + +  +   EL   +++    +    Y T +      G ++ A  
Sbjct: 382 TPGARAYASLIEGFFREKNVRKGYELLVEIKKRNIVISPYTYGTAVKGMCSSGDLDGAYN 441

Query: 419 LFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL 478
           + ++M  S  C+P+   YT ++  +       +A+ + +EM E G+A +      LI  L
Sbjct: 442 IVKEMGASG-CRPNVVIYTTLIKTFLQKSRFGDAVRVLKEMREQGIAPDTFCYNSLIIGL 500

Query: 479 GKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
            KA+++D+        ++ G KPD    G  +S
Sbjct: 501 SKAKKMDEARSFLLEMVENGFKPDAFTYGAFIS 533



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/298 (21%), Positives = 126/298 (42%), Gaps = 44/298 (14%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
            I YN+ +       + +  ++L +EM       + +TY TII    +     EA + F+
Sbjct: 665 VIIYNMLLGGFCRSGEIEKAKELLDEMSGKGFPPNAVTYCTIIDGYCKSGDLAEAFQLFD 724

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYE---RGVASG---------W------ 288
            M   GL+PD   Y+ ++D   +   VE  ++++E   +G AS          W      
Sbjct: 725 EMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFETNEKGCASSSAPFNALINWVFKFGK 784

Query: 289 --------------------KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
                               KP+ + ++++     + G+ +  + +   M+   + P ++
Sbjct: 785 TELTTDMINRLMDGSFDKFGKPNDVTYNIMIDYLCKEGNLEAAKELFHHMQKANLMPTVI 844

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            Y +LL    K G+     S+FDE++ +G+ PD    + +I  + K      AL L ++M
Sbjct: 845 TYTSLLNGYDKMGRRSEMFSVFDEVIAAGIEPDNIMYSVIINAFLKEGMTTKALVLLDQM 904

Query: 389 -----RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
                 ++   +       LL+  A +G +E AE++ E+M    Y  PD+ +   ++N
Sbjct: 905 FAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVVENMVRLKYI-PDSSTVIELIN 961



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 128/316 (40%), Gaps = 36/316 (11%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           +Y+ +I    +    ++A      M   GL  D V YS ++D   K    +    L    
Sbjct: 282 SYNLLIDGLCKQKRLEDAKSLLVEMNSVGLFADNVAYSILIDGLLKGRNADAANGLVHEM 341

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP------------------ 325
           V+ G+  DP+ +     +  + G  +  + +   M + GV P                  
Sbjct: 342 VSHGFSIDPMMYDYFICVMSKEGAMEKAKALFDGMITFGVTPGARAYASLIEGFFREKNV 401

Query: 326 -------------NLVV----YNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
                        N+V+    Y T ++ M  +G    A ++  EM  SG  P+    T L
Sbjct: 402 RKGYELLVEIKKRNIVISPYTYGTAVKGMCSSGDLDGAYNIVKEMGASGCRPNVVIYTTL 461

Query: 369 IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428
           IK + +     DA+ + + MRE     D   YN+L+   +    ++EA     +M  + +
Sbjct: 462 IKTFLQKSRFGDAVRVLKEMREQGIAPDTFCYNSLIIGLSKAKKMDEARSFLLEMVENGF 521

Query: 429 CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLV 488
            KPD ++Y A ++ Y   G   +A +  +EM E GV  N + CT LI    K  ++ +  
Sbjct: 522 -KPDAFTYGAFISGYIEAGEFASADKYVKEMLECGVIPNKVLCTGLINEYCKKGKVIEAC 580

Query: 489 RVFGVSIDRGVKPDDR 504
             F   +++G+  D +
Sbjct: 581 SAFRSMVEQGILGDAK 596



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 93/197 (47%), Gaps = 13/197 (6%)

Query: 197 LRFGRQFQLIEQLANEMVSNEIEL----DNITYSTIITCAKRCNLFDEAIEWFERMYKTG 252
            +FG+  +L   + N ++    +     +++TY+ +I    +    + A E F  M K  
Sbjct: 780 FKFGKT-ELTTDMINRLMDGSFDKFGKPNDVTYNIMIDYLCKEGNLEAAKELFHHMQKAN 838

Query: 253 LMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIR 312
           LMP  +TY+++L+ Y K G+  E+ S+++  +A+G +PD I +SV+   F + G      
Sbjct: 839 LMPTVITYTSLLNGYDKMGRRSEMFSVFDEVIAAGIEPDNIMYSVIINAFLKEGMTTKAL 898

Query: 313 YVLQEMKSL-----GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
            +L +M +      G + ++     LL    K G+  +A  + + MV     PD  T+  
Sbjct: 899 VLLDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVVENMVRLKYIPDSSTVIE 958

Query: 368 LIK---IYGKARWAKDA 381
           LI    I    R A DA
Sbjct: 959 LINESCISSNQRMAADA 975



 Score = 44.3 bits (103), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 95/239 (39%), Gaps = 24/239 (10%)

Query: 295 FSVLGKMFGESGDYDGIRYVLQEMKSLGVQ--PNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           F +L   + E G  D   +V    K L +   P+L   N LL+A+ K  +  L   ++  
Sbjct: 155 FGILIDGYIEKGFLDEAVFVFSSTKDLDLDLVPSLARCNHLLDALLKRNRLDLFWDVYKG 214

Query: 353 MVESGLTPDEKTLTALIKIY---GKARWAKD------------------ALELWERMREN 391
           MVE  +  D ++   LI  +   G  + AKD                  ALEL + M   
Sbjct: 215 MVERNVVFDVQSYEMLIGAHCRDGNVQLAKDVLLKTEEELGTATLNVDEALELKKSMSCK 274

Query: 392 KWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDN 451
                   YN L++       +E+A+ L  +M  S     DN +Y+ +++    G N D 
Sbjct: 275 GLVPSRQSYNLLIDGLCKQKRLEDAKSLLVEMN-SVGLFADNVAYSILIDGLLKGRNADA 333

Query: 452 AIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
           A  L  EM   G +I+ M     I  + K   ++    +F   I  GV P  R    L+
Sbjct: 334 ANGLVHEMVSHGFSIDPMMYDYFICVMSKEGAMEKAKALFDGMITFGVTPGARAYASLI 392


>gi|147778634|emb|CAN76112.1| hypothetical protein VITISV_005527 [Vitis vinifera]
          Length = 1494

 Score =  129 bits (325), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 89/300 (29%), Positives = 149/300 (49%), Gaps = 9/300 (3%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           +L NE+  + I+ D ITY+T+I+   R +  +EA++ +  M      PD  TY+A++ VY
Sbjct: 312 ELLNEVRRSGIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVY 371

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            + G   E   L++   + G+ PD + ++ L   F   G+ D ++ + ++M  +G   + 
Sbjct: 372 GRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDE 431

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
           + YNT++   GK G+  LA  L+ +M  SG +PD  T T LI   GKA   K+A E+   
Sbjct: 432 MTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSE 491

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           M           ++ L+   A  G   EAE  F+ M L    KPD+ +Y+ ML+I     
Sbjct: 492 MLNAXVKPTLRTFSALICGYAKAGKRVEAEETFDCM-LRSGIKPDHLAYSVMLDILLRFN 550

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCG 507
               A++L++EM       +      +++ LGK  R +D+ +V        VK  + LCG
Sbjct: 551 ESGKAMKLYQEMVLHSFKPDHALYEVMLRVLGKENREEDVHKV--------VKDMEELCG 602



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 85/327 (25%), Positives = 164/327 (50%), Gaps = 4/327 (1%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
             N ++   + P + I YN  + +       +   ++ N+MV++  + D  TY+ +I+  
Sbjct: 313 LLNEVRRSGIQP-DIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVY 371

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            RC +  EA   F+ +   G +PD VTY+++L  +A+ G V++V  + E  V  G+  D 
Sbjct: 372 GRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDE 431

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           + ++ +  M+G+ G +D    +  +MK  G  P+ V Y  L++++GKA     A  +  E
Sbjct: 432 MTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSE 491

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M+ + + P  +T +ALI  Y KA    +A E ++ M  +    D + Y+ +L++      
Sbjct: 492 MLNAXVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRFNE 551

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
             +A +L+++M L  + KPD+  Y  ML + G     ++  ++ ++M EL    + + C+
Sbjct: 552 SGKAMKLYQEMVLHSF-KPDHALYEVMLRVLGKENREEDVHKVVKDMEELCGMNSQVICS 610

Query: 473 CLI--QCLGKARRIDDLVRVFGVSIDR 497
            L+  +C   A  +  L    G  +DR
Sbjct: 611 ILVKGECFDHAANMLRLAISQGCELDR 637



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 80/344 (23%), Positives = 163/344 (47%), Gaps = 3/344 (0%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLF--DEAIEWFER 247
           YN  M       +F  +++L + M S   E D ++++T+I    +      + AIE    
Sbjct: 257 YNAMMGVYARTGRFTKVQELLDLMRSRGCEPDLVSFNTLINARLKSGTMVTNLAIELLNE 316

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           + ++G+ PD +TY+ ++   ++   +EE + +Y   VA   +PD   ++ +  ++G  G 
Sbjct: 317 VRRSGIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGM 376

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
                 + ++++S G  P+ V YN+LL A  + G     + + ++MV+ G   DE T   
Sbjct: 377 SREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNT 436

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           +I +YGK      A +L+  M+ +    D + Y  L++      +++EA  +  +M L+ 
Sbjct: 437 IIHMYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEM-LNA 495

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
             KP   +++A++  Y   G    A E F+ M   G+  + +  + ++  L +       
Sbjct: 496 XVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRFNESGKA 555

Query: 488 VRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ 531
           ++++   +    KPD  L   +L V+      EDV KV+  +++
Sbjct: 556 MKLYQEMVLHSFKPDHALYEVMLRVLGKENREEDVHKVVKDMEE 599



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 148/289 (51%), Gaps = 9/289 (3%)

Query: 226 STIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVA 285
           +TI++   + N    A+E F R         +V Y+A++ VYA++G+  +V  L +   +
Sbjct: 224 ATILSVLGKANQEALAVEIFARAEAAXGNTVQV-YNAMMGVYARTGRFTKVQELLDLMRS 282

Query: 286 SGWKPDPIAFSVLGKMFGESGDY--DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
            G +PD ++F+ L     +SG    +    +L E++  G+QP+++ YNTL+ A  +    
Sbjct: 283 RGCEPDLVSFNTLINARLKSGTMVTNLAIELLNEVRRSGIQPDIITYNTLISACSRESNL 342

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
             A  ++++MV     PD  T  A+I +YG+   +++A  L++ +    +  D + YN+L
Sbjct: 343 EEAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSREAGRLFKDLESKGFLPDAVTYNSL 402

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           L   A  G V++ + + EDM    + K D  +Y  ++++YG  G  D A +L+ +M   G
Sbjct: 403 LYAFAREGNVDKVKEICEDMVKMGFGK-DEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSG 461

Query: 464 VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR-----LCG 507
            + + +  T LI  LGKA  I +   V    ++  VKP  R     +CG
Sbjct: 462 RSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNAXVKPTLRTFSALICG 510



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 103/493 (20%), Positives = 204/493 (41%), Gaps = 27/493 (5%)

Query: 232  AKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291
            A   N+F E  + ++ M   G  P    Y  ++ + AK  +V +V ++      + +KPD
Sbjct: 895  AHAGNIF-EVKKIYQGMKAAGYFPTMHLYRIMIGLLAKGKRVRDVEAMVSEMEVAXFKPD 953

Query: 292  PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
               ++ + K++   GD+     V Q ++  G++P+   YNTL+    +  +P    SL  
Sbjct: 954  LSIWNSVLKLYTGIGDFKKTGQVYQLIQEAGLKPDEDTYNTLILMYCRDRRPEEGLSLMH 1013

Query: 352  EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411
            EM   GL P   T  +LI  +GK +  + A EL+E +   +  +D   Y+ ++ M  + G
Sbjct: 1014 EMRRVGLEPKLDTYKSLISAFGKLQMVEQAEELFEGLLSKECKLDRSFYHIMMKMFRNSG 1073

Query: 412  LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC 471
               +AE+L   MK +   +P   +   ++  Y   G  + A ++ + +   G+ ++ +  
Sbjct: 1074 NHSKAEKLLGVMKEAG-VEPTIATMHLLMVSYSGSGQPEEAEKVLDNLKVEGLPLSTLPY 1132

Query: 472  TCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ 531
            + +I    K    +  ++        G++PD R+  C +   SL + + +   ++  L+ 
Sbjct: 1133 SSVIDAYLKNGDHNVAIQKLMEMKKDGLEPDHRIWTCFVRAASLSQHTSEAIVLLKALRD 1192

Query: 532  ANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHE 591
                L   + L+ + S    +  +     +   E +A   F N L D+     L   A  
Sbjct: 1193 TGFDLP--IRLLTEKSDSLVSEVDNCLEKLGPLEDNAAFNFVNALEDLLWAFELRATASW 1250

Query: 592  LLYLGTLYGLY-PGLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAK-------IVLRE 643
            +  L     +Y   +      +W  D R +S G+A   L  W+  +         + L E
Sbjct: 1251 VFQLAVKRSIYRHDVFRVAEKDWGADFRKMSAGSALVGLTLWLDHMQASFLITIFVQLME 1310

Query: 644  EVL--------------PQLFLAETGTGTHKFSQGLATAFASHVNKLAAPFRQSEGKAGC 689
            E                P+  +  TGT  +     L +   + + ++ +PF   + ++G 
Sbjct: 1311 EYFYFWQDASLQGYPLSPKSVVLITGTAEYNMVS-LNSTLKAFLWEMGSPFLPCKTRSGL 1369

Query: 690  FVATREDLVSWVQ 702
             VA    L  W++
Sbjct: 1370 LVAKAHSLRMWLK 1382



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/330 (23%), Positives = 146/330 (44%), Gaps = 34/330 (10%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + Y V + SL      +   ++ +EM++  ++    T+S +I    +     EA E F
Sbjct: 465 DAVTYTVLIDSLGKANMIKEAAEVMSEMLNAXVKPTLRTFSALICGYAKAGKRVEAEETF 524

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           + M ++G+ PD + YS +LD+  +  +  + + LY+  V   +KPD   + V+ ++ G+ 
Sbjct: 525 DCMLRSGIKPDHLAYSVMLDILLRFNESGKAMKLYQEMVLHSFKPDHALYEVMLRVLGKE 584

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTL-------------------------------L 334
              + +  V+++M+ L    + V+ + L                               L
Sbjct: 585 NREEDVHKVVKDMEELCGMNSQVICSILVKGECFDHAANMLRLAISQGCELDRENLLSIL 644

Query: 335 EAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE-NKW 393
            + G +G+   AR L D + E      +    ALI +  KA    DAL  + + R+   +
Sbjct: 645 GSYGSSGRHLEARELLDFLREHSSGSHQLINEALIIMLCKAHQLGDALREYGKARDFGLF 704

Query: 394 PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAI 453
              F +Y +LL  C +  L  EA ++F DM+     +P ++ Y +M+  Y   G  + A 
Sbjct: 705 CGSFTMYESLLLCCEENELFAEASQIFSDMRFYG-VEPSDHLYRSMVVTYCKMGFPETAH 763

Query: 454 ELFEEMSELGVAI-NVMGCTCLIQCLGKAR 482
            L ++  E G+   +V   T +I+  GK +
Sbjct: 764 YLIDQAEEKGLLFDDVSIHTGVIEAYGKLK 793



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 68/298 (22%), Positives = 134/298 (44%), Gaps = 9/298 (3%)

Query: 314  VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL-TALIKIY 372
            +  +M+  GV+P+  +Y +++    K G P  A  L D+  E GL  D+ ++ T +I+ Y
Sbjct: 730  IFSDMRFYGVEPSDHLYRSMVVTYCKMGFPETAHYLIDQAEEKGLLFDDVSIHTGVIEAY 789

Query: 373  GKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPD 432
            GK +  + A  L   +R+    +D  ++N L++  A  G  E A  +F  M + D   P 
Sbjct: 790  GKLKLWQKAESLVGSLRQKCTMVDRKVWNALIHAYAASGCYERARAIFNTM-MRDGPSPT 848

Query: 433  NYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFG 492
              S   ++      G +D    + +E+ ++G  I+    T ++     A  I ++ +++ 
Sbjct: 849  VDSVNGLMQALIVDGRLDELYVVIQELQDMGFKISKSSITLMLDAFAHAGNIFEVKKIYQ 908

Query: 493  VSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQA--NPKLVAFLNLIEDNSTGF 550
                 G  P   L   ++ +++  +   DV  +++ ++ A   P L +  N +    TG 
Sbjct: 909  GMKAAGYFPTMHLYRIMIGLLAKGKRVRDVEAMVSEMEVAXFKPDL-SIWNSVLKLYTGI 967

Query: 551  ENIKE--EFRNVIKDTEVDARRPFCNCLIDI-CRNRNLNERAHELLYLGTLYGLYPGL 605
             + K+  +   +I++  +       N LI + CR+R   E    L++     GL P L
Sbjct: 968  GDFKKTGQVYQLIQEAGLKPDEDTYNTLILMYCRDRR-PEEGLSLMHEMRRVGLEPKL 1024



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 82/175 (46%), Gaps = 7/175 (4%)

Query: 200  GRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVT 259
            G+ +QLI++         ++ D  TY+T+I    R    +E +     M + GL P   T
Sbjct: 974  GQVYQLIQEAG-------LKPDEDTYNTLILMYCRDRRPEEGLSLMHEMRRVGLEPKLDT 1026

Query: 260  YSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMK 319
            Y +++  + K   VE+   L+E  ++   K D   + ++ KMF  SG++     +L  MK
Sbjct: 1027 YKSLISAFGKLQMVEQAEELFEGLLSKECKLDRSFYHIMMKMFRNSGNHSKAEKLLGVMK 1086

Query: 320  SLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK 374
              GV+P +   + L+ +   +G+P  A  + D +   GL       +++I  Y K
Sbjct: 1087 EAGVEPTIATMHLLMVSYSGSGQPEEAEKVLDNLKVEGLPLSTLPYSSVIDAYLK 1141



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 88/215 (40%), Gaps = 37/215 (17%)

Query: 325 PNLVVYNTLLEAMGKAGKPGLARSLF---------------------------------- 350
           PN  +  T+L  +GKA +  LA  +F                                  
Sbjct: 218 PNARMLATILSVLGKANQEALAVEIFARAEAAXGNTVQVYNAMMGVYARTGRFTKVQELL 277

Query: 351 DEMVESGLTPDEKTLTALI--KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCA 408
           D M   G  PD  +   LI  ++         A+EL   +R +    D I YNTL++ C+
Sbjct: 278 DLMRSRGCEPDLVSFNTLINARLKSGTMVTNLAIELLNEVRRSGIQPDIITYNTLISACS 337

Query: 409 DIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINV 468
               +EEA +++ DM ++  C+PD ++Y AM+++YG  G    A  LF+++   G   + 
Sbjct: 338 RESNLEEAVKVYNDM-VAHRCQPDLWTYNAMISVYGRCGMSREAGRLFKDLESKGFLPDA 396

Query: 469 MGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
           +    L+    +   +D +  +    +  G   D+
Sbjct: 397 VTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDE 431


>gi|224157081|ref|XP_002337799.1| predicted protein [Populus trichocarpa]
 gi|222869732|gb|EEF06863.1| predicted protein [Populus trichocarpa]
          Length = 367

 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 93/339 (27%), Positives = 173/339 (51%), Gaps = 10/339 (2%)

Query: 168 QKSYFFFNWIKSQNLFPMETIF-YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           ++++   N +  + L P  ++F YN  +  L    ++   + +  EM++  +  D  TY+
Sbjct: 18  EEAFEIMNSMADKGLKP--SLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYN 75

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++  + R + F EA E F  M + G++PD V++S+++ V++++  +++ L  +      
Sbjct: 76  TLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLMAVFSRNRHLDQALVYFRDMKKF 135

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G  PD + ++VL   +  +G+      +  EM   G   +++ YNT+L  + K      A
Sbjct: 136 GLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDA 195

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
             LFDEMVE G  PD  T T LI  + +      AL L+  M +     D + YNTL++ 
Sbjct: 196 DKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDG 255

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
              +G +E+A  L++ M +S    P++ +Y  ++N Y S G+V  A  L++ M E G+  
Sbjct: 256 FCKVGEMEKASELWDGM-ISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKP 314

Query: 467 NVMGCTCLIQCL---GKARRIDDLVRVFGVSIDRGVKPD 502
            ++ C  +I+     G + + D+ +   G  I +GV PD
Sbjct: 315 TLVTCNTVIKGYCRSGDSSKADEFL---GRMIAKGVAPD 350



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 136/289 (47%), Gaps = 1/289 (0%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           +TY+T+I    R  L +EA E    M   GL P   TY+AI++   K G+      +   
Sbjct: 2   VTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIE 61

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
            +  G  PD   ++ L        ++   + +  EM   GV P+LV +++L+    +   
Sbjct: 62  MLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLMAVFSRNRH 121

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
              A   F +M + GL PD    T L+  Y +     +AL++ + M E    +D I YNT
Sbjct: 122 LDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNT 181

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
           +LN      ++ +A++LF++M +     PD Y++T +++ +   GN+  A+ LF  M++ 
Sbjct: 182 ILNGLCKEKMLTDADKLFDEM-VERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQR 240

Query: 463 GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
            +  +++    LI    K   ++    ++   I R + P+    G L++
Sbjct: 241 NIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILIN 289



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 121/260 (46%), Gaps = 5/260 (1%)

Query: 148 IPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIE 207
           +P   +  + + + +  +   ++  +F  +K   L P + + Y V M    + R   ++E
Sbjct: 103 VPDLVSFSSLMAVFSRNRHLDQALVYFRDMKKFGLVP-DNVIYTVLMHG--YCRNGNMLE 159

Query: 208 QLA--NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
            L   +EM+     LD I Y+TI+    +  +  +A + F+ M + G +PD  T++ ++ 
Sbjct: 160 ALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIH 219

Query: 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325
            + + G + + LSL+        KPD +A++ L   F + G+ +    +   M S  + P
Sbjct: 220 GHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFP 279

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
           N + Y  L+ A    G    A  L+D M+E G+ P   T   +IK Y ++  +  A E  
Sbjct: 280 NHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFL 339

Query: 386 ERMRENKWPMDFILYNTLLN 405
            RM       D I YNTL+N
Sbjct: 340 GRMIAKGVAPDHISYNTLIN 359



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 96/212 (45%), Gaps = 38/212 (17%)

Query: 327 LVVYNTLLEAMGKAG-----------------KPGL------------------ARSLFD 351
           +V YNTL+ A  + G                 KP L                  A+ +  
Sbjct: 1   MVTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILI 60

Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELW-ERMRENKWPMDFILYNTLLNMCADI 410
           EM+  GL+PD  T   L+    +     +A E++ E +R+   P D + +++L+ + +  
Sbjct: 61  EMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVP-DLVSFSSLMAVFSRN 119

Query: 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG 470
             +++A   F DMK      PDN  YT +++ Y   GN+  A+++ +EM E G  ++V+ 
Sbjct: 120 RHLDQALVYFRDMKKFGLV-PDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIA 178

Query: 471 CTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
              ++  L K + + D  ++F   ++RG  PD
Sbjct: 179 YNTILNGLCKEKMLTDADKLFDEMVERGALPD 210


>gi|414586649|tpg|DAA37220.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
 gi|414586650|tpg|DAA37221.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
          Length = 969

 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 95/385 (24%), Positives = 181/385 (47%), Gaps = 25/385 (6%)

Query: 184 PMETIFYNVTMKSLRFGRQF------QLIEQLANEMVSNEIELDNITYSTIITCAKRCNL 237
           P   + YN+ + S+  G +        L E++  EM+++   L+ +  +    C      
Sbjct: 376 PPGYVVYNIFIGSICSGEELPSPDLLALAEKVYEEMLASSCVLNKVNTANFARCLCGMGK 435

Query: 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
           FD+A +  + M + G +PD  TYS ++    ++ KVE+   L++   + G  PD   +++
Sbjct: 436 FDKAFQIIKLMMRKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVIPDVYTYTI 495

Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
           L   F + G  +  R    EM+S+G  P++V Y  LL A  K  +   A  +F  MV++G
Sbjct: 496 LIDSFCKVGLIEQARSWFDEMESVGCSPSVVTYTALLHAYLKTKQVPQASDIFHRMVDAG 555

Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERM--RENKWPMDF--------------ILYN 401
             P+  T +AL+    KA  ++ A E++ +M    +    DF              + Y 
Sbjct: 556 CAPNTITYSALVDGLCKAGESQKACEVYAKMIGTSDNVGSDFYFEGEHTDSIAPNVVTYG 615

Query: 402 TLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461
            L++       V +A+ L + M  S+ C+P++  Y A+++ +   G +DNA E+F  MS+
Sbjct: 616 ALIDGLCKAHKVVDAQELLDVMS-SNGCEPNHIIYDALIDGFCKVGKLDNAQEVFFRMSK 674

Query: 462 LGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSED 521
            G    V   T LI  + K RR+D  ++V    ++    P+      ++  +      + 
Sbjct: 675 CGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCTPNVVTYTAMIDGLCRIGECQK 734

Query: 522 VGKVITCLQQ--ANPKLVAFLNLIE 544
             K+++ +++   NP +V + +LI+
Sbjct: 735 ALKLLSMMEKRGCNPNVVTYTSLID 759



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 157/349 (44%), Gaps = 17/349 (4%)

Query: 170 SYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTII 229
           S F+F    + ++ P   + Y   +  L    +    ++L + M SN  E ++I Y  +I
Sbjct: 595 SDFYFEGEHTDSIAP-NVVTYGALIDGLCKAHKVVDAQELLDVMSSNGCEPNHIIYDALI 653

Query: 230 TCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWK 289
               +    D A E F RM K G +P   TY++++D   K  +++  + +  + + S   
Sbjct: 654 DGFCKVGKLDNAQEVFFRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCT 713

Query: 290 PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSL 349
           P+ + ++ +       G+      +L  M+  G  PN+V Y +L++ +GK+GK  ++  L
Sbjct: 714 PNVVTYTAMIDGLCRIGECQKALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGKVDMSLQL 773

Query: 350 FDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN---- 405
           F +M+  G  P+  T   LI     A    +A  L   M++  WP     Y +++     
Sbjct: 774 FTQMITQGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYVQGYCSVVQGFSK 833

Query: 406 -MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
              A +GL+EE E        S         Y  +++ +   G ++ A+EL +EM E+  
Sbjct: 834 KFIASLGLLEELE--------SHGMVSIAPVYGLLIDSFSKAGRLEKALELHKEMMEVSS 885

Query: 465 AINVMG---CTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
           ++N+      T LIQ L  A +++    ++     +GV P+     CL+
Sbjct: 886 SLNITSKDTYTSLIQALCLASQLEKAFELYSEITRKGVVPELSAFICLI 934



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 129/320 (40%), Gaps = 42/320 (13%)

Query: 217 EIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV 276
           + +LD +  + +I+     +LFDEAI +  RM     +P+ VTY  +L  + K  ++   
Sbjct: 269 DFKLDTVLCTQMISGLMEASLFDEAISFLHRMRCNSCIPNVVTYRTLLAGFLKKKQLGWC 328

Query: 277 LSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA 336
             +    +  G  P+P  F+ L   +  + DY     +L  M   G  P  VVYN  + +
Sbjct: 329 KRIISMMMNEGCNPNPSLFNSLVHSYCNARDYPYAYKLLNRMAGCGCPPGYVVYNIFIGS 388

Query: 337 -----------------------------MGKAGKPGLARSL-----FDE-------MVE 355
                                        + K      AR L     FD+       M+ 
Sbjct: 389 ICSGEELPSPDLLALAEKVYEEMLASSCVLNKVNTANFARCLCGMGKFDKAFQIIKLMMR 448

Query: 356 SGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEE 415
            G  PD  T + +I    +A   + A  L++ M+      D   Y  L++    +GL+E+
Sbjct: 449 KGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVIPDVYTYTILIDSFCKVGLIEQ 508

Query: 416 AERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLI 475
           A   F++M+ S  C P   +YTA+L+ Y     V  A ++F  M + G A N +  + L+
Sbjct: 509 ARSWFDEME-SVGCSPSVVTYTALLHAYLKTKQVPQASDIFHRMVDAGCAPNTITYSALV 567

Query: 476 QCLGKARRIDDLVRVFGVSI 495
             L KA        V+   I
Sbjct: 568 DGLCKAGESQKACEVYAKMI 587



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 88/414 (21%), Positives = 164/414 (39%), Gaps = 52/414 (12%)

Query: 132 NDCDNTEEAFLRAITEIPHQPTRENALLI--LNSLKFWQKSYFFFNWIKSQNLFPMETIF 189
           +D D   E FLR      H+    +A+++  L S++  +    FF W + Q  +      
Sbjct: 85  SDFDGKAERFLRR-----HRDFLNDAVVVAVLRSVRTPELCVRFFLWAERQVGYSHTGAC 139

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN   + L F  + +  E+L  E+  ++ E+     + I+    R   + +A+E   R+ 
Sbjct: 140 YNALAEVLHFDDRARTTERLLREIGEDDREVLGRLLNVIVRKCCRHGAWAKALEELGRLK 199

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVE----------------------------------- 274
             G  P   TY+A++ V A +G+++                                   
Sbjct: 200 DFGYRPSGATYNALVQVLATAGQMDMGFRVQKEMSELGFCTDKFTVGCFAQALCKEGRWS 259

Query: 275 EVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLL 334
           + L + ER     +K D +  + +     E+  +D     L  M+     PN+V Y TLL
Sbjct: 260 DALVMIER---EDFKLDTVLCTQMISGLMEASLFDEAISFLHRMRCNSCIPNVVTYRTLL 316

Query: 335 EAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWP 394
               K  + G  + +   M+  G  P+     +L+  Y  AR    A +L  RM     P
Sbjct: 317 AGFLKKKQLGWCKRIISMMMNEGCNPNPSLFNSLVHSYCNARDYPYAYKLLNRMAGCGCP 376

Query: 395 MDFILYNTLL-NMCA-----DIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
             +++YN  + ++C+        L+  AE+++E+M L+  C  +  +           G 
Sbjct: 377 PGYVVYNIFIGSICSGEELPSPDLLALAEKVYEEM-LASSCVLNKVNTANFARCLCGMGK 435

Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            D A ++ + M   G   +    + +I  L +A +++    +F      GV PD
Sbjct: 436 FDKAFQIIKLMMRKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVIPD 489


>gi|125538899|gb|EAY85294.1| hypothetical protein OsI_06665 [Oryza sativa Indica Group]
          Length = 632

 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 94/321 (29%), Positives = 159/321 (49%), Gaps = 19/321 (5%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVT---MKSLRFGRQFQLIEQLANEMVSNEIELDNITY 225
           ++Y F++ ++ +   P   +  N+     K+ R     +L E++    VS+ I  + +TY
Sbjct: 318 EAYHFYHEMQREGCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMG---VSHCIP-NVVTY 373

Query: 226 STIITCAKRCNLFD------EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
           +TII       LF+      E   WFERM  +G+ P   TYS ++D + K+ ++E+ + L
Sbjct: 374 NTIIKA-----LFESKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMML 428

Query: 280 YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
            E     G+ P P A+  L    G++  YD    + QE+K      +  VY  +++ +GK
Sbjct: 429 LEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGK 488

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
           AG+   A +LFDEM + G TP+     AL+    +A    +AL    +M+E+    D   
Sbjct: 489 AGRLDDAINLFDEMSKLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINS 548

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           YN +LN  A  G    A  +  +MK S   KPD  SY  +L+     G  + A EL +EM
Sbjct: 549 YNIILNGLAKTGGPHRAMEMLTNMKNST-IKPDAVSYNTVLSALSHAGMFEEAAELMKEM 607

Query: 460 SELGVAINVMGCTCLIQCLGK 480
           + LG   +++  + +++ +GK
Sbjct: 608 NALGFEYDLITYSSILEAIGK 628



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 94/355 (26%), Positives = 166/355 (46%), Gaps = 6/355 (1%)

Query: 160 ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNE-- 217
           +L + K   K+   F  IK++   P    + ++ +  +  G Q++ + +L NEM SNE  
Sbjct: 168 MLGNAKMIGKAITIFYQIKARKCQPTAQAYNSMIIMLIHEG-QYEKVHELYNEM-SNEGH 225

Query: 218 IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL 277
            + D +TYS +I+   +    D AI     M + G+ P    Y+ I+ ++ K   V   L
Sbjct: 226 CQPDTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFKLDNVHGAL 285

Query: 278 SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
           SL+E       +PD   ++ L +  G++G  D   +   EM+  G +P+ VV N ++  +
Sbjct: 286 SLFEEMRYMYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQREGCKPDTVVMNNMINFL 345

Query: 338 GKAGKPGLARSLFDEMVESGLTPDEKTLTALIK-IYGKARWAKDALELWERMRENKWPMD 396
           GKAG+      LF+EM  S   P+  T   +IK ++       +    +ERM+ +     
Sbjct: 346 GKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERMKGSGISPS 405

Query: 397 FILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELF 456
              Y+ L++       +E+A  L E+M    +  P   +Y ++++  G     D A ELF
Sbjct: 406 PFTYSILIDGFCKTNRIEKAMMLLEEMDEKGF-PPCPAAYCSLIDALGKAKRYDLACELF 464

Query: 457 EEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
           +E+ E   + +      +I+ LGKA R+DD + +F      G  P+      L+S
Sbjct: 465 QELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMS 519



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 94/358 (26%), Positives = 170/358 (47%), Gaps = 9/358 (2%)

Query: 151 QPTRE---NALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSL-RFGRQFQLI 206
           QPT +   + +++L     ++K +  +N + ++     +T+ Y+  + +  + GRQ   I
Sbjct: 191 QPTAQAYNSMIIMLIHEGQYEKVHELYNEMSNEGHCQPDTVTYSALISAFCKLGRQDSAI 250

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
            +L NEM  N ++     Y+ II+   + +    A+  FE M      PD  TY+ ++  
Sbjct: 251 -RLLNEMKENGMQPTAKIYTMIISLFFKLDNVHGALSLFEEMRYMYCRPDVFTYTELIRG 309

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
             K+G+++E    Y      G KPD +  + +    G++G  D    + +EM      PN
Sbjct: 310 LGKAGRIDEAYHFYHEMQREGCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPN 369

Query: 327 LVVYNTLLEAMGKA-GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
           +V YNT+++A+ ++  +     S F+ M  SG++P   T + LI  + K    + A+ L 
Sbjct: 370 VVTYNTIIKALFESKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLL 429

Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYS-YTAMLNIYG 444
           E M E  +P     Y +L++        + A  LF+++K  + C   +   Y  M+   G
Sbjct: 430 EEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELK--ENCGSSSARVYAVMIKHLG 487

Query: 445 SGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
             G +D+AI LF+EMS+LG   NV     L+  L +A  +D+ +       + G  PD
Sbjct: 488 KAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPD 545



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 103/437 (23%), Positives = 177/437 (40%), Gaps = 19/437 (4%)

Query: 83  RTPLLSKPKSTWVNPTKPRRSVLSLQRQKRSTYSYNPRVRDL--KLFARKLNDCDNTEEA 140
           R P L   +    +P   RR   +     +   + +PR  D    L  R  N     +E 
Sbjct: 4   RAPCLLAARGIASSPHLARRLKQTENEIVQMFRTPSPRNEDAVAALSPRYTNSVRVLDER 63

Query: 141 FLRAITEIPHQPTRENALLILN-SLKFW------------QKSYFFFNWIKSQNLFPMET 187
           F+R +      P  E AL +L   +  W                 FF W   +  +  +T
Sbjct: 64  FIRILKIFKWGPDAERALEVLMLRVDHWLVREVMKTDVGVNVKMQFFRWAAKKRNYQHDT 123

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEI-ELDNITYSTIITCAKRCNLFDEAIEWFE 246
             Y   +  L    Q+  + ++  EMV + I  +  +  S +I       +  +AI  F 
Sbjct: 124 STYMALIHCLELVEQYGEMWKMIQEMVRSPICVVTPMELSQVIRMLGNAKMIGKAITIFY 183

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW-KPDPIAFSVLGKMFGES 305
           ++      P    Y++++ +    G+ E+V  LY      G  +PD + +S L   F + 
Sbjct: 184 QIKARKCQPTAQAYNSMIIMLIHEGQYEKVHELYNEMSNEGHCQPDTVTYSALISAFCKL 243

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G  D    +L EMK  G+QP   +Y  ++    K      A SLF+EM      PD  T 
Sbjct: 244 GRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFKLDNVHGALSLFEEMRYMYCRPDVFTY 303

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
           T LI+  GKA    +A   +  M+      D ++ N ++N     G +++  +LFE+M +
Sbjct: 304 TELIRGLGKAGRIDEAYHFYHEMQREGCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGV 363

Query: 426 SDYCKPDNYSYTAMLN-IYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484
           S +C P+  +Y  ++  ++ S   V      FE M   G++ +    + LI    K  RI
Sbjct: 364 S-HCIPNVVTYNTIIKALFESKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRI 422

Query: 485 DDLVRVFGVSIDRGVKP 501
           +  + +     ++G  P
Sbjct: 423 EKAMMLLEEMDEKGFPP 439


>gi|410110087|gb|AFV61123.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           urticoides]
          Length = 423

 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 88/280 (31%), Positives = 146/280 (52%), Gaps = 7/280 (2%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           TYST+IT   +  LFD A+ W ++M +  +  D V YS ++++  K     + +S++ R 
Sbjct: 1   TYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 60

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
            +SG+ PD +A++ +  +FG++  +   R ++ EMK+ GV PN   Y+TLL    +  K 
Sbjct: 61  KSSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKF 120

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
             A S+F EM E     D  T   +I +YG+   AK+A +L+  MR+     + + YNTL
Sbjct: 121 LEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTL 180

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           L +  D  L  EA  LF  M+  +  + +  +Y +M+ IYG     + A  L +EM   G
Sbjct: 181 LRVYGDAELFGEAIHLFRLMQRKN-IEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRG 239

Query: 464 VAINVMGCTCLIQCLGKARRIDDLVRVF------GVSIDR 497
           +  N +  + +I   GK  ++D    +F      GV ID+
Sbjct: 240 IEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQ 279



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/366 (22%), Positives = 172/366 (46%), Gaps = 6/366 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +KS    P + + YN  +      + F+    L +EM +  +  +  +YS
Sbjct: 50  YSKAISIFSRLKSSGFTP-DLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYS 108

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY + G  +E   L+      
Sbjct: 109 TLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 168

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   ++ N+V YN+++   GK  +   A
Sbjct: 169 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKA 228

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R +   +D IL+ T++  
Sbjct: 229 NNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVA 288

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K     +PDN      ++I    G ++ A  +F +  + G   
Sbjct: 289 YERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVK 343

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           ++     +I  L K ++  ++V VF      G  PD  +   +L+     +  +    V 
Sbjct: 344 DITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSNVIAVVLNAYGKLQEFDKANDVY 403

Query: 527 TCLQQA 532
             +Q+ 
Sbjct: 404 MEMQEV 409



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 138/271 (50%), Gaps = 1/271 (0%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
            +M  +++  D + YS +I  +++   + +AI  F R+  +G  PD V Y+A+++V+ K+
Sbjct: 23  QKMEQDQVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKSSGFTPDLVAYNAMINVFGKA 82

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
               E  SL      +G  P+  ++S L  M+ E+  +     V  EM+ +    +L   
Sbjct: 83  KLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTC 142

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
           N +++  G+ G    A  LF  M + G+ P+  +   L+++YG A    +A+ L+  M+ 
Sbjct: 143 NIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR 202

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
                + + YN+++ +       E+A  L ++M+ S   +P++ +Y+ +++I+G  G +D
Sbjct: 203 KNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQ-SRGIEPNSITYSTIISIWGKVGKLD 261

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
            A  LF+++   GV I+ +    +I    +A
Sbjct: 262 RAAMLFQKLRSSGVEIDQILFQTMIVAYERA 292



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 90/204 (44%), Gaps = 1/204 (0%)

Query: 330 YNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMR 389
           Y+TL+   GK G    A S   +M +  +  D    + LI++  K      A+ ++ R++
Sbjct: 2   YSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELSRKLCDYSKAISIFSRLK 61

Query: 390 ENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNV 449
            + +  D + YN ++N+     L  EA  L  +MK +    P+  SY+ +L +Y      
Sbjct: 62  SSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAG-VMPNTTSYSTLLTMYVENKKF 120

Query: 450 DNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCL 509
             A+ +F EM E+   +++  C  +I   G+     +  ++F      G++P+      L
Sbjct: 121 LEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTL 180

Query: 510 LSVVSLCETSEDVGKVITCLQQAN 533
           L V    E   +   +   +Q+ N
Sbjct: 181 LRVYGDAELFGEAIHLFRLMQRKN 204



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 75/180 (41%), Gaps = 31/180 (17%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY- 267
           L  EM S  IE ++ITYSTII+   +    D A   F+++  +G+  D++ +  ++  Y 
Sbjct: 231 LIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYE 290

Query: 268 ------------------------------AKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
                                         A +G++EE   ++ + + +G   D   F  
Sbjct: 291 RAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFER 350

Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
           +  +  +   Y  +  V  +M+ LG  P+  V   +L A GK  +   A  ++ EM E G
Sbjct: 351 MIHLLSKYKKYSNVVEVFDKMRGLGYFPDSNVIAVVLNAYGKLQEFDKANDVYMEMQEVG 410


>gi|357140125|ref|XP_003571621.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Brachypodium distachyon]
          Length = 814

 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 137/274 (50%), Gaps = 1/274 (0%)

Query: 191 NVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYK 250
           N  +  L  G+  +   ++   MV+  +ELDNITY+ +I    + +  +EA++  + M +
Sbjct: 481 NALIHGLCEGKNMKGATEVLRTMVNKGMELDNITYNIMIQGCCKDSKIEEALKLRDDMIR 540

Query: 251 TGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDG 310
            G  PD   +++I+  Y   GK+EE L L  +    G +PD +++  +   + ++ D   
Sbjct: 541 KGFKPDAYMFNSIIHAYCDLGKMEEALHLLGQMKIEGVQPDVVSYGTIIDGYCKAKDIQK 600

Query: 311 IRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK 370
               L E+ + G++PN V+YN L+   G+ G    A  + D M   G+ P   T  +L+ 
Sbjct: 601 ANEYLNELMACGLKPNAVIYNALIGGYGRNGNISGAIGVLDTMESIGIQPTNVTYCSLMH 660

Query: 371 IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCK 430
               A    +A  ++E+ R+N   +  + Y  ++     IG ++EA   FE+M+ S    
Sbjct: 661 WMCHAGLVDEAKTMFEQSRKNSIEVGVVGYTIMIQGLCKIGKMDEAMNYFEEMR-SRSIP 719

Query: 431 PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
           P+  +YT ++  Y   GN + A +LF+EM   G+
Sbjct: 720 PNKITYTTLMYAYCKSGNNEEASKLFDEMVSSGI 753



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 138/278 (49%), Gaps = 1/278 (0%)

Query: 185 METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEW 244
           ++ I YN+ ++      + +   +L ++M+    + D   +++II         +EA+  
Sbjct: 510 LDNITYNIMIQGCCKDSKIEEALKLRDDMIRKGFKPDAYMFNSIIHAYCDLGKMEEALHL 569

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
             +M   G+ PD V+Y  I+D Y K+  +++        +A G KP+ + ++ L   +G 
Sbjct: 570 LGQMKIEGVQPDVVSYGTIIDGYCKAKDIQKANEYLNELMACGLKPNAVIYNALIGGYGR 629

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
           +G+  G   VL  M+S+G+QP  V Y +L+  M  AG    A+++F++  ++ +      
Sbjct: 630 NGNISGAIGVLDTMESIGIQPTNVTYCSLMHWMCHAGLVDEAKTMFEQSRKNSIEVGVVG 689

Query: 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
            T +I+   K     +A+  +E MR    P + I Y TL+      G  EEA +LF++M 
Sbjct: 690 YTIMIQGLCKIGKMDEAMNYFEEMRSRSIPPNKITYTTLMYAYCKSGNNEEASKLFDEM- 748

Query: 425 LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
           +S    PDN SY  ++  +    ++D AIE   E+S +
Sbjct: 749 VSSGIVPDNVSYNTLVTGFSQVDSLDKAIEKAAEISSI 786



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/350 (22%), Positives = 157/350 (44%), Gaps = 39/350 (11%)

Query: 190 YNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERM 248
           YN+ M +L + GR  + I +L   M  + +    +T+  +I   KR + F E       M
Sbjct: 269 YNLLMDALCKSGRVDEAI-RLKGRMEESRVAPSMVTFGILINGLKRSDRFGEVGALLREM 327

Query: 249 YKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY 308
              G+ P+EV  + ++D + + G   E + L++  V+   K   + ++++ +   + G+ 
Sbjct: 328 EGLGITPNEVICNELIDWHCRKGHFTEAIRLFDEMVSKEMKSTAVTYNLIARALCKEGEM 387

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEA-MGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
           +    +L+EM S G+  +  ++N+++   + + G+      L  EMV+ G+ P++  +TA
Sbjct: 388 ERAERILEEMLSTGMTIHSGLFNSVVAGLLQRTGRLESVVRLISEMVKRGMKPNDALMTA 447

Query: 368 LIKIYGKARWAKDALELWERMRE----------------------------------NK- 392
             K   + R  ++A+ +W +M E                                  NK 
Sbjct: 448 CTKQLCQGRRHQEAVGIWLKMLEKGLCINIATSNALIHGLCEGKNMKGATEVLRTMVNKG 507

Query: 393 WPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNA 452
             +D I YN ++  C     +EEA +L +DM    + KPD Y + ++++ Y   G ++ A
Sbjct: 508 MELDNITYNIMIQGCCKDSKIEEALKLRDDMIRKGF-KPDAYMFNSIIHAYCDLGKMEEA 566

Query: 453 IELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           + L  +M   GV  +V+    +I    KA+ I          +  G+KP+
Sbjct: 567 LHLLGQMKIEGVQPDVVSYGTIIDGYCKAKDIQKANEYLNELMACGLKPN 616



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 148/345 (42%), Gaps = 42/345 (12%)

Query: 241 AIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGK 300
           A E    M   G+  D +TY+ ++    K  K+EE L L +  +  G+KPD   F+ +  
Sbjct: 496 ATEVLRTMVNKGMELDNITYNIMIQGCCKDSKIEEALKLRDDMIRKGFKPDAYMFNSIIH 555

Query: 301 MFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTP 360
            + + G  +   ++L +MK  GVQP++V Y T+++   KA     A    +E++  GL P
Sbjct: 556 AYCDLGKMEEALHLLGQMKIEGVQPDVVSYGTIIDGYCKAKDIQKANEYLNELMACGLKP 615

Query: 361 DEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLF 420
           +     ALI  YG+                              N+   IG+++  E + 
Sbjct: 616 NAVIYNALIGGYGRNG----------------------------NISGAIGVLDTMESIG 647

Query: 421 EDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK 480
                    +P N +Y ++++     G VD A  +FE+  +  + + V+G T +IQ L K
Sbjct: 648 --------IQPTNVTYCSLMHWMCHAGLVDEAKTMFEQSRKNSIEVGVVGYTIMIQGLCK 699

Query: 481 ARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVA 538
             ++D+ +  F     R + P+      L+        +E+  K+   +  +   P  V+
Sbjct: 700 IGKMDEAMNYFEEMRSRSIPPNKITYTTLMYAYCKSGNNEEASKLFDEMVSSGIVPDNVS 759

Query: 539 FLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNR 583
           +  L+    TGF  +    + + K  E+ +     +CL ++  NR
Sbjct: 760 YNTLV----TGFSQVDSLDKAIEKAAEISSIMTQNDCLDNVLVNR 800



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/287 (23%), Positives = 126/287 (43%), Gaps = 12/287 (4%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLM--PDEVTYSAILDVYAKSGKVEEVLSLYE 281
           +Y+++I    +    D+  +    +   GL      V Y+ ++D   KSG+V+E + L  
Sbjct: 231 SYTSMIKALCKVGKVDDGFKILSDLIHAGLQQSAGAVPYNLLMDALCKSGRVDEAIRLKG 290

Query: 282 RGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG 341
           R   S   P  + F +L      S  +  +  +L+EM+ LG+ PN V+ N L++   + G
Sbjct: 291 RMEESRVAPSMVTFGILINGLKRSDRFGEVGALLREMEGLGITPNEVICNELIDWHCRKG 350

Query: 342 KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYN 401
               A  LFDEMV    + + K+      +  +A   +  +E  ER+ E        +++
Sbjct: 351 HFTEAIRLFDEMV----SKEMKSTAVTYNLIARALCKEGEMERAERILEEMLSTGMTIHS 406

Query: 402 TLLN-----MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELF 456
            L N     +    G +E   RL  +M +    KP++   TA       G     A+ ++
Sbjct: 407 GLFNSVVAGLLQRTGRLESVVRLISEM-VKRGMKPNDALMTACTKQLCQGRRHQEAVGIW 465

Query: 457 EEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
            +M E G+ IN+     LI  L + + +     V    +++G++ D+
Sbjct: 466 LKMLEKGLCINIATSNALIHGLCEGKNMKGATEVLRTMVNKGMELDN 512



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 56/109 (51%)

Query: 216 NEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEE 275
           N IE+  + Y+ +I    +    DEA+ +FE M    + P+++TY+ ++  Y KSG  EE
Sbjct: 681 NSIEVGVVGYTIMIQGLCKIGKMDEAMNYFEEMRSRSIPPNKITYTTLMYAYCKSGNNEE 740

Query: 276 VLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQ 324
              L++  V+SG  PD ++++ L   F +    D       E+ S+  Q
Sbjct: 741 ASKLFDEMVSSGIVPDNVSYNTLVTGFSQVDSLDKAIEKAAEISSIMTQ 789



 Score = 49.3 bits (116), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 77/179 (43%), Gaps = 4/179 (2%)

Query: 325 PNLVVYNTLLEAMGKAGKPGLARSLFDEMVE-SGLTPDEKTLTALIKIYGKARWAKDALE 383
           P++   N LLEA+ + G  G    +FDEM +   +TP+  + T++IK   K     D  +
Sbjct: 191 PSVKTCNALLEALARTGNLGATCKVFDEMRDCKTVTPNGYSYTSMIKALCKVGKVDDGFK 250

Query: 384 LWERMREN--KWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
           +   +     +     + YN L++     G V+EA RL   M+ S    P   ++  ++N
Sbjct: 251 ILSDLIHAGLQQSAGAVPYNLLMDALCKSGRVDEAIRLKGRMEESRV-APSMVTFGILIN 309

Query: 442 IYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
                        L  EM  LG+  N + C  LI    +     + +R+F   + + +K
Sbjct: 310 GLKRSDRFGEVGALLREMEGLGITPNEVICNELIDWHCRKGHFTEAIRLFDEMVSKEMK 368



 Score = 43.5 bits (101), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 69/156 (44%), Gaps = 5/156 (3%)

Query: 373 GKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPD 432
           G  R A DA  +    R +         N LL   A  G +    ++F++M+      P+
Sbjct: 172 GSLRLAVDAFHVLSSRRASP---SVKTCNALLEALARTGNLGATCKVFDEMRDCKTVTPN 228

Query: 433 NYSYTAMLNIYGSGGNVDNAIELFEEMSELGV--AINVMGCTCLIQCLGKARRIDDLVRV 490
            YSYT+M+      G VD+  ++  ++   G+  +   +    L+  L K+ R+D+ +R+
Sbjct: 229 GYSYTSMIKALCKVGKVDDGFKILSDLIHAGLQQSAGAVPYNLLMDALCKSGRVDEAIRL 288

Query: 491 FGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
            G   +  V P     G L++ +   +   +VG ++
Sbjct: 289 KGRMEESRVAPSMVTFGILINGLKRSDRFGEVGALL 324


>gi|302826103|ref|XP_002994591.1| hypothetical protein SELMODRAFT_138844 [Selaginella moellendorffii]
 gi|300137362|gb|EFJ04342.1| hypothetical protein SELMODRAFT_138844 [Selaginella moellendorffii]
          Length = 599

 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 84/338 (24%), Positives = 168/338 (49%), Gaps = 3/338 (0%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           +F   K++NL P   I YN  +++       + +E L  +M     + +   Y+T++   
Sbjct: 109 WFEKFKAENLVP-GGIVYNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGF 167

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
                 ++ + +F R+   GL P   TY  I+ ++ K+G + + L + E     G  P+ 
Sbjct: 168 AEIRDEEKCLSFFHRLKACGLSPTAATYGCIVKLFTKAGNMAKALDILEEMDKHGVSPNK 227

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           + ++++   +   GD+     V ++M S G++P++V+YN L+ A  KAG+   A  + + 
Sbjct: 228 MIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVIYNILVHAFCKAGRMDKALGVLEN 287

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           +  + L P  +T T+++  Y K    + ALE+++R++        + YN+LL+  A    
Sbjct: 288 IEANRLLPTIETYTSILDGYVKGGNIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQ 347

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
           +E A  +  +M L++   P+  SYTA+   Y   G+V+ A  +F+ M +  +AI+++   
Sbjct: 348 MENARLMLNEM-LANGVVPNERSYTALTEGYARAGDVEKAFGMFQRMKKENLAIDIVAYG 406

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
            L++   K+  +     VF    D G+K  +R+  C +
Sbjct: 407 ALLKACCKSGAMQRAAEVFQQITDAGLK-HNRITYCTM 443



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/399 (22%), Positives = 190/399 (47%), Gaps = 8/399 (2%)

Query: 137 TEEAFLRAITEIPHQPTRENALLILNS---LKFWQKSYFFFNWIKSQNLFPMETIFYNVT 193
           T EA L  + E   Q        +LN    ++  +K   FF+ +K+  L P    +  + 
Sbjct: 140 TVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKACGLSPTAATYGCIV 199

Query: 194 MKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGL 253
               + G   + ++ L  EM  + +  + + Y+ I+    R   F  A + +E M   GL
Sbjct: 200 KLFTKAGNMAKALDIL-EEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGL 258

Query: 254 MPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRY 313
            PD V Y+ ++  + K+G++++ L + E   A+   P    ++ +   + + G+      
Sbjct: 259 KPDIVIYNILVHAFCKAGRMDKALGVLENIEANRLLPTIETYTSILDGYVKGGNIQKALE 318

Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYG 373
           V   +K+ G++P +V YN+LL  + KA +   AR + +EM+ +G+ P+E++ TAL + Y 
Sbjct: 319 VFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLNEMLANGVVPNERSYTALTEGYA 378

Query: 374 KARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDN 433
           +A   + A  +++RM++    +D + Y  LL  C   G ++ A  +F+ +  +   K + 
Sbjct: 379 RAGDVEKAFGMFQRMKKENLAIDIVAYGALLKACCKSGAMQRAAEVFQQITDAGL-KHNR 437

Query: 434 YSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGV 493
            +Y  ML+ +   G +  A +L  +M + G  ++ +  T  I+   ++   +++     V
Sbjct: 438 ITYCTMLDGWARKGELSKARDLLNDMQKHGFHLDTICYTSFIKACFRSGDTEEVTETLAV 497

Query: 494 SIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQA 532
             ++ ++ + R      +++     + D  + I+C +QA
Sbjct: 498 MREKKLEVNART---YTTLIHGWLAAADPDQAISCYEQA 533



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 96/430 (22%), Positives = 195/430 (45%), Gaps = 19/430 (4%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           F  +++ ++ P   I Y   + +    R  +       EM+S  I+L+   + +II+   
Sbjct: 40  FEAMRASHIKPNVHI-YTSLIHAYAEARDMEGAVACTEEMLSQGIQLNEAVFCSIISGYA 98

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
                + A  WFE+     L+P  + Y++I+  Y ++G +E V +L  +    G++ +  
Sbjct: 99  SAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLG 158

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
            ++ +   F E  D +        +K+ G+ P    Y  +++   KAG    A  + +EM
Sbjct: 159 LYTTVLNGFAEIRDEEKCLSFFHRLKACGLSPTAATYGCIVKLFTKAGNMAKALDILEEM 218

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
            + G++P++     ++  Y +      A ++WE M       D ++YN L++     G +
Sbjct: 219 DKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVIYNILVHAFCKAGRM 278

Query: 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTC 473
           ++A  + E+++ ++   P   +YT++L+ Y  GGN+  A+E+F+ +   G+   V+    
Sbjct: 279 DKALGVLENIE-ANRLLPTIETYTSILDGYVKGGNIQKALEVFDRIKTAGLRPGVVSYNS 337

Query: 474 LIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCET---SEDVGKVITCLQ 530
           L+  L KAR++++   +    +  GV P++R      S  +L E    + DV K     Q
Sbjct: 338 LLSGLAKARQMENARLMLNEMLANGVVPNER------SYTALTEGYARAGDVEKAFGMFQ 391

Query: 531 QANPK-----LVAFLNLIED--NSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNR 583
           +   +     +VA+  L++    S   +   E F+ +        R  +C  L    R  
Sbjct: 392 RMKKENLAIDIVAYGALLKACCKSGAMQRAAEVFQQITDAGLKHNRITYCTMLDGWARKG 451

Query: 584 NLNERAHELL 593
            L+ +A +LL
Sbjct: 452 ELS-KARDLL 460



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 73/325 (22%), Positives = 141/325 (43%), Gaps = 34/325 (10%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           + Y + M     G  F    ++  +MVS  ++ D + Y+ ++    +    D+A+   E 
Sbjct: 228 MIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVIYNILVHAFCKAGRMDKALGVLEN 287

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           +    L+P   TY++ILD Y K G +++ L +++R   +G +P  ++++ L     ++  
Sbjct: 288 IEANRLLPTIETYTSILDGYVKGGNIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQ 347

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
            +  R +L EM + GV PN   Y  L E   +AG    A  +F  M +  L  D     A
Sbjct: 348 MENARLMLNEMLANGVVPNERSYTALTEGYARAGDVEKAFGMFQRMKKENLAIDIVAYGA 407

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK--- 424
           L+K   K+   + A E+++++ +     + I Y T+L+  A  G + +A  L  DM+   
Sbjct: 408 LLKACCKSGAMQRAAEVFQQITDAGLKHNRITYCTMLDGWARKGELSKARDLLNDMQKHG 467

Query: 425 --LSDYC-----------------------------KPDNYSYTAMLNIYGSGGNVDNAI 453
             L   C                             + +  +YT +++ + +  + D AI
Sbjct: 468 FHLDTICYTSFIKACFRSGDTEEVTETLAVMREKKLEVNARTYTTLIHGWLAAADPDQAI 527

Query: 454 ELFEEMSELGVAINVMGCTCLIQCL 478
             +E+    G+ ++     CL+  L
Sbjct: 528 SCYEQAKASGLQLDSALSNCLLSGL 552



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 109/243 (44%), Gaps = 1/243 (0%)

Query: 260 YSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMK 319
           Y  ++D YA+ G      + +E   AS  KP+   ++ L   + E+ D +G     +EM 
Sbjct: 20  YGLLVDFYARHGDKVAARATFEAMRASHIKPNVHIYTSLIHAYAEARDMEGAVACTEEML 79

Query: 320 SLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAK 379
           S G+Q N  V+ +++     AG    A   F++     L P      ++++ Y +A   +
Sbjct: 80  SQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQAGNME 139

Query: 380 DALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAM 439
               L  +M E  +  +  LY T+LN  A+I   E+    F  +K      P   +Y  +
Sbjct: 140 TVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKACGL-SPTAATYGCI 198

Query: 440 LNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGV 499
           + ++   GN+  A+++ EEM + GV+ N M    ++    +        +V+   +  G+
Sbjct: 199 VKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGL 258

Query: 500 KPD 502
           KPD
Sbjct: 259 KPD 261



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 108/238 (45%), Gaps = 1/238 (0%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           QK+   F+ IK+  L P   + YN  +  L   RQ +    + NEM++N +  +  +Y+ 
Sbjct: 314 QKALEVFDRIKTAGLRP-GVVSYNSLLSGLAKARQMENARLMLNEMLANGVVPNERSYTA 372

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           +     R    ++A   F+RM K  L  D V Y A+L    KSG ++    ++++   +G
Sbjct: 373 LTEGYARAGDVEKAFGMFQRMKKENLAIDIVAYGALLKACCKSGAMQRAAEVFQQITDAG 432

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
            K + I +  +   +   G+    R +L +M+  G   + + Y + ++A  ++G      
Sbjct: 433 LKHNRITYCTMLDGWARKGELSKARDLLNDMQKHGFHLDTICYTSFIKACFRSGDTEEVT 492

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405
                M E  L  + +T T LI  +  A     A+  +E+ + +   +D  L N LL+
Sbjct: 493 ETLAVMREKKLEVNARTYTTLIHGWLAAADPDQAISCYEQAKASGLQLDSALSNCLLS 550


>gi|326520353|dbj|BAK07435.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 652

 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 108/422 (25%), Positives = 186/422 (44%), Gaps = 15/422 (3%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN+ +++     Q +L   L  EM +  +  D  +YST++    R    D A+ +   M 
Sbjct: 122 YNLLLRAASRAGQLRLASGLLLEMRARGVAADGFSYSTLLAALTRAGHLDHALTFLPLME 181

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY- 308
              + PD V +S ++ +  ++G   + L+L+ R  A+G +PD  A++     + +S    
Sbjct: 182 ADAVAPDLVLFSNLIHLALRAGDAPKALALFSRLRAAGIRPDLKAYNAAIAAYCKSDLLR 241

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM-VESGLTPDEKTLTA 367
           D  R +L ++ + GV P+   Y  +L A+ + G+   A SLF  M   + + PD      
Sbjct: 242 DAKRLLLHDVPADGVAPDAESYAPVLAALARRGRHLAAVSLFSHMRAVARVKPDLSVFNI 301

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM--KL 425
           ++  YG+   A+DA  L+  MR    P   + YNT+L +  D GL  EA  LF  M    
Sbjct: 302 VLNAYGQLDLARDADRLFWSMRRAGVPPSVVTYNTMLRVYGDAGLFGEAVHLFGLMYSTA 361

Query: 426 SD---YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKAR 482
           SD     +P+  +Y  M+ I+G     D A  L ++M   G+  N +  + ++    KA 
Sbjct: 362 SDGGTVVRPNVVTYNTMIAIHGKALEDDKAGSLVQQMQASGIQPNAVTYSTVLSIWVKAG 421

Query: 483 RIDDLVRVFGVSIDRGVKPDDRLCGCLLSV---VSLCETSEDVGKVITCLQQANPKLVAF 539
           ++D   ++F    + G + D  L   ++       L   S+ + + +    QA PK  A 
Sbjct: 422 KLDRAAKLFDKLRESGTEMDPVLYQTMVVAYERAGLVSQSKRLLRELRHPDQAIPKETAM 481

Query: 540 LNLIEDNSTGFENIKEEFRNVIKDTEV---DARRPFCNCLIDICRNRNLNERAHELLYLG 596
             L   ++   E     FR  +   EV      R          R+R++ E   E+  LG
Sbjct: 482 KILA--SAGRVEEAAWLFRRAVHTGEVKDPSVHRAMMALFAKNRRHRSVVEVFDEMRKLG 539

Query: 597 TL 598
            L
Sbjct: 540 HL 541



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 81/340 (23%), Positives = 153/340 (45%), Gaps = 10/340 (2%)

Query: 198 RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDE 257
           R GR    +   ++      ++ D   ++ ++    + +L  +A   F  M + G+ P  
Sbjct: 272 RRGRHLAAVSLFSHMRAVARVKPDLSVFNIVLNAYGQLDLARDADRLFWSMRRAGVPPSV 331

Query: 258 VTYSAILDVYAKSGKVEEVLSL----YERGVASGW--KPDPIAFSVLGKMFGESGDYDGI 311
           VTY+ +L VY  +G   E + L    Y      G   +P+ + ++ +  + G++ + D  
Sbjct: 332 VTYNTMLRVYGDAGLFGEAVHLFGLMYSTASDGGTVVRPNVVTYNTMIAIHGKALEDDKA 391

Query: 312 RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371
             ++Q+M++ G+QPN V Y+T+L    KAGK   A  LFD++ ESG   D      ++  
Sbjct: 392 GSLVQQMQASGIQPNAVTYSTVLSIWVKAGKLDRAAKLFDKLRESGTEMDPVLYQTMVVA 451

Query: 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
           Y +A     +  L   +RE + P   I   T + + A  G VEEA  LF     +   K 
Sbjct: 452 YERAGLVSQSKRL---LRELRHPDQAIPKETAMKILASAGRVEEAAWLFRRAVHTGEVK- 507

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           D   + AM+ ++       + +E+F+EM +LG   +       +   GK +  D    ++
Sbjct: 508 DPSVHRAMMALFAKNRRHRSVVEVFDEMRKLGHLPDSETIAVTMNAYGKLKEFDKAAGLY 567

Query: 492 GVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ 531
               + G    DR+   +LS++   +  + + +++  L  
Sbjct: 568 RALREEGCVFSDRVHFQMLSLLGAQQDFDALERLVGELSH 607



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 66/277 (23%), Positives = 109/277 (39%), Gaps = 21/277 (7%)

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           + +++L +    +G       +L EM++ GV  +   Y+TLL A+ +AG    A +    
Sbjct: 120 VPYNLLLRAASRAGQLRLASGLLLEMRARGVAADGFSYSTLLAALTRAGHLDHALTFLPL 179

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M    + PD    + LI +  +A  A  AL L+ R+R      D   YN  +       L
Sbjct: 180 MEADAVAPDLVLFSNLIHLALRAGDAPKALALFSRLRAAGIRPDLKAYNAAIAAYCKSDL 239

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG-VAINVMGC 471
           + +A+RL      +D   PD  SY  +L      G    A+ LF  M  +  V  ++   
Sbjct: 240 LRDAKRLLLHDVPADGVAPDAESYAPVLAALARRGRHLAAVSLFSHMRAVARVKPDLSVF 299

Query: 472 TCLIQCLGKARRIDDLVRVFGVSIDRGVKP-------------DDRLCGCLLSVVSLC-E 517
             ++   G+     D  R+F      GV P             D  L G  + +  L   
Sbjct: 300 NIVLNAYGQLDLARDADRLFWSMRRAGVPPSVVTYNTMLRVYGDAGLFGEAVHLFGLMYS 359

Query: 518 TSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIK 554
           T+ D G V+       P +V +  +I  +    E+ K
Sbjct: 360 TASDGGTVV------RPNVVTYNTMIAIHGKALEDDK 390


>gi|410110099|gb|AFV61129.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           trifolia]
          Length = 440

 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 88/283 (31%), Positives = 145/283 (51%), Gaps = 1/283 (0%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L +EM    +  D  TYST+IT   +  LFD A+ W ++M +  +  D V YS ++++  
Sbjct: 2   LFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSR 61

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           K     + +S++ R   SG+ PD +A++ +  +FG++  +   R ++ EMK  GV PN  
Sbjct: 62  KXCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKXAGVMPNTA 121

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            Y+TLL    +  K   A S+F EM E     D  T   +I +YG+   AK+A +L+  M
Sbjct: 122 SYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM 181

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
           R+     + + YNTLL +  D  L  EA  LF  M+  +  + +  +Y +M+ IYG    
Sbjct: 182 RKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKN-IEQNVVTYNSMMMIYGKTLE 240

Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
            + A  L +EM   G+  N +  + +I   GK  ++D    +F
Sbjct: 241 HEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLF 283



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/367 (22%), Positives = 169/367 (46%), Gaps = 6/367 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K     P + + YN  +      + F+    L  EM    +  +  +YS
Sbjct: 66  YSKAISIFSRLKRSGFTP-DLVAYNAMINVFGKAKLFREARSLIGEMKXAGVMPNTASYS 124

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY + G  +E   L+      
Sbjct: 125 TLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 184

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   ++ N+V YN+++   GK  +   A
Sbjct: 185 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKA 244

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R +   +D IL+ T++  
Sbjct: 245 NNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGXEIDQILFQTMIVA 304

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K     +PDN      ++I    G ++ A  +F +  + G   
Sbjct: 305 YERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVK 359

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           ++     +I  L K ++  ++V VF      G  PD  +   +L+     +  +    V 
Sbjct: 360 DITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAXVLNAYGKLQEFDKANDVY 419

Query: 527 TCLQQAN 533
             +Q+  
Sbjct: 420 MEMQEVG 426



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 97/220 (44%), Gaps = 1/220 (0%)

Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYG 373
           +  EM+   + P+   Y+TL+   GK G    A S   +M +  +  D    + LI++  
Sbjct: 2   LFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSR 61

Query: 374 KARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDN 433
           K      A+ ++ R++ + +  D + YN ++N+     L  EA  L  +MK +    P+ 
Sbjct: 62  KXCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKXAG-VMPNT 120

Query: 434 YSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGV 493
            SY+ +L +Y        A+ +F EM E+   +++  C  +I   G+     +  ++F  
Sbjct: 121 ASYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWG 180

Query: 494 SIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN 533
               G++P+      LL V    E   +   +   +Q+ N
Sbjct: 181 MRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKN 220


>gi|242033891|ref|XP_002464340.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
 gi|241918194|gb|EER91338.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
          Length = 758

 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 86/341 (25%), Positives = 150/341 (43%), Gaps = 36/341 (10%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           +T+ +N  +  L  G + +L+E + NEM    I+ D +T +T+I    R +    A+   
Sbjct: 161 DTVVFNHLLNVLVEGSKLKLLESVYNEMTGRGIQPDVVTLNTLIKALCRAHQVRTAVLML 220

Query: 246 ERMYKTGLMPDEVTYSAIL-----------------------------------DVYAKS 270
           E M   G+ PDE T++ ++                                   + Y K 
Sbjct: 221 EEMSSHGVAPDETTFTTLMQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLINGYCKM 280

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
           G+VE+ L   ++ +A G++PD + ++       ++G       V+  M   G  P++  Y
Sbjct: 281 GRVEDALGYIQQEIADGFEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTY 340

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
           NT++  + K G+   A+ + ++MV+ G  PD  T   LI         ++AL+L   +  
Sbjct: 341 NTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTV 400

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
                D   +N L+N    +G      RLFE+MK S  C PD  +Y  +++   S G + 
Sbjct: 401 KGLSPDVYTFNILINALCKVGDPHLGIRLFEEMK-SSGCTPDEVTYNILIDHLCSMGKLG 459

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           NA++L  EM   G   + +    +I  L K  RI++   VF
Sbjct: 460 NALDLLNEMESNGCPRSTVTYNTIIDALCKKMRIEEAEEVF 500



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 140/313 (44%), Gaps = 1/313 (0%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN  +  L    +    + + N+MV      D  T++T+I      N  +EA++    + 
Sbjct: 340 YNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELT 399

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
             GL PD  T++ +++   K G     + L+E   +SG  PD + +++L       G   
Sbjct: 400 VKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLG 459

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               +L EM+S G   + V YNT+++A+ K  +   A  +FD+M   G++    T   LI
Sbjct: 460 NALDLLNEMESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLI 519

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
               KA+   DA EL E+M +     + I YN++L      G +++A  + E M  + + 
Sbjct: 520 DGLCKAKRIDDATELIEQMVKEGLQPNNITYNSILTHYCKQGNIKKAADILETMTANGF- 578

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
           + D  +Y  ++N     G    A++L   M   G+         +IQ L +   + D + 
Sbjct: 579 EIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALN 638

Query: 490 VFGVSIDRGVKPD 502
           +F    + G  PD
Sbjct: 639 LFREMTEVGEPPD 651



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 86/366 (23%), Positives = 156/366 (42%), Gaps = 23/366 (6%)

Query: 143 RAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQ 202
           R +  +  Q   E AL +LNS             +  ++  P   ++  +  K L     
Sbjct: 58  RLLAALREQSDPEAALRMLNS------------ALAREDFAPSSAVYEEIVQK-LGTAGA 104

Query: 203 FQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKT---GLMPDEVT 259
           F L+E L  EM     ++  +   + +    R   FD+A++           G+  D V 
Sbjct: 105 FDLMEGLVREMRREGHQVRAVVVRSFVESYARLRRFDDAVDLVLNQLDNDTFGVQADTVV 164

Query: 260 YSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMK 319
           ++ +L+V  +  K++ + S+Y      G +PD +  + L K    +        +L+EM 
Sbjct: 165 FNHLLNVLVEGSKLKLLESVYNEMTGRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMS 224

Query: 320 SLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAK 379
           S GV P+   + TL++   + G    A  +  +M+E+G +P   T+  LI  Y K    +
Sbjct: 225 SHGVAPDETTFTTLMQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLINGYCKMGRVE 284

Query: 380 DALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAM 439
           DAL   ++   + +  D + YNT ++     G V  A ++  D+ L +   PD ++Y  +
Sbjct: 285 DALGYIQQEIADGFEPDQVTYNTFVHGLCQNGHVSHALKVM-DLMLQEGHDPDVFTYNTV 343

Query: 440 LNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID---DLVRVFGVSID 496
           +N     G +D A  +  +M + G   +      LI  L    R++   DL R   V   
Sbjct: 344 INCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTV--- 400

Query: 497 RGVKPD 502
           +G+ PD
Sbjct: 401 KGLSPD 406



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 120/249 (48%), Gaps = 10/249 (4%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSL----RFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
            F  +KS    P E + YN+ +  L    + G    L+    NEM SN      +TY+TI
Sbjct: 429 LFEEMKSSGCTPDE-VTYNILIDHLCSMGKLGNALDLL----NEMESNGCPRSTVTYNTI 483

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
           I    +    +EA E F++M   G+    VT++ ++D   K+ ++++   L E+ V  G 
Sbjct: 484 IDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGL 543

Query: 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348
           +P+ I ++ +   + + G+      +L+ M + G + ++V Y TL+  + KAG+  +A  
Sbjct: 544 QPNNITYNSILTHYCKQGNIKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALK 603

Query: 349 LFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL-NMC 407
           L   M   G+ P  K    +I+   +    +DAL L+  M E   P D + Y  +  ++C
Sbjct: 604 LLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALNLFREMTEVGEPPDALTYKIVFRSLC 663

Query: 408 ADIGLVEEA 416
              G ++EA
Sbjct: 664 RGGGPIKEA 672


>gi|297606902|ref|NP_001059180.2| Os07g0213300 [Oryza sativa Japonica Group]
 gi|215767816|dbj|BAH00045.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255677604|dbj|BAF21094.2| Os07g0213300 [Oryza sativa Japonica Group]
          Length = 677

 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 114/466 (24%), Positives = 212/466 (45%), Gaps = 14/466 (3%)

Query: 136 NTEEAFLRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMK 195
           N  E  LRA    P + T  N +    +   W+K+      +    + P + + +N+ + 
Sbjct: 67  NIMEDMLRAAIP-PTRTTYNNVINACGAAGNWKKALELCKKMTENGVGP-DLVTHNIVLS 124

Query: 196 SLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY--KTGL 253
           +L+ G Q+         M    +  D  T + II C  +     EAIE F  M   +T  
Sbjct: 125 ALKNGAQYSKAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKC 184

Query: 254 MPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRY 313
            PD VTY++I+  Y   G+VE   ++++  VA G KP+ +A++ L   +   G +     
Sbjct: 185 PPDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALA 244

Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYG 373
           +   +K  G++P++V Y +LL A G++ +P  AR +F++M ++   P++ +  ALI  YG
Sbjct: 245 IFNLIKKNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYG 304

Query: 374 KARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDN 433
            A   K+A+ L   M ++    D +  +TLL  C     +   E + E  + S     + 
Sbjct: 305 SAGMLKEAVGLLHEMEKDGIQPDVVSISTLLAACGRCRQITRIETILEAAR-SRGIDLNT 363

Query: 434 YSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGV 493
            +Y + +  Y S G+ + A+EL+  M E  V  + +    LI    K  +  + +R F  
Sbjct: 364 VAYNSGIKSYLSFGDYEKALELYTSMRESNVKPDAVTYNILISGSSKLGKYTESLRFFED 423

Query: 494 SIDRGVKPDDRLCGCLL-SVVSLCETSEDVGKVITCLQQAN--PKLVAFLNLIEDNSTGF 550
            +D  V     +   L+ S +   + SE      + ++++   P ++ +  LI+  + G 
Sbjct: 424 MVDSKVSSTKEVYSSLIYSYIKQGKLSE-AESTFSSMKKSGCFPDVLTYTTLIQAYNAG- 481

Query: 551 ENIKEEFRNVIKDTEVDARRP---FCNCLIDICRNRNLNERAHELL 593
              K  + ++ K+ EV+   P    C+ L++        ER  +L+
Sbjct: 482 GGWKRAW-DLFKEMEVNGIPPDAIICSSLMEAFNKGGEPERVLQLM 526



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 95/382 (24%), Positives = 177/382 (46%), Gaps = 15/382 (3%)

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           P + + Y   M S     Q +  + + + MV+  ++ + + Y++++       +  EA+ 
Sbjct: 185 PPDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALA 244

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
            F  + K GL PD V+Y+++L+ Y +S + E+   ++ +   +  KP+ ++++ L   +G
Sbjct: 245 IFNLIKKNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYG 304

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
            +G       +L EM+  G+QP++V  +TLL A G+  +     ++ +     G+  +  
Sbjct: 305 SAGMLKEAVGLLHEMEKDGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGIDLNTV 364

Query: 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
              + IK Y      + ALEL+  MRE+    D + YN L++  + +G   E+ R FEDM
Sbjct: 365 AYNSGIKSYLSFGDYEKALELYTSMRESNVKPDAVTYNILISGSSKLGKYTESLRFFEDM 424

Query: 424 KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL---GK 480
             S         Y++++  Y   G +  A   F  M + G   +V+  T LIQ     G 
Sbjct: 425 VDSKVSSTKEV-YSSLIYSYIKQGKLSEAESTFSSMKKSGCFPDVLTYTTLIQAYNAGGG 483

Query: 481 ARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDV--------GKVITCLQQA 532
            +R  DL +   V+   G+ PD  +C  L+   +     E V         K I   Q++
Sbjct: 484 WKRAWDLFKEMEVN---GIPPDAIICSSLMEAFNKGGEPERVLQLMEFMKKKSIPLNQKS 540

Query: 533 NPKLVAFLNLIEDNSTGFENIK 554
             +++A   +I D  T  E I+
Sbjct: 541 YFEIIASCTMIRDWKTASEMIE 562



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/360 (21%), Positives = 147/360 (40%), Gaps = 38/360 (10%)

Query: 177 IKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCN 236
           +K+Q+ +      Y + ++      Q      L  EM     + D   Y+++I    R  
Sbjct: 1   MKNQDNYCARNDIYGMMIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAG 60

Query: 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS 296
            +  AI   E M +  + P   TY+ +++    +G  ++ L L ++   +G  PD +  +
Sbjct: 61  QWRWAINIMEDMLRAAIPPTRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHN 120

Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA---------- 346
           ++         Y       + MK   V  +    N ++  + K G+ G A          
Sbjct: 121 IVLSALKNGAQYSKAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRER 180

Query: 347 ---------------------------RSLFDEMVESGLTPDEKTLTALIKIYGKARWAK 379
                                      +++FD MV  G+ P+     +L+  Y      +
Sbjct: 181 RTKCPPDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHR 240

Query: 380 DALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAM 439
           +AL ++  +++N    D + Y +LLN        E+A  +F  MK  + CKP+  SY A+
Sbjct: 241 EALAIFNLIKKNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMK-KNSCKPNKVSYNAL 299

Query: 440 LNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGV 499
           ++ YGS G +  A+ L  EM + G+  +V+  + L+   G+ R+I  +  +   +  RG+
Sbjct: 300 IDAYGSAGMLKEAVGLLHEMEKDGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGI 359



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 68/283 (24%), Positives = 135/283 (47%), Gaps = 3/283 (1%)

Query: 222 NITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYE 281
           N  Y  +I    R N  D+A   F  M +    PD   Y++++  ++++G+    +++ E
Sbjct: 11  NDIYGMMIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIME 70

Query: 282 RGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG 341
             + +   P    ++ +    G +G++     + ++M   GV P+LV +N +L A+    
Sbjct: 71  DMLRAAIPPTRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGA 130

Query: 342 KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE--NKWPMDFIL 399
           +   A S F+ M  + +T D  TL  +I    K     +A+EL+  MRE   K P D + 
Sbjct: 131 QYSKAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVT 190

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           Y ++++     G VE  + +F D+ +++  KP+  +Y ++L  Y S G    A+ +F  +
Sbjct: 191 YTSIMHSYCIYGQVENCKAIF-DLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLI 249

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            + G+  +++  T L+   G++ + +    VF        KP+
Sbjct: 250 KKNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPN 292



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 131/282 (46%), Gaps = 5/282 (1%)

Query: 185 METIFYNVTMKS-LRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           + T+ YN  +KS L FG   + +E L   M  + ++ D +TY+ +I+ + +   + E++ 
Sbjct: 361 LNTVAYNSGIKSYLSFGDYEKALE-LYTSMRESNVKPDAVTYNILISGSSKLGKYTESLR 419

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
           +FE M  + +   +  YS+++  Y K GK+ E  S +     SG  PD + ++ L + + 
Sbjct: 420 FFEDMVDSKVSSTKEVYSSLIYSYIKQGKLSEAESTFSSMKKSGCFPDVLTYTTLIQAYN 479

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
             G +     + +EM+  G+ P+ ++ ++L+EA  K G+P     L + M +  +  ++K
Sbjct: 480 AGGGWKRAWDLFKEMEVNGIPPDAIICSSLMEAFNKGGEPERVLQLMEFMKKKSIPLNQK 539

Query: 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
           +   +I      R  K A E+ E +  +   +     N +LN     G  E   +LF  M
Sbjct: 540 SYFEIIASCTMIRDWKTASEMIEYLDSSLSSISVGTLNHVLNFLGKCGKTENMMKLFYKM 599

Query: 424 KLSDYCKPDNYS-YTAMLNIYGSGGNVDNAIELFEEMSELGV 464
             S  C     S Y  +L      G     IE+ + M + GV
Sbjct: 600 VTS--CSTVGLSTYAVVLRNLLVVGKWRKYIEVLQWMEDSGV 639



 Score = 39.7 bits (91), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 38/168 (22%), Positives = 72/168 (42%), Gaps = 1/168 (0%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           W++++  F  ++  N  P + I  +  M++   G + + + QL   M    I L+  +Y 
Sbjct: 484 WKRAWDLFKEMEV-NGIPPDAIICSSLMEAFNKGGEPERVLQLMEFMKKKSIPLNQKSYF 542

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
            II        +  A E  E +  +       T + +L+   K GK E ++ L+ + V S
Sbjct: 543 EIIASCTMIRDWKTASEMIEYLDSSLSSISVGTLNHVLNFLGKCGKTENMMKLFYKMVTS 602

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLL 334
                   ++V+ +     G +     VLQ M+  GV P L ++  +L
Sbjct: 603 CSTVGLSTYAVVLRNLLVVGKWRKYIEVLQWMEDSGVHPTLYMFQNVL 650


>gi|384247929|gb|EIE21414.1| TPR-like protein [Coccomyxa subellipsoidea C-169]
          Length = 448

 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 142/282 (50%), Gaps = 1/282 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D  TY+TII+         +A+E    M   G++ +  TYSA+++V  K+ ++E  L +Y
Sbjct: 72  DVYTYTTIISQCGSHQQLRKALELVAEMRGHGVVCNVHTYSALMNVCIKANELELALDVY 131

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
            + +  G  P+ + +++L  + G+ G++     VL  ++  G +P +  YNT+L A  ++
Sbjct: 132 GQLLREGCTPNLVTYNILIDIHGKMGNWQEAVQVLDALEDQGTKPEVRTYNTILSACNRS 191

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G+P  A  +++ M+  G  P   T TALI  YGK    ++AL +++ M       + I Y
Sbjct: 192 GQPEHALRVYERMLADGAQPTATTYTALISAYGKTGKIEEALRIFQDMVRRGCERNVITY 251

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           ++L++ C   G  + A  L ++M   D CKP+  ++ A+L+    GG    A ++FE+M 
Sbjct: 252 SSLISACEKAGRWQLALELLDEMH-RDNCKPNTVTFNALLSACAQGGQWKAAQDVFEQMP 310

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
             G   + +    LI    +  +    ++       +G +PD
Sbjct: 311 SCGCKPDAVSYAILISAFDRGNQWCRALQALDEMQGQGHRPD 352



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/309 (25%), Positives = 147/309 (47%), Gaps = 8/309 (2%)

Query: 161 LNSLKFWQKSYFFFNWIKS----QNLFPMETIF-YNVTMKSLRFGRQFQLIEQLANEMVS 215
           L+ +    ++   F+W++S      L  +  ++ Y   +      +Q +   +L  EM  
Sbjct: 42  LHKVGLSNRASELFDWLRSLPDNHELAHLCDVYTYTTIISQCGSHQQLRKALELVAEMRG 101

Query: 216 NEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEE 275
           + +  +  TYS ++    + N  + A++ + ++ + G  P+ VTY+ ++D++ K G  +E
Sbjct: 102 HGVVCNVHTYSALMNVCIKANELELALDVYGQLLREGCTPNLVTYNILIDIHGKMGNWQE 161

Query: 276 VLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLE 335
            + + +     G KP+   ++ +      SG  +    V + M + G QP    Y  L+ 
Sbjct: 162 AVQVLDALEDQGTKPEVRTYNTILSACNRSGQPEHALRVYERMLADGAQPTATTYTALIS 221

Query: 336 AMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA-RWAKDALELWERMRENKWP 394
           A GK GK   A  +F +MV  G   +  T ++LI    KA RW + ALEL + M  +   
Sbjct: 222 AYGKTGKIEEALRIFQDMVRRGCERNVITYSSLISACEKAGRW-QLALELLDEMHRDNCK 280

Query: 395 MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIE 454
            + + +N LL+ CA  G  + A+ +FE M  S  CKPD  SY  +++ +  G     A++
Sbjct: 281 PNTVTFNALLSACAQGGQWKAAQDVFEQMP-SCGCKPDAVSYAILISAFDRGNQWCRALQ 339

Query: 455 LFEEMSELG 463
             +EM   G
Sbjct: 340 ALDEMQGQG 348



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 116/238 (48%), Gaps = 9/238 (3%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           I  ++  K   +    Q+++ L ++    E+     TY+TI++   R    + A+  +ER
Sbjct: 148 ILIDIHGKMGNWQEAVQVLDALEDQGTKPEVR----TYNTILSACNRSGQPEHALRVYER 203

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M   G  P   TY+A++  Y K+GK+EE L +++  V  G + + I +S L     ++G 
Sbjct: 204 MLADGAQPTATTYTALISAYGKTGKIEEALRIFQDMVRRGCERNVITYSSLISACEKAGR 263

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
           +     +L EM     +PN V +N LL A  + G+   A+ +F++M   G  PD  +   
Sbjct: 264 WQLALELLDEMHRDNCKPNTVTFNALLSACAQGGQWKAAQDVFEQMPSCGCKPDAVSYAI 323

Query: 368 LIKIYGKA-RWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE---EAERLFE 421
           LI  + +  +W + AL+  + M+      D  +YN ++      G++    +A ++F+
Sbjct: 324 LISAFDRGNQWCR-ALQALDEMQGQGHRPDVGVYNVVIEALTRSGVLSAQLKAAQIFQ 380



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 79/179 (44%), Gaps = 13/179 (7%)

Query: 332 TLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIY---------GKARWAKDAL 382
            LL+ + K G    A  LFD +      PD   L  L  +Y         G  +  + AL
Sbjct: 37  ALLKELHKVGLSNRASELFDWLRS---LPDNHELAHLCDVYTYTTIISQCGSHQQLRKAL 93

Query: 383 ELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNI 442
           EL   MR +    +   Y+ L+N+C     +E A  ++  + L + C P+  +Y  +++I
Sbjct: 94  ELVAEMRGHGVVCNVHTYSALMNVCIKANELELALDVYGQL-LREGCTPNLVTYNILIDI 152

Query: 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
           +G  GN   A+++ + + + G    V     ++    ++ + +  +RV+   +  G +P
Sbjct: 153 HGKMGNWQEAVQVLDALEDQGTKPEVRTYNTILSACNRSGQPEHALRVYERMLADGAQP 211



 Score = 44.7 bits (104), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 72/157 (45%), Gaps = 7/157 (4%)

Query: 361 DEKTLTALIKIYGKARWAKDALELWERMR------ENKWPMDFILYNTLLNMCADIGLVE 414
           D + L AL+K   K   +  A EL++ +R      E     D   Y T+++ C     + 
Sbjct: 31  DSRALAALLKELHKVGLSNRASELFDWLRSLPDNHELAHLCDVYTYTTIISQCGSHQQLR 90

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
           +A  L  +M+       + ++Y+A++N+      ++ A++++ ++   G   N++    L
Sbjct: 91  KALELVAEMR-GHGVVCNVHTYSALMNVCIKANELELALDVYGQLLREGCTPNLVTYNIL 149

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
           I   GK     + V+V     D+G KP+ R    +LS
Sbjct: 150 IDIHGKMGNWQEAVQVLDALEDQGTKPEVRTYNTILS 186



 Score = 44.3 bits (103), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 23/105 (21%), Positives = 50/105 (47%), Gaps = 1/105 (0%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           WQ +    + +   N  P  T+ +N  + +   G Q++  + +  +M S   + D ++Y+
Sbjct: 264 WQLALELLDEMHRDNCKP-NTVTFNALLSACAQGGQWKAAQDVFEQMPSCGCKPDAVSYA 322

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG 271
            +I+   R N +  A++  + M   G  PD   Y+ +++   +SG
Sbjct: 323 ILISAFDRGNQWCRALQALDEMQGQGHRPDVGVYNVVIEALTRSG 367


>gi|410110089|gb|AFV61124.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           macropoda]
          Length = 427

 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 91/295 (30%), Positives = 150/295 (50%), Gaps = 7/295 (2%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L +EM    +  D  TYST+IT   +  LFD A+ W ++M +  +  D V YS ++++  
Sbjct: 3   LFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSR 62

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           K     + +S++ R   SG+ PD +A++ +  +FG++  +   R ++ EMK+ GV PN  
Sbjct: 63  KLCDYSKAISIFSRLKKSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTX 122

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            Y+TLL    +  K   A S+F EM E     D  T   +I +YG+   AK+A +L+  M
Sbjct: 123 SYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM 182

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
           R+     + + YNTLL +  D  L  EA  LF  M+  +  + +  +Y +M  IYG    
Sbjct: 183 RKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKN-IEQNVVTYNSMXMIYGKTLE 241

Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF------GVSIDR 497
            + A  L +EM   G+  N +  + +I   GK  ++D    +F      G+ ID+
Sbjct: 242 HEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQ 296



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/367 (22%), Positives = 169/367 (46%), Gaps = 6/367 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K     P + + YN  +      + F+    L  EM +  +  +  +YS
Sbjct: 67  YSKAISIFSRLKKSGFTP-DLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTXSYS 125

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY + G  +E   L+      
Sbjct: 126 TLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 185

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   ++ N+V YN++    GK  +   A
Sbjct: 186 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMXMIYGKTLEHEKA 245

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R +   +D IL+ T++  
Sbjct: 246 NNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQILFQTMIVA 305

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K     +PDN      ++I    G ++ A  +F +  + G   
Sbjct: 306 YERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVK 360

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           ++     +I  L K ++  ++V VF      G  PD  +   +L+     +  +    V 
Sbjct: 361 DITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVY 420

Query: 527 TCLQQAN 533
             +Q+  
Sbjct: 421 MEMQEVG 427



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 98/220 (44%), Gaps = 1/220 (0%)

Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYG 373
           +  EM+   + P+   Y+TL+   GK G    A S   +M +  +  D    + LI++  
Sbjct: 3   LFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSR 62

Query: 374 KARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDN 433
           K      A+ ++ R++++ +  D + YN ++N+     L  EA  L  +MK +    P+ 
Sbjct: 63  KLCDYSKAISIFSRLKKSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAG-VMPNT 121

Query: 434 YSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGV 493
            SY+ +L +Y        A+ +F EM E+   +++  C  +I   G+     +  ++F  
Sbjct: 122 XSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWG 181

Query: 494 SIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN 533
               G++P+      LL V    E   +   +   +Q+ N
Sbjct: 182 MRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKN 221


>gi|302760727|ref|XP_002963786.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
 gi|300169054|gb|EFJ35657.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
          Length = 432

 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 153/311 (49%), Gaps = 3/311 (0%)

Query: 183 FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
            P  ++ YNV ++             L  EM    ++ ++ T S I+    RC    +A+
Sbjct: 21  LPASSVTYNVLIRGFCNASDLDAAFSLLREMDVEGMQCNDRTTSIILQGLCRCGRVAQAL 80

Query: 243 EWFERMYKTG-LMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG-WKPDPIAFSVLGK 300
           E F+   +     PD V+Y+ +++   K G+V+    L+ + VA+G  +P+   ++ L  
Sbjct: 81  EHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVD 140

Query: 301 MFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTP 360
              +    D  R V+ E +     P++V YNTL+ A+ + G+   A + F +M E G  P
Sbjct: 141 GLCKQDRLDAARAVITEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVP 200

Query: 361 DEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLF 420
              +  A+I    +AR   DALE++  M +  +  + + Y+ +++       ++EA++L 
Sbjct: 201 TLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLL 260

Query: 421 EDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK 480
           + M +S+ C+PD  +YT ++  + + G +D+A+ L   M   G   +V+  T +I  L K
Sbjct: 261 DRM-VSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCK 319

Query: 481 ARRIDDLVRVF 491
             R+DD   +F
Sbjct: 320 VGRVDDAHEIF 330



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 67/274 (24%), Positives = 122/274 (44%), Gaps = 4/274 (1%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN  +  L    +      +  E    +   D +TY+T++    +    DEA+  F +M 
Sbjct: 135 YNALVDGLCKQDRLDAARAVITEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMT 194

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
           + G +P  V+++AI+    ++ ++ + L ++   +   + P+ + +SV+     +S   D
Sbjct: 195 EEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLD 254

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
             + +L  M S G +P+LV Y  L+     AG+   A  L   MV  G  PD  T T +I
Sbjct: 255 EAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVI 314

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
               K     DA E++  +  NK   + + Y+ L+        V+E  ++  +M     C
Sbjct: 315 DKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGGKVMREMA----C 370

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           +P+  +Y  M+         + A  +F EMSE G
Sbjct: 371 RPNVVTYNTMIWGLSMVDRNEEAYGMFREMSECG 404



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 91/195 (46%), Gaps = 4/195 (2%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           FN +  ++  P   + Y+V +  L    Q    +QL + MVS     D + Y+ ++    
Sbjct: 225 FNEMIDRDFHP-NLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFS 283

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
                D A+    RM   G +PD VTY+ ++D   K G+V++   ++   VA+   P+ +
Sbjct: 284 AAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVV 343

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
            +S L   +  +   D    V++EM     +PN+V YNT++  +    +   A  +F EM
Sbjct: 344 TYSALIGGYCRASRVDEGGKVMREM---ACRPNVVTYNTMIWGLSMVDRNEEAYGMFREM 400

Query: 354 VESGLTPDEKTLTAL 368
            E G  PD +T   L
Sbjct: 401 SECGFVPDARTYRGL 415


>gi|414888270|tpg|DAA64284.1| TPA: hypothetical protein ZEAMMB73_921256 [Zea mays]
          Length = 890

 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 117/484 (24%), Positives = 199/484 (41%), Gaps = 44/484 (9%)

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
           E L + M+   +  D ++Y  I+           A E F  M  TG   D   Y  +++ 
Sbjct: 293 EMLLHTMLEAGVSPDTVSYRHIVDAFASAGNLSRAAELFSEMAATGHTADASAYLGLMEA 352

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
           + + G   + +++  +  A G  P    + VL  ++G  G +DG+R + +EM++  V P+
Sbjct: 353 HTRVGATADAVAVLRQMQADGCAPTAATYRVLLDLYGRQGRFDGVRQLFREMRT-AVPPD 411

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
              YN L    G  G       LF +M+++G+ PD  T   ++   G      DA E+ E
Sbjct: 412 TATYNVLFRVFGDGGFFKEVVELFHDMLKTGVQPDMVTCENVMAACGHGGLHGDAREVLE 471

Query: 387 RM-RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445
            M RE   P     Y  L+       + EEA   F +M       P   +Y A+   Y  
Sbjct: 472 YMTREGMVPTA-DAYTGLVEALGHAAMYEEAYVAF-NMMTEIGSLPTLETYNALAFAYAR 529

Query: 446 GGNVDNAIELFEEMS-ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR 504
           GG    A  +F  MS   G+  +      LI+   +  R+DD V+ +         PD+R
Sbjct: 530 GGLFQEAEAIFSRMSNNAGIQKSKDSFDALIEAYCQGSRLDDAVKAYMEMRKSRFNPDER 589

Query: 505 LCGCLLSVVSLCETSEDVGKVITCLQQA--NPKLVAF----------------LNLIEDN 546
               +L+   +    ++  +    LQ +   P ++A+                 +L+E+ 
Sbjct: 590 SLEGVLNAYCIAGVIDESKEQFEELQSSVTMPSVIAYCMMLSLYARNDRWTDAYDLLEEM 649

Query: 547 STGFEN---------IKEEFRN---------VIKDTEV---DARRPFCNCLIDICRNRNL 585
            T   +         IK E+ +         V++++ +   D    F N L+ +      
Sbjct: 650 KTNRASSTHQVIASLIKGEYDDSSNWQMVEYVLENSTMEGCDYSFRFFNALLGVLWWFGQ 709

Query: 586 NERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAKIVLREEV 645
             RA  +L     +GL+P L+  T   WSLDV  +S+G A  A+  W+  L   ++ +E 
Sbjct: 710 KGRAARVLDQAVKFGLFPELYRDTKLVWSLDVHRMSMGGALVAVSVWLNKLYDRLVEDED 769

Query: 646 LPQL 649
           LPQL
Sbjct: 770 LPQL 773



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/345 (22%), Positives = 148/345 (42%), Gaps = 15/345 (4%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDN---I 223
           WQ+S   F +++ Q+    +   + + +  L  GRQ   +     E V +++  ++   +
Sbjct: 141 WQRSLRLFKYMQRQSWCRPDEHIHAIVIGVL--GRQGPALLDKCLE-VFHDLPAESRTAL 197

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK----VEEVLSL 279
           +Y+++I    R  L +EA    ++M  TG+ P   TY+ +L   A++       + +L L
Sbjct: 198 SYTSLIAAYARNALHEEARALLDQMKATGVAPTAATYNTVLAACARATDPPVPFDMLLGL 257

Query: 280 Y---ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA 336
           +       +   +PD   ++ L          D    +L  M   GV P+ V Y  +++A
Sbjct: 258 FAEMRHDASPSVRPDLTTYNTLLAAAAVRSLADQSEMLLHTMLEAGVSPDTVSYRHIVDA 317

Query: 337 MGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMD 396
              AG    A  LF EM  +G T D      L++ + +     DA+ +  +M+ +     
Sbjct: 318 FASAGNLSRAAELFSEMAATGHTADASAYLGLMEAHTRVGATADAVAVLRQMQADGCAPT 377

Query: 397 FILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELF 456
              Y  LL++    G  +   +LF +M+ +    PD  +Y  +  ++G GG     +ELF
Sbjct: 378 AATYRVLLDLYGRQGRFDGVRQLFREMRTA--VPPDTATYNVLFRVFGDGGFFKEVVELF 435

Query: 457 EEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
            +M + GV  +++ C  ++   G      D   V       G+ P
Sbjct: 436 HDMLKTGVQPDMVTCENVMAACGHGGLHGDAREVLEYMTREGMVP 480



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 56/277 (20%), Positives = 111/277 (40%), Gaps = 37/277 (13%)

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           P +T  YNV  +    G  F+ + +L ++M+   ++ D +T   ++       L  +A E
Sbjct: 409 PPDTATYNVLFRVFGDGGFFKEVVELFHDMLKTGVQPDMVTCENVMAACGHGGLHGDARE 468

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
             E M + G++P    Y+ +++    +   EE    +      G  P    ++ L   + 
Sbjct: 469 VLEYMTREGMVPTADAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTLETYNALAFAYA 528

Query: 304 ESGDYDGIRYVLQEMKS-LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
             G +     +   M +  G+Q +   ++ L+EA  +  +   A   + EM +S   PDE
Sbjct: 529 RGGLFQEAEAIFSRMSNNAGIQKSKDSFDALIEAYCQGSRLDDAVKAYMEMRKSRFNPDE 588

Query: 363 KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED 422
           ++L  ++  Y  A                                   G+++E++  FE+
Sbjct: 589 RSLEGVLNAYCIA-----------------------------------GVIDESKEQFEE 613

Query: 423 MKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           ++ S    P   +Y  ML++Y       +A +L EEM
Sbjct: 614 LQ-SSVTMPSVIAYCMMLSLYARNDRWTDAYDLLEEM 649



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 40/247 (16%)

Query: 161 LNSLKFWQKSYFFFNWIKSQNLFP-METIFYNVTMKSLRFGRQFQLIEQLANEMVSNE-I 218
           L     ++++Y  FN +      P +ET  YN    +   G  FQ  E + + M +N  I
Sbjct: 492 LGHAAMYEEAYVAFNMMTEIGSLPTLET--YNALAFAYARGGLFQEAEAIFSRMSNNAGI 549

Query: 219 ELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS 278
           +    ++  +I    + +  D+A++ +  M K+   PDE +   +L+ Y  +G ++E   
Sbjct: 550 QKSKDSFDALIEAYCQGSRLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCIAGVIDESKE 609

Query: 279 LYERGVASGWKPDPIAFSVLGKMFGES------------------------------GDY 308
            +E   +S   P  IA+ ++  ++  +                              G+Y
Sbjct: 610 QFEELQSSVTMPSVIAYCMMLSLYARNDRWTDAYDLLEEMKTNRASSTHQVIASLIKGEY 669

Query: 309 DG------IRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
           D       + YVL+     G   +   +N LL  +   G+ G A  + D+ V+ GL P+ 
Sbjct: 670 DDSSNWQMVEYVLENSTMEGCDYSFRFFNALLGVLWWFGQKGRAARVLDQAVKFGLFPEL 729

Query: 363 KTLTALI 369
              T L+
Sbjct: 730 YRDTKLV 736


>gi|222636666|gb|EEE66798.1| hypothetical protein OsJ_23544 [Oryza sativa Japonica Group]
          Length = 665

 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 96/366 (26%), Positives = 170/366 (46%), Gaps = 5/366 (1%)

Query: 136 NTEEAFLRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMK 195
           N  E  LRA    P + T  N +    +   W+K+      +    + P + + +N+ + 
Sbjct: 67  NIMEDMLRAAIP-PTRTTYNNVINACGAAGNWKKALELCKKMTENGVGP-DLVTHNIVLS 124

Query: 196 SLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY--KTGL 253
           +L+ G Q+         M    +  D  T + II C  +     EAIE F  M   +T  
Sbjct: 125 ALKNGAQYSKAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKC 184

Query: 254 MPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRY 313
            PD VTY++I+  Y   G+VE   ++++  VA G KP+ +A++ L   +   G +     
Sbjct: 185 PPDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALA 244

Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYG 373
           +   +K  G++P++V Y +LL A G++ +P  AR +F++M ++   P++ +  ALI  YG
Sbjct: 245 IFNLIKKNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYG 304

Query: 374 KARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDN 433
            A   K+A+ L   M ++    D +  +TLL  C     +   E + E  + S     + 
Sbjct: 305 SAGMLKEAVGLLHEMEKDGIQPDVVSISTLLAACGRCRQITRIETILEAAR-SRGIDLNT 363

Query: 434 YSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGV 493
            +Y + +  Y S G+ + A+EL+  M E  V  + +    LI    K  +  + +R F  
Sbjct: 364 VAYNSGIKSYLSFGDYEKALELYTSMRESNVKPDAVTYNILISGSSKLGKYTESLRFFED 423

Query: 494 SIDRGV 499
            +D  V
Sbjct: 424 MVDSKV 429



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 154/320 (48%), Gaps = 22/320 (6%)

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           P + + Y   M S     Q +  + + + MV+  ++ + + Y++++       +  EA+ 
Sbjct: 185 PPDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALA 244

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
            F  + K GL PD V+Y+++L+ Y +S + E+   ++ +   +  KP+ ++++ L   +G
Sbjct: 245 IFNLIKKNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYG 304

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
            +G       +L EM+  G+QP++V  +TLL A G+  +     ++ +     G+  +  
Sbjct: 305 SAGMLKEAVGLLHEMEKDGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGIDLNTV 364

Query: 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
              + IK Y      + ALEL+  MRE+    D + YN L++  + +G   E+ R FEDM
Sbjct: 365 AYNSGIKSYLSFGDYEKALELYTSMRESNVKPDAVTYNILISGSSKLGKYTESLRFFEDM 424

Query: 424 -----------KLSDY-----------CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461
                      KLS+            C PD  +YT ++  Y +GG    A +LF+EM  
Sbjct: 425 VDSKVSSTKEGKLSEAESTFSSMKKSGCFPDVLTYTTLIQAYNAGGGWKRAWDLFKEMEV 484

Query: 462 LGVAINVMGCTCLIQCLGKA 481
            G+  + + C+ L++   K 
Sbjct: 485 NGIPPDAIICSSLMEAFNKG 504



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/360 (21%), Positives = 147/360 (40%), Gaps = 38/360 (10%)

Query: 177 IKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCN 236
           +K+Q+ +      Y + ++      Q      L  EM     + D   Y+++I    R  
Sbjct: 1   MKNQDNYCARNDIYGMMIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAG 60

Query: 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS 296
            +  AI   E M +  + P   TY+ +++    +G  ++ L L ++   +G  PD +  +
Sbjct: 61  QWRWAINIMEDMLRAAIPPTRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHN 120

Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA---------- 346
           ++         Y       + MK   V  +    N ++  + K G+ G A          
Sbjct: 121 IVLSALKNGAQYSKAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRER 180

Query: 347 ---------------------------RSLFDEMVESGLTPDEKTLTALIKIYGKARWAK 379
                                      +++FD MV  G+ P+     +L+  Y      +
Sbjct: 181 RTKCPPDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHR 240

Query: 380 DALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAM 439
           +AL ++  +++N    D + Y +LLN        E+A  +F  MK  + CKP+  SY A+
Sbjct: 241 EALAIFNLIKKNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMK-KNSCKPNKVSYNAL 299

Query: 440 LNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGV 499
           ++ YGS G +  A+ L  EM + G+  +V+  + L+   G+ R+I  +  +   +  RG+
Sbjct: 300 IDAYGSAGMLKEAVGLLHEMEKDGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGI 359



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 68/283 (24%), Positives = 135/283 (47%), Gaps = 3/283 (1%)

Query: 222 NITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYE 281
           N  Y  +I    R N  D+A   F  M +    PD   Y++++  ++++G+    +++ E
Sbjct: 11  NDIYGMMIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIME 70

Query: 282 RGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG 341
             + +   P    ++ +    G +G++     + ++M   GV P+LV +N +L A+    
Sbjct: 71  DMLRAAIPPTRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGA 130

Query: 342 KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE--NKWPMDFIL 399
           +   A S F+ M  + +T D  TL  +I    K     +A+EL+  MRE   K P D + 
Sbjct: 131 QYSKAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVT 190

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           Y ++++     G VE  + +F D+ +++  KP+  +Y ++L  Y S G    A+ +F  +
Sbjct: 191 YTSIMHSYCIYGQVENCKAIF-DLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLI 249

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            + G+  +++  T L+   G++ + +    VF        KP+
Sbjct: 250 KKNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPN 292



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 121/288 (42%), Gaps = 26/288 (9%)

Query: 201 RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTY 260
           RQ   IE +     S  I+L+ + Y++ I        +++A+E +  M ++ + PD VTY
Sbjct: 342 RQITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGDYEKALELYTSMRESNVKPDAVTY 401

Query: 261 SAILDVYAKSGKVEEVLSLYERGV-----------------------ASGWKPDPIAFSV 297
           + ++   +K GK  E L  +E  V                        SG  PD + ++ 
Sbjct: 402 NILISGSSKLGKYTESLRFFEDMVDSKVSSTKEGKLSEAESTFSSMKKSGCFPDVLTYTT 461

Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
           L + +   G +     + +EM+  G+ P+ ++ ++L+EA  K G+P     L + M +  
Sbjct: 462 LIQAYNAGGGWKRAWDLFKEMEVNGIPPDAIICSSLMEAFNKGGEPERVLQLMEFMKKKS 521

Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417
           +  ++K+   +I      R  K A E+ E +  +   +     N +LN     G  E   
Sbjct: 522 IPLNQKSYFEIIASCTMIRDWKTASEMIEYLDSSLSSISVGTLNHVLNFLGKCGKTENMM 581

Query: 418 RLFEDMKLSDYCKPDNYS-YTAMLNIYGSGGNVDNAIELFEEMSELGV 464
           +LF  M  S  C     S Y  +L      G     IE+ + M + GV
Sbjct: 582 KLFYKMVTS--CSTVGLSTYAVVLRNLLVVGKWRKYIEVLQWMEDSGV 627



 Score = 40.0 bits (92), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 38/168 (22%), Positives = 72/168 (42%), Gaps = 1/168 (0%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           W++++  F  ++  N  P + I  +  M++   G + + + QL   M    I L+  +Y 
Sbjct: 472 WKRAWDLFKEMEV-NGIPPDAIICSSLMEAFNKGGEPERVLQLMEFMKKKSIPLNQKSYF 530

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
            II        +  A E  E +  +       T + +L+   K GK E ++ L+ + V S
Sbjct: 531 EIIASCTMIRDWKTASEMIEYLDSSLSSISVGTLNHVLNFLGKCGKTENMMKLFYKMVTS 590

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLL 334
                   ++V+ +     G +     VLQ M+  GV P L ++  +L
Sbjct: 591 CSTVGLSTYAVVLRNLLVVGKWRKYIEVLQWMEDSGVHPTLYMFQNVL 638


>gi|224130936|ref|XP_002320961.1| predicted protein [Populus trichocarpa]
 gi|222861734|gb|EEE99276.1| predicted protein [Populus trichocarpa]
          Length = 474

 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 89/307 (28%), Positives = 159/307 (51%), Gaps = 4/307 (1%)

Query: 197 LRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPD 256
           +R G  ++ +  L+ E+    IE D  + S +I C    +  D  +    ++ K GL P 
Sbjct: 73  VRMG-HYETVVYLSKEIEFLGIEQDIHSLSILINCFCHLHRVDFGLSVLSKILKLGLEPS 131

Query: 257 EVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQ 316
            VT++ +L+     GK+++V+ LY+  +  G +P+   ++V+     +SG  +     L+
Sbjct: 132 IVTFTTLLNGLCMEGKMDQVMMLYDDMLVRGLQPNVYTYNVIINSLSKSGKANEALGFLK 191

Query: 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
           +M+ +G  PN+V Y+TL++     G+   ARS+FD MV  G TP+  T T+L+  Y K  
Sbjct: 192 QMEKVGCVPNVVNYSTLIDGYCLRGQMDEARSVFDLMVSKGCTPNVYTYTSLMNGYCKIE 251

Query: 377 WAKDALELW-ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYS 435
             ++A++L  E +R+   P D + + T+++     G    A++LF  +    +  P+  +
Sbjct: 252 RIEEAVQLLDETLRKGLVP-DIVTFTTIISGLCRAGRPLAAQQLFRYICAHGH-TPNIMT 309

Query: 436 YTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSI 495
           Y  +L+     GN++ A  LF+EM    V  N++  T LI  L K  +I D   +F   I
Sbjct: 310 YGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCKCGKIKDGKELFSRLI 369

Query: 496 DRGVKPD 502
           D G+KP+
Sbjct: 370 DEGLKPN 376



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 133/258 (51%), Gaps = 1/258 (0%)

Query: 206 IEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
           +  L ++M+   ++ +  TY+ II    +    +EA+ + ++M K G +P+ V YS ++D
Sbjct: 151 VMMLYDDMLVRGLQPNVYTYNVIINSLSKSGKANEALGFLKQMEKVGCVPNVVNYSTLID 210

Query: 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325
            Y   G+++E  S+++  V+ G  P+   ++ L   + +    +    +L E    G+ P
Sbjct: 211 GYCLRGQMDEARSVFDLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVP 270

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
           ++V + T++  + +AG+P  A+ LF  +   G TP+  T   L+    K    ++A  L+
Sbjct: 271 DIVTFTTIISGLCRAGRPLAAQQLFRYICAHGHTPNIMTYGVLLDGLCKHGNLEEAFALF 330

Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445
           + M+ +    + ++Y  L++     G +++ + LF  + + +  KP+ Y+YTA++     
Sbjct: 331 QEMQRSTVKPNLVIYTILIDSLCKCGKIKDGKELFSRL-IDEGLKPNVYTYTALVGALCK 389

Query: 446 GGNVDNAIELFEEMSELG 463
            G +  A +LF +M E G
Sbjct: 390 EGLIIEAHKLFRKMEEDG 407



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 112/243 (46%), Gaps = 1/243 (0%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           + YST+I         DEA   F+ M   G  P+  TY+++++ Y K  ++EE + L + 
Sbjct: 203 VNYSTLIDGYCLRGQMDEARSVFDLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDE 262

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
            +  G  PD + F+ +      +G     + + + + + G  PN++ Y  LL+ + K G 
Sbjct: 263 TLRKGLVPDIVTFTTIISGLCRAGRPLAAQQLFRYICAHGHTPNIMTYGVLLDGLCKHGN 322

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
              A +LF EM  S + P+    T LI    K    KD  EL+ R+ +     +   Y  
Sbjct: 323 LEEAFALFQEMQRSTVKPNLVIYTILIDSLCKCGKIKDGKELFSRLIDEGLKPNVYTYTA 382

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
           L+      GL+ EA +LF  M+  D C PD  +Y  ++  +    +   A +L EEM   
Sbjct: 383 LVGALCKEGLIIEAHKLFRKME-EDGCTPDKCAYNVIIQGFLQHKDPSMARQLVEEMVNR 441

Query: 463 GVA 465
           G +
Sbjct: 442 GFS 444



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 147/310 (47%), Gaps = 7/310 (2%)

Query: 239 DEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
           D+A+  F  M     +P  V +S +     + G  E V+ L +     G + D  + S+L
Sbjct: 44  DDALASFRLMLLRKPLPCIVEFSKLFSSIVRMGHYETVVYLSKEIEFLGIEQDIHSLSIL 103

Query: 299 GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
              F      D    VL ++  LG++P++V + TLL  +   GK      L+D+M+  GL
Sbjct: 104 INCFCHLHRVDFGLSVLSKILKLGLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVRGL 163

Query: 359 TPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAER 418
            P+  T   +I    K+  A +AL   ++M +     + + Y+TL++     G ++EA  
Sbjct: 164 QPNVYTYNVIINSLSKSGKANEALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEARS 223

Query: 419 LFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL 478
           +F D+ +S  C P+ Y+YT+++N Y     ++ A++L +E    G+  +++  T +I  L
Sbjct: 224 VF-DLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTIISGL 282

Query: 479 GKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETS--EDVGKVITCLQQAN--P 534
            +A R     ++F      G  P+    G LL    LC+    E+   +   +Q++   P
Sbjct: 283 CRAGRPLAAQQLFRYICAHGHTPNIMTYGVLLD--GLCKHGNLEEAFALFQEMQRSTVKP 340

Query: 535 KLVAFLNLIE 544
            LV +  LI+
Sbjct: 341 NLVIYTILID 350



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 98/193 (50%)

Query: 213 MVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK 272
           MVS     +  TY++++    +    +EA++  +   + GL+PD VT++ I+    ++G+
Sbjct: 228 MVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTIISGLCRAGR 287

Query: 273 VEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNT 332
                 L+    A G  P+ + + VL     + G+ +    + QEM+   V+PNLV+Y  
Sbjct: 288 PLAAQQLFRYICAHGHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTI 347

Query: 333 LLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENK 392
           L++++ K GK    + LF  +++ GL P+  T TAL+    K     +A +L+ +M E+ 
Sbjct: 348 LIDSLCKCGKIKDGKELFSRLIDEGLKPNVYTYTALVGALCKEGLIIEAHKLFRKMEEDG 407

Query: 393 WPMDFILYNTLLN 405
              D   YN ++ 
Sbjct: 408 CTPDKCAYNVIIQ 420



 Score = 75.9 bits (185), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 89/189 (47%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           QL +E +   +  D +T++TII+   R      A + F  +   G  P+ +TY  +LD  
Sbjct: 258 QLLDETLRKGLVPDIVTFTTIISGLCRAGRPLAAQQLFRYICAHGHTPNIMTYGVLLDGL 317

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            K G +EE  +L++    S  KP+ + +++L     + G     + +   +   G++PN+
Sbjct: 318 CKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCKCGKIKDGKELFSRLIDEGLKPNV 377

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
             Y  L+ A+ K G    A  LF +M E G TPD+     +I+ + + +    A +L E 
Sbjct: 378 YTYTALVGALCKEGLIIEAHKLFRKMEEDGCTPDKCAYNVIIQGFLQHKDPSMARQLVEE 437

Query: 388 MRENKWPMD 396
           M    +  D
Sbjct: 438 MVNRGFSAD 446



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 84/185 (45%), Gaps = 1/185 (0%)

Query: 180 QNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFD 239
           + L P    F  +     R GR     +QL   + ++    + +TY  ++    +    +
Sbjct: 266 KGLVPDIVTFTTIISGLCRAGRPLA-AQQLFRYICAHGHTPNIMTYGVLLDGLCKHGNLE 324

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           EA   F+ M ++ + P+ V Y+ ++D   K GK+++   L+ R +  G KP+   ++ L 
Sbjct: 325 EAFALFQEMQRSTVKPNLVIYTILIDSLCKCGKIKDGKELFSRLIDEGLKPNVYTYTALV 384

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
               + G       + ++M+  G  P+   YN +++   +   P +AR L +EMV  G +
Sbjct: 385 GALCKEGLIIEAHKLFRKMEEDGCTPDKCAYNVIIQGFLQHKDPSMARQLVEEMVNRGFS 444

Query: 360 PDEKT 364
            D  T
Sbjct: 445 ADAAT 449


>gi|356552005|ref|XP_003544362.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g09680-like [Glycine max]
          Length = 509

 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 98/341 (28%), Positives = 160/341 (46%), Gaps = 3/341 (0%)

Query: 183 FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
           +P    F+NV M              + +E+    +    ++++T+I+   +    +E  
Sbjct: 138 YPPNFFFFNVLMHGFCKVGGVGSARLVFDEIPKRGLRPTVVSFNTLISGCCKAGAVEEGF 197

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
                M    + PD  T+SA+++   K G+++E   L++     G  P+ + F+VL    
Sbjct: 198 RLKGVMESERVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGKGLVPNGVTFTVLIDGQ 257

Query: 303 GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
            + G  D      Q M + GV+P+LV YN L+  + K G    AR L +EM  SGL PD 
Sbjct: 258 CKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMSASGLRPDR 317

Query: 363 KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN-MCADIGLVEEAERLFE 421
            T T LI    K    + ALE+  RM E    +D + +  L++ +C D G V +AER+  
Sbjct: 318 ITFTTLIDGCCKYGDMESALEIKRRMVEEGIELDDVAFTVLISGLCRD-GRVHDAERMLR 376

Query: 422 DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
           DM LS   KPD+ +YT +++ +   GNV    +L +EM   G    V+    L+  L K 
Sbjct: 377 DM-LSAGFKPDDPTYTMVVDCFCKKGNVXMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQ 435

Query: 482 RRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDV 522
            ++ +   +    ++ GV P+D     LL   S   +S DV
Sbjct: 436 GQVKNAKMLLDAMLNVGVAPNDITYNILLEGHSKHGSSVDV 476


>gi|225424122|ref|XP_002280156.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Vitis vinifera]
          Length = 718

 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 91/313 (29%), Positives = 158/313 (50%), Gaps = 4/313 (1%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           K++  F+ ++S  LFP   + YN  +  L    + ++ +QL  EM++  I  D +TY+ +
Sbjct: 392 KAFLLFDELRSIYLFP-TIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTIL 450

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
           +  + +      A E+F+ M   GL  D   Y+  +    K G      SL E  +A G+
Sbjct: 451 VNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGF 510

Query: 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348
            PD I ++V+     + G+ +    +LQ+M S GV P+ V Y +++ A  + G+    R 
Sbjct: 511 PPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGRE 570

Query: 349 LFDEMVESGLTPDEKTLTALIKIY-GKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
           +F EM+  GLTP   T T LI  + GK R  + A   +  M+E     + I YN+L+N  
Sbjct: 571 IFYEMLSKGLTPSVVTYTVLIHGHAGKGRLER-AFIYFSEMQEKGILPNVITYNSLINGL 629

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
             +  +++A   F +M +     P+ YSYT ++N   + GN   A+ L+++M + GV  +
Sbjct: 630 CKVRRMDQAYNFFAEM-VEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQPD 688

Query: 468 VMGCTCLIQCLGK 480
               + L++ LGK
Sbjct: 689 SCTHSALLKQLGK 701



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 90/385 (23%), Positives = 161/385 (41%), Gaps = 71/385 (18%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           + YNV +  L    +F+  + L  EM+   +++   TY+ +I       +  EA+   E 
Sbjct: 270 VTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEE 329

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M   G  P   TY++ +    K G++ + +      +A+   PD ++++ L   +   G+
Sbjct: 330 MVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGN 389

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
                 +  E++S+ + P +V YNTLL+ + + G+  +A+ L  EM+  G+ PD  T T 
Sbjct: 390 LMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTI 449

Query: 368 LI---------------------------------KIYGKARWAKD--ALELWERMRENK 392
           L+                                 +I G+ +      A  L E M    
Sbjct: 450 LVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKG 509

Query: 393 WPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN----------- 441
           +P D I+YN +++    +G +EEA  L + M +SD   PD  +YT++++           
Sbjct: 510 FPPDLIIYNVVVDGLCKLGNLEEASELLQKM-VSDGVIPDYVTYTSIIHAHLENGRLRKG 568

Query: 442 ----------------------IYGSGGN--VDNAIELFEEMSELGVAINVMGCTCLIQC 477
                                 I+G  G   ++ A   F EM E G+  NV+    LI  
Sbjct: 569 REIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLING 628

Query: 478 LGKARRIDDLVRVFGVSIDRGVKPD 502
           L K RR+D     F   +++G+ P+
Sbjct: 629 LCKVRRMDQAYNFFAEMVEKGIFPN 653



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 122/530 (23%), Positives = 224/530 (42%), Gaps = 53/530 (10%)

Query: 72  SSTTLSPTKNDRTPLLSKPKSTW----VNPTKPRRSVLSLQ-------RQKRSTYS---- 116
           +S T++PT++ +  LL     ++     N + P  S    Q       R+K S +S    
Sbjct: 10  ASATINPTRSIKVRLLFPCSFSFHDSTSNHSAPPFSETHFQDVISKSIREKPSNFSNYYW 69

Query: 117 ----YNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTRENA-------LLILNSLK 165
               + P + D  LF R L+    +    LR       QP    +       L IL    
Sbjct: 70  LSHQFGPVIVDPDLFVRVLSSFRTSPRMALRLFRWAESQPGFRRSEFVFCAILEILAQNN 129

Query: 166 FWQKSYFFFNWIKSQNLFPMETIFYN------VTMKSLRF----GRQFQLIEQ---LANE 212
             + +Y+    + + N+  +  +         V++K L        +  ++EQ   + ++
Sbjct: 130 LMRSAYWVMERVINANMHRIVDVLIGGCVSSEVSVKILDLLIWVYSKKSMVEQCLSVFDK 189

Query: 213 MVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK 272
           M+ + +  D    + I+   +  +L  +A+E +  M + G+ P  VTY+ +LD Y K GK
Sbjct: 190 MIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGK 249

Query: 273 VEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNT 332
           V++ L L       G  P+ + ++VL     + G+++  + ++ EM   G++ +   YN 
Sbjct: 250 VQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNP 309

Query: 333 LLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAK--DALELWERMRE 390
           L+      G    A SL +EMV  G +P   T  +   IYG  +  +  DA++    M  
Sbjct: 310 LIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSF--IYGLCKLGRMSDAMQQLSDMLA 367

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
           N    D + YNTL+     +G + +A  LF++++ S Y  P   +Y  +L+     G ++
Sbjct: 368 NNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELR-SIYLFPTIVTYNTLLDGLCRQGELE 426

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD-----RL 505
            A +L  EM   G+A +++  T L+    K   +      F   +  G++ D      R+
Sbjct: 427 VAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRI 486

Query: 506 CGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKE 555
            G L     L +TS         L +  P  +   N++ D      N++E
Sbjct: 487 VGEL----KLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEE 532



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/171 (21%), Positives = 81/171 (47%), Gaps = 1/171 (0%)

Query: 179 SQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLF 238
           S  + P    + ++    L  GR  +   ++  EM+S  +    +TY+ +I         
Sbjct: 542 SDGVIPDYVTYTSIIHAHLENGR-LRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRL 600

Query: 239 DEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
           + A  +F  M + G++P+ +TY+++++   K  ++++  + +   V  G  P+  ++++L
Sbjct: 601 ERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTIL 660

Query: 299 GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSL 349
                  G++     + ++M   GVQP+   ++ LL+ +GK  K    R L
Sbjct: 661 INENCNMGNWQEALSLYKQMLDRGVQPDSCTHSALLKQLGKDCKLQAVRQL 711


>gi|357123530|ref|XP_003563463.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Brachypodium distachyon]
          Length = 862

 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 113/483 (23%), Positives = 192/483 (39%), Gaps = 42/483 (8%)

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
           E L   M+   +  D  +Y  I+    R        E F  M  TG  PD   Y  +++ 
Sbjct: 265 EMLLRAMLEAGVLPDTASYRHIVDAFARAGDLSRVAELFREMADTGHTPDPSAYLGLMEA 324

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
           + + G   E +++  +  A G  P    + VL  ++G  G +DG+R + +EM++  V P+
Sbjct: 325 HTRVGATAEAVAVLRQMQADGCAPTAATYRVLLDLYGRQGRFDGVRELFREMRT-AVPPD 383

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
              YN L    G  G       LF +M+ +G+ PD +T   ++   G+    +DA E+ +
Sbjct: 384 TATYNVLFSVFGDGGFFKEVVELFHDMLRTGIEPDMETCEGVLVACGQGGLHEDAREVLD 443

Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
            + +         Y  L+       + EEA   F +M       P   +Y ++ N++  G
Sbjct: 444 YITKEGMVPTAKAYTGLVEALGHAAMYEEAYVAF-NMMTEIGSLPTIETYNSLANVFAKG 502

Query: 447 GNVDNAIELFEEMS-ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRL 505
           G    A  +F  M+   G+  N      LI+   +  ++DD V+ +         PD+R 
Sbjct: 503 GLFQEAESIFSRMTNSAGIQKNKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDERS 562

Query: 506 CGCLLSVVSLCETSEDVGKVITCLQQ--ANPKLVAF---LNLIEDN---STGFENIKEEF 557
              +L+   +    ++  +    +Q   A P ++A+   L+L   N   +  ++ ++E  
Sbjct: 563 LEGVLNAYCIAGVIDESKEQFEEIQSNMAVPSIIAYCMMLSLYARNDRWADAYDLLEEMK 622

Query: 558 RNVIKDTE-------------------------------VDARRPFCNCLIDICRNRNLN 586
            N    T                                 D    F N L+D+       
Sbjct: 623 TNRASSTHQVIASMIQGEYDDSSNWQMVEYALDSSNLEGCDYSLRFFNALLDVLWWFGQK 682

Query: 587 ERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAKIVLREEVL 646
            RA  +L      GL+P L   T   WSLDV  +SVG A  A+  W+  L   +  E+ L
Sbjct: 683 ARAARVLDHAVNSGLFPELSRDTKLVWSLDVHRMSVGGALVAVSVWLNKLYARLKGEKDL 742

Query: 647 PQL 649
           PQL
Sbjct: 743 PQL 745



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/345 (22%), Positives = 150/345 (43%), Gaps = 15/345 (4%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDN---I 223
           WQ+S   F +++ Q+    +   + + +  L  GRQ   +     E V +++  D+   +
Sbjct: 113 WQRSVRLFKYMQRQSWCRPDEHIHAIVIGVL--GRQGPALLDKCLE-VFHDLPADSRTAL 169

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK----VEEVLSL 279
           +Y+++I    R  L +EA    ++M   G+ P   TY+ +L   A++       + +L L
Sbjct: 170 SYTSLIAAYARNALHEEARALLDQMKAAGVAPTAATYNTVLAACARATDPPVPFDMLLGL 229

Query: 280 Y---ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA 336
           +      V+   +PD   ++ L          D    +L+ M   GV P+   Y  +++A
Sbjct: 230 FAEMRHDVSPAVRPDLTTYNTLLAAAAVRSLNDQAEMLLRAMLEAGVLPDTASYRHIVDA 289

Query: 337 MGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMD 396
             +AG       LF EM ++G TPD      L++ + +     +A+ +  +M+ +     
Sbjct: 290 FARAGDLSRVAELFREMADTGHTPDPSAYLGLMEAHTRVGATAEAVAVLRQMQADGCAPT 349

Query: 397 FILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELF 456
              Y  LL++    G  +    LF +M+ +    PD  +Y  + +++G GG     +ELF
Sbjct: 350 AATYRVLLDLYGRQGRFDGVRELFREMRTA--VPPDTATYNVLFSVFGDGGFFKEVVELF 407

Query: 457 EEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
            +M   G+  ++  C  ++   G+    +D   V       G+ P
Sbjct: 408 HDMLRTGIEPDMETCEGVLVACGQGGLHEDAREVLDYITKEGMVP 452



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 121/264 (45%), Gaps = 5/264 (1%)

Query: 199 FGRQ--FQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPD 256
           +GRQ  F  + +L  EM    +  D  TY+ + +       F E +E F  M +TG+ PD
Sbjct: 360 YGRQGRFDGVRELFREM-RTAVPPDTATYNVLFSVFGDGGFFKEVVELFHDMLRTGIEPD 418

Query: 257 EVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQ 316
             T   +L    + G  E+   + +     G  P   A++ L +  G +  Y+       
Sbjct: 419 METCEGVLVACGQGGLHEDAREVLDYITKEGMVPTAKAYTGLVEALGHAAMYEEAYVAFN 478

Query: 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES-GLTPDEKTLTALIKIYGKA 375
            M  +G  P +  YN+L     K G    A S+F  M  S G+  ++ +  ALI+ Y + 
Sbjct: 479 MMTEIGSLPTIETYNSLANVFAKGGLFQEAESIFSRMTNSAGIQKNKDSFDALIEAYCQG 538

Query: 376 RWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYS 435
               DA++ +  MR++++  D      +LN     G+++E++  FE+++ S+   P   +
Sbjct: 539 AQLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCIAGVIDESKEQFEEIQ-SNMAVPSIIA 597

Query: 436 YTAMLNIYGSGGNVDNAIELFEEM 459
           Y  ML++Y       +A +L EEM
Sbjct: 598 YCMMLSLYARNDRWADAYDLLEEM 621



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 78/348 (22%), Positives = 137/348 (39%), Gaps = 52/348 (14%)

Query: 255 PDEVTYSAILDVYAKSGK--VEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIR 312
           PDE  ++ ++ V  + G   +++ L ++    A       ++++ L   +  +  ++  R
Sbjct: 131 PDEHIHAIVIGVLGRQGPALLDKCLEVFHDLPADSRTA--LSYTSLIAAYARNALHEEAR 188

Query: 313 YVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP--------GL------------------- 345
            +L +MK+ GV P    YNT+L A  +A  P        GL                   
Sbjct: 189 ALLDQMKAAGVAPTAATYNTVLAACARATDPPVPFDMLLGLFAEMRHDVSPAVRPDLTTY 248

Query: 346 --------ARSLFDE-------MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
                    RSL D+       M+E+G+ PD  +   ++  + +A       EL+  M +
Sbjct: 249 NTLLAAAAVRSLNDQAEMLLRAMLEAGVLPDTASYRHIVDAFARAGDLSRVAELFREMAD 308

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
                D   Y  L+     +G   EA  +   M+ +D C P   +Y  +L++YG  G  D
Sbjct: 309 TGHTPDPSAYLGLMEAHTRVGATAEAVAVLRQMQ-ADGCAPTAATYRVLLDLYGRQGRFD 367

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
              ELF EM    V  +      L    G      ++V +F   +  G++PD   C  +L
Sbjct: 368 GVRELFREM-RTAVPPDTATYNVLFSVFGDGGFFKEVVELFHDMLRTGIEPDMETCEGVL 426

Query: 511 SVVSLCETSEDVGKVITCLQQAN--PKLVAFLNLIEDNSTGFENIKEE 556
                    ED  +V+  + +    P   A+  L+E  + G   + EE
Sbjct: 427 VACGQGGLHEDAREVLDYITKEGMVPTAKAYTGLVE--ALGHAAMYEE 472



 Score = 75.9 bits (185), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 107/242 (44%), Gaps = 1/242 (0%)

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           P +T  YNV       G  F+ + +L ++M+   IE D  T   ++    +  L ++A E
Sbjct: 381 PPDTATYNVLFSVFGDGGFFKEVVELFHDMLRTGIEPDMETCEGVLVACGQGGLHEDARE 440

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
             + + K G++P    Y+ +++    +   EE    +      G  P    ++ L  +F 
Sbjct: 441 VLDYITKEGMVPTAKAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTIETYNSLANVFA 500

Query: 304 ESGDYDGIRYVLQEM-KSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
           + G +     +   M  S G+Q N   ++ L+EA  +  +   A   + EM +S   PDE
Sbjct: 501 KGGLFQEAESIFSRMTNSAGIQKNKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDE 560

Query: 363 KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED 422
           ++L  ++  Y  A    ++ E +E ++ N      I Y  +L++ A      +A  L E+
Sbjct: 561 RSLEGVLNAYCIAGVIDESKEQFEEIQSNMAVPSIIAYCMMLSLYARNDRWADAYDLLEE 620

Query: 423 MK 424
           MK
Sbjct: 621 MK 622



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 52/247 (21%), Positives = 96/247 (38%), Gaps = 40/247 (16%)

Query: 161 LNSLKFWQKSYFFFNWIKSQNLFP-METIFYNVTMKSLRFGRQFQLIEQLANEMV-SNEI 218
           L     ++++Y  FN +      P +ET  YN        G  FQ  E + + M  S  I
Sbjct: 464 LGHAAMYEEAYVAFNMMTEIGSLPTIET--YNSLANVFAKGGLFQEAESIFSRMTNSAGI 521

Query: 219 ELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS 278
           + +  ++  +I    +    D+A++ +  M K+   PDE +   +L+ Y  +G ++E   
Sbjct: 522 QKNKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCIAGVIDESKE 581

Query: 279 LYERGVASGWKPDPIAFSVLGKMFGES------------------------------GDY 308
            +E   ++   P  IA+ ++  ++  +                              G+Y
Sbjct: 582 QFEEIQSNMAVPSIIAYCMMLSLYARNDRWADAYDLLEEMKTNRASSTHQVIASMIQGEY 641

Query: 309 DG------IRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
           D       + Y L      G   +L  +N LL+ +   G+   A  + D  V SGL P+ 
Sbjct: 642 DDSSNWQMVEYALDSSNLEGCDYSLRFFNALLDVLWWFGQKARAARVLDHAVNSGLFPEL 701

Query: 363 KTLTALI 369
              T L+
Sbjct: 702 SRDTKLV 708


>gi|255661178|gb|ACU25758.1| pentatricopeptide repeat-containing protein [Mulguraea scoparia]
          Length = 352

 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 88/290 (30%), Positives = 148/290 (51%), Gaps = 1/290 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D  TYST+IT   +  LFD A+ W ++M +  +  D V YS ++++  K     + +S++
Sbjct: 8   DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSXKLCDYSKAISIF 67

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
            R   SG+ PD +A++ +  +FG++  +   R ++ EM++ GV PN   Y+TLL    + 
Sbjct: 68  SRLKRSGFMPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTMYVEN 127

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
            K   A S+F EM E     D  T   +I +YG+   AK+A +L+  MR+     + + Y
Sbjct: 128 KKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSY 187

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           NTLL +  D  L  EA  LF  M+  +  + +  +Y +M+ IYG     + A  L +EM 
Sbjct: 188 NTLLRVYGDAELFGEAIHLFRLMQRKN-IEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 246

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
             G+  N +  + +I   GK  ++D    +F      GV+ D  L   ++
Sbjct: 247 NRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMI 296



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 138/271 (50%), Gaps = 1/271 (0%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
            +M  + +  D + YS +I  + +   + +AI  F R+ ++G MPD V Y+A+++V+ K+
Sbjct: 33  QKMEQDRVPGDLVLYSNLIELSXKLCDYSKAISIFSRLKRSGFMPDLVAYNAMINVFGKA 92

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
               E  SL      +G  P+  ++S L  M+ E+  +     V  EM+ +    +L   
Sbjct: 93  KLFREARSLISEMRTAGVMPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTC 152

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
           N +++  G+ G    A  LF  M + G+ P+  +   L+++YG A    +A+ L+  M+ 
Sbjct: 153 NIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR 212

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
                + + YN+++ +       E+A  L ++M+ +   +P++ +Y+ +++I+G  G +D
Sbjct: 213 KNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ-NRGIEPNSITYSTIISIWGKVGKLD 271

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
            A  LF+++   GV I+ +    +I    +A
Sbjct: 272 RAAMLFQKLRSSGVEIDQVLYQTMIVAYERA 302



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 145/297 (48%), Gaps = 6/297 (2%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K     P + + YN  +      + F+    L +EM +  +  +  +YS
Sbjct: 60  YSKAISIFSRLKRSGFMP-DLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYS 118

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY + G  +E   L+      
Sbjct: 119 TLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 178

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   ++ N+V YN+++   GK  +   A
Sbjct: 179 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKA 238

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R +   +D +LY T++  
Sbjct: 239 NNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVA 298

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
               GLV  A+RL  ++K     +PDN      ++I    G ++ A  +F +  + G
Sbjct: 299 YERAGLVAHAKRLLHELK-----RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAG 350



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 124/261 (47%), Gaps = 1/261 (0%)

Query: 252 GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGI 311
            L PD  TYS ++  + K G  +  LS  ++        D + +S L ++  +  DY   
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSXKLCDYSKA 63

Query: 312 RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371
             +   +K  G  P+LV YN ++   GKA     ARSL  EM  +G+ P+  + + L+ +
Sbjct: 64  ISIFSRLKRSGFMPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTM 123

Query: 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
           Y + +   +AL ++  MRE K  +D    N ++++   +G+ +EA++LF  M+     +P
Sbjct: 124 YVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG-IEP 182

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           +  SY  +L +YG       AI LF  M    +  NV+    ++   GK    +    + 
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 242

Query: 492 GVSIDRGVKPDDRLCGCLLSV 512
               +RG++P+      ++S+
Sbjct: 243 QEMQNRGIEPNSITYSTIISI 263



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 87/191 (45%), Gaps = 3/191 (1%)

Query: 355 ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
           E  L+PD  T + LI  +GK      AL   ++M +++ P D +LY+ L+ +   +    
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSXKLCDYS 61

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
           +A  +F  +K S +  PD  +Y AM+N++G       A  L  EM   GV  N    + L
Sbjct: 62  KAISIFSRLKRSGFM-PDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTL 120

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN- 533
           +    + ++  + + VF    +     D   C  ++ V      +++  K+   +++   
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180

Query: 534 -PKLVAFLNLI 543
            P +V++  L+
Sbjct: 181 EPNVVSYNTLL 191


>gi|422293946|gb|EKU21246.1| hypothetical protein NGA_2092600 [Nannochloropsis gaditana CCMP526]
          Length = 659

 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 90/348 (25%), Positives = 162/348 (46%), Gaps = 5/348 (1%)

Query: 157 ALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSN 216
           A+      + W+++      ++++ L P + + +N  M +L    Q+ L  +L  E+  +
Sbjct: 232 AIKACGQARRWREALGVLREMQARGLRP-DLVSFNTAMDALGKAGQYDLALELFTEIEDH 290

Query: 217 EIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV 276
               + ++Y+T I    R  + D A E    M    + PD V+Y+ ++  +AK  + +  
Sbjct: 291 GFAPNLVSYNTAIHACGRAGMVDRAHELLREMQGLSVRPDSVSYNTVMAAFAKKNQWKAA 350

Query: 277 LSLY-ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLE 335
           L L  E   A G  PD I+++    +  ++G ++    +L E    G+QP++V YNT++ 
Sbjct: 351 LELLAEMKEAPGVDPDLISYNTAMHVCAKAGRWERATELLTEALGQGLQPDVVSYNTVMH 410

Query: 336 AMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPM 395
           A G+AG+   A  LF  M E G+ PD  +    +    +A   + AL++   M       
Sbjct: 411 ACGRAGEYLQALDLFGMMEEVGVAPDRVSFNTAMHACNRALKWQAALQILREMEARSIAP 470

Query: 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDN-YSYTAMLNIYGSGGNVDNAIE 454
           +   Y   ++ C   G  E A  L E+M++     P N ++YTA ++    GG VD  + 
Sbjct: 471 NVKSYTIAVDACGRAGEWERALELMEEMEVRGV--PANVHTYTAAMDACCRGGAVDRVLV 528

Query: 455 LFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           L EEM   GV  NV+  T  +  + +  + D    V    + RG++ D
Sbjct: 529 LLEEMDGKGVEPNVVSYTIAMDAMNRVGKWDRASAVLEQMVQRGLRLD 576



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 148/322 (45%), Gaps = 2/322 (0%)

Query: 182 LFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEA 241
           L  ++ + + + +K+    R+++    +  EM +  +  D ++++T +    +   +D A
Sbjct: 221 LIEVDVVGFTMAIKACGQARRWREALGVLREMQARGLRPDLVSFNTAMDALGKAGQYDLA 280

Query: 242 IEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKM 301
           +E F  +   G  P+ V+Y+  +    ++G V+    L         +PD ++++ +   
Sbjct: 281 LELFTEIEDHGFAPNLVSYNTAIHACGRAGMVDRAHELLREMQGLSVRPDSVSYNTVMAA 340

Query: 302 FGESGDYDGIRYVLQEMKSL-GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTP 360
           F +   +     +L EMK   GV P+L+ YNT +    KAG+   A  L  E +  GL P
Sbjct: 341 FAKKNQWKAALELLAEMKEAPGVDPDLISYNTAMHVCAKAGRWERATELLTEALGQGLQP 400

Query: 361 DEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLF 420
           D  +   ++   G+A     AL+L+  M E     D + +NT ++ C      + A ++ 
Sbjct: 401 DVVSYNTVMHACGRAGEYLQALDLFGMMEEVGVAPDRVSFNTAMHACNRALKWQAALQIL 460

Query: 421 EDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK 480
            +M+      P+  SYT  ++  G  G  + A+EL EEM   GV  NV   T  +    +
Sbjct: 461 REMEARSIA-PNVKSYTIAVDACGRAGEWERALELMEEMEVRGVPANVHTYTAAMDACCR 519

Query: 481 ARRIDDLVRVFGVSIDRGVKPD 502
              +D ++ +      +GV+P+
Sbjct: 520 GGAVDRVLVLLEEMDGKGVEPN 541



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 139/310 (44%), Gaps = 3/310 (0%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F  I+     P   + YN  + +           +L  EM    +  D+++Y+T++   
Sbjct: 283 LFTEIEDHGFAP-NLVSYNTAIHACGRAGMVDRAHELLREMQGLSVRPDSVSYNTVMAAF 341

Query: 233 KRCNLFDEAIEWFERMYKT-GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291
            + N +  A+E    M +  G+ PD ++Y+  + V AK+G+ E    L    +  G +PD
Sbjct: 342 AKKNQWKAALELLAEMKEAPGVDPDLISYNTAMHVCAKAGRWERATELLTEALGQGLQPD 401

Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
            ++++ +    G +G+Y     +   M+ +GV P+ V +NT + A  +A K   A  +  
Sbjct: 402 VVSYNTVMHACGRAGEYLQALDLFGMMEEVGVAPDRVSFNTAMHACNRALKWQAALQILR 461

Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411
           EM    + P+ K+ T  +   G+A   + ALEL E M     P +   Y   ++ C   G
Sbjct: 462 EMEARSIAPNVKSYTIAVDACGRAGEWERALELMEEMEVRGVPANVHTYTAAMDACCRGG 521

Query: 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC 471
            V+    L E+M      +P+  SYT  ++     G  D A  + E+M + G+ ++ +  
Sbjct: 522 AVDRVLVLLEEMD-GKGVEPNVVSYTIAMDAMNRVGKWDRASAVLEQMVQRGLRLDSVSY 580

Query: 472 TCLIQCLGKA 481
              +   G+A
Sbjct: 581 RTALSTAGRA 590



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/254 (20%), Positives = 114/254 (44%), Gaps = 3/254 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           W+ +      +K       + I YN  M       +++   +L  E +   ++ D ++Y+
Sbjct: 347 WKAALELLAEMKEAPGVDPDLISYNTAMHVCAKAGRWERATELLTEALGQGLQPDVVSYN 406

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++    R   + +A++ F  M + G+ PD V+++  +    ++ K +  L +     A 
Sbjct: 407 TVMHACGRAGEYLQALDLFGMMEEVGVAPDRVSFNTAMHACNRALKWQAALQILREMEAR 466

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
              P+  ++++     G +G+++    +++EM+  GV  N+  Y   ++A  + G     
Sbjct: 467 SIAPNVKSYTIAVDACGRAGEWERALELMEEMEVRGVPANVHTYTAAMDACCRGGAVDRV 526

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGK-ARWAKDALELWERMRENKWPMDFILYNTLLN 405
             L +EM   G+ P+  + T  +    +  +W + A  + E+M +    +D + Y T L+
Sbjct: 527 LVLLEEMDGKGVEPNVVSYTIAMDAMNRVGKWDR-ASAVLEQMVQRGLRLDSVSYRTALS 585

Query: 406 MCADIGLVEEAERL 419
                G  EE ERL
Sbjct: 586 TAGRAG-DEEGERL 598


>gi|357151724|ref|XP_003575883.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Brachypodium distachyon]
          Length = 757

 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 153/318 (48%), Gaps = 2/318 (0%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           +  + SQ + P + + +N  + +L   RQ +    +  EM S ++  D  T++T++    
Sbjct: 184 YTEMSSQGIEP-DVVTFNTVIDALCRARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFV 242

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
                + A+    RM + G  P  VT + +++ Y K G+V + L   ++ +A G++PD +
Sbjct: 243 EEGSIEAALRLKARMSEMGCSPTSVTVNVLINGYCKLGRVGDALGYIQQEIADGFEPDRV 302

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
            FS       ++G  D    VL  M   G +P++  Y+T++  +   G+   A+ + ++M
Sbjct: 303 TFSTFVNGLCQNGHVDHALKVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQM 362

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
           V+SG  PD  T   LI         ++AL+L   +       +   +N L+N    +G  
Sbjct: 363 VDSGCLPDTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDP 422

Query: 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTC 473
             A RLFE+MK S  C PD  +Y  +++   S G +  A++L +EM   G   + +    
Sbjct: 423 HLAVRLFEEMK-SSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNT 481

Query: 474 LIQCLGKARRIDDLVRVF 491
           +I  L K RRI++   VF
Sbjct: 482 IIDGLCKRRRIEEAEEVF 499



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 139/289 (48%), Gaps = 1/289 (0%)

Query: 213 MVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK 272
           M+    E D  TYST+I C       +EA     +M  +G +PD  T++ ++       +
Sbjct: 327 MLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQ 386

Query: 273 VEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNT 332
           +EE L L       G  P+   F++L     + GD      + +EMKS G  P+ V YN 
Sbjct: 387 LEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNI 446

Query: 333 LLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENK 392
           L++ +  +GK   A  L  EM  SG      T   +I    K R  ++A E++++M    
Sbjct: 447 LIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVTG 506

Query: 393 WPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNA 452
              + I +NTL++   +   +++A  L + M +S+  +P+N +Y ++L  Y   GN+  A
Sbjct: 507 IGRNAITFNTLIDGLCNAERIDDAAELVDQM-ISEGLQPNNVTYNSILTHYCKQGNISKA 565

Query: 453 IELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
            ++ + M+  G  ++V+    LI  L KARR    +++      +G+KP
Sbjct: 566 ADILQTMTANGFEVDVVTYATLINGLCKARRTQAALKLLRGMRMKGMKP 614



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 60/252 (23%), Positives = 117/252 (46%), Gaps = 2/252 (0%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F  +KS    P E + YN+ + +L    +      L  EM  +      +TY+TII   
Sbjct: 428 LFEEMKSSGCTPDE-VTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGL 486

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +    +EA E F++M  TG+  + +T++ ++D    + ++++   L ++ ++ G +P+ 
Sbjct: 487 CKRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDAAELVDQMISEGLQPNN 546

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           + ++ +   + + G+      +LQ M + G + ++V Y TL+  + KA +   A  L   
Sbjct: 547 VTYNSILTHYCKQGNISKAADILQTMTANGFEVDVVTYATLINGLCKARRTQAALKLLRG 606

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL-NMCADIG 411
           M   G+ P  K    +I+   +    +DAL L+  M E   P D   Y  +   +C   G
Sbjct: 607 MRMKGMKPTPKAYNPVIQSLFRGNNGRDALSLFREMTEVGGPPDAFTYKIVFRGLCRGGG 666

Query: 412 LVEEAERLFEDM 423
            ++EA     +M
Sbjct: 667 PIKEAFDFLVEM 678



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 88/195 (45%), Gaps = 3/195 (1%)

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
           D    V  ++   GVQ N  VYN LL  + +  K  L  S + EM   G+ PD  T   +
Sbjct: 143 DAFDLVSNQLDMFGVQANTEVYNHLLTVLAEGSKIKLLESAYTEMSSQGIEPDVVTFNTV 202

Query: 369 IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428
           I    +AR A+ A+ + E M       D   + TL+    + G +E A RL    ++S+ 
Sbjct: 203 IDALCRARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFVEEGSIEAALRL--KARMSEM 260

Query: 429 -CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
            C P + +   ++N Y   G V +A+   ++    G   + +  +  +  L +   +D  
Sbjct: 261 GCSPTSVTVNVLINGYCKLGRVGDALGYIQQEIADGFEPDRVTFSTFVNGLCQNGHVDHA 320

Query: 488 VRVFGVSIDRGVKPD 502
           ++V G+ +  G +PD
Sbjct: 321 LKVLGLMLQEGCEPD 335


>gi|357502615|ref|XP_003621596.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496611|gb|AES77814.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 849

 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 125/571 (21%), Positives = 246/571 (43%), Gaps = 51/571 (8%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           FF+ + ++ + P + + YN  +        ++  ++L +EM    I  D  TY+T +   
Sbjct: 271 FFDEMLAEGIVP-DRLTYNSLLSVCASKGMWETAQKLLSEMDQKGIVRDAFTYNTYLDTL 329

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +    D A    E M    + P  VTYS ++D  AK+  +E+ L+LYE         D 
Sbjct: 330 CKGGQIDLARRVLEEMSSRRVWPTVVTYSTMIDGCAKANLLEDALNLYEEMKLRSISVDR 389

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           ++++ +  ++ + G +D      +EM+S G++ ++V YN LL   G+ G     R LF+E
Sbjct: 390 VSYNTMVGIYAKLGRFDEAIGQCKEMESCGMKRDVVTYNALLSGYGRYGMYDEVRRLFEE 449

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M    + P+  T + +I +Y K    ++A+++++  ++ +  +D + Y ++++     GL
Sbjct: 450 MKAWNIYPNTLTYSTMIDVYTKGGMFQEAMDVYKDFKKAQLEVDVVFYTSIIDSLCKNGL 509

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLN-----------IYGSGGNVDNAIELFEEMSE 461
           VE +  L   M +    KP+  ++ ++++           ++GS   V+   E    M  
Sbjct: 510 VESSIMLLIAM-IEKGIKPNVVTFNSIIDASRQSPTLEYGVHGSSQAVEYPTEQLSSMLI 568

Query: 462 LGVAINVMGCTCLIQCLGK------ARRIDD---------LVRVFGVSIDRGVKPDDRLC 506
            G   N  G   +++   +        R  D         ++ +F    +  +KP+    
Sbjct: 569 DGAFQNKTGDDRILKMFEQLAAEKAGHREKDRKGRQDQHCILWLFQKMHELNIKPNVVTF 628

Query: 507 GCLLSVVSLCETSEDVGKVITCLQQANPKLVA-----FLNLIEDNSTGFENIKEEFRNVI 561
             +L+  S C + ED   ++  L+  + ++        +   E      + + +E R + 
Sbjct: 629 SAILNACSRCNSFEDASMLLGALRLFDNQVYGVTHGLLMGYREQVWFQAQTLFDEMRRMD 688

Query: 562 KDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWS---LDVR 618
             T       F N L D+         A  ++  G    ++ G       EWS   LD+ 
Sbjct: 689 SSTA----SAFYNALTDMLWQFGQRRGAEMVVTEGRRRNVWKG-------EWSISCLDLH 737

Query: 619 SLSVGAAQTALEEWMWTLAKIVLREEVLPQLFLAETGTGTHKFSQG---LATAFASHVNK 675
            +S GAA   +  W+  +   +     LP++    TG G H    G   L  A  + +N 
Sbjct: 738 LMSCGAACAMVHSWLLNMHSTLFEGSELPKIVTILTGWGKHSKVMGDGTLKRAVEALLNG 797

Query: 676 LAAPFRQSEGKAGCFVATREDLVSWVQARPS 706
           + +PFR +EG  G + +    L +W++ +PS
Sbjct: 798 MGSPFRIAEGNLGRYYSPGNLLATWLR-QPS 827



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 142/281 (50%), Gaps = 2/281 (0%)

Query: 223 ITYSTIITCAKRCNL-FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYE 281
           I+Y+++I    +  + FD  +++F+ M   G++PD +TY+++L V A  G  E    L  
Sbjct: 249 ISYNSLIDAGAKGEVDFDVVVKFFDEMLAEGIVPDRLTYNSLLSVCASKGMWETAQKLLS 308

Query: 282 RGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG 341
                G   D   ++       + G  D  R VL+EM S  V P +V Y+T+++   KA 
Sbjct: 309 EMDQKGIVRDAFTYNTYLDTLCKGGQIDLARRVLEEMSSRRVWPTVVTYSTMIDGCAKAN 368

Query: 342 KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYN 401
               A +L++EM    ++ D  +   ++ IY K     +A+   + M       D + YN
Sbjct: 369 LLEDALNLYEEMKLRSISVDRVSYNTMVGIYAKLGRFDEAIGQCKEMESCGMKRDVVTYN 428

Query: 402 TLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461
            LL+     G+ +E  RLFE+MK  +   P+  +Y+ M+++Y  GG    A++++++  +
Sbjct: 429 ALLSGYGRYGMYDEVRRLFEEMKAWN-IYPNTLTYSTMIDVYTKGGMFQEAMDVYKDFKK 487

Query: 462 LGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
             + ++V+  T +I  L K   ++  + +    I++G+KP+
Sbjct: 488 AQLEVDVVFYTSIIDSLCKNGLVESSIMLLIAMIEKGIKPN 528



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 118/268 (44%), Gaps = 39/268 (14%)

Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
           S ++    + G++   L L+E     G      +FS +   +G +G +     + + M+S
Sbjct: 182 STMIGTLGRLGEINHALRLFESARLEGHGNTVYSFSAMISAYGRNGHFSDAVDLFRSMRS 241

Query: 321 LGVQPNLVVYNTLLEAMGKAGKP-GLARSLFDEMVESGLTPDEKTLTALIKI-YGKARW- 377
            GV PNL+ YN+L++A  K      +    FDEM+  G+ PD  T  +L+ +   K  W 
Sbjct: 242 WGVYPNLISYNSLIDAGAKGEVDFDVVVKFFDEMLAEGIVPDRLTYNSLLSVCASKGMWE 301

Query: 378 --------------AKDA---------------LELWERMRENK-----WPMDFILYNTL 403
                          +DA               ++L  R+ E       WP   + Y+T+
Sbjct: 302 TAQKLLSEMDQKGIVRDAFTYNTYLDTLCKGGQIDLARRVLEEMSSRRVWPT-VVTYSTM 360

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           ++ CA   L+E+A  L+E+MKL      D  SY  M+ IY   G  D AI   +EM   G
Sbjct: 361 IDGCAKANLLEDALNLYEEMKLRS-ISVDRVSYNTMVGIYAKLGRFDEAIGQCKEMESCG 419

Query: 464 VAINVMGCTCLIQCLGKARRIDDLVRVF 491
           +  +V+    L+   G+    D++ R+F
Sbjct: 420 MKRDVVTYNALLSGYGRYGMYDEVRRLF 447


>gi|15221671|ref|NP_176495.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169919|sp|Q9CAN6.1|PPR97_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63070, mitochondrial; Flags: Precursor
 gi|12323265|gb|AAG51617.1|AC010795_21 unknown protein; 38394-36551 [Arabidopsis thaliana]
 gi|332195929|gb|AEE34050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 590

 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 94/329 (28%), Positives = 160/329 (48%), Gaps = 15/329 (4%)

Query: 179 SQNLFPMETIFYNVTMKSLRFGRQFQLIEQLA--NEMVSNEIELDNITYSTIITCAKRCN 236
           S NL+   +IF N       F R+ QL   LA   +M+        +T ++++      N
Sbjct: 107 SHNLYTY-SIFINY------FCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGN 159

Query: 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS 296
              EA+   ++M + G  PD VT++ ++    +  K  E ++L ER V  G +PD + + 
Sbjct: 160 RISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYG 219

Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356
            +     + G+ D    +L +M+   ++ ++V+YNT+++ + K      A  LF++M   
Sbjct: 220 AVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETK 279

Query: 357 GLTPDEKTLTALIKI---YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
           G+ PD  T   LI     YG  RW+ DA  L   M E     D + +N L++     G +
Sbjct: 280 GIKPDVFTYNPLISCLCNYG--RWS-DASRLLSDMLEKNINPDLVFFNALIDAFVKEGKL 336

Query: 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTC 473
            EAE+L+++M  S +C PD  +Y  ++  +     V+  +E+F EMS+ G+  N +  T 
Sbjct: 337 VEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTT 396

Query: 474 LIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           LI    +AR  D+   VF   +  GV PD
Sbjct: 397 LIHGFFQARDCDNAQMVFKQMVSDGVHPD 425



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 144/295 (48%), Gaps = 2/295 (0%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L   MV    + D +TY  +I    +    D A+    +M K  +  D V Y+ I+D   
Sbjct: 202 LVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLC 261

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           K   +++   L+ +    G KPD   ++ L       G +     +L +M    + P+LV
Sbjct: 262 KYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLV 321

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVES-GLTPDEKTLTALIKIYGKARWAKDALELWER 387
            +N L++A  K GK   A  L+DEMV+S    PD      LIK + K +  ++ +E++  
Sbjct: 322 FFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFRE 381

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           M +     + + Y TL++        + A+ +F+ M +SD   PD  +Y  +L+   + G
Sbjct: 382 MSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQM-VSDGVHPDIMTYNILLDGLCNNG 440

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           NV+ A+ +FE M +  + ++++  T +I+ L KA +++D   +F     +GVKP+
Sbjct: 441 NVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPN 495



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/269 (29%), Positives = 128/269 (47%), Gaps = 2/269 (0%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
            L N+M   +IE D + Y+TII    +    D+A + F +M   G+ PD  TY+ ++   
Sbjct: 236 NLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCL 295

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEM-KSLGVQPN 326
              G+  +   L    +     PD + F+ L   F + G       +  EM KS    P+
Sbjct: 296 CNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPD 355

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
           +V YNTL++   K  +      +F EM + GL  +  T T LI  + +AR   +A  +++
Sbjct: 356 VVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFK 415

Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
           +M  +    D + YN LL+   + G VE A  +FE M+  D  K D  +YT M+      
Sbjct: 416 QMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDM-KLDIVTYTTMIEALCKA 474

Query: 447 GNVDNAIELFEEMSELGVAINVMGCTCLI 475
           G V++  +LF  +S  GV  NV+  T ++
Sbjct: 475 GKVEDGWDLFCSLSLKGVKPNVVTYTTMM 503



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 115/265 (43%), Gaps = 1/265 (0%)

Query: 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
            D+AI  F  M K+   P  V +S +L   AK  K + V+SL E+    G   +   +S+
Sbjct: 56  LDDAIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSI 115

Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
               F           +L +M  LG  P++V  N+LL       +   A +L D+MVE G
Sbjct: 116 FINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMG 175

Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417
             PD  T T L+    +   A +A+ L ERM       D + Y  ++N     G  + A 
Sbjct: 176 YQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLAL 235

Query: 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
            L   M+     + D   Y  +++      ++D+A +LF +M   G+  +V     LI C
Sbjct: 236 NLLNKME-KGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISC 294

Query: 478 LGKARRIDDLVRVFGVSIDRGVKPD 502
           L    R  D  R+    +++ + PD
Sbjct: 295 LCNYGRWSDASRLLSDMLEKNINPD 319



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 74/303 (24%), Positives = 145/303 (47%), Gaps = 5/303 (1%)

Query: 165 KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNI 223
           K    ++  FN ++++ + P +   YN  +  L  +GR +    +L ++M+   I  D +
Sbjct: 264 KHMDDAFDLFNKMETKGIKP-DVFTYNPLISCLCNYGR-WSDASRLLSDMLEKNINPDLV 321

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKT-GLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
            ++ +I    +     EA + ++ M K+    PD V Y+ ++  + K  +VEE + ++  
Sbjct: 322 FFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFRE 381

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
               G   + + ++ L   F ++ D D  + V ++M S GV P+++ YN LL+ +   G 
Sbjct: 382 MSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGN 441

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
              A  +F+ M +  +  D  T T +I+   KA   +D  +L+  +       + + Y T
Sbjct: 442 VETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTT 501

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
           +++     GL EEA+ LF +MK  D   P++ +Y  ++      G+   + EL +EM   
Sbjct: 502 MMSGFCRKGLKEEADALFVEMK-EDGPLPNSGTYNTLIRARLRDGDEAASAELIKEMRSC 560

Query: 463 GVA 465
           G A
Sbjct: 561 GFA 563



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 111/239 (46%), Gaps = 1/239 (0%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           + +S +++   + N FD  I   E+M   G+  +  TYS  ++ + +  ++   L++  +
Sbjct: 76  VEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIFINYFCRRSQLSLALAILGK 135

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
            +  G+ P  +  + L   F           ++ +M  +G QP+ V + TL+  + +  K
Sbjct: 136 MMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNK 195

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
              A +L + MV  G  PD  T  A+I    K      AL L  +M + K   D ++YNT
Sbjct: 196 ASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNT 255

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461
           +++       +++A  LF  M+ +   KPD ++Y  +++   + G   +A  L  +M E
Sbjct: 256 IIDGLCKYKHMDDAFDLFNKME-TKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLE 313



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 87/206 (42%)

Query: 179 SQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLF 238
           SQ      T+ Y   +      R     + +  +MVS+ +  D +TY+ ++         
Sbjct: 383 SQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNV 442

Query: 239 DEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
           + A+  FE M K  +  D VTY+ +++   K+GKVE+   L+      G KP+ + ++ +
Sbjct: 443 ETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTM 502

Query: 299 GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
              F   G  +    +  EMK  G  PN   YNTL+ A  + G    +  L  EM   G 
Sbjct: 503 MSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARLRDGDEAASAELIKEMRSCGF 562

Query: 359 TPDEKTLTALIKIYGKARWAKDALEL 384
             D  T   +  +    R  K  L++
Sbjct: 563 AGDASTFGLVTNMLHDGRLDKSFLDM 588


>gi|449442096|ref|XP_004138818.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79490,
           mitochondrial-like [Cucumis sativus]
 gi|449490234|ref|XP_004158545.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79490,
           mitochondrial-like [Cucumis sativus]
          Length = 823

 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 122/537 (22%), Positives = 238/537 (44%), Gaps = 36/537 (6%)

Query: 177 IKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCN 236
           + +Q    + T+F N   K L + + F++ E +A      E  LD  T+  +I C  +  
Sbjct: 263 VDTQTYNSLITLFLN---KGLPY-KAFEIYESMAGA----ECSLDASTFELMIPCLAKSG 314

Query: 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS 296
             D A++ F+ M +    P +  YS+++D   K+G+++  + +Y        +P  + F 
Sbjct: 315 RLDAAMKLFQEMKEKKYRPAQNVYSSLVDSMGKAGRLDTSMKIYMEMQLLELRPSALMFV 374

Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356
            L +   ++G  D    +  +MK  G +PN  +Y+ ++E+  K+GK  +A S+F EM ++
Sbjct: 375 SLIESHVKAGKLDTALKLWDDMKRAGFKPNFGLYSMVVESHAKSGKLDVAMSVFTEMEKA 434

Query: 357 GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEA 416
           G  P   T   L+++   +     A++L+  M      +    Y +LL + A+  L++ A
Sbjct: 435 GFLPIPSTYCCLLEMQAASGHVDAAMKLYNSMTNAGLRLGLNTYTSLLTLLANKKLIDIA 494

Query: 417 ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
            ++  +MK   +    + S + +L +Y   G+VD+A+   + M   G+  N      L +
Sbjct: 495 AKVLLEMKAMGFSV--SVSASDVLMVYIKEGSVDSALRWLQFMGSSGIRTNSFIIRQLFE 552

Query: 477 CLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKL 536
              K    +  + +    ++   K D  L   +L+ +  C+  +    +++ L     K 
Sbjct: 553 SCMKKGMYESAMPLLETYVNSAAKVDLILYTSILAHLVRCQEEQKERYLMSILSTTKHKA 612

Query: 537 VAFLNLIEDNSTGFEN--------IKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNER 588
            +FL  +    TG E         ++E F+++  + E  + + F N L++         R
Sbjct: 613 HSFLCGL---FTGTEQRKQPVLSFVREFFQSIDYELEESSAKYFVNVLLNYLILMGQINR 669

Query: 589 AHELLYLGTLYGLYPGLHNKTLDE---WSLDVRSLSVGAAQTALEEWMWTLAKIVLREEV 645
           A  +  +     L+P       D+   WSLDVR+LSVGAA  A+   +    K +L   +
Sbjct: 670 ARCIWKVAYENKLFP--KAIVFDQHIAWSLDVRNLSVGAALIAVVHTLHRFRKRMLYYGI 727

Query: 646 LPQLFLAETGTGTHKFSQGLATAFASHVNKLAAPFRQSEGKAGCFVATREDLVSWVQ 702
           +P+     TG         L    A  ++ + +PF  S+       AT + ++ W +
Sbjct: 728 VPRRIKLVTGP-------TLKLVIAQMLSSVESPFEVSK---VVLRATGDSVMEWFK 774



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 78/327 (23%), Positives = 155/327 (47%), Gaps = 4/327 (1%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           + S   F W K Q+ +      Y +    L   R F  I+ L +E+V +    + +++S 
Sbjct: 173 EASLSLFRWAKRQSWYSPNDECYGLLFDGLNQRRDFDAIQLLFDEVVRDLSSDETVSFSA 232

Query: 228 ---IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
              +I    +    + +   F++++ +G   D  TY++++ ++   G   +   +YE   
Sbjct: 233 YNRVIQYLAKAEKLEVSFCCFKKIHDSGFKVDTQTYNSLITLFLNKGLPYKAFEIYESMA 292

Query: 285 ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344
            +    D   F ++     +SG  D    + QEMK    +P   VY++L+++MGKAG+  
Sbjct: 293 GAECSLDASTFELMIPCLAKSGRLDAAMKLFQEMKEKKYRPAQNVYSSLVDSMGKAGRLD 352

Query: 345 LARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
            +  ++ EM    L P      +LI+ + KA     AL+LW+ M+   +  +F LY+ ++
Sbjct: 353 TSMKIYMEMQLLELRPSALMFVSLIESHVKAGKLDTALKLWDDMKRAGFKPNFGLYSMVV 412

Query: 405 NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
              A  G ++ A  +F +M+ + +  P   +Y  +L +  + G+VD A++L+  M+  G+
Sbjct: 413 ESHAKSGKLDVAMSVFTEMEKAGFL-PIPSTYCCLLEMQAASGHVDAAMKLYNSMTNAGL 471

Query: 465 AINVMGCTCLIQCLGKARRIDDLVRVF 491
            + +   T L+  L   + ID   +V 
Sbjct: 472 RLGLNTYTSLLTLLANKKLIDIAAKVL 498



 Score = 42.0 bits (97), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 31/154 (20%), Positives = 72/154 (46%), Gaps = 3/154 (1%)

Query: 395 MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIE 454
           + F  YN ++   A    +E +   F+ +  S + K D  +Y +++ ++ + G    A E
Sbjct: 228 VSFSAYNRVIQYLAKAEKLEVSFCCFKKIHDSGF-KVDTQTYNSLITLFLNKGLPYKAFE 286

Query: 455 LFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVS 514
           ++E M+    +++      +I CL K+ R+D  +++F    ++  +P   +   L+  + 
Sbjct: 287 IYESMAGAECSLDASTFELMIPCLAKSGRLDAAMKLFQEMKEKKYRPAQNVYSSLVDSMG 346

Query: 515 LCETSEDVGKVITCLQ--QANPKLVAFLNLIEDN 546
                +   K+   +Q  +  P  + F++LIE +
Sbjct: 347 KAGRLDTSMKIYMEMQLLELRPSALMFVSLIESH 380


>gi|356561679|ref|XP_003549107.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g12775, mitochondrial-like [Glycine max]
          Length = 750

 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 90/339 (26%), Positives = 163/339 (48%), Gaps = 9/339 (2%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           +K+ +F + + +Q  F +  + Y   +  L    + + + +L  ++  + ++ D + Y+T
Sbjct: 150 KKALYFHDQVVAQG-FQLNQVSYRTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNT 208

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           II    +  L  +A + +  M   G+ P+ VTY+A++  +   G ++E  SL        
Sbjct: 209 IIHSLCKNKLLGDACDLYSEMIVKGISPNVVTYNALVYGFCIMGHLKEAFSLLNEMKLKN 268

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
             PD   F+ L    G+ G     + VL  M    ++P++V YN+L++      K   A+
Sbjct: 269 INPDVCTFNTLIDALGKEGKMKAAKIVLAVMMKACIKPDVVTYNSLIDGYFFLNKVKNAK 328

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
            +F  M +SG+TP+ +T T +I    K +   +A+ L+E M+      D + Y +L++  
Sbjct: 329 YVFYSMAQSGVTPNVRTYTTMIDGLCKEKMVDEAMSLFEEMKYKNMIPDIVTYTSLIDGL 388

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
                +E A  L + MK     +PD YSYT +L+    GG ++NA E F+ +   G  +N
Sbjct: 389 CKNHHLERAIALCKKMK-EQGIQPDVYSYTILLDALCKGGRLENAKEFFQRLLVKGYHLN 447

Query: 468 VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLC 506
           V     +I  L KA    DL   FG ++D   K + + C
Sbjct: 448 VQTYNVMINGLCKA----DL---FGEAMDLKSKMEGKGC 479



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 89/390 (22%), Positives = 180/390 (46%), Gaps = 21/390 (5%)

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           P  T  +N  + SL   + +  +  L  +  SN    D  T + ++ C         A  
Sbjct: 60  PPPTFHFNYILSSLVNNKHYPTVISLFKKFESNGATPDLCTLNILMNCFCHLTHITFAFS 119

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
               + K G  P+ +T + ++      G++++ L  +++ VA G++ + +++  L     
Sbjct: 120 VLANILKRGYHPNAITLNTLIKGLCFRGEIKKALYFHDQVVAQGFQLNQVSYRTLINGLC 179

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
           ++G+   +  +L++++   V+P++V+YNT++ ++ K    G A  L+ EM+  G++P+  
Sbjct: 180 KTGETKAVARLLRKLEGHSVKPDVVMYNTIIHSLCKNKLLGDACDLYSEMIVKGISPNVV 239

Query: 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
           T  AL+  +      K+A  L   M+      D   +NTL++     G ++ A+ +   M
Sbjct: 240 TYNALVYGFCIMGHLKEAFSLLNEMKLKNINPDVCTFNTLIDALGKEGKMKAAKIVLAVM 299

Query: 424 KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483
            +    KPD  +Y ++++ Y     V NA  +F  M++ GV  NV   T +I  L K + 
Sbjct: 300 -MKACIKPDVVTYNSLIDGYFFLNKVKNAKYVFYSMAQSGVTPNVRTYTTMIDGLCKEKM 358

Query: 484 IDDLVRVFGVSIDRGVKPD--------DRLC--GCLLSVVSLCETSEDVGKVITCLQQAN 533
           +D+ + +F     + + PD        D LC    L   ++LC+  ++        Q   
Sbjct: 359 VDEAMSLFEEMKYKNMIPDIVTYTSLIDGLCKNHHLERAIALCKKMKE--------QGIQ 410

Query: 534 PKLVAFLNLIEDNSTG--FENIKEEFRNVI 561
           P + ++  L++    G   EN KE F+ ++
Sbjct: 411 PDVYSYTILLDALCKGGRLENAKEFFQRLL 440



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 153/353 (43%), Gaps = 25/353 (7%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F  +K +N+ P + + Y   +  L      +    L  +M    I+ D  +Y+ ++   
Sbjct: 365 LFEEMKYKNMIP-DIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDAL 423

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +    + A E+F+R+   G   +  TY+ +++   K+    E + L  +    G  PD 
Sbjct: 424 CKGGRLENAKEFFQRLLVKGYHLNVQTYNVMINGLCKADLFGEAMDLKSKMEGKGCMPDA 483

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQ-----------------------PNLVV 329
           I F  +     E  + D    +L+EM + G+Q                       P++V 
Sbjct: 484 ITFKTIICALFEKDENDKAEKILREMIARGLQEARKVRLKEAKIVLAVMTKACIKPDVVT 543

Query: 330 YNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMR 389
           Y TL++      +   A+ +F  M + G+TP+ +  T +I    K +   +A+ L+E M+
Sbjct: 544 YGTLMDGYFLVNELKHAKYVFYSMAQMGVTPNVQCYTIMIDGLCKKKTVDEAMSLFEEMK 603

Query: 390 ENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNV 449
                 + + Y +L++       +E A  L ++MK     +PD YSYT +L+     G +
Sbjct: 604 HKNMFPNIVTYTSLIDALCKNHHLERAIALLKEMK-EHGIQPDVYSYTILLDGLCKSGRL 662

Query: 450 DNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           + A E+F+ +   G  +NV   T +I  L KA   D+ + +     D+G  PD
Sbjct: 663 EGAKEIFQRLLVKGYHLNVQVYTAMINELCKAGLFDEALDLQXKMEDKGCMPD 715



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 138/304 (45%), Gaps = 28/304 (9%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           TY+T+I    +  + DEA+  FE M    ++PD VTY++++D   K+  +E  ++L ++ 
Sbjct: 345 TYTTMIDGLCKEKMVDEAMSLFEEMKYKNMIPDIVTYTSLIDGLCKNHHLERAIALCKKM 404

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
              G +PD  ++++L     + G  +  +   Q +   G   N+  YN ++  + KA   
Sbjct: 405 KEQGIQPDVYSYTILLDALCKGGRLENAKEFFQRLLVKGYHLNVQTYNVMINGLCKADLF 464

Query: 344 GLARSLFDEMVESGLTPDEKTLTALI-KIYGK--------------ARWAKDALELWERM 388
           G A  L  +M   G  PD  T   +I  ++ K              AR  ++A ++  R+
Sbjct: 465 GEAMDLKSKMEGKGCMPDAITFKTIICALFEKDENDKAEKILREMIARGLQEARKV--RL 522

Query: 389 RENKWPM----------DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTA 438
           +E K  +          D + Y TL++    +  ++ A+ +F  M       P+   YT 
Sbjct: 523 KEAKIVLAVMTKACIKPDVVTYGTLMDGYFLVNELKHAKYVFYSMAQMG-VTPNVQCYTI 581

Query: 439 MLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRG 498
           M++       VD A+ LFEEM    +  N++  T LI  L K   ++  + +     + G
Sbjct: 582 MIDGLCKKKTVDEAMSLFEEMKHKNMFPNIVTYTSLIDALCKNHHLERAIALLKEMKEHG 641

Query: 499 VKPD 502
           ++PD
Sbjct: 642 IQPD 645



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 82/346 (23%), Positives = 152/346 (43%), Gaps = 25/346 (7%)

Query: 177 IKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCN 236
           +K Q + P +   Y + + +L  G + +  ++    ++     L+  TY+ +I    + +
Sbjct: 404 MKEQGIQP-DVYSYTILLDALCKGGRLENAKEFFQRLLVKGYHLNVQTYNVMINGLCKAD 462

Query: 237 LFDEAIEWFERMYKTGLMPDEVTYSAIL-DVYAK--SGKVEEVL-SLYERGVASG----- 287
           LF EA++   +M   G MPD +T+  I+  ++ K  + K E++L  +  RG+        
Sbjct: 463 LFGEAMDLKSKMEGKGCMPDAITFKTIICALFEKDENDKAEKILREMIARGLQEARKVRL 522

Query: 288 --------------WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTL 333
                          KPD + +  L   +    +    +YV   M  +GV PN+  Y  +
Sbjct: 523 KEAKIVLAVMTKACIKPDVVTYGTLMDGYFLVNELKHAKYVFYSMAQMGVTPNVQCYTIM 582

Query: 334 LEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKW 393
           ++ + K      A SLF+EM    + P+  T T+LI    K    + A+ L + M+E+  
Sbjct: 583 IDGLCKKKTVDEAMSLFEEMKHKNMFPNIVTYTSLIDALCKNHHLERAIALLKEMKEHGI 642

Query: 394 PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAI 453
             D   Y  LL+     G +E A+ +F+ + +  Y   +   YTAM+N     G  D A+
Sbjct: 643 QPDVYSYTILLDGLCKSGRLEGAKEIFQRLLVKGY-HLNVQVYTAMINELCKAGLFDEAL 701

Query: 454 ELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGV 499
           +L  +M + G   + +    +I  L +    D   ++    I RG+
Sbjct: 702 DLQXKMEDKGCMPDAVTFDIIIWALFEKDENDKAEKILXEMIARGL 747



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 84/382 (21%), Positives = 157/382 (41%), Gaps = 22/382 (5%)

Query: 241 AIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGK 300
           A+  F+RM      P    ++ IL     +     V+SL+++  ++G  PD    ++L  
Sbjct: 47  AVASFDRMLLMRPPPPTFHFNYILSSLVNNKHYPTVISLFKKFESNGATPDLCTLNILMN 106

Query: 301 MFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTP 360
            F           VL  +   G  PN +  NTL++ +   G+   A    D++V  G   
Sbjct: 107 CFCHLTHITFAFSVLANILKRGYHPNAITLNTLIKGLCFRGEIKKALYFHDQVVAQGFQL 166

Query: 361 DEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLF 420
           ++ +   LI    K    K    L  ++  +    D ++YNT+++      L+ +A  L+
Sbjct: 167 NQVSYRTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIIHSLCKNKLLGDACDLY 226

Query: 421 EDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK 480
            +M +     P+  +Y A++  +   G++  A  L  EM    +  +V     LI  LGK
Sbjct: 227 SEMIVKGI-SPNVVTYNALVYGFCIMGHLKEAFSLLNEMKLKNINPDVCTFNTLIDALGK 285

Query: 481 ARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVA 538
             ++     V  V +   +KPD      L+         ++   V   + Q+   P +  
Sbjct: 286 EGKMKAAKIVLAVMMKACIKPDVVTYNSLIDGYFFLNKVKNAKYVFYSMAQSGVTPNVRT 345

Query: 539 FLNLI---------EDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLID-ICRNRNLNER 588
           +  +I         ++  + FE +K  ++N+I D            LID +C+N +L ER
Sbjct: 346 YTTMIDGLCKEKMVDEAMSLFEEMK--YKNMIPDIVTYTS------LIDGLCKNHHL-ER 396

Query: 589 AHELLYLGTLYGLYPGLHNKTL 610
           A  L       G+ P +++ T+
Sbjct: 397 AIALCKKMKEQGIQPDVYSYTI 418


>gi|302770561|ref|XP_002968699.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
 gi|300163204|gb|EFJ29815.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
          Length = 544

 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 106/391 (27%), Positives = 188/391 (48%), Gaps = 12/391 (3%)

Query: 173 FFNWIKSQNLFP-METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITC 231
           FF  +K+  + P +E+  Y++ + +L    +      L + M  +    D +TY+ ++  
Sbjct: 163 FFKEMKASGVEPDLES--YHILLSALSDSGRMAEAHALFSAMTCSP---DIMTYNVLMDG 217

Query: 232 AKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291
             +     EA    + + K G  P+  TYS I++ Y K  KVEE   ++ + + S   P+
Sbjct: 218 YCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPN 277

Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA-GKPGLARSLF 350
            + F+ L   F ++G  +    +  EM+ +G +  +V YNTL++++ K  G    A  LF
Sbjct: 278 AVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVDLF 337

Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
           +++  +GLTP   T  +LI+ +  AR   +A++ ++ M E K   + I Y+ L++    +
Sbjct: 338 NKLEGAGLTPTIVTYNSLIQGFCDARRLSEAMQYFDEM-EGKCAPNVITYSILIDGLCKV 396

Query: 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG 470
             ++EA +  EDMK   Y  P   +Y  ++N +   G + +A+  FE+M   G A N + 
Sbjct: 397 RRMKEAAKTLEDMKAHGY-TPTVVTYGGLINGFCKCGELKSALLFFEKMKLAGCAPNTVI 455

Query: 471 CTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQ 530
              LI  L KA R +D +R+       G KPD     CL+S +      ED  ++   + 
Sbjct: 456 FNTLIDGLCKAERANDGLRLLCHMHAEGCKPDVITYNCLISGLCSANRVEDAQRLFDGMA 515

Query: 531 QANPKLVAFLNLIEDNSTGFENIKEEFRNVI 561
            A P +  F  LI       +   EE RN++
Sbjct: 516 CA-PNVTTFNFLIRGLCA--QKKVEEARNIL 543



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 74/331 (22%), Positives = 140/331 (42%), Gaps = 43/331 (12%)

Query: 191 NVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYK 250
           N  +  L   R+     +L  E+++     +  TY+ +I    +     +A+  F  M  
Sbjct: 1   NALLSGLVSARKHDQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKS 60

Query: 251 TGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY-D 309
           +GL+P+  T + +L    + G++   L L+    A  + P   + ++L + F  +G   D
Sbjct: 61  SGLLPNASTMNTLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRVRD 120

Query: 310 GIRYV--------------------------------------LQEMKSLGVQPNLVVYN 331
            + ++                                       +EMK+ GV+P+L  Y+
Sbjct: 121 ALAHLQDMRKSSSSVATGTYNLVLKGLCWENKSANRLEQAMEFFKEMKASGVEPDLESYH 180

Query: 332 TLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN 391
            LL A+  +G+   A +LF  M  S   PD  T   L+  Y K     +A  L + + + 
Sbjct: 181 ILLSALSDSGRMAEAHALFSAMTCS---PDIMTYNVLMDGYCKIGQTYEAQSLMKEILKA 237

Query: 392 KWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDN 451
            +  +   Y+ ++N    +  VEEA  +F  M  S+ C P+  ++  ++  +   G +++
Sbjct: 238 GYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESN-CVPNAVTFNTLIAGFCKAGMLED 296

Query: 452 AIELFEEMSELGVAINVMGCTCLIQCLGKAR 482
           AI+LF EM ++G    ++    LI  L K R
Sbjct: 297 AIKLFAEMEKIGCKATIVTYNTLIDSLCKKR 327



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/268 (23%), Positives = 117/268 (43%), Gaps = 8/268 (2%)

Query: 239 DEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
           D+A+  F+ +      P+  TY+ ++  + K G++ + +S++    +SG  P+    + L
Sbjct: 14  DQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMNTL 73

Query: 299 GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
                E G       + +EM++    P    +N LL     AG+   A +   +M +S  
Sbjct: 74  LLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRVRDALAHLQDMRKSSS 133

Query: 359 TPDEKTLTALIKIY----GKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
           +    T   ++K        A   + A+E ++ M+ +    D   Y+ LL+  +D G + 
Sbjct: 134 SVATGTYNLVLKGLCWENKSANRLEQAMEFFKEMKASGVEPDLESYHILLSALSDSGRMA 193

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
           EA  LF  M     C PD  +Y  +++ Y   G    A  L +E+ + G   NV   + +
Sbjct: 194 EAHALFSAMT----CSPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSII 249

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           I C  K  ++++   VF   I+    P+
Sbjct: 250 INCYCKLDKVEEAWEVFMKMIESNCVPN 277


>gi|359481393|ref|XP_002276762.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Vitis vinifera]
          Length = 625

 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 87/312 (27%), Positives = 156/312 (50%), Gaps = 1/312 (0%)

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
           ++L  EM    IE D   Y++II+C  R      A+  F+ M   GL+P   TY A++  
Sbjct: 315 QRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHG 374

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
             K+G++E    L       G   +P+ F+ L   + ESG  D    +   M+  G++ +
Sbjct: 375 VCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESD 434

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
           +  YN++   + K  +   A+ L   MVE G++P+  + T LI IY K     +A  ++ 
Sbjct: 435 VFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFR 494

Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
            M E     + I YN L++  +  G ++EA +L ++++      PD Y+ T++++     
Sbjct: 495 EMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLI-PDVYTCTSLIHGECID 553

Query: 447 GNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLC 506
           G VD A++LF+EM + G+  NV+  T +I  L K  R ++  +++    + G+ PDD + 
Sbjct: 554 GKVDMALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFKLYDEMKETGLTPDDTVY 613

Query: 507 GCLLSVVSLCET 518
             L+  +   E+
Sbjct: 614 SSLVGSLHSAES 625



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 134/276 (48%), Gaps = 8/276 (2%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           +++   F+ +  + L P    +  +     + G Q +  + L NEM    I+L+ + ++T
Sbjct: 347 KRALVLFDEMTDKGLIPSAHTYGALIHGVCKAG-QMEAAQMLVNEMQGKGIDLNPVIFNT 405

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           +I       + DEA+     M K GL  D   Y++I     K  + +E   L    V  G
Sbjct: 406 LIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERG 465

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
             P+ ++F+ L  ++ + G++   + V +EM+  G  PN++ YN L++   K G    A 
Sbjct: 466 VSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAH 525

Query: 348 SLFDEMVESGLTPDEKTLTALIK---IYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
            L DE+   GL PD  T T+LI    I GK      AL+L++ M +     + + Y  ++
Sbjct: 526 KLKDELENRGLIPDVYTCTSLIHGECIDGKVDM---ALKLFDEMPQRGLVPNVVTYTAMI 582

Query: 405 NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
           +  +  G  EEA +L+++MK +    PD+  Y++++
Sbjct: 583 SGLSKDGRSEEAFKLYDEMKETGL-TPDDTVYSSLV 617



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 92/392 (23%), Positives = 169/392 (43%), Gaps = 6/392 (1%)

Query: 205 LIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAIL 264
           L++   NE   N  +     +  +        +F EA+E FE M K G   DE +    L
Sbjct: 138 LVDDACNESKCNRAKFKEKFFDLLFRVYADNKMFGEALEAFEHMEKKGFHIDERSCLVYL 197

Query: 265 DVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQ 324
               + G+V+  L  + R V    +    + +++     + GD +  R ++ E+ + GV+
Sbjct: 198 LALRRGGQVDSCLRFFRRMVNLDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVK 257

Query: 325 PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384
            N+V YN  +E   K    G    +   M + G+  +  T T LI  +      ++A  L
Sbjct: 258 ANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRL 317

Query: 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYG 444
           +E MRE     D  +Y ++++     G V+ A  LF++M       P  ++Y A+++   
Sbjct: 318 FEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLI-PSAHTYGALIHGVC 376

Query: 445 SGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR 504
             G ++ A  L  EM   G+ +N +    LI    ++  +D+ +R+  V   +G++ D  
Sbjct: 377 KAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVF 436

Query: 505 LCGCLLS-VVSLCETSEDVGKVITCLQQA-NPKLVAFLNLIED--NSTGFENIKEEFRNV 560
               + S +  L    E  G + + +++  +P  ++F  LI+       F   K  FR +
Sbjct: 437 AYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREM 496

Query: 561 IKDTEVDARRPFCNCLIDICRNRNLNERAHEL 592
            +   V     + N LID    R   + AH+L
Sbjct: 497 EEKGNVPNIITY-NVLIDGYSKRGNMKEAHKL 527



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/315 (22%), Positives = 130/315 (41%), Gaps = 5/315 (1%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           + + V   +  FG   +  E     M      +D  +    +   +R    D  + +F R
Sbjct: 160 LLFRVYADNKMFGEALEAFEH----MEKKGFHIDERSCLVYLLALRRGGQVDSCLRFFRR 215

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M    +     + + +LD   K G VE    L +   A G K + + ++   + + +  D
Sbjct: 216 MVNLDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLD 275

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
             G+  +L  M+  GV  N+V Y  L+      GK   A+ LF+EM E G+  D    T+
Sbjct: 276 LGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTS 335

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           +I    ++   K AL L++ M +         Y  L++     G +E A+ L  +M+   
Sbjct: 336 IISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQ-GK 394

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
               +   +  +++ Y   G VD A+ L   M + G+  +V     +   L K  R D+ 
Sbjct: 395 GIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEA 454

Query: 488 VRVFGVSIDRGVKPD 502
             +    ++RGV P+
Sbjct: 455 KGLLFSMVERGVSPN 469


>gi|222613080|gb|EEE51212.1| hypothetical protein OsJ_32033 [Oryza sativa Japonica Group]
          Length = 1144

 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 142/292 (48%), Gaps = 1/292 (0%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
           +EM+   I  + +TYS+II    +    D+A+E    M K G+MP+  TY++I+  Y  S
Sbjct: 223 HEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSS 282

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
           G+ +E +   ++  + G +PD + ++ L     ++G     R +   M   G++P +  Y
Sbjct: 283 GQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTY 342

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
            TLL+     G       L D MV +G+ P+    + LI  Y K      A+ ++ +MR+
Sbjct: 343 GTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQ 402

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
                D + Y T++ +    G VE+A R FE M + +   P N  Y ++++        D
Sbjct: 403 QGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQM-IDERLSPGNIVYNSLIHSLCIFDKWD 461

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            A EL  EM + G+ ++ +    +I    K  R+ +  ++F + +  GVKPD
Sbjct: 462 KAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPD 513



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 151/304 (49%), Gaps = 10/304 (3%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTM----KSLRFGRQFQLIEQLANEMVSNEIELDNIT 224
           ++   F+ ++ Q L P +T+ Y   +    KS R     +  EQ+ +E +S      NI 
Sbjct: 392 QAMLVFSKMRQQGLNP-DTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSP----GNIV 446

Query: 225 YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
           Y+++I      + +D+A E    M   G+  D + +++I+D + K G+V E   L++  V
Sbjct: 447 YNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMV 506

Query: 285 ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344
             G KPD I +S L   +  +G  D    +L  M S+G++P+ V YNTL+    K  +  
Sbjct: 507 RIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRME 566

Query: 345 LARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
            A  LF EM  SG++PD  T   +++   + R    A EL+  + E+   ++   YN +L
Sbjct: 567 DALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIIL 626

Query: 405 NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
           +      L +EA R+F+++ L+D  + +  ++  M+      G  D A +LF  +S  G+
Sbjct: 627 HGLCKNNLTDEALRMFQNLCLTDL-QLETRTFNIMIGALLKVGRNDEAKDLFAALSANGL 685

Query: 465 AINV 468
             +V
Sbjct: 686 VPDV 689



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 122/276 (44%), Gaps = 7/276 (2%)

Query: 241 AIEWFERMYKTG---LMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS- 296
           A+  + RM + G   + P+  TY  ++     +G+++   +     +  G++ D IAF+ 
Sbjct: 72  AVSRYNRMARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTP 131

Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356
           +L  +  +    D +  VL+ M  LG  PN+  YN LL+ +    +   A  L   M + 
Sbjct: 132 LLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDD 191

Query: 357 G--LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
           G    PD  + T +I  + K      A   +  M +     + + Y++++        ++
Sbjct: 192 GGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMD 251

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
           +A  +   M + +   P+  +Y ++++ Y S G    AI   ++M   GV  +V+    L
Sbjct: 252 KAMEVLTSM-VKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSL 310

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
           +  L K  R  +  ++F     RG+KP+    G LL
Sbjct: 311 MDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLL 346



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 102/241 (42%), Gaps = 45/241 (18%)

Query: 172 FFFNWIKSQNLF--------PMETIFYNVTMKS-LRFGRQFQLIEQLANEMVSNEIELDN 222
            F  W K++ L          ++TIF+N  + S  + GR  +  E+L + MV   ++ D 
Sbjct: 456 IFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIE-SEKLFDLMVRIGVKPDI 514

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           ITYST+I         DEA +    M   G+ PD VTY+ +++ Y K  ++E+ L L+  
Sbjct: 515 ITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFRE 574

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLE------- 335
             +SG  PD I ++++ +   ++      + +   +   G Q  L  YN +L        
Sbjct: 575 MESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNL 634

Query: 336 ----------------------------AMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
                                       A+ K G+   A+ LF  +  +GL PD +T + 
Sbjct: 635 TDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSL 694

Query: 368 L 368
           +
Sbjct: 695 M 695



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/174 (21%), Positives = 83/174 (47%), Gaps = 1/174 (0%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           + +   F  ++S  + P + I YN+ ++ L   R+    ++L   +  +  +L+  TY+ 
Sbjct: 566 EDALVLFREMESSGVSP-DIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNI 624

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           I+    + NL DEA+  F+ +  T L  +  T++ ++    K G+ +E   L+    A+G
Sbjct: 625 ILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANG 684

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG 341
             PD   +S++ +   E G  + +  +   M+  G   N  + N+++  + + G
Sbjct: 685 LVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRG 738



 Score = 41.6 bits (96), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 44/237 (18%), Positives = 98/237 (41%), Gaps = 43/237 (18%)

Query: 177 IKSQNLFPM--------ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           I+S+ LF +        + I Y+  +       +     +L   MVS  ++ D +TY+T+
Sbjct: 496 IESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTL 555

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAIL-------------DVYA------- 268
           I    + +  ++A+  F  M  +G+ PD +TY+ IL             ++Y        
Sbjct: 556 INGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGT 615

Query: 269 ---------------KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRY 313
                          K+   +E L +++    +  + +   F+++     + G  D  + 
Sbjct: 616 QLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKD 675

Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK 370
           +   + + G+ P++  Y+ + E + + G       LF  M E+G T + + L ++++
Sbjct: 676 LFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVR 732


>gi|224059754|ref|XP_002299984.1| predicted protein [Populus trichocarpa]
 gi|222847242|gb|EEE84789.1| predicted protein [Populus trichocarpa]
          Length = 610

 Score =  129 bits (323), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 93/339 (27%), Positives = 173/339 (51%), Gaps = 10/339 (2%)

Query: 168 QKSYFFFNWIKSQNLFPMETIF-YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           ++++   N +  + L P  ++F YN  +  L    ++   + +  EM++  +  D  TY+
Sbjct: 170 EEAFEIMNSMADKGLKP--SLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYN 227

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++  + R + F EA E F  M + G++PD V++S+++ V++++  +++ L  +      
Sbjct: 228 TLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKF 287

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G  PD + ++VL   +  +G+      +  EM   G   +++ YNT+L  + K      A
Sbjct: 288 GLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDA 347

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
             LFDEMVE G  PD  T T LI  + +      AL L+  M +     D + YNTL++ 
Sbjct: 348 DKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDG 407

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
              +G +E+A  L++ M +S    P++ +Y  ++N Y S G+V  A  L++ M E G+  
Sbjct: 408 FCKVGEMEKASELWDGM-ISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKP 466

Query: 467 NVMGCTCLIQCL---GKARRIDDLVRVFGVSIDRGVKPD 502
            ++ C  +I+     G + + D+ +   G  I +GV PD
Sbjct: 467 TLVTCNTVIKGYCRSGDSSKADEFL---GRMIAKGVAPD 502



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 151/321 (47%), Gaps = 1/321 (0%)

Query: 191 NVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYK 250
           N+ + +L    +F  ++   +EM  N I  D +TY+T+I    R  L +EA E    M  
Sbjct: 122 NIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAYCREGLLEEAFEIMNSMAD 181

Query: 251 TGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDG 310
            GL P   TY+AI++   K G+      +    +  G  PD   ++ L        ++  
Sbjct: 182 KGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNFSE 241

Query: 311 IRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK 370
            + +  EM   GV P+LV +++L+    +      A   F +M + GL PD    T L+ 
Sbjct: 242 AKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMH 301

Query: 371 IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCK 430
            Y +     +AL++ + M E    +D I YNT+LN      ++ +A++LF++M +     
Sbjct: 302 GYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEM-VERGAL 360

Query: 431 PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRV 490
           PD Y++T +++ +   GN+  A+ LF  M++  +  +++    LI    K   ++    +
Sbjct: 361 PDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASEL 420

Query: 491 FGVSIDRGVKPDDRLCGCLLS 511
           +   I R + P+    G L++
Sbjct: 421 WDGMISRKIFPNHITYGILIN 441



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 140/299 (46%), Gaps = 1/299 (0%)

Query: 204 QLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAI 263
           +L  ++  E+V + IEL+  T + ++    +   FD+   +   M   G+  D VTY+ +
Sbjct: 100 ELAWEVHREVVRSGIELNVYTLNIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTL 159

Query: 264 LDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGV 323
           +  Y + G +EE   +       G KP    ++ +     + G Y   + +L EM ++G+
Sbjct: 160 IGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGL 219

Query: 324 QPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALE 383
            P+   YNTLL    +      A+ +F EM+  G+ PD  + ++LI ++ + R    AL 
Sbjct: 220 SPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALV 279

Query: 384 LWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIY 443
            +  M++     D ++Y  L++     G + EA ++ ++M L   C  D  +Y  +LN  
Sbjct: 280 YFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEM-LEQGCVLDVIAYNTILNGL 338

Query: 444 GSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
                + +A +LF+EM E G   +    T LI    +   +   + +FG    R +KPD
Sbjct: 339 CKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPD 397



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 89/362 (24%), Positives = 159/362 (43%), Gaps = 14/362 (3%)

Query: 148 IPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIE 207
           +P   +  + + + +  +   ++  +F  +K   L P + + Y V M    + R   ++E
Sbjct: 255 VPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVP-DNVIYTVLMHG--YCRNGNMLE 311

Query: 208 QLA--NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
            L   +EM+     LD I Y+TI+    +  +  +A + F+ M + G +PD  T++ ++ 
Sbjct: 312 ALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIH 371

Query: 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325
            + + G + + LSL+        KPD +A++ L   F + G+ +    +   M S  + P
Sbjct: 372 GHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFP 431

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
           N + Y  L+ A    G    A  L+D M+E G+ P   T   +IK Y ++  +  A E  
Sbjct: 432 NHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFL 491

Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAER----LFEDMKLSDYCKPDNYSYTAMLN 441
            RM       D I YNTL+N     G V E       L+ +    +   PD  +Y  ++N
Sbjct: 492 GRMIAKGVAPDHISYNTLIN-----GFVREDNMDKAFLWINKMEKEGLLPDIITYNVVMN 546

Query: 442 IYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
            +   G +  A  +  +M E G+  +    T LI        +++  R     + RG  P
Sbjct: 547 GFCRQGRMQEAELVLRKMIEKGINPDRSTYTALINGHVTQDNLNEAFRFHDEMLQRGFAP 606

Query: 502 DD 503
           DD
Sbjct: 607 DD 608



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 76/337 (22%), Positives = 148/337 (43%), Gaps = 39/337 (11%)

Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS 261
           + +++E L + M  N    +N+ +  +I    +     E  E F  +   G +      +
Sbjct: 29  RVEVVEALVSSMCGN-CGTNNLVFDLLIRTYVQARKLREGTEAFRILRSKGYLVSINACN 87

Query: 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
           ++L    K   VE    ++   V SG + +    +++     + G +D ++  L EM+  
Sbjct: 88  SLLGGLVKIDWVELAWEVHREVVRSGIELNVYTLNIMVNALCKDGKFDDVKSFLSEMEGN 147

Query: 322 GVQPNLVVYNTLLEAMGKAG-----------------KPGL------------------A 346
           G+  ++V YNTL+ A  + G                 KP L                  A
Sbjct: 148 GIYADMVTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARA 207

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW-ERMRENKWPMDFILYNTLLN 405
           + +  EM+  GL+PD  T   L+    +     +A E++ E +R+   P D + +++L+ 
Sbjct: 208 KGILIEMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVP-DLVSFSSLIA 266

Query: 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
           + +    +++A   F DMK      PDN  YT +++ Y   GN+  A+++ +EM E G  
Sbjct: 267 VFSRNRHLDQALVYFRDMKKFGLV-PDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCV 325

Query: 466 INVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           ++V+    ++  L K + + D  ++F   ++RG  PD
Sbjct: 326 LDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPD 362



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 82/197 (41%), Gaps = 1/197 (0%)

Query: 318 MKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARW 377
           ++S G   ++   N+LL  + K     LA  +  E+V SG+  +  TL  ++    K   
Sbjct: 74  LRSKGYLVSINACNSLLGGLVKIDWVELAWEVHREVVRSGIELNVYTLNIMVNALCKDGK 133

Query: 378 AKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYT 437
             D       M  N    D + YNTL+      GL+EEA  +   M      KP  ++Y 
Sbjct: 134 FDDVKSFLSEMEGNGIYADMVTYNTLIGAYCREGLLEEAFEIMNSMA-DKGLKPSLFTYN 192

Query: 438 AMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDR 497
           A++N     G    A  +  EM  +G++ +      L+    +     +   +FG  + +
Sbjct: 193 AIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQ 252

Query: 498 GVKPDDRLCGCLLSVVS 514
           GV PD      L++V S
Sbjct: 253 GVVPDLVSFSSLIAVFS 269



 Score = 40.4 bits (93), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 1/90 (1%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           K++ + N ++ + L P + I YNV M       + Q  E +  +M+   I  D  TY+ +
Sbjct: 521 KAFLWINKMEKEGLLP-DIITYNVVMNGFCRQGRMQEAELVLRKMIEKGINPDRSTYTAL 579

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEV 258
           I      +  +EA  + + M + G  PD+V
Sbjct: 580 INGHVTQDNLNEAFRFHDEMLQRGFAPDDV 609


>gi|255661204|gb|ACU25771.1| pentatricopeptide repeat-containing protein [Citharexylum
           ligustrinum]
          Length = 426

 Score =  129 bits (323), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 89/287 (31%), Positives = 147/287 (51%), Gaps = 1/287 (0%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           TYST+IT   +  LFD+A+ W + M +  +  D V YS ++++  K     + +S++ R 
Sbjct: 11  TYSTLITHFGKEGLFDDALSWLQXMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 70

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
             SG  PD +A++ +  +FG++  +   R ++ EMK+ GV P+ V Y+TLL    +  K 
Sbjct: 71  KRSGITPDXVAYNSMINVFGKAKLFKEARSLISEMKTAGVXPDTVSYSTLLTMYVENQKF 130

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
             A S+F EM E   + D  T   +I +YG+   AK+A +L+  MR+     + I YNTL
Sbjct: 131 LEALSVFAEMREIKCSLDLTTCNIMIDVYGQLDMAKEADKLFWSMRKIGIEPNVISYNTL 190

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           L +  D  L  EA  LF  M+  +  + +  +Y  M+ IYG     + A  L +EM   G
Sbjct: 191 LRVYGDAELFGEAIHLFRLMQRKN-IEQNVVTYNTMMMIYGKTLEHEKANNLIQEMHNXG 249

Query: 464 VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
           +  N +  + +I   GK  ++D    +F      GV+ D  L   ++
Sbjct: 250 IEPNAITYSTIISIWGKVGKLDRAAXLFQKLRSSGVEIDQVLYQTMI 296



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 82/345 (23%), Positives = 164/345 (47%), Gaps = 6/345 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K   + P + + YN  +      + F+    L +EM +  +  D ++YS
Sbjct: 60  YSKAISIFSRLKRSGITP-DXVAYNSMINVFGKAKLFKEARSLISEMKTAGVXPDTVSYS 118

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +     D  T + ++DVY +    +E   L+      
Sbjct: 119 TLLTMYVENQKFLEALSVFAEMREIKCSLDLTTCNIMIDVYGQLDMAKEADKLFWSMRKI 178

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ I+++ L +++G++  +    ++ + M+   ++ N+V YNT++   GK  +   A
Sbjct: 179 GIEPNVISYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKA 238

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R +   +D +LY T++  
Sbjct: 239 NNLIQEMHNXGIEPNAITYSTIISIWGKVGKLDRAAXLFQKLRSSGVEIDQVLYQTMIVA 298

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K     +PDN       +I    G ++ A  +F +  + G   
Sbjct: 299 YERAGLVAHAKRLLHELK-----RPDNIPRDTAXHILAGAGRIEEATWVFRQAIDAGEVK 353

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
           ++   + +I    K ++  ++V VF      G  PD  +   +L+
Sbjct: 354 DITVFSRMIDLFSKYKKYANVVEVFDKMRGLGYFPDSNVIALVLN 398



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 144/286 (50%), Gaps = 3/286 (1%)

Query: 198 RFGRQFQLIEQLA--NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMP 255
            FG++    + L+    M  + +  D + YS +I  +++   + +AI  F R+ ++G+ P
Sbjct: 18  HFGKEGLFDDALSWLQXMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGITP 77

Query: 256 DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVL 315
           D V Y+++++V+ K+   +E  SL      +G  PD +++S L  M+ E+  +     V 
Sbjct: 78  DXVAYNSMINVFGKAKLFKEARSLISEMKTAGVXPDTVSYSTLLTMYVENQKFLEALSVF 137

Query: 316 QEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA 375
            EM+ +    +L   N +++  G+      A  LF  M + G+ P+  +   L+++YG A
Sbjct: 138 AEMREIKCSLDLTTCNIMIDVYGQLDMAKEADKLFWSMRKIGIEPNVISYNTLLRVYGDA 197

Query: 376 RWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYS 435
               +A+ L+  M+      + + YNT++ +       E+A  L ++M  +   +P+  +
Sbjct: 198 ELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANNLIQEMH-NXGIEPNAIT 256

Query: 436 YTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
           Y+ +++I+G  G +D A  LF+++   GV I+ +    +I    +A
Sbjct: 257 YSTIISIWGKVGKLDRAAXLFQKLRSSGVEIDQVLYQTMIVAYERA 302



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 98/202 (48%), Gaps = 1/202 (0%)

Query: 290 PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSL 349
           P+   +S L   FG+ G +D     LQ M+   V  +LV+Y+ L+E   K      A S+
Sbjct: 7   PERYTYSTLITHFGKEGLFDDALSWLQXMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66

Query: 350 FDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCAD 409
           F  +  SG+TPD     ++I ++GKA+  K+A  L   M+      D + Y+TLL M  +
Sbjct: 67  FSRLKRSGITPDXVAYNSMINVFGKAKLFKEARSLISEMKTAGVXPDTVSYSTLLTMYVE 126

Query: 410 IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVM 469
                EA  +F +M+    C  D  +   M+++YG       A +LF  M ++G+  NV+
Sbjct: 127 NQKFLEALSVFAEMR-EIKCSLDLTTCNIMIDVYGQLDMAKEADKLFWSMRKIGIEPNVI 185

Query: 470 GCTCLIQCLGKARRIDDLVRVF 491
               L++  G A    + + +F
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLF 207



 Score = 72.8 bits (177), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 51/238 (21%), Positives = 111/238 (46%), Gaps = 31/238 (13%)

Query: 218 IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL 277
           IE + I+Y+T++       LF EAI  F  M +  +  + VTY+ ++ +Y K+ + E+  
Sbjct: 180 IEPNVISYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKAN 239

Query: 278 SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
           +L +     G +P+ I +S +  ++G+ G  D    + Q+++S GV+ + V+Y T++ A 
Sbjct: 240 NLIQEMHNXGIEPNAITYSTIISIWGKVGKLDRAAXLFQKLRSSGVEIDQVLYQTMIVAY 299

Query: 338 GKAGKPGLARSLFDEM-------------------------------VESGLTPDEKTLT 366
            +AG    A+ L  E+                               +++G   D    +
Sbjct: 300 ERAGLVAHAKRLLHELKRPDNIPRDTAXHILAGAGRIEEATWVFRQAIDAGEVKDITVFS 359

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
            +I ++ K +   + +E++++MR   +  D  +   +LN    +   ++A  ++ +M+
Sbjct: 360 RMIDLFSKYKKYANVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKAHXVYMNMQ 417



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 52/249 (20%), Positives = 106/249 (42%), Gaps = 5/249 (2%)

Query: 142 LRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGR 201
           +R I   P+  +    L +    + + ++   F  ++ +N+     + YN  M       
Sbjct: 175 MRKIGIEPNVISYNTLLRVYGDAELFGEAIHLFRLMQRKNI-EQNVVTYNTMMMIYGKTL 233

Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS 261
           + +    L  EM +  IE + ITYSTII+   +    D A   F+++  +G+  D+V Y 
Sbjct: 234 EHEKANNLIQEMHNXGIEPNAITYSTIISIWGKVGKLDRAAXLFQKLRSSGVEIDQVLYQ 293

Query: 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
            ++  Y ++G V       +R +    +PD I       +   +G  +   +V ++    
Sbjct: 294 TMIVAYERAGLVAHA----KRLLHELKRPDNIPRDTAXHILAGAGRIEEATWVFRQAIDA 349

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
           G   ++ V++ +++   K  K      +FD+M   G  PD   +  ++  YGK      A
Sbjct: 350 GEVKDITVFSRMIDLFSKYKKYANVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKA 409

Query: 382 LELWERMRE 390
             ++  M++
Sbjct: 410 HXVYMNMQD 418



 Score = 62.4 bits (150), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 41/191 (21%), Positives = 88/191 (46%), Gaps = 3/191 (1%)

Query: 355 ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
           Z  L+P+  T + LI  +GK     DAL   + M +++ P D +LY+ L+ +   +    
Sbjct: 2   ZRALSPERYTYSTLITHFGKEGLFDDALSWLQXMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
           +A  +F  +K S    PD  +Y +M+N++G       A  L  EM   GV  + +  + L
Sbjct: 62  KAISIFSRLKRSG-ITPDXVAYNSMINVFGKAKLFKEARSLISEMKTAGVXPDTVSYSTL 120

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN- 533
           +    + ++  + + VF    +     D   C  ++ V    + +++  K+   +++   
Sbjct: 121 LTMYVENQKFLEALSVFAEMREIKCSLDLTTCNIMIDVYGQLDMAKEADKLFWSMRKIGI 180

Query: 534 -PKLVAFLNLI 543
            P ++++  L+
Sbjct: 181 EPNVISYNTLL 191


>gi|356499079|ref|XP_003518371.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Glycine max]
          Length = 615

 Score =  129 bits (323), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 94/340 (27%), Positives = 158/340 (46%), Gaps = 1/340 (0%)

Query: 183 FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
           +P +  F+NV M              + +E+    +    ++++T+I+   +    +E  
Sbjct: 244 YPPKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNTLISGCCKSGDVEEGF 303

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
                M   G+ PD  T+SA+++   K G+++E   L++     G  P+ + F+ L    
Sbjct: 304 RLKGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRGLVPNGVTFTTLIDGQ 363

Query: 303 GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
            + G  D      Q M + GV+P+LV YN L+  + K G    AR L +EM  SGL PD+
Sbjct: 364 CKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMTASGLKPDK 423

Query: 363 KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED 422
            T T LI    K    + ALE+  RM E    +D + +  L++     G V +A R+  D
Sbjct: 424 ITFTTLIDGCCKDGDMESALEIKRRMVEEGIELDDVAFTALISGLCREGRVHDAGRMLTD 483

Query: 423 MKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKAR 482
           M LS   KPD+ +YT +++ +   G+V    +L +EM   G    V+    L+  L K  
Sbjct: 484 M-LSAGFKPDDPTYTMVIDCFCKKGDVKMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQG 542

Query: 483 RIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDV 522
           ++ +   +    ++ GV P+D     LL   S   +S DV
Sbjct: 543 QMKNAKMLLDAMLNVGVAPNDITYNILLDGHSKHGSSVDV 582



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 124/253 (49%), Gaps = 1/253 (0%)

Query: 251 TGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDG 310
           +G  P    ++ ++  + K+G V     +++     G +P  ++F+ L     +SGD + 
Sbjct: 242 SGYPPKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNTLISGCCKSGDVEE 301

Query: 311 IRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK 370
              +   M+S GV P++  ++ L+  + K G+      LFDEM   GL P+  T T LI 
Sbjct: 302 GFRLKGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRGLVPNGVTFTTLID 361

Query: 371 IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCK 430
              K      AL+ ++ M       D + YN L+N    +G ++EA RL  +M  S   K
Sbjct: 362 GQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMTASGL-K 420

Query: 431 PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRV 490
           PD  ++T +++     G++++A+E+   M E G+ ++ +  T LI  L +  R+ D  R+
Sbjct: 421 PDKITFTTLIDGCCKDGDMESALEIKRRMVEEGIELDDVAFTALISGLCREGRVHDAGRM 480

Query: 491 FGVSIDRGVKPDD 503
               +  G KPDD
Sbjct: 481 LTDMLSAGFKPDD 493



 Score = 47.8 bits (112), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 87/190 (45%), Gaps = 11/190 (5%)

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAER---LFEDM 423
           ALI  Y  + +  DA++ +  + +NK+P+       LL     +  V E ER   L+ ++
Sbjct: 181 ALISAYVDSGFTPDAVQCFRLVTKNKFPVPIRGCENLLRRVVRLRPV-EIERSWALYLEV 239

Query: 424 KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483
             S Y  P  Y +  +++ +   G+V NA  +F+E+ + G+   V+    LI    K+  
Sbjct: 240 LDSGY-PPKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNTLISGCCKSGD 298

Query: 484 IDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLC-ETSEDVGKVI---TCLQQANPKLVAF 539
           +++  R+ GV    GV PD      L++   LC E   D G ++    C +   P  V F
Sbjct: 299 VEEGFRLKGVMESEGVCPDVFTFSALIN--GLCKEGRLDEGSLLFDEMCGRGLVPNGVTF 356

Query: 540 LNLIEDNSTG 549
             LI+    G
Sbjct: 357 TTLIDGQCKG 366


>gi|255661188|gb|ACU25763.1| pentatricopeptide repeat-containing protein [Aloysia virgata]
          Length = 426

 Score =  129 bits (323), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 88/290 (30%), Positives = 148/290 (51%), Gaps = 1/290 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D  TYST+IT   +  LFD A+ W ++M +  +  D V YS ++++  K     + +S++
Sbjct: 8   DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
            R   SG+ PD +A++ +  +FG++  +   R ++ EM++ GV PN   Y+TLL    + 
Sbjct: 68  SRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTMYVEN 127

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
            K   A S+F EM E     D  T   +I +YG+   AK+A +L+  MR+     + + Y
Sbjct: 128 KKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSY 187

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           NTLL +  D  L  EA  LF  M+  +  + +  +Y +M+ IYG     + A  L +EM 
Sbjct: 188 NTLLRVYGDAELFGEAIHLFRLMQRKNIVQ-NVVTYNSMMMIYGKTLEHEKANNLIQEMQ 246

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
             G+  N +  + +I   GK  ++D    +F      GV+ D  L   ++
Sbjct: 247 NRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMI 296



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 162/345 (46%), Gaps = 6/345 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K     P + + YN  +      + F+    L +EM +  +  +  +YS
Sbjct: 60  YSKAISIFSRLKRSGFTP-DLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYS 118

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY + G  +E   L+      
Sbjct: 119 TLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 178

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   +  N+V YN+++   GK  +   A
Sbjct: 179 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEKA 238

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R +   +D +LY T++  
Sbjct: 239 NNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVA 298

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K      PDN      ++I    G ++ A  +F +  + G   
Sbjct: 299 YERAGLVAHAKRLLHELK-----SPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVK 353

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
           ++     +I    K ++  +L+ VF      G  PD  +   +L+
Sbjct: 354 DITVFERMIHLFSKYKKYANLIEVFDKMRGLGYFPDSNVIALVLN 398



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 138/271 (50%), Gaps = 1/271 (0%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
            +M  + +  D + YS +I  +++   + +AI  F R+ ++G  PD V Y+A+++V+ K+
Sbjct: 33  QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKA 92

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
               E  SL      +G  P+  ++S L  M+ E+  +     V  EM+ +    +L   
Sbjct: 93  KLFREARSLISEMRTAGVMPNTASYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTC 152

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
           N +++  G+ G    A  LF  M + G+ P+  +   L+++YG A    +A+ L+  M+ 
Sbjct: 153 NIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR 212

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
                + + YN+++ +       E+A  L ++M+ +   +P++ +Y+ +++I+G  G +D
Sbjct: 213 KNIVQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ-NRGIEPNSITYSTIISIWGKVGKLD 271

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
            A  LF+++   GV I+ +    +I    +A
Sbjct: 272 RAAMLFQKLRSSGVEIDQVLYQTMIVAYERA 302



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 125/263 (47%), Gaps = 1/263 (0%)

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
           +  L PD  TYS ++  + K G  +  LS  ++        D + +S L ++  +  DY 
Sbjct: 2   QRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               +   +K  G  P+LV YN ++   GKA     ARSL  EM  +G+ P+  + + L+
Sbjct: 62  KAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLL 121

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
            +Y + +   +AL ++  MRE K  +D    N ++++   +G+ +EA++LF  M+     
Sbjct: 122 TMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG-I 180

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
           +P+  SY  +L +YG       AI LF  M    +  NV+    ++   GK    +    
Sbjct: 181 EPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 490 VFGVSIDRGVKPDDRLCGCLLSV 512
           +     +RG++P+      ++S+
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISI 263



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 121/246 (49%), Gaps = 5/246 (2%)

Query: 218 IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL 277
           IE + ++Y+T++       LF EAI  F  M +  ++ + VTY++++ +Y K+ + E+  
Sbjct: 180 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEKAN 239

Query: 278 SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
           +L +     G +P+ I +S +  ++G+ G  D    + Q+++S GV+ + V+Y T++ A 
Sbjct: 240 NLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAY 299

Query: 338 GKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDF 397
            +AG    A+ L  E+     +PD       I I   A   ++A  ++ +  +     D 
Sbjct: 300 ERAGLVAHAKRLLHELK----SPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDI 355

Query: 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE 457
            ++  ++++ +          +F+ M+   Y  PD+     +LN YG     D A  ++ 
Sbjct: 356 TVFERMIHLFSKYKKYANLIEVFDKMRGLGYF-PDSNVIALVLNAYGKLHEFDKANGVYM 414

Query: 458 EMSELG 463
           EM E+G
Sbjct: 415 EMQEVG 420



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 96/244 (39%), Gaps = 36/244 (14%)

Query: 290 PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSL 349
           PD   +S L   FG+ G +D     LQ+M+   V  +LV+Y+ L+E   K      A S+
Sbjct: 7   PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66

Query: 350 FDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCAD 409
           F  +  SG TP                                   D + YN ++N+   
Sbjct: 67  FSRLKRSGFTP-----------------------------------DLVAYNAMINVFGK 91

Query: 410 IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVM 469
             L  EA  L  +M+ +    P+  SY+ +L +Y        A+ +F EM E+   +++ 
Sbjct: 92  AKLFREARSLISEMRTAG-VMPNTASYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLT 150

Query: 470 GCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCL 529
            C  +I   G+     +  ++F      G++P+      LL V    E   +   +   +
Sbjct: 151 TCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLM 210

Query: 530 QQAN 533
           Q+ N
Sbjct: 211 QRKN 214



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/242 (21%), Positives = 101/242 (41%), Gaps = 5/242 (2%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           P+  +    L +    + + ++   F  ++ +N+     + YN  M       + +    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQ-NVVTYNSMMMIYGKTLEHEKANN 240

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  EM +  IE ++ITYSTII+   +    D A   F+++  +G+  D+V Y  ++  Y 
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYE 300

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           ++G V       +R +     PD I       +   +G  +   YV ++    G   ++ 
Sbjct: 301 RAGLVAHA----KRLLHELKSPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDIT 356

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
           V+  ++    K  K      +FD+M   G  PD   +  ++  YGK      A  ++  M
Sbjct: 357 VFERMIHLFSKYKKYANLIEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANGVYMEM 416

Query: 389 RE 390
           +E
Sbjct: 417 QE 418



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 87/191 (45%), Gaps = 3/191 (1%)

Query: 355 ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
           +  L+PD  T + LI  +GK      AL   ++M +++ P D +LY+ L+ +   +    
Sbjct: 2   QRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
           +A  +F  +K S +  PD  +Y AM+N++G       A  L  EM   GV  N    + L
Sbjct: 62  KAISIFSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTL 120

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN- 533
           +    + ++  + + VF    +     D   C  ++ V      +++  K+   +++   
Sbjct: 121 LTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180

Query: 534 -PKLVAFLNLI 543
            P +V++  L+
Sbjct: 181 EPNVVSYNTLL 191


>gi|115472657|ref|NP_001059927.1| Os07g0548300 [Oryza sativa Japonica Group]
 gi|28564790|dbj|BAC57720.1| putative crp1 protein [Oryza sativa Japonica Group]
 gi|113611463|dbj|BAF21841.1| Os07g0548300 [Oryza sativa Japonica Group]
          Length = 661

 Score =  129 bits (323), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 97/345 (28%), Positives = 154/345 (44%), Gaps = 37/345 (10%)

Query: 194 MKSLRFGRQFQLIEQLANEM-VSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTG 252
           + SL   R+    E L  E  ++ EI+     Y+ ++    +      A +  + M + G
Sbjct: 263 ISSLGSARRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCG 322

Query: 253 LMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIR 312
           + PDE TYS ++D Y ++G+ E    L +   A G KP    FS +   F + G++    
Sbjct: 323 VAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAF 382

Query: 313 YVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIY 372
            VL+EM + GV+P+   YN +++  GK    G A   FD M E G+ PD  T   LI  +
Sbjct: 383 AVLREMHASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAH 442

Query: 373 GKARWAKDALELWERMRENKWPMDFILYNTLLN-------------MCADI---GLV--- 413
            K      A+EL++ MRE+  P+    YN ++N             M A++   GLV   
Sbjct: 443 CKGGRHDRAIELFDEMRESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNI 502

Query: 414 ----------------EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE 457
                           +EA    E MK +D  KP    Y A++N Y   G  D+A+ + +
Sbjct: 503 ITYTTLVDVYGRSGRFKEAVDCIEAMK-ADGLKPSPTMYHALVNAYAQRGLADHALNVVK 561

Query: 458 EMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            M   G+  + +    LI   G+ RRI +   V     + G++PD
Sbjct: 562 AMRADGLEASTVVLNSLINAFGEDRRIAEAFSVLQFMKENGLRPD 606



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/299 (23%), Positives = 141/299 (47%), Gaps = 2/299 (0%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           W+ +      +++  + P   +F  + +   R   ++Q    +  EM ++ +  D   Y+
Sbjct: 343 WESARILLKEMEADGVKPSSYVFSRI-LAGFRDRGEWQKAFAVLREMHASGVRPDRHFYN 401

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
            +I    + N    A++ F+RM + G+ PD VT++ ++D + K G+ +  + L++    S
Sbjct: 402 VMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEMRES 461

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
                   ++++  + GE   ++G+  +L EMK  G+ PN++ Y TL++  G++G+   A
Sbjct: 462 NCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEA 521

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
               + M   GL P      AL+  Y +   A  AL + + MR +      ++ N+L+N 
Sbjct: 522 VDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNSLINA 581

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
             +   + EA  + + MK  +  +PD  +YT ++         +    ++EEM   G A
Sbjct: 582 FGEDRRIAEAFSVLQFMK-ENGLRPDVITYTTLMKALIRVEQFEKVPVIYEEMITSGCA 639



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 98/196 (50%), Gaps = 1/196 (0%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F+ ++  N  P+ T  YN+ +  L   ++++ +E +  EM    +  + ITY+T++   
Sbjct: 454 LFDEMRESNC-PLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVY 512

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            R   F EA++  E M   GL P    Y A+++ YA+ G  +  L++ +   A G +   
Sbjct: 513 GRSGRFKEAVDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLEAST 572

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           +  + L   FGE         VLQ MK  G++P+++ Y TL++A+ +  +      +++E
Sbjct: 573 VVLNSLINAFGEDRRIAEAFSVLQFMKENGLRPDVITYTTLMKALIRVEQFEKVPVIYEE 632

Query: 353 MVESGLTPDEKTLTAL 368
           M+ SG  PD K    L
Sbjct: 633 MITSGCAPDRKARAML 648



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 79/180 (43%), Gaps = 3/180 (1%)

Query: 325 PNLVVYNTLLEAMGKAGKP---GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
           P+L  Y+ LL ++     P    L   L  ++ ES L PD    + LI  + +AR    A
Sbjct: 181 PDLASYSHLLASLLNTRDPPDAALLDRLLGDLRESRLEPDAPLFSDLISAFARARLPDAA 240

Query: 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
           LEL    +             L++       V EAE LF +  L+   KP   +Y A+L 
Sbjct: 241 LELLASAQAIGLTPRSNAVTALISSLGSARRVAEAEALFLEFFLAGEIKPRTRAYNALLK 300

Query: 442 IYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
            Y   G++ NA ++ +EMS+ GVA +    + L+    +A R +    +       GVKP
Sbjct: 301 GYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKP 360



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 69/152 (45%), Gaps = 20/152 (13%)

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382
           ++P+  +++ L+ A  +A  P  A  L       GLTP    +TALI   G AR   +A 
Sbjct: 217 LEPDAPLFSDLISAFARARLPDAALELLASAQAIGLTPRSNAVTALISSLGSARRVAEAE 276

Query: 383 ELWERMRENKWPMDFIL----------YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPD 432
            L+         ++F L          YN LL     IG ++ AE++ ++M       PD
Sbjct: 277 ALF---------LEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCG-VAPD 326

Query: 433 NYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
             +Y+ +++ Y   G  ++A  L +EM   GV
Sbjct: 327 EATYSLLVDAYTRAGRWESARILLKEMEADGV 358


>gi|255661168|gb|ACU25753.1| pentatricopeptide repeat-containing protein [Glandularia incisa]
          Length = 352

 Score =  129 bits (323), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 88/283 (31%), Positives = 146/283 (51%), Gaps = 7/283 (2%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D  TYST+IT   +  LFD A+ W ++M +  +  D V YS ++++  K     + +S++
Sbjct: 8   DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
            R   SG+ PD +A++ +  +FG++  +   R ++ EM++ GV PN   Y+TLL    + 
Sbjct: 68  SRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTTSYSTLLTMYVEN 127

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
            K   A S+F EM E     D  T   +I +YG+   AK+A +L+  MR+     + + Y
Sbjct: 128 KKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSY 187

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           NTLL +  D  L  EA  LF  M+  +  + +  +Y +M+ IYG     + A  L +EM 
Sbjct: 188 NTLLRVYGDAELFGEAIHLFRLMQRKN-IEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 246

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVF------GVSIDR 497
             G+  N +  + +I   GK  ++D    +F      GV ID+
Sbjct: 247 NRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQ 289



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 138/271 (50%), Gaps = 1/271 (0%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
            +M  + +  D + YS +I  +++   + +AI  F R+ ++G  PD V Y+A+++V+ K+
Sbjct: 33  QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKA 92

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
               E  SL      +G  P+  ++S L  M+ E+  +     V  EM+ +    +L   
Sbjct: 93  KLFREARSLISEMRTAGVTPNTTSYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTC 152

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
           N +++  G+ G    A  LF  M + G+ P+  +   L+++YG A    +A+ L+  M+ 
Sbjct: 153 NIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR 212

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
                + + YN+++ +       E+A  L ++M+ +   +P++ +Y+ +++I+G  G +D
Sbjct: 213 KNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ-NRGIEPNSITYSTIISIWGKVGKLD 271

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
            A  LF+++   GV I+ +    +I    +A
Sbjct: 272 RAAMLFQKLRSSGVDIDQVLYQTMIVAYERA 302



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 145/297 (48%), Gaps = 6/297 (2%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K     P + + YN  +      + F+    L +EM +  +  +  +YS
Sbjct: 60  YSKAISIFSRLKRSGFTP-DLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTTSYS 118

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY + G  +E   L+      
Sbjct: 119 TLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 178

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   ++ N+V YN+++   GK  +   A
Sbjct: 179 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKA 238

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R +   +D +LY T++  
Sbjct: 239 NNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVA 298

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
               GLV  A+RL  ++K     +PDN      ++I    G ++ A  +F +  + G
Sbjct: 299 YERAGLVAHAKRLLHELK-----RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAG 350



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 125/261 (47%), Gaps = 1/261 (0%)

Query: 252 GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGI 311
            L PD  TYS ++  + K G  +  LS  ++        D + +S L ++  +  DY   
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 312 RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371
             +   +K  G  P+LV YN ++   GKA     ARSL  EM  +G+TP+  + + L+ +
Sbjct: 64  ISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTTSYSTLLTM 123

Query: 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
           Y + +   +AL ++  MRE K  +D    N ++++   +G+ +EA++LF  M+     +P
Sbjct: 124 YVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG-IEP 182

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           +  SY  +L +YG       AI LF  M    +  NV+    ++   GK    +    + 
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 242

Query: 492 GVSIDRGVKPDDRLCGCLLSV 512
               +RG++P+      ++S+
Sbjct: 243 QEMQNRGIEPNSITYSTIISI 263



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 87/191 (45%), Gaps = 3/191 (1%)

Query: 355 ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
           E  L+PD  T + LI  +GK      AL   ++M +++ P D +LY+ L+ +   +    
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
           +A  +F  +K S +  PD  +Y AM+N++G       A  L  EM   GV  N    + L
Sbjct: 62  KAISIFSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTTSYSTL 120

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN- 533
           +    + ++  + + VF    +     D   C  ++ V      +++  K+   +++   
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180

Query: 534 -PKLVAFLNLI 543
            P +V++  L+
Sbjct: 181 EPNVVSYNTLL 191


>gi|414887034|tpg|DAA63048.1| TPA: crs2 associated factor1 [Zea mays]
          Length = 617

 Score =  129 bits (323), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 87/317 (27%), Positives = 146/317 (46%), Gaps = 20/317 (6%)

Query: 214 VSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKV 273
           ++ EI+     Y+ ++    R      A +  + M + G+ PDE TYS ++D Y ++G+ 
Sbjct: 291 LAGEIKPRTRAYNALLKGYVRIASLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRW 350

Query: 274 EEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTL 333
           E    L +   A G KP    FS +   F + GD+     VL+EM++ GV+P+   YN +
Sbjct: 351 ESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVM 410

Query: 334 LEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKW 393
           ++  GK    G A   F++M E G+ PD  T   LI  + K      A EL+E MRE+  
Sbjct: 411 IDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAAELFEEMRESNC 470

Query: 394 PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAI 453
           P     YN ++N+  +    E  E +  +MK      P+  +YT ++++YG  G    AI
Sbjct: 471 PPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLV-PNIITYTTLVDVYGRSGRYKEAI 529

Query: 454 ELFEEM-------------------SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVS 494
           +  E M                   ++ G+  +V+  T L++ L +  + D +  ++   
Sbjct: 530 DCIEAMKADGLKPSPTMYHALVNAYAQRGLRPDVITYTTLMKALIRVEQFDKVPVIYEEM 589

Query: 495 IDRGVKPDDRLCGCLLS 511
           I  G  PD +    L S
Sbjct: 590 ITSGCAPDRKARAMLRS 606



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 86/362 (23%), Positives = 158/362 (43%), Gaps = 37/362 (10%)

Query: 205 LIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAIL 264
           L+E+L  ++  + +E D   +S +I+   R  L D A+E        GL P     +A++
Sbjct: 211 LLERLLGDLRESRLEPDAPLFSDLISAFARAALPDAALELLASAQAIGLTPRSNAVTALI 270

Query: 265 DVYAKSGKVEEVLSLY-------------------ERG---VAS--------------GW 288
                +G+V E  +L+                    +G   +AS              G 
Sbjct: 271 SALGTAGRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVRIASLKNAEQVLDEMSQCGV 330

Query: 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348
            PD   +S+L   +  +G ++  R +L+EM++ GV+P+  V++ +L      G    A +
Sbjct: 331 APDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFA 390

Query: 349 LFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCA 408
           +  EM  SG+ PD      +I  +GK      A++ + +MRE     D + +NTL++   
Sbjct: 391 VLREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAHC 450

Query: 409 DIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINV 468
             G  + A  LFE+M+ S+ C P   +Y  M+N+ G   + +    +  EM E G+  N+
Sbjct: 451 KGGRHDRAAELFEEMRESN-CPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNI 509

Query: 469 MGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITC 528
           +  T L+   G++ R  + +         G+KP   +   L++  +      DV    T 
Sbjct: 510 ITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLRPDVITYTTL 569

Query: 529 LQ 530
           ++
Sbjct: 570 MK 571



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 102/235 (43%), Gaps = 56/235 (23%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLA--NEMVSNEIELDNIT 224
           WQK++     +++  + P +  FYNV + +  FG+   L   +   N+M    IE D +T
Sbjct: 385 WQKAFAVLREMQASGVRP-DRHFYNVMIDT--FGKYNCLGHAMDAFNKMREEGIEPDVVT 441

Query: 225 YSTIITCAKRCNLFDEAIEWFERMYKT--------------------------------- 251
           ++T+I    +    D A E FE M ++                                 
Sbjct: 442 WNTLIDAHCKGGRHDRAAELFEEMRESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMK 501

Query: 252 --GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
             GL+P+ +TY+ ++DVY +SG+ +E +   E   A G KP P  +  L   + +     
Sbjct: 502 EQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQR---- 557

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
                       G++P+++ Y TL++A+ +  +      +++EM+ SG  PD K 
Sbjct: 558 ------------GLRPDVITYTTLMKALIRVEQFDKVPVIYEEMITSGCAPDRKA 600



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 78/180 (43%), Gaps = 3/180 (1%)

Query: 325 PNLVVYNTLLEAMGKAGKP---GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
           P+L  Y+ LL ++     P    L   L  ++ ES L PD    + LI  + +A     A
Sbjct: 188 PDLASYSHLLASLLNTRDPPDAALLERLLGDLRESRLEPDAPLFSDLISAFARAALPDAA 247

Query: 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
           LEL    +             L++     G V EAE LF +  L+   KP   +Y A+L 
Sbjct: 248 LELLASAQAIGLTPRSNAVTALISALGTAGRVAEAEALFLEFFLAGEIKPRTRAYNALLK 307

Query: 442 IYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
            Y    ++ NA ++ +EMS+ GVA +    + L+    +A R +    +       GVKP
Sbjct: 308 GYVRIASLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKP 367


>gi|224126843|ref|XP_002319940.1| predicted protein [Populus trichocarpa]
 gi|222858316|gb|EEE95863.1| predicted protein [Populus trichocarpa]
          Length = 555

 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 101/350 (28%), Positives = 165/350 (47%), Gaps = 43/350 (12%)

Query: 190 YNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERM 248
           Y++ +K L R G+  ++I+ L +  V    E D + Y+TI+    +  L +EA+  F +M
Sbjct: 199 YSIIIKGLCRVGKTTEVIKLLEHMKVVG-CEPDVVIYNTIVDRLCKDRLVNEAVHIFCKM 257

Query: 249 YKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY 308
             TG++P  VTY++++      G+ +E   L          PD +AFSVL  +  + G+ 
Sbjct: 258 KGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSVLIDIMCKEGEV 317

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLL----------------EAMGKAGK-PGL------ 345
              R +L+ M  +GV+P++  YNTL+                E M   G+ P +      
Sbjct: 318 SEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKVFEVMISKGRMPDVFSFSIL 377

Query: 346 ------------ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKW 393
                       A+ LFDEM   GL PD  +   LI    +AR   +A EL++ M  N +
Sbjct: 378 VNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQARRPLEAEELFKDMHSNGY 437

Query: 394 PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAI 453
           P + + Y+ LL+  +  G +++A  LF  M+ S   KPD  +Y  M++     G   +A 
Sbjct: 438 PPNLVTYSILLDCLSKQGYLDQAMGLFRAMENSGL-KPDLVTYNIMIDGMCKYGKFKDAR 496

Query: 454 ELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
           ELF E+S  G+  N   CT  I  + K   +D+  + F     R ++ DD
Sbjct: 497 ELFAELSVKGLQPNNWVCTPTIDGVCKGGLLDEAHKAF-----RQMEKDD 541



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 86/330 (26%), Positives = 161/330 (48%), Gaps = 4/330 (1%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           FN + + N  P    F  +    +R  + ++ +  L+ +M    I  D ++ + +I C  
Sbjct: 79  FNHMVNTNPLPSIVKFGELFSALVRM-KHYKTVVSLSKQMEMAGISHDVLSLTILINCFC 137

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
           R    D       ++ K GL P+ +T+S +++ +   GK+   + L++  VA G+KP+  
Sbjct: 138 RLCHVDYGFSVLGKIIKLGLEPNVITFSTLINGFCIEGKIGRAIELFDVMVARGYKPNVH 197

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
           ++S++ K     G    +  +L+ MK +G +P++V+YNT+++ + K      A  +F +M
Sbjct: 198 SYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKDRLVNEAVHIFCKM 257

Query: 354 VESGLTPDEKTLTALIK-IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
             +G+ P   T T+LI  +    RW K+A  L   M+      D + ++ L+++    G 
Sbjct: 258 KGTGILPTVVTYTSLIHGLRNLGRW-KEAFGLLNEMKGGNIMPDLVAFSVLIDIMCKEGE 316

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
           V EA  + + M      +PD  +Y  ++N Y     V  A ++FE M   G   +V   +
Sbjct: 317 VSEARVILKTMTEMGV-EPDVATYNTLMNGYCLRMEVVEARKVFEVMISKGRMPDVFSFS 375

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            L+    KA+RID+  ++F     RG+ PD
Sbjct: 376 ILVNGYCKAKRIDEAKQLFDEMTHRGLIPD 405



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 82/163 (50%), Gaps = 4/163 (2%)

Query: 207 EQLANEMVSNEIELDNITYSTIIT--CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAIL 264
           +QL +EM    +  D ++Y+T+I+  C  R  L  EA E F+ M+  G  P+ VTYS +L
Sbjct: 391 KQLFDEMTHRGLIPDTVSYNTLISGLCQARRPL--EAEELFKDMHSNGYPPNLVTYSILL 448

Query: 265 DVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQ 324
           D  +K G +++ + L+     SG KPD + ++++     + G +   R +  E+   G+Q
Sbjct: 449 DCLSKQGYLDQAMGLFRAMENSGLKPDLVTYNIMIDGMCKYGKFKDARELFAELSVKGLQ 508

Query: 325 PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
           PN  V    ++ + K G    A   F +M +   +P +  +  
Sbjct: 509 PNNWVCTPTIDGVCKGGLLDEAHKAFRQMEKDDCSPAQGCING 551



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 1/119 (0%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F+ +  + L P +T+ YN  +  L   R+    E+L  +M SN    + +TYS ++ C 
Sbjct: 393 LFDEMTHRGLIP-DTVSYNTLISGLCQARRPLEAEELFKDMHSNGYPPNLVTYSILLDCL 451

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291
            +    D+A+  F  M  +GL PD VTY+ ++D   K GK ++   L+      G +P+
Sbjct: 452 SKQGYLDQAMGLFRAMENSGLKPDLVTYNIMIDGMCKYGKFKDARELFAELSVKGLQPN 510


>gi|449463623|ref|XP_004149531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g59040-like [Cucumis sativus]
          Length = 580

 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 92/372 (24%), Positives = 173/372 (46%), Gaps = 10/372 (2%)

Query: 158 LLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNE 217
           L+    LK W        W+++Q+ +    + + + + +      F   E++ N M    
Sbjct: 109 LVRFKQLKKWNLVSEILEWLRTQSWWNFSEMDFVMLITAYGKLGDFNRAEKVLNLMNKKG 168

Query: 218 IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL 277
              + ++++ ++    R   ++ A   F RM   G  P  +TY  +L  + +  K +E  
Sbjct: 169 YAPNVVSHTALMEAYGRGRRYNNAEAIFRRMQSGGPEPSALTYQIMLKTFVEGSKFKEAE 228

Query: 278 SLYERGVASG---WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLL 334
            L++  +       KPD   F ++  MF ++G+Y+  R V  EM + GV    V YN+L+
Sbjct: 229 ELFDSLLNKEKPVLKPDQKMFHMIIYMFKKAGNYEKARKVFAEMAARGVPQTTVTYNSLM 288

Query: 335 EAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWP 394
                  +      ++D+M  +GL PD  +   LI  YGKAR  ++AL ++E M +    
Sbjct: 289 SFETNYKE---VSKIYDQMQRAGLQPDVVSYALLISAYGKARREEEALAVFEEMLDAGIR 345

Query: 395 MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIE 454
                YN LL+  A  G+VE+A+ +F+ MK  D C PD  SYT ML+ Y +  +++ A  
Sbjct: 346 PTHKAYNILLDAFAISGMVEQAKIVFKSMK-RDRCSPDICSYTTMLSAYVNASDMEGAEN 404

Query: 455 LFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVS 514
            F  + + G   NV+    LI+   K   ++ +++ +      G++ +  +   L +++ 
Sbjct: 405 FFRRLKQDGFRPNVVTYGTLIKGYAKINNLEKMIKRYEEMKVNGIRVNQTI---LTTIMD 461

Query: 515 LCETSEDVGKVI 526
               ++D G  +
Sbjct: 462 AYGKNKDFGSAV 473



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/308 (22%), Positives = 150/308 (48%), Gaps = 7/308 (2%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNE---IELDNITYSTIITCAKRCNLFDEAIEWFE 246
           Y + +K+   G +F+  E+L + +++ E   ++ D   +  II   K+   +++A + F 
Sbjct: 211 YQIMLKTFVEGSKFKEAEELFDSLLNKEKPVLKPDQKMFHMIIYMFKKAGNYEKARKVFA 270

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
            M   G+    VTY++++         +EV  +Y++   +G +PD +++++L   +G++ 
Sbjct: 271 EMAARGVPQTTVTYNSLMSF---ETNYKEVSKIYDQMQRAGLQPDVVSYALLISAYGKAR 327

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
             +    V +EM   G++P    YN LL+A   +G    A+ +F  M     +PD  + T
Sbjct: 328 REEEALAVFEEMLDAGIRPTHKAYNILLDAFAISGMVEQAKIVFKSMKRDRCSPDICSYT 387

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
            ++  Y  A   + A   + R++++ +  + + Y TL+   A I  +E+  + +E+MK++
Sbjct: 388 TMLSAYVNASDMEGAENFFRRLKQDGFRPNVVTYGTLIKGYAKINNLEKMIKRYEEMKVN 447

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
              + +    T +++ YG   +  +A+  F E+   G+  +      L+     A  +D+
Sbjct: 448 G-IRVNQTILTTIMDAYGKNKDFGSAVIWFNEIESCGLRPDQKAKNILLSLAKTAEELDE 506

Query: 487 LVRVFGVS 494
             ++ G S
Sbjct: 507 ANQLVGYS 514



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/285 (22%), Positives = 133/285 (46%), Gaps = 11/285 (3%)

Query: 286 SGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGL 345
           S W    + F +L   +G+ GD++    VL  M   G  PN+V +  L+EA G+  +   
Sbjct: 132 SWWNFSEMDFVMLITAYGKLGDFNRAEKVLNLMNKKGYAPNVVSHTALMEAYGRGRRYNN 191

Query: 346 ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPM---DFILYNT 402
           A ++F  M   G  P   T   ++K + +    K+A EL++ +   + P+   D  +++ 
Sbjct: 192 AEAIFRRMQSGGPEPSALTYQIMLKTFVEGSKFKEAEELFDSLLNKEKPVLKPDQKMFHM 251

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
           ++ M    G  E+A ++F +M      +    +Y ++++      N     +++++M   
Sbjct: 252 IIYMFKKAGNYEKARKVFAEMAARGVPQ-TTVTYNSLMSF---ETNYKEVSKIYDQMQRA 307

Query: 463 GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDV 522
           G+  +V+    LI   GKARR ++ + VF   +D G++P  +    LL   ++    E  
Sbjct: 308 GLQPDVVSYALLISAYGKARREEEALAVFEEMLDAGIRPTHKAYNILLDAFAISGMVEQA 367

Query: 523 GKVITCLQ--QANPKLVAFLNLIED--NSTGFENIKEEFRNVIKD 563
             V   ++  + +P + ++  ++    N++  E  +  FR + +D
Sbjct: 368 KIVFKSMKRDRCSPDICSYTTMLSAYVNASDMEGAENFFRRLKQD 412


>gi|357111070|ref|XP_003557338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Brachypodium distachyon]
          Length = 878

 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 82/341 (24%), Positives = 170/341 (49%), Gaps = 4/341 (1%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN+ +  L    +     ++ +EM    +  + ++ + ++    + N  +EA   FE   
Sbjct: 388 YNIIIDMLCMAGRVNEAYKIRDEMELAGLFPNLLSVNIMVDRLCKANQLEEAHRIFESAS 447

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
           + G  P+ VTY +++D   K GK+++   L+E+ + +G   +PI ++ L + F   G  +
Sbjct: 448 ERGCNPNSVTYCSLIDGLGKKGKIDDAYRLFEKMLDAGHDANPIIYTSLIRNFFMHGRKE 507

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               + +EM   G +P+L + NT ++ + KAG+    R++F++M   G  PD ++ + LI
Sbjct: 508 DGHKIYKEMIRRGGRPDLTLLNTYMDCVFKAGEVEKGRAIFEDMKSFGFLPDVRSYSILI 567

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
               KA  A++   +++ M +  + +D   YN +++     G V++A  + E+MK+  + 
Sbjct: 568 HGLTKAGQARETSNIFQAMSQQGFALDARAYNAVVDGLCKSGKVDKAYEVLEEMKVK-HV 626

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
            P   +Y ++++       +D A  LFEE    G+ +NV+  + LI   GK  RID+   
Sbjct: 627 HPTVATYGSIVDGLAKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDGFGKVGRIDEAYL 686

Query: 490 VFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQ 530
           +    + +G+ P+      L+  +     +E++ + + C Q
Sbjct: 687 ILEEMMKKGLTPNVYTWNSLMDALV---KTEEIDEALICFQ 724



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 142/313 (45%), Gaps = 2/313 (0%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           +K    F  +KS    P +   Y++ +  L    Q +    +   M      LD   Y+ 
Sbjct: 542 EKGRAIFEDMKSFGFLP-DVRSYSILIHGLTKAGQARETSNIFQAMSQQGFALDARAYNA 600

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           ++    +    D+A E  E M    + P   TY +I+D  AK  +++E   L+E   + G
Sbjct: 601 VVDGLCKSGKVDKAYEVLEEMKVKHVHPTVATYGSIVDGLAKIDRLDEAYMLFEEAKSKG 660

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
            + + I +S L   FG+ G  D    +L+EM   G+ PN+  +N+L++A+ K  +   A 
Sbjct: 661 IELNVILYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKTEEIDEAL 720

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
             F  M E   +P+  T + LI    + +    A   W+ M++     + + Y T+++  
Sbjct: 721 ICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLIPNVVTYTTMISGL 780

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
           A +G + +A  LFE  K ++   PD+ S+ A++    +      A ++FEE    G  +N
Sbjct: 781 AKVGNITDAYSLFERFK-TNGGIPDSASFNALIEGMSNANRPMEAYQVFEETRLRGCRLN 839

Query: 468 VMGCTCLIQCLGK 480
           V  C  L+  L K
Sbjct: 840 VKTCISLLDALNK 852



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 142/301 (47%), Gaps = 11/301 (3%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
            Y+ +I         + A+E   +M   G       ++ ++   A+ G++E  L+L +  
Sbjct: 178 AYTVLIGALAEARQPERALELLRQMQDVGYEVSVPLFTTLVRALAREGQMEPALALVDEV 237

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
             S  +PD + ++V    FG++G  D       E+K+ G++P+ V Y +++  + KAG+ 
Sbjct: 238 KGSCLEPDIVLYNVCIDCFGKAGSVDMAWKFFHELKAHGLRPDDVSYTSMVWVLCKAGRL 297

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
           G A  LF +M      P       +I  YG A    DA +L ER+RE       + +N++
Sbjct: 298 GEAEELFGQMEAERDVPCAYAYNTMIMGYGSAERFDDAYKLLERLRERGCIPSVVSFNSI 357

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           L        V+EA  LF+ MK     KP+  +Y  ++++    G V+ A ++ +EM   G
Sbjct: 358 LTCLGKKRKVDEALTLFDVMKKD--AKPNISTYNIIIDMLCMAGRVNEAYKIRDEMELAG 415

Query: 464 VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVG 523
           +  N++    ++  L KA ++++  R+F  + +RG  P+          V+ C   + +G
Sbjct: 416 LFPNLLSVNIMVDRLCKANQLEEAHRIFESASERGCNPNS---------VTYCSLIDGLG 466

Query: 524 K 524
           K
Sbjct: 467 K 467



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 141/294 (47%), Gaps = 6/294 (2%)

Query: 198 RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDE 257
           RF   ++L+E+L        +    +++++I+TC  +    DEA+  F+ M K    P+ 
Sbjct: 331 RFDDAYKLLERLRERGCIPSV----VSFNSILTCLGKKRKVDEALTLFDVMKKDA-KPNI 385

Query: 258 VTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQE 317
            TY+ I+D+   +G+V E   + +    +G  P+ ++ +++     ++   +    + + 
Sbjct: 386 STYNIIIDMLCMAGRVNEAYKIRDEMELAGLFPNLLSVNIMVDRLCKANQLEEAHRIFES 445

Query: 318 MKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARW 377
               G  PN V Y +L++ +GK GK   A  LF++M+++G   +    T+LI+ +     
Sbjct: 446 ASERGCNPNSVTYCSLIDGLGKKGKIDDAYRLFEKMLDAGHDANPIIYTSLIRNFFMHGR 505

Query: 378 AKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYT 437
            +D  ++++ M       D  L NT ++     G VE+   +FEDMK   +  PD  SY+
Sbjct: 506 KEDGHKIYKEMIRRGGRPDLTLLNTYMDCVFKAGEVEKGRAIFEDMKSFGFL-PDVRSYS 564

Query: 438 AMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
            +++     G       +F+ MS+ G A++      ++  L K+ ++D    V 
Sbjct: 565 ILIHGLTKAGQARETSNIFQAMSQQGFALDARAYNAVVDGLCKSGKVDKAYEVL 618



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 141/312 (45%), Gaps = 11/312 (3%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D  +YS +I    +     E    F+ M + G   D   Y+A++D   KSGKV++   + 
Sbjct: 559 DVRSYSILIHGLTKAGQARETSNIFQAMSQQGFALDARAYNAVVDGLCKSGKVDKAYEVL 618

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
           E        P    +  +     +    D    + +E KS G++ N+++Y++L++  GK 
Sbjct: 619 EEMKVKHVHPTVATYGSIVDGLAKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDGFGKV 678

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G+   A  + +EM++ GLTP+  T  +L+    K     +AL  ++ M+E K   +   Y
Sbjct: 679 GRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKTEEIDEALICFQSMKEMKCSPNTYTY 738

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           + L+N    +    +A   +++M+      P+  +YT M++     GN+ +A  LFE   
Sbjct: 739 SILINGLCRVQKYNKAFVFWQEMQKQGLI-PNVVTYTTMISGLAKVGNITDAYSLFERFK 797

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSE 520
             G   +      LI+ +  A R  +  +VF          + RL GC L+V + C +  
Sbjct: 798 TNGGIPDSASFNALIEGMSNANRPMEAYQVF---------EETRLRGCRLNVKT-CISLL 847

Query: 521 DVGKVITCLQQA 532
           D      CL+QA
Sbjct: 848 DALNKTECLEQA 859



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 81/378 (21%), Positives = 163/378 (43%), Gaps = 37/378 (9%)

Query: 189 FYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERM 248
            +   +++L    Q +    L +E+  + +E D + Y+  I C  +    D A ++F  +
Sbjct: 213 LFTTLVRALAREGQMEPALALVDEVKGSCLEPDIVLYNVCIDCFGKAGSVDMAWKFFHEL 272

Query: 249 YKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY 308
              GL PD+V+Y++++ V  K+G++ E   L+ +  A    P   A++ +   +G +  +
Sbjct: 273 KAHGLRPDDVSYTSMVWVLCKAGRLGEAEELFGQMEAERDVPCAYAYNTMIMGYGSAERF 332

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
           D    +L+ ++  G  P++V +N++L  +GK  K   A +LFD M +    P+  T   +
Sbjct: 333 DDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALTLFDVMKKDA-KPNISTYNII 391

Query: 369 IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428
           I +   A    +A ++ + M       + +  N +++       +EEA R+FE       
Sbjct: 392 IDMLCMAGRVNEAYKIRDEMELAGLFPNLLSVNIMVDRLCKANQLEEAHRIFESAS-ERG 450

Query: 429 CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ------------ 476
           C P++ +Y ++++  G  G +D+A  LFE+M + G   N +  T LI+            
Sbjct: 451 CNPNSVTYCSLIDGLGKKGKIDDAYRLFEKMLDAGHDANPIIYTSLIRNFFMHGRKEDGH 510

Query: 477 -----------------------CLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVV 513
                                  C+ KA  ++    +F      G  PD R    L+  +
Sbjct: 511 KIYKEMIRRGGRPDLTLLNTYMDCVFKAGEVEKGRAIFEDMKSFGFLPDVRSYSILIHGL 570

Query: 514 SLCETSEDVGKVITCLQQ 531
           +    + +   +   + Q
Sbjct: 571 TKAGQARETSNIFQAMSQ 588


>gi|297741630|emb|CBI32762.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 94/333 (28%), Positives = 162/333 (48%), Gaps = 3/333 (0%)

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
           ++L  EM    IE D   Y++II+C  R      A+  F+ M   GL+P   TY A++  
Sbjct: 319 QRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHG 378

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
             K+G++E    L       G   +P+ F+ L   + ESG  D    +   M+  G++ +
Sbjct: 379 VCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESD 438

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
           +  YN++   + K  +   A+ L   MVE G++P+  + T LI IY K     +A  ++ 
Sbjct: 439 VFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFR 498

Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
            M E     + I YN L++  +  G ++EA +L ++++      PD Y+ T++++     
Sbjct: 499 EMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLI-PDVYTCTSLIHGECID 557

Query: 447 GNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLC 506
           G VD A++LF+EM + G+  NV+  T +I  L K  R ++  +++    + G+ PDD + 
Sbjct: 558 GKVDMALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFKLYDEMKETGLTPDDTVY 617

Query: 507 GCLLSVVSLCETSEDVGKVITCLQQANPKLVAF 539
             L  V SL    E +   I   Q    K+  F
Sbjct: 618 SSL--VGSLHSADESISMQIQGSQVKANKVDQF 648



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 141/291 (48%), Gaps = 11/291 (3%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           +++   F+ +  + L P    +  +     + G Q +  + L NEM    I+L+ + ++T
Sbjct: 351 KRALVLFDEMTDKGLIPSAHTYGALIHGVCKAG-QMEAAQMLVNEMQGKGIDLNPVIFNT 409

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           +I       + DEA+     M K GL  D   Y++I     K  + +E   L    V  G
Sbjct: 410 LIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERG 469

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
             P+ ++F+ L  ++ + G++   + V +EM+  G  PN++ YN L++   K G    A 
Sbjct: 470 VSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAH 529

Query: 348 SLFDEMVESGLTPDEKTLTALIK---IYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
            L DE+   GL PD  T T+LI    I GK      AL+L++ M +     + + Y  ++
Sbjct: 530 KLKDELENRGLIPDVYTCTSLIHGECIDGKVDM---ALKLFDEMPQRGLVPNVVTYTAMI 586

Query: 405 NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIEL 455
           +  +  G  EEA +L+++MK +    PD+  Y++++   GS  + D +I +
Sbjct: 587 SGLSKDGRSEEAFKLYDEMKETGL-TPDDTVYSSLV---GSLHSADESISM 633



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 92/392 (23%), Positives = 169/392 (43%), Gaps = 6/392 (1%)

Query: 205 LIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAIL 264
           L++   NE   N  +     +  +        +F EA+E FE M K G   DE +    L
Sbjct: 142 LVDDACNESKCNRAKFKEKFFDLLFRVYADNKMFGEALEAFEHMEKKGFHIDERSCLVYL 201

Query: 265 DVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQ 324
               + G+V+  L  + R V    +    + +++     + GD +  R ++ E+ + GV+
Sbjct: 202 LALRRGGQVDSCLRFFRRMVNLDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVK 261

Query: 325 PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384
            N+V YN  +E   K    G    +   M + G+  +  T T LI  +      ++A  L
Sbjct: 262 ANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRL 321

Query: 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYG 444
           +E MRE     D  +Y ++++     G V+ A  LF++M       P  ++Y A+++   
Sbjct: 322 FEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLI-PSAHTYGALIHGVC 380

Query: 445 SGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR 504
             G ++ A  L  EM   G+ +N +    LI    ++  +D+ +R+  V   +G++ D  
Sbjct: 381 KAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVF 440

Query: 505 LCGCLLS-VVSLCETSEDVGKVITCLQQA-NPKLVAFLNLIED--NSTGFENIKEEFRNV 560
               + S +  L    E  G + + +++  +P  ++F  LI+       F   K  FR +
Sbjct: 441 AYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREM 500

Query: 561 IKDTEVDARRPFCNCLIDICRNRNLNERAHEL 592
            +   V     + N LID    R   + AH+L
Sbjct: 501 EEKGNVPNIITY-NVLIDGYSKRGNMKEAHKL 531



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 72/315 (22%), Positives = 130/315 (41%), Gaps = 5/315 (1%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           + + V   +  FG   +  E     M      +D  +    +   +R    D  + +F R
Sbjct: 164 LLFRVYADNKMFGEALEAFEH----MEKKGFHIDERSCLVYLLALRRGGQVDSCLRFFRR 219

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M    +     + + +LD   K G VE    L +   A G K + + ++   + + +  D
Sbjct: 220 MVNLDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLD 279

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
             G+  +L  M+  GV  N+V Y  L+      GK   A+ LF+EM E G+  D    T+
Sbjct: 280 LGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTS 339

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           +I    ++   K AL L++ M +         Y  L++     G +E A+ L  +M+   
Sbjct: 340 IISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQ-GK 398

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
               +   +  +++ Y   G VD A+ L   M + G+  +V     +   L K  R D+ 
Sbjct: 399 GIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEA 458

Query: 488 VRVFGVSIDRGVKPD 502
             +    ++RGV P+
Sbjct: 459 KGLLFSMVERGVSPN 473


>gi|414585491|tpg|DAA36062.1| TPA: hypothetical protein ZEAMMB73_917988 [Zea mays]
 gi|414585492|tpg|DAA36063.1| TPA: hypothetical protein ZEAMMB73_917988 [Zea mays]
          Length = 787

 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 126/528 (23%), Positives = 225/528 (42%), Gaps = 25/528 (4%)

Query: 144 AITEIPHQPTRENALL-ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRF-GR 201
            ++++   P   NA++  L +    + +++ F  ++  +   +ET  YN  +  L   G 
Sbjct: 185 GLSDLATFPKTFNAVVSALATHGLLEPAFYCFKRLRDVSFRGLETPAYNALLSLLLTRGL 244

Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYK---TGLMPDEV 258
            F+  E L +EM ++   LD  TY   +    R    D A + F+ M +    G  P  V
Sbjct: 245 AFKAFEVL-DEMATSGCALDEGTYQLAVPALARAGRIDAARKMFDEMKQREGIGRAPVGV 303

Query: 259 TYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEM 318
            YS ++DV AK+G+++  + +Y   V  G +      + + +    SG  D    + +EM
Sbjct: 304 -YSVMVDVLAKAGRLDAAMGMYREMVVVGHRVSTAVSTAMVEALVRSGKLDAGMELWEEM 362

Query: 319 KSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWA 378
           +  G++P+  +Y  ++EA  ++G+  +A  LF +M +SG  P   T   L++++  A   
Sbjct: 363 RRGGLRPSFGLYTMVVEANARSGRLDMAAKLFGDMEKSGFFPTPATYACLVEMHASAGQV 422

Query: 379 KDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTA 438
             A+ L+  M  +        +  LL M A+  L++ A ++  +MK S +  P   + + 
Sbjct: 423 DAAMRLYHSMANSGTRPGLSTFTALLTMLANKSLLDLAAKVLLEMKASGF--PIEVTASD 480

Query: 439 MLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRG 498
           +L IY   G+ D A+     M   G+  N      L +   K    D    +    +   
Sbjct: 481 LLMIYIKDGSTDLALRWLRFMGSAGIRTNNFIIRQLFESCMKTGLYDSARSLLEAYVAGA 540

Query: 499 VKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLI-----EDNSTGFENI 553
            K D  L   +L+ +  C+       ++  L  +  K   F+  +     +        +
Sbjct: 541 AKVDLILYTSILAHLVRCQDESSERTIMDILGTSKHKAHDFMCGLFTGPEQRKQPVLSFV 600

Query: 554 KEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAH---ELLYLGTLYGLYPGLHNKTL 610
           +E F+ +  D E  A R F N L++         RA    ++ Y   L+           
Sbjct: 601 REFFQGIDYDNEESAARYFVNVLLNYLVLMGQMNRARCVWKVAYENKLFA-----KAIVF 655

Query: 611 DE---WSLDVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQLFLAETG 655
           D+   WSLDVRSLSVGAA  A    +    K +L   V+P+     TG
Sbjct: 656 DQHIAWSLDVRSLSVGAALVATVHTLHRFRKRMLYYGVVPRRIKLVTG 703


>gi|125600636|gb|EAZ40212.1| hypothetical protein OsJ_24656 [Oryza sativa Japonica Group]
          Length = 661

 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 97/345 (28%), Positives = 154/345 (44%), Gaps = 37/345 (10%)

Query: 194 MKSLRFGRQFQLIEQLANEM-VSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTG 252
           + SL   R+    E L  E  ++ EI+     Y+ ++    +      A +  + M + G
Sbjct: 263 ISSLGSARRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCG 322

Query: 253 LMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIR 312
           + PDE TYS ++D Y ++G+ E    L +   A G KP    FS +   F + G++    
Sbjct: 323 VAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAF 382

Query: 313 YVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIY 372
            VL+EM + GV+P+   YN +++  GK    G A   FD M E G+ PD  T   LI  +
Sbjct: 383 AVLREMHASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAH 442

Query: 373 GKARWAKDALELWERMRENKWPMDFILYNTLLN-------------MCADI---GLV--- 413
            K      A+EL++ MRE+  P+    YN ++N             M A++   GLV   
Sbjct: 443 CKGGRHDRAIELFDEMRESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNI 502

Query: 414 ----------------EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE 457
                           +EA    E MK +D  KP    Y A++N Y   G  D+A+ + +
Sbjct: 503 ITYTTLVDVYGRSGRFKEAVDCIEAMK-ADGLKPSPTMYHALVNAYAQRGLADHALNVVK 561

Query: 458 EMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            M   G+  + +    LI   G+ RRI +   V     + G++PD
Sbjct: 562 AMRADGLEASTVVLNSLINAFGEDRRIAEAFSVLQFMKENGLRPD 606



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/299 (23%), Positives = 141/299 (47%), Gaps = 2/299 (0%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           W+ +      +++  + P   +F  + +   R   ++Q    +  EM ++ +  D   Y+
Sbjct: 343 WESARILLKEMEADGVKPSSYVFSRI-LAGFRDRGEWQKAFAVLREMHASGVRPDRHFYN 401

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
            +I    + N    A++ F+RM + G+ PD VT++ ++D + K G+ +  + L++    S
Sbjct: 402 VMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEMRES 461

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
                   ++++  + GE   ++G+  +L EMK  G+ PN++ Y TL++  G++G+   A
Sbjct: 462 NCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEA 521

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
               + M   GL P      AL+  Y +   A  AL + + MR +      ++ N+L+N 
Sbjct: 522 VDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNSLINA 581

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
             +   + EA  + + MK  +  +PD  +YT ++         +    ++EEM   G A
Sbjct: 582 FGEDRRIAEAFSVLQFMK-ENGLRPDVITYTTLMKALIRVEQFEKVPVIYEEMITSGCA 639



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 98/196 (50%), Gaps = 1/196 (0%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F+ ++  N  P+ T  YN+ +  L   ++++ +E +  EM    +  + ITY+T++   
Sbjct: 454 LFDEMRESNC-PLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVY 512

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            R   F EA++  E M   GL P    Y A+++ YA+ G  +  L++ +   A G +   
Sbjct: 513 GRSGRFKEAVDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLEAST 572

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           +  + L   FGE         VLQ MK  G++P+++ Y TL++A+ +  +      +++E
Sbjct: 573 VVLNSLINAFGEDRRIAEAFSVLQFMKENGLRPDVITYTTLMKALIRVEQFEKVPVIYEE 632

Query: 353 MVESGLTPDEKTLTAL 368
           M+ SG  PD K    L
Sbjct: 633 MITSGCAPDRKARAML 648



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 78/180 (43%), Gaps = 3/180 (1%)

Query: 325 PNLVVYNTLLEAMGKAGKP---GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
           P+L  Y+ LL  +     P    L   L  ++ ES L PD    + LI  + +AR    A
Sbjct: 181 PDLASYSHLLALLLNTRDPPEAALLDRLLGDLRESRLEPDAPLFSDLISAFARARLPDAA 240

Query: 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
           LEL    +             L++       V EAE LF +  L+   KP   +Y A+L 
Sbjct: 241 LELLASAQAIGLTPRSNAVTALISSLGSARRVAEAEALFLEFFLAGEIKPRTRAYNALLK 300

Query: 442 IYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
            Y   G++ NA ++ +EMS+ GVA +    + L+    +A R +    +       GVKP
Sbjct: 301 GYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKP 360



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 69/152 (45%), Gaps = 20/152 (13%)

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382
           ++P+  +++ L+ A  +A  P  A  L       GLTP    +TALI   G AR   +A 
Sbjct: 217 LEPDAPLFSDLISAFARARLPDAALELLASAQAIGLTPRSNAVTALISSLGSARRVAEAE 276

Query: 383 ELWERMRENKWPMDFIL----------YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPD 432
            L+         ++F L          YN LL     IG ++ AE++ ++M       PD
Sbjct: 277 ALF---------LEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCG-VAPD 326

Query: 433 NYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
             +Y+ +++ Y   G  ++A  L +EM   GV
Sbjct: 327 EATYSLLVDAYTRAGRWESARILLKEMEADGV 358


>gi|255661208|gb|ACU25773.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 426

 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 89/290 (30%), Positives = 148/290 (51%), Gaps = 1/290 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D  TYST+IT   +  LFD+A+ W ++M +  +  D V YS ++++  K     + +S++
Sbjct: 8   DRYTYSTLITHFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
            R   +G KPD +A++ +  +FG++  +   R ++ EM+  GV P+ V Y+TLL    + 
Sbjct: 68  SRLKRAGIKPDLVAYNSMINVFGKAKLFREARSLISEMREAGVVPDTVSYSTLLTMYVEN 127

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
            K   A S+F EM E     D  T   +I +YG+   AK+A +L+  MR+     + + Y
Sbjct: 128 QKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLDMAKEADKLFWSMRKVGIEPNVVSY 187

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           NTLL +  D  L  EA  LF  M+  D  + +  +Y  M+ IYG     + A  L +EM 
Sbjct: 188 NTLLRVYGDAELFGEAIHLFRLMQRKD-IEQNVVTYNTMMMIYGKTLEHEKANNLIQEMH 246

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
             G+  N +  + +I   GK  ++D    +F      GV+ D  L   ++
Sbjct: 247 NRGIEPNAITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDHVLYQTMI 296



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 157/325 (48%), Gaps = 6/325 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K   + P + + YN  +      + F+    L +EM    +  D ++YS
Sbjct: 60  YSKAISIFSRLKRAGIKP-DLVAYNSMINVFGKAKLFREARSLISEMREAGVVPDTVSYS 118

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY +    +E   L+      
Sbjct: 119 TLLTMYVENQKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLDMAKEADKLFWSMRKV 178

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   ++ N+V YNT++   GK  +   A
Sbjct: 179 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKDIEQNVVTYNTMMMIYGKTLEHEKA 238

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R +   +D +LY T++  
Sbjct: 239 NNLIQEMHNRGIEPNAITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDHVLYQTMIVA 298

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K     +PDN      ++I    G ++ A  +F +  + G   
Sbjct: 299 YERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATWVFRQAIDAGEVK 353

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVF 491
           ++     +I    K ++  ++V VF
Sbjct: 354 DITVFERMIDLFSKYKKYPNVVEVF 378



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 128/261 (49%), Gaps = 1/261 (0%)

Query: 252 GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGI 311
            L PD  TYS ++  + K G  ++ LS  ++        D + +S L ++  +  DY   
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 312 RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371
             +   +K  G++P+LV YN+++   GKA     ARSL  EM E+G+ PD  + + L+ +
Sbjct: 64  ISIFSRLKRAGIKPDLVAYNSMINVFGKAKLFREARSLISEMREAGVVPDTVSYSTLLTM 123

Query: 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
           Y + +   +AL ++  MRE K  +D    N ++++   + + +EA++LF  M+     +P
Sbjct: 124 YVENQKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLDMAKEADKLFWSMRKVG-IEP 182

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           +  SY  +L +YG       AI LF  M    +  NV+    ++   GK    +    + 
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKDIEQNVVTYNTMMMIYGKTLEHEKANNLI 242

Query: 492 GVSIDRGVKPDDRLCGCLLSV 512
               +RG++P+      ++S+
Sbjct: 243 QEMHNRGIEPNAITYSTIISI 263



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 143/286 (50%), Gaps = 3/286 (1%)

Query: 198 RFGRQFQLIEQLA--NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMP 255
            FG++    + L+   +M  + +  D + YS +I  +++   + +AI  F R+ + G+ P
Sbjct: 18  HFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRAGIKP 77

Query: 256 DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVL 315
           D V Y+++++V+ K+    E  SL      +G  PD +++S L  M+ E+  +     V 
Sbjct: 78  DLVAYNSMINVFGKAKLFREARSLISEMREAGVVPDTVSYSTLLTMYVENQKFLEALSVF 137

Query: 316 QEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA 375
            EM+ +    +L   N +++  G+      A  LF  M + G+ P+  +   L+++YG A
Sbjct: 138 AEMREIKCLLDLTTCNIMIDVYGQLDMAKEADKLFWSMRKVGIEPNVVSYNTLLRVYGDA 197

Query: 376 RWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYS 435
               +A+ L+  M+      + + YNT++ +       E+A  L ++M  +   +P+  +
Sbjct: 198 ELFGEAIHLFRLMQRKDIEQNVVTYNTMMMIYGKTLEHEKANNLIQEMH-NRGIEPNAIT 256

Query: 436 YTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
           Y+ +++I+G  G +D A  LF+++   GV I+ +    +I    +A
Sbjct: 257 YSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDHVLYQTMIVAYERA 302



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/238 (21%), Positives = 110/238 (46%), Gaps = 31/238 (13%)

Query: 218 IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL 277
           IE + ++Y+T++       LF EAI  F  M +  +  + VTY+ ++ +Y K+ + E+  
Sbjct: 180 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKDIEQNVVTYNTMMMIYGKTLEHEKAN 239

Query: 278 SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
           +L +     G +P+ I +S +  ++G+ G  D    + Q+++S GV+ + V+Y T++ A 
Sbjct: 240 NLIQEMHNRGIEPNAITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDHVLYQTMIVAY 299

Query: 338 GKAGKPGLARSLFDEM-------------------------------VESGLTPDEKTLT 366
            +AG    A+ L  E+                               +++G   D     
Sbjct: 300 ERAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFE 359

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
            +I ++ K +   + +E++E+MR   +  D  + + +LN    +   ++A  ++  M+
Sbjct: 360 RMIDLFSKYKKYPNVVEVFEKMRGLGYFSDSNVISLVLNAYGKLHEFDKANDMYMGMQ 417



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 91/191 (47%), Gaps = 3/191 (1%)

Query: 355 ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
           E  L+PD  T + LI  +GK     DAL   ++M +++ P D +LY+ L+ +   +    
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
           +A  +F  +K +   KPD  +Y +M+N++G       A  L  EM E GV  + +  + L
Sbjct: 62  KAISIFSRLKRAG-IKPDLVAYNSMINVFGKAKLFREARSLISEMREAGVVPDTVSYSTL 120

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN- 533
           +    + ++  + + VF    +     D   C  ++ V    + +++  K+   +++   
Sbjct: 121 LTMYVENQKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLDMAKEADKLFWSMRKVGI 180

Query: 534 -PKLVAFLNLI 543
            P +V++  L+
Sbjct: 181 EPNVVSYNTLL 191



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/149 (22%), Positives = 69/149 (46%), Gaps = 4/149 (2%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  ++ S+ +E+D++ Y T+I   +R  L   A      + +    PD +     + + A
Sbjct: 276 LFQKLRSSGVEIDHVLYQTMIVAYERAGLVAHAKRLLHELKR----PDNIPRDTAIHILA 331

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
            +G++EE   ++ + + +G   D   F  +  +F +   Y  +  V ++M+ LG   +  
Sbjct: 332 GAGRIEEATWVFRQAIDAGEVKDITVFERMIDLFSKYKKYPNVVEVFEKMRGLGYFSDSN 391

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESG 357
           V + +L A GK  +   A  ++  M + G
Sbjct: 392 VISLVLNAYGKLHEFDKANDMYMGMQDEG 420


>gi|255661202|gb|ACU25770.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
          Length = 426

 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 88/283 (31%), Positives = 147/283 (51%), Gaps = 7/283 (2%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D  TYST+IT   +  LFD+A+ W ++M +  +  D V YS ++++  K       +S++
Sbjct: 8   DRYTYSTLITHFGKEGLFDDALSWLQKMEEDRVPGDLVLYSNLIELSRKLCDYSRAISIF 67

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
            R   SG  PD +A++ +  +FG++  +   R ++ EM++ GV P+ V Y TLL    + 
Sbjct: 68  SRLKRSGIAPDLVAYNSMINVFGKAKLFREARALVSEMRTAGVMPDTVSYCTLLTMYVEN 127

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
            K   A SLF EM E   + D  T   +I +YG+   AK+A +L+  MR+     + + Y
Sbjct: 128 QKFLEALSLFSEMREIQCSFDLTTCNIMIDVYGQLGMAKEADKLFWSMRKMGIEPNVVSY 187

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           NTLL +  D  L  EA  LF  M+  +  + +  +Y +M+ IYG     + A  L +EM 
Sbjct: 188 NTLLRVYGDAELFGEAIHLFRLMQRKN-IEQNVVTYNSMMVIYGKTLEHEKANNLIQEMQ 246

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVF------GVSIDR 497
           + G+  N +  + +I   GK  ++D    +F      G+ ID+
Sbjct: 247 DRGIEPNAITYSTIISIWGKVGKLDRAAMLFQKLRCSGIEIDQ 289



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 79/345 (22%), Positives = 165/345 (47%), Gaps = 6/345 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + ++   F+ +K   + P + + YN  +      + F+    L +EM +  +  D ++Y 
Sbjct: 60  YSRAISIFSRLKRSGIAP-DLVAYNSMINVFGKAKLFREARALVSEMRTAGVMPDTVSYC 118

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +     D  T + ++DVY + G  +E   L+      
Sbjct: 119 TLLTMYVENQKFLEALSLFSEMREIQCSFDLTTCNIMIDVYGQLGMAKEADKLFWSMRKM 178

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   ++ N+V YN+++   GK  +   A
Sbjct: 179 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMVIYGKTLEHEKA 238

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM + G+ P+  T + +I I+GK      A  L++++R +   +D +LY T++  
Sbjct: 239 NNLIQEMQDRGIEPNAITYSTIISIWGKVGKLDRAAMLFQKLRCSGIEIDQVLYQTMIVA 298

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL +++K     +PDN      ++I    G ++ A  +F +  E G   
Sbjct: 299 YERAGLVAHAKRLLQELK-----RPDNIPRDTAIHILAGAGRIEEATWVFRQAVEAGEVK 353

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
           ++     +I    K ++  ++V VF      G  P   +   +L+
Sbjct: 354 DITVFERMINLFSKHKKYPNVVEVFDKMRGLGYFPHSNVIALVLN 398



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 125/261 (47%), Gaps = 1/261 (0%)

Query: 252 GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGI 311
            L PD  TYS ++  + K G  ++ LS  ++        D + +S L ++  +  DY   
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDDALSWLQKMEEDRVPGDLVLYSNLIELSRKLCDYSRA 63

Query: 312 RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371
             +   +K  G+ P+LV YN+++   GKA     AR+L  EM  +G+ PD  +   L+ +
Sbjct: 64  ISIFSRLKRSGIAPDLVAYNSMINVFGKAKLFREARALVSEMRTAGVMPDTVSYCTLLTM 123

Query: 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
           Y + +   +AL L+  MRE +   D    N ++++   +G+ +EA++LF  M+     +P
Sbjct: 124 YVENQKFLEALSLFSEMREIQCSFDLTTCNIMIDVYGQLGMAKEADKLFWSMRKMG-IEP 182

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           +  SY  +L +YG       AI LF  M    +  NV+    ++   GK    +    + 
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMVIYGKTLEHEKANNLI 242

Query: 492 GVSIDRGVKPDDRLCGCLLSV 512
               DRG++P+      ++S+
Sbjct: 243 QEMQDRGIEPNAITYSTIISI 263



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/272 (23%), Positives = 138/272 (50%), Gaps = 3/272 (1%)

Query: 198 RFGRQFQLIEQLA--NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMP 255
            FG++    + L+   +M  + +  D + YS +I  +++   +  AI  F R+ ++G+ P
Sbjct: 18  HFGKEGLFDDALSWLQKMEEDRVPGDLVLYSNLIELSRKLCDYSRAISIFSRLKRSGIAP 77

Query: 256 DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVL 315
           D V Y+++++V+ K+    E  +L      +G  PD +++  L  M+ E+  +     + 
Sbjct: 78  DLVAYNSMINVFGKAKLFREARALVSEMRTAGVMPDTVSYCTLLTMYVENQKFLEALSLF 137

Query: 316 QEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA 375
            EM+ +    +L   N +++  G+ G    A  LF  M + G+ P+  +   L+++YG A
Sbjct: 138 SEMREIQCSFDLTTCNIMIDVYGQLGMAKEADKLFWSMRKMGIEPNVVSYNTLLRVYGDA 197

Query: 376 RWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYS 435
               +A+ L+  M+      + + YN+++ +       E+A  L ++M+     +P+  +
Sbjct: 198 ELFGEAIHLFRLMQRKNIEQNVVTYNSMMVIYGKTLEHEKANNLIQEMQ-DRGIEPNAIT 256

Query: 436 YTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
           Y+ +++I+G  G +D A  LF+++   G+ I+
Sbjct: 257 YSTIISIWGKVGKLDRAAMLFQKLRCSGIEID 288



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 96/244 (39%), Gaps = 36/244 (14%)

Query: 290 PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSL 349
           PD   +S L   FG+ G +D     LQ+M+   V  +LV+Y+ L+E   K      A S+
Sbjct: 7   PDRYTYSTLITHFGKEGLFDDALSWLQKMEEDRVPGDLVLYSNLIELSRKLCDYSRAISI 66

Query: 350 FDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCAD 409
           F  +  SG+ PD                                    + YN+++N+   
Sbjct: 67  FSRLKRSGIAPD-----------------------------------LVAYNSMINVFGK 91

Query: 410 IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVM 469
             L  EA  L  +M+ +    PD  SY  +L +Y        A+ LF EM E+  + ++ 
Sbjct: 92  AKLFREARALVSEMRTAG-VMPDTVSYCTLLTMYVENQKFLEALSLFSEMREIQCSFDLT 150

Query: 470 GCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCL 529
            C  +I   G+     +  ++F      G++P+      LL V    E   +   +   +
Sbjct: 151 TCNIMIDVYGQLGMAKEADKLFWSMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLM 210

Query: 530 QQAN 533
           Q+ N
Sbjct: 211 QRKN 214



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 52/240 (21%), Positives = 96/240 (40%), Gaps = 32/240 (13%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           P+  +    L +    + + ++   F  ++ +N+     + YN  M       + +    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNI-EQNVVTYNSMMVIYGKTLEHEKANN 240

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY- 267
           L  EM    IE + ITYSTII+   +    D A   F+++  +G+  D+V Y  ++  Y 
Sbjct: 241 LIQEMQDRGIEPNAITYSTIISIWGKVGKLDRAAMLFQKLRCSGIEIDQVLYQTMIVAYE 300

Query: 268 ------------------------------AKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
                                         A +G++EE   ++ + V +G   D   F  
Sbjct: 301 RAGLVAHAKRLLQELKRPDNIPRDTAIHILAGAGRIEEATWVFRQAVEAGEVKDITVFER 360

Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
           +  +F +   Y  +  V  +M+ LG  P+  V   +L A GK  +   A S++ EM + G
Sbjct: 361 MINLFSKHKKYPNVVEVFDKMRGLGYFPHSNVIALVLNAYGKLHEFDKANSVYMEMQDEG 420


>gi|414587035|tpg|DAA37606.1| TPA: hypothetical protein ZEAMMB73_100135 [Zea mays]
          Length = 547

 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 82/331 (24%), Positives = 168/331 (50%), Gaps = 6/331 (1%)

Query: 172 FFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITC 231
            F +WI+   L+  +   +NV +K +     FQ   +L   M       D IT++ ++  
Sbjct: 201 LFESWIQ-DGLYSPDVWSFNVVIKGVCRMGNFQKALELVERMTEFGCSPDTITHNILVDG 259

Query: 232 AKRCNLFDEAIEWFERMYKTGL-MPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
             R    ++  E   R+ + G+ MP+ VTY++++  Y K+GK+E+ +S+Y   + SG +P
Sbjct: 260 LCRAKQVNKGHEVLRRLQRDGVCMPNAVTYTSVISGYCKAGKMEDAMSVYNDMLESGTRP 319

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
           + + ++VL   +G++ D +    + +++      P++V +++L++   + G+   A+ ++
Sbjct: 320 NTVTYNVLINGYGKALDMESAVRMYRQLILRHCPPDVVTFSSLIDGYCRCGQLDDAKRIW 379

Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER--MRENKWPMDFILYNTLLNMCA 408
            EM    + P+  T + +I    K   + +AL++     MR +  P  FI YN ++++  
Sbjct: 380 KEMGLHHIQPNVYTFSIIIHSLCKQNRSAEALDILRELNMRTDIAPQTFI-YNPVIDILC 438

Query: 409 DIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINV 468
             G V+EA  +  DMK    C PD Y+YT ++  +   G +  AI LF +M E G   + 
Sbjct: 439 KGGKVDEANLIVTDMK-EKGCHPDKYTYTILIIGHCMKGRIPEAITLFHKMVEAGCRPDN 497

Query: 469 MGCTCLIQCLGKARRIDDLVRVFGVSIDRGV 499
           +     + C+ KA   +++ ++  ++   G+
Sbjct: 498 ITVNSFVSCVLKAGMPNEVDQIMLIASGHGL 528



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 156/342 (45%), Gaps = 11/342 (3%)

Query: 255 PDEVTYSAILDVYAKSGKVEEVLSLYERGV-ASGWKPDPIAFSVLGKMFGESGDYDGIRY 313
           P E +Y  ++    +SG+  + L L+++ +  SG+ P+   FS +      +G  D    
Sbjct: 106 PSEQSYIHVIAFLCRSGRHRDALKLFDQMMDQSGYLPEAGFFSFVAGSCTNAGLLDAAST 165

Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL-TPDEKTLTALIKIY 372
           +L +   LG       YN LL ++   G+   A +LF+  ++ GL +PD  +   +IK  
Sbjct: 166 LLTKGSRLGCCIEPYAYNYLLNSLIAHGRAQDAVALFESWIQDGLYSPDVWSFNVVIKGV 225

Query: 373 GKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPD 432
            +    + ALEL ERM E     D I +N L++       V +   +   ++    C P+
Sbjct: 226 CRMGNFQKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNKGHEVLRRLQRDGVCMPN 285

Query: 433 NYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFG 492
             +YT++++ Y   G +++A+ ++ +M E G   N +    LI   GKA  ++  VR++ 
Sbjct: 286 AVTYTSVISGYCKAGKMEDAMSVYNDMLESGTRPNTVTYNVLINGYGKALDMESAVRMYR 345

Query: 493 VSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI--TCLQQANPKLVAFLNLIEDNSTGF 550
             I R   PD      L+     C   +D  ++     L    P +  F  +I  +S   
Sbjct: 346 QLILRHCPPDVVTFSSLIDGYCRCGQLDDAKRIWKEMGLHHIQPNVYTFSIII--HSLCK 403

Query: 551 ENIKEEFRNVIKD----TEVDARRPFCNCLIDI-CRNRNLNE 587
           +N   E  +++++    T++  +    N +IDI C+   ++E
Sbjct: 404 QNRSAEALDILRELNMRTDIAPQTFIYNPVIDILCKGGKVDE 445


>gi|125558286|gb|EAZ03822.1| hypothetical protein OsI_25951 [Oryza sativa Indica Group]
          Length = 1011

 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 83/343 (24%), Positives = 174/343 (50%), Gaps = 13/343 (3%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           + Y+ ++        +D      E M ++G+ PDE T+++++ ++A  G  +    L  +
Sbjct: 470 VEYNVMVKAYGAAKRYDRVSPLLEHMNESGISPDECTFNSLIQMFATGGYPQRAKKLLGK 529

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
              +G+KP    ++        +       Y+  EMK+ GV+PN+VVY  L++   + G+
Sbjct: 530 MKYAGFKPKCETYAAAITTLSRNYLVSEAIYLYNEMKASGVEPNVVVYGVLIDTFAETGQ 589

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
              A    + M ESG+ P++  LT+LIK Y KA   K+A +L+ RM+      D +  N+
Sbjct: 590 LEEALHYNNLMEESGIAPNQIVLTSLIKAYSKANCWKEAQDLYSRMKNMDGGPDIVASNS 649

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
           +LN+ A++G+V + + +F+ ++ ++  + D+ SYT+M+++Y + G ++ ++ +  ++   
Sbjct: 650 MLNLYANLGMVTKVKEIFDCLRRNN--QADDVSYTSMISLYKNMGLLNESVRVAHDLQNS 707

Query: 463 GVAINVMGCTCLIQCL---GKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETS 519
           G+  +      ++ C    GK R   +LV+      +  + PD    G + S++   + +
Sbjct: 708 GLLSDCASYNAVMACFVAKGKLRECAELVQQMQ---EGNILPDASTFGMIFSIMKKIQIA 764

Query: 520 -EDVGKVITCLQ----QANPKLVAFLNLIEDNSTGFENIKEEF 557
            E+V ++ +        ++  ++AFL LI        NI E++
Sbjct: 765 PEEVSQLQSAYNDNRSSSSQAVIAFLFLIAGMHAAALNICEKY 807



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 77/372 (20%), Positives = 151/372 (40%), Gaps = 19/372 (5%)

Query: 142 LRAITEIPHQPTRENALLILNSL-KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFG 200
           +RA    P + +    + IL  + ++   +  F NW   +     E  F ++   +L  G
Sbjct: 173 MRARGVAPDEVSMSTFVRILKDVGRYSDAATLFDNWCNGR----FEVGFIDLDYSALDSG 228

Query: 201 RQFQ-LIEQLANEMVSN----------EIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
              Q L+E++ +  V +           I    +TY+T+I    +     +A++ F  M 
Sbjct: 229 GPMQFLLEEMCHGNVDDAGASGIQGVARIPKLAVTYNTMIDLYGKAGKLKDAMDMFMGMP 288

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
             G+  D  T++ +++++   G V+E  +L+   +  G  PD   F+V+  +F   GD +
Sbjct: 289 DYGVAADTCTFNTLINIFGSCGNVKEAEALFASMIVRGTNPDVKTFNVMMTLFASKGDVE 348

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
           G+      +  +G+  + V Y  +L  + +      A  +   ++ SG    E+ L  ++
Sbjct: 349 GVLKHYYHIGKMGLSADTVSYGIVLRVLCERKMVHEAEDVIVGIMRSGTCVPEQPLPVVM 408

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
           K+Y        A   ++R       +    +  +++  A+ G  EEAE +F   +     
Sbjct: 409 KMYIDQGLLDKANAFFDRHCRGD-EVSSKTFAAIMDAFAERGFWEEAEHVFYSHR--GVR 465

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
           +     Y  M+  YG+    D    L E M+E G++ +      LIQ            +
Sbjct: 466 RRGIVEYNVMVKAYGAAKRYDRVSPLLEHMNESGISPDECTFNSLIQMFATGGYPQRAKK 525

Query: 490 VFGVSIDRGVKP 501
           + G     G KP
Sbjct: 526 LLGKMKYAGFKP 537



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/304 (19%), Positives = 123/304 (40%), Gaps = 33/304 (10%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L NEM ++ +E + + Y  +I         +EA+ +   M ++G+ P+++  ++++  Y+
Sbjct: 561 LYNEMKASGVEPNVVVYGVLIDTFAETGQLEEALHYNNLMEESGIAPNQIVLTSLIKAYS 620

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           K+   +E   LY R       PD +A + +  ++   G    ++ +   ++    Q + V
Sbjct: 621 KANCWKEAQDLYSRMKNMDGGPDIVASNSMLNLYANLGMVTKVKEIFDCLRR-NNQADDV 679

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            Y +++      G    +  +  ++  SGL  D  +  A++  +      ++  EL ++M
Sbjct: 680 SYTSMISLYKNMGLLNESVRVAHDLQNSGLLSDCASYNAVMACFVAKGKLRECAELVQQM 739

Query: 389 RENKWPMDFILYNTLLNMCADIGL----VEEAERLFEDMKLSD----------------- 427
           +E     D   +  + ++   I +    V + +  + D + S                  
Sbjct: 740 QEGNILPDASTFGMIFSIMKKIQIAPEEVSQLQSAYNDNRSSSSQAVIAFLFLIAGMHAA 799

Query: 428 -------YCKP----DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
                  Y KP    D  +      +Y S G VD A  LF +M ELG+  +      L  
Sbjct: 800 ALNICEKYMKPVLTIDQCACNVAFKVYASCGEVDKAFSLFMQMHELGLKPDTATYIHLTT 859

Query: 477 CLGK 480
           C G+
Sbjct: 860 CYGE 863



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 54/248 (21%), Positives = 96/248 (38%), Gaps = 45/248 (18%)

Query: 312 RYVLQEMKSL-GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTP-DEKTLTALI 369
           R +L  M++L G  P+ + Y  +L  + +A + G  R ++  M   G  P   +   AL 
Sbjct: 95  RDLLDRMRALPGYAPSAIHYGVVLRHLARARRWGELRRVWARMAREGAPPPTNQAYAALA 154

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFE-------- 421
               KA  A+D+L L   MR      D +  +T + +  D+G   +A  LF+        
Sbjct: 155 DALAKAGHARDSLLLLRHMRARGVAPDEVSMSTFVRILKDVGRYSDAATLFDNWCNGRFE 214

Query: 422 ------DMKLSDYCKPDNY-----------------------------SYTAMLNIYGSG 446
                 D    D   P  +                             +Y  M+++YG  
Sbjct: 215 VGFIDLDYSALDSGGPMQFLLEEMCHGNVDDAGASGIQGVARIPKLAVTYNTMIDLYGKA 274

Query: 447 GNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLC 506
           G + +A+++F  M + GVA +      LI   G    + +   +F   I RG  PD +  
Sbjct: 275 GKLKDAMDMFMGMPDYGVAADTCTFNTLINIFGSCGNVKEAEALFASMIVRGTNPDVKTF 334

Query: 507 GCLLSVVS 514
             ++++ +
Sbjct: 335 NVMMTLFA 342



 Score = 42.4 bits (98), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 76/204 (37%), Gaps = 18/204 (8%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN  M       + +   +L  +M    I  D  T+  I +  K+  +  E +   +  Y
Sbjct: 716 YNAVMACFVAKGKLRECAELVQQMQEGNILPDASTFGMIFSIMKKIQIAPEEVSQLQSAY 775

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
                       A L + A  G     L++ E+ +      D  A +V  K++   G+ D
Sbjct: 776 NDNRSSSSQAVIAFLFLIA--GMHAAALNICEKYMKPVLTIDQCACNVAFKVYASCGEVD 833

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG--------LARSLFDEM-VESGLTP 360
               +  +M  LG++P+   Y  L    G+ G PG        L   L +EM ++   +P
Sbjct: 834 KAFSLFMQMHELGLKPDTATYIHLTTCYGEYGMPGGKMKAIFLLISQLRNEMLIQFTQSP 893

Query: 361 DEKT-------LTALIKIYGKARW 377
           D  T       L A  K+   A W
Sbjct: 894 DMLTRNSECPWLHAKCKVLTAASW 917


>gi|357139229|ref|XP_003571186.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Brachypodium distachyon]
          Length = 628

 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 100/352 (28%), Positives = 165/352 (46%), Gaps = 9/352 (2%)

Query: 136 NTEEAFLRAITEIPHQPTRENAL----LI--LNSLKFWQKSYFFFNWIKSQNLFPMETIF 189
           N     L    E+ HQ  R +      LI  L     + ++Y FF+ ++ +   P +T+ 
Sbjct: 275 NNVHGALGLFEEMRHQYCRPDVFTYTELIRGLGKAGRFDEAYNFFHEMRREGCRP-DTVV 333

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA-KRCNLFDEAIEWFERM 248
            N  +  L    +     +L  EM + +     +TY+TII    +  +   E   WFERM
Sbjct: 334 INNMINFLGKAGRLDDAVKLFEEMGTLQCIPSVVTYNTIIKALFESKSRISEISSWFERM 393

Query: 249 YKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY 308
             +G+ P   TYS ++D + K+ + E+ + L E     G+ P P A+  L    G++  Y
Sbjct: 394 KGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRY 453

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
           D    + QE+K      +  VY  +++ +GKAG+   A +LFDEM + G TP+     AL
Sbjct: 454 DIAHELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVNLFDEMNKLGCTPNVYAYNAL 513

Query: 369 IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428
           +    +A    +AL    RM+E+    D   YN +LN  A  G    A  +  +MK S  
Sbjct: 514 MSGLARAGMLDEALTTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSA- 572

Query: 429 CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK 480
            KPD  SY  +L      G  + A +L +EM+ LG   +++  + +++ +GK
Sbjct: 573 IKPDAVSYNTVLGAMSHAGLFEEAAKLMKEMNVLGFEYDLITYSSILEAIGK 624



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 94/377 (24%), Positives = 176/377 (46%), Gaps = 21/377 (5%)

Query: 130 KLNDCDNTEEAFLRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQ-NLFPMETI 188
           K+  C  T +A+   I  + H+               ++K +  +N + ++ + FP +T+
Sbjct: 182 KVRKCQPTAQAYNSMIIMLMHEGQ-------------YEKVHELYNEMSNEGHCFP-DTV 227

Query: 189 FYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
            Y+  + +  + GRQ   I +L NEM  N ++     Y+ +I    + N    A+  FE 
Sbjct: 228 TYSALISAFCKLGRQDSAI-RLLNEMKDNGMQPTAKIYTMLIALFFKLNNVHGALGLFEE 286

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M      PD  TY+ ++    K+G+ +E  + +      G +PD +  + +    G++G 
Sbjct: 287 MRHQYCRPDVFTYTELIRGLGKAGRFDEAYNFFHEMRREGCRPDTVVINNMINFLGKAGR 346

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA-GKPGLARSLFDEMVESGLTPDEKTLT 366
            D    + +EM +L   P++V YNT+++A+ ++  +     S F+ M  SG++P   T +
Sbjct: 347 LDDAVKLFEEMGTLQCIPSVVTYNTIIKALFESKSRISEISSWFERMKGSGISPSPFTYS 406

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
            LI  + K    + A+ L E M E  +P     Y +L++        + A  LF+++K  
Sbjct: 407 ILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDIAHELFQELK-- 464

Query: 427 DYCKPDNYS-YTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
           + C   +   Y  M+   G  G +D+A+ LF+EM++LG   NV     L+  L +A  +D
Sbjct: 465 ENCGSSSARVYAVMIKHLGKAGRLDDAVNLFDEMNKLGCTPNVYAYNALMSGLARAGMLD 524

Query: 486 DLVRVFGVSIDRGVKPD 502
           + +       + G  PD
Sbjct: 525 EALTTMRRMQEHGCIPD 541



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/351 (24%), Positives = 148/351 (42%), Gaps = 39/351 (11%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEI------ELDNI--- 223
           FF W   +  +  +T  Y   ++ L    Q+  + ++  EMV N +      EL +I   
Sbjct: 105 FFRWAAKKRNYEHDTSTYMALIRCLEVVEQYGEMWKMIQEMVRNPVCVVTPMELSDIIRM 164

Query: 224 ---------------------------TYSTIITCAKRCNLFDEAIEWFERMYKTG-LMP 255
                                       Y+++I        +++  E +  M   G   P
Sbjct: 165 LGNAKMISKAVAIFYQIKVRKCQPTAQAYNSMIIMLMHEGQYEKVHELYNEMSNEGHCFP 224

Query: 256 DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVL 315
           D VTYSA++  + K G+ +  + L      +G +P    +++L  +F +  +  G   + 
Sbjct: 225 DTVTYSALISAFCKLGRQDSAIRLLNEMKDNGMQPTAKIYTMLIALFFKLNNVHGALGLF 284

Query: 316 QEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA 375
           +EM+    +P++  Y  L+  +GKAG+   A + F EM   G  PD   +  +I   GKA
Sbjct: 285 EEMRHQYCRPDVFTYTELIRGLGKAGRFDEAYNFFHEMRREGCRPDTVVINNMINFLGKA 344

Query: 376 RWAKDALELWERMRENKWPMDFILYNTLLN-MCADIGLVEEAERLFEDMKLSDYCKPDNY 434
               DA++L+E M   +     + YNT++  +      + E    FE MK S    P  +
Sbjct: 345 GRLDDAVKLFEEMGTLQCIPSVVTYNTIIKALFESKSRISEISSWFERMKGSG-ISPSPF 403

Query: 435 SYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
           +Y+ +++ +      + A+ L EEM E G          LI  LGKA+R D
Sbjct: 404 TYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYD 454



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/310 (24%), Positives = 138/310 (44%), Gaps = 3/310 (0%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F  ++ Q   P +   Y   ++ L    +F       +EM       D +  + +I   
Sbjct: 283 LFEEMRHQYCRP-DVFTYTELIRGLGKAGRFDEAYNFFHEMRREGCRPDTVVINNMINFL 341

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD-VYAKSGKVEEVLSLYERGVASGWKPD 291
            +    D+A++ FE M     +P  VTY+ I+  ++    ++ E+ S +ER   SG  P 
Sbjct: 342 GKAGRLDDAVKLFEEMGTLQCIPSVVTYNTIIKALFESKSRISEISSWFERMKGSGISPS 401

Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
           P  +S+L   F ++   +    +L+EM   G  P    Y +L++A+GKA +  +A  LF 
Sbjct: 402 PFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDIAHELFQ 461

Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411
           E+ E+  +   +    +IK  GKA    DA+ L++ M +     +   YN L++  A  G
Sbjct: 462 ELKENCGSSSARVYAVMIKHLGKAGRLDDAVNLFDEMNKLGCTPNVYAYNALMSGLARAG 521

Query: 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC 471
           +++EA      M+    C PD  SY  +LN     G    A+E+   M +  +  + +  
Sbjct: 522 MLDEALTTMRRMQ-EHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSAIKPDAVSY 580

Query: 472 TCLIQCLGKA 481
             ++  +  A
Sbjct: 581 NTVLGAMSHA 590



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 107/255 (41%), Gaps = 42/255 (16%)

Query: 330 YNTLLEAMGKAGKPGLARSLFDEMVESGL---TPDEKTLTALIKIYGKARWAKDALELWE 386
           Y  L+  +    + G    +  EMV + +   TP E  L+ +I++ G A+    A+ ++ 
Sbjct: 122 YMALIRCLEVVEQYGEMWKMIQEMVRNPVCVVTPME--LSDIIRMLGNAKMISKAVAIFY 179

Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
           +++  K       YN+++ M    G  E+   L+ +M    +C PD  +Y+A+++ +   
Sbjct: 180 QIKVRKCQPTAQAYNSMIIMLMHEGQYEKVHELYNEMSNEGHCFPDTVTYSALISAFCKL 239

Query: 447 GNVDNAIELFEEMSELG-----------VAI-----NVMGC------------------- 471
           G  D+AI L  EM + G           +A+     NV G                    
Sbjct: 240 GRQDSAIRLLNEMKDNGMQPTAKIYTMLIALFFKLNNVHGALGLFEEMRHQYCRPDVFTY 299

Query: 472 TCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQ- 530
           T LI+ LGKA R D+    F      G +PD  +   +++ +      +D  K+   +  
Sbjct: 300 TELIRGLGKAGRFDEAYNFFHEMRREGCRPDTVVINNMINFLGKAGRLDDAVKLFEEMGT 359

Query: 531 -QANPKLVAFLNLIE 544
            Q  P +V +  +I+
Sbjct: 360 LQCIPSVVTYNTIIK 374


>gi|255661182|gb|ACU25760.1| pentatricopeptide repeat-containing protein [Phyla dulcis]
          Length = 426

 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 89/283 (31%), Positives = 146/283 (51%), Gaps = 7/283 (2%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D  TYST+IT   +  LFD A+ W ++M +  +  D V YS ++++  K     + +S++
Sbjct: 8   DRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
            R   SG+ PD +A++ +  +FG++  +   R ++ EMK+ GV PN   Y+TLL    + 
Sbjct: 68  SRLKNSGYTPDLVAYNAMIIVFGKAKLFREARSLISEMKTAGVIPNTTSYSTLLTMYVEN 127

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
            K   A S+F EM E     D  T   +I +YG+   AK+A +L+  MR+     + + Y
Sbjct: 128 KKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSY 187

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           NTLL +  D  L  EA  LF  M+  +  + +  +Y +M+ IYG     + A  L +EM 
Sbjct: 188 NTLLRVYGDAELFGEAIHLFRLMQRKN-IEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQ 246

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVF------GVSIDR 497
             G+  N +  + +I   GK  ++D    +F      GV ID+
Sbjct: 247 SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQ 289



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/345 (23%), Positives = 166/345 (48%), Gaps = 6/345 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K+    P + + YN  +      + F+    L +EM +  +  +  +YS
Sbjct: 60  YSKAISIFSRLKNSGYTP-DLVAYNAMIIVFGKAKLFREARSLISEMKTAGVIPNTTSYS 118

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY + G  +E   L+      
Sbjct: 119 TLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 178

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   ++ N+V YN+++   GK  +   A
Sbjct: 179 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKA 238

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R +   +D IL+ T++  
Sbjct: 239 NNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVA 298

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K     +PDN      ++I    G ++ A  +F +  + G   
Sbjct: 299 YERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVK 353

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
           ++     +I  L K ++  ++V VF      G  PD  +   +L+
Sbjct: 354 DITVFERMIHLLSKYKKYANVVEVFDKMRGLGYFPDSNVIAIVLN 398



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 137/271 (50%), Gaps = 1/271 (0%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
            +M  +++  D + YS +I  +++   + +AI  F R+  +G  PD V Y+A++ V+ K+
Sbjct: 33  QKMEQDQVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKNSGYTPDLVAYNAMIIVFGKA 92

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
               E  SL      +G  P+  ++S L  M+ E+  +     V  EM+ +    +L   
Sbjct: 93  KLFREARSLISEMKTAGVIPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTC 152

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
           N +++  G+ G    A  LF  M + G+ P+  +   L+++YG A    +A+ L+  M+ 
Sbjct: 153 NIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR 212

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
                + + YN+++ +       E+A  L ++M+ S   +P++ +Y+ +++I+G  G +D
Sbjct: 213 KNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQ-SRGIEPNSITYSTIISIWGKVGKLD 271

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
            A  LF+++   GV I+ +    +I    +A
Sbjct: 272 RAAMLFQKLRSSGVEIDQILFQTMIVAYERA 302



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 124/261 (47%), Gaps = 1/261 (0%)

Query: 252 GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGI 311
            L PD  TYS ++  + K G  +  LS  ++        D + +S L ++  +  DY   
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 312 RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371
             +   +K+ G  P+LV YN ++   GKA     ARSL  EM  +G+ P+  + + L+ +
Sbjct: 64  ISIFSRLKNSGYTPDLVAYNAMIIVFGKAKLFREARSLISEMKTAGVIPNTTSYSTLLTM 123

Query: 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
           Y + +   +AL ++  MRE K  +D    N ++++   +G+ +EA++LF  M+     +P
Sbjct: 124 YVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG-IEP 182

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           +  SY  +L +YG       AI LF  M    +  NV+    +I   GK    +    + 
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLI 242

Query: 492 GVSIDRGVKPDDRLCGCLLSV 512
                RG++P+      ++S+
Sbjct: 243 QEMQSRGIEPNSITYSTIISI 263



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 83/343 (24%), Positives = 157/343 (45%), Gaps = 40/343 (11%)

Query: 156 NALLIL-NSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMV 214
           NA++I+    K ++++    + +K+  + P  T  Y+  +      ++F     + +EM 
Sbjct: 83  NAMIIVFGKAKLFREARSLISEMKTAGVIP-NTTSYSTLLTMYVENKKFLEALSVFSEMR 141

Query: 215 SNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVE 274
             +  LD  T + +I    +  +  EA + F  M K G+ P+ V+Y+ +L VY  +    
Sbjct: 142 EIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFG 201

Query: 275 EVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLL 334
           E + L+        + + + ++ +  ++G++ +++    ++QEM+S G++PN + Y+T++
Sbjct: 202 EAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTII 261

Query: 335 EAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWP 394
              GK GK   A  LF ++  SG+  D+     +I  Y +A     A  L   + E K P
Sbjct: 262 SIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRL---LHELKRP 318

Query: 395 MDFILYNTLLNMCADIGLVEEAERLF---------EDMK--------LSDYCK------- 430
            D I  +T +++ A  G +EEA  +F         +D+         LS Y K       
Sbjct: 319 -DNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYANVVEV 377

Query: 431 ----------PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
                     PD+     +LN YG     D A +++ EM E+G
Sbjct: 378 FDKMRGLGYFPDSNVIAIVLNAYGKLHEFDKANDVYMEMQEVG 420



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 101/244 (41%), Gaps = 36/244 (14%)

Query: 290 PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSL 349
           PD   +S L   FG+ G +D     LQ+M+   V  +LV+Y+ L+E         L+R L
Sbjct: 7   PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIE---------LSRKL 57

Query: 350 FDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCAD 409
            D                    Y KA      + ++ R++ + +  D + YN ++ +   
Sbjct: 58  CD--------------------YSKA------ISIFSRLKNSGYTPDLVAYNAMIIVFGK 91

Query: 410 IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVM 469
             L  EA  L  +MK +    P+  SY+ +L +Y        A+ +F EM E+   +++ 
Sbjct: 92  AKLFREARSLISEMKTAGVI-PNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLT 150

Query: 470 GCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCL 529
            C  +I   G+     +  ++F      G++P+      LL V    E   +   +   +
Sbjct: 151 TCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLM 210

Query: 530 QQAN 533
           Q+ N
Sbjct: 211 QRKN 214



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 86/191 (45%), Gaps = 3/191 (1%)

Query: 355 ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
           +  L+PD  T + LI  +GK      AL   ++M +++ P D +LY+ L+ +   +    
Sbjct: 2   QRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELSRKLCDYS 61

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
           +A  +F  +K S Y  PD  +Y AM+ ++G       A  L  EM   GV  N    + L
Sbjct: 62  KAISIFSRLKNSGYT-PDLVAYNAMIIVFGKAKLFREARSLISEMKTAGVIPNTTSYSTL 120

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN- 533
           +    + ++  + + VF    +     D   C  ++ V      +++  K+   +++   
Sbjct: 121 LTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180

Query: 534 -PKLVAFLNLI 543
            P +V++  L+
Sbjct: 181 EPNVVSYNTLL 191


>gi|359493285|ref|XP_003634559.1| PREDICTED: pentatricopeptide repeat-containing protein At5g57250,
           mitochondrial-like [Vitis vinifera]
          Length = 993

 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/320 (27%), Positives = 165/320 (51%), Gaps = 14/320 (4%)

Query: 175 NWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQL--ANEMVSNEIELDNITYSTIITCA 232
           +W++ +  F  + +FY+  +    + R+  L+E +    EM+   I  D ++Y+ +I   
Sbjct: 147 SWMEREE-FVFDVVFYSSWICG--YFREGVLVEAIRKHKEMIEKGIAPDTVSYTILIDGF 203

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            R    ++AI + E+M K GL P+ VTY+AI+  + K GK++E  +L++     G + D 
Sbjct: 204 SREGYVEKAIGFLEKMKKDGLKPNLVTYTAIMLGFCKKGKLDEAYTLFKMVENLGIEVDE 263

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
             +  L   F   GD D +  +L++M+  G+ P++V YN+++  + KAG+   A    DE
Sbjct: 264 FMYVTLIDGFCTRGDIDCVFGLLEDMEKRGISPSIVTYNSIINGLCKAGRTSEA----DE 319

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
            V  G+  D  T + L+  Y +    K  LE   R+ E+   +D ++ NT++     +G 
Sbjct: 320 -VSKGIAGDAVTFSTLLHGYIEEENVKGILETKRRLEEDGVCIDLVMCNTIIKALLMVGA 378

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC- 471
           +E+A   ++ M   D    D+ +Y  M+N Y     ++ A+E+F+E  +   +I+ + C 
Sbjct: 379 LEDAYAFYKGMSGMDLV-ADSVTYCTMINGYCRVSRIEEALEIFDEFRK--TSISSVSCY 435

Query: 472 TCLIQCLGKARRIDDLVRVF 491
            C+I  L +   +D  + VF
Sbjct: 436 KCMIYGLCRKGMVDMAIEVF 455



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 97/196 (49%), Gaps = 1/196 (0%)

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
           D + +S++  +  + G  D    +   +K  G+  N+  YN+++  + + G    A  LF
Sbjct: 638 DLVDYSIMIDVLCKEGHLDKALDLCAFVKKKGIALNIYAYNSVINGLCRQGCLVQAFRLF 697

Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
           D + +  L P E T   LI    K     DA +L+E+M    +  +  +YN+L++     
Sbjct: 698 DSLEKIDLVPSEITYATLIDSLCKEGCLLDAKQLFEKMVIKGFNPNVRVYNSLIDGYCKF 757

Query: 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG 470
           G +EEA  L  D+K +   KPD ++ +A++N Y   G+++ A+  F E  +  +  + +G
Sbjct: 758 GNMEEALNLLIDLK-ARCIKPDEFTVSALINGYCHKGDMEGALGFFFEFKKKDILPDFLG 816

Query: 471 CTCLIQCLGKARRIDD 486
              L++ L    R+++
Sbjct: 817 FMYLVRGLCAKGRMEE 832



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 67/136 (49%), Gaps = 4/136 (2%)

Query: 223 ITYSTIIT--CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           ITY+T+I   C + C L  +A + FE+M   G  P+   Y++++D Y K G +EE L+L 
Sbjct: 710 ITYATLIDSLCKEGCLL--DAKQLFEKMVIKGFNPNVRVYNSLIDGYCKFGNMEEALNLL 767

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
               A   KPD    S L   +   GD +G      E K   + P+ + +  L+  +   
Sbjct: 768 IDLKARCIKPDEFTVSALINGYCHKGDMEGALGFFFEFKKKDILPDFLGFMYLVRGLCAK 827

Query: 341 GKPGLARSLFDEMVES 356
           G+   AR +  EM+++
Sbjct: 828 GRMEEARGILREMLQT 843



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 88/207 (42%), Gaps = 37/207 (17%)

Query: 218 IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL 277
           I L+   Y+++I    R     +A   F+ + K  L+P E+TY+ ++D   K G + +  
Sbjct: 670 IALNIYAYNSVINGLCRQGCLVQAFRLFDSLEKIDLVPSEITYATLIDSLCKEGCLLDAK 729

Query: 278 SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
            L+E+ V  G+                                    PN+ VYN+L++  
Sbjct: 730 QLFEKMVIKGF-----------------------------------NPNVRVYNSLIDGY 754

Query: 338 GKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDF 397
            K G    A +L  ++    + PDE T++ALI  Y      + AL  +   ++     DF
Sbjct: 755 CKFGNMEEALNLLIDLKARCIKPDEFTVSALINGYCHKGDMEGALGFFFEFKKKDILPDF 814

Query: 398 ILYNTLL-NMCADIGLVEEAERLFEDM 423
           + +  L+  +CA  G +EEA  +  +M
Sbjct: 815 LGFMYLVRGLCAK-GRMEEARGILREM 840



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 98/220 (44%), Gaps = 4/220 (1%)

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL--VVYNTLLEAMGKAGKPG 344
           G  P    F  L   F   G       VL+ M    V+      V ++++    K  KP 
Sbjct: 45  GILPSSFTFHSLIHSFTSQGKMSRAIEVLELMTHDKVRYPFGNFVSSSVISGFCKISKPQ 104

Query: 345 LARSLFDEMVESG-LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
           LA   F+  V S  L P+  T TAL+    +    ++  +L   M   ++  D + Y++ 
Sbjct: 105 LAVGFFENAVNSRVLRPNIATCTALLGALFQLGRVREVSDLVSWMEREEFVFDVVFYSSW 164

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           +      G++ EA R  ++M +     PD  SYT +++ +   G V+ AI   E+M + G
Sbjct: 165 ICGYFREGVLVEAIRKHKEM-IEKGIAPDTVSYTILIDGFSREGYVEKAIGFLEKMKKDG 223

Query: 464 VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
           +  N++  T ++    K  ++D+   +F +  + G++ D+
Sbjct: 224 LKPNLVTYTAIMLGFCKKGKLDEAYTLFKMVENLGIEVDE 263


>gi|255660858|gb|ACU25598.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
          Length = 418

 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/318 (27%), Positives = 157/318 (49%), Gaps = 7/318 (2%)

Query: 148 IPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQL-- 205
           +P    R+  L  L  LK+++  + F+  I     +P    F+N+ M   RF ++ ++  
Sbjct: 99  VPFDTCRK-VLEHLMKLKYFKLVWDFYKEILECG-YPASLYFFNIVMH--RFCKEGEMRR 154

Query: 206 IEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
            + + + +    +    ++++T++    R    DE       M+ +G+ PD  TYS +++
Sbjct: 155 AQSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLIN 214

Query: 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325
              K  KV+E   L+   +  G  P+ + F+ L  +  ++G  D    + ++M S G  P
Sbjct: 215 GLCKESKVDEANELFNEMLDRGLVPNGVTFTTLIDVHCKNGMVDSAMEIYKQMLSQGFSP 274

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
           +L+ YNTL+  + K G     R+L DEM  +GL PD+ T T LI    K    + A E  
Sbjct: 275 DLITYNTLIYGLCKKGDLKQVRALIDEMSMNGLKPDKITYTTLIDGCCKEGDLETAFEFR 334

Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445
           +RM +    +D + Y  L++     G  ++AE++F +M LS   KPDN +YT ++N +  
Sbjct: 335 KRMIKESIRLDNVAYTALVSGLCQEGRADDAEKMFREM-LSVGLKPDNGTYTMIINEFCK 393

Query: 446 GGNVDNAIELFEEMSELG 463
            G+V  A  L +EM   G
Sbjct: 394 KGDVRTASRLLKEMQRDG 411



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 133/261 (50%), Gaps = 1/261 (0%)

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
           ++++ + + G       ++ ++  + K G++    S+++     G +P  ++F+ L   +
Sbjct: 122 DFYKEILECGYPASLYFFNIVMHRFCKEGEMRRAQSVFDAITKWGLRPSVVSFNTLMNGY 181

Query: 303 GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
              GD D    +   M + GVQP++  Y+ L+  + K  K   A  LF+EM++ GL P+ 
Sbjct: 182 IRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKVDEANELFNEMLDRGLVPNG 241

Query: 363 KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED 422
            T T LI ++ K      A+E++++M    +  D I YNTL+      G +++   L ++
Sbjct: 242 VTFTTLIDVHCKNGMVDSAMEIYKQMLSQGFSPDLITYNTLIYGLCKKGDLKQVRALIDE 301

Query: 423 MKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKAR 482
           M ++   KPD  +YT +++     G+++ A E  + M +  + ++ +  T L+  L +  
Sbjct: 302 MSMNGL-KPDKITYTTLIDGCCKEGDLETAFEFRKRMIKESIRLDNVAYTALVSGLCQEG 360

Query: 483 RIDDLVRVFGVSIDRGVKPDD 503
           R DD  ++F   +  G+KPD+
Sbjct: 361 RADDAEKMFREMLSVGLKPDN 381



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 69/153 (45%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           ++  +M+S     D ITY+T+I    +     +     + M   GL PD++TY+ ++D  
Sbjct: 262 EIYKQMLSQGFSPDLITYNTLIYGLCKKGDLKQVRALIDEMSMNGLKPDKITYTTLIDGC 321

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            K G +E      +R +    + D +A++ L     + G  D    + +EM S+G++P+ 
Sbjct: 322 CKEGDLETAFEFRKRMIKESIRLDNVAYTALVSGLCQEGRADDAEKMFREMLSVGLKPDN 381

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTP 360
             Y  ++    K G    A  L  EM   G  P
Sbjct: 382 GTYTMIINEFCKKGDVRTASRLLKEMQRDGHVP 414



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 79/156 (50%), Gaps = 3/156 (1%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIIT-CA 232
           +  + SQ   P + I YN  +  L      + +  L +EM  N ++ D ITY+T+I  C 
Sbjct: 264 YKQMLSQGFSP-DLITYNTLIYGLCKKGDLKQVRALIDEMSMNGLKPDKITYTTLIDGCC 322

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
           K  +L + A E+ +RM K  +  D V Y+A++    + G+ ++   ++   ++ G KPD 
Sbjct: 323 KEGDL-ETAFEFRKRMIKESIRLDNVAYTALVSGLCQEGRADDAEKMFREMLSVGLKPDN 381

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
             ++++   F + GD      +L+EM+  G  P +V
Sbjct: 382 GTYTMIINEFCKKGDVRTASRLLKEMQRDGHVPCVV 417



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 59/253 (23%), Positives = 98/253 (38%), Gaps = 48/253 (18%)

Query: 256 DEVTYSAILDVYAKSGKVEEVLSLYERGVASG-WKPDPIAFSVLG-----KMFGESGDYD 309
           D   +S ++  Y +SG V + +  +        W P      VL      K F    D+ 
Sbjct: 65  DIYVFSGLMTAYLESGFVHDAIQCFRLTKKHKFWVPFDTCRKVLEHLMKLKYFKLVWDF- 123

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
                 +E+   G   +L  +N ++    K G+   A+S+FD + + GL P         
Sbjct: 124 -----YKEILECGYPASLYFFNIVMHRFCKEGEMRRAQSVFDAITKWGLRPS-------- 170

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
                                       + +NTL+N    +G ++E  RL   M  S   
Sbjct: 171 ---------------------------VVSFNTLMNGYIRLGDLDEGFRLKSAMHASG-V 202

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
           +PD Y+Y+ ++N       VD A ELF EM + G+  N +  T LI    K   +D  + 
Sbjct: 203 QPDVYTYSVLINGLCKESKVDEANELFNEMLDRGLVPNGVTFTTLIDVHCKNGMVDSAME 262

Query: 490 VFGVSIDRGVKPD 502
           ++   + +G  PD
Sbjct: 263 IYKQMLSQGFSPD 275


>gi|449437410|ref|XP_004136485.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Cucumis sativus]
 gi|449519964|ref|XP_004167004.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Cucumis sativus]
          Length = 534

 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/331 (24%), Positives = 157/331 (47%), Gaps = 4/331 (1%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           FFNW  +   F      YN  +      +QF L   L + M +  +E+  +T+S ++   
Sbjct: 134 FFNWATAGEGFEHSPQPYNEMIDLAGKVKQFGLAWYLIDLMKARNVEITVVTFSMLVRRY 193

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            R  L  EA+  F RM   G   D + +S ++ +  K  +  E  S ++  +   ++PD 
Sbjct: 194 VRAGLAAEAVHAFNRMEDYGCNADIIAFSNVISILCKKRRAVEAQSFFD-NLKHKFEPDV 252

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           I ++ L   +  +GD      V +EMK  G+ PN+  Y+ +++A+ ++G+   A  +F E
Sbjct: 253 IVYTSLVHGWCRAGDISEAESVFREMKMAGISPNVYTYSIVIDALCRSGQITRAHDVFAE 312

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL-NMCADIG 411
           M+++G  P+  T   LI+++ +A   +  L+++ +M+  +   D I YN L+   C D  
Sbjct: 313 MLDAGCNPNSVTFNNLIRVHLRAGRTEKVLQVYNQMKRLRCAADLITYNFLIETHCKDDN 372

Query: 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC 471
           L  EA ++   M  +D C P+  S+  +        +V+ A  +F  M E+G   N +  
Sbjct: 373 L-GEAIKVLNSMAKND-CTPNASSFNPIFRCIAKSQDVNGAHRMFARMKEVGCKPNTVTY 430

Query: 472 TCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
             L++     +  D + ++     +  V+P+
Sbjct: 431 NILMRMFAVPKSADMIFKLKKEMDEEEVEPN 461



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 119/248 (47%), Gaps = 5/248 (2%)

Query: 214 VSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKV 273
           + ++ E D I Y++++    R     EA   F  M   G+ P+  TYS ++D   +SG++
Sbjct: 244 LKHKFEPDVIVYTSLVHGWCRAGDISEAESVFREMKMAGISPNVYTYSIVIDALCRSGQI 303

Query: 274 EEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTL 333
                ++   + +G  P+ + F+ L ++   +G  + +  V  +MK L    +L+ YN L
Sbjct: 304 TRAHDVFAEMLDAGCNPNSVTFNNLIRVHLRAGRTEKVLQVYNQMKRLRCAADLITYNFL 363

Query: 334 LEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKW 393
           +E   K    G A  + + M ++  TP+  +   + +   K++    A  ++ RM+E   
Sbjct: 364 IETHCKDDNLGEAIKVLNSMAKNDCTPNASSFNPIFRCIAKSQDVNGAHRMFARMKEVGC 423

Query: 394 PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD--YCKPDNYSYTAMLNIYGSGGNVDN 451
             + + YN L+ M A   + + A+ +F+  K  D    +P+  +Y  ++ +Y   G+ ++
Sbjct: 424 KPNTVTYNILMRMFA---VPKSADMIFKLKKEMDEEEVEPNFNTYRELIALYCGMGHWNH 480

Query: 452 AIELFEEM 459
           A   F EM
Sbjct: 481 AYMFFREM 488



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/263 (19%), Positives = 108/263 (41%), Gaps = 15/263 (5%)

Query: 176 WIKSQNLFPMETIF--------------YNVTMKSLRFGRQFQLIEQLANEMVSNEIELD 221
           W ++ ++   E++F              Y++ + +L    Q      +  EM+      +
Sbjct: 262 WCRAGDISEAESVFREMKMAGISPNVYTYSIVIDALCRSGQITRAHDVFAEMLDAGCNPN 321

Query: 222 NITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYE 281
           ++T++ +I    R    ++ ++ + +M +     D +TY+ +++ + K   + E + +  
Sbjct: 322 SVTFNNLIRVHLRAGRTEKVLQVYNQMKRLRCAADLITYNFLIETHCKDDNLGEAIKVLN 381

Query: 282 RGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG 341
               +   P+  +F+ + +   +S D +G   +   MK +G +PN V YN L+       
Sbjct: 382 SMAKNDCTPNASSFNPIFRCIAKSQDVNGAHRMFARMKEVGCKPNTVTYNILMRMFAVPK 441

Query: 342 KPGLARSLFDEMVESGLTPDEKTLTALIKIY-GKARWAKDALELWERMRENKWPMDFILY 400
              +   L  EM E  + P+  T   LI +Y G   W    +   E + E        LY
Sbjct: 442 SADMIFKLKKEMDEEEVEPNFNTYRELIALYCGMGHWNHAYMFFREMIDEKCIKPSMPLY 501

Query: 401 NTLLNMCADIGLVEEAERLFEDM 423
             +L      G +++ E L + M
Sbjct: 502 KMVLEELRKAGQLKKHEELVDKM 524



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 84/212 (39%), Gaps = 37/212 (17%)

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           P    F N+    LR GR  +++ Q+ N+M       D ITY+ +I    + +   EAI+
Sbjct: 320 PNSVTFNNLIRVHLRAGRTEKVL-QVYNQMKRLRCAADLITYNFLIETHCKDDNLGEAIK 378

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
               M K    P+  +++ I    AKS  V     ++ R    G KP+ + +++L +MF 
Sbjct: 379 VLNSMAKNDCTPNASSFNPIFRCIAKSQDVNGAHRMFARMKEVGCKPNTVTYNILMRMFA 438

Query: 304 ESGDYDGIRYVLQEMKSLGVQPN------------------------------------L 327
                D I  + +EM    V+PN                                    +
Sbjct: 439 VPKSADMIFKLKKEMDEEEVEPNFNTYRELIALYCGMGHWNHAYMFFREMIDEKCIKPSM 498

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
            +Y  +LE + KAG+      L D+MVE G  
Sbjct: 499 PLYKMVLEELRKAGQLKKHEELVDKMVERGFA 530


>gi|218199303|gb|EEC81730.1| hypothetical protein OsI_25362 [Oryza sativa Indica Group]
          Length = 583

 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 96/366 (26%), Positives = 170/366 (46%), Gaps = 5/366 (1%)

Query: 136 NTEEAFLRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMK 195
           N  E  LRA    P + T  N +    +   W+K+      +    + P + + +N+ + 
Sbjct: 67  NIMEDMLRAAIP-PTRTTYNNVINACGAAGNWKKALELCKKMTENGVGP-DLVTHNIVLS 124

Query: 196 SLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY--KTGL 253
           +L+ G Q+         M    +  D  T + II C  +     EAIE F  M   +T  
Sbjct: 125 ALKNGAQYSKAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKC 184

Query: 254 MPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRY 313
            PD VTY++I+  Y   G+VE   ++++  VA G KP+ +A++ L   +   G +     
Sbjct: 185 PPDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALA 244

Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYG 373
           +   +K  G++P++V Y +LL A G++ +P  AR +F++M ++   P++ +  ALI  YG
Sbjct: 245 IFNLIKKNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYG 304

Query: 374 KARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDN 433
            A   K+A+ L   M ++    D +  +TLL  C     +   E + E  + S     + 
Sbjct: 305 SAGMLKEAVGLLHEMEKDGIQPDVVSISTLLAACGRCRQITRIETILEAAR-SRGIDLNT 363

Query: 434 YSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGV 493
            +Y + +  Y S G+ + A+EL+  M E  V  + +    LI    K  +  + +R F  
Sbjct: 364 VAYNSGIKSYLSFGDYEKALELYTSMRESNVKPDAVTYNILISGSSKLGKYTESLRFFED 423

Query: 494 SIDRGV 499
            +D  V
Sbjct: 424 MVDSKV 429



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/360 (21%), Positives = 147/360 (40%), Gaps = 38/360 (10%)

Query: 177 IKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCN 236
           +K+Q+ +      Y + ++      Q      L  EM     + D   Y+++I    R  
Sbjct: 1   MKNQDNYCARNDIYGMMIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAG 60

Query: 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS 296
            +  AI   E M +  + P   TY+ +++    +G  ++ L L ++   +G  PD +  +
Sbjct: 61  QWRWAINIMEDMLRAAIPPTRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHN 120

Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA---------- 346
           ++         Y       + MK   V  +    N ++  + K G+ G A          
Sbjct: 121 IVLSALKNGAQYSKAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRER 180

Query: 347 ---------------------------RSLFDEMVESGLTPDEKTLTALIKIYGKARWAK 379
                                      +++FD MV  G+ P+     +L+  Y      +
Sbjct: 181 RTKCPPDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHR 240

Query: 380 DALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAM 439
           +AL ++  +++N    D + Y +LLN        E+A  +F  MK  + CKP+  SY A+
Sbjct: 241 EALAIFNLIKKNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMK-KNSCKPNKVSYNAL 299

Query: 440 LNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGV 499
           ++ YGS G +  A+ L  EM + G+  +V+  + L+   G+ R+I  +  +   +  RG+
Sbjct: 300 IDAYGSAGMLKEAVGLLHEMEKDGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGI 359



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 73/318 (22%), Positives = 152/318 (47%), Gaps = 10/318 (3%)

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           P + + Y   M S     Q +  + + + MV+  ++ + + Y++++       +  EA+ 
Sbjct: 185 PPDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALA 244

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
            F  + K GL PD V+Y+++L+ Y +S + E+   ++ +   +  KP+ ++++ L   +G
Sbjct: 245 IFNLIKKNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYG 304

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
            +G       +L EM+  G+QP++V  +TLL A G+  +     ++ +     G+  +  
Sbjct: 305 SAGMLKEAVGLLHEMEKDGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGIDLNTV 364

Query: 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
              + IK Y      + ALEL+  MRE+    D + YN L++  + +G   E+ R FEDM
Sbjct: 365 AYNSGIKSYLSFGDYEKALELYTSMRESNVKPDAVTYNILISGSSKLGKYTESLRFFEDM 424

Query: 424 KLSDYCKPDNYSYT------AMLNIYGSGG----NVDNAIELFEEMSELGVAINVMGCTC 473
             S       + +T      ++  +   G     +   A E+ E +     +I+V     
Sbjct: 425 VDSKVSSTKEFLWTIRWLEESLGPVQRDGSKWIRDWKTASEMIEYLDSSLSSISVGTLNH 484

Query: 474 LIQCLGKARRIDDLVRVF 491
           ++  LGK  + ++++++F
Sbjct: 485 VLNFLGKCGKTENMMKLF 502



 Score = 96.3 bits (238), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 68/283 (24%), Positives = 135/283 (47%), Gaps = 3/283 (1%)

Query: 222 NITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYE 281
           N  Y  +I    R N  D+A   F  M +    PD   Y++++  ++++G+    +++ E
Sbjct: 11  NDIYGMMIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIME 70

Query: 282 RGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG 341
             + +   P    ++ +    G +G++     + ++M   GV P+LV +N +L A+    
Sbjct: 71  DMLRAAIPPTRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGA 130

Query: 342 KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE--NKWPMDFIL 399
           +   A S F+ M  + +T D  TL  +I    K     +A+EL+  MRE   K P D + 
Sbjct: 131 QYSKAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVT 190

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           Y ++++     G VE  + +F D+ +++  KP+  +Y ++L  Y S G    A+ +F  +
Sbjct: 191 YTSIMHSYCIYGQVENCKAIF-DLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLI 249

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            + G+  +++  T L+   G++ + +    VF        KP+
Sbjct: 250 KKNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPN 292


>gi|147789724|emb|CAN67401.1| hypothetical protein VITISV_025967 [Vitis vinifera]
          Length = 592

 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/364 (25%), Positives = 164/364 (45%), Gaps = 35/364 (9%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
            N +K++   P + + YN+ + SL   R+  L   + ++++ +      ITY+ +I    
Sbjct: 170 LNRMKARGFLP-DIVTYNIMIGSLCNRRKLGLALTVLDQLLLDNCMPTVITYTILIEATI 228

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
                +EA++  E M   GL+PD  TY+AI+    K G VE    L     + G +PD I
Sbjct: 229 VEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCEPDVI 288

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
           ++++L + F   G +D    ++ EM S G +PN V Y+ L+ ++ + G+   A S+   M
Sbjct: 289 SYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVM 348

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
           +E  LTPD  +   LI    K      A+ + + M  N    D + YNT+L      G  
Sbjct: 349 IEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNA 408

Query: 414 EEAERLFEDMK----------------------------------LSDYCKPDNYSYTAM 439
            +A  +F  ++                                  +S    PD  +Y ++
Sbjct: 409 NQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGIDPDEITYNSL 468

Query: 440 LNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGV 499
           ++     G V+ AI L ++M + G    V+    ++  L K RRIDD + +F   I++G 
Sbjct: 469 ISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGC 528

Query: 500 KPDD 503
           +P++
Sbjct: 529 RPNE 532



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 64/270 (23%), Positives = 133/270 (49%), Gaps = 1/270 (0%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + I YN+ +++     ++   E+L  EM S   E + +TYS +I+   R    DEAI   
Sbjct: 286 DVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVL 345

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           + M +  L PD  +Y  ++    K G+++  + + +  +++G  PD + ++ +     ++
Sbjct: 346 KVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKN 405

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G+ +    +  +++ +G  PN+  YNT++ A+   G    A  +   M+  G+ PDE T 
Sbjct: 406 GNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGIDPDEITY 465

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
            +LI    +    ++A+ L + M ++ +    I YN +L     +  +++A  +F +M +
Sbjct: 466 NSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEM-I 524

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIEL 455
              C+P+  +Y  ++   G  G    A+EL
Sbjct: 525 EKGCRPNETTYILLIEGIGFAGWRTEAMEL 554



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 115/275 (41%), Gaps = 37/275 (13%)

Query: 263 ILDVYAKSGKVEEVLSLYERGVASGWKPDPI----------------------------- 293
           +L+   K+GK  E L   E  V  G+ PD I                             
Sbjct: 84  LLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEILESHT 143

Query: 294 -----AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348
                A++ +   F +    +    VL  MK+ G  P++V YN ++ ++    K GLA +
Sbjct: 144 EPDVFAYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALT 203

Query: 349 LFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL-NMC 407
           + D+++     P   T T LI+         +A++L E M       D   YN ++  MC
Sbjct: 204 VLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMC 263

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
            + G+VE A  L   +  S  C+PD  SY  +L  + + G  D   +L  EM   G   N
Sbjct: 264 KE-GMVERAAELITSLT-SKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPN 321

Query: 468 VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            +  + LI  L +  RID+ + V  V I++ + PD
Sbjct: 322 KVTYSILISSLCRFGRIDEAISVLKVMIEKELTPD 356


>gi|255558280|ref|XP_002520167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540659|gb|EEF42222.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/307 (29%), Positives = 148/307 (48%), Gaps = 2/307 (0%)

Query: 180 QNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFD 239
           + +FP   I+  +     + G   Q   +L +EM + EI  D+I +S +I          
Sbjct: 209 RGVFPDHVIYTTLIDGFCKLGNT-QAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVV 267

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           EA + F  M K G  PDEVTY+A++D Y K G++++   L+ + V  G  P+ + ++ L 
Sbjct: 268 EADKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALA 327

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
               +SG+ D    +L EM   G+Q N+  YNT++  + KAG    A  L +EM E+GL 
Sbjct: 328 DGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLH 387

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
           PD  T T L+  Y K      A EL   M +       + +N L+N     G +E+ ERL
Sbjct: 388 PDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERL 447

Query: 420 FEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479
            + M L     P+  +Y +++  Y    N+  + E++  M   GV  +      LI+   
Sbjct: 448 LKWM-LEKGIMPNAATYNSIMKQYCIRNNMRISTEIYRGMCAQGVVPDSNTYNILIKGHC 506

Query: 480 KARRIDD 486
           KAR + +
Sbjct: 507 KARNMKE 513



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 87/301 (28%), Positives = 141/301 (46%), Gaps = 1/301 (0%)

Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS 261
           + Q + QL  EM    ++ +  TYS+II    +     E  +    M K G+ PD V Y+
Sbjct: 160 ELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYT 219

Query: 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
            ++D + K G  +    L+    A    PD IAFS L      SG       +  EM   
Sbjct: 220 TLIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKK 279

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
           G +P+ V Y  L++   K G+   A  L ++MV+ GLTP+  T TAL     K+     A
Sbjct: 280 GFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTA 339

Query: 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
            EL   M      ++   YNT++N     G + +A +L E+MK +    PD  +YT +++
Sbjct: 340 NELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGL-HPDTITYTTLMD 398

Query: 442 IYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
            Y   G +  A EL  EM + G+   V+    L+  L  + +++D  R+    +++G+ P
Sbjct: 399 AYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMP 458

Query: 502 D 502
           +
Sbjct: 459 N 459



 Score =  105 bits (262), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/279 (27%), Positives = 131/279 (46%), Gaps = 1/279 (0%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           +Y+ ++    R     EA     RM   G +PD V+Y+ I+D Y   G++++V+ L +  
Sbjct: 112 SYNILMNSLFRLGKIREAHHLLMRMEFKGCIPDVVSYTTIIDGYCHVGELQKVVQLVKEM 171

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
              G KP+   +S +  +  +SG       VL+EM   GV P+ V+Y TL++   K G  
Sbjct: 172 QLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTTLIDGFCKLGNT 231

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
             A  LF EM    + PD    +ALI     +    +A +L+  M +  +  D + Y  L
Sbjct: 232 QAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTAL 291

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           ++    +G +++A  L   M +     P+  +YTA+ +     G +D A EL  EM   G
Sbjct: 292 IDGYCKLGEMKKAFFLHNQM-VQIGLTPNVVTYTALADGLCKSGELDTANELLHEMCRKG 350

Query: 464 VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           + +N+     ++  L KA  I   V++     + G+ PD
Sbjct: 351 LQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPD 389



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 136/294 (46%), Gaps = 2/294 (0%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           +K++F  N +    L P   + Y      L    +     +L +EM    ++L+  TY+T
Sbjct: 302 KKAFFLHNQMVQIGLTP-NVVTYTALADGLCKSGELDTANELLHEMCRKGLQLNISTYNT 360

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           I+    +     +A++  E M + GL PD +TY+ ++D Y K+G++ +   L    +  G
Sbjct: 361 IVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLREMLDRG 420

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
            +P  + F+VL      SG  +    +L+ M   G+ PN   YN++++         ++ 
Sbjct: 421 LQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQYCIRNNMRIST 480

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
            ++  M   G+ PD  T   LIK + KAR  K+A  L + M E ++ +    YN L+   
Sbjct: 481 EIYRGMCAQGVVPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKRFNLTASSYNALIKGF 540

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461
                + EA +LFE+M+           Y   +++    GN++  +EL +E  E
Sbjct: 541 FKRKKLLEARQLFEEMRREGLVASAEI-YNLFVDMNYEEGNMETTLELCDEAIE 593



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 84/365 (23%), Positives = 174/365 (47%), Gaps = 21/365 (5%)

Query: 171 YFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIIT 230
           Y + +W    ++F    +F+ V +++       +  ++L N  V+    L   + +  +T
Sbjct: 30  YTYKDWGSDPHVFD---VFFQVLVEAGLLNEARKFFDKLLNYGVA----LSAGSCNLYLT 82

Query: 231 C--AKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
           C  +KR ++    ++ F    + G+  +  +Y+ +++   + GK+ E   L  R    G 
Sbjct: 83  CLSSKR-DMLGMVLKVFSEFPQLGVCWNTESYNILMNSLFRLGKIREAHHLLMRMEFKGC 141

Query: 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348
            PD ++++ +   +   G+   +  +++EM+  G++PNL  Y++++  + K+GK      
Sbjct: 142 IPDVVSYTTIIDGYCHVGELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEK 201

Query: 349 LFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCA 408
           +  EM++ G+ PD    T LI  + K    + A +L+  M   +   D I ++ L+   +
Sbjct: 202 VLREMMKRGVFPDHVIYTTLIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLS 261

Query: 409 DIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINV 468
             G V EA++LF +M    + +PD  +YTA+++ Y   G +  A  L  +M ++G+  NV
Sbjct: 262 GSGKVVEADKLFNEMIKKGF-EPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNV 320

Query: 469 MGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD--------DRLC--GCLLSVVSLCET 518
           +  T L   L K+  +D    +      +G++ +        + LC  G +L  V L E 
Sbjct: 321 VTYTALADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEE 380

Query: 519 SEDVG 523
            ++ G
Sbjct: 381 MKEAG 385



 Score = 42.4 bits (98), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 38/172 (22%), Positives = 76/172 (44%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
            + +NV M  L    + +  E+L   M+   I  +  TY++I+      N    + E + 
Sbjct: 425 VVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQYCIRNNMRISTEIYR 484

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
            M   G++PD  TY+ ++  + K+  ++E   L++  V   +     +++ L K F +  
Sbjct: 485 GMCAQGVVPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKRFNLTASSYNALIKGFFKRK 544

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
                R + +EM+  G+  +  +YN  ++   + G       L DE +E  L
Sbjct: 545 KLLEARQLFEEMRREGLVASAEIYNLFVDMNYEEGNMETTLELCDEAIEKCL 596


>gi|255547572|ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545894|gb|EEF47397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 594

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 97/392 (24%), Positives = 187/392 (47%), Gaps = 7/392 (1%)

Query: 116 SYNPRVRDLKLFARKLNDCDNTEEA--FLRAITEIPHQPTRENALLILNSL---KFWQKS 170
            Y P V    +    L     T  A  +++ + E+  +P   +  +I++SL   +   ++
Sbjct: 204 GYQPTVYTHTMIVNGLCKIGKTSAAIVWMKKMVELDCEPEVVSYSIIIDSLCKNRLVNEA 263

Query: 171 YFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIIT 230
              F  ++S  + P   + YN  +  +    Q++    L  EM+   ++ D +T+S ++ 
Sbjct: 264 VDLFYHMRSIGISP-TVVTYNSLIYGMCNSGQWKQASILFKEMLEWNMKPDVVTFSILVD 322

Query: 231 CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
              +  +  EA+  F +M +  + PD VTYS+++    KS   +E  +L    ++   +P
Sbjct: 323 ALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNIRP 382

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
           D + FS+   +F + G     + ++  M   G++PN+V YN+L++      +   AR +F
Sbjct: 383 DVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVF 442

Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
           D MV  G  PD  +   LIK Y K+    +A +L++ M       + I + TL++     
Sbjct: 443 DIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTTLISGLCQA 502

Query: 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG 470
           G    A+ LF+ M  S  C PD  +Y+ +L+ +   G++D A+ LFE + +  +  N + 
Sbjct: 503 GRPYAAKELFKKMG-SHGCPPDLITYSTLLSGFCKHGHLDEALALFEALKKSQLKPNHVI 561

Query: 471 CTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           C  L+  + KA +++D   +F       ++PD
Sbjct: 562 CKILLGGMCKAGKLEDAKELFSSLSIEELQPD 593



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/371 (20%), Positives = 160/371 (43%), Gaps = 49/371 (13%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           +FN +   N FP  T F N  + +L   + +  +  +  +M    +     T + +I C 
Sbjct: 91  YFNQMVHMNPFPCITQF-NQLLAALVRMKHYDSVVSIYRKMEFFGVSCSVYTLTILINCL 149

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWK--- 289
              +L         +++K G  P  +T++ +++     G++ E +   +  ++ G++   
Sbjct: 150 CHLHLVGLGFSVLGKIFKLGFKPSIITFNTLINGLCIEGRIVEAMEQLDYIMSRGYQPTV 209

Query: 290 --------------------------------PDPIAFSVL------GKMFGESGDYDGI 311
                                           P+ +++S++       ++  E+ D    
Sbjct: 210 YTHTMIVNGLCKIGKTSAAIVWMKKMVELDCEPEVVSYSIIIDSLCKNRLVNEAVD---- 265

Query: 312 RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371
             +   M+S+G+ P +V YN+L+  M  +G+   A  LF EM+E  + PD  T + L+  
Sbjct: 266 --LFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWNMKPDVVTFSILVDA 323

Query: 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
             K     +AL ++ +M +     D + Y++L++      L +E+  L  +M LS   +P
Sbjct: 324 LCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLNEM-LSRNIRP 382

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           D  +++  ++++   G V  A  +   M E G+  NV+    L+       ++D+  +VF
Sbjct: 383 DVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVF 442

Query: 492 GVSIDRGVKPD 502
            + +++G  PD
Sbjct: 443 DIMVNKGCAPD 453


>gi|115482066|ref|NP_001064626.1| Os10g0421800 [Oryza sativa Japonica Group]
 gi|113639235|dbj|BAF26540.1| Os10g0421800, partial [Oryza sativa Japonica Group]
          Length = 973

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 164/335 (48%), Gaps = 7/335 (2%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           Y+V M +    R  + +  L  EM ++ ++ +  +Y+  I    +   FDEA     +M 
Sbjct: 233 YSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKME 292

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
             G  PD +T++ ++ V   +G++ +   ++ +   S  KPD + +  L   FG++GD  
Sbjct: 293 NEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQ 352

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
            +  +   MK+ G   N+V Y  +++A+ + G+   A  +FDEM + G+ P++ +  +LI
Sbjct: 353 SVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLI 412

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
             + KA    DALEL++ M  +    +   +   +N     G   +A + +E MK S   
Sbjct: 413 SGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMK-SKGI 471

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
            PD  +  A+L      G +  A  +F E+  +GV+ + +  T +I+C  KA + D+ V+
Sbjct: 472 VPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVK 531

Query: 490 VFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGK 524
           +F   I+    PD      +L+V SL +T    G+
Sbjct: 532 IFYDMIENNCVPD------VLAVNSLIDTLYKAGR 560



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/363 (22%), Positives = 166/363 (45%), Gaps = 36/363 (9%)

Query: 218 IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL 277
           I L+  TY+ ++    +     EA+E +  M   G++P   TYS ++  + K   VE VL
Sbjct: 191 IVLNAYTYNGLVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVL 250

Query: 278 SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
            L     A G KP+  ++++  ++ G++  +D    +L +M++ G +P+++ +  L++ +
Sbjct: 251 WLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVL 310

Query: 338 GKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDF 397
             AG+   A+ +F +M +S   PD  T   L+  +G    ++  +E+W  M+ + +  + 
Sbjct: 311 CDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNV 370

Query: 398 ILYNTLLNMCADIGLVEEAERLFEDMK--------------LSDYC-------------- 429
           + Y  +++    +G V EA  +F++MK              +S +               
Sbjct: 371 VAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKH 430

Query: 430 ------KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483
                 KP+ Y++   +N YG  G    AI+ +E M   G+  +V+    ++  L K+ R
Sbjct: 431 MDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGR 490

Query: 484 IDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAFLN 541
           +    RVF      GV PD      ++   S     ++  K+   + + N  P ++A  +
Sbjct: 491 LGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNS 550

Query: 542 LIE 544
           LI+
Sbjct: 551 LID 553



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 96/406 (23%), Positives = 184/406 (45%), Gaps = 25/406 (6%)

Query: 115 YSYNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTRENALLILN-------SLKFW 167
           YSYN  +    L A +  D     E F       P +P     +L +N       S+K  
Sbjct: 406 YSYNSLISGF-LKADRFGD---ALELFKHMDIHGP-KPNGYTHVLFINYYGKSGESIKAI 460

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           Q+    +  +KS+ + P + +  N  +  L    +  + +++ +E+ +  +  D ITY+ 
Sbjct: 461 QR----YELMKSKGIVP-DVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTM 515

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           +I C  + + FDEA++ F  M +   +PD +  ++++D   K+G+ +E   ++ +     
Sbjct: 516 MIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMN 575

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
            +P    ++ L    G  G    + ++L+EM      PNL+ YNT+L+ + K G    A 
Sbjct: 576 LEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDAL 635

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
            +   M   G  PD  +   +I    K     +A  ++ +M++   P D+    T+L   
Sbjct: 636 DMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMKKVLIP-DYATLCTILPSF 694

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
             IGL++EA  + +D  L    K D  S  +++        ++ +IE  E ++  G+ ++
Sbjct: 695 VKIGLMKEALHIIKDYFLQPGSKTDRSSCHSLMEGILKKAGIEKSIEFAEIIASSGITLD 754

Query: 468 VMGCTCLIQCLGKARR---IDDLV---RVFGVSIDRGVKPDDRLCG 507
                 LI+ L K ++     +LV   + FGVS+  G+  +  +CG
Sbjct: 755 DFFLCPLIKHLCKQKKALEAHELVKKFKSFGVSLKTGLY-NSLICG 799



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 126/256 (49%), Gaps = 3/256 (1%)

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M + G++ +  TY+ ++    KSG   E L +Y   +  G  P    +SVL   FG+  D
Sbjct: 186 MKEAGIVLNAYTYNGLVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRD 245

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
            + + ++L+EM++ GV+PN+  Y   +  +G+A +   A  +  +M   G  PD  T T 
Sbjct: 246 VETVLWLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTV 305

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           LI++   A    DA +++ +M+++    D + Y TLL+   D G  +    ++  MK   
Sbjct: 306 LIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADG 365

Query: 428 YCKPDN-YSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
           Y   DN  +YTA+++     G V  A+E+F+EM + G+         LI    KA R  D
Sbjct: 366 Y--NDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGD 423

Query: 487 LVRVFGVSIDRGVKPD 502
            + +F      G KP+
Sbjct: 424 ALELFKHMDIHGPKPN 439



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 87/348 (25%), Positives = 163/348 (46%), Gaps = 14/348 (4%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           +++  F  +K  NL P +   YN  +  L    + + +  L  EM  +    + ITY+TI
Sbjct: 563 EAWRIFYQLKEMNLEPTDGT-YNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTI 621

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
           + C  +    ++A++    M   G +PD  +Y+ ++    K  +  E  S++ + +    
Sbjct: 622 LDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQ-MKKVL 680

Query: 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP----NLVVYNTLLEAMGKAGKPG 344
            PD      +   F + G    ++  L  +K   +QP    +    ++L+E + K  K G
Sbjct: 681 IPDYATLCTILPSFVKIGL---MKEALHIIKDYFLQPGSKTDRSSCHSLMEGILK--KAG 735

Query: 345 LARSL-FDEMV-ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
           + +S+ F E++  SG+T D+  L  LIK   K + A +A EL ++ +     +   LYN+
Sbjct: 736 IEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKSFGVSLKTGLYNS 795

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
           L+    D  L++ AE LF +MK    C PD ++Y  +L+  G    ++  +++ EEM   
Sbjct: 796 LICGLVDENLIDIAEGLFAEMKELG-CGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRK 854

Query: 463 GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
           G     +    +I  L K+RR++  + ++   + +G  P     G LL
Sbjct: 855 GYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLL 902



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/323 (22%), Positives = 139/323 (43%), Gaps = 8/323 (2%)

Query: 181 NLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDE 240
           +L    T+ Y + +K  R+   F +  Q+   ++      D  T  TI+    +  L  E
Sbjct: 649 DLSSYNTVIYGL-VKEERYNEAFSIFCQMKKVLIP-----DYATLCTILPSFVKIGLMKE 702

Query: 241 AIEWFERMY-KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           A+   +  + + G   D  +  ++++   K   +E+ +   E   +SG   D      L 
Sbjct: 703 ALHIIKDYFLQPGSKTDRSSCHSLMEGILKKAGIEKSIEFAEIIASSGITLDDFFLCPLI 762

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
           K   +         ++++ KS GV     +YN+L+  +       +A  LF EM E G  
Sbjct: 763 KHLCKQKKALEAHELVKKFKSFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELGCG 822

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
           PDE T   L+   GK+   ++ L++ E M    +   ++ YNT+++       +E+A  L
Sbjct: 823 PDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDL 882

Query: 420 FEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479
           + ++ +S    P   +Y  +L+     G +++A  LF EM E G   N      L+    
Sbjct: 883 YYNL-MSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHR 941

Query: 480 KARRIDDLVRVFGVSIDRGVKPD 502
            A   + +  +F   +D+G+ PD
Sbjct: 942 IAGNTEKVCHLFQDMVDQGINPD 964



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 83/185 (44%)

Query: 185 METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEW 244
           ++T  YN  +  L       + E L  EM       D  TY+ ++    +    +E ++ 
Sbjct: 788 LKTGLYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKV 847

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
            E M++ G     VTY+ I+    KS ++E+ + LY   ++ G+ P P  +  L     +
Sbjct: 848 QEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLK 907

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
           +G  +    +  EM   G + N  +YN LL     AG       LF +MV+ G+ PD K+
Sbjct: 908 AGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKS 967

Query: 365 LTALI 369
            T +I
Sbjct: 968 YTIII 972



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 111/274 (40%), Gaps = 37/274 (13%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           +KS  F   I S  +  ++  F    +K L   ++     +L  +  S  + L    Y++
Sbjct: 737 EKSIEFAEIIASSGI-TLDDFFLCPLIKHLCKQKKALEAHELVKKFKSFGVSLKTGLYNS 795

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           +I      NL D A   F  M + G  PDE TY+ +LD   KS ++EE+L          
Sbjct: 796 LICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLK--------- 846

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
                                     V +EM   G +   V YNT++  + K+ +   A 
Sbjct: 847 --------------------------VQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAI 880

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
            L+  ++  G +P   T   L+    KA   +DA  L+  M E     +  +YN LLN  
Sbjct: 881 DLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGH 940

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
              G  E+   LF+DM +     PD  SYT +++
Sbjct: 941 RIAGNTEKVCHLFQDM-VDQGINPDIKSYTIIID 973



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 69/318 (21%), Positives = 128/318 (40%), Gaps = 39/318 (12%)

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
           + + G + EV  + +R +    K +   F+ +    G  G        L  MK  G+  N
Sbjct: 138 HGRVGDMAEVFDVMQRQIV---KANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLN 194

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR------W--- 377
              YN L+  + K+G    A  ++  M+  G+ P  +T + L+  +GK R      W   
Sbjct: 195 AYTYNGLVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLR 254

Query: 378 -----------------------AK---DALELWERMRENKWPMDFILYNTLLNMCADIG 411
                                  AK   +A  +  +M       D I +  L+ +  D G
Sbjct: 255 EMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAG 314

Query: 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC 471
            + +A+ +F  MK SD  KPD  +Y  +L+ +G  G+  + +E++  M   G   NV+  
Sbjct: 315 RISDAKDVFWKMKKSDQ-KPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAY 373

Query: 472 TCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ 531
           T +I  L +  R+ + + +F     +G+ P+      L+S     +   D  ++   +  
Sbjct: 374 TAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDI 433

Query: 532 ANPKLVAFLNLIEDNSTG 549
             PK   + +++  N  G
Sbjct: 434 HGPKPNGYTHVLFINYYG 451



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 106/245 (43%), Gaps = 13/245 (5%)

Query: 309 DGIRYVLQEMKSLGVQPNLV----VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
           DG    L+  +S   +P +       N +LE M   G+ G    +FD M    +  +  T
Sbjct: 103 DGPAEALERFRSAARKPRVAHTTASCNYMLELMRGHGRVGDMAEVFDVMQRQIVKANVGT 162

Query: 365 LTAL---IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFE 421
             A+   + + G  R A  AL +   M+E    ++   YN L+      G   EA  ++ 
Sbjct: 163 FAAIFGGLGVEGGLRSAPVALPV---MKEAGIVLNAYTYNGLVYFLVKSGFDREALEVYR 219

Query: 422 DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
            M + D   P   +Y+ ++  +G   +V+  + L  EM   GV  NV   T  I+ LG+A
Sbjct: 220 VM-MVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQA 278

Query: 482 RRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAF 539
           +R D+  R+     + G KPD      L+ V+       D   V   +++++  P  V +
Sbjct: 279 KRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTY 338

Query: 540 LNLIE 544
           + L++
Sbjct: 339 ITLLD 343


>gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/320 (28%), Positives = 154/320 (48%), Gaps = 7/320 (2%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           +TY+T+I      +   EA   F RM K G  PD VTY  ++     +G +   L L++ 
Sbjct: 140 VTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQE 199

Query: 283 GVAS------GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA 336
            +          KP+ I ++++     + G  D  + + +EMK+ G+ P+++ YN+L+  
Sbjct: 200 MLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHG 259

Query: 337 MGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMD 396
              AGK   ++ L DEM++ GL PD  T   LI    K     +A +L   M E+    D
Sbjct: 260 FCCAGKWEESKRLLDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPD 319

Query: 397 FILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELF 456
            + YN+L+     +G +  A  LF  M  S  C+PD  SY  ++N Y     V+ A++L+
Sbjct: 320 LVTYNSLIEGFCMVGDLNSARELFVSMP-SKGCEPDVISYNVLINGYSKTLKVEEAMKLY 378

Query: 457 EEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLC 516
            EM  +G   NV+    L++ +  A ++DD  ++F V    G+  +    G  L  +   
Sbjct: 379 NEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKN 438

Query: 517 ETSEDVGKVITCLQQANPKL 536
           +   +  K+ T L+ +N KL
Sbjct: 439 DCLFEAMKLFTELKSSNFKL 458



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 146/302 (48%), Gaps = 3/302 (0%)

Query: 203 FQLIEQLANEMVSNEIEL--DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTY 260
            +L +++ N++   EI    + ITY+ I+    +    DEA + FE M   G++P  ++Y
Sbjct: 194 LKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPSIISY 253

Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
           ++++  +  +GK EE   L +  +  G +PD + F+VL     + G     + +L  M  
Sbjct: 254 NSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIE 313

Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380
            G+ P+LV YN+L+E     G    AR LF  M   G  PD  +   LI  Y K    ++
Sbjct: 314 SGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEE 373

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
           A++L+  M       + I Y++LL      G V++A++LF  MK     + ++Y+Y   L
Sbjct: 374 AMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAE-NSYTYGIFL 432

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
           +       +  A++LF E+      + +    CLI  L KA +++    +F    + G +
Sbjct: 433 DGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHE 492

Query: 501 PD 502
           P+
Sbjct: 493 PN 494



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 136/286 (47%), Gaps = 7/286 (2%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           + YN  +K L    +     +L   M       D +TY T+I         + A++  + 
Sbjct: 140 VTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQE 199

Query: 248 M------YKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKM 301
           M      Y+    P+ +TY+ I+D   K G+ +E   L+E     G  P  I+++ L   
Sbjct: 200 MLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHG 259

Query: 302 FGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD 361
           F  +G ++  + +L EM   G+QP++V +N L++ + K GK   A+ L   M+ESG+ PD
Sbjct: 260 FCCAGKWEESKRLLDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPD 319

Query: 362 EKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFE 421
             T  +LI+ +        A EL+  M       D I YN L+N  +    VEEA +L+ 
Sbjct: 320 LVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYN 379

Query: 422 DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
           +M L    +P+  +Y ++L      G VD+A +LF  M   G+A N
Sbjct: 380 EMLLVGK-RPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAEN 424



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 153/320 (47%), Gaps = 9/320 (2%)

Query: 187 TIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTII---TCAKRCNLFDEAI 242
            I YN+ +  L + GR+ +  +QL  EM +  +    I+Y+++I    CA +   ++E+ 
Sbjct: 215 VITYNIIVDGLCKVGREDE-AKQLFEEMKTQGMIPSIISYNSLIHGFCCAGK---WEESK 270

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
              + M   GL PD VT++ ++D   K GKV E   L    + SG  PD + ++ L + F
Sbjct: 271 RLLDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGF 330

Query: 303 GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
              GD +  R +   M S G +P+++ YN L+    K  K   A  L++EM+  G  P+ 
Sbjct: 331 CMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNV 390

Query: 363 KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED 422
            T  +L+K    A    DA +L+  M+ +    +   Y   L+       + EA +LF +
Sbjct: 391 ITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTE 450

Query: 423 MKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKAR 482
           +K S++ K +  +   +++     G ++ A ELFE++S  G   NV+  T +I    +  
Sbjct: 451 LKSSNF-KLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREG 509

Query: 483 RIDDLVRVFGVSIDRGVKPD 502
           ++D    +       G  PD
Sbjct: 510 QVDKANVLIQKMEANGCTPD 529



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 80/336 (23%), Positives = 160/336 (47%), Gaps = 7/336 (2%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIE--QLANEMVSNEIELDNIT 224
           W++S    + +  Q L P + + +NV + +L   ++ ++IE  +L   M+ + I  D +T
Sbjct: 266 WEESKRLLDEMLDQGLQP-DMVTFNVLIDTL--CKEGKVIEAKKLLGVMIESGIVPDLVT 322

Query: 225 YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
           Y+++I         + A E F  M   G  PD ++Y+ +++ Y+K+ KVEE + LY   +
Sbjct: 323 YNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEML 382

Query: 285 ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344
             G +P+ I +  L K    +G  D  + +   MK+ G+  N   Y   L+ + K     
Sbjct: 383 LVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLF 442

Query: 345 LARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
            A  LF E+  S    + + L  LI    KA   + A EL+E++       + + Y  ++
Sbjct: 443 EAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMI 502

Query: 405 NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
           +     G V++A  L + M+ ++ C PD  +Y  ++  +     ++  ++L   M++  V
Sbjct: 503 HGFCREGQVDKANVLIQKME-ANGCTPDIITYNTLMRGFYESNKLEEVVQLLHRMAQKDV 561

Query: 465 AINVMGCTCLIQCLGKARRIDDLVRVFG-VSIDRGV 499
           + + + C+ ++  L K  +  + + +     I +GV
Sbjct: 562 SPDAITCSIVVDMLSKDEKYQECLHLLPRFPIQKGV 597



 Score = 59.7 bits (143), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 82/184 (44%), Gaps = 9/184 (4%)

Query: 325 PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384
           P+L  +N LL  + K        SL+++M  SGL+ D  TL  L+         ++    
Sbjct: 67  PSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNILLNCLCNVNRLREGFAA 126

Query: 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM-KLSDYCKPDNYSYTAMLNIY 443
           +  +    +  + + YNTL+        + EA RLF  M KL   C PD  +Y  ++   
Sbjct: 127 FAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLG--CTPDVVTYGTLIKGL 184

Query: 444 GSGGNVDNAIELFEEM------SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDR 497
              GN++ A++L +EM       E+    NV+    ++  L K  R D+  ++F     +
Sbjct: 185 CGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQ 244

Query: 498 GVKP 501
           G+ P
Sbjct: 245 GMIP 248


>gi|125549696|gb|EAY95518.1| hypothetical protein OsI_17364 [Oryza sativa Indica Group]
          Length = 847

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 130/548 (23%), Positives = 231/548 (42%), Gaps = 26/548 (4%)

Query: 126 LFARKLNDCDNTEE--AFLRAITEIPHQPTRENALLILNSLK--FWQKSYFFFNWIKSQN 181
           L A +L   +++ E  ++LR +  + H   R   L    S      + ++F F  ++   
Sbjct: 209 LLAARLAPANHSSELLSYLRYLCLMSHALPRPQRLFSPCSCTHGLLEPAFFCFKRLRDAG 268

Query: 182 LFPMETIFYNVTMKSLRF-GRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDE 240
              +ET  YN  +  L   G  F+  E L +EM S+   LD  TY  ++    R    D 
Sbjct: 269 FRVLETHAYNALLSLLLTRGLAFKAFEVL-DEMSSSGCALDEGTYELVVPALARAGRIDA 327

Query: 241 AIEWFERMYKT-GL-MPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
           A + F+ M K  G+       Y  ++DV AK+G+++  + +Y   VA G +  P   + +
Sbjct: 328 ARKMFDEMRKREGIGRASAGMYGVLVDVLAKAGRLDAAMGMYREMVAVGHRASPAVSTAM 387

Query: 299 GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
            +    +G  D    + +EM+  G++P+  +Y  ++EA  ++G+  +A  LF +M +SG 
Sbjct: 388 VEGLVRAGKLDAGMELWEEMRRGGLRPSFGLYTMVVEANARSGRLDVATQLFGDMEKSGF 447

Query: 359 TPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAER 418
            P   T   L++++  A     A+ L+  M           +  LL M A+  +++ A +
Sbjct: 448 FPTPATYACLVEMHASAGQVDAAMRLYHSMANAGQRPGLSTFTALLMMLANKRMLDLAAK 507

Query: 419 LFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL 478
           +  +MK S +  P   + + +L IY   G+ + A+     M   G+  N      L +  
Sbjct: 508 VLLEMKASGF--PIEVTASDLLMIYIKEGSTELALRWLRFMGSAGIRTNNFIIRQLFESC 565

Query: 479 GKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVA 538
            K    D    +    +    K D  L   +L+ +  C+       ++  L  +  K   
Sbjct: 566 MKTGLYDSARPLLETYVAGAAKVDLILYTSILAHLVRCQDEGRERAIMDILSVSKHKAHD 625

Query: 539 FLNLI-----EDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAH--- 590
           F+  +     +        ++E F+ +  D E  A R F N L++         RA    
Sbjct: 626 FMCGLFTGPEQRKKPVLSFVREFFQGIDYDNEESAARYFVNVLLNYLVLMGQMNRARCIW 685

Query: 591 ELLYLGTLYGLYPGLHNKTLDE---WSLDVRSLSVGAAQTALEEWMWTLAKIVLREEVLP 647
           ++ Y   L+           D+   WSLDVR+LSVGAA  A    +    K +L   V+P
Sbjct: 686 KVAYENKLFA-----KAIVFDQHIAWSLDVRNLSVGAALVATVHTLHRFRKRMLYYGVVP 740

Query: 648 QLFLAETG 655
           +     TG
Sbjct: 741 RRIKLVTG 748


>gi|449483905|ref|XP_004156728.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g40400-like [Cucumis sativus]
          Length = 636

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/338 (25%), Positives = 161/338 (47%), Gaps = 20/338 (5%)

Query: 148 IPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIE 207
           IPH   R+ + ++L     +  +  FFNW+K      + +  Y + +  L + RQF L  
Sbjct: 97  IPHLGHRQISKILLRCQSNFVSALAFFNWVKYDLDIRLSSHNYCLIIHILAWSRQFPLAM 156

Query: 208 QLANEMV--SNEIELDNITYSTIITCAKRCN-----------------LFDEAIEWFERM 248
           +  +E++  S ++      +  ++ C + CN                 L  E+   F++M
Sbjct: 157 KFLSELIELSKDVSSSEDVFQNLVLCTEHCNWNPVIFEMLIKAYVKLDLIHESYWSFKKM 216

Query: 249 YKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY 308
            K G +P+ +  + IL+  AK     +   LYE     G   +   F++L  +    GD 
Sbjct: 217 VKLGFVPNVIACNCILNGLAKMKSDAQCWELYEEMGRIGVHSNAYTFNILTYVLCRDGDV 276

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
           + I   L++M+  G  P++V YNTL+++  + G+   A  L+  M   G+ PD  + T+L
Sbjct: 277 NKINGFLEKMEEEGFDPDVVTYNTLIDSYVRRGRLEDAFYLYKIMYRRGVMPDLVSYTSL 336

Query: 369 IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428
           ++   +    ++A +L+ RM +     D +LYNTL+      G+++EA  L  +M +   
Sbjct: 337 MRGLCRLGRVREAHQLFHRMIDRGMDPDVVLYNTLIGAYCKDGMLQEARSLLHEM-IGIG 395

Query: 429 CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
             PD+++   ++  YG  G + +A+ L  E+ +LGV +
Sbjct: 396 IHPDSFTCRILVEGYGREGRLISALNLVVEIQKLGVTV 433



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 68/299 (22%), Positives = 127/299 (42%), Gaps = 34/299 (11%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D ++Y++++    R     EA + F RM   G+ PD V Y+ ++  Y K G ++E  SL 
Sbjct: 329 DLVSYTSLMRGLCRLGRVREAHQLFHRMIDRGMDPDVVLYNTLIGAYCKDGMLQEARSLL 388

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
              +  G  PD     +L + +G  G       ++ E++ LGV     +Y  L+ ++ + 
Sbjct: 389 HEMIGIGIHPDSFTCRILVEGYGREGRLISALNLVVEIQKLGVTVAHDIYKYLIISLCRE 448

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
            +P  A+SL + ++E    PD      LI+ + ++    +AL L   M    +      Y
Sbjct: 449 DRPFAAKSLLERILEDSFQPDSDIYNKLIESFCRSNNVSEALLLKLEMINRNYKPTTDTY 508

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSD--------------YCKP--------------- 431
            +L++   +I    + E L  +M  S+              YCK                
Sbjct: 509 KSLIHCMCEINRSVDGEGLMVEMVESEVIPDHEICRALVNGYCKEGNADKAESLLVSFAQ 568

Query: 432 -----DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
                D+ S+ +++ +Y   GN    +EL + M + G   N + C  +I  + K+ R++
Sbjct: 569 DFQFFDSESFNSLVKVYRDVGNETKLMELQDRMLKAGFLPNSLTCRYIIHGIWKSMRLN 627


>gi|449450197|ref|XP_004142850.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g40400-like [Cucumis sativus]
          Length = 632

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/338 (25%), Positives = 161/338 (47%), Gaps = 20/338 (5%)

Query: 148 IPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIE 207
           IPH   R+ + ++L     +  +  FFNW+K      + +  Y + +  L + RQF L  
Sbjct: 93  IPHLGHRQISKILLRCQSNFVSALAFFNWVKYDLDIRLSSHNYCLIIHILAWSRQFPLAM 152

Query: 208 QLANEMV--SNEIELDNITYSTIITCAKRCN-----------------LFDEAIEWFERM 248
           +  +E++  S ++      +  ++ C + CN                 L  E+   F++M
Sbjct: 153 KFLSELIELSKDVSSSEDVFQNLVLCTEHCNWNPVIFEMLIKAYVKLDLIHESYWSFKKM 212

Query: 249 YKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY 308
            K G +P+ +  + IL+  AK     +   LYE     G   +   F++L  +    GD 
Sbjct: 213 VKLGFVPNVIACNCILNGLAKMKSDAQCWELYEEMGRIGVHSNAYTFNILTYVLCRDGDV 272

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
           + I   L++M+  G  P++V YNTL+++  + G+   A  L+  M   G+ PD  + T+L
Sbjct: 273 NKINGFLEKMEEEGFDPDVVTYNTLIDSYVRRGRLEDAFYLYKIMYRRGVMPDLVSYTSL 332

Query: 369 IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428
           ++   +    ++A +L+ RM +     D +LYNTL+      G+++EA  L  +M +   
Sbjct: 333 MRGLCRLGRVREAHQLFHRMIDRGMDPDVVLYNTLIGAYCKDGMLQEARSLLHEM-IGIG 391

Query: 429 CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
             PD+++   ++  YG  G + +A+ L  E+ +LGV +
Sbjct: 392 IHPDSFTCRILVEGYGREGRLISALNLVVEIQKLGVTV 429



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 68/299 (22%), Positives = 127/299 (42%), Gaps = 34/299 (11%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D ++Y++++    R     EA + F RM   G+ PD V Y+ ++  Y K G ++E  SL 
Sbjct: 325 DLVSYTSLMRGLCRLGRVREAHQLFHRMIDRGMDPDVVLYNTLIGAYCKDGMLQEARSLL 384

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
              +  G  PD     +L + +G  G       ++ E++ LGV     +Y  L+ ++ + 
Sbjct: 385 HEMIGIGIHPDSFTCRILVEGYGREGRLISALNLVVEIQKLGVTVAHDIYKYLIISLCRE 444

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
            +P  A+SL + ++E    PD      LI+ + ++    +AL L   M    +      Y
Sbjct: 445 DRPFAAKSLLERILEDSFQPDSDIYNKLIESFCRSNNVSEALLLKLEMINRNYKPTTDTY 504

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSD--------------YCKP--------------- 431
            +L++   +I    + E L  +M  S+              YCK                
Sbjct: 505 KSLIHCMCEINRSVDGEGLMVEMVESEVIPDHEICRALVNGYCKEGNADKAESLLVSFAK 564

Query: 432 -----DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
                D+ S+ +++ +Y   GN    +EL + M + G   N + C  +I  + K+ R++
Sbjct: 565 DFQFFDSESFNSLVKVYRDVGNETKLMELQDRMLKAGFLPNSLTCRYIIHGIWKSMRLN 623


>gi|15228825|ref|NP_188906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274241|sp|Q9LUJ4.1|PP248_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22670, mitochondrial; Flags: Precursor
 gi|9279685|dbj|BAB01242.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643142|gb|AEE76663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 562

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 126/552 (22%), Positives = 230/552 (41%), Gaps = 66/552 (11%)

Query: 1   MAASLSTALDVHLSIPKSDTKRPIFLTKPTRRSHPIKINISCNSKSSENVAAESPN-PET 59
           M   L  +  V  ++P+   +R   +T  T    PI             VAAESP  P  
Sbjct: 1   MLTKLRISKLVSYTLPRRIFQRRFLVTNNTAEESPI-------------VAAESPELPSW 47

Query: 60  KTLSLSEQLKPLSSTTLSPTKNDRTPLLSKPKSTWVNPTKPRRSVLSLQRQKRSTYSYNP 119
               LS +    SS+     ++   P L+     WV   K      S Q+         P
Sbjct: 48  IKDFLSNKPSSSSSSVSKDDEDFVIPSLA----NWVESQK-----FSRQQVSEGNVVKKP 98

Query: 120 RVRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTRENALLILNSL-KFWQKSYFFFNWIK 178
            V D+      LN  D + E  ++ +++     T    L +L      W ++Y FF W  
Sbjct: 99  -VEDIDKVCDFLNKKDTSHEDVVKELSKCDVVVTESLVLQVLRRFSNGWNQAYGFFIWAN 157

Query: 179 SQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNE--------------------- 217
           SQ  +      YN  +  L   R F L+ +L NEM  NE                     
Sbjct: 158 SQTGYVHSGHTYNAMVDVLGKCRNFDLMWELVNEMNKNEESKLVTLDTMSKVMRRLAKSG 217

Query: 218 -----------------IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTY 260
                            ++ D I  ++++    + N  + A E F +++ T + PD  T+
Sbjct: 218 KYNKAVDAFLEMEKSYGVKTDTIAMNSLMDALVKENSIEHAHEVFLKLFDT-IKPDARTF 276

Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
           + ++  + K+ K ++  ++ +    + + PD + ++   + + + GD+  +  +L+EM+ 
Sbjct: 277 NILIHGFCKARKFDDARAMMDLMKVTEFTPDVVTYTSFVEAYCKEGDFRRVNEMLEEMRE 336

Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380
            G  PN+V Y  ++ ++GK+ +   A  ++++M E G  PD K  ++LI I  K    KD
Sbjct: 337 NGCNPNVVTYTIVMHSLGKSKQVAEALGVYEKMKEDGCVPDAKFYSSLIHILSKTGRFKD 396

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM--KLSDYCKPDNYSYTA 438
           A E++E M       D ++YNT+++        E A RL + M  +  + C P+  +Y  
Sbjct: 397 AAEIFEDMTNQGVRRDVLVYNTMISAALHHSRDEMALRLLKRMEDEEGESCSPNVETYAP 456

Query: 439 MLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRG 498
           +L +      +     L   M +  V+I+V     LI+ L  + ++++    F  ++ +G
Sbjct: 457 LLKMCCHKKKMKLLGILLHHMVKNDVSIDVSTYILLIRGLCMSGKVEEACLFFEEAVRKG 516

Query: 499 VKPDDRLCGCLL 510
           + P D  C  L+
Sbjct: 517 MVPRDSTCKMLV 528


>gi|413933767|gb|AFW68318.1| hypothetical protein ZEAMMB73_786057 [Zea mays]
          Length = 645

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 98/371 (26%), Positives = 166/371 (44%), Gaps = 40/371 (10%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + YN  ++ L   R++  ++ L  EMV+     + +T+ST+I    R  LF+   E  
Sbjct: 216 DVVSYNAVLRGLCMARRWGHVQDLMEEMVAAGCPPNIVTFSTLIGHLCRNGLFERVHEVH 275

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP--------------- 290
            +M + G  PD   Y+ I+D   K  ++E    +  R  + G  P               
Sbjct: 276 AQMAEHGCAPDVRMYATIIDGVCKEERLEVARGILNRMPSYGLSPNVVCYNTLLKGLCSA 335

Query: 291 --------------------DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
                               D + F++L     ++G  D +  VL++M   G  P+++ Y
Sbjct: 336 DRWEEAEGLLAEMFDKDCPLDDVTFNILVDFLCQNGLVDRVIEVLEQMLEHGCMPDVITY 395

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA-RWAKDALELWERMR 389
            T++    K G    A  L   M   G  P+  + T ++K    A RW  DA EL  +M 
Sbjct: 396 TTVINGFCKEGLIDEAVMLLRSMAACGCRPNTVSYTIVLKGLCSAERWV-DAEELMSQMI 454

Query: 390 ENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNV 449
           +   P + + +NTL+N     GLVE+A  L + M L + C PD  SY+ +++  G  GN 
Sbjct: 455 QQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQM-LVNGCSPDLISYSTVIDGLGKAGNT 513

Query: 450 DNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCL 509
           D A+EL   M + G++ N +  + +   L    RI+ ++++F    D  V+ D  L   +
Sbjct: 514 DEALELLNVMVKKGMSPNTIIYSSIASALSGEGRINKVIQMFENIQDTTVRSDAVLYNAV 573

Query: 510 LSVVSLCETSE 520
           +S  SLC+  E
Sbjct: 574 IS--SLCKRGE 582



 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/306 (26%), Positives = 150/306 (49%), Gaps = 2/306 (0%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
             N + S  L P   + YN  +K L    +++  E L  EM   +  LD++T++ ++   
Sbjct: 309 ILNRMPSYGLSP-NVVCYNTLLKGLCSADRWEEAEGLLAEMFDKDCPLDDVTFNILVDFL 367

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +  L D  IE  E+M + G MPD +TY+ +++ + K G ++E + L     A G +P+ 
Sbjct: 368 CQNGLVDRVIEVLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLRSMAACGCRPNT 427

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           ++++++ K    +  +     ++ +M   G  PN V +NTL+  + K G    A  L  +
Sbjct: 428 VSYTIVLKGLCSAERWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQ 487

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M+ +G +PD  + + +I   GKA    +ALEL   M +     + I+Y+++ +  +  G 
Sbjct: 488 MLVNGCSPDLISYSTVIDGLGKAGNTDEALELLNVMVKKGMSPNTIIYSSIASALSGEGR 547

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
           + +  ++FE+++ +   + D   Y A+++     G  D AIE    M   G   N    T
Sbjct: 548 INKVIQMFENIQDTTV-RSDAVLYNAVISSLCKRGETDRAIEFLAYMVSSGCVPNESTYT 606

Query: 473 CLIQCL 478
            LI+ L
Sbjct: 607 ILIRGL 612



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 144/316 (45%), Gaps = 4/316 (1%)

Query: 189 FYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERM 248
            Y+VT+++      F+    +  ++      LD    + ++         DEA+     +
Sbjct: 148 MYHVTLEAACRASGFRGAVGVLRDLHGRGCALDVGNCNLVLQAVCDQGPVDEAVRLLRDL 207

Query: 249 YKT-GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
             + G  PD V+Y+A+L     + +   V  L E  VA+G  P+ + FS L      +G 
Sbjct: 208 LPSFGCEPDVVSYNAVLRGLCMARRWGHVQDLMEEMVAAGCPPNIVTFSTLIGHLCRNGL 267

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
           ++ +  V  +M   G  P++ +Y T+++ + K  +  +AR + + M   GL+P+      
Sbjct: 268 FERVHEVHAQMAEHGCAPDVRMYATIIDGVCKEERLEVARGILNRMPSYGLSPNVVCYNT 327

Query: 368 LIKIYGKA-RWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
           L+K    A RW ++A  L   M +   P+D + +N L++     GLV+    + E M L 
Sbjct: 328 LLKGLCSADRW-EEAEGLLAEMFDKDCPLDDVTFNILVDFLCQNGLVDRVIEVLEQM-LE 385

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
             C PD  +YT ++N +   G +D A+ L   M+  G   N +  T +++ L  A R  D
Sbjct: 386 HGCMPDVITYTTVINGFCKEGLIDEAVMLLRSMAACGCRPNTVSYTIVLKGLCSAERWVD 445

Query: 487 LVRVFGVSIDRGVKPD 502
              +    I +G  P+
Sbjct: 446 AEELMSQMIQQGCPPN 461



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/302 (22%), Positives = 138/302 (45%), Gaps = 1/302 (0%)

Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS 261
           + ++   + N M S  +  + + Y+T++      + ++EA      M+      D+VT++
Sbjct: 302 RLEVARGILNRMPSYGLSPNVVCYNTLLKGLCSADRWEEAEGLLAEMFDKDCPLDDVTFN 361

Query: 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
            ++D   ++G V+ V+ + E+ +  G  PD I ++ +   F + G  D    +L+ M + 
Sbjct: 362 ILVDFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLRSMAAC 421

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
           G +PN V Y  +L+ +  A +   A  L  +M++ G  P+  T   LI    K    + A
Sbjct: 422 GCRPNTVSYTIVLKGLCSAERWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQA 481

Query: 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
           +EL ++M  N    D I Y+T+++     G  +EA  L   M +     P+   Y+++ +
Sbjct: 482 IELLKQMLVNGCSPDLISYSTVIDGLGKAGNTDEALELLNVM-VKKGMSPNTIIYSSIAS 540

Query: 442 IYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
                G ++  I++FE + +  V  + +    +I  L K    D  +      +  G  P
Sbjct: 541 ALSGEGRINKVIQMFENIQDTTVRSDAVLYNAVISSLCKRGETDRAIEFLAYMVSSGCVP 600

Query: 502 DD 503
           ++
Sbjct: 601 NE 602



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 100/202 (49%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
           T+ Y + +K L    ++   E+L ++M+      + +T++T+I    +  L ++AIE  +
Sbjct: 427 TVSYTIVLKGLCSAERWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLK 486

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
           +M   G  PD ++YS ++D   K+G  +E L L    V  G  P+ I +S +       G
Sbjct: 487 QMLVNGCSPDLISYSTVIDGLGKAGNTDEALELLNVMVKKGMSPNTIIYSSIASALSGEG 546

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
             + +  + + ++   V+ + V+YN ++ ++ K G+   A      MV SG  P+E T T
Sbjct: 547 RINKVIQMFENIQDTTVRSDAVLYNAVISSLCKRGETDRAIEFLAYMVSSGCVPNESTYT 606

Query: 367 ALIKIYGKARWAKDALELWERM 388
            LI+      + K+A E+   +
Sbjct: 607 ILIRGLASEGFVKEAQEILTEL 628



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/275 (20%), Positives = 117/275 (42%), Gaps = 35/275 (12%)

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI- 242
           P++ + +N+ +  L        + ++  +M+ +    D ITY+T+I    +  L DEA+ 
Sbjct: 354 PLDDVTFNILVDFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVM 413

Query: 243 ----------------------------------EWFERMYKTGLMPDEVTYSAILDVYA 268
                                             E   +M + G  P+ VT++ +++   
Sbjct: 414 LLRSMAACGCRPNTVSYTIVLKGLCSAERWVDAEELMSQMIQQGCPPNPVTFNTLINFLC 473

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           K G VE+ + L ++ + +G  PD I++S +    G++G+ D    +L  M   G+ PN +
Sbjct: 474 KKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGNTDEALELLNVMVKKGMSPNTI 533

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
           +Y+++  A+   G+      +F+ + ++ +  D     A+I    K      A+E    M
Sbjct: 534 IYSSIASALSGEGRINKVIQMFENIQDTTVRSDAVLYNAVISSLCKRGETDRAIEFLAYM 593

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
             +    +   Y  L+   A  G V+EA+ +  ++
Sbjct: 594 VSSGCVPNESTYTILIRGLASEGFVKEAQEILTEL 628



 Score = 62.8 bits (151), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 78/186 (41%)

Query: 320 SLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAK 379
           S+ V PN   Y  L+ A+   G+   A ++ D+M   G  P        ++   +A   +
Sbjct: 104 SVPVAPNAYTYFPLVRALCARGRIADALAVLDDMARRGCAPTPPMYHVTLEAACRASGFR 163

Query: 380 DALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAM 439
            A+ +   +      +D    N +L    D G V+EA RL  D+  S  C+PD  SY A+
Sbjct: 164 GAVGVLRDLHGRGCALDVGNCNLVLQAVCDQGPVDEAVRLLRDLLPSFGCEPDVVSYNAV 223

Query: 440 LNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGV 499
           L          +  +L EEM   G   N++  + LI  L +    + +  V     + G 
Sbjct: 224 LRGLCMARRWGHVQDLMEEMVAAGCPPNIVTFSTLIGHLCRNGLFERVHEVHAQMAEHGC 283

Query: 500 KPDDRL 505
            PD R+
Sbjct: 284 APDVRM 289



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 69/319 (21%), Positives = 116/319 (36%), Gaps = 72/319 (22%)

Query: 255 PDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI-----------------AFSV 297
           P+  TY  ++      G++ + L++ +     G  P P                  A  V
Sbjct: 109 PNAYTYFPLVRALCARGRIADALAVLDDMARRGCAPTPPMYHVTLEAACRASGFRGAVGV 168

Query: 298 LGKMFGESGDYD-------------------GIRYVLQEMKSLGVQPNLVVYNTLLEAMG 338
           L  + G     D                    +R +   + S G +P++V YN +L  + 
Sbjct: 169 LRDLHGRGCALDVGNCNLVLQAVCDQGPVDEAVRLLRDLLPSFGCEPDVVSYNAVLRGLC 228

Query: 339 KAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE-------- 390
            A + G  + L +EMV +G  P+  T + LI    +    +   E+  +M E        
Sbjct: 229 MARRWGHVQDLMEEMVAAGCPPNIVTFSTLIGHLCRNGLFERVHEVHAQMAEHGCAPDVR 288

Query: 391 ----------------------NKWPM-----DFILYNTLLNMCADIGLVEEAERLFEDM 423
                                 N+ P      + + YNTLL         EEAE L  +M
Sbjct: 289 MYATIIDGVCKEERLEVARGILNRMPSYGLSPNVVCYNTLLKGLCSADRWEEAEGLLAEM 348

Query: 424 KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483
              D C  D+ ++  +++     G VD  IE+ E+M E G   +V+  T +I    K   
Sbjct: 349 FDKD-CPLDDVTFNILVDFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVINGFCKEGL 407

Query: 484 IDDLVRVFGVSIDRGVKPD 502
           ID+ V +       G +P+
Sbjct: 408 IDEAVMLLRSMAACGCRPN 426


>gi|255661146|gb|ACU25742.1| pentatricopeptide repeat-containing protein [Verbena hispida]
          Length = 426

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/283 (31%), Positives = 146/283 (51%), Gaps = 7/283 (2%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D  TYST+IT   +  LFD A+ W ++M +  +  D V YS ++++  K     + +S++
Sbjct: 8   DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
            R   SG+ PD +A++ +  +FG++  +   R ++ EM++ GV PN   Y+TLL    + 
Sbjct: 68  SRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVEN 127

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
            K   A S+F EM E     D  T   +I +YG+   AK+A +L+  MR+     + + Y
Sbjct: 128 KKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSY 187

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           NTLL +  D  L  EA  LF  M+  +  + +  +Y +M+ IYG     + A  L +EM 
Sbjct: 188 NTLLRVYGDAELFGEAIHLFRLMQRKN-IEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 246

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVF------GVSIDR 497
             G+  N +  + +I   GK  ++D    +F      GV ID+
Sbjct: 247 NRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQ 289



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/366 (22%), Positives = 169/366 (46%), Gaps = 6/366 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K     P + + YN  +      + F+    L +EM +  +  +  +YS
Sbjct: 60  YSKAISIFSRLKRSGFTP-DLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYS 118

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY + G  +E   L+      
Sbjct: 119 TLLTMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 178

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   ++ N+V YN+++   GK  +   A
Sbjct: 179 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKA 238

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R +   +D +LY T++  
Sbjct: 239 NNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVA 298

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K     +PDN      ++I    G ++ A  +F +  + G   
Sbjct: 299 YERAGLVAHAKRLLHELK-----RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVK 353

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           ++     +I    K ++  ++V VF      G  PD  +   +L+        +    V 
Sbjct: 354 DITVFERMIHLFSKYKKYGNVVEVFNKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVY 413

Query: 527 TCLQQA 532
             +Q+ 
Sbjct: 414 MEMQEV 419



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/270 (24%), Positives = 138/270 (51%), Gaps = 1/270 (0%)

Query: 212 EMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG 271
           +M  + +  D + YS +I  +++   + +AI  F R+ ++G  PD V Y+A+++V+ K+ 
Sbjct: 34  KMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAK 93

Query: 272 KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYN 331
              E  SL      +G  P+  ++S L  M+ E+  +     +  EM+ +    +L   N
Sbjct: 94  LFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSIFAEMREIKCLLDLTTCN 153

Query: 332 TLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN 391
            +++  G+ G    A  LF  M + G+ P+  +   L+++YG A    +A+ L+  M+  
Sbjct: 154 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 213

Query: 392 KWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDN 451
               + + YN+++ +       E+A  L ++M+ +   +P++ +Y+ +++I+G  G +D 
Sbjct: 214 NIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ-NRGIEPNSITYSTIISIWGKVGKLDR 272

Query: 452 AIELFEEMSELGVAINVMGCTCLIQCLGKA 481
           A  LF+++   GV I+ +    +I    +A
Sbjct: 273 AAMLFQKLRSSGVDIDQVLYQTMIVAYERA 302



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 125/261 (47%), Gaps = 1/261 (0%)

Query: 252 GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGI 311
            L PD  TYS ++  + K G  +  LS  ++        D + +S L ++  +  DY   
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 312 RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371
             +   +K  G  P+LV YN ++   GKA     ARSL  EM  +G+TP+  + + L+ +
Sbjct: 64  ISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTM 123

Query: 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
           Y + +   +AL ++  MRE K  +D    N ++++   +G+ +EA++LF  M+     +P
Sbjct: 124 YVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG-IEP 182

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           +  SY  +L +YG       AI LF  M    +  NV+    ++   GK    +    + 
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 242

Query: 492 GVSIDRGVKPDDRLCGCLLSV 512
               +RG++P+      ++S+
Sbjct: 243 QEMQNRGIEPNSITYSTIISI 263



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 51/242 (21%), Positives = 105/242 (43%), Gaps = 5/242 (2%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           P+  +    L +    + + ++   F  ++ +N+     + YN  M       + +    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNI-EQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  EM +  IE ++ITYSTII+   +    D A   F+++  +G+  D+V Y  ++  Y 
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYE 300

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           ++G V       +R +    +PD I   +   +   +G  +   +V ++    G   ++ 
Sbjct: 301 RAGLVAHA----KRLLHELKRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDIT 356

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
           V+  ++    K  K G    +F++M   G  PD   +  ++  YGK      A +++  M
Sbjct: 357 VFERMIHLFSKYKKYGNVVEVFNKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVYMEM 416

Query: 389 RE 390
           +E
Sbjct: 417 QE 418



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 87/191 (45%), Gaps = 3/191 (1%)

Query: 355 ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
           E  L+PD  T + LI  +GK      AL   ++M +++ P D +LY+ L+ +   +    
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
           +A  +F  +K S +  PD  +Y AM+N++G       A  L  EM   GV  N    + L
Sbjct: 62  KAISIFSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN- 533
           +    + ++  + + +F    +     D   C  ++ V      +++  K+   +++   
Sbjct: 121 LTMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180

Query: 534 -PKLVAFLNLI 543
            P +V++  L+
Sbjct: 181 EPNVVSYNTLL 191


>gi|168024876|ref|XP_001764961.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683770|gb|EDQ70177.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 743

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 167/345 (48%), Gaps = 3/345 (0%)

Query: 190 YNVTMKSLRFGRQFQLIEQ-LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERM 248
           YN+  K L    ++  I+  L  +M  +E E D  T++T+I  A + N  D A   F+ M
Sbjct: 14  YNIMFKILGARHEWSKIDDFLGGKMQEDECEPDQYTFNTLIMSASKANYVDYATITFQLM 73

Query: 249 YKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY 308
            +TG++P  +TYS +L +Y +  KV E  S++   + SG +   +A+SV+  ++   G +
Sbjct: 74  LQTGVLPSILTYSMMLLLYQRHRKVAEAESVFSHMLNSGVQA-VVAYSVMIALYNREGLF 132

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
           +    ++ EM+   V P+   +   L   G+ GK   A  + D + ESG++       ++
Sbjct: 133 EKSEQIVTEMRRNNVTPDRDNWLKQLNTYGQQGKIEEAERIMDTVEESGMSLGLVGYNSM 192

Query: 369 IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428
           I  YGKA     A  L E+MRE     D I Y+ ++  C  +G ++EA   F +MK  + 
Sbjct: 193 ITAYGKACLYDKAARLVEKMREEDLVPDSITYSCMIGACGRVGKLKEALSWFAEMKRLE- 251

Query: 429 CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLV 488
            KP + ++  ++++YG   +V+  + +  EM + G   +       ++   +A  I D+ 
Sbjct: 252 IKPASSNFNTLISLYGKAKDVEGIVRVITEMKKYGCKPDWQTLDAAVRAYDRAGLIKDVT 311

Query: 489 RVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN 533
            +  +  D G   +    G LL V   C   ++  ++   +++A 
Sbjct: 312 EILNLLRDAGWVEETGSYGTLLHVYLKCNLPKEALRIFLAMRKAG 356



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 89/408 (21%), Positives = 189/408 (46%), Gaps = 8/408 (1%)

Query: 199 FGRQFQL--IEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPD 256
           +G+Q ++   E++ + +  + + L  + Y+++IT   +  L+D+A    E+M +  L+PD
Sbjct: 161 YGQQGKIEEAERIMDTVEESGMSLGLVGYNSMITAYGKACLYDKAARLVEKMREEDLVPD 220

Query: 257 EVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQ 316
            +TYS ++    + GK++E LS +        KP    F+ L  ++G++ D +GI  V+ 
Sbjct: 221 SITYSCMIGACGRVGKLKEALSWFAEMKRLEIKPASSNFNTLISLYGKAKDVEGIVRVIT 280

Query: 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
           EMK  G +P+    +  + A  +AG       + + + ++G   +  +   L+ +Y K  
Sbjct: 281 EMKKYGCKPDWQTLDAAVRAYDRAGLIKDVTEILNLLRDAGWVEETGSYGTLLHVYLKCN 340

Query: 377 WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY 436
             K+AL ++  MR+        +  +L+    D  + + A+ +F++M+++    P   S 
Sbjct: 341 LPKEALRIFLAMRKAGMAPKEYMCRSLICTFRDAEMFDGAKSVFKEMQVAG-VTPSLESS 399

Query: 437 TAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496
             M+ +YG  G+V  A  LF  +      +++     +I    +    +  ++V+ +  +
Sbjct: 400 CTMIYVYGMNGDVKEAEGLFHSLRSSVKRLDIFAYNVMINVYMRCDMPEGAIKVYKLMEE 459

Query: 497 RGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFL-NLIEDNSTGF---EN 552
             + PD      +L +   C       ++   L+ ++ +L   + N + +    F   E 
Sbjct: 460 DHLLPDAYTYHSMLRMCQKCNLPAQAEEIYWRLRNSDVELDEVMCNCVLNTCAKFLPLEE 519

Query: 553 IKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLYG 600
           + + F+ +I    V     F N +ID+     + ERAH+ L L   +G
Sbjct: 520 MHKLFQEMIDVGYVPYNITF-NVMIDLYGKAGMPERAHKALKLAQQFG 566



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 132/270 (48%), Gaps = 4/270 (1%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D  TY +++   ++CNL  +A E + R+  + +  DEV  + +L+  AK   +EE+  L+
Sbjct: 465 DAYTYHSMLRMCQKCNLPAQAEEIYWRLRNSDVELDEVMCNCVLNTCAKFLPLEEMHKLF 524

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
           +  +  G+ P  I F+V+  ++G++G  +     L+  +  G   + + ++TL+ A  K 
Sbjct: 525 QEMIDVGYVPYNITFNVMIDLYGKAGMPERAHKALKLAQQFG-SADKISFSTLVHAYAKK 583

Query: 341 GK-PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
              P +  +L+ EM  +G     +   +++  YGKA   +   ++  RM  +   MD   
Sbjct: 584 QDFPNMEAALW-EMQNAGYGSSLEAYNSILDAYGKAGQMEKVSDVLARMENSGMRMDLAS 642

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           YN L+N      ++ E E LF  M+  +   PD ++Y  ++  YG     D A+  F+ M
Sbjct: 643 YNILINTYGKNYMIAEMETLFRTMQ-EEGVVPDRWTYNTIIRTYGFADYPDRAVYWFKAM 701

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVR 489
            + G++ + +    L+    +A  ID+  R
Sbjct: 702 QDAGISPDRVTYMILVSTFERAGNIDEAAR 731



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 123/258 (47%), Gaps = 4/258 (1%)

Query: 207 EQLANEMVSNEIELDNITYSTII-TCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
           E++   + ++++ELD +  + ++ TCAK   L +E  + F+ M   G +P  +T++ ++D
Sbjct: 486 EEIYWRLRNSDVELDEVMCNCVLNTCAKFLPL-EEMHKLFQEMIDVGYVPYNITFNVMID 544

Query: 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325
           +Y K+G  E      +     G   D I+FS L   + +  D+  +   L EM++ G   
Sbjct: 545 LYGKAGMPERAHKALKLAQQFG-SADKISFSTLVHAYAKKQDFPNMEAALWEMQNAGYGS 603

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
           +L  YN++L+A GKAG+      +   M  SG+  D  +   LI  YGK     +   L+
Sbjct: 604 SLEAYNSILDAYGKAGQMEKVSDVLARMENSGMRMDLASYNILINTYGKNYMIAEMETLF 663

Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445
             M+E     D   YNT++         + A   F+ M+ +    PD  +Y  +++ +  
Sbjct: 664 RTMQEEGVVPDRWTYNTIIRTYGFADYPDRAVYWFKAMQDAG-ISPDRVTYMILVSTFER 722

Query: 446 GGNVDNAIELFEEMSELG 463
            GN+D A      MS+ G
Sbjct: 723 AGNIDEAARWCLRMSQAG 740



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 87/410 (21%), Positives = 168/410 (40%), Gaps = 41/410 (10%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           + YS +I    R  LF+++ +    M +  + PD   +   L+ Y + GK+EE   + + 
Sbjct: 117 VAYSVMIALYNREGLFEKSEQIVTEMRRNNVTPDRDNWLKQLNTYGQQGKIEEAERIMDT 176

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
              SG     + ++ +   +G++  YD    ++++M+   + P+ + Y+ ++ A G+ GK
Sbjct: 177 VEESGMSLGLVGYNSMITAYGKACLYDKAARLVEKMREEDLVPDSITYSCMIGACGRVGK 236

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR--------------------WA---- 378
              A S F EM    + P       LI +YGKA+                    W     
Sbjct: 237 LKEALSWFAEMKRLEIKPASSNFNTLISLYGKAKDVEGIVRVITEMKKYGCKPDWQTLDA 296

Query: 379 -----------KDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
                      KD  E+   +R+  W  +   Y TLL++     L +EA R+F  M+ + 
Sbjct: 297 AVRAYDRAGLIKDVTEILNLLRDAGWVEETGSYGTLLHVYLKCNLPKEALRIFLAMRKAG 356

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
              P  Y   +++  +      D A  +F+EM   GV  ++     +I   G    + + 
Sbjct: 357 MA-PKEYMCRSLICTFRDAEMFDGAKSVFKEMQVAGVTPSLESSCTMIYVYGMNGDVKEA 415

Query: 488 VRVFGVSIDRGVKPDDRLC-GCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAFLNLIE 544
             +F  S+   VK  D      +++V   C+  E   KV   +++ +  P    + +++ 
Sbjct: 416 EGLFH-SLRSSVKRLDIFAYNVMINVYMRCDMPEGAIKVYKLMEEDHLLPDAYTYHSMLR 474

Query: 545 D-NSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELL 593
                      EE    +++++V+     CNC+++ C      E  H+L 
Sbjct: 475 MCQKCNLPAQAEEIYWRLRNSDVELDEVMCNCVLNTCAKFLPLEEMHKLF 524



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 130/297 (43%), Gaps = 4/297 (1%)

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
           E L + + S+   LD   Y+ +I    RC++ + AI+ ++ M +  L+PD  TY ++L +
Sbjct: 416 EGLFHSLRSSVKRLDIFAYNVMINVYMRCDMPEGAIKVYKLMEEDHLLPDAYTYHSMLRM 475

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
             K     +   +Y R   S  + D +  + +     +    + +  + QEM  +G  P 
Sbjct: 476 CQKCNLPAQAEEIYWRLRNSDVELDEVMCNCVLNTCAKFLPLEEMHKLFQEMIDVGYVPY 535

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR-WAKDALELW 385
            + +N +++  GKAG P  A        + G + D+ + + L+  Y K + +      LW
Sbjct: 536 NITFNVMIDLYGKAGMPERAHKALKLAQQFG-SADKISFSTLVHAYAKKQDFPNMEAALW 594

Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445
           E M+   +      YN++L+     G +E+   +   M+ S   + D  SY  ++N YG 
Sbjct: 595 E-MQNAGYGSSLEAYNSILDAYGKAGQMEKVSDVLARMENSG-MRMDLASYNILINTYGK 652

Query: 446 GGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
              +     LF  M E GV  +      +I+  G A   D  V  F    D G+ PD
Sbjct: 653 NYMIAEMETLFRTMQEEGVVPDRWTYNTIIRTYGFADYPDRAVYWFKAMQDAGISPD 709



 Score = 48.1 bits (113), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 4/93 (4%)

Query: 185 METIFYNVTMKSLRFGRQFQL--IEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
           M+   YN+ + +  +G+ + +  +E L   M    +  D  TY+TII      +  D A+
Sbjct: 638 MDLASYNILINT--YGKNYMIAEMETLFRTMQEEGVVPDRWTYNTIIRTYGFADYPDRAV 695

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEE 275
            WF+ M   G+ PD VTY  ++  + ++G ++E
Sbjct: 696 YWFKAMQDAGISPDRVTYMILVSTFERAGNIDE 728



 Score = 41.6 bits (96), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 24/120 (20%), Positives = 54/120 (45%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN  + +     Q + +  +   M ++ + +D  +Y+ +I    +  +  E    F  M 
Sbjct: 608 YNSILDAYGKAGQMEKVSDVLARMENSGMRMDLASYNILINTYGKNYMIAEMETLFRTMQ 667

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
           + G++PD  TY+ I+  Y  +   +  +  ++    +G  PD + + +L   F  +G+ D
Sbjct: 668 EEGVVPDRWTYNTIIRTYGFADYPDRAVYWFKAMQDAGISPDRVTYMILVSTFERAGNID 727


>gi|299471515|emb|CBN80001.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 687

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/354 (25%), Positives = 162/354 (45%), Gaps = 2/354 (0%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           P+  T  +A+      + W+++      +  Q  FP  T  YN  + +   G ++     
Sbjct: 215 PNLITYNSAIGACAKGRRWEEAMDLLEEVIEQG-FPPSTRTYNPVIDACAKGGRWLEAMD 273

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  +M++N+I  D I+YS++I    R   + EA++  E+M   G+ P+ ++Y++ +D  A
Sbjct: 274 LLGQMLTNDIPADVISYSSVIAACGRGRRWKEAMDLLEQMRTQGVSPNVISYNSAIDACA 333

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           K  + +E L L       G  P  I+++        +G +     +L+EM + G+ PN +
Sbjct: 334 KGDRWKEALDLLREMTTVGLVPTVISYNSATAACAVNGRWVEALELLKEMPAQGIAPNTI 393

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            YN+ L+A  K G+   A  L   M   G  PD  +  + I   G+ +  + A+EL   M
Sbjct: 394 SYNSALDACAKGGQWEKAVKLLRGMSTVGSDPDIISFNSAIDACGRGQQWETAVELLREM 453

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
                  + I YN+ +  C      +EA  LF +M       P+  +Y +M++    G  
Sbjct: 454 PTAGLTPNVITYNSAIEACGRSARWQEAMGLFREMPTRGL-SPNVVTYNSMIDACAKGEQ 512

Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            + A++L   M   GVA +V+     I+  GK  + +  +++      RG KPD
Sbjct: 513 WELAVQLLTGMPARGVAPDVISYNSAIEACGKGEQWELALQLLKGMPTRGPKPD 566



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 97/392 (24%), Positives = 176/392 (44%), Gaps = 8/392 (2%)

Query: 113 STYSYNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTRENALLI-LNSLKFWQKSY 171
           ST +YNP +       R L   D   +       +IP      ++++      + W+++ 
Sbjct: 251 STRTYNPVIDACAKGGRWLEAMDLLGQML---TNDIPADVISYSSVIAACGRGRRWKEAM 307

Query: 172 FFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITC 231
                +++Q + P   I YN  + +   G +++    L  EM +  +    I+Y++    
Sbjct: 308 DLLEQMRTQGVSP-NVISYNSAIDACAKGDRWKEALDLLREMTTVGLVPTVISYNSATAA 366

Query: 232 AKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS-GWKP 290
                 + EA+E  + M   G+ P+ ++Y++ LD  AK G+ E+ + L  RG+++ G  P
Sbjct: 367 CAVNGRWVEALELLKEMPAQGIAPNTISYNSALDACAKGGQWEKAVKLL-RGMSTVGSDP 425

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
           D I+F+      G    ++    +L+EM + G+ PN++ YN+ +EA G++ +   A  LF
Sbjct: 426 DIISFNSAIDACGRGQQWETAVELLREMPTAGLTPNVITYNSAIEACGRSARWQEAMGLF 485

Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
            EM   GL+P+  T  ++I    K    + A++L   M       D I YN+ +  C   
Sbjct: 486 REMPTRGLSPNVVTYNSMIDACAKGEQWELAVQLLTGMPARGVAPDVISYNSAIEACGKG 545

Query: 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG 470
              E A +L + M      KPD  SY + +      G    A+ L ++M+ +G+  N + 
Sbjct: 546 EQWELALQLLKGMPTRGP-KPDIISYNSAVTACAKSGRWREALGLLKDMATVGLTPNTVS 604

Query: 471 CTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
               I   GK  + D  VR+       G  P+
Sbjct: 605 YGAAIHACGKGEQWDVAVRILKEMQTHGATPN 636



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 100/411 (24%), Positives = 187/411 (45%), Gaps = 18/411 (4%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIF-----YNVTMKSLRFGRQF 203
           P   T  +A+   +    W+++        +Q + P E I      YN  + +   G ++
Sbjct: 143 PDVVTYNSAIAACSKGGRWKEAMDLL----TQMVAPTEGITPDVVTYNSAIAACSNGGRW 198

Query: 204 QLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAI 263
           +    L  +MV+  +  + ITY++ I    +   ++EA++  E + + G  P   TY+ +
Sbjct: 199 KEAMDLLEQMVAQGVPPNLITYNSAIGACAKGRRWEEAMDLLEEVIEQGFPPSTRTYNPV 258

Query: 264 LDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGV 323
           +D  AK G+  E + L  + + +    D I++S +    G    +     +L++M++ GV
Sbjct: 259 IDACAKGGRWLEAMDLLGQMLTNDIPADVISYSSVIAACGRGRRWKEAMDLLEQMRTQGV 318

Query: 324 QPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTP---DEKTLTALIKIYGKARWAKD 380
            PN++ YN+ ++A  K  +   A  L  EM   GL P      + TA   + G  RW  +
Sbjct: 319 SPNVISYNSAIDACAKGDRWKEALDLLREMTTVGLVPTVISYNSATAACAVNG--RWV-E 375

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
           ALEL + M       + I YN+ L+ CA  G  E+A +L   M       PD  S+ + +
Sbjct: 376 ALELLKEMPAQGIAPNTISYNSALDACAKGGQWEKAVKLLRGMSTVGS-DPDIISFNSAI 434

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
           +  G G   + A+EL  EM   G+  NV+     I+  G++ R  + + +F     RG+ 
Sbjct: 435 DACGRGQQWETAVELLREMPTAGLTPNVITYNSAIEACGRSARWQEAMGLFREMPTRGLS 494

Query: 501 PDDRLCGCLLSVVSLCETSEDVGKVITCL--QQANPKLVAFLNLIEDNSTG 549
           P+      ++   +  E  E   +++T +  +   P ++++ + IE    G
Sbjct: 495 PNVVTYNSMIDACAKGEQWELAVQLLTGMPARGVAPDVISYNSAIEACGKG 545



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 98/429 (22%), Positives = 184/429 (42%), Gaps = 16/429 (3%)

Query: 185 METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEW 244
           ++T  YN+ + +   GRQ+    +L  EM +  +  D +TY++ I    +   + EA++ 
Sbjct: 108 LDTTSYNIAIAACSNGRQWATAVRLLREMPTEGVTPDVVTYNSAIAACSKGGRWKEAMDL 167

Query: 245 FERMYK--TGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
             +M     G+ PD VTY++ +   +  G+ +E + L E+ VA G  P+ I ++      
Sbjct: 168 LTQMVAPTEGITPDVVTYNSAIAACSNGGRWKEAMDLLEQMVAQGVPPNLITYNSAIGAC 227

Query: 303 GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
            +   ++    +L+E+   G  P+   YN +++A  K G+   A  L  +M+ + +  D 
Sbjct: 228 AKGRRWEEAMDLLEEVIEQGFPPSTRTYNPVIDACAKGGRWLEAMDLLGQMLTNDIPADV 287

Query: 363 KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED 422
            + +++I   G+ R  K+A++L E+MR      + I YN+ ++ CA     +EA  L  +
Sbjct: 288 ISYSSVIAACGRGRRWKEAMDLLEQMRTQGVSPNVISYNSAIDACAKGDRWKEALDLLRE 347

Query: 423 MKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKAR 482
           M       P   SY +        G    A+EL +EM   G+A N +     +    K  
Sbjct: 348 MTTVGLV-PTVISYNSATAACAVNGRWVEALELLKEMPAQGIAPNTISYNSALDACAKGG 406

Query: 483 RIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQA-----NPKLV 537
           + +  V++       G  PD        S +  C   +     +  L++       P ++
Sbjct: 407 QWEKAVKLLRGMSTVGSDPD---IISFNSAIDACGRGQQWETAVELLREMPTAGLTPNVI 463

Query: 538 AFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFC---NCLIDICRNRNLNERAHELLY 594
            + + IE  + G     +E   + ++       P     N +ID C      E A +LL 
Sbjct: 464 TYNSAIE--ACGRSARWQEAMGLFREMPTRGLSPNVVTYNSMIDACAKGEQWELAVQLLT 521

Query: 595 LGTLYGLYP 603
                G+ P
Sbjct: 522 GMPARGVAP 530



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 76/308 (24%), Positives = 145/308 (47%), Gaps = 8/308 (2%)

Query: 142 LRAITEIPHQPTRENALLILNSLKF------WQKSYFFFNWIKSQNLFPMETIFYNVTMK 195
           L  + E+P Q    N +   ++L        W+K+      + +    P + I +N  + 
Sbjct: 377 LELLKEMPAQGIAPNTISYNSALDACAKGGQWEKAVKLLRGMSTVGSDP-DIISFNSAID 435

Query: 196 SLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMP 255
           +   G+Q++   +L  EM +  +  + ITY++ I    R   + EA+  F  M   GL P
Sbjct: 436 ACGRGQQWETAVELLREMPTAGLTPNVITYNSAIEACGRSARWQEAMGLFREMPTRGLSP 495

Query: 256 DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVL 315
           + VTY++++D  AK  + E  + L     A G  PD I+++   +  G+   ++    +L
Sbjct: 496 NVVTYNSMIDACAKGEQWELAVQLLTGMPARGVAPDVISYNSAIEACGKGEQWELALQLL 555

Query: 316 QEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA 375
           + M + G +P+++ YN+ + A  K+G+   A  L  +M   GLTP+  +  A I   GK 
Sbjct: 556 KGMPTRGPKPDIISYNSAVTACAKSGRWREALGLLKDMATVGLTPNTVSYGAAIHACGKG 615

Query: 376 RWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYS 435
                A+ + + M+ +    + I Y+  ++ CA  G  +EA  L  D++      PD  +
Sbjct: 616 EQWDVAVRILKEMQTHGATPNLITYSAAIDACAKQGRWKEAVDLLTDLRRQGL-TPDAQT 674

Query: 436 YTAMLNIY 443
           Y  +++ +
Sbjct: 675 YLTVISAF 682



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 131/284 (46%), Gaps = 8/284 (2%)

Query: 192 VTMKSLRF---GRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERM 248
           V +KS+     GR ++      +E   +   LD  +Y+  I        +  A+     M
Sbjct: 77  VKLKSILLEAKGRDWRTALAALDEFKISGGSLDTTSYNIAIAACSNGRQWATAVRLLREM 136

Query: 249 YKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVA--SGWKPDPIAFSVLGKMFGESG 306
              G+ PD VTY++ +   +K G+ +E + L  + VA   G  PD + ++         G
Sbjct: 137 PTEGVTPDVVTYNSAIAACSKGGRWKEAMDLLTQMVAPTEGITPDVVTYNSAIAACSNGG 196

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
            +     +L++M + GV PNL+ YN+ + A  K  +   A  L +E++E G  P  +T  
Sbjct: 197 RWKEAMDLLEQMVAQGVPPNLITYNSAIGACAKGRRWEEAMDLLEEVIEQGFPPSTRTYN 256

Query: 367 ALIKIYGK-ARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
            +I    K  RW  +A++L  +M  N  P D I Y++++  C      +EA  L E M+ 
Sbjct: 257 PVIDACAKGGRWL-EAMDLLGQMLTNDIPADVISYSSVIAACGRGRRWKEAMDLLEQMR- 314

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVM 469
           +    P+  SY + ++    G     A++L  EM+ +G+   V+
Sbjct: 315 TQGVSPNVISYNSAIDACAKGDRWKEALDLLREMTTVGLVPTVI 358



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 80/188 (42%), Gaps = 5/188 (2%)

Query: 320 SLGVQPNLVVY--NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARW 377
           S G +P  +V   + LLEA G+  +  LA    DE   SG + D  +    I      R 
Sbjct: 68  SRGGKPKSLVKLKSILLEAKGRDWRTALA--ALDEFKISGGSLDTTSYNIAIAACSNGRQ 125

Query: 378 AKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM-KLSDYCKPDNYSY 436
              A+ L   M       D + YN+ +  C+  G  +EA  L   M   ++   PD  +Y
Sbjct: 126 WATAVRLLREMPTEGVTPDVVTYNSAIAACSKGGRWKEAMDLLTQMVAPTEGITPDVVTY 185

Query: 437 TAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496
            + +    +GG    A++L E+M   GV  N++     I    K RR ++ + +    I+
Sbjct: 186 NSAIAACSNGGRWKEAMDLLEQMVAQGVPPNLITYNSAIGACAKGRRWEEAMDLLEEVIE 245

Query: 497 RGVKPDDR 504
           +G  P  R
Sbjct: 246 QGFPPSTR 253



 Score = 43.5 bits (101), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 68/176 (38%), Gaps = 36/176 (20%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           W+ +      + ++ + P + I YN  +++   G Q++L  QL   M +   + D I+Y+
Sbjct: 513 WELAVQLLTGMPARGVAP-DVISYNSAIEACGKGEQWELALQLLKGMPTRGPKPDIISYN 571

Query: 227 TIIT-CAK----------------------------------RCNLFDEAIEWFERMYKT 251
           + +T CAK                                  +   +D A+   + M   
Sbjct: 572 SAVTACAKSGRWREALGLLKDMATVGLTPNTVSYGAAIHACGKGEQWDVAVRILKEMQTH 631

Query: 252 GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           G  P+ +TYSA +D  AK G+ +E + L       G  PD   +  +   F    D
Sbjct: 632 GATPNLITYSAAIDACAKQGRWKEAVDLLTDLRRQGLTPDAQTYLTVISAFQRCSD 687


>gi|255661160|gb|ACU25749.1| pentatricopeptide repeat-containing protein [Glandularia araucana]
          Length = 426

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/283 (31%), Positives = 146/283 (51%), Gaps = 7/283 (2%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D  TYST+IT   +  LFD A+ W ++M +  +  D V YS ++++  K     + +S++
Sbjct: 8   DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
            R   SG+ PD +A++ +  +FG++  +   R ++ EM++ GV PN   Y+TLL    + 
Sbjct: 68  SRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVEN 127

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
            K   A S+F EM E     D  T   +I +YG+   AK+A +L+  MR+     + + Y
Sbjct: 128 KKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSY 187

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           NTLL +  D  L  EA  LF  M+  +  + +  +Y +M+ IYG     + A  L +EM 
Sbjct: 188 NTLLRVYGDAELFGEAIHLFRLMQRKN-IEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 246

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVF------GVSIDR 497
             G+  N +  + +I   GK  ++D    +F      GV ID+
Sbjct: 247 NRGIEPNSITYSTIISIWGKVGKLDKAAMLFQKLRSSGVDIDQ 289



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 81/366 (22%), Positives = 169/366 (46%), Gaps = 6/366 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K     P + + YN  +      + F+    L +EM +  +  +  +YS
Sbjct: 60  YSKAISIFSRLKRSGFTP-DLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYS 118

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY + G  +E   L+      
Sbjct: 119 TLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 178

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   ++ N+V YN+++   GK  +   A
Sbjct: 179 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKA 238

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R +   +D +LY T++  
Sbjct: 239 NNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDKAAMLFQKLRSSGVDIDQVLYQTMIVA 298

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K     +PDN      ++I    G ++ A  +F +  + G   
Sbjct: 299 YERAGLVAHAKRLLHELK-----RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVK 353

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           ++     +I    K ++  ++V VF      G  P+  +   +L+        +    V 
Sbjct: 354 DITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPESNVIALVLNAYGKLHEFDKANDVY 413

Query: 527 TCLQQA 532
             +Q+ 
Sbjct: 414 MEMQEV 419



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 138/271 (50%), Gaps = 1/271 (0%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
            +M  + +  D + YS +I  +++   + +AI  F R+ ++G  PD V Y+A+++V+ K+
Sbjct: 33  QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKA 92

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
               E  SL      +G  P+  ++S L  M+ E+  +     V  EM+ +    +L   
Sbjct: 93  KLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTC 152

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
           N +++  G+ G    A  LF  M + G+ P+  +   L+++YG A    +A+ L+  M+ 
Sbjct: 153 NIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR 212

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
                + + YN+++ +       E+A  L ++M+ +   +P++ +Y+ +++I+G  G +D
Sbjct: 213 KNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ-NRGIEPNSITYSTIISIWGKVGKLD 271

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
            A  LF+++   GV I+ +    +I    +A
Sbjct: 272 KAAMLFQKLRSSGVDIDQVLYQTMIVAYERA 302



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 125/261 (47%), Gaps = 1/261 (0%)

Query: 252 GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGI 311
            L PD  TYS ++  + K G  +  LS  ++        D + +S L ++  +  DY   
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 312 RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371
             +   +K  G  P+LV YN ++   GKA     ARSL  EM  +G+TP+  + + L+ +
Sbjct: 64  ISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTM 123

Query: 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
           Y + +   +AL ++  MRE K  +D    N ++++   +G+ +EA++LF  M+     +P
Sbjct: 124 YVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG-IEP 182

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           +  SY  +L +YG       AI LF  M    +  NV+    ++   GK    +    + 
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 242

Query: 492 GVSIDRGVKPDDRLCGCLLSV 512
               +RG++P+      ++S+
Sbjct: 243 QEMQNRGIEPNSITYSTIISI 263



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 51/242 (21%), Positives = 106/242 (43%), Gaps = 5/242 (2%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           P+  +    L +    + + ++   F  ++ +N+     + YN  M       + +    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNI-EQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  EM +  IE ++ITYSTII+   +    D+A   F+++  +G+  D+V Y  ++  Y 
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDKAAMLFQKLRSSGVDIDQVLYQTMIVAYE 300

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           ++G V       +R +    +PD I   +   +   +G  +   +V ++    G   ++ 
Sbjct: 301 RAGLVAHA----KRLLHELKRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDIT 356

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
           V+  ++    K  K G    +FD+M   G  P+   +  ++  YGK      A +++  M
Sbjct: 357 VFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPESNVIALVLNAYGKLHEFDKANDVYMEM 416

Query: 389 RE 390
           +E
Sbjct: 417 QE 418



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 87/191 (45%), Gaps = 3/191 (1%)

Query: 355 ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
           E  L+PD  T + LI  +GK      AL   ++M +++ P D +LY+ L+ +   +    
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
           +A  +F  +K S +  PD  +Y AM+N++G       A  L  EM   GV  N    + L
Sbjct: 62  KAISIFSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN- 533
           +    + ++  + + VF    +     D   C  ++ V      +++  K+   +++   
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180

Query: 534 -PKLVAFLNLI 543
            P +V++  L+
Sbjct: 181 EPNVVSYNTLL 191


>gi|60390261|sp|Q76C99.1|RF1_ORYSI RecName: Full=Protein Rf1, mitochondrial; AltName: Full=Fertility
           restorer; AltName: Full=Protein PPR; AltName:
           Full=Restorer for CMS; Flags: Precursor
 gi|33859440|dbj|BAC77665.2| PPR protein [Oryza sativa Indica Group]
 gi|33859442|dbj|BAC77666.2| Rf1 [Oryza sativa Indica Group]
 gi|41152689|dbj|BAD08214.1| fertility restorer [Oryza sativa Indica Group]
 gi|46091159|dbj|BAD13708.1| PPR protein [Oryza sativa Indica Group]
 gi|47550657|dbj|BAD20283.1| restorer for CMS [Oryza sativa Indica Group]
          Length = 791

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 143/292 (48%), Gaps = 1/292 (0%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
           +EM+   I  D +TY++II    +    D+A+E    M K G+MPD +TY++IL  Y  S
Sbjct: 220 HEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSS 279

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
           G+ +E +   ++  + G +PD + +S+L     ++G     R +   M   G++P +  Y
Sbjct: 280 GQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTY 339

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
            TLL+     G       L D MV +G+ PD    + LI  Y K      A+ ++ +MR+
Sbjct: 340 GTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQ 399

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
                + + Y  ++ +    G VE+A   FE M + +   P N  Y ++++   +    +
Sbjct: 400 QGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQM-IDEGLSPGNIVYNSLIHGLCTCNKWE 458

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            A EL  EM + G+ +N +    +I    K  R+ +  ++F + +  GVKP+
Sbjct: 459 RAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPN 510



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 94/369 (25%), Positives = 170/369 (46%), Gaps = 37/369 (10%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           K+Y  ++ +  + + P + + YN  + +L   +      ++ N MV N +  D +TY++I
Sbjct: 214 KAYSTYHEMLDRGILP-DVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSI 272

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
           +          EAI + ++M   G+ PD VTYS ++D   K+G+  E   +++     G 
Sbjct: 273 LHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGL 332

Query: 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348
           KP+   +  L + +   G    +  +L  M   G+ P+  V++ L+ A  K GK   A  
Sbjct: 333 KPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAML 392

Query: 349 LFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE------------------ 390
           +F +M + GL P+  T  A+I I  K+   +DA+  +E+M +                  
Sbjct: 393 VFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLC 452

Query: 391 --NKWP---------------MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDN 433
             NKW                ++ I +N++++     G V E+E+LFE M +    KP+ 
Sbjct: 453 TCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELM-VRIGVKPNV 511

Query: 434 YSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGV 493
            +Y  ++N Y   G +D A++L   M  +G+  N +  + LI    K  R++D + +F  
Sbjct: 512 ITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKE 571

Query: 494 SIDRGVKPD 502
               GV PD
Sbjct: 572 MESSGVSPD 580



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 149/319 (46%), Gaps = 2/319 (0%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F+ +  + L P E   Y   ++          +  L + MV N I  D+  +S +I   
Sbjct: 323 IFDSMTKRGLKP-EITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAY 381

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +    D+A+  F +M + GL P+ VTY A++ +  KSG+VE+ +  +E+ +  G  P  
Sbjct: 382 AKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGN 441

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           I ++ L         ++    ++ EM   G+  N + +N+++++  K G+   +  LF+ 
Sbjct: 442 IVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFEL 501

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           MV  G+ P+  T   LI  Y  A    +A++L   M       + + Y+TL+N    I  
Sbjct: 502 MVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISR 561

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
           +E+A  LF++M+ S    PD  +Y  +L           A EL+  ++E G  I +    
Sbjct: 562 MEDALVLFKEME-SSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYN 620

Query: 473 CLIQCLGKARRIDDLVRVF 491
            ++  L K +  DD +++F
Sbjct: 621 IILHGLCKNKLTDDALQMF 639



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 146/302 (48%), Gaps = 8/302 (2%)

Query: 169 KSYFFFNWIKSQNLFPMETIF---YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITY 225
           ++   F+ ++ Q L P    +     +  KS R        EQ+ +E +S      NI Y
Sbjct: 389 QAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSP----GNIVY 444

Query: 226 STIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVA 285
           +++I     CN ++ A E    M   G+  + + +++I+D + K G+V E   L+E  V 
Sbjct: 445 NSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVR 504

Query: 286 SGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGL 345
            G KP+ I ++ L   +  +G  D    +L  M S+G++PN V Y+TL+    K  +   
Sbjct: 505 IGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMED 564

Query: 346 ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405
           A  LF EM  SG++PD  T   +++   + R    A EL+ R+ E+   ++   YN +L+
Sbjct: 565 ALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILH 624

Query: 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
                 L ++A ++F+++ L D  K +  ++  M++     G  D A +LF   S  G+ 
Sbjct: 625 GLCKNKLTDDALQMFQNLCLMDL-KLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLV 683

Query: 466 IN 467
            N
Sbjct: 684 PN 685



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 83/341 (24%), Positives = 155/341 (45%), Gaps = 41/341 (12%)

Query: 190 YNVTMKSL----RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           YN+ +K L    R     +L+  +A++        D ++Y+T+I    +    D+A   +
Sbjct: 161 YNILLKGLCDENRSQEALELLHMMADDRGGGSPP-DVVSYTTVINGFFKEGDSDKAYSTY 219

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
             M   G++PD VTY++I+    K+  +++ + +    V +G  PD + ++ +   +  S
Sbjct: 220 HEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSS 279

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G        L++M+S GV+P++V Y+ L++ + K G+   AR +FD M + GL P+  T 
Sbjct: 280 GQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITT- 338

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
                                             Y TLL   A  G + E   L  D+ +
Sbjct: 339 ----------------------------------YGTLLQGYATKGALVEMHGLL-DLMV 363

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
            +   PD+Y ++ ++  Y   G VD A+ +F +M + G+  N +    +I  L K+ R++
Sbjct: 364 RNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVE 423

Query: 486 DLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           D +  F   ID G+ P + +   L+  +  C   E   ++I
Sbjct: 424 DAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELI 464



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 125/277 (45%), Gaps = 8/277 (2%)

Query: 241 AIEWFERMYKTG---LMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS- 296
           A+  + RM + G   + PD  TY  ++    ++G+++   +     +  G++ D IAF+ 
Sbjct: 68  AVSRYNRMARAGADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTP 127

Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVE- 355
           +L  +  +    D +  VL+ M  LG  PN+  YN LL+ +    +   A  L   M + 
Sbjct: 128 LLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADD 187

Query: 356 --SGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
              G  PD  + T +I  + K   +  A   +  M +     D + YN+++        +
Sbjct: 188 RGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAM 247

Query: 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTC 473
           ++A  +   M + +   PD  +Y ++L+ Y S G    AI   ++M   GV  +V+  + 
Sbjct: 248 DKAMEVLNTM-VKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSL 306

Query: 474 LIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
           L+  L K  R  +  ++F     RG+KP+    G LL
Sbjct: 307 LMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLL 343


>gi|356561677|ref|XP_003549106.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 511

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 160/335 (47%), Gaps = 2/335 (0%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           +K+ +F + + +Q  F ++ + Y   +  L    + + + +L  ++  + ++ D + Y+T
Sbjct: 144 KKALYFHDQLVAQG-FQLDQVSYGTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNT 202

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           II    +  L  +A + +  M   G+ PD VTY+ ++  +   G ++E  SL        
Sbjct: 203 IINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGHLKEAFSLLNEMKLKN 262

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
             P+   F++L     + G     + +L  M    ++P++  YN+L++      +   A+
Sbjct: 263 INPNVCTFNILIDALSKEGKMKEAKILLAVMMKACIKPDVFTYNSLIDGYFLVDEVKHAK 322

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
            +F  M + G+TPD +  T +I    K +   +A+ L+E M+      D + YN+L++  
Sbjct: 323 YVFYSMAQRGVTPDVQCYTNMINGLCKTKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGL 382

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
                +E A  L + MK     +PD YSYT +L+     G +++A E+F+ +   G  +N
Sbjct: 383 CKNHHLERAIALCKRMK-EQGIQPDVYSYTILLDGLCKSGRLEDAKEIFQRLLAKGYHLN 441

Query: 468 VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           V   T LI  L KA   D+ + +     D+G  PD
Sbjct: 442 VHAYTVLINRLCKAGFFDEALDLKSKMEDKGCMPD 476



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 84/350 (24%), Positives = 167/350 (47%), Gaps = 11/350 (3%)

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           P  T  +N  + SL   + +  +  L  +   N I  D  T S +I C         A  
Sbjct: 54  PPPTFHFNNILSSLVNNKHYPTVISLFKQFEPNGITPDLCTLSILINCFCHQAHITLAFS 113

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
            F  + K G  P+ +T + ++      G++++ L  +++ VA G++ D +++  L     
Sbjct: 114 VFANILKRGFHPNAITLNTLIKGLCFRGEIKKALYFHDQLVAQGFQLDQVSYGTLINGLC 173

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
           ++G+   +  +L++++   V+P++V+YNT++ ++ K    G A  ++ EM+  G++PD  
Sbjct: 174 KTGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVV 233

Query: 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
           T T LI  +      K+A  L   M+      +   +N L++  +  G ++EA+ L   M
Sbjct: 234 TYTTLIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNILIDALSKEGKMKEAKILLAVM 293

Query: 424 KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483
            +    KPD ++Y ++++ Y     V +A  +F  M++ GV  +V   T +I  L K + 
Sbjct: 294 -MKACIKPDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRGVTPDVQCYTNMINGLCKTKM 352

Query: 484 IDDLVRVFGVSIDRGVKPD--------DRLC--GCLLSVVSLCETSEDVG 523
           +D+ + +F     + + PD        D LC    L   ++LC+  ++ G
Sbjct: 353 VDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALCKRMKEQG 402



 Score = 82.8 bits (203), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 87/382 (22%), Positives = 155/382 (40%), Gaps = 22/382 (5%)

Query: 241 AIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGK 300
           A+  F  M      P    ++ IL     +     V+SL+++   +G  PD    S+L  
Sbjct: 41  AVASFNLMLLMRPPPPTFHFNNILSSLVNNKHYPTVISLFKQFEPNGITPDLCTLSILIN 100

Query: 301 MFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTP 360
            F           V   +   G  PN +  NTL++ +   G+   A    D++V  G   
Sbjct: 101 CFCHQAHITLAFSVFANILKRGFHPNAITLNTLIKGLCFRGEIKKALYFHDQLVAQGFQL 160

Query: 361 DEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLF 420
           D+ +   LI    K    K    L  ++  +    D ++YNT++N      L+ +A  ++
Sbjct: 161 DQVSYGTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVY 220

Query: 421 EDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK 480
            +M +     PD  +YT +++ +   G++  A  L  EM    +  NV     LI  L K
Sbjct: 221 SEMIVKGI-SPDVVTYTTLIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNILIDALSK 279

Query: 481 ARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ--ANPKLVA 538
             ++ +   +  V +   +KPD      L+    L +  +    V   + Q    P +  
Sbjct: 280 EGKMKEAKILLAVMMKACIKPDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRGVTPDVQC 339

Query: 539 FLNLI---------EDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLID-ICRNRNLNER 588
           + N+I         ++  + FE +K   +N+I D          N LID +C+N +L ER
Sbjct: 340 YTNMINGLCKTKMVDEAMSLFEEMKH--KNMIPDIVTY------NSLIDGLCKNHHL-ER 390

Query: 589 AHELLYLGTLYGLYPGLHNKTL 610
           A  L       G+ P +++ T+
Sbjct: 391 AIALCKRMKEQGIQPDVYSYTI 412



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/291 (21%), Positives = 135/291 (46%), Gaps = 5/291 (1%)

Query: 134 CDNTEEAFLRAIT-EIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNV 192
           CD   E  ++ I+ ++    T  +   I+  LK   +++   N +K +N+ P    F N+
Sbjct: 217 CDVYSEMIVKGISPDVVTYTTLIHGFCIMGHLK---EAFSLLNEMKLKNINPNVCTF-NI 272

Query: 193 TMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTG 252
            + +L    + +  + L   M+   I+ D  TY+++I      +    A   F  M + G
Sbjct: 273 LIDALSKEGKMKEAKILLAVMMKACIKPDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRG 332

Query: 253 LMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIR 312
           + PD   Y+ +++   K+  V+E +SL+E        PD + ++ L     ++   +   
Sbjct: 333 VTPDVQCYTNMINGLCKTKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAI 392

Query: 313 YVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIY 372
            + + MK  G+QP++  Y  LL+ + K+G+   A+ +F  ++  G   +    T LI   
Sbjct: 393 ALCKRMKEQGIQPDVYSYTILLDGLCKSGRLEDAKEIFQRLLAKGYHLNVHAYTVLINRL 452

Query: 373 GKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
            KA +  +AL+L  +M +     D + ++ ++    +    ++AE++  +M
Sbjct: 453 CKAGFFDEALDLKSKMEDKGCMPDAVTFDIIIRALFEKDENDKAEKILREM 503



 Score = 69.7 bits (169), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 80/150 (53%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  EM    +  D +TY+++I    + +  + AI   +RM + G+ PD  +Y+ +LD   
Sbjct: 359 LFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALCKRMKEQGIQPDVYSYTILLDGLC 418

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           KSG++E+   +++R +A G+  +  A++VL     ++G +D    +  +M+  G  P+ V
Sbjct: 419 KSGRLEDAKEIFQRLLAKGYHLNVHAYTVLINRLCKAGFFDEALDLKSKMEDKGCMPDAV 478

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
            ++ ++ A+ +  +   A  +  EM+  GL
Sbjct: 479 TFDIIIRALFEKDENDKAEKILREMIARGL 508



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/159 (21%), Positives = 70/159 (44%), Gaps = 1/159 (0%)

Query: 165 KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNIT 224
           K   ++   F  +K +N+ P + + YN  +  L      +    L   M    I+ D  +
Sbjct: 351 KMVDEAMSLFEEMKHKNMIP-DIVTYNSLIDGLCKNHHLERAIALCKRMKEQGIQPDVYS 409

Query: 225 YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
           Y+ ++    +    ++A E F+R+   G   +   Y+ +++   K+G  +E L L  +  
Sbjct: 410 YTILLDGLCKSGRLEDAKEIFQRLLAKGYHLNVHAYTVLINRLCKAGFFDEALDLKSKME 469

Query: 285 ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGV 323
             G  PD + F ++ +   E  + D    +L+EM + G+
Sbjct: 470 DKGCMPDAVTFDIIIRALFEKDENDKAEKILREMIARGL 508


>gi|255661148|gb|ACU25743.1| pentatricopeptide repeat-containing protein [Verbena bonariensis]
          Length = 425

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/283 (31%), Positives = 146/283 (51%), Gaps = 7/283 (2%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D  TYST+IT   +  LFD A+ W ++M +  +  D V YS ++++  K     + +S++
Sbjct: 8   DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
            R   SG+ PD +A++ +  +FG++  +   R ++ EM++ GV PN   Y+TLL    + 
Sbjct: 68  SRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVEN 127

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
            K   A S+F EM E     D  T   +I +YG+   AK+A +L+  MR+     + + Y
Sbjct: 128 KKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSY 187

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           NTLL +  D  L  EA  LF  M+  +  + +  +Y +M+ IYG     + A  L +EM 
Sbjct: 188 NTLLRVYGDAELFGEAIHLFRLMQRKN-IEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 246

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVF------GVSIDR 497
             G+  N +  + +I   GK  ++D    +F      GV ID+
Sbjct: 247 NRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQ 289



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/366 (22%), Positives = 169/366 (46%), Gaps = 6/366 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K     P + + YN  +      + F+    L +EM +  +  +  +YS
Sbjct: 60  YSKAISIFSRLKRSGFTP-DLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYS 118

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY + G  +E   L+      
Sbjct: 119 TLLTMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 178

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   ++ N+V YN+++   GK  +   A
Sbjct: 179 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKA 238

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R +   +D +LY T++  
Sbjct: 239 NNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVA 298

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K     +PDN      ++I    G ++ A  +F +  + G   
Sbjct: 299 YERAGLVAHAKRLLHELK-----RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVK 353

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           ++     +I    K ++  ++V VF      G  PD  +   +L+        +    V 
Sbjct: 354 DITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVY 413

Query: 527 TCLQQA 532
             +Q+ 
Sbjct: 414 MEMQEV 419



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/271 (23%), Positives = 138/271 (50%), Gaps = 1/271 (0%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
            +M  + +  D + YS +I  +++   + +AI  F R+ ++G  PD V Y+A+++V+ K+
Sbjct: 33  QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKA 92

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
               E  SL      +G  P+  ++S L  M+ E+  +     +  EM+ +    +L   
Sbjct: 93  KLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSIFAEMREIKCLLDLTTC 152

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
           N +++  G+ G    A  LF  M + G+ P+  +   L+++YG A    +A+ L+  M+ 
Sbjct: 153 NIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR 212

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
                + + YN+++ +       E+A  L ++M+ +   +P++ +Y+ +++I+G  G +D
Sbjct: 213 KNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ-NRGIEPNSITYSTIISIWGKVGKLD 271

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
            A  LF+++   GV I+ +    +I    +A
Sbjct: 272 RAAMLFQKLRSSGVDIDQVLYQTMIVAYERA 302



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 125/261 (47%), Gaps = 1/261 (0%)

Query: 252 GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGI 311
            L PD  TYS ++  + K G  +  LS  ++        D + +S L ++  +  DY   
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 312 RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371
             +   +K  G  P+LV YN ++   GKA     ARSL  EM  +G+TP+  + + L+ +
Sbjct: 64  ISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTM 123

Query: 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
           Y + +   +AL ++  MRE K  +D    N ++++   +G+ +EA++LF  M+     +P
Sbjct: 124 YVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG-IEP 182

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           +  SY  +L +YG       AI LF  M    +  NV+    ++   GK    +    + 
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 242

Query: 492 GVSIDRGVKPDDRLCGCLLSV 512
               +RG++P+      ++S+
Sbjct: 243 QEMQNRGIEPNSITYSTIISI 263



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/242 (21%), Positives = 105/242 (43%), Gaps = 5/242 (2%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           P+  +    L +    + + ++   F  ++ +N+     + YN  M       + +    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNI-EQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  EM +  IE ++ITYSTII+   +    D A   F+++  +G+  D+V Y  ++  Y 
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYE 300

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           ++G V       +R +    +PD I   +   +   +G  +   +V ++    G   ++ 
Sbjct: 301 RAGLVAHA----KRLLHELKRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDIT 356

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
           V+  ++    K  K G    +FD+M   G  PD   +  ++  YGK      A +++  M
Sbjct: 357 VFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVYMEM 416

Query: 389 RE 390
           +E
Sbjct: 417 QE 418



 Score = 62.4 bits (150), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 87/191 (45%), Gaps = 3/191 (1%)

Query: 355 ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
           E  L+PD  T + LI  +GK      AL   ++M +++ P D +LY+ L+ +   +    
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
           +A  +F  +K S +  PD  +Y AM+N++G       A  L  EM   GV  N    + L
Sbjct: 62  KAISIFSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN- 533
           +    + ++  + + +F    +     D   C  ++ V      +++  K+   +++   
Sbjct: 121 LTMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180

Query: 534 -PKLVAFLNLI 543
            P +V++  L+
Sbjct: 181 EPNVVSYNTLL 191


>gi|242048026|ref|XP_002461759.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
 gi|241925136|gb|EER98280.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
          Length = 896

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/341 (23%), Positives = 166/341 (48%), Gaps = 4/341 (1%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN+ +  L    + +    + +EM    +  + +T + ++    +   F+ A E FE   
Sbjct: 394 YNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRLCKAKKFEPAYEMFETAS 453

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
           + G  P+ VTY +++D   K G V++   L+E  + +G   +P+ ++ L + F   G  +
Sbjct: 454 QRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFENMLDTGHNANPVVYTSLIRNFFMHGRKE 513

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               + +EM   G QP+L + NT ++ + KAG     R++F+++   G  PD ++ + LI
Sbjct: 514 DGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILI 573

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
               KA  A++   ++  M++  + +D   YN +++     G +++A  + E+MK+    
Sbjct: 574 HGLTKAGQARETSSIFHAMKQQGFALDARAYNAVVDGFCKSGKLDKAYEVLEEMKVKR-V 632

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
            P   +Y ++++       +D A  LFEE    G+ +NV+  + LI   GK  RID+   
Sbjct: 633 PPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYL 692

Query: 490 VFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQ 530
           +    + +G+ P+      L+  +     +E++ + + C Q
Sbjct: 693 ILEEMMKKGLTPNVYTWNSLMDALV---KAEEINEALICFQ 730



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 145/326 (44%), Gaps = 3/326 (0%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           +K    F  IK     P +   Y++ +  L    Q +    + + M      LD   Y+ 
Sbjct: 548 EKGRAIFEDIKGYGFLP-DVRSYSILIHGLTKAGQARETSSIFHAMKQQGFALDARAYNA 606

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           ++    +    D+A E  E M    + P   TY +I+D  AK  +++E   L+E   + G
Sbjct: 607 VVDGFCKSGKLDKAYEVLEEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKG 666

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
            + + I +S L   FG+ G  D    +L+EM   G+ PN+  +N+L++A+ KA +   A 
Sbjct: 667 IELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKAEEINEAL 726

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
             F  M E   +P+  T + LI    + +    A   W+ M++     + + Y T++   
Sbjct: 727 ICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMIAGL 786

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
           A +G + +A  LFE  K ++   PD  S+ A++           A  +FEE    G  IN
Sbjct: 787 AKVGNITDACSLFERFK-ANGGTPDAASFNALIEGMSHANRAIEAYHVFEETRLKGCRIN 845

Query: 468 VMGCTCLIQCLGKARRIDDLVRV-FG 492
           V  C  L+  L KA  ++    V FG
Sbjct: 846 VKACISLLDALNKAECLEQAAVVGFG 871



 Score =  105 bits (262), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/301 (23%), Positives = 141/301 (46%), Gaps = 11/301 (3%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
            Y+ +I         + A+E   +M + G       ++ ++   A+ G+VE  L+L +  
Sbjct: 184 AYTVLIGAMAEARQPERALELLRQMQEVGYEVGVPLFTTLVRALAREGRVEGALALVDEV 243

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
             S  +PD + ++V    FG++G+ D       E+KS G++P+ V Y +++  + KAG+ 
Sbjct: 244 KGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKSQGLKPDDVSYTSMIWVLCKAGRL 303

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
             A  LF +M      P       +I  YG A   ++A +L ++++E       + +N++
Sbjct: 304 SEAEELFGQMETERAVPCAYAYNTMIMGYGSAGQFENAYKLLDQLKERGCIPSVVSFNSI 363

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           L        V+EA  LFE MK     +P++ +Y  ++++    G V+ A  + +EM   G
Sbjct: 364 LTCLGKKRKVDEALTLFEAMKKD--AEPNSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAG 421

Query: 464 VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVG 523
           +  N++    ++  L KA++ +    +F  +  RG  P+          V+ C   + +G
Sbjct: 422 LFPNLLTVNIMVDRLCKAKKFEPAYEMFETASQRGCNPNS---------VTYCSLIDGLG 472

Query: 524 K 524
           K
Sbjct: 473 K 473



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 69/302 (22%), Positives = 138/302 (45%), Gaps = 2/302 (0%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN  +       QF+   +L +++         +++++I+TC  +    DEA+  FE M 
Sbjct: 325 YNTMIMGYGSAGQFENAYKLLDQLKERGCIPSVVSFNSILTCLGKKRKVDEALTLFEAMK 384

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
           K    P+  TY+ I+D+   +GKVEE   + +    +G  P+ +  +++     ++  ++
Sbjct: 385 KDA-EPNSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRLCKAKKFE 443

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               + +     G  PN V Y +L++ +GK G    A  LF+ M+++G   +    T+LI
Sbjct: 444 PAYEMFETASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFENMLDTGHNANPVVYTSLI 503

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
           + +      +D  ++++ M       D  L NT ++     G VE+   +FED+K   + 
Sbjct: 504 RNFFMHGRKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFL 563

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
            PD  SY+ +++     G       +F  M + G A++      ++    K+ ++D    
Sbjct: 564 -PDVRSYSILIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAVVDGFCKSGKLDKAYE 622

Query: 490 VF 491
           V 
Sbjct: 623 VL 624



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/319 (23%), Positives = 137/319 (42%), Gaps = 38/319 (11%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           FF    + +  P+    YN  +  L        +E++  EM      + N   + +++  
Sbjct: 100 FFLASSAASPHPLPADAYNAVLPFL--SHDLAAMEKVLEEMSVLGYGVPNPACADLVSAL 157

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            R    D+A      M +    P    Y+ ++   A++ + E  L L  +    G++   
Sbjct: 158 VRTRRLDDAERVIAAMRRLKFRPAFSAYTVLIGAMAEARQPERALELLRQMQEVGYEVGV 217

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
             F+ L +     G  +G   ++ E+K   ++P++V+YN  ++  GKAG   +A   F E
Sbjct: 218 PLFTTLVRALAREGRVEGALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHE 277

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           +   GL PD+ + T++I +  KA                                   G 
Sbjct: 278 LKSQGLKPDDVSYTSMIWVLCKA-----------------------------------GR 302

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
           + EAE LF  M+ ++   P  Y+Y  M+  YGS G  +NA +L +++ E G   +V+   
Sbjct: 303 LSEAEELFGQME-TERAVPCAYAYNTMIMGYGSAGQFENAYKLLDQLKERGCIPSVVSFN 361

Query: 473 CLIQCLGKARRIDDLVRVF 491
            ++ CLGK R++D+ + +F
Sbjct: 362 SILTCLGKKRKVDEALTLF 380



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 140/312 (44%), Gaps = 11/312 (3%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D  +YS +I    +     E    F  M + G   D   Y+A++D + KSGK+++   + 
Sbjct: 565 DVRSYSILIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAVVDGFCKSGKLDKAYEVL 624

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
           E        P    +  +     +    D    + +E KS G++ N++VY++L++  GK 
Sbjct: 625 EEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKV 684

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G+   A  + +EM++ GLTP+  T  +L+    KA    +AL  ++ M+E K   +   Y
Sbjct: 685 GRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTY 744

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           + L+N    +    +A   +++M+      P+  +YT M+      GN+ +A  LFE   
Sbjct: 745 SILINGLCRVQKYNKAFVFWQEMQKQGLV-PNVVTYTTMIAGLAKVGNITDACSLFERFK 803

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSE 520
             G   +      LI+ +  A R  +   VF          + RL GC ++V + C +  
Sbjct: 804 ANGGTPDAASFNALIEGMSHANRAIEAYHVF---------EETRLKGCRINVKA-CISLL 853

Query: 521 DVGKVITCLQQA 532
           D      CL+QA
Sbjct: 854 DALNKAECLEQA 865



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/357 (21%), Positives = 160/357 (44%), Gaps = 35/357 (9%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L +E+  + +E D + Y+  I C  +    D A ++F  +   GL PD+V+Y++++ V  
Sbjct: 239 LVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKSQGLKPDDVSYTSMIWVLC 298

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           K+G++ E   L+ +       P   A++ +   +G +G ++    +L ++K  G  P++V
Sbjct: 299 KAGRLSEAEELFGQMETERAVPCAYAYNTMIMGYGSAGQFENAYKLLDQLKERGCIPSVV 358

Query: 329 VYNTLLEAMGKAGKPGLARSLF----------------------------------DEMV 354
            +N++L  +GK  K   A +LF                                  DEM 
Sbjct: 359 SFNSILTCLGKKRKVDEALTLFEAMKKDAEPNSSTYNIIIDMLCMAGKVEEAYMIRDEME 418

Query: 355 ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
            +GL P+  T+  ++    KA+  + A E++E   +     + + Y +L++     G V+
Sbjct: 419 HAGLFPNLLTVNIMVDRLCKAKKFEPAYEMFETASQRGCNPNSVTYCSLIDGLGKKGNVD 478

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
           +A RLFE+M L      +   YT+++  +   G  ++  ++F+EM+  G   ++      
Sbjct: 479 DAYRLFENM-LDTGHNANPVVYTSLIRNFFMHGRKEDGHKIFKEMNRRGCQPDLTLLNTY 537

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ 531
           + C+ KA  ++    +F      G  PD R    L+  ++    + +   +   ++Q
Sbjct: 538 MDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMKQ 594


>gi|125592120|gb|EAZ32470.1| hypothetical protein OsJ_16686 [Oryza sativa Japonica Group]
          Length = 879

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/371 (25%), Positives = 165/371 (44%), Gaps = 40/371 (10%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           ++ EM S  I+ +N TYS +I      + F  A   FE M ++GL PD   Y+ +++ + 
Sbjct: 439 ISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFC 498

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           K G ++  + + E+      +P   AF  + + +  +GD       L  M+  G  P ++
Sbjct: 499 KMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVM 558

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            YN L+  + +  K   A S+ D+M  +G+TP+E T T +++ Y  +     A E + ++
Sbjct: 559 TYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKI 618

Query: 389 RENKWPMDFILYNTLLNMCADIGLVE---------------------------------- 414
           +E+   +D  +Y TLL  C   G ++                                  
Sbjct: 619 KESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDV 678

Query: 415 -EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTC 473
            EAE L + MK  D   P+ ++YT+ +N     G++  A ++ EEM ++G+  NV   T 
Sbjct: 679 WEAEDLMKQMK-EDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTT 737

Query: 474 LIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGC----LLSVVSLCETSEDVGKVITCL 529
           LI+   +    D  ++ F      G+KPD+    C    LLS  ++ E S   G +  C 
Sbjct: 738 LIKGWARVSLPDRALKCFEEMKLAGLKPDEASYHCLVTSLLSRATVMEGSTYTGIISVCR 797

Query: 530 QQANPKLVAFL 540
           + +   L   L
Sbjct: 798 EMSENDLTVDL 808



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/303 (24%), Positives = 144/303 (47%), Gaps = 2/303 (0%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           I+ N+     + G   +  E+L  EM  + I+     Y +++         ++ +  FER
Sbjct: 349 IYSNIIHAHCQSG-NMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFER 407

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           + + G  P  ++Y  +L++Y K GKV + LS+ +   + G K +   +S+L   F    D
Sbjct: 408 LKECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHD 467

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
           +     + +EM   G+QP+  +YN L+EA  K G    A  + ++M +  + P  +    
Sbjct: 468 FANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRP 527

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           +I+ Y  A   K AL+  + MR +      + YN L++       V+ A  + + M ++ 
Sbjct: 528 IIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAG 587

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
              P+ ++YT ++  Y + G++  A E F ++ E G+ ++V     L++   K+ R+   
Sbjct: 588 -ITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSA 646

Query: 488 VRV 490
           + V
Sbjct: 647 LAV 649



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 99/459 (21%), Positives = 194/459 (42%), Gaps = 21/459 (4%)

Query: 88  SKPKSTWVNPTKPRRSVLSLQRQKRSTYSYNPRVRDLKLFARKLNDCDNTEEAFLRAITE 147
           ++ ++ WVN  +        +R+ RS + +  R    + F R +    +  +A + A   
Sbjct: 186 AEQRARWVNDGR--------RREPRSPW-HEGRDEACREFRRVVESRPDNWQAVVSAFER 236

Query: 148 IPHQPTRENALLILNSLKFWQKSYF--FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQL 205
           IP    RE  L+I+   K   K +    F  ++++ + P   +F ++ + +    R  + 
Sbjct: 237 IPKPSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSL-VHAYAVARDMRG 295

Query: 206 IEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMP-DEVTYSAIL 264
                 EM S  +EL  +TYS +I+   + N    A   F+   KT L   + + YS I+
Sbjct: 296 ALSCVEEMKSEGLELTIVTYSILISGFAKINDSQSADNLFKEA-KTKLSSLNGIIYSNII 354

Query: 265 DVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQ 324
             + +SG +E    L       G       +  +   +    + +    V + +K  G +
Sbjct: 355 HAHCQSGNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGFK 414

Query: 325 PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384
           P+++ Y  LL    K GK   A S+  EM   G+  + KT + LI  +       +A  +
Sbjct: 415 PSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAI 474

Query: 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYG 444
           +E M  +    D  +YN L+     +G ++ A  + E M+  +  +P N ++  ++  Y 
Sbjct: 475 FEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQ-KERMQPSNRAFRPIIEGYA 533

Query: 445 SGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR 504
             G++ +A++  + M   G    VM    LI  L +  ++   V V       G+ P++ 
Sbjct: 534 VAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEH 593

Query: 505 LCGCLLSVVSLCETSEDVGKV---ITCLQQANPKLVAFL 540
               ++   +    S D+GK     T ++++  KL  ++
Sbjct: 594 TYTIIMRGYA---ASGDIGKAFEYFTKIKESGLKLDVYI 629



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 98/215 (45%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN  +  L    + Q    + ++M    I  +  TY+ I+          +A E+F ++ 
Sbjct: 560 YNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIK 619

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
           ++GL  D   Y  +L    KSG+++  L++           +   +++L   +   GD  
Sbjct: 620 ESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVW 679

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               ++++MK  GV PN+  Y + + A  KAG    A  + +EMV+ GL P+ KT T LI
Sbjct: 680 EAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLI 739

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
           K + +      AL+ +E M+      D   Y+ L+
Sbjct: 740 KGWARVSLPDRALKCFEEMKLAGLKPDEASYHCLV 774



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 85/378 (22%), Positives = 159/378 (42%), Gaps = 26/378 (6%)

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
           FER+ K    P    +  ++  YAK G      + +E   A G +P+   F+ L   +  
Sbjct: 234 FERIPK----PSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAV 289

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
           + D  G    ++EMKS G++  +V Y+ L+    K      A +LF E      + +   
Sbjct: 290 ARDMRGALSCVEEMKSEGLELTIVTYSILISGFAKINDSQSADNLFKEAKTKLSSLNGII 349

Query: 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
            + +I  + ++   + A EL   M E+       +Y+++++    I    +   +FE +K
Sbjct: 350 YSNIIHAHCQSGNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLK 409

Query: 425 LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484
              + KP   SY  +LN+Y   G V  A+ + +EM   G+  N    + LI         
Sbjct: 410 ECGF-KPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDF 468

Query: 485 DDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ-----ANPKLVAF 539
            +   +F   +  G++PD  +   L+   + C+   ++ + I  L++       P   AF
Sbjct: 469 ANAFAIFEEMLRSGLQPDRAIYNLLIE--AFCKMG-NMDRAICILEKMQKERMQPSNRAF 525

Query: 540 LNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFC-------NCLIDICRNRNLNERAHEL 592
             +IE  +     +  + ++ + DT    RR  C       N LI     ++  +RA  +
Sbjct: 526 RPIIEGYA-----VAGDMKSAL-DTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSV 579

Query: 593 LYLGTLYGLYPGLHNKTL 610
           L   ++ G+ P  H  T+
Sbjct: 580 LDKMSIAGITPNEHTYTI 597



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 96/204 (47%), Gaps = 11/204 (5%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           K++ +F  IK   L  ++   Y   +++     + Q    +  EM   +I  +   Y+ +
Sbjct: 610 KAFEYFTKIKESGL-KLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNIL 668

Query: 229 ITC-AKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           I   A+R +++ EA +  ++M + G+ P+  TY++ ++   K+G ++    + E  V  G
Sbjct: 669 IDGWARRGDVW-EAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVG 727

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA-------MGKA 340
            KP+   ++ L K +      D      +EMK  G++P+   Y+ L+ +       M  +
Sbjct: 728 LKPNVKTYTTLIKGWARVSLPDRALKCFEEMKLAGLKPDEASYHCLVTSLLSRATVMEGS 787

Query: 341 GKPGLARSLFDEMVESGLTPDEKT 364
              G+  S+  EM E+ LT D +T
Sbjct: 788 TYTGII-SVCREMSENDLTVDLRT 810


>gi|224093190|ref|XP_002309826.1| predicted protein [Populus trichocarpa]
 gi|222852729|gb|EEE90276.1| predicted protein [Populus trichocarpa]
          Length = 1480

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 104/412 (25%), Positives = 189/412 (45%), Gaps = 32/412 (7%)

Query: 117 YNPRVRDLKLFARKLNDCDNTE---EAFLRAITEIPHQPTRENALLILNSLK--FWQKSY 171
           Y+P  R L      L   +      E F+RA      +P+  N + + N++   + ++  
Sbjct: 216 YSPNARMLSTILSVLGKANQEALAVEVFMRA------EPSAGNTVQVYNAMMGVYARRGR 269

Query: 172 F-----FFNWIKSQNLFPMETIFYNVTMKSLRFGRQF-QLIEQLANEMVSNEIELDNITY 225
           F       + ++ +   P    F  +    L+ G     L  +L NE+  + +  D ITY
Sbjct: 270 FNKVQELLDLMRERGCKPDLVSFNTLINARLKAGAMMPNLAIELLNEVRRSGLRPDTITY 329

Query: 226 STIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAK---SGKVEEVLSLYER 282
           +T+I+   R +  +EA + F+ M      PD  TY+A++ VY +   SGK E++ +  E 
Sbjct: 330 NTLISACSRASNLEEAAKVFDDMEAHHCQPDLWTYNAMISVYGRCGLSGKAEQLFNDLE- 388

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
             + G+ PD ++++ L   F   G+ + ++ + +EM  +G   + + YNT++   GK G+
Sbjct: 389 --SRGFFPDAVSYNSLLYAFAREGNVEKVKEIWEEMVKIGFGKDEMTYNTMIHMYGKQGQ 446

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
             LA  L+ +M  SG  PD  T T LI   GK     +A  +   M           Y+ 
Sbjct: 447 NELALQLYRDMQSSGRNPDAVTYTVLIDSLGKTNKIAEAAGVMSEMLNTGVKPTLKTYSA 506

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
           L+   A  G   EAE  F+ M L    +PD+ +Y+ ML+I+        A+ L++EM   
Sbjct: 507 LICGYAKAGKPVEAEETFDCM-LRSGIRPDHLAYSVMLDIHLRFNEPKRAMTLYKEMLHD 565

Query: 463 GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVS 514
           G+ ++      +++ L K  +++D+ RV        ++  + +CG     +S
Sbjct: 566 GITLDHSLYELMLRTLRKVNKVEDIGRV--------IRDMEEICGMNTQTIS 609



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/301 (23%), Positives = 139/301 (46%), Gaps = 2/301 (0%)

Query: 232  AKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291
            A+  N+F E  + +  M   G  P    Y  +  + ++  +V +V ++      +G+KPD
Sbjct: 894  ARAGNIF-EVKKIYHGMKAAGYFPTMHLYRVMARLLSRGKQVRDVEAMLSEMEEAGFKPD 952

Query: 292  PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
               ++ + KM+    D+     V Q +K  G++P+   YNTL+    +  +P    SL  
Sbjct: 953  LSIWNSVLKMYVAIEDFRKTIQVYQRIKEDGLEPDEDTYNTLIVMYCRDHRPEEGFSLMH 1012

Query: 352  EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411
            EM  +GL P   T  +L+  +GK +  + A EL+E ++     +D   Y+T++ +  + G
Sbjct: 1013 EMRVAGLEPKLDTYKSLVASFGKQQLVEQAEELFEELQSKGCKLDRSFYHTMMKIYRNSG 1072

Query: 412  LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC 471
               +AERLF  MK +   +P   +   ++  YGS G    A ++   + E G  ++ +  
Sbjct: 1073 SHSKAERLFSMMKDAG-VEPTIATMHLLMVSYGSSGQPQEAEKVLSNLKETGSNLSTLPY 1131

Query: 472  TCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ 531
            + +I    +    +  ++        G++PD R+  C +   SL   + +   ++  LQ 
Sbjct: 1132 SSVIDAYLRNGDYNIGIQKLIQMKKEGLEPDHRIWTCFIRAASLSRRTSEAIVLLNALQD 1191

Query: 532  A 532
            A
Sbjct: 1192 A 1192



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/358 (20%), Positives = 151/358 (42%), Gaps = 47/358 (13%)

Query: 173  FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
             ++ +K+   FP   + Y V  + L  G+Q + +E + +EM     + D   +++++   
Sbjct: 905  IYHGMKAAGYFPTMHL-YRVMARLLSRGKQVRDVEAMLSEMEEAGFKPDLSIWNSVLKMY 963

Query: 233  KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
                 F + I+ ++R+ + GL PDE TY+ ++ +Y +  + EE  SL      +G +P  
Sbjct: 964  VAIEDFRKTIQVYQRIKEDGLEPDEDTYNTLIVMYCRDHRPEEGFSLMHEMRVAGLEPKL 1023

Query: 293  IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
              +  L   FG+    +    + +E++S G + +   Y+T+++    +G    A  LF  
Sbjct: 1024 DTYKSLVASFGKQQLVEQAEELFEELQSKGCKLDRSFYHTMMKIYRNSGSHSKAERLFSM 1083

Query: 353  MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
            M ++G+ P   T+  L+  YG +                                   G 
Sbjct: 1084 MKDAGVEPTIATMHLLMVSYGSS-----------------------------------GQ 1108

Query: 413  VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
             +EAE++  ++K +         Y+++++ Y   G+ +  I+   +M + G+  +    T
Sbjct: 1109 PQEAEKVLSNLKETG-SNLSTLPYSSVIDAYLRNGDYNIGIQKLIQMKKEGLEPDHRIWT 1167

Query: 473  CLIQCLGKARRIDDLVRVFGVSIDRGV---------KPDDRLCGCLLSVVSLCETSED 521
            C I+    +RR  + + +     D G          KP+  L   L   + + ET ED
Sbjct: 1168 CFIRAASLSRRTSEAIVLLNALQDAGFDLPIRLLTEKPES-LVSALDRCLEMLETLED 1224



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 79/394 (20%), Positives = 168/394 (42%), Gaps = 23/394 (5%)

Query: 225  YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
            + ++I C     L  EA + F  M   G+   E  Y +++ +Y K G  E    L +   
Sbjct: 710  FESLIQCCLENELITEASQVFSDMRFCGIKASESLYESMVLLYCKMGFPETAHHLIDFAE 769

Query: 285  ASGWKPDPIAFSV-LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
            + G   + I+  V + + +G    +     V   ++   +  +  V+N L+EA   +G  
Sbjct: 770  SDGILLNNISLYVNVIEAYGRLKLWQKAESVAGNLRQRCITVDRKVWNALIEAYAASGCY 829

Query: 344  GLARSLFDEMVESGLTPDEKTLTALIK---IYGKARWAKDALELWERMRENKWPMDFILY 400
              AR++F+ M+  G +P   T+  L++   + G+        EL+  ++E +  M F + 
Sbjct: 830  ERARAIFNTMMRDGPSPTVDTINGLLQALIVDGRLD------ELYVVVQELQ-DMGFKIS 882

Query: 401  NT----LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELF 456
             +    +L+  A  G + E ++++  MK + Y  P  + Y  M  +   G  V +   + 
Sbjct: 883  KSSILLMLDAFARAGNIFEVKKIYHGMKAAGYF-PTMHLYRVMARLLSRGKQVRDVEAML 941

Query: 457  EEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLC 516
             EM E G   ++     +++           ++V+    + G++PD+     L+ +    
Sbjct: 942  SEMEEAGFKPDLSIWNSVLKMYVAIEDFRKTIQVYQRIKEDGLEPDEDTYNTLIVMYCRD 1001

Query: 517  ETSEDVGKVITCLQQAN--PKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDA---RRP 571
               E+   ++  ++ A   PKL  + +L+   S G + + E+   + ++ +       R 
Sbjct: 1002 HRPEEGFSLMHEMRVAGLEPKLDTYKSLVA--SFGKQQLVEQAEELFEELQSKGCKLDRS 1059

Query: 572  FCNCLIDICRNRNLNERAHELLYLGTLYGLYPGL 605
            F + ++ I RN   + +A  L  +    G+ P +
Sbjct: 1060 FYHTMMKIYRNSGSHSKAERLFSMMKDAGVEPTI 1093



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 74/397 (18%), Positives = 164/397 (41%), Gaps = 7/397 (1%)

Query: 214  VSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKV 273
            +S+  E+D     +I++         EA++  E + +      ++   A++ +  K+ ++
Sbjct: 629  ISDHFEIDRENLLSILSSYSSSGRHAEALDLLEFLKEHSPRSSQMITEALVVMLCKAQQL 688

Query: 274  EEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTL 333
            +  L  Y      G+      F  L +   E+        V  +M+  G++ +  +Y ++
Sbjct: 689  DAALKEYSNNRELGFTGSFTMFESLIQCCLENELITEASQVFSDMRFCGIKASESLYESM 748

Query: 334  LEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA-LIKIYGKARWAKDALELWERMRENK 392
            +    K G P  A  L D     G+  +  +L   +I+ YG+ +  + A  +   +R+  
Sbjct: 749  VLLYCKMGFPETAHHLIDFAESDGILLNNISLYVNVIEAYGRLKLWQKAESVAGNLRQRC 808

Query: 393  WPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNA 452
              +D  ++N L+   A  G  E A  +F  M + D   P   +   +L      G +D  
Sbjct: 809  ITVDRKVWNALIEAYAASGCYERARAIFNTM-MRDGPSPTVDTINGLLQALIVDGRLDEL 867

Query: 453  IELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSV 512
              + +E+ ++G  I+      ++    +A  I ++ +++      G  P   L   +  +
Sbjct: 868  YVVVQELQDMGFKISKSSILLMLDAFARAGNIFEVKKIYHGMKAAGYFPTMHLYRVMARL 927

Query: 513  VSLCETSEDVGKVITCLQQANPKL-VAFLNLIEDNSTGFENIKEEFR--NVIKDTEVDAR 569
            +S  +   DV  +++ +++A  K  ++  N +       E+ ++  +    IK+  ++  
Sbjct: 928  LSRGKQVRDVEAMLSEMEEAGFKPDLSIWNSVLKMYVAIEDFRKTIQVYQRIKEDGLEPD 987

Query: 570  RPFCNCLIDI-CRNRNLNERAHELLYLGTLYGLYPGL 605
                N LI + CR+    E    L++   + GL P L
Sbjct: 988  EDTYNTLIVMYCRDHR-PEEGFSLMHEMRVAGLEPKL 1023



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 93/210 (44%), Gaps = 8/210 (3%)

Query: 359 TPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAER 418
           +P+ + L+ ++ + GKA     A+E++ R  E        +YN ++ + A  G   + + 
Sbjct: 217 SPNARMLSTILSVLGKANQEALAVEVFMRA-EPSAGNTVQVYNAMMGVYARRGRFNKVQE 275

Query: 419 LFEDMKLSDYCKPDNYSYTAMLNIYGSGGNV--DNAIELFEEMSELGVAINVMGCTCLIQ 476
           L + M+    CKPD  S+  ++N     G +  + AIEL  E+   G+  + +    LI 
Sbjct: 276 LLDLMR-ERGCKPDLVSFNTLINARLKAGAMMPNLAIELLNEVRRSGLRPDTITYNTLIS 334

Query: 477 CLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--P 534
              +A  +++  +VF        +PD      ++SV   C  S    ++   L+     P
Sbjct: 335 ACSRASNLEEAAKVFDDMEAHHCQPDLWTYNAMISVYGRCGLSGKAEQLFNDLESRGFFP 394

Query: 535 KLVAFLNLIE--DNSTGFENIKEEFRNVIK 562
             V++ +L+         E +KE +  ++K
Sbjct: 395 DAVSYNSLLYAFAREGNVEKVKEIWEEMVK 424


>gi|147789026|emb|CAN75781.1| hypothetical protein VITISV_012425 [Vitis vinifera]
          Length = 993

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/320 (27%), Positives = 165/320 (51%), Gaps = 14/320 (4%)

Query: 175 NWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQL--ANEMVSNEIELDNITYSTIITCA 232
           +W++ +  F  + +FY+  +    + R+  L+E +    EM+   I  D ++Y+ +I   
Sbjct: 147 SWMEREE-FVFDVVFYSSWICG--YFREGVLVEAIRKHKEMIEKGIAPDTVSYTILIDGF 203

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            R    ++AI + E+M K GL P+ VTY+AI+  + K GK++E  +L++     G + D 
Sbjct: 204 SREGYVEKAIGFLEKMKKDGLKPNLVTYTAIMLGFCKKGKLDEAYTLFKMVENLGIEVDE 263

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
             +  L   F   GD D +  +L++M+  G+ P++V YN+++  + KAG+   A    DE
Sbjct: 264 FMYVTLIDGFCTRGDIDCVFGLLEDMEKRGISPSIVTYNSIINGLCKAGRTSEA----DE 319

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
            V  G+  D  T + L+  Y +    K  LE   R+ E+   +D ++ NT++     +G 
Sbjct: 320 -VSKGIAGDAVTFSTLLHGYIEEENVKGILETKRRLEEDGVCIDLVMCNTIIKALLMVGA 378

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC- 471
           +E+A   ++ M   D    D+ +Y  M+N Y     ++ A+E+F+E  +   +I+ + C 
Sbjct: 379 LEDAYAFYKGMSGMDLV-ADSVTYCTMINGYCRVXRIEEALEIFDEFRK--TSISSVSCY 435

Query: 472 TCLIQCLGKARRIDDLVRVF 491
            C+I  L +   +D  + VF
Sbjct: 436 KCMIYGLCRKGMVDMAIEVF 455



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 97/196 (49%), Gaps = 1/196 (0%)

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
           D + +S++  +  + G  D    +   +K  G+  N+  YN+++  + + G    A  LF
Sbjct: 638 DLVDYSIMIDVLCKEGHLDKALDLCAFVKKKGIALNIYAYNSVINGLCRQGCLVQAFRLF 697

Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
           D + +  L P E T   LI    K     DA +L+E+M    +  +  +YN+L++     
Sbjct: 698 DSLEKIDLVPSEITYATLIDSLCKEGCLLDAKQLFEKMVXKGFNPNVRVYNSLIDGYCKF 757

Query: 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG 470
           G +EEA  L  D+K +   KPD ++ +A++N Y   G+++ A+  F E  +  +  + +G
Sbjct: 758 GNMEEALNLLIDLK-ARCIKPDEFTVSALINGYCHKGDMEGALGFFFEFKKKDILPDFLG 816

Query: 471 CTCLIQCLGKARRIDD 486
              L++ L    R+++
Sbjct: 817 FMYLVRGLCAKGRMEE 832



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 67/136 (49%), Gaps = 4/136 (2%)

Query: 223 ITYSTIIT--CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           ITY+T+I   C + C L  +A + FE+M   G  P+   Y++++D Y K G +EE L+L 
Sbjct: 710 ITYATLIDSLCKEGCLL--DAKQLFEKMVXKGFNPNVRVYNSLIDGYCKFGNMEEALNLL 767

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
               A   KPD    S L   +   GD +G      E K   + P+ + +  L+  +   
Sbjct: 768 IDLKARCIKPDEFTVSALINGYCHKGDMEGALGFFFEFKKKDILPDFLGFMYLVRGLCAK 827

Query: 341 GKPGLARSLFDEMVES 356
           G+   AR +  EM+++
Sbjct: 828 GRMEEARGILREMLQT 843



 Score = 59.7 bits (143), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 62/277 (22%), Positives = 120/277 (43%), Gaps = 11/277 (3%)

Query: 151 QPTRENALLILNSLKFWQKSYFFFNWIK---SQNLFPMETIFYNVTMKSLRFGRQFQLIE 207
           +P     L+    +K   K+ FF   I+   S   FP+        +KSL+   +     
Sbjct: 571 EPRVSKVLVPYMCMKDADKALFFLTNIQVNTSAVAFPVSV------LKSLKKNGRILDAY 624

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           +L      N   +D + YS +I    +    D+A++    + K G+  +   Y+++++  
Sbjct: 625 KLVIGAEENLPVMDLVDYSIMIDVLCKEGHLDKALDLCAFVKKKGIALNIYAYNSVINGL 684

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            + G + +   L++        P  I ++ L     + G     + + ++M   G  PN+
Sbjct: 685 CRQGCLVQAFRLFDSLEKIDLVPSEITYATLIDSLCKEGCLLDAKQLFEKMVXKGFNPNV 744

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
            VYN+L++   K G    A +L  ++    + PDE T++ALI  Y      + AL  +  
Sbjct: 745 RVYNSLIDGYCKFGNMEEALNLLIDLKARCIKPDEFTVSALINGYCHKGDMEGALGFFFE 804

Query: 388 MRENKWPMDFILYNTLL-NMCADIGLVEEAERLFEDM 423
            ++     DF+ +  L+  +CA  G +EEA  +  +M
Sbjct: 805 FKKKDILPDFLGFMYLVRGLCAK-GRMEEARGILREM 840



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 98/220 (44%), Gaps = 4/220 (1%)

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL--VVYNTLLEAMGKAGKPG 344
           G  P    F  L   F   G       VL+ M    V+      V ++++    K  KP 
Sbjct: 45  GILPSSFTFHSLIHSFTSQGKMSRAIEVLELMTHDKVRYPFGNFVSSSVISGFCKISKPQ 104

Query: 345 LARSLFDEMVESG-LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
           LA   F+  V S  L P+  T TAL+    +    ++  +L   M   ++  D + Y++ 
Sbjct: 105 LAVGFFENAVNSRVLRPNIATCTALLGALFQLGRVREVSDLVSWMEREEFVFDVVFYSSW 164

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           +      G++ EA R  ++M +     PD  SYT +++ +   G V+ AI   E+M + G
Sbjct: 165 ICGYFREGVLVEAIRKHKEM-IEKGIAPDTVSYTILIDGFSREGYVEKAIGFLEKMKKDG 223

Query: 464 VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
           +  N++  T ++    K  ++D+   +F +  + G++ D+
Sbjct: 224 LKPNLVTYTAIMLGFCKKGKLDEAYTLFKMVENLGIEVDE 263


>gi|356526577|ref|XP_003531893.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Glycine max]
          Length = 878

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 130/620 (20%), Positives = 261/620 (42%), Gaps = 106/620 (17%)

Query: 177 IKSQNLFPME--TIFYNVTMKSLRFGR-QFQLIEQLANEMVSNEIELDNITYSTII-TCA 232
           ++S   F +E   + YN  + +   G   F+++ +   EM++     D +TY++++ TC 
Sbjct: 248 LRSMGKFGLEPNLVTYNAIIDAGAKGELTFEIVVKFLEEMIAAGCMPDRLTYNSLLKTCV 307

Query: 233 -----KRCNLFDEAIEW-------------FERMYKTGLM-----------------PDE 257
                K C      +EW              + + K G M                 P+ 
Sbjct: 308 AKGRWKLCRDLLAEMEWKGIGRDVYTYNTYVDALCKGGRMDLARHAIDVEMPAKNIWPNV 367

Query: 258 VTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQE 317
           VTYS ++  Y+K+ + E+ L++Y+       + D ++++ L  ++   G ++      +E
Sbjct: 368 VTYSTLMAGYSKAERFEDALNIYDEMKHLLIRLDRVSYNTLVGLYANLGWFEEAVGKFKE 427

Query: 318 MKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARW 377
           M+  G++ ++V YN L+E  G+  K    + LFDEM    + P++ T + LIKIY K R 
Sbjct: 428 MECCGIKNDVVTYNALIEGYGRHNKYVEVQKLFDEMKARRIYPNDLTYSTLIKIYTKGRM 487

Query: 378 AKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYT 437
             +A++++  +++     D + Y+ L++     GL+E + RL  D+      +P+  +Y 
Sbjct: 488 YAEAMDVYRELKQEGMKTDVVFYSALIDALCKNGLIESSLRLL-DVMTEKGSRPNVVTYN 546

Query: 438 AMLNIYGSG----------------------------------------GNVDNAIELFE 457
           ++++ +  G                                        GN D  +++ E
Sbjct: 547 SIIDAFKIGQQLPALECAVDTPFQANEHQIKPSSSRLIVGNFQDQKTDIGNNDEIMKMLE 606

Query: 458 EMSELGVAINVMGCTCLIQCLGKARRIDD--LVRVFGVSIDRGVKPDDRLCGCLLSVVSL 515
           +++     +             K  R D+  +V++F    +  +KP+      +L+  S 
Sbjct: 607 QLAAEKAGLTKK---------DKRSRQDNFFIVQIFQKMHEMEIKPNVVTFSAILNACSC 657

Query: 516 CETSEDVGKVITCLQQANPKLVAFLN-LIEDNSTGFENIKEEFRNVIKDTEVDARRPFCN 574
           CET +D  K++  L+  + ++    + L+  +  G  +  +   + ++  +      F N
Sbjct: 658 CETFQDASKLLDALRVFDSQVYGVAHGLLMGHRQGIWDQTQTLFDELEHLDSSTASAFYN 717

Query: 575 CLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEW---SLDVRSLSVGAAQTALEE 631
            L D+  +      A  ++  G    ++ G        W   SLD+   S GAA   +  
Sbjct: 718 ALTDMLWHFGQKLGAQMVVIEGRNRNVWKG-------GWSTESLDLHLTSCGAACAMVHT 770

Query: 632 WMWTLAKIVLREEVLPQLFLAETGTGTHKFSQGLAT---AFASHVNKLAAPFRQSEGKAG 688
           W+  L   V   + LP +    TG G H    G  T   A  + +N + APF+ SE   G
Sbjct: 771 WLLELRTTVFGGQKLPPILSILTGWGKHSKVVGNGTLRKAVEALLNGIGAPFQISECNLG 830

Query: 689 CFVATREDLVSWVQARPSSI 708
            F +   ++ +W++ +PS++
Sbjct: 831 RFKSEGPEVAAWLR-QPSTL 849



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 98/331 (29%), Positives = 165/331 (49%), Gaps = 7/331 (2%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG-KVEEVLSLYER 282
           ++S +I+   R N F EA+     M K GL P+ VTY+AI+D  AK     E V+   E 
Sbjct: 227 SFSAMISALGRNNRFSEAVSLLRSMGKFGLEPNLVTYNAIIDAGAKGELTFEIVVKFLEE 286

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
            +A+G  PD + ++ L K     G +   R +L EM+  G+  ++  YNT ++A+ K G+
Sbjct: 287 MIAAGCMPDRLTYNSLLKTCVAKGRWKLCRDLLAEMEWKGIGRDVYTYNTYVDALCKGGR 346

Query: 343 PGLARSLFD-EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYN 401
             LAR   D EM    + P+  T + L+  Y KA   +DAL +++ M+     +D + YN
Sbjct: 347 MDLARHAIDVEMPAKNIWPNVVTYSTLMAGYSKAERFEDALNIYDEMKHLLIRLDRVSYN 406

Query: 402 TLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461
           TL+ + A++G  EEA   F++M+     K D  +Y A++  YG         +LF+EM  
Sbjct: 407 TLVGLYANLGWFEEAVGKFKEMECCG-IKNDVVTYNALIEGYGRHNKYVEVQKLFDEMKA 465

Query: 462 LGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVV---SLCET 518
             +  N +  + LI+   K R   + + V+      G+K D      L+  +    L E+
Sbjct: 466 RRIYPNDLTYSTLIKIYTKGRMYAEAMDVYRELKQEGMKTDVVFYSALIDALCKNGLIES 525

Query: 519 SEDVGKVITCLQQANPKLVAFLNLIEDNSTG 549
           S  +  V+T  + + P +V + ++I+    G
Sbjct: 526 SLRLLDVMT-EKGSRPNVVTYNSIIDAFKIG 555



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 71/325 (21%), Positives = 136/325 (41%), Gaps = 43/325 (13%)

Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
           S ++    +  K+E  L L+E     G+     +FS +    G +  +     +L+ M  
Sbjct: 194 SNMIRTLGRLKKIELALDLFEESRTRGYGNTVYSFSAMISALGRNNRFSEAVSLLRSMGK 253

Query: 321 LGVQPNLVVYNTLLEAMGKAGKP-GLARSLFDEMVESGLTPDEKTLTALIKI-YGKARW- 377
            G++PNLV YN +++A  K      +     +EM+ +G  PD  T  +L+K    K RW 
Sbjct: 254 FGLEPNLVTYNAIIDAGAKGELTFEIVVKFLEEMIAAGCMPDRLTYNSLLKTCVAKGRWK 313

Query: 378 ------------------------------------AKDALELWERMRENKWPMDFILYN 401
                                               A+ A+++ E   +N WP + + Y+
Sbjct: 314 LCRDLLAEMEWKGIGRDVYTYNTYVDALCKGGRMDLARHAIDV-EMPAKNIWP-NVVTYS 371

Query: 402 TLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461
           TL+   +     E+A  ++++MK     + D  SY  ++ +Y + G  + A+  F+EM  
Sbjct: 372 TLMAGYSKAERFEDALNIYDEMK-HLLIRLDRVSYNTLVGLYANLGWFEEAVGKFKEMEC 430

Query: 462 LGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSED 521
            G+  +V+    LI+  G+  +  ++ ++F     R + P+D     L+ + +      +
Sbjct: 431 CGIKNDVVTYNALIEGYGRHNKYVEVQKLFDEMKARRIYPNDLTYSTLIKIYTKGRMYAE 490

Query: 522 VGKVITCLQQANPKL-VAFLNLIED 545
              V   L+Q   K  V F + + D
Sbjct: 491 AMDVYRELKQEGMKTDVVFYSALID 515


>gi|78708657|gb|ABB47632.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1080

 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 164/335 (48%), Gaps = 7/335 (2%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           Y+V M +    R  + +  L  EM ++ ++ +  +Y+  I    +   FDEA     +M 
Sbjct: 198 YSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKME 257

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
             G  PD +T++ ++ V   +G++ +   ++ +   S  KPD + +  L   FG++GD  
Sbjct: 258 NEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQ 317

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
            +  +   MK+ G   N+V Y  +++A+ + G+   A  +FDEM + G+ P++ +  +LI
Sbjct: 318 SVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLI 377

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
             + KA    DALEL++ M  +    +   +   +N     G   +A + +E MK S   
Sbjct: 378 SGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMK-SKGI 436

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
            PD  +  A+L      G +  A  +F E+  +GV+ + +  T +I+C  KA + D+ V+
Sbjct: 437 VPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVK 496

Query: 490 VFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGK 524
           +F   I+    PD      +L+V SL +T    G+
Sbjct: 497 IFYDMIENNCVPD------VLAVNSLIDTLYKAGR 525



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/363 (22%), Positives = 166/363 (45%), Gaps = 36/363 (9%)

Query: 218 IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL 277
           I L+  TY+ ++    +     EA+E +  M   G++P   TYS ++  + K   VE VL
Sbjct: 156 IVLNAYTYNGLVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVL 215

Query: 278 SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
            L     A G KP+  ++++  ++ G++  +D    +L +M++ G +P+++ +  L++ +
Sbjct: 216 WLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVL 275

Query: 338 GKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDF 397
             AG+   A+ +F +M +S   PD  T   L+  +G    ++  +E+W  M+ + +  + 
Sbjct: 276 CDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNV 335

Query: 398 ILYNTLLNMCADIGLVEEAERLFEDMK--------------LSDYC-------------- 429
           + Y  +++    +G V EA  +F++MK              +S +               
Sbjct: 336 VAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKH 395

Query: 430 ------KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483
                 KP+ Y++   +N YG  G    AI+ +E M   G+  +V+    ++  L K+ R
Sbjct: 396 MDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGR 455

Query: 484 IDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAFLN 541
           +    RVF      GV PD      ++   S     ++  K+   + + N  P ++A  +
Sbjct: 456 LGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNS 515

Query: 542 LIE 544
           LI+
Sbjct: 516 LID 518



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/270 (24%), Positives = 139/270 (51%), Gaps = 1/270 (0%)

Query: 190  YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
            YN+ + ++    + + + ++  EM     E   +TY+TII+   +    ++AI+ +  + 
Sbjct: 793  YNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLM 852

Query: 250  KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
              G  P   TY  +LD   K+G++E+  +L+   +  G K +   +++L      +G+ +
Sbjct: 853  SQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTE 912

Query: 310  GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
             + ++ Q+M   G+ P++  Y  +++ + KAG+     + F +++E GL PD  T   LI
Sbjct: 913  KVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLI 972

Query: 370  KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
               GK++  ++A+ L+  M++     +   YN+L+      G   EA +++E++ L+   
Sbjct: 973  DGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEEL-LTKGW 1031

Query: 430  KPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
            KP+ ++Y A++  Y   G+ D+A   +  M
Sbjct: 1032 KPNVFTYNALIRGYSVSGSTDSAYAAYGRM 1061



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 138/318 (43%), Gaps = 1/318 (0%)

Query: 185  METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEW 244
            ++T  YN  +  L       + E L  EM       D  TY+ ++    +    +E ++ 
Sbjct: 753  LKTGLYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKV 812

Query: 245  FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
             E M++ G     VTY+ I+    KS ++E+ + LY   ++ G+ P P  +  L     +
Sbjct: 813  QEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLK 872

Query: 305  SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
            +G  +    +  EM   G + N  +YN LL     AG       LF +MV+ G+ PD K+
Sbjct: 873  AGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKS 932

Query: 365  LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
             T +I    KA    D L  + ++ E     D I YN L++       +EEA  LF +M+
Sbjct: 933  YTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQ 992

Query: 425  LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484
                  P+ Y+Y +++   G  G    A +++EE+   G   NV     LI+    +   
Sbjct: 993  KKGIV-PNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSGST 1051

Query: 485  DDLVRVFGVSIDRGVKPD 502
            D     +G  I  G  P+
Sbjct: 1052 DSAYAAYGRMIVGGCLPN 1069



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 96/406 (23%), Positives = 184/406 (45%), Gaps = 25/406 (6%)

Query: 115 YSYNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTRENALLILN-------SLKFW 167
           YSYN  +    L A +  D     E F       P +P     +L +N       S+K  
Sbjct: 371 YSYNSLISGF-LKADRFGD---ALELFKHMDIHGP-KPNGYTHVLFINYYGKSGESIKAI 425

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           Q+    +  +KS+ + P + +  N  +  L    +  + +++ +E+ +  +  D ITY+ 
Sbjct: 426 QR----YELMKSKGIVP-DVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTM 480

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           +I C  + + FDEA++ F  M +   +PD +  ++++D   K+G+ +E   ++ +     
Sbjct: 481 MIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMN 540

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
            +P    ++ L    G  G    + ++L+EM      PNL+ YNT+L+ + K G    A 
Sbjct: 541 LEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDAL 600

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
            +   M   G  PD  +   +I    K     +A  ++ +M++   P D+    T+L   
Sbjct: 601 DMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMKKVLIP-DYATLCTILPSF 659

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
             IGL++EA  + +D  L    K D  S  +++        ++ +IE  E ++  G+ ++
Sbjct: 660 VKIGLMKEALHIIKDYFLQPGSKTDRSSCHSLMEGILKKAGIEKSIEFAEIIASSGITLD 719

Query: 468 VMGCTCLIQCLGKARR---IDDLV---RVFGVSIDRGVKPDDRLCG 507
                 LI+ L K ++     +LV   + FGVS+  G+  +  +CG
Sbjct: 720 DFFLCPLIKHLCKQKKALEAHELVKKFKSFGVSLKTGLY-NSLICG 764



 Score =  103 bits (257), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 126/256 (49%), Gaps = 3/256 (1%)

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M + G++ +  TY+ ++    KSG   E L +Y   +  G  P    +SVL   FG+  D
Sbjct: 151 MKEAGIVLNAYTYNGLVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRD 210

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
            + + ++L+EM++ GV+PN+  Y   +  +G+A +   A  +  +M   G  PD  T T 
Sbjct: 211 VETVLWLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTV 270

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           LI++   A    DA +++ +M+++    D + Y TLL+   D G  +    ++  MK   
Sbjct: 271 LIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADG 330

Query: 428 YCKPDN-YSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
           Y   DN  +YTA+++     G V  A+E+F+EM + G+         LI    KA R  D
Sbjct: 331 Y--NDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGD 388

Query: 487 LVRVFGVSIDRGVKPD 502
            + +F      G KP+
Sbjct: 389 ALELFKHMDIHGPKPN 404



 Score = 97.4 bits (241), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 145/335 (43%), Gaps = 37/335 (11%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           +KS  F   I S  +  ++  F    +K L   ++     +L  +  S  + L    Y++
Sbjct: 702 EKSIEFAEIIASSGI-TLDDFFLCPLIKHLCKQKKALEAHELVKKFKSFGVSLKTGLYNS 760

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           +I      NL D A   F  M + G  PDE TY+ +LD   KS ++EE+L          
Sbjct: 761 LICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLK--------- 811

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
                                     V +EM   G +   V YNT++  + K+ +   A 
Sbjct: 812 --------------------------VQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAI 845

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
            L+  ++  G +P   T   L+    KA   +DA  L+  M E     +  +YN LLN  
Sbjct: 846 DLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGH 905

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
              G  E+   LF+DM +     PD  SYT +++     G +++ +  F ++ E+G+  +
Sbjct: 906 RIAGNTEKVCHLFQDM-VDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPD 964

Query: 468 VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           ++    LI  LGK++R+++ V +F     +G+ P+
Sbjct: 965 LITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPN 999



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 64/280 (22%), Positives = 115/280 (41%), Gaps = 39/280 (13%)

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
           + + G + EV  + +R +    K +   F+ +    G  G        L  MK  G+  N
Sbjct: 103 HGRVGDMAEVFDVMQRQIV---KANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLN 159

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR------W--- 377
              YN L+  + K+G    A  ++  M+  G+ P  +T + L+  +GK R      W   
Sbjct: 160 AYTYNGLVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLR 219

Query: 378 -----------------------AK---DALELWERMRENKWPMDFILYNTLLNMCADIG 411
                                  AK   +A  +  +M       D I +  L+ +  D G
Sbjct: 220 EMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAG 279

Query: 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC 471
            + +A+ +F  MK SD  KPD  +Y  +L+ +G  G+  + +E++  M   G   NV+  
Sbjct: 280 RISDAKDVFWKMKKSDQ-KPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAY 338

Query: 472 TCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
           T +I  L +  R+ + + +F     +G+ P+      L+S
Sbjct: 339 TAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLIS 378



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 106/245 (43%), Gaps = 13/245 (5%)

Query: 309 DGIRYVLQEMKSLGVQPNLV----VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
           DG    L+  +S   +P +       N +LE M   G+ G    +FD M    +  +  T
Sbjct: 68  DGPAEALERFRSAARKPRVAHTTASCNYMLELMRGHGRVGDMAEVFDVMQRQIVKANVGT 127

Query: 365 LTAL---IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFE 421
             A+   + + G  R A  AL +   M+E    ++   YN L+      G   EA  ++ 
Sbjct: 128 FAAIFGGLGVEGGLRSAPVALPV---MKEAGIVLNAYTYNGLVYFLVKSGFDREALEVYR 184

Query: 422 DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
            M + D   P   +Y+ ++  +G   +V+  + L  EM   GV  NV   T  I+ LG+A
Sbjct: 185 VM-MVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQA 243

Query: 482 RRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAF 539
           +R D+  R+     + G KPD      L+ V+       D   V   +++++  P  V +
Sbjct: 244 KRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTY 303

Query: 540 LNLIE 544
           + L++
Sbjct: 304 ITLLD 308



 Score = 45.1 bits (105), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 1/119 (0%)

Query: 173  FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            +F  +    L P + I YN+ +  L   ++ +    L NEM    I  +  TY+++I   
Sbjct: 952  YFRQLLEMGLEP-DLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHL 1010

Query: 233  KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291
             +     EA + +E +   G  P+  TY+A++  Y+ SG  +   + Y R +  G  P+
Sbjct: 1011 GKAGKAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLPN 1069


>gi|255661184|gb|ACU25761.1| pentatricopeptide repeat-containing protein [Lantana canescens]
          Length = 426

 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/283 (31%), Positives = 146/283 (51%), Gaps = 7/283 (2%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D  TYST+IT   +  LFD A+ W ++M +  +  D V YS ++++  K     + +S++
Sbjct: 8   DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
            R   SG+ PD +A++ +  +FG++  +   R ++ EMK+ GV PN   Y+TLL    + 
Sbjct: 68  SRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTXSYSTLLTMYVEN 127

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
            K   A S+F EM E     D  T   +I +YG+   AK+A +L+  MR+     + + Y
Sbjct: 128 KKFLEALSVFSEMREJKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSY 187

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           NTLL +  D  L  EA  LF  M+  +  + +  +Y +M+ IYG     + A  L +EM 
Sbjct: 188 NTLLRVYGDAELFGEAIHLFRLMQRKN-IEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 246

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVF------GVSIDR 497
             G+  N +  + +I   GK  ++D    +F      G+ ID+
Sbjct: 247 SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQ 289



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 83/367 (22%), Positives = 170/367 (46%), Gaps = 6/367 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K     P + + YN  +      + F+    L  EM +  +  +  +YS
Sbjct: 60  YSKAISIFSRLKRSGFTP-DLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTXSYS 118

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY + G  +E   L+      
Sbjct: 119 TLLTMYVENKKFLEALSVFSEMREJKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 178

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   ++ N+V YN+++   GK  +   A
Sbjct: 179 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKA 238

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R +   +D IL+ T++  
Sbjct: 239 NNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQILFQTMIVA 298

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K     +PDN      ++I    G ++ A  +F +  + G   
Sbjct: 299 YERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVK 353

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           ++     +I  L K ++  ++V VF      G  PD  +   +L+     +  +    V 
Sbjct: 354 DITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVY 413

Query: 527 TCLQQAN 533
             +Q+  
Sbjct: 414 MEMQEVG 420



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 139/271 (51%), Gaps = 1/271 (0%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
            +M  + +  D + YS +I  +++   + +AI  F R+ ++G  PD V Y+A+++V+ K+
Sbjct: 33  QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKA 92

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
               E  SL     A+G  P+  ++S L  M+ E+  +     V  EM+ J    +L   
Sbjct: 93  KLFREARSLIGEMKAAGVMPNTXSYSTLLTMYVENKKFLEALSVFSEMREJKCLLDLTTC 152

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
           N +++  G+ G    A  LF  M + G+ P+  +   L+++YG A    +A+ L+  M+ 
Sbjct: 153 NIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR 212

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
                + + YN+++ +       E+A  L ++M+ S   +P++ +Y+ +++I+G  G +D
Sbjct: 213 KNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ-SRGIEPNSITYSTIISIWGKVGKLD 271

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
            A  LF+++   G+ I+ +    +I    +A
Sbjct: 272 RAAMLFQKLRSSGIEIDQILFQTMIVAYERA 302



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 125/263 (47%), Gaps = 1/263 (0%)

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
           + GL PD  TYS ++  + K G  +  LS  ++        D + +S L ++  +  DY 
Sbjct: 2   QRGLSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               +   +K  G  P+LV YN ++   GKA     ARSL  EM  +G+ P+  + + L+
Sbjct: 62  KAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTXSYSTLL 121

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
            +Y + +   +AL ++  MRE K  +D    N ++++   +G+ +EA++LF  M+     
Sbjct: 122 TMYVENKKFLEALSVFSEMREJKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG-I 180

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
           +P+  SY  +L +YG       AI LF  M    +  NV+    ++   GK    +    
Sbjct: 181 EPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 490 VFGVSIDRGVKPDDRLCGCLLSV 512
           +      RG++P+      ++S+
Sbjct: 241 LIQEMQSRGIEPNSITYSTIISI 263



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 97/247 (39%), Gaps = 36/247 (14%)

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G  PD   +S L   FG+ G +D     LQ+M+   V  +LV+Y+ L+E   K      A
Sbjct: 4   GLSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            S+F  +  SG TP                                   D + YN ++N+
Sbjct: 64  ISIFSRLKRSGFTP-----------------------------------DLVAYNAMINV 88

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
                L  EA  L  +MK +    P+  SY+ +L +Y        A+ +F EM EJ   +
Sbjct: 89  FGKAKLFREARSLIGEMKAAG-VMPNTXSYSTLLTMYVENKKFLEALSVFSEMREJKCLL 147

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           ++  C  +I   G+     +  ++F      G++P+      LL V    E   +   + 
Sbjct: 148 DLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLF 207

Query: 527 TCLQQAN 533
             +Q+ N
Sbjct: 208 RLMQRKN 214



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 88/191 (46%), Gaps = 3/191 (1%)

Query: 355 ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
           + GL+PD  T + LI  +GK      AL   ++M +++ P D +LY+ L+ +   +    
Sbjct: 2   QRGLSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
           +A  +F  +K S +  PD  +Y AM+N++G       A  L  EM   GV  N    + L
Sbjct: 62  KAISIFSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTXSYSTL 120

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN- 533
           +    + ++  + + VF    +     D   C  ++ V      +++  K+   +++   
Sbjct: 121 LTMYVENKKFLEALSVFSEMREJKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180

Query: 534 -PKLVAFLNLI 543
            P +V++  L+
Sbjct: 181 EPNVVSYNTLL 191


>gi|297839237|ref|XP_002887500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333341|gb|EFH63759.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 989

 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/259 (30%), Positives = 133/259 (51%), Gaps = 5/259 (1%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D + Y+ +I    +  L ++A+  F+ M   G  PDE TY++++ + A    V++   + 
Sbjct: 511 DVLEYNVMIKAYGKAKLHEKALSIFKGMKNQGTWPDECTYNSLIQMLAGVDLVDDAQRIL 570

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
              + SG KP    ++ L   +   G       + + MK  GV+PN VVY +L+    ++
Sbjct: 571 AEMLDSGCKPGCKTYAALIASYVRLGLLSDAVDLYEAMKKTGVKPNEVVYGSLINGFAES 630

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G    A   F  M E G+  +   LT+LIK Y K    ++A  ++++M+++    D    
Sbjct: 631 GMVEEAIQYFKLMEEHGVQSNHIVLTSLIKAYSKVGCLEEARRVYDKMKDSGGGPDVAAS 690

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           N++L++CAD+G+V EAE +F D++    C  D  S+  M+ +Y   G +D AIE+ EEM 
Sbjct: 691 NSMLSLCADLGIVSEAESIFNDLREKGTC--DVISFATMMYLYKGMGMLDEAIEVAEEMR 748

Query: 461 ELGVAINVMGCTCLIQCLG 479
           E G+   +  CT   Q L 
Sbjct: 749 ESGL---LRDCTSFNQVLA 764



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 89/361 (24%), Positives = 167/361 (46%), Gaps = 50/361 (13%)

Query: 209 LANEMVSNEIELDNITYSTII-TCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           L +EM+ + + +D +T++T+I TC    +L  EA    ++M + G+ PD  TY+ +L ++
Sbjct: 324 LFSEMLKSGVPIDTVTFNTMIHTCGTHGHL-SEAESLLKKMEEKGISPDTKTYNILLSLH 382

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
           A +G +E  L  Y      G  PD +    +  +  +         V+ EM    ++ + 
Sbjct: 383 ADAGDIEAALKYYRNIRKVGLFPDTVTHRAVLHILCQRKMVAEAEAVMAEMDRNSIRIDE 442

Query: 328 VVYNTLLEAMGKAGKPGLARSLF------------------DEMVESGLTPDEKTL---- 365
                +++     G  G A++LF                  D   E GL  + +T+    
Sbjct: 443 HSVPVIMQMYVNEGLVGQAKALFERFQLDCVLSSTTLAAVMDVYAEKGLWVEAETVFYGK 502

Query: 366 -------------TALIKIYGKARWAKDALELWERMR-ENKWPMDFILYNTLLNMCADIG 411
                          +IK YGKA+  + AL +++ M+ +  WP D   YN+L+ M A + 
Sbjct: 503 RNMTGQRNDVLEYNVMIKAYGKAKLHEKALSIFKGMKNQGTWP-DECTYNSLIQMLAGVD 561

Query: 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC 471
           LV++A+R+  +M L   CKP   +Y A++  Y   G + +A++L+E M + GV  N +  
Sbjct: 562 LVDDAQRILAEM-LDSGCKPGCKTYAALIASYVRLGLLSDAVDLYEAMKKTGVKPNEVVY 620

Query: 472 TCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ 531
             LI    ++  +++ ++ F +  + GV+ +       + + SL +    VG    CL++
Sbjct: 621 GSLINGFAESGMVEEAIQYFKLMEEHGVQSNH------IVLTSLIKAYSKVG----CLEE 670

Query: 532 A 532
           A
Sbjct: 671 A 671



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 151/304 (49%), Gaps = 4/304 (1%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           ++  I+   LFP +T+ +   +  L   +     E +  EM  N I +D  +   I+   
Sbjct: 394 YYRNIRKVGLFP-DTVTHRAVLHILCQRKMVAEAEAVMAEMDRNSIRIDEHSVPVIMQMY 452

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK-VEEVLSLYERGVASGWKPD 291
               L  +A   FER ++   +    T +A++DVYA+ G  VE     Y +   +G + D
Sbjct: 453 VNEGLVGQAKALFER-FQLDCVLSSTTLAAVMDVYAEKGLWVEAETVFYGKRNMTGQRND 511

Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
            + ++V+ K +G++  ++    + + MK+ G  P+   YN+L++ +        A+ +  
Sbjct: 512 VLEYNVMIKAYGKAKLHEKALSIFKGMKNQGTWPDECTYNSLIQMLAGVDLVDDAQRILA 571

Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411
           EM++SG  P  KT  ALI  Y +     DA++L+E M++     + ++Y +L+N  A+ G
Sbjct: 572 EMLDSGCKPGCKTYAALIASYVRLGLLSDAVDLYEAMKKTGVKPNEVVYGSLINGFAESG 631

Query: 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC 471
           +VEEA + F+ M+     + ++   T+++  Y   G ++ A  ++++M + G   +V   
Sbjct: 632 MVEEAIQYFKLME-EHGVQSNHIVLTSLIKAYSKVGCLEEARRVYDKMKDSGGGPDVAAS 690

Query: 472 TCLI 475
             ++
Sbjct: 691 NSML 694



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 137/289 (47%), Gaps = 2/289 (0%)

Query: 165 KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNIT 224
           K  +K+   F  +K+Q  +P E   YN  ++ L         +++  EM+ +  +    T
Sbjct: 526 KLHEKALSIFKGMKNQGTWPDECT-YNSLIQMLAGVDLVDDAQRILAEMLDSGCKPGCKT 584

Query: 225 YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
           Y+ +I    R  L  +A++ +E M KTG+ P+EV Y ++++ +A+SG VEE +  ++   
Sbjct: 585 YAALIASYVRLGLLSDAVDLYEAMKKTGVKPNEVVYGSLINGFAESGMVEEAIQYFKLME 644

Query: 285 ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344
             G + + I  + L K + + G  +  R V  +MK  G  P++   N++L      G   
Sbjct: 645 EHGVQSNHIVLTSLIKAYSKVGCLEEARRVYDKMKDSGGGPDVAASNSMLSLCADLGIVS 704

Query: 345 LARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
            A S+F+++ E G T D  +   ++ +Y       +A+E+ E MRE+    D   +N +L
Sbjct: 705 EAESIFNDLREKG-TCDVISFATMMYLYKGMGMLDEAIEVAEEMRESGLLRDCTSFNQVL 763

Query: 405 NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAI 453
              A  G + E   LF +M +      D  ++  +  +   GG    A+
Sbjct: 764 ACYAADGQLRECCELFHEMLVERKLLLDWGTFKTLFTLLKKGGVPSEAV 812



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/292 (22%), Positives = 130/292 (44%), Gaps = 9/292 (3%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           T++T+I    +    ++A   F  M K+G+  D VT++ ++      G + E  SL ++ 
Sbjct: 304 TFNTLIDLYGKAGRLNDAANLFSEMLKSGVPIDTVTFNTMIHTCGTHGHLSEAESLLKKM 363

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
              G  PD   +++L  +  ++GD +      + ++ +G+ P+ V +  +L  + +    
Sbjct: 364 EEKGISPDTKTYNILLSLHADAGDIEAALKYYRNIRKVGLFPDTVTHRAVLHILCQRKMV 423

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
             A ++  EM  + +  DE ++  ++++Y        A  L+ER +     +D +L +T 
Sbjct: 424 AEAEAVMAEMDRNSIRIDEHSVPVIMQMYVNEGLVGQAKALFERFQ-----LDCVLSSTT 478

Query: 404 LNMCADI----GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           L    D+    GL  EAE +F   +     + D   Y  M+  YG     + A+ +F+ M
Sbjct: 479 LAAVMDVYAEKGLWVEAETVFYGKRNMTGQRNDVLEYNVMIKAYGKAKLHEKALSIFKGM 538

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
              G   +      LIQ L     +DD  R+    +D G KP  +    L++
Sbjct: 539 KNQGTWPDECTYNSLIQMLAGVDLVDDAQRILAEMLDSGCKPGCKTYAALIA 590



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 89/454 (19%), Positives = 176/454 (38%), Gaps = 94/454 (20%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           W +    F + +S   +    I YN+ +++L    ++  +     EM  N +   N TY 
Sbjct: 119 WDRVLRVFRFFQSHQSYVPNVIHYNIVLRALGRAGKWDELRLCWIEMAHNGVLPTNNTYG 178

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV---------- 276
            ++    +  L  EA+ W + M +    PDEVT + ++ V+  SG+ +            
Sbjct: 179 MLVDVYGKAGLVKEALLWIKHMGQRMHFPDEVTMATVVRVFKNSGEFDRADRFFKGWCAG 238

Query: 277 --------------------------------LSLYERGV----------ASGWKPDP-- 292
                                           + L++ G           ASG    P  
Sbjct: 239 KVNLDDLDLDSIDDFPKNGSAQSPVNLKQFLSMELFKVGARNPIEKSLHFASGSDSSPRK 298

Query: 293 ----IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348
                 F+ L  ++G++G  +    +  EM   GV  + V +NT++   G  G    A S
Sbjct: 299 PRLTSTFNTLIDLYGKAGRLNDAANLFSEMLKSGVPIDTVTFNTMIHTCGTHGHLSEAES 358

Query: 349 LFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCA 408
           L  +M E G++PD KT   L+ ++  A   + AL+ +  +R+     D + +  +L++  
Sbjct: 359 LLKKMEEKGISPDTKTYNILLSLHADAGDIEAALKYYRNIRKVGLFPDTVTHRAVLHILC 418

Query: 409 DIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM--------- 459
              +V EAE +  +M   +  + D +S   ++ +Y + G V  A  LFE           
Sbjct: 419 QRKMVAEAEAVMAEMD-RNSIRIDEHSVPVIMQMYVNEGLVGQAKALFERFQLDCVLSST 477

Query: 460 ---------SELGVAI-----------------NVMGCTCLIQCLGKARRIDDLVRVFGV 493
                    +E G+ +                 +V+    +I+  GKA+  +  + +F  
Sbjct: 478 TLAAVMDVYAEKGLWVEAETVFYGKRNMTGQRNDVLEYNVMIKAYGKAKLHEKALSIFKG 537

Query: 494 SIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVIT 527
             ++G  PD+     L+ +++  +  +D  +++ 
Sbjct: 538 MKNQGTWPDECTYNSLIQMLAGVDLVDDAQRILA 571



 Score = 62.8 bits (151), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 105/245 (42%), Gaps = 12/245 (4%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D I+++T++   K   + DEAIE  E M ++GL+ D  +++ +L  YA  G++ E   L+
Sbjct: 720 DVISFATMMYLYKGMGMLDEAIEVAEEMRESGLLRDCTSFNQVLACYAADGQLRECCELF 779

Query: 281 -----ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLE 335
                ER +   W      F++L K    S     ++    E K L       +  TL  
Sbjct: 780 HEMLVERKLLLDWGTFKTLFTLLKKGGVPSEAVAQLQTAYNEAKPLATP---AITATLFS 836

Query: 336 AMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPM 395
           AMG       A     E+    +  +     A+I  Y  +     AL+ + RM+E     
Sbjct: 837 AMGLYA---YALESCQELTRDEIPREHYAYNAVIYTYSASGDIDMALKTYMRMQEKGLEP 893

Query: 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIEL 455
           D +    L+ +    G+VE  +R+   +   +  +P+   + A+ + Y S    D A  +
Sbjct: 894 DVVTQAYLVGIYGKAGMVEGVKRVHSRLTFGE-LEPNQSLFKAVRDAYVSANRQDLADVV 952

Query: 456 FEEMS 460
            +EMS
Sbjct: 953 KKEMS 957



 Score = 46.6 bits (109), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 51/108 (47%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
            E+  +EI  ++  Y+ +I         D A++ + RM + GL PD VT + ++ +Y K+
Sbjct: 849 QELTRDEIPREHYAYNAVIYTYSASGDIDMALKTYMRMQEKGLEPDVVTQAYLVGIYGKA 908

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEM 318
           G VE V  ++ R      +P+   F  +   +  +   D    V +EM
Sbjct: 909 GMVEGVKRVHSRLTFGELEPNQSLFKAVRDAYVSANRQDLADVVKKEM 956


>gi|293330959|ref|NP_001169662.1| uncharacterized protein LOC100383543 [Zea mays]
 gi|224030695|gb|ACN34423.1| unknown [Zea mays]
 gi|414870691|tpg|DAA49248.1| TPA: hypothetical protein ZEAMMB73_502001 [Zea mays]
          Length = 756

 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 151/318 (47%), Gaps = 2/318 (0%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           +N +  + + P + +  N  +K+L    Q +    +  EM S+ +  D  T++T++    
Sbjct: 183 YNEMTDRGIQP-DVVTLNTLIKALCRAHQVRTAVLMLEEMSSHAVAPDETTFTTLMQGFI 241

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
                + A+    +M +TG  P  VT + +++ Y K G+VE+ L   ++ +A G++PD +
Sbjct: 242 EEGSIEAALRVKTKMMETGCSPTRVTVNVLINGYCKMGRVEDALGYIQKEIADGFEPDQV 301

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
            ++       ++G       V+  M   G  P++  YNT++  + K G+   A+ + ++M
Sbjct: 302 TYNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQM 361

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
           V+ G  PD  T   LI         ++AL+L   +       D   +N L+N    +G  
Sbjct: 362 VDRGCLPDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDP 421

Query: 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTC 473
               RLFE+MK S  C PD  +Y  +++   S G + NA++L +EM   G   + +    
Sbjct: 422 HLGIRLFEEMK-SSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNT 480

Query: 474 LIQCLGKARRIDDLVRVF 491
           +I  L K  RI++   VF
Sbjct: 481 IIDALCKQMRIEEAEEVF 498



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 88/364 (24%), Positives = 155/364 (42%), Gaps = 21/364 (5%)

Query: 143 RAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQ 202
           R +T +  Q   E AL +LNS             +  ++  P   ++  +  K L     
Sbjct: 58  RLLTALREQADPEAALQMLNS------------ALAREDFAPSRAVYEEIIQK-LGTAGA 104

Query: 203 FQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKT-GLMPDEVTYS 261
           F L+E L  EM     E       + +    R   FD+A++       T G+  D   Y+
Sbjct: 105 FDLMEGLVREMRREGHEAGAGVVRSFVESYARLRRFDDAVDLVRNQLNTFGVQADTAVYN 164

Query: 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
            +L+V A+  +++ + S+Y      G +PD +  + L K    +        +L+EM S 
Sbjct: 165 HLLNVLAEGSRMKLLESVYNEMTDRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSH 224

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
            V P+   + TL++   + G    A  +  +M+E+G +P   T+  LI  Y K    +DA
Sbjct: 225 AVAPDETTFTTLMQGFIEEGSIEAALRVKTKMMETGCSPTRVTVNVLINGYCKMGRVEDA 284

Query: 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
           L   ++   + +  D + YNT ++     G V  A ++  D+ L +   PD ++Y  ++N
Sbjct: 285 LGYIQKEIADGFEPDQVTYNTFVHCLCQNGHVSHALKVM-DLMLQEGHDPDVFTYNTVIN 343

Query: 442 IYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID---DLVRVFGVSIDRG 498
                G +D A  +  +M + G   +      LI  L    R++   DL R   V   +G
Sbjct: 344 CLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALDLARELTV---KG 400

Query: 499 VKPD 502
           + PD
Sbjct: 401 LSPD 404



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 118/246 (47%), Gaps = 4/246 (1%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITC 231
            F  +KS    P E + YN+ +  L   G+    ++ L  EM SN      +TY+TII  
Sbjct: 427 LFEEMKSSGCAPDE-VTYNILIDHLCSMGKLVNALD-LLKEMESNGCPRSTVTYNTIIDA 484

Query: 232 AKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291
             +    +EA E F++M   G+    VT++ ++D   K+ ++++   L E+ V  G +P 
Sbjct: 485 LCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPS 544

Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
            I ++ +   + + GD      +L+ M + G + ++V Y TL+  + KAG+  +A  L  
Sbjct: 545 NITYNSILTHYCKQGDLKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLR 604

Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL-NMCADI 410
            M   G+ P  K    +I+   +    +DAL L+  M E   P D + Y  +   +C   
Sbjct: 605 GMRIKGIRPTPKAYNPVIQSLFRRNNLRDALSLFREMTEVGEPPDALTYKIVFRGLCRGG 664

Query: 411 GLVEEA 416
           G ++EA
Sbjct: 665 GPIKEA 670



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 106/257 (41%), Gaps = 2/257 (0%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           +L  EM S+    D +TY+ +I           A++  + M   G     VTY+ I+D  
Sbjct: 426 RLFEEMKSSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNTIIDAL 485

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            K  ++EE   ++++  A G     + F+ L     ++   D    ++++M   G+QP+ 
Sbjct: 486 CKQMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPSN 545

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
           + YN++L    K G    A  + + M  +G   D  T   LI    KA   + AL+L   
Sbjct: 546 ITYNSILTHYCKQGDLKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRG 605

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML-NIYGSG 446
           MR          YN ++        + +A  LF +M       PD  +Y  +   +   G
Sbjct: 606 MRIKGIRPTPKAYNPVIQSLFRRNNLRDALSLFREMTEVGE-PPDALTYKIVFRGLCRGG 664

Query: 447 GNVDNAIELFEEMSELG 463
           G +  A +   EM   G
Sbjct: 665 GPIKEAFDFLVEMVNKG 681


>gi|22093673|dbj|BAC06967.1| crp1-like protein [Oryza sativa Japonica Group]
 gi|50510048|dbj|BAD30673.1| crp1-like protein [Oryza sativa Japonica Group]
          Length = 912

 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/343 (24%), Positives = 174/343 (50%), Gaps = 13/343 (3%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           + Y+ ++        +D      E M ++G+ PDE T+++++ ++A  G  +    L  +
Sbjct: 474 VEYNVMVKAYGAAKRYDRVSPLLEHMNESGISPDECTFNSLVQMFATGGYPQRAKKLLGK 533

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
              +G+KP    ++        +       Y+  EMK+ GV+PN+VVY  L++   + G+
Sbjct: 534 MKYAGFKPKCETYAAAITTLSRNYLVSEAIYLYNEMKASGVEPNVVVYGVLIDTFAETGQ 593

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
              A    + M ESG+ P++  LT+LIK Y KA   K+A +L+ RM+      D +  N+
Sbjct: 594 LEEALHYNNLMEESGIAPNQIVLTSLIKAYSKANCWKEAQDLYSRMKSMDGGPDIVASNS 653

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
           +LN+ A++G+V + + +F+ ++ ++  + D+ SYT+M+++Y + G ++ ++ +  ++   
Sbjct: 654 MLNLYANLGMVTKVKEIFDCLRRNN--QADDVSYTSMISLYKNMGLLNESVRVAHDLQNS 711

Query: 463 GVAINVMGCTCLIQCL---GKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETS 519
           G+  +      ++ C    GK R   +LV+      +  + PD    G + S++   + +
Sbjct: 712 GLLSDCASYNAVMACFVAKGKLRECAELVQQMQ---EGNILPDASTFGMIFSIMKKIQIA 768

Query: 520 -EDVGKVITCLQ----QANPKLVAFLNLIEDNSTGFENIKEEF 557
            E+V ++ +        ++  ++AFL LI        NI E++
Sbjct: 769 PEEVSQLQSAYNDNRSSSSQAVIAFLFLIAGMHAAALNICEKY 811



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 77/372 (20%), Positives = 153/372 (41%), Gaps = 19/372 (5%)

Query: 142 LRAITEIPHQPTRENALLILNSL-KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFG 200
           +RA    P + +    + IL  + ++   +  F NW   +     E  F ++   +L  G
Sbjct: 177 MRARGVAPDEVSMSTFVRILKDVGRYSDAATLFDNWCNGR----FEVGFIDLDYSALDSG 232

Query: 201 RQFQ-LIEQLANEMVSN----------EIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
              Q L+E++ +  V +           I    +TY+T+I    +     +A++ F  M 
Sbjct: 233 GPMQFLLEEMCHGNVDDAGASGIQGVARIPKLAVTYNTMIDLYGKAGKLKDAMDMFMGMP 292

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
             G+  D  T++ +++++   G V+E  +L+   +  G  PD   F+V+  +F   GD +
Sbjct: 293 DYGVAADTCTFNTLINIFGSCGNVKEAEALFASMIVRGTNPDVKTFNVMMTLFASKGDVE 352

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
           G+      +  +G+  + V Y  +L  + +      A  +   ++ SG    E++L  ++
Sbjct: 353 GVLKHYYHIGKMGLSADTVSYGIVLRVLCERKMVHEAEDVIVGIMRSGTCVPEQSLPVVM 412

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
           K+Y        A   ++R       +    +  +++  A+ GL EEAE +F   +     
Sbjct: 413 KMYIDQGLLDKANAFFDRHCRGD-EVSSKTFAAIMDAFAERGLWEEAEHVFYSHR--GVR 469

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
           +     Y  M+  YG+    D    L E M+E G++ +      L+Q            +
Sbjct: 470 RRGIVEYNVMVKAYGAAKRYDRVSPLLEHMNESGISPDECTFNSLVQMFATGGYPQRAKK 529

Query: 490 VFGVSIDRGVKP 501
           + G     G KP
Sbjct: 530 LLGKMKYAGFKP 541



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/304 (19%), Positives = 124/304 (40%), Gaps = 33/304 (10%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L NEM ++ +E + + Y  +I         +EA+ +   M ++G+ P+++  ++++  Y+
Sbjct: 565 LYNEMKASGVEPNVVVYGVLIDTFAETGQLEEALHYNNLMEESGIAPNQIVLTSLIKAYS 624

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           K+   +E   LY R  +    PD +A + +  ++   G    ++ +   ++    Q + V
Sbjct: 625 KANCWKEAQDLYSRMKSMDGGPDIVASNSMLNLYANLGMVTKVKEIFDCLRR-NNQADDV 683

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            Y +++      G    +  +  ++  SGL  D  +  A++  +      ++  EL ++M
Sbjct: 684 SYTSMISLYKNMGLLNESVRVAHDLQNSGLLSDCASYNAVMACFVAKGKLRECAELVQQM 743

Query: 389 RENKWPMDFILYNTLLNMCADIGL----VEEAERLFEDMKLSD----------------- 427
           +E     D   +  + ++   I +    V + +  + D + S                  
Sbjct: 744 QEGNILPDASTFGMIFSIMKKIQIAPEEVSQLQSAYNDNRSSSSQAVIAFLFLIAGMHAA 803

Query: 428 -------YCKP----DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
                  Y KP    D  +      +Y S G VD A  LF +M ELG+  +      L  
Sbjct: 804 ALNICEKYMKPVLTIDQCACNVAFKVYASCGEVDKAFSLFMQMHELGLKPDTATYIHLTT 863

Query: 477 CLGK 480
           C G+
Sbjct: 864 CYGE 867



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/248 (21%), Positives = 95/248 (38%), Gaps = 45/248 (18%)

Query: 312 RYVLQEMKSL-GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTP-DEKTLTALI 369
           R +L  M++L G  P+ + Y  +L  +  A + G  R ++  M   G  P   +   AL 
Sbjct: 99  RDLLDRMRALPGYAPSAIHYGVVLRHLAGARRWGELRRVWARMAREGAPPPTNQAYAALA 158

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFE-------- 421
               KA  A+D+L L   MR      D +  +T + +  D+G   +A  LF+        
Sbjct: 159 DALAKAGHARDSLLLLRHMRARGVAPDEVSMSTFVRILKDVGRYSDAATLFDNWCNGRFE 218

Query: 422 ------DMKLSDYCKPDNY-----------------------------SYTAMLNIYGSG 446
                 D    D   P  +                             +Y  M+++YG  
Sbjct: 219 VGFIDLDYSALDSGGPMQFLLEEMCHGNVDDAGASGIQGVARIPKLAVTYNTMIDLYGKA 278

Query: 447 GNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLC 506
           G + +A+++F  M + GVA +      LI   G    + +   +F   I RG  PD +  
Sbjct: 279 GKLKDAMDMFMGMPDYGVAADTCTFNTLINIFGSCGNVKEAEALFASMIVRGTNPDVKTF 338

Query: 507 GCLLSVVS 514
             ++++ +
Sbjct: 339 NVMMTLFA 346



 Score = 43.5 bits (101), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 61/159 (38%), Gaps = 2/159 (1%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN  M       + +   +L  +M    I  D  T+  I +  K+  +  E +   +  Y
Sbjct: 720 YNAVMACFVAKGKLRECAELVQQMQEGNILPDASTFGMIFSIMKKIQIAPEEVSQLQSAY 779

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
                       A L + A  G     L++ E+ +      D  A +V  K++   G+ D
Sbjct: 780 NDNRSSSSQAVIAFLFLIA--GMHAAALNICEKYMKPVLTIDQCACNVAFKVYASCGEVD 837

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348
               +  +M  LG++P+   Y  L    G+ G PG  RS
Sbjct: 838 KAFSLFMQMHELGLKPDTATYIHLTTCYGEYGMPGGLRS 876


>gi|255661170|gb|ACU25754.1| pentatricopeptide repeat-containing protein [Junellia spathulata]
          Length = 426

 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/283 (31%), Positives = 146/283 (51%), Gaps = 7/283 (2%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D  TYST+IT   +  LFD A+ W ++M +  +  D V YS ++++  K     + +S++
Sbjct: 8   DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
            R   SG+ PD +A++ +  +FG++  +   R ++ EM++ GV PN   Y+TLL    + 
Sbjct: 68  SRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVEN 127

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
            K   A S+F EM E     D  T   +I +YG+   AK+A +L+  MR+     + + Y
Sbjct: 128 KKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSY 187

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           NTLL +  D  L  EA  LF  M+  +  + +  +Y +M+ IYG     + A  L +EM 
Sbjct: 188 NTLLRVYGDAELFGEAIHLFRLMQRKN-IEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 246

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVF------GVSIDR 497
             G+  N +  + +I   GK  ++D    +F      GV ID+
Sbjct: 247 NRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQ 289



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 82/366 (22%), Positives = 169/366 (46%), Gaps = 6/366 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K     P + + YN  +      + F+    L +EM +  +  +  +YS
Sbjct: 60  YSKAISIFSRLKRSGFTP-DLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYS 118

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY + G  +E   L+      
Sbjct: 119 TLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 178

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   ++ N+V YN+++   GK  +   A
Sbjct: 179 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKA 238

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R +   +D +LY T++  
Sbjct: 239 NNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVA 298

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K     +PDN      ++I    G ++ A  +F +  + G   
Sbjct: 299 YERAGLVAHAKRLLHELK-----RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVK 353

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           ++     +I    K ++  ++V VF      G  PD  +   +L+        +    V 
Sbjct: 354 DITVFERMIHLFSKYKKYGNVVVVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVY 413

Query: 527 TCLQQA 532
             +Q+ 
Sbjct: 414 MEMQEV 419



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 138/271 (50%), Gaps = 1/271 (0%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
            +M  + +  D + YS +I  +++   + +AI  F R+ ++G  PD V Y+A+++V+ K+
Sbjct: 33  QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKA 92

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
               E  SL      +G  P+  ++S L  M+ E+  +     V  EM+ +    +L   
Sbjct: 93  KLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTC 152

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
           N +++  G+ G    A  LF  M + G+ P+  +   L+++YG A    +A+ L+  M+ 
Sbjct: 153 NIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR 212

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
                + + YN+++ +       E+A  L ++M+ +   +P++ +Y+ +++I+G  G +D
Sbjct: 213 KNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ-NRGIEPNSITYSTIISIWGKVGKLD 271

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
            A  LF+++   GV I+ +    +I    +A
Sbjct: 272 RAAMLFQKLRSSGVDIDQVLYQTMIVAYERA 302



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 125/261 (47%), Gaps = 1/261 (0%)

Query: 252 GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGI 311
            L PD  TYS ++  + K G  +  LS  ++        D + +S L ++  +  DY   
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 312 RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371
             +   +K  G  P+LV YN ++   GKA     ARSL  EM  +G+TP+  + + L+ +
Sbjct: 64  ISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTM 123

Query: 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
           Y + +   +AL ++  MRE K  +D    N ++++   +G+ +EA++LF  M+     +P
Sbjct: 124 YVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG-IEP 182

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           +  SY  +L +YG       AI LF  M    +  NV+    ++   GK    +    + 
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 242

Query: 492 GVSIDRGVKPDDRLCGCLLSV 512
               +RG++P+      ++S+
Sbjct: 243 QEMQNRGIEPNSITYSTIISI 263



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/242 (21%), Positives = 105/242 (43%), Gaps = 5/242 (2%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           P+  +    L +    + + ++   F  ++ +N+     + YN  M       + +    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNI-EQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  EM +  IE ++ITYSTII+   +    D A   F+++  +G+  D+V Y  ++  Y 
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYE 300

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           ++G V       +R +    +PD I   +   +   +G  +   +V ++    G   ++ 
Sbjct: 301 RAGLVAHA----KRLLHELKRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDIT 356

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
           V+  ++    K  K G    +FD+M   G  PD   +  ++  YGK      A +++  M
Sbjct: 357 VFERMIHLFSKYKKYGNVVVVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVYMEM 416

Query: 389 RE 390
           +E
Sbjct: 417 QE 418



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 87/191 (45%), Gaps = 3/191 (1%)

Query: 355 ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
           E  L+PD  T + LI  +GK      AL   ++M +++ P D +LY+ L+ +   +    
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
           +A  +F  +K S +  PD  +Y AM+N++G       A  L  EM   GV  N    + L
Sbjct: 62  KAISIFSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN- 533
           +    + ++  + + VF    +     D   C  ++ V      +++  K+   +++   
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180

Query: 534 -PKLVAFLNLI 543
            P +V++  L+
Sbjct: 181 EPNVVSYNTLL 191


>gi|255661154|gb|ACU25746.1| pentatricopeptide repeat-containing protein [Verbena intermedia]
          Length = 426

 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/283 (31%), Positives = 146/283 (51%), Gaps = 7/283 (2%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D  TYST+IT   +  LFD A+ W ++M +  +  D V YS ++++  K     + +S++
Sbjct: 8   DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYXKAISIF 67

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
            R   SG+ PD +A++ +  +FG++  +   R ++ EM++ GV PN   Y+TLL    + 
Sbjct: 68  SRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVEN 127

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
            K   A S+F EM E     D  T   +I +YG+   AK+A +L+  MR+     + + Y
Sbjct: 128 KKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSY 187

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           NTLL +  D  L  EA  LF  M+  +  + +  +Y +M+ IYG     + A  L +EM 
Sbjct: 188 NTLLRVYGDAELFGEAIHLFRLMQRKN-IEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 246

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVF------GVSIDR 497
             G+  N +  + +I   GK  ++D    +F      GV ID+
Sbjct: 247 NRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSXGVDIDQ 289



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 82/366 (22%), Positives = 168/366 (45%), Gaps = 6/366 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K     P + + YN  +      + F+    L +EM +  +  +  +YS
Sbjct: 60  YXKAISIFSRLKRSGFTP-DLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYS 118

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY + G  +E   L+      
Sbjct: 119 TLLTMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 178

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   ++ N+V YN+++   GK  +   A
Sbjct: 179 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKA 238

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R     +D +LY T++  
Sbjct: 239 NNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSXGVDIDQVLYQTMIVA 298

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K     +PDN      ++I    G ++ A  +F +  + G   
Sbjct: 299 YERAGLVAHAKRLLHELK-----RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVK 353

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           ++     +I    K ++  ++V VF      G  PD  +   +L+        +    V 
Sbjct: 354 DITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVY 413

Query: 527 TCLQQA 532
             +Q+ 
Sbjct: 414 MEMQEV 419



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/271 (23%), Positives = 138/271 (50%), Gaps = 1/271 (0%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
            +M  + +  D + YS +I  +++   + +AI  F R+ ++G  PD V Y+A+++V+ K+
Sbjct: 33  QKMEQDRVPGDLVLYSNLIELSRKLCDYXKAISIFSRLKRSGFTPDLVAYNAMINVFGKA 92

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
               E  SL      +G  P+  ++S L  M+ E+  +     +  EM+ +    +L   
Sbjct: 93  KLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSIFAEMREIKCLLDLTTC 152

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
           N +++  G+ G    A  LF  M + G+ P+  +   L+++YG A    +A+ L+  M+ 
Sbjct: 153 NIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR 212

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
                + + YN+++ +       E+A  L ++M+ +   +P++ +Y+ +++I+G  G +D
Sbjct: 213 KNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ-NRGIEPNSITYSTIISIWGKVGKLD 271

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
            A  LF+++   GV I+ +    +I    +A
Sbjct: 272 RAAMLFQKLRSXGVDIDQVLYQTMIVAYERA 302



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 125/261 (47%), Gaps = 1/261 (0%)

Query: 252 GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGI 311
            L PD  TYS ++  + K G  +  LS  ++        D + +S L ++  +  DY   
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYXKA 63

Query: 312 RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371
             +   +K  G  P+LV YN ++   GKA     ARSL  EM  +G+TP+  + + L+ +
Sbjct: 64  ISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTM 123

Query: 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
           Y + +   +AL ++  MRE K  +D    N ++++   +G+ +EA++LF  M+     +P
Sbjct: 124 YVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG-IEP 182

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           +  SY  +L +YG       AI LF  M    +  NV+    ++   GK    +    + 
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 242

Query: 492 GVSIDRGVKPDDRLCGCLLSV 512
               +RG++P+      ++S+
Sbjct: 243 QEMQNRGIEPNSITYSTIISI 263



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/242 (21%), Positives = 104/242 (42%), Gaps = 5/242 (2%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           P+  +    L +    + + ++   F  ++ +N+     + YN  M       + +    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNI-EQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  EM +  IE ++ITYSTII+   +    D A   F+++   G+  D+V Y  ++  Y 
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSXGVDIDQVLYQTMIVAYE 300

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           ++G V       +R +    +PD I   +   +   +G  +   +V ++    G   ++ 
Sbjct: 301 RAGLVAHA----KRLLHELKRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDIT 356

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
           V+  ++    K  K G    +FD+M   G  PD   +  ++  YGK      A +++  M
Sbjct: 357 VFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVYMEM 416

Query: 389 RE 390
           +E
Sbjct: 417 QE 418



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 87/191 (45%), Gaps = 3/191 (1%)

Query: 355 ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
           E  L+PD  T + LI  +GK      AL   ++M +++ P D +LY+ L+ +   +    
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYX 61

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
           +A  +F  +K S +  PD  +Y AM+N++G       A  L  EM   GV  N    + L
Sbjct: 62  KAISIFSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN- 533
           +    + ++  + + +F    +     D   C  ++ V      +++  K+   +++   
Sbjct: 121 LTMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180

Query: 534 -PKLVAFLNLI 543
            P +V++  L+
Sbjct: 181 EPNVVSYNTLL 191


>gi|15240891|ref|NP_195731.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174092|sp|Q9LFC5.1|PP360_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g01110
 gi|6759434|emb|CAB69839.1| putative protein [Arabidopsis thaliana]
 gi|28973740|gb|AAO64186.1| unknown protein [Arabidopsis thaliana]
 gi|110736884|dbj|BAF00399.1| hypothetical protein [Arabidopsis thaliana]
 gi|332002917|gb|AED90300.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 729

 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 157/313 (50%), Gaps = 1/313 (0%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN  +  L    +++  +++  EM+ + +  D+ TY +++  A +     E  + F  M 
Sbjct: 308 YNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMR 367

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
              ++PD V +S+++ ++ +SG +++ L  +     +G  PD + +++L + +   G   
Sbjct: 368 SRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMIS 427

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               +  EM   G   ++V YNT+L  + K    G A  LF+EM E  L PD  TLT LI
Sbjct: 428 VAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILI 487

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
             + K    ++A+EL+++M+E +  +D + YNTLL+    +G ++ A+ ++ DM +S   
Sbjct: 488 DGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADM-VSKEI 546

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
            P   SY+ ++N   S G++  A  +++EM    +   VM C  +I+   ++    D   
Sbjct: 547 LPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGES 606

Query: 490 VFGVSIDRGVKPD 502
                I  G  PD
Sbjct: 607 FLEKMISEGFVPD 619



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 96/393 (24%), Positives = 174/393 (44%), Gaps = 16/393 (4%)

Query: 122 RDLKLFARKLNDCDNTEEAF--LRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKS 179
           R L + A K  D   TE+ F  +R+   +P      + + +        K+  +FN +K 
Sbjct: 344 RSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKE 403

Query: 180 QNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFD 239
             L P + + Y + ++         +   L NEM+     +D +TY+TI+    +  +  
Sbjct: 404 AGLIP-DNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLG 462

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           EA + F  M +  L PD  T + ++D + K G ++  + L+++      + D + ++ L 
Sbjct: 463 EADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLL 522

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
             FG+ GD D  + +  +M S  + P  + Y+ L+ A+   G    A  ++DEM+   + 
Sbjct: 523 DGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIK 582

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL-------NMCADIGL 412
           P      ++IK Y ++  A D     E+M    +  D I YNTL+       NM    GL
Sbjct: 583 PTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGL 642

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
           V++ E   E   L     PD ++Y ++L+ +     +  A  +  +M E GV  +    T
Sbjct: 643 VKKMEE--EQGGLV----PDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYT 696

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRL 505
           C+I        + +  R+    + RG  PDD+ 
Sbjct: 697 CMINGFVSQDNLTEAFRIHDEMLQRGFSPDDKF 729



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 137/281 (48%), Gaps = 1/281 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D +TY+T+I+      L +EA E    M   G  P   TY+ +++   K GK E    ++
Sbjct: 269 DIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVF 328

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
              + SG  PD   +  L     + GD      V  +M+S  V P+LV +++++    ++
Sbjct: 329 AEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRS 388

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G    A   F+ + E+GL PD    T LI+ Y +      A+ L   M +    MD + Y
Sbjct: 389 GNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTY 448

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           NT+L+      ++ EA++LF +M       PD+Y+ T +++ +   GN+ NA+ELF++M 
Sbjct: 449 NTILHGLCKRKMLGEADKLFNEMT-ERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMK 507

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
           E  + ++V+    L+   GK   ID    ++   + + + P
Sbjct: 508 EKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILP 548



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/258 (23%), Positives = 126/258 (48%), Gaps = 1/258 (0%)

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
           ++ + ++G+  +  T + +++   K GK+E+V +   +    G  PD + ++ L   +  
Sbjct: 223 YQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSS 282

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
            G  +    ++  M   G  P +  YNT++  + K GK   A+ +F EM+ SGL+PD  T
Sbjct: 283 KGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTT 342

Query: 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
             +L+    K     +  +++  MR      D + +++++++    G +++A   F  +K
Sbjct: 343 YRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVK 402

Query: 425 LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484
            +    PDN  YT ++  Y   G +  A+ L  EM + G A++V+    ++  L K + +
Sbjct: 403 EAGLI-PDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKML 461

Query: 485 DDLVRVFGVSIDRGVKPD 502
            +  ++F    +R + PD
Sbjct: 462 GEADKLFNEMTERALFPD 479



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 117/274 (42%), Gaps = 14/274 (5%)

Query: 216 NEIELDNITYSTIITCAKRCNLFD-------------EAIEWFERMYKTGLMPDEVTYSA 262
           + +E+ N   ST   C    ++FD             EA E F  +   G        +A
Sbjct: 146 SRLEIVNSLDSTFSNCGSNDSVFDLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNA 205

Query: 263 ILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG 322
           ++    + G VE    +Y+    SG   +    +++     + G  + +   L +++  G
Sbjct: 206 LIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKG 265

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382
           V P++V YNTL+ A    G    A  L + M   G +P   T   +I    K    + A 
Sbjct: 266 VYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAK 325

Query: 383 ELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNI 442
           E++  M  +    D   Y +LL      G V E E++F DM+  D   PD   +++M+++
Sbjct: 326 EVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVV-PDLVCFSSMMSL 384

Query: 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
           +   GN+D A+  F  + E G+  + +  T LIQ
Sbjct: 385 FTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQ 418


>gi|356518209|ref|XP_003527773.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Glycine max]
          Length = 1113

 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 101/372 (27%), Positives = 164/372 (44%), Gaps = 39/372 (10%)

Query: 166 FWQKSYFFFNWIKSQNLFP-METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNIT 224
           F +++   +  + S+ L P M+T  Y+  M +L   R    I  L  EM +  +  +  T
Sbjct: 207 FCKEALKVYKRMISEGLKPSMKT--YSALMVALGRRRDTGTIMDLLEEMETLGLRPNIYT 264

Query: 225 YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
           Y+  I    R    D+A    + M   G  PD VTY+ ++D    +GK+++   LY +  
Sbjct: 265 YTICIRVLGRAGRIDDAYGILKTMEDEGCGPDVVTYTVLIDALCAAGKLDKAKELYTKMR 324

Query: 285 ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK-- 342
           AS  KPD + +  L   FG  GD + ++    EM++ G  P++V Y  L+EA+ K+GK  
Sbjct: 325 ASSHKPDLVTYITLMSKFGNYGDLETVKRFWSEMEADGYAPDVVTYTILVEALCKSGKVD 384

Query: 343 ---------------PGL------------------ARSLFDEMVESGLTPDEKTLTALI 369
                          P L                  A  LF+ M   G+ P   +    I
Sbjct: 385 QAFDMLDVMRVRGIVPNLHTYNTLISGLLNLRRLDEALELFNNMESLGVAPTAYSYVLFI 444

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
             YGK    + AL+ +E+M++          N  L   A++G + EA+ +F D+      
Sbjct: 445 DYYGKLGDPEKALDTFEKMKKRGIMPSIAACNASLYSLAEMGRIREAKDIFNDIHNCGL- 503

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
            PD+ +Y  M+  Y   G +D A +L  EM   G   +++    LI  L KA R+D+  +
Sbjct: 504 SPDSVTYNMMMKCYSKAGQIDKATKLLTEMLSEGCEPDIIVVNSLIDTLYKAGRVDEAWQ 563

Query: 490 VFGVSIDRGVKP 501
           +FG   D  + P
Sbjct: 564 MFGRLKDLKLAP 575



 Score =  125 bits (315), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 77/279 (27%), Positives = 133/279 (47%), Gaps = 1/279 (0%)

Query: 224  TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
            TY+ ++    +    DE  E +  M   G  P+ +T++ I+    KS  + + L LY   
Sbjct: 825  TYNLLLDAHGKSKRIDELFELYNEMLCRGCKPNIITHNIIISALVKSNSINKALDLYYEI 884

Query: 284  VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
            ++  + P P  +  L     ++G  +    + +EM     +PN  +YN L+   GKAG  
Sbjct: 885  ISGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEMPDYQCKPNCAIYNILINGFGKAGNV 944

Query: 344  GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
             +A  LF  M++ G+ PD K+ T L++         DA+  +E ++      D + YN +
Sbjct: 945  NIACDLFKRMIKEGIRPDLKSYTILVECLFMTGRVDDAVHYFEELKLTGLDPDTVSYNLM 1004

Query: 404  LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
            +N       +EEA  LF +MK +    P+ Y+Y A++  +G+ G VD A ++FEE+  +G
Sbjct: 1005 INGLGKSRRLEEALSLFSEMK-NRGISPELYTYNALILHFGNAGMVDQAGKMFEELQFMG 1063

Query: 464  VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            +  NV     LI+   K+   D    VF   +  G  P+
Sbjct: 1064 LEPNVFTYNALIRGHSKSGNKDRAFSVFKKMMIVGCSPN 1102



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/308 (27%), Positives = 141/308 (45%), Gaps = 4/308 (1%)

Query: 197 LRFGRQFQLIEQLA---NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGL 253
           L F R    +E +A   + M    I  +  TY TI           +A     +M + G 
Sbjct: 129 LEFLRVHGRVEDMAFVFDLMQKQVINRNPNTYLTIFKALSIKGGIRQAPFALGKMRQAGF 188

Query: 254 MPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRY 313
           + +  +Y+ ++    + G  +E L +Y+R ++ G KP    +S L    G   D   I  
Sbjct: 189 VLNAYSYNGLIYFLLQPGFCKEALKVYKRMISEGLKPSMKTYSALMVALGRRRDTGTIMD 248

Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYG 373
           +L+EM++LG++PN+  Y   +  +G+AG+   A  +   M + G  PD  T T LI    
Sbjct: 249 LLEEMETLGLRPNIYTYTICIRVLGRAGRIDDAYGILKTMEDEGCGPDVVTYTVLIDALC 308

Query: 374 KARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDN 433
            A     A EL+ +MR +    D + Y TL++   + G +E  +R + +M+   Y  PD 
Sbjct: 309 AAGKLDKAKELYTKMRASSHKPDLVTYITLMSKFGNYGDLETVKRFWSEMEADGY-APDV 367

Query: 434 YSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGV 493
            +YT ++      G VD A ++ + M   G+  N+     LI  L   RR+D+ + +F  
Sbjct: 368 VTYTILVEALCKSGKVDQAFDMLDVMRVRGIVPNLHTYNTLISGLLNLRRLDEALELFNN 427

Query: 494 SIDRGVKP 501
               GV P
Sbjct: 428 MESLGVAP 435



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 151/293 (51%), Gaps = 2/293 (0%)

Query: 176  WIKSQNLFPMETIF-YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKR 234
            +++ +N      IF YN+ + +    ++   + +L NEM+    + + IT++ II+   +
Sbjct: 811  FVEMKNAGCCPNIFTYNLLLDAHGKSKRIDELFELYNEMLCRGCKPNIITHNIIISALVK 870

Query: 235  CNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIA 294
             N  ++A++ +  +      P   TY  ++    K+G+ EE + ++E       KP+   
Sbjct: 871  SNSINKALDLYYEIISGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEMPDYQCKPNCAI 930

Query: 295  FSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMV 354
            +++L   FG++G+ +    + + M   G++P+L  Y  L+E +   G+   A   F+E+ 
Sbjct: 931  YNILINGFGKAGNVNIACDLFKRMIKEGIRPDLKSYTILVECLFMTGRVDDAVHYFEELK 990

Query: 355  ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
             +GL PD  +   +I   GK+R  ++AL L+  M+      +   YN L+    + G+V+
Sbjct: 991  LTGLDPDTVSYNLMINGLGKSRRLEEALSLFSEMKNRGISPELYTYNALILHFGNAGMVD 1050

Query: 415  EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
            +A ++FE+++     +P+ ++Y A++  +   GN D A  +F++M  +G + N
Sbjct: 1051 QAGKMFEELQFMGL-EPNVFTYNALIRGHSKSGNKDRAFSVFKKMMIVGCSPN 1102



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 151/316 (47%), Gaps = 10/316 (3%)

Query: 192 VTMKSLRFGR--QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           +T+ S +FG     + +++  +EM ++    D +TY+ ++    +    D+A +  + M 
Sbjct: 336 ITLMS-KFGNYGDLETVKRFWSEMEADGYAPDVVTYTILVEALCKSGKVDQAFDMLDVMR 394

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
             G++P+  TY+ ++       +++E L L+    + G  P   ++ +    +G+ GD +
Sbjct: 395 VRGIVPNLHTYNTLISGLLNLRRLDEALELFNNMESLGVAPTAYSYVLFIDYYGKLGDPE 454

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
                 ++MK  G+ P++   N  L ++ + G+   A+ +F+++   GL+PD  T   ++
Sbjct: 455 KALDTFEKMKKRGIMPSIAACNASLYSLAEMGRIREAKDIFNDIHNCGLSPDSVTYNMMM 514

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLF---EDMKLS 426
           K Y KA     A +L   M       D I+ N+L++     G V+EA ++F   +D+KL+
Sbjct: 515 KCYSKAGQIDKATKLLTEMLSEGCEPDIIVVNSLIDTLYKAGRVDEAWQMFGRLKDLKLA 574

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
               P   +Y  ++   G  G +  A++LF  M E G   N +    L+ CL K   +D 
Sbjct: 575 ----PTVVTYNILITGLGKEGKLLKALDLFGSMKESGCPPNTVTFNALLDCLCKNDAVDL 630

Query: 487 LVRVFGVSIDRGVKPD 502
            +++F         PD
Sbjct: 631 ALKMFCRMTIMNCSPD 646



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 132/279 (47%), Gaps = 36/279 (12%)

Query: 224  TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
            +Y+ ++     CN+ + A++ F  M   G  P+  TY+ +LD + KS +++E+  LY   
Sbjct: 790  SYNCLMDGLLGCNITEAALKLFVEMKNAGCCPNIFTYNLLLDAHGKSKRIDELFELY--- 846

Query: 284  VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
                                             EM   G +PN++ +N ++ A+ K+   
Sbjct: 847  --------------------------------NEMLCRGCKPNIITHNIIISALVKSNSI 874

Query: 344  GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
              A  L+ E++    +P   T   LI    KA  +++A++++E M + +   +  +YN L
Sbjct: 875  NKALDLYYEIISGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEMPDYQCKPNCAIYNIL 934

Query: 404  LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
            +N     G V  A  LF+ M + +  +PD  SYT ++      G VD+A+  FEE+   G
Sbjct: 935  INGFGKAGNVNIACDLFKRM-IKEGIRPDLKSYTILVECLFMTGRVDDAVHYFEELKLTG 993

Query: 464  VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            +  + +    +I  LGK+RR+++ + +F    +RG+ P+
Sbjct: 994  LDPDTVSYNLMINGLGKSRRLEEALSLFSEMKNRGISPE 1032



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 98/412 (23%), Positives = 186/412 (45%), Gaps = 13/412 (3%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN  +  L   R+     +L N M S  +     +Y   I    +    ++A++ FE+M 
Sbjct: 405 YNTLISGLLNLRRLDEALELFNNMESLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMK 464

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
           K G+MP     +A L   A+ G++ E   ++      G  PD + ++++ K + ++G  D
Sbjct: 465 KRGIMPSIAACNASLYSLAEMGRIREAKDIFNDIHNCGLSPDSVTYNMMMKCYSKAGQID 524

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               +L EM S G +P+++V N+L++ + KAG+   A  +F  + +  L P   T   LI
Sbjct: 525 KATKLLTEMLSEGCEPDIIVVNSLIDTLYKAGRVDEAWQMFGRLKDLKLAPTVVTYNILI 584

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
              GK      AL+L+  M+E+  P + + +N LL+       V+ A ++F  M + + C
Sbjct: 585 TGLGKEGKLLKALDLFGSMKESGCPPNTVTFNALLDCLCKNDAVDLALKMFCRMTIMN-C 643

Query: 430 KPDNYSYTAMLNIYG--SGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
            PD  +Y  +  IYG    G    A   + +M +     +V   T L+  + K  R++D 
Sbjct: 644 SPDVLTYNTI--IYGLIKEGRAGYAFWFYHQMKKFLSPDHVTLYT-LLPGVVKDGRVEDA 700

Query: 488 VRVFGVSIDR-GVKPDDRLCGCLLSVVSL-CETSEDV----GKVITCLQQANPKLVAFLN 541
           +++    + + G++  +++ G L+  + +  E  E +    G V   + Q +  ++  + 
Sbjct: 701 IKIVMEFVHQSGLQTSNQVWGELMECILIEAEIEEAISFAEGLVCNSICQDDNLILPLIR 760

Query: 542 LIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELL 593
           ++       +  K+ F    K           NCL+D     N+ E A +L 
Sbjct: 761 VLCKQKKALD-AKKLFDKFTKSLGTHPTPESYNCLMDGLLGCNITEAALKLF 811



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 90/365 (24%), Positives = 156/365 (42%), Gaps = 38/365 (10%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           FN I +  L P +++ YN+ MK      Q     +L  EM+S   E D I  +++I    
Sbjct: 495 FNDIHNCGLSP-DSVTYNMMMKCYSKAGQIDKATKLLTEMLSEGCEPDIIVVNSLIDTLY 553

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
           +    DEA + F R+    L P  VTY+ ++    K GK+ + L L+     SG  P+ +
Sbjct: 554 KAGRVDEAWQMFGRLKDLKLAPTVVTYNILITGLGKEGKLLKALDLFGSMKESGCPPNTV 613

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
            F+ L     ++   D    +   M  +   P+++ YNT++  + K G+ G A   + +M
Sbjct: 614 TFNALLDCLCKNDAVDLALKMFCRMTIMNCSPDVLTYNTIIYGLIKEGRAGYAFWFYHQM 673

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENK--------WP--MDFILYNTL 403
            +  L+PD  TL  L+    K    +DA+++                W   M+ IL    
Sbjct: 674 -KKFLSPDHVTLYTLLPGVVKDGRVEDAIKIVMEFVHQSGLQTSNQVWGELMECILIEAE 732

Query: 404 L-------------NMCADIGLV-------------EEAERLFEDMKLSDYCKPDNYSYT 437
           +             ++C D  L+              +A++LF+    S    P   SY 
Sbjct: 733 IEEAISFAEGLVCNSICQDDNLILPLIRVLCKQKKALDAKKLFDKFTKSLGTHPTPESYN 792

Query: 438 AMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDR 497
            +++        + A++LF EM   G   N+     L+   GK++RID+L  ++   + R
Sbjct: 793 CLMDGLLGCNITEAALKLFVEMKNAGCCPNIFTYNLLLDAHGKSKRIDELFELYNEMLCR 852

Query: 498 GVKPD 502
           G KP+
Sbjct: 853 GCKPN 857



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 148/337 (43%), Gaps = 28/337 (8%)

Query: 315 LQEMKSLGVQPNLV----VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK 370
           L   K +   PN+V      N +LE +   G+      +FD M +  +  +  T   + K
Sbjct: 106 LSYFKMVSQLPNIVHTPETCNYMLEFLRVHGRVEDMAFVFDLMQKQVINRNPNTYLTIFK 165

Query: 371 ---IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
              I G  R A  AL    +MR+  + ++   YN L+      G  +EA ++++ M +S+
Sbjct: 166 ALSIKGGIRQAPFALG---KMRQAGFVLNAYSYNGLIYFLLQPGFCKEALKVYKRM-ISE 221

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
             KP   +Y+A++   G   +    ++L EEM  LG+  N+   T  I+ LG+A RIDD 
Sbjct: 222 GLKPSMKTYSALMVALGRRRDTGTIMDLLEEMETLGLRPNIYTYTICIRVLGRAGRIDDA 281

Query: 488 VRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAFLNLIE- 544
             +     D G  PD      L+  +      +   ++ T ++ ++  P LV ++ L+  
Sbjct: 282 YGILKTMEDEGCGPDVVTYTVLIDALCAAGKLDKAKELYTKMRASSHKPDLVTYITLMSK 341

Query: 545 -DNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYP 603
             N    E +K  +  +  D        +   +  +C++  +++ A ++L +  + G+ P
Sbjct: 342 FGNYGDLETVKRFWSEMEADGYAPDVVTYTILVEALCKSGKVDQ-AFDMLDVMRVRGIVP 400

Query: 604 GLHN-KTLDEWSLDVRSL-----------SVGAAQTA 628
            LH   TL    L++R L           S+G A TA
Sbjct: 401 NLHTYNTLISGLLNLRRLDEALELFNNMESLGVAPTA 437



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 65/126 (51%), Gaps = 1/126 (0%)

Query: 173  FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            +F  +K   L P +T+ YN+ +  L   R+ +    L +EM +  I  +  TY+ +I   
Sbjct: 985  YFEELKLTGLDP-DTVSYNLMINGLGKSRRLEEALSLFSEMKNRGISPELYTYNALILHF 1043

Query: 233  KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
                + D+A + FE +   GL P+  TY+A++  ++KSG  +   S++++ +  G  P+ 
Sbjct: 1044 GNAGMVDQAGKMFEELQFMGLEPNVFTYNALIRGHSKSGNKDRAFSVFKKMMIVGCSPNA 1103

Query: 293  IAFSVL 298
              F+ L
Sbjct: 1104 GTFAQL 1109


>gi|357454999|ref|XP_003597780.1| Beta-D-galactosidase [Medicago truncatula]
 gi|357455013|ref|XP_003597787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355486828|gb|AES68031.1| Beta-D-galactosidase [Medicago truncatula]
 gi|355486835|gb|AES68038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 100/381 (26%), Positives = 165/381 (43%), Gaps = 41/381 (10%)

Query: 160 ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVS-NEI 218
           IL  +K   K+   F  +K +   P    + +V +  ++ G   + + +L NEM S    
Sbjct: 169 ILGRVKMVNKALSIFYQVKGRKCRPTAGTYNSVILMLMQEGHH-EKVHELYNEMCSEGHC 227

Query: 219 ELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS 278
             D +TYS +I+   + N  D A+  F+ M + GL P    Y+ ++ +Y K GKVEE L+
Sbjct: 228 FPDTVTYSALISAFGKLNRDDSAVRLFDEMKENGLQPTAKIYTTLMGIYFKLGKVEEALN 287

Query: 279 L-----------------------------------YERGVASGWKPDPIAFSVLGKMFG 303
           L                                   Y+  +  G KPD +  + L  + G
Sbjct: 288 LVHEMRMRRCVPTVYTYTELIRGLGKSGRVEDAYGVYKNMLKDGCKPDVVLMNNLINILG 347

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK-AGKPGLARSLFDEMVESGLTPDE 362
            S        + +EM+ L   PN+V YNT+++++ +    P  A S  + M + G+ P  
Sbjct: 348 RSDRLKEAVELFEEMRLLNCTPNVVTYNTIIKSLFEDKAPPSEASSWLERMKKDGVVPSS 407

Query: 363 KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED 422
            T + LI  + K    + AL L E M E  +P     Y +L+N        E A  LF++
Sbjct: 408 FTYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINSLGKAKRYEAANELFQE 467

Query: 423 MKLSDYCKPDNYS-YTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
           +K  + C   +   Y  M+  +G  G  + A+ LF EM +LG   +V     LI  + +A
Sbjct: 468 LK--ENCGSSSVRVYAVMIKHFGKCGRFNEAMGLFNEMKKLGCIPDVYAYNALITGMVRA 525

Query: 482 RRIDDLVRVFGVSIDRGVKPD 502
             +D+   +F    + G  PD
Sbjct: 526 DMMDEAFSLFRTMEENGCNPD 546



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/265 (31%), Positives = 130/265 (49%), Gaps = 12/265 (4%)

Query: 223 ITYSTIITCAKRCNLFD------EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV 276
           +TY+TII      +LF+      EA  W ERM K G++P   TYS ++D + K+ +VE+ 
Sbjct: 372 VTYNTIIK-----SLFEDKAPPSEASSWLERMKKDGVVPSSFTYSILIDGFCKTNRVEKA 426

Query: 277 LSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA 336
           L L E     G+ P P A+  L    G++  Y+    + QE+K      ++ VY  +++ 
Sbjct: 427 LLLLEEMDEKGFPPCPAAYCSLINSLGKAKRYEAANELFQELKENCGSSSVRVYAVMIKH 486

Query: 337 MGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMD 396
            GK G+   A  LF+EM + G  PD     ALI    +A    +A  L+  M EN    D
Sbjct: 487 FGKCGRFNEAMGLFNEMKKLGCIPDVYAYNALITGMVRADMMDEAFSLFRTMEENGCNPD 546

Query: 397 FILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELF 456
              +N +LN  A  G  + A  +F  MK S   KPD  SY  +L      G  + A +L 
Sbjct: 547 INSHNIILNGLARTGGPKRAMEMFAKMK-SSTIKPDAVSYNTVLGCLSRAGLFEEATKLM 605

Query: 457 EEMSELGVAINVMGCTCLIQCLGKA 481
           +EM+  G   +++  + +++ +GK 
Sbjct: 606 KEMNSKGFEYDLITYSSILEAVGKV 630



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 99/412 (24%), Positives = 167/412 (40%), Gaps = 49/412 (11%)

Query: 129 RKLNDCDNTEEAFLRAITEIPHQPTRENAL----------LILNSLKFWQKSYF---FFN 175
           RK  +    +E F+R +      P  E AL          L+   LK   + +    FF 
Sbjct: 54  RKDPNARKLDERFIRILKIFKWGPDAEKALEVLKLKLDIRLVREVLKIDVEVHVKIQFFK 113

Query: 176 WIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRC 235
           W   +  F  ++  Y   ++ L   R    + +   +MV +   +     S I+    R 
Sbjct: 114 WAGKKRNFEHDSTTYMALIRCLDENRLVGELWRTIQDMVKSPCAIGPSELSEIVKILGRV 173

Query: 236 NLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW-KPDPIA 294
            + ++A+  F ++      P   TY++++ +  + G  E+V  LY    + G   PD + 
Sbjct: 174 KMVNKALSIFYQVKGRKCRPTAGTYNSVILMLMQEGHHEKVHELYNEMCSEGHCFPDTVT 233

Query: 295 FSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMV 354
           +S L   FG+    D    +  EMK  G+QP   +Y TL+    K GK   A +L  EM 
Sbjct: 234 YSALISAFGKLNRDDSAVRLFDEMKENGLQPTAKIYTTLMGIYFKLGKVEEALNLVHEMR 293

Query: 355 ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
                P   T T LI+  GK+   +DA  +++ M ++    D +L N L+N+      ++
Sbjct: 294 MRRCVPTVYTYTELIRGLGKSGRVEDAYGVYKNMLKDGCKPDVVLMNNLINILGRSDRLK 353

Query: 415 EAERLFEDMKL-----------------------------------SDYCKPDNYSYTAM 439
           EA  LFE+M+L                                    D   P +++Y+ +
Sbjct: 354 EAVELFEEMRLLNCTPNVVTYNTIIKSLFEDKAPPSEASSWLERMKKDGVVPSSFTYSIL 413

Query: 440 LNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           ++ +     V+ A+ L EEM E G          LI  LGKA+R +    +F
Sbjct: 414 IDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINSLGKAKRYEAANELF 465



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 92/184 (50%), Gaps = 4/184 (2%)

Query: 160 ILNSL---KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSN 216
           ++NSL   K ++ +   F  +K +N        Y V +K      +F     L NEM   
Sbjct: 448 LINSLGKAKRYEAANELFQELK-ENCGSSSVRVYAVMIKHFGKCGRFNEAMGLFNEMKKL 506

Query: 217 EIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV 276
               D   Y+ +IT   R ++ DEA   F  M + G  PD  +++ IL+  A++G  +  
Sbjct: 507 GCIPDVYAYNALITGMVRADMMDEAFSLFRTMEENGCNPDINSHNIILNGLARTGGPKRA 566

Query: 277 LSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA 336
           + ++ +  +S  KPD ++++ +      +G ++    +++EM S G + +L+ Y+++LEA
Sbjct: 567 MEMFAKMKSSTIKPDAVSYNTVLGCLSRAGLFEEATKLMKEMNSKGFEYDLITYSSILEA 626

Query: 337 MGKA 340
           +GK 
Sbjct: 627 VGKV 630



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 103/230 (44%), Gaps = 37/230 (16%)

Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411
           +MV+S        L+ ++KI G+ +    AL ++ +++  K       YN+++ M    G
Sbjct: 150 DMVKSPCAIGPSELSEIVKILGRVKMVNKALSIFYQVKGRKCRPTAGTYNSVILMLMQEG 209

Query: 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG------VA 465
             E+   L+ +M    +C PD  +Y+A+++ +G     D+A+ LF+EM E G      + 
Sbjct: 210 HHEKVHELYNEMCSEGHCFPDTVTYSALISAFGKLNRDDSAVRLFDEMKENGLQPTAKIY 269

Query: 466 INVMGC-----------------------------TCLIQCLGKARRIDDLVRVFGVSID 496
             +MG                              T LI+ LGK+ R++D   V+   + 
Sbjct: 270 TTLMGIYFKLGKVEEALNLVHEMRMRRCVPTVYTYTELIRGLGKSGRVEDAYGVYKNMLK 329

Query: 497 RGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAFLNLIE 544
            G KPD  L   L++++   +  ++  ++   ++  N  P +V +  +I+
Sbjct: 330 DGCKPDVVLMNNLINILGRSDRLKEAVELFEEMRLLNCTPNVVTYNTIIK 379


>gi|255661192|gb|ACU25765.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
          Length = 426

 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/290 (30%), Positives = 149/290 (51%), Gaps = 1/290 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D  TYST+IT   +  LFD A+ W ++M +  +  D V YS ++++  K     + +S++
Sbjct: 8   DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
            R   SG+ PD +A++ +  +FG++  +   R ++ EM++ GV P+ V Y TLL    + 
Sbjct: 68  SRLKRSGFAPDLVAYNSMINVFGKAKLFREARSLINEMRTAGVMPDTVSYTTLLTMHVEN 127

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
            +   A S+F EM E     D  T   +I +YG+   AK+A +L+  MR+     + + Y
Sbjct: 128 KRFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKIGIEPNVVSY 187

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           NTLL +  D  L  EA  LF  M+  +  + +  +Y +M+ IYG     + A  L +EM 
Sbjct: 188 NTLLRVYGDAELFGEAIHLFRLMQRKN-IEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 246

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
             G+  N +  + +I   GK  ++D    +F    + GV+ D  L   ++
Sbjct: 247 NRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRNSGVEIDQVLYQTMI 296



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 85/364 (23%), Positives = 171/364 (46%), Gaps = 6/364 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K     P + + YN  +      + F+    L NEM +  +  D ++Y+
Sbjct: 60  YSKAISIFSRLKRSGFAP-DLVAYNSMINVFGKAKLFREARSLINEMRTAGVMPDTVSYT 118

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY + G  +E   L+      
Sbjct: 119 TLLTMHVENKRFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKI 178

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   ++ N+V YN+++   GK  +   A
Sbjct: 179 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKA 238

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R +   +D +LY T++  
Sbjct: 239 NNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRNSGVEIDQVLYQTMIVA 298

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K     +PDN      ++I  + G ++ A  +F +  + G   
Sbjct: 299 YERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAAAGRJEEATWVFRQAIDAGEVK 353

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           ++     LI    K ++  ++V VF    +R   PD  +   +L+        E    V 
Sbjct: 354 DITVFERLIHLFSKYKKYXNVVEVFDKMRERRYFPDSNVIALVLNAYGKLHEFEKANSVY 413

Query: 527 TCLQ 530
             +Q
Sbjct: 414 MEMQ 417



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/271 (23%), Positives = 138/271 (50%), Gaps = 1/271 (0%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
            +M  + +  D + YS +I  +++   + +AI  F R+ ++G  PD V Y+++++V+ K+
Sbjct: 33  QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFAPDLVAYNSMINVFGKA 92

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
               E  SL      +G  PD ++++ L  M  E+  +     V  EM+ +    +L   
Sbjct: 93  KLFREARSLINEMRTAGVMPDTVSYTTLLTMHVENKRFLEALSVFAEMREIKCLLDLTTC 152

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
           N +++  G+ G    A  LF  M + G+ P+  +   L+++YG A    +A+ L+  M+ 
Sbjct: 153 NIMIDVYGQLGMAKEADKLFWGMRKIGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR 212

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
                + + YN+++ +       E+A  L ++M+ +   +P++ +Y+ +++I+G  G +D
Sbjct: 213 KNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ-NRGIEPNSITYSTIISIWGKVGKLD 271

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
            A  LF+++   GV I+ +    +I    +A
Sbjct: 272 RAAMLFQKLRNSGVEIDQVLYQTMIVAYERA 302



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 126/261 (48%), Gaps = 1/261 (0%)

Query: 252 GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGI 311
            L PD  TYS ++  + K G  +  LS  ++        D + +S L ++  +  DY   
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 312 RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371
             +   +K  G  P+LV YN+++   GKA     ARSL +EM  +G+ PD  + T L+ +
Sbjct: 64  ISIFSRLKRSGFAPDLVAYNSMINVFGKAKLFREARSLINEMRTAGVMPDTVSYTTLLTM 123

Query: 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
           + + +   +AL ++  MRE K  +D    N ++++   +G+ +EA++LF  M+     +P
Sbjct: 124 HVENKRFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKIG-IEP 182

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           +  SY  +L +YG       AI LF  M    +  NV+    ++   GK    +    + 
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 242

Query: 492 GVSIDRGVKPDDRLCGCLLSV 512
               +RG++P+      ++S+
Sbjct: 243 QEMQNRGIEPNSITYSTIISI 263



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 103/244 (42%), Gaps = 36/244 (14%)

Query: 290 PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSL 349
           PD   +S L   FG+ G +D     LQ+M+   V  +LV+Y+ L+E         L+R L
Sbjct: 7   PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIE---------LSRKL 57

Query: 350 FDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCAD 409
            D                    Y KA      + ++ R++ + +  D + YN+++N+   
Sbjct: 58  CD--------------------YSKA------ISIFSRLKRSGFAPDLVAYNSMINVFGK 91

Query: 410 IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVM 469
             L  EA  L  +M+ +    PD  SYT +L ++        A+ +F EM E+   +++ 
Sbjct: 92  AKLFREARSLINEMRTAG-VMPDTVSYTTLLTMHVENKRFLEALSVFAEMREIKCLLDLT 150

Query: 470 GCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCL 529
            C  +I   G+     +  ++F      G++P+      LL V    E   +   +   +
Sbjct: 151 TCNIMIDVYGQLGMAKEADKLFWGMRKIGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLM 210

Query: 530 QQAN 533
           Q+ N
Sbjct: 211 QRKN 214



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/249 (21%), Positives = 106/249 (42%), Gaps = 5/249 (2%)

Query: 142 LRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGR 201
           +R I   P+  +    L +    + + ++   F  ++ +N+     + YN  M       
Sbjct: 175 MRKIGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNI-EQNVVTYNSMMMIYGKTL 233

Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS 261
           + +    L  EM +  IE ++ITYSTII+   +    D A   F+++  +G+  D+V Y 
Sbjct: 234 EHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRNSGVEIDQVLYQ 293

Query: 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
            ++  Y ++G V       +R +    +PD I       +   +G  +   +V ++    
Sbjct: 294 TMIVAYERAGLVAHA----KRLLHELKRPDNIPRDTAIHILAAAGRJEEATWVFRQAIDA 349

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
           G   ++ V+  L+    K  K      +FD+M E    PD   +  ++  YGK    + A
Sbjct: 350 GEVKDITVFERLIHLFSKYKKYXNVVEVFDKMRERRYFPDSNVIALVLNAYGKLHEFEKA 409

Query: 382 LELWERMRE 390
             ++  M++
Sbjct: 410 NSVYMEMQD 418


>gi|242035429|ref|XP_002465109.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
 gi|241918963|gb|EER92107.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
          Length = 1153

 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/335 (26%), Positives = 164/335 (48%), Gaps = 7/335 (2%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           Y+V M S    R    +  L NEM +  ++ +  +Y+  I    +   FDEA +   +M 
Sbjct: 216 YSVLMVSFGKKRDVDTVLWLLNEMEARGVKPNVYSYTICIRVLGQAARFDEAYQILGKME 275

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
            +G  PD VT++ ++ V   +G++ +   ++ +  AS  KPD + +  L    G+SGD  
Sbjct: 276 DSGCKPDVVTHTVVIQVLCDAGRLSDAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSQ 335

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
            +  +   M + G   N+V Y  +++A+ + G+   A ++FDEM E G++P++ +  +LI
Sbjct: 336 SVMEIWNAMVADGYNDNIVSYTAVVDALCQVGRLDEALAVFDEMKEKGISPEQYSYNSLI 395

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
             + KA     ALEL+  M       +   +   +N     G   +A + +E MK S   
Sbjct: 396 SGFLKADMFDRALELFNHMNACGPSPNGYTHVLFINYYGKSGQSLKAIQRYEHMK-SKGI 454

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
            PD  +  A+L+     G +  A  +F E+ ++GV+ + +  T +I+C  KA + D+ + 
Sbjct: 455 VPDVAAANAVLSSLARSGRLGMAKRVFYELKDMGVSPDTITYTMMIKCCSKASKADEAMN 514

Query: 490 VFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGK 524
            F   ++ G  PD      +L++ SL +T    GK
Sbjct: 515 FFSDMVETGCVPD------VLALNSLIDTLYKGGK 543



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 115/427 (26%), Positives = 194/427 (45%), Gaps = 16/427 (3%)

Query: 204 QLIEQLA--NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS 261
           +L E LA  +EM    I  +  +Y+++I+   + ++FD A+E F  M   G  P+  T+ 
Sbjct: 368 RLDEALAVFDEMKEKGISPEQYSYNSLISGFLKADMFDRALELFNHMNACGPSPNGYTHV 427

Query: 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
             ++ Y KSG+  + +  YE   + G  PD  A + +      SG     + V  E+K +
Sbjct: 428 LFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLSSLARSGRLGMAKRVFYELKDM 487

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
           GV P+ + Y  +++   KA K   A + F +MVE+G  PD   L +LI    K     +A
Sbjct: 488 GVSPDTITYTMMIKCCSKASKADEAMNFFSDMVETGCVPDVLALNSLIDTLYKGGKGNEA 547

Query: 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
            +L+ +++E K       YNTLL+     G V+E   L E+M  S +  P+  +Y  +L+
Sbjct: 548 WKLFHQLKEMKIEPTNGTYNTLLSGLGREGKVKEVMHLLEEMTHSIH-PPNLITYNTVLD 606

Query: 442 IYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
                G V+ AI +   M+E G   ++     ++  L K  R ++  R+F   + + + P
Sbjct: 607 CLSKNGEVNCAIGMLYSMTEKGCTPDLSSYNTVMYGLIKEERFEEAFRMF-CQMKKILAP 665

Query: 502 D-DRLCGCLLSVVSLCETSEDVGKVITCLQQA--NPKLVAFLNLIED--NSTGFENIKEE 556
           D   LC  L S V      E +  V   + +A  N    +F +L+E   N  G E   E 
Sbjct: 666 DYATLCTILPSFVKNGLMKEALHTVKEYILKADCNTDKSSFHSLMEGILNKAGVEKSIEF 725

Query: 557 FRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHEL------LYLGTLYGLYPGLHNKTL 610
             N+     +      C  +  +C+++   E AH+L      L +    G Y  L    +
Sbjct: 726 AENIASRGILLNDFFLCPLIRHLCKHKKALE-AHQLFNKFKGLGVSLKTGSYNSLIRGLV 784

Query: 611 DEWSLDV 617
           DE  +D+
Sbjct: 785 DENLIDI 791



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/319 (23%), Positives = 147/319 (46%), Gaps = 34/319 (10%)

Query: 218 IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL 277
           + L+  TY+ +I    +     EA+E ++ M + G+ P   TYS ++  + K   V+ VL
Sbjct: 174 MSLNGYTYNGLIYFLVKSGFDAEAMEVYKAMVEDGISPSVRTYSVLMVSFGKKRDVDTVL 233

Query: 278 SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
            L     A G KP+  ++++  ++ G++  +D    +L +M+  G +P++V +  +++ +
Sbjct: 234 WLLNEMEARGVKPNVYSYTICIRVLGQAARFDEAYQILGKMEDSGCKPDVVTHTVVIQVL 293

Query: 338 GKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDF 397
             AG+   A+ +F +M  S   PD  T   L+   G +  ++  +E+W  M  + +  + 
Sbjct: 294 CDAGRLSDAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSQSVMEIWNAMVADGYNDNI 353

Query: 398 ILYNTLLNMCADIGLVEEAERLFEDMK--------------LSDYCK------------- 430
           + Y  +++    +G ++EA  +F++MK              +S + K             
Sbjct: 354 VSYTAVVDALCQVGRLDEALAVFDEMKEKGISPEQYSYNSLISGFLKADMFDRALELFNH 413

Query: 431 -------PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483
                  P+ Y++   +N YG  G    AI+ +E M   G+  +V     ++  L ++ R
Sbjct: 414 MNACGPSPNGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLSSLARSGR 473

Query: 484 IDDLVRVFGVSIDRGVKPD 502
           +    RVF    D GV PD
Sbjct: 474 LGMAKRVFYELKDMGVSPD 492



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 137/308 (44%), Gaps = 2/308 (0%)

Query: 169  KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
            +++  FN  K   +  ++T  YN  ++ L       + E L  EM       D  TY+ I
Sbjct: 756  EAHQLFNKFKGLGV-SLKTGSYNSLIRGLVDENLIDIAEDLFTEMKRLGCGPDEFTYNLI 814

Query: 229  ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
            +    +    +E +     M++ G     VTY+ I+    KS ++E+ + LY   ++ G+
Sbjct: 815  LDAMGKSMRIEEMLRVQAEMHRKGYESTYVTYNTIISGLVKSKRLEQAIDLYYNLMSEGF 874

Query: 289  KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348
             P P  +  L     ++G       +  EM   G +PN  +YN LL     AG       
Sbjct: 875  SPTPCTYGPLLDGLLKAGKMVDAENLFNEMLEYGCKPNCTIYNILLNGHRIAGNTENVCQ 934

Query: 349  LFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCA 408
            +F++MVE G+ PD K+ T LI     A    D L  + ++ E     D I+YN L++   
Sbjct: 935  IFEKMVEQGINPDIKSYTVLIDTLCTAGRLNDGLSYFRQLLELGLEPDLIIYNLLIDGLG 994

Query: 409  DIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINV 468
                +EEA  LF +MK      P+ Y+Y +++   G  G    A +++EE+   G   NV
Sbjct: 995  KSERIEEAVCLFNEMKKKGIV-PNLYTYNSLILHLGKAGKASEAAQMYEELLIKGWKPNV 1053

Query: 469  MGCTCLIQ 476
                 LI+
Sbjct: 1054 FTYNALIR 1061



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/342 (24%), Positives = 161/342 (47%), Gaps = 12/342 (3%)

Query: 163 SLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDN 222
           SLK  Q+    +  +KS+ + P +    N  + SL    +  + +++  E+    +  D 
Sbjct: 439 SLKAIQR----YEHMKSKGIVP-DVAAANAVLSSLARSGRLGMAKRVFYELKDMGVSPDT 493

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           ITY+ +I C  + +  DEA+ +F  M +TG +PD +  ++++D   K GK  E   L+ +
Sbjct: 494 ITYTMMIKCCSKASKADEAMNFFSDMVETGCVPDVLALNSLIDTLYKGGKGNEAWKLFHQ 553

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
                 +P    ++ L    G  G    + ++L+EM      PNL+ YNT+L+ + K G+
Sbjct: 554 LKEMKIEPTNGTYNTLLSGLGREGKVKEVMHLLEEMTHSIHPPNLITYNTVLDCLSKNGE 613

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
              A  +   M E G TPD  +   ++    K    ++A  ++ +M++   P D+    T
Sbjct: 614 VNCAIGMLYSMTEKGCTPDLSSYNTVMYGLIKEERFEEAFRMFCQMKKILAP-DYATLCT 672

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
           +L      GL++EA    ++  L   C  D  S+ +++    +   V+ +IE  E ++  
Sbjct: 673 ILPSFVKNGLMKEALHTVKEYILKADCNTDKSSFHSLMEGILNKAGVEKSIEFAENIASR 732

Query: 463 GVAINVMGCTCLIQCLGKARRIDDLVRVF------GVSIDRG 498
           G+ +N      LI+ L K ++  +  ++F      GVS+  G
Sbjct: 733 GILLNDFFLCPLIRHLCKHKKALEAHQLFNKFKGLGVSLKTG 774



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 140/294 (47%), Gaps = 5/294 (1%)

Query: 198 RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDE 257
           R G   Q+ + +  ++V   +     T++T+ +          A      M + G+  + 
Sbjct: 123 RVGDMAQVFDLMQKQIVKANVG----TFATVFSGVGVQGGLRSAPVALPVMREAGMSLNG 178

Query: 258 VTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQE 317
            TY+ ++    KSG   E + +Y+  V  G  P    +SVL   FG+  D D + ++L E
Sbjct: 179 YTYNGLIYFLVKSGFDAEAMEVYKAMVEDGISPSVRTYSVLMVSFGKKRDVDTVLWLLNE 238

Query: 318 MKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARW 377
           M++ GV+PN+  Y   +  +G+A +   A  +  +M +SG  PD  T T +I++   A  
Sbjct: 239 MEARGVKPNVYSYTICIRVLGQAARFDEAYQILGKMEDSGCKPDVVTHTVVIQVLCDAGR 298

Query: 378 AKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYT 437
             DA +++ +M+ +    D + Y TLL+ C D G  +    ++  M ++D    +  SYT
Sbjct: 299 LSDAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSQSVMEIWNAM-VADGYNDNIVSYT 357

Query: 438 AMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           A+++     G +D A+ +F+EM E G++        LI    KA   D  + +F
Sbjct: 358 AVVDALCQVGRLDEALAVFDEMKEKGISPEQYSYNSLISGFLKADMFDRALELF 411



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 83/338 (24%), Positives = 151/338 (44%), Gaps = 68/338 (20%)

Query: 190  YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
            YN+ + ++    + + + ++  EM     E   +TY+TII+   +    ++AI+ +  + 
Sbjct: 811  YNLILDAMGKSMRIEEMLRVQAEMHRKGYESTYVTYNTIISGLVKSKRLEQAIDLYYNLM 870

Query: 250  KTGLMPDEVTYSAILDVYAKSGKV-----------------------------------E 274
              G  P   TY  +LD   K+GK+                                   E
Sbjct: 871  SEGFSPTPCTYGPLLDGLLKAGKMVDAENLFNEMLEYGCKPNCTIYNILLNGHRIAGNTE 930

Query: 275  EVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY-DGIRYVLQEMKSLGVQPNLVVYNTL 333
             V  ++E+ V  G  PD  +++VL      +G   DG+ Y  +++  LG++P+L++YN L
Sbjct: 931  NVCQIFEKMVEQGINPDIKSYTVLIDTLCTAGRLNDGLSY-FRQLLELGLEPDLIIYNLL 989

Query: 334  LEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKW 393
            ++ +GK+ +   A  LF+EM + G+ P+  T  +LI   GKA  A +A +++E +    W
Sbjct: 990  IDGLGKSERIEEAVCLFNEMKKKGIVPNLYTYNSLILHLGKAGKASEAAQMYEELLIKGW 1049

Query: 394  PMDFILYNTLLNM---------------CADI----------GLVEE-----AERLFEDM 423
              +   YN L+                 C  +          GLV+E     AE LF +M
Sbjct: 1050 KPNVFTYNALIRGYSVSGSTDNAYAAYDCVAVGVSLKTALISGLVDENLINIAEGLFAEM 1109

Query: 424  KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461
            K    C PD ++Y  +L+  G    ++  +++ EE++E
Sbjct: 1110 KRRG-CGPDQFTYNLILDAIGKSMRIEEMLKVQEEIAE 1146



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 147/323 (45%), Gaps = 1/323 (0%)

Query: 207  EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
             QL N+     + L   +Y+++I      NL D A + F  M + G  PDE TY+ ILD 
Sbjct: 758  HQLFNKFKGLGVSLKTGSYNSLIRGLVDENLIDIAEDLFTEMKRLGCGPDEFTYNLILDA 817

Query: 267  YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
              KS ++EE+L +       G++   + ++ +     +S   +    +   + S G  P 
Sbjct: 818  MGKSMRIEEMLRVQAEMHRKGYESTYVTYNTIISGLVKSKRLEQAIDLYYNLMSEGFSPT 877

Query: 327  LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
               Y  LL+ + KAGK   A +LF+EM+E G  P+      L+  +  A   ++  +++E
Sbjct: 878  PCTYGPLLDGLLKAGKMVDAENLFNEMLEYGCKPNCTIYNILLNGHRIAGNTENVCQIFE 937

Query: 387  RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
            +M E     D   Y  L++     G + +    F  + L    +PD   Y  +++  G  
Sbjct: 938  KMVEQGINPDIKSYTVLIDTLCTAGRLNDGLSYFRQL-LELGLEPDLIIYNLLIDGLGKS 996

Query: 447  GNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLC 506
              ++ A+ LF EM + G+  N+     LI  LGKA +  +  +++   + +G KP+    
Sbjct: 997  ERIEEAVCLFNEMKKKGIVPNLYTYNSLILHLGKAGKASEAAQMYEELLIKGWKPNVFTY 1056

Query: 507  GCLLSVVSLCETSEDVGKVITCL 529
              L+   S+  ++++      C+
Sbjct: 1057 NALIRGYSVSGSTDNAYAAYDCV 1079



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/264 (25%), Positives = 122/264 (46%), Gaps = 1/264 (0%)

Query: 239 DEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
           +++IE+ E +   G++ ++     ++    K  K  E   L+ +    G      +++ L
Sbjct: 720 EKSIEFAENIASRGILLNDFFLCPLIRHLCKHKKALEAHQLFNKFKGLGVSLKTGSYNSL 779

Query: 299 GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
            +   +    D    +  EMK LG  P+   YN +L+AMGK+ +      +  EM   G 
Sbjct: 780 IRGLVDENLIDIAEDLFTEMKRLGCGPDEFTYNLILDAMGKSMRIEEMLRVQAEMHRKGY 839

Query: 359 TPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAER 418
                T   +I    K++  + A++L+  +    +      Y  LL+     G + +AE 
Sbjct: 840 ESTYVTYNTIISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKAGKMVDAEN 899

Query: 419 LFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL 478
           LF +M L   CKP+   Y  +LN +   GN +N  ++FE+M E G+  ++   T LI  L
Sbjct: 900 LFNEM-LEYGCKPNCTIYNILLNGHRIAGNTENVCQIFEKMVEQGINPDIKSYTVLIDTL 958

Query: 479 GKARRIDDLVRVFGVSIDRGVKPD 502
             A R++D +  F   ++ G++PD
Sbjct: 959 CTAGRLNDGLSYFRQLLELGLEPD 982



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 59/284 (20%), Positives = 121/284 (42%), Gaps = 39/284 (13%)

Query: 263 ILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG 322
           ++  + + G + +V  L ++ +    K +   F+ +    G  G        L  M+  G
Sbjct: 117 LMRAHGRVGDMAQVFDLMQKQIV---KANVGTFATVFSGVGVQGGLRSAPVALPVMREAG 173

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL-------------- 368
           +  N   YN L+  + K+G    A  ++  MVE G++P  +T + L              
Sbjct: 174 MSLNGYTYNGLIYFLVKSGFDAEAMEVYKAMVEDGISPSVRTYSVLMVSFGKKRDVDTVL 233

Query: 369 ---------------------IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
                                I++ G+A    +A ++  +M ++    D + +  ++ + 
Sbjct: 234 WLLNEMEARGVKPNVYSYTICIRVLGQAARFDEAYQILGKMEDSGCKPDVVTHTVVIQVL 293

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
            D G + +A+ +F  MK SD  KPD  +Y  +L+  G  G+  + +E++  M   G   N
Sbjct: 294 CDAGRLSDAKDVFWKMKASDQ-KPDRVTYITLLDKCGDSGDSQSVMEIWNAMVADGYNDN 352

Query: 468 VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
           ++  T ++  L +  R+D+ + VF    ++G+ P+      L+S
Sbjct: 353 IVSYTAVVDALCQVGRLDEALAVFDEMKEKGISPEQYSYNSLIS 396



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 84/174 (48%), Gaps = 5/174 (2%)

Query: 218  IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL 277
            +E D I Y+ +I    +    +EA+  F  M K G++P+  TY++++    K+GK  E  
Sbjct: 979  LEPDLIIYNLLIDGLGKSERIEEAVCLFNEMKKKGIVPNLYTYNSLILHLGKAGKASEAA 1038

Query: 278  SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
             +YE  +  GWKP+   ++ L + +  SG  D   Y   +  ++GV     +   L+  +
Sbjct: 1039 QMYEELLIKGWKPNVFTYNALIRGYSVSGSTDNA-YAAYDCVAVGVS----LKTALISGL 1093

Query: 338  GKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN 391
                   +A  LF EM   G  PD+ T   ++   GK+   ++ L++ E + E+
Sbjct: 1094 VDENLINIAEGLFAEMKRRGCGPDQFTYNLILDAIGKSMRIEEMLKVQEEIAED 1147



 Score = 48.9 bits (115), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 74/173 (42%), Gaps = 16/173 (9%)

Query: 173  FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            +F  +    L P + I YN+ +  L    + +    L NEM    I  +  TY+++I   
Sbjct: 970  YFRQLLELGLEP-DLIIYNLLIDGLGKSERIEEAVCLFNEMKKKGIVPNLYTYNSLILHL 1028

Query: 233  KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
             +     EA + +E +   G  P+  TY+A++  Y+ SG  +   + Y          D 
Sbjct: 1029 GKAGKASEAAQMYEELLIKGWKPNVFTYNALIRGYSVSGSTDNAYAAY----------DC 1078

Query: 293  IAFSVLGKMFGESGDYDG-----IRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
            +A  V  K    SG  D         +  EMK  G  P+   YN +L+A+GK+
Sbjct: 1079 VAVGVSLKTALISGLVDENLINIAEGLFAEMKRRGCGPDQFTYNLILDAIGKS 1131


>gi|302795346|ref|XP_002979436.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
 gi|300152684|gb|EFJ19325.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
          Length = 500

 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 142/290 (48%), Gaps = 1/290 (0%)

Query: 213 MVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK 272
           + +N    D +TY+++I    +    ++A+ +  +M   G  PD  TY+A++       +
Sbjct: 2   VATNSCSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENR 61

Query: 273 VEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNT 332
           + E     E        P+ + ++VL     + G  D    +L +M+   V P  V YN+
Sbjct: 62  LHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCV-PTAVTYNS 120

Query: 333 LLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENK 392
           L+  + KA +   A  L +EMV SG  PD  T T LI  + K++ + DAL ++E++    
Sbjct: 121 LISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARG 180

Query: 393 WPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNA 452
           +  D + Y+ L++     G ++EA  LF  M  S  C P+  +Y ++++ +   G +D A
Sbjct: 181 FRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEA 240

Query: 453 IELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           + L E M+E G + +V+  T L+    K  R+DD   +      +G+ PD
Sbjct: 241 MNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPD 290



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/299 (28%), Positives = 141/299 (47%), Gaps = 10/299 (3%)

Query: 195 KSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLM 254
           K+ R    + L+E    EMV +    D  TY+T+IT   +    D+A+  FE++   G  
Sbjct: 127 KAERASEAYDLLE----EMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFR 182

Query: 255 PDEVTYSAILDVYAKSGKVEEVLSLYERGVASG-WKPDPIAFSVLGKMFGESGDYDGIRY 313
           PD VTYS ++D   K G+++E + L+ R + SG   P+ + ++ L   F   G  D    
Sbjct: 183 PDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMN 242

Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYG 373
           +L+ M   G  P++V Y TL+    K  +   A  L ++M   GLTPD  T T+L+    
Sbjct: 243 LLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLC 302

Query: 374 KARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAER-LFEDMKLSDYCKPD 432
           +     DA+ +   MR          YNT+L+       +EEA + + E+M     C P+
Sbjct: 303 RENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFMLEEMD----CPPN 358

Query: 433 NYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
             S+  M+           A+EL EE        +V+  T +I  L + +++D+  RV+
Sbjct: 359 VVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVY 417



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 138/300 (46%), Gaps = 4/300 (1%)

Query: 161 LNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIEL 220
           L  +K  +++  F   + S+   P +   Y   + +L    +     +   EM +  +  
Sbjct: 21  LCKVKRLEQALIFLGKMVSKGFHP-DVYTYTAVIHALCVENRLHEARKFLEEMANRNLTP 79

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           + +TY+ +I    +    DEA+    +M K   +P  VTY++++    K+ +  E   L 
Sbjct: 80  NVVTYTVLIDGLCKGGRVDEAVALLSKMRKK-CVPTAVTYNSLISGLCKAERASEAYDLL 138

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
           E  V SG  PD   ++ L   F +S   D    V +++ + G +P++V Y+ L++ + K 
Sbjct: 139 EEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKE 198

Query: 341 GKPGLARSLFDEMVESG-LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
           G+   A  LF  M++SG   P+  T  +LI  + +     +A+ L ERM E     D + 
Sbjct: 199 GRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVT 258

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           Y TL+N    +  +++A  L   M       PD  ++T++++       + +A+ +  EM
Sbjct: 259 YTTLMNGFCKLARLDDAYDLLNQMTRKGL-TPDVVTFTSLMDGLCRENRLSDAVHILGEM 317



 Score = 99.4 bits (246), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 83/341 (24%), Positives = 149/341 (43%), Gaps = 50/341 (14%)

Query: 195 KSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTG-L 253
           KS +     ++ EQL    V+     D +TYS +I    +     EAI+ F RM K+G  
Sbjct: 162 KSKKSDDALRVFEQL----VARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSC 217

Query: 254 MPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRY 313
           MP+ VTY++++  + + GK++E ++L ER   +G  PD + ++ L   F +    D    
Sbjct: 218 MPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYD 277

Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYG 373
           +L +M   G+ P++V + +L++ + +  +   A  +  EM     +P   T   ++  Y 
Sbjct: 278 LLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYC 337

Query: 374 KARW---------------------------------AKDALELWERMRENKWPMDFILY 400
           +A                                   + +A+EL E  R  +   D ++Y
Sbjct: 338 RANQLEEARKFMLEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMY 397

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
            T+++       V+EA R++  M     C P++ +Y+ ++    + G +D A    E+  
Sbjct: 398 TTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLVTGLCNAGMLDRARGYIEK-- 455

Query: 461 ELGVAINVMGCTCLIQCLGKARR-------IDDLV-RVFGV 493
             G   N+     LI    KA R       +DD+V R FGV
Sbjct: 456 --GCVPNIGTYNLLIDAFRKANRDEDARELLDDMVQRGFGV 494



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 80/185 (43%), Gaps = 2/185 (1%)

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
           + V Y +L++ + K  +   A     +MV  G  PD  T TA+I          +A +  
Sbjct: 10  DFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFL 69

Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445
           E M       + + Y  L++     G V+EA  L   M+    C P   +Y ++++    
Sbjct: 70  EEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMR--KKCVPTAVTYNSLISGLCK 127

Query: 446 GGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRL 505
                 A +L EEM   G   ++   T LI    K+++ DD +RVF   + RG +PD   
Sbjct: 128 AERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVT 187

Query: 506 CGCLL 510
             CL+
Sbjct: 188 YSCLI 192


>gi|413955492|gb|AFW88141.1| hypothetical protein ZEAMMB73_138069 [Zea mays]
          Length = 1091

 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 104/388 (26%), Positives = 182/388 (46%), Gaps = 8/388 (2%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
           +EM    +  +  +Y+++I+   + ++FD A+E F  M   G  P+  T+   ++ Y KS
Sbjct: 370 DEMKEKGMSPEQYSYNSLISGFLKADMFDRALELFNHMNACGPSPNGYTHVLFINYYGKS 429

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
           G+  + +  YE   + G  PD  A + +      SG     + V  E+K++GV P+ + Y
Sbjct: 430 GQSLKAIQRYEHMKSKGIVPDVAAANAVLYSLAGSGRLGMAKRVFYELKAMGVSPDTITY 489

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
             +++   KA K   A + F +MVESG  PD   L +LI    K     +A +L+ +++E
Sbjct: 490 TMMIKCCSKASKADEAMNFFSDMVESGCVPDVLALNSLIDTLYKGGKGNEAWQLFHKLKE 549

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
            K       YNTLL+     G V+E  +L E+M  + Y  P+  +Y  +L+     G V+
Sbjct: 550 MKIEPTNGTYNTLLSGLGREGKVKEVMQLLEEMTRTIY-PPNLITYNTVLDCLSKNGEVN 608

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD-DRLCGCL 509
            AI++   M+E G A ++     ++  L K  R+++  R+F   + + + PD   LC  L
Sbjct: 609 CAIDMLYSMTEKGCAPDLSSYNTVMYGLIKEERLEEAFRMF-CQMKKILAPDYATLCTIL 667

Query: 510 LSVVSLCETSEDVGKVITCLQQA--NPKLVAFLNLIED--NSTGFENIKEEFRNVIKDTE 565
            S V      E +  V   + +A  N    +F +L+E      G E   E   N+     
Sbjct: 668 PSFVKNGLMKEALHTVKEYILKAGCNVDKSSFHSLMEGILKKAGVEKSIEFAENIASRGI 727

Query: 566 VDARRPFCNCLIDICRNRNLNERAHELL 593
           +      C  +  +C+++   E AH+L 
Sbjct: 728 LLNDFFLCPLIRHLCKHKKALE-AHQLF 754



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 162/335 (48%), Gaps = 7/335 (2%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           Y+V M +    R    +  L NEM +  ++ +  +Y+  I    +   FDEA     +M 
Sbjct: 209 YSVLMVAFGKKRDVDTVLWLLNEMEARGVKPNVYSYTICIRVLGQAARFDEAYHILGKME 268

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
            +G  PD VT++ I+ V   +G++ +  +++ +  AS  KPD + +  L    G+SGD  
Sbjct: 269 DSGCKPDVVTHTVIIQVLCDAGRLSDAKAVFWKMKASDQKPDRVTYITLLDKCGDSGDSQ 328

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
            +  V   M + G   N+V Y  +++A+ + G+   A ++FDEM E G++P++ +  +LI
Sbjct: 329 SVVEVWNAMVADGYNDNIVSYTAVVDALCQVGRVDEALAVFDEMKEKGMSPEQYSYNSLI 388

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
             + KA     ALEL+  M       +   +   +N     G   +A + +E MK S   
Sbjct: 389 SGFLKADMFDRALELFNHMNACGPSPNGYTHVLFINYYGKSGQSLKAIQRYEHMK-SKGI 447

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
            PD  +  A+L      G +  A  +F E+  +GV+ + +  T +I+C  KA + D+ + 
Sbjct: 448 VPDVAAANAVLYSLAGSGRLGMAKRVFYELKAMGVSPDTITYTMMIKCCSKASKADEAMN 507

Query: 490 VFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGK 524
            F   ++ G  PD      +L++ SL +T    GK
Sbjct: 508 FFSDMVESGCVPD------VLALNSLIDTLYKGGK 536



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 144/285 (50%), Gaps = 1/285 (0%)

Query: 218 IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL 277
           + L+  TY+ +I    +     EA+E ++ M + G+ P   TYS ++  + K   V+ VL
Sbjct: 167 MSLNAYTYNGLIYFLVKSGFDAEAMEVYKAMVEDGISPSVRTYSVLMVAFGKKRDVDTVL 226

Query: 278 SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
            L     A G KP+  ++++  ++ G++  +D   ++L +M+  G +P++V +  +++ +
Sbjct: 227 WLLNEMEARGVKPNVYSYTICIRVLGQAARFDEAYHILGKMEDSGCKPDVVTHTVIIQVL 286

Query: 338 GKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDF 397
             AG+   A+++F +M  S   PD  T   L+   G +  ++  +E+W  M  + +  + 
Sbjct: 287 CDAGRLSDAKAVFWKMKASDQKPDRVTYITLLDKCGDSGDSQSVVEVWNAMVADGYNDNI 346

Query: 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE 457
           + Y  +++    +G V+EA  +F++MK      P+ YSY ++++ +      D A+ELF 
Sbjct: 347 VSYTAVVDALCQVGRVDEALAVFDEMK-EKGMSPEQYSYNSLISGFLKADMFDRALELFN 405

Query: 458 EMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            M+  G + N       I   GK+ +    ++ +     +G+ PD
Sbjct: 406 HMNACGPSPNGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVPD 450



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 149/334 (44%), Gaps = 2/334 (0%)

Query: 169  KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
            +++  FN  K   +  ++T  YN  ++ L       + E L  EM       D  TY+ I
Sbjct: 749  EAHQLFNKFKGLGV-SLKTGSYNSLIRGLVDENLIDIAEDLFTEMKRLGCGPDEFTYNLI 807

Query: 229  ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
            +    +    +E ++  + M++ G     VTY+ I+    KS ++E+ + LY   ++ G+
Sbjct: 808  LDAMGKSMRVEEMLKVQKEMHRKGYESTYVTYNTIISGLVKSKRLEQAIDLYYNLMSEGF 867

Query: 289  KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348
             P P  +  L     +SG       +  EM   G +PN  +YN LL     AG       
Sbjct: 868  SPTPCTYGPLLDGLLKSGKMVDAENLFNEMLEYGCEPNCTIYNILLNGHRIAGNTENVCQ 927

Query: 349  LFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCA 408
            LF++MVE G+ PD K+ T LI     A    D L  + ++ E     D I+YN L++   
Sbjct: 928  LFEKMVEQGINPDIKSYTILIDTLCTAGRLNDGLCYFRQLHELGLEPDLIVYNLLIDGLG 987

Query: 409  DIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINV 468
                +EEA  LF +MK      P+ Y+Y +++   G  G    A +++EE+   G   +V
Sbjct: 988  KSERIEEAVSLFNEMKKKGII-PNLYTYNSLILHLGKAGKAAEAAQMYEELLRKGWKPSV 1046

Query: 469  MGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
                 LI+    +   D+    +G  I  G +P+
Sbjct: 1047 FTYNALIRGYSVSGSTDNAYAAYGQMIVGGCQPN 1080



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 138/294 (46%), Gaps = 5/294 (1%)

Query: 198 RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDE 257
           R G   Q+ + +  ++V   +     T++TI            A      M + G+  + 
Sbjct: 116 RVGDMAQVFDLMQKQVVKTNVG----TFATIFGGVGVEGGLRSAPVALPVMREAGMSLNA 171

Query: 258 VTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQE 317
            TY+ ++    KSG   E + +Y+  V  G  P    +SVL   FG+  D D + ++L E
Sbjct: 172 YTYNGLIYFLVKSGFDAEAMEVYKAMVEDGISPSVRTYSVLMVAFGKKRDVDTVLWLLNE 231

Query: 318 MKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARW 377
           M++ GV+PN+  Y   +  +G+A +   A  +  +M +SG  PD  T T +I++   A  
Sbjct: 232 MEARGVKPNVYSYTICIRVLGQAARFDEAYHILGKMEDSGCKPDVVTHTVIIQVLCDAGR 291

Query: 378 AKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYT 437
             DA  ++ +M+ +    D + Y TLL+ C D G  +    ++  M ++D    +  SYT
Sbjct: 292 LSDAKAVFWKMKASDQKPDRVTYITLLDKCGDSGDSQSVVEVWNAM-VADGYNDNIVSYT 350

Query: 438 AMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           A+++     G VD A+ +F+EM E G++        LI    KA   D  + +F
Sbjct: 351 AVVDALCQVGRVDEALAVFDEMKEKGMSPEQYSYNSLISGFLKADMFDRALELF 404



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 159/342 (46%), Gaps = 12/342 (3%)

Query: 163 SLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDN 222
           SLK  Q+    +  +KS+ + P +    N  + SL    +  + +++  E+ +  +  D 
Sbjct: 432 SLKAIQR----YEHMKSKGIVP-DVAAANAVLYSLAGSGRLGMAKRVFYELKAMGVSPDT 486

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           ITY+ +I C  + +  DEA+ +F  M ++G +PD +  ++++D   K GK  E   L+ +
Sbjct: 487 ITYTMMIKCCSKASKADEAMNFFSDMVESGCVPDVLALNSLIDTLYKGGKGNEAWQLFHK 546

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
                 +P    ++ L    G  G    +  +L+EM      PNL+ YNT+L+ + K G+
Sbjct: 547 LKEMKIEPTNGTYNTLLSGLGREGKVKEVMQLLEEMTRTIYPPNLITYNTVLDCLSKNGE 606

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
              A  +   M E G  PD  +   ++    K    ++A  ++ +M++   P D+    T
Sbjct: 607 VNCAIDMLYSMTEKGCAPDLSSYNTVMYGLIKEERLEEAFRMFCQMKKILAP-DYATLCT 665

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
           +L      GL++EA    ++  L   C  D  S+ +++        V+ +IE  E ++  
Sbjct: 666 ILPSFVKNGLMKEALHTVKEYILKAGCNVDKSSFHSLMEGILKKAGVEKSIEFAENIASR 725

Query: 463 GVAINVMGCTCLIQCLGKARRIDDLVRVF------GVSIDRG 498
           G+ +N      LI+ L K ++  +  ++F      GVS+  G
Sbjct: 726 GILLNDFFLCPLIRHLCKHKKALEAHQLFNKFKGLGVSLKTG 767



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 131/292 (44%), Gaps = 5/292 (1%)

Query: 213 MVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK 272
           MV + I     TYS ++    +    D  +     M   G+ P+  +Y+  + V  ++ +
Sbjct: 197 MVEDGISPSVRTYSVLMVAFGKKRDVDTVLWLLNEMEARGVKPNVYSYTICIRVLGQAAR 256

Query: 273 VEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNT 332
            +E   +  +   SG KPD +  +V+ ++  ++G     + V  +MK+   +P+ V Y T
Sbjct: 257 FDEAYHILGKMEDSGCKPDVVTHTVIIQVLCDAGRLSDAKAVFWKMKASDQKPDRVTYIT 316

Query: 333 LLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENK 392
           LL+  G +G       +++ MV  G   +  + TA++    +     +AL +++ M+E  
Sbjct: 317 LLDKCGDSGDSQSVVEVWNAMVADGYNDNIVSYTAVVDALCQVGRVDEALAVFDEMKEKG 376

Query: 393 WPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC--KPDNYSYTAMLNIYGSGGNVD 450
              +   YN+L++      + + A  LF  M   + C   P+ Y++   +N YG  G   
Sbjct: 377 MSPEQYSYNSLISGFLKADMFDRALELFNHM---NACGPSPNGYTHVLFINYYGKSGQSL 433

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            AI+ +E M   G+  +V     ++  L  + R+    RVF      GV PD
Sbjct: 434 KAIQRYEHMKSKGIVPDVAAANAVLYSLAGSGRLGMAKRVFYELKAMGVSPD 485



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 89/395 (22%), Positives = 155/395 (39%), Gaps = 73/395 (18%)

Query: 179 SQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLF 238
           ++ ++P   I YN  +  L    +      +   M       D  +Y+T++    +    
Sbjct: 583 TRTIYPPNLITYNTVLDCLSKNGEVNCAIDMLYSMTEKGCAPDLSSYNTVMYGLIKEERL 642

Query: 239 DEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL-SLYERGVASGWKPDPIAF-S 296
           +EA   F +M K  L PD  T   IL  + K+G ++E L ++ E  + +G   D  +F S
Sbjct: 643 EEAFRMFCQMKKI-LAPDYATLCTILPSFVKNGLMKEALHTVKEYILKAGCNVDKSSFHS 701

Query: 297 VLGKMFGESGDYDGIRY----------------------------------VLQEMKSLG 322
           ++  +  ++G    I +                                  +  + K LG
Sbjct: 702 LMEGILKKAGVEKSIEFAENIASRGILLNDFFLCPLIRHLCKHKKALEAHQLFNKFKGLG 761

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382
           V      YN+L+  +       +A  LF EM   G  PDE T   ++   GK+   ++ L
Sbjct: 762 VSLKTGSYNSLIRGLVDENLIDIAEDLFTEMKRLGCGPDEFTYNLILDAMGKSMRVEEML 821

Query: 383 ELWERMRENKWPMDFILYNT-----------------------------------LLNMC 407
           ++ + M    +   ++ YNT                                   LL+  
Sbjct: 822 KVQKEMHRKGYESTYVTYNTIISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDGL 881

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
              G + +AE LF +M L   C+P+   Y  +LN +   GN +N  +LFE+M E G+  +
Sbjct: 882 LKSGKMVDAENLFNEM-LEYGCEPNCTIYNILLNGHRIAGNTENVCQLFEKMVEQGINPD 940

Query: 468 VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           +   T LI  L  A R++D +  F    + G++PD
Sbjct: 941 IKSYTILIDTLCTAGRLNDGLCYFRQLHELGLEPD 975



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/287 (22%), Positives = 125/287 (43%), Gaps = 45/287 (15%)

Query: 263 ILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIR---YVLQEMK 319
           ++  + + G + +V  L ++ V    K +   F+ +   FG  G   G+R     L  M+
Sbjct: 110 LMRAHGRVGDMAQVFDLMQKQVV---KTNVGTFATI---FGGVGVEGGLRSAPVALPVMR 163

Query: 320 SLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK----- 374
             G+  N   YN L+  + K+G    A  ++  MVE G++P  +T + L+  +GK     
Sbjct: 164 EAGMSLNAYTYNGLIYFLVKSGFDAEAMEVYKAMVEDGISPSVRTYSVLMVAFGKKRDVD 223

Query: 375 ----------ARWAK--------------------DALELWERMRENKWPMDFILYNTLL 404
                     AR  K                    +A  +  +M ++    D + +  ++
Sbjct: 224 TVLWLLNEMEARGVKPNVYSYTICIRVLGQAARFDEAYHILGKMEDSGCKPDVVTHTVII 283

Query: 405 NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
            +  D G + +A+ +F  MK SD  KPD  +Y  +L+  G  G+  + +E++  M   G 
Sbjct: 284 QVLCDAGRLSDAKAVFWKMKASDQ-KPDRVTYITLLDKCGDSGDSQSVVEVWNAMVADGY 342

Query: 465 AINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
             N++  T ++  L +  R+D+ + VF    ++G+ P+      L+S
Sbjct: 343 NDNIVSYTAVVDALCQVGRVDEALAVFDEMKEKGMSPEQYSYNSLIS 389



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 90/196 (45%), Gaps = 1/196 (0%)

Query: 173  FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
             FN +      P  TI YN+ +   R     + + QL  +MV   I  D  +Y+ +I   
Sbjct: 893  LFNEMLEYGCEPNCTI-YNILLNGHRIAGNTENVCQLFEKMVEQGINPDIKSYTILIDTL 951

Query: 233  KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
                  ++ + +F ++++ GL PD + Y+ ++D   KS ++EE +SL+      G  P+ 
Sbjct: 952  CTAGRLNDGLCYFRQLHELGLEPDLIVYNLLIDGLGKSERIEEAVSLFNEMKKKGIIPNL 1011

Query: 293  IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
              ++ L    G++G       + +E+   G +P++  YN L+     +G    A + + +
Sbjct: 1012 YTYNSLILHLGKAGKAAEAAQMYEELLRKGWKPSVFTYNALIRGYSVSGSTDNAYAAYGQ 1071

Query: 353  MVESGLTPDEKTLTAL 368
            M+  G  P+  T   L
Sbjct: 1072 MIVGGCQPNSSTYMQL 1087


>gi|255661134|gb|ACU25736.1| pentatricopeptide repeat-containing protein [Verbena bracteata]
 gi|255661138|gb|ACU25738.1| pentatricopeptide repeat-containing protein [Verbena halei]
 gi|255661140|gb|ACU25739.1| pentatricopeptide repeat-containing protein [Verbena officinalis]
          Length = 426

 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/283 (31%), Positives = 146/283 (51%), Gaps = 7/283 (2%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D  TYST+IT   +  LFD A+ W ++M +  +  D V YS ++++  K     + +S++
Sbjct: 8   DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
            R   SG+ PD +A++ +  +FG++  +   R ++ EM++ GV PN   Y+TLL    + 
Sbjct: 68  SRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVEN 127

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
            K   A S+F EM E     D  T   +I +YG+   AK+A +L+  MR+     + + Y
Sbjct: 128 KKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSY 187

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           NTLL +  D  L  EA  LF  M+  +  + +  +Y +M+ IYG     + A  L +EM 
Sbjct: 188 NTLLRVYGDAELFGEAIHLFRLMQRKN-IEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 246

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVF------GVSIDR 497
             G+  N +  + +I   GK  ++D    +F      GV ID+
Sbjct: 247 NRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQ 289



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/366 (22%), Positives = 169/366 (46%), Gaps = 6/366 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K     P + + YN  +      + F+    L +EM +  +  +  +YS
Sbjct: 60  YSKAISIFSRLKRSGFTP-DLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYS 118

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY + G  +E   L+      
Sbjct: 119 TLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 178

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   ++ N+V YN+++   GK  +   A
Sbjct: 179 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKA 238

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R +   +D +LY T++  
Sbjct: 239 NNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVA 298

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K     +PDN      ++I    G ++ A  +F +  + G   
Sbjct: 299 YERAGLVAHAKRLLHELK-----RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVK 353

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           ++     +I    K ++  ++V VF      G  PD  +   +L+        +    V 
Sbjct: 354 DITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALILNAYGKLHEFDKANDVY 413

Query: 527 TCLQQA 532
             +Q+ 
Sbjct: 414 MEMQEV 419



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 138/271 (50%), Gaps = 1/271 (0%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
            +M  + +  D + YS +I  +++   + +AI  F R+ ++G  PD V Y+A+++V+ K+
Sbjct: 33  QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKA 92

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
               E  SL      +G  P+  ++S L  M+ E+  +     V  EM+ +    +L   
Sbjct: 93  KLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTC 152

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
           N +++  G+ G    A  LF  M + G+ P+  +   L+++YG A    +A+ L+  M+ 
Sbjct: 153 NIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR 212

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
                + + YN+++ +       E+A  L ++M+ +   +P++ +Y+ +++I+G  G +D
Sbjct: 213 KNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ-NRGIEPNSITYSTIISIWGKVGKLD 271

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
            A  LF+++   GV I+ +    +I    +A
Sbjct: 272 RAAMLFQKLRSSGVDIDQVLYQTMIVAYERA 302



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 125/261 (47%), Gaps = 1/261 (0%)

Query: 252 GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGI 311
            L PD  TYS ++  + K G  +  LS  ++        D + +S L ++  +  DY   
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 312 RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371
             +   +K  G  P+LV YN ++   GKA     ARSL  EM  +G+TP+  + + L+ +
Sbjct: 64  ISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTM 123

Query: 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
           Y + +   +AL ++  MRE K  +D    N ++++   +G+ +EA++LF  M+     +P
Sbjct: 124 YVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG-IEP 182

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           +  SY  +L +YG       AI LF  M    +  NV+    ++   GK    +    + 
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 242

Query: 492 GVSIDRGVKPDDRLCGCLLSV 512
               +RG++P+      ++S+
Sbjct: 243 QEMQNRGIEPNSITYSTIISI 263



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/242 (21%), Positives = 105/242 (43%), Gaps = 5/242 (2%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           P+  +    L +    + + ++   F  ++ +N+     + YN  M       + +    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNI-EQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  EM +  IE ++ITYSTII+   +    D A   F+++  +G+  D+V Y  ++  Y 
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYE 300

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           ++G V       +R +    +PD I   +   +   +G  +   +V ++    G   ++ 
Sbjct: 301 RAGLVAHA----KRLLHELKRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDIT 356

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
           V+  ++    K  K G    +FD+M   G  PD   +  ++  YGK      A +++  M
Sbjct: 357 VFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALILNAYGKLHEFDKANDVYMEM 416

Query: 389 RE 390
           +E
Sbjct: 417 QE 418



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 87/191 (45%), Gaps = 3/191 (1%)

Query: 355 ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
           E  L+PD  T + LI  +GK      AL   ++M +++ P D +LY+ L+ +   +    
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
           +A  +F  +K S +  PD  +Y AM+N++G       A  L  EM   GV  N    + L
Sbjct: 62  KAISIFSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN- 533
           +    + ++  + + VF    +     D   C  ++ V      +++  K+   +++   
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180

Query: 534 -PKLVAFLNLI 543
            P +V++  L+
Sbjct: 181 EPNVVSYNTLL 191


>gi|302792252|ref|XP_002977892.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
 gi|300154595|gb|EFJ21230.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
          Length = 500

 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 142/290 (48%), Gaps = 1/290 (0%)

Query: 213 MVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK 272
           + +N    D +TY+++I    +    ++A+ +  +M   G  PD  TY+A++       +
Sbjct: 2   VATNSCSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENR 61

Query: 273 VEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNT 332
           + E     E        P+ + ++VL     + G  D    +L +M+   V P  V YN+
Sbjct: 62  LHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCV-PTAVTYNS 120

Query: 333 LLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENK 392
           L+  + KA +   A  L +EMV SG  PD  T T LI  + K++ + DAL ++E++    
Sbjct: 121 LISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARG 180

Query: 393 WPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNA 452
           +  D + Y+ L++     G ++EA  LF  M  S  C P+  +Y ++++ +   G +D A
Sbjct: 181 FRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEA 240

Query: 453 IELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           + L E M+E G + +V+  T L+    K  R+DD   +      +G+ PD
Sbjct: 241 MNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPD 290



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/299 (28%), Positives = 141/299 (47%), Gaps = 10/299 (3%)

Query: 195 KSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLM 254
           K+ R    + L+E    EMV +    D  TY+T+IT   +    D+A+  FE++   G  
Sbjct: 127 KAERASEAYDLLE----EMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFR 182

Query: 255 PDEVTYSAILDVYAKSGKVEEVLSLYERGVASG-WKPDPIAFSVLGKMFGESGDYDGIRY 313
           PD VTYS ++D   K G+++E + L+ R + SG   P+ + ++ L   F   G  D    
Sbjct: 183 PDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMN 242

Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYG 373
           +L+ M   G  P++V Y TL+    K  +   A  L ++M   GLTPD  T T+L+    
Sbjct: 243 LLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLC 302

Query: 374 KARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAER-LFEDMKLSDYCKPD 432
           +     DA+ +   MR          YNT+L+       +EEA + + E+M     C P+
Sbjct: 303 RENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFMLEEMD----CPPN 358

Query: 433 NYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
             S+  M+           A+EL EE        +V+  T +I  L + +++D+  RV+
Sbjct: 359 VVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVY 417



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 138/300 (46%), Gaps = 4/300 (1%)

Query: 161 LNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIEL 220
           L  +K  +++  F   + S+   P +   Y   + +L    +     +   EM +  +  
Sbjct: 21  LCKVKRLEQALIFLGKMVSKGFHP-DVYTYTAVIHALCVENRLHEARKFLEEMANRNLTP 79

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           + +TY+ +I    +    DEA+    +M K   +P  VTY++++    K+ +  E   L 
Sbjct: 80  NVVTYTVLIDGLCKGGRVDEAVALLSKMRKK-CVPTAVTYNSLISGLCKAERASEAYDLL 138

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
           E  V SG  PD   ++ L   F +S   D    V +++ + G +P++V Y+ L++ + K 
Sbjct: 139 EEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKE 198

Query: 341 GKPGLARSLFDEMVESG-LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
           G+   A  LF  M++SG   P+  T  +LI  + +     +A+ L ERM E     D + 
Sbjct: 199 GRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVT 258

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           Y TL+N    +  +++A  L   M       PD  ++T++++       + +A+ +  EM
Sbjct: 259 YTTLMNGFCKLARLDDAYDLLNQMTRKGL-TPDVVTFTSLMDGLCRENRLSDAVHILGEM 317



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 145/310 (46%), Gaps = 13/310 (4%)

Query: 195 KSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTG-L 253
           KS +     ++ EQL    V+     D +TYS +I    +     EAI+ F RM K+G  
Sbjct: 162 KSKKSDDALRVFEQL----VARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSC 217

Query: 254 MPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRY 313
           MP+ VTY++++  + + GK++E ++L ER   +G  PD + ++ L   F +    D    
Sbjct: 218 MPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYD 277

Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYG 373
           +L +M   G+ P++V + +L++ + +  +   A  +  EM     +P   T   ++  Y 
Sbjct: 278 LLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYC 337

Query: 374 KARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDN 433
           +A   ++A +    + E   P + + +N ++     +    EA  L E+ +    C PD 
Sbjct: 338 RANQLEEARKFM--LEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEAR-RRRCNPDV 394

Query: 434 YSYTAMLNIYGSGGNVDNAIELFEEM-SELGVAINVMGCTCLIQCLGKARRIDDLVRVFG 492
             YT +++       VD A  ++ +M  E G   N +  + LI  L  A  +D   R  G
Sbjct: 395 VMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLITGLCNAGMLD---RARG 451

Query: 493 VSIDRGVKPD 502
             I++G  P+
Sbjct: 452 Y-IEKGCVPN 460



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 83/192 (43%), Gaps = 4/192 (2%)

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
           + V Y +L++ + K  +   A     +MV  G  PD  T TA+I          +A +  
Sbjct: 10  DFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFL 69

Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445
           E M       + + Y  L++     G V+EA  L   M+    C P   +Y ++++    
Sbjct: 70  EEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMR--KKCVPTAVTYNSLISGLCK 127

Query: 446 GGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRL 505
                 A +L EEM   G   ++   T LI    K+++ DD +RVF   + RG +PD   
Sbjct: 128 AERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVT 187

Query: 506 CGCLLSVVSLCE 517
             CL+    LC+
Sbjct: 188 YSCLID--GLCK 197



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 67/137 (48%), Gaps = 5/137 (3%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           ++++ +I    + N   EA+E  E   +    PD V Y+ ++D   +  KV+E   +Y +
Sbjct: 360 VSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRK 419

Query: 283 GVAS-GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG 341
            +   G  P+ I +S L      +G  D  R  +++    G  PN+  YN L++A  KA 
Sbjct: 420 MLEEPGCLPNSITYSTLITGLCNAGMLDRARGYIEK----GCVPNIGTYNLLIDAFRKAN 475

Query: 342 KPGLARSLFDEMVESGL 358
           +   AR L D+MV+ G 
Sbjct: 476 RDEDARELLDDMVQRGF 492


>gi|115482730|ref|NP_001064958.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|41152691|dbj|BAD08215.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113639567|dbj|BAF26872.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|215693996|dbj|BAG89195.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 794

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 142/292 (48%), Gaps = 1/292 (0%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
           +EM+   I  + +TYS+II    +    D+A+E    M K G+MP+  TY++I+  Y  S
Sbjct: 223 HEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSS 282

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
           G+ +E +   ++  + G +PD + ++ L     ++G     R +   M   G++P +  Y
Sbjct: 283 GQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTY 342

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
            TLL+     G       L D MV +G+ P+    + LI  Y K      A+ ++ +MR+
Sbjct: 343 GTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQ 402

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
                D + Y T++ +    G VE+A R FE M + +   P N  Y ++++        D
Sbjct: 403 QGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQM-IDERLSPGNIVYNSLIHSLCIFDKWD 461

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            A EL  EM + G+ ++ +    +I    K  R+ +  ++F + +  GVKPD
Sbjct: 462 KAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPD 513



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 151/304 (49%), Gaps = 10/304 (3%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTM----KSLRFGRQFQLIEQLANEMVSNEIELDNIT 224
           ++   F+ ++ Q L P +T+ Y   +    KS R     +  EQ+ +E +S      NI 
Sbjct: 392 QAMLVFSKMRQQGLNP-DTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSP----GNIV 446

Query: 225 YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
           Y+++I      + +D+A E    M   G+  D + +++I+D + K G+V E   L++  V
Sbjct: 447 YNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMV 506

Query: 285 ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344
             G KPD I +S L   +  +G  D    +L  M S+G++P+ V YNTL+    K  +  
Sbjct: 507 RIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRME 566

Query: 345 LARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
            A  LF EM  SG++PD  T   +++   + R    A EL+  + E+   ++   YN +L
Sbjct: 567 DALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIIL 626

Query: 405 NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
           +      L +EA R+F+++ L+D  + +  ++  M+      G  D A +LF  +S  G+
Sbjct: 627 HGLCKNNLTDEALRMFQNLCLTDL-QLETRTFNIMIGALLKVGRNDEAKDLFAALSANGL 685

Query: 465 AINV 468
             +V
Sbjct: 686 VPDV 689



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 122/276 (44%), Gaps = 7/276 (2%)

Query: 241 AIEWFERMYKTG---LMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS- 296
           A+  + RM + G   + P+  TY  ++     +G+++   +     +  G++ D IAF+ 
Sbjct: 72  AVSRYNRMARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTP 131

Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356
           +L  +  +    D +  VL+ M  LG  PN+  YN LL+ +    +   A  L   M + 
Sbjct: 132 LLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDD 191

Query: 357 G--LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
           G    PD  + T +I  + K      A   +  M +     + + Y++++        ++
Sbjct: 192 GGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMD 251

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
           +A  +   M + +   P+  +Y ++++ Y S G    AI   ++M   GV  +V+    L
Sbjct: 252 KAMEVLTSM-VKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSL 310

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
           +  L K  R  +  ++F     RG+KP+    G LL
Sbjct: 311 MDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLL 346



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 102/241 (42%), Gaps = 45/241 (18%)

Query: 172 FFFNWIKSQNLF--------PMETIFYNVTMKS-LRFGRQFQLIEQLANEMVSNEIELDN 222
            F  W K++ L          ++TIF+N  + S  + GR  +  E+L + MV   ++ D 
Sbjct: 456 IFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIE-SEKLFDLMVRIGVKPDI 514

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           ITYST+I         DEA +    M   G+ PD VTY+ +++ Y K  ++E+ L L+  
Sbjct: 515 ITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFRE 574

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLE------- 335
             +SG  PD I ++++ +   ++      + +   +   G Q  L  YN +L        
Sbjct: 575 MESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNL 634

Query: 336 ----------------------------AMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
                                       A+ K G+   A+ LF  +  +GL PD +T + 
Sbjct: 635 TDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSL 694

Query: 368 L 368
           +
Sbjct: 695 M 695



 Score = 49.7 bits (117), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 41/189 (21%), Positives = 87/189 (46%), Gaps = 4/189 (2%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
            + +   F  ++S  + P + I YN+ ++ L   R+    ++L   +  +  +L+  TY+
Sbjct: 565 MEDALVLFREMESSGVSP-DIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYN 623

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
            I+    + NL DEA+  F+ +  T L  +  T++ ++    K G+ +E   L+    A+
Sbjct: 624 IILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSAN 683

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM---GKAGKP 343
           G  PD   +S++ +   E G  + +  +   M+  G   N  + N+++  +   G   + 
Sbjct: 684 GLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRA 743

Query: 344 GLARSLFDE 352
           G    + DE
Sbjct: 744 GTYLFMIDE 752



 Score = 40.4 bits (93), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 44/237 (18%), Positives = 98/237 (41%), Gaps = 43/237 (18%)

Query: 177 IKSQNLFPM--------ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           I+S+ LF +        + I Y+  +       +     +L   MVS  ++ D +TY+T+
Sbjct: 496 IESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTL 555

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAIL-------------DVYA------- 268
           I    + +  ++A+  F  M  +G+ PD +TY+ IL             ++Y        
Sbjct: 556 INGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGT 615

Query: 269 ---------------KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRY 313
                          K+   +E L +++    +  + +   F+++     + G  D  + 
Sbjct: 616 QLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKD 675

Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK 370
           +   + + G+ P++  Y+ + E + + G       LF  M E+G T + + L ++++
Sbjct: 676 LFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVR 732


>gi|357166784|ref|XP_003580849.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic-like [Brachypodium distachyon]
          Length = 904

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/359 (25%), Positives = 162/359 (45%), Gaps = 40/359 (11%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           ++ EM S  I+ +N TYS +I+     + F  A   FE M K+GL PD   Y+ +++ + 
Sbjct: 466 ISKEMESYGIKHNNKTYSMLISGFIHLHDFANAFSIFEEMLKSGLQPDRAIYNLLIEAFC 525

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           K G ++  + + E+      +P   AF  + + F  +GD      +L  M+  G  P ++
Sbjct: 526 KMGNMDRAIRILEKMQKERMQPSNRAFRPIIEGFAVAGDMKRALNILDLMRRSGCAPTVM 585

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            YN L+  + K  +   A S+ ++M  +G+TP+E T T +++ Y        A E + ++
Sbjct: 586 TYNALIHGLIKKNQVERAVSVLNKMSIAGITPNEHTYTIIMRGYAANGDIGKAFEYFTKI 645

Query: 389 RENKWPMDFILYNTLLNMCADIGLVE---------------------------------- 414
           +E    +D  +Y TLL  C   G ++                                  
Sbjct: 646 KEGGLKLDVYIYETLLRACCKSGRMQSALAVTREMSTQKIARNTFVYNILIDGWARRGDV 705

Query: 415 -EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTC 473
            EA  L + MK  D   P+ ++YT+ +N     G++  A ++ EEM+++G+  N+   T 
Sbjct: 706 WEAADLMKQMK-EDGVPPNIHTYTSYINACCKAGDMQRAQKVIEEMADVGLKPNLKTYTT 764

Query: 474 LIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGC----LLSVVSLCETSEDVGKVITC 528
           LI+   KA   D  ++ F      G+KPD+    C    LLS  ++ E S   G +  C
Sbjct: 765 LIKGWAKASLPDRALKSFEEMKLAGLKPDEAAYHCLVTSLLSRATVMEGSTYTGILSIC 823



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/309 (23%), Positives = 142/309 (45%), Gaps = 14/309 (4%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS------TIITCAKRCNLFDEA 241
           I+ N+     + G      E+L  EM  + I+     Y       TII   K+C +    
Sbjct: 376 IYSNIIHAHCQSG-NMDRAEELVREMEEDGIDAPIDAYHSMMHGYTIIQDEKKCLIV--- 431

Query: 242 IEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKM 301
              FER+ +    P  ++Y  ++++Y K GKV + +++ +   + G K +   +S+L   
Sbjct: 432 ---FERLKECCFTPSIISYGCLINLYIKIGKVTKAIAISKEMESYGIKHNNKTYSMLISG 488

Query: 302 FGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD 361
           F    D+     + +EM   G+QP+  +YN L+EA  K G    A  + ++M +  + P 
Sbjct: 489 FIHLHDFANAFSIFEEMLKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPS 548

Query: 362 EKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFE 421
            +    +I+ +  A   K AL + + MR +      + YN L++       VE A  +  
Sbjct: 549 NRAFRPIIEGFAVAGDMKRALNILDLMRRSGCAPTVMTYNALIHGLIKKNQVERAVSVLN 608

Query: 422 DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
            M ++    P+ ++YT ++  Y + G++  A E F ++ E G+ ++V     L++   K+
Sbjct: 609 KMSIAG-ITPNEHTYTIIMRGYAANGDIGKAFEYFTKIKEGGLKLDVYIYETLLRACCKS 667

Query: 482 RRIDDLVRV 490
            R+   + V
Sbjct: 668 GRMQSALAV 676



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 90/408 (22%), Positives = 173/408 (42%), Gaps = 12/408 (2%)

Query: 139 EAFLRAITEIPHQPTRENALLILNSLKFWQKSYF--FFNWIKSQNLFPMETIFYNVTMKS 196
           +A + A   IP    RE  L+I+   K   K +    F  ++++ + P   +F ++ + +
Sbjct: 255 QAVVSAFERIPKPSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSL-VHA 313

Query: 197 LRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF-ERMYKTGLMP 255
               R  + +     EM +  IEL  +TYS II    + N    A   F E   K G + 
Sbjct: 314 YAVARDMRGVLSCVEEMKAEGIELTIVTYSIIIAGFAKINDAQSADNLFKEAKAKLGDL- 372

Query: 256 DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVL 315
           + + YS I+  + +SG ++    L       G      A+  +   +    D      V 
Sbjct: 373 NGIIYSNIIHAHCQSGNMDRAEELVREMEEDGIDAPIDAYHSMMHGYTIIQDEKKCLIVF 432

Query: 316 QEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA 375
           + +K     P+++ Y  L+    K GK   A ++  EM   G+  + KT + LI  +   
Sbjct: 433 ERLKECCFTPSIISYGCLINLYIKIGKVTKAIAISKEMESYGIKHNNKTYSMLISGFIHL 492

Query: 376 RWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYS 435
               +A  ++E M ++    D  +YN L+     +G ++ A R+ E M+  +  +P N +
Sbjct: 493 HDFANAFSIFEEMLKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQ-KERMQPSNRA 551

Query: 436 YTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSI 495
           +  ++  +   G++  A+ + + M   G A  VM    LI  L K  +++  V V     
Sbjct: 552 FRPIIEGFAVAGDMKRALNILDLMRRSGCAPTVMTYNALIHGLIKKNQVERAVSVLNKMS 611

Query: 496 DRGVKPDDRLCGCLLSVVSLCETSEDVGKV---ITCLQQANPKLVAFL 540
             G+ P++     ++   +    + D+GK     T +++   KL  ++
Sbjct: 612 IAGITPNEHTYTIIMRGYA---ANGDIGKAFEYFTKIKEGGLKLDVYI 656



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/320 (21%), Positives = 147/320 (45%), Gaps = 12/320 (3%)

Query: 164 LKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSL----RFGRQFQLIEQLANEMVSNEIE 219
           L  +  ++  F  +    L P   I YN+ +++        R  +++E++  E     ++
Sbjct: 492 LHDFANAFSIFEEMLKSGLQPDRAI-YNLLIEAFCKMGNMDRAIRILEKMQKE----RMQ 546

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
             N  +  II           A+   + M ++G  P  +TY+A++    K  +VE  +S+
Sbjct: 547 PSNRAFRPIIEGFAVAGDMKRALNILDLMRRSGCAPTVMTYNALIHGLIKKNQVERAVSV 606

Query: 280 YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
             +   +G  P+   ++++ + +  +GD         ++K  G++ ++ +Y TLL A  K
Sbjct: 607 LNKMSIAGITPNEHTYTIIMRGYAANGDIGKAFEYFTKIKEGGLKLDVYIYETLLRACCK 666

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
           +G+   A ++  EM    +  +      LI  + +     +A +L ++M+E+  P +   
Sbjct: 667 SGRMQSALAVTREMSTQKIARNTFVYNILIDGWARRGDVWEAADLMKQMKEDGVPPNIHT 726

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDY-CKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458
           Y + +N C   G ++ A+++ E+M  +D   KP+  +YT ++  +      D A++ FEE
Sbjct: 727 YTSYINACCKAGDMQRAQKVIEEM--ADVGLKPNLKTYTTLIKGWAKASLPDRALKSFEE 784

Query: 459 MSELGVAINVMGCTCLIQCL 478
           M   G+  +     CL+  L
Sbjct: 785 MKLAGLKPDEAAYHCLVTSL 804



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 83/379 (21%), Positives = 156/379 (41%), Gaps = 22/379 (5%)

Query: 242 IEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKM 301
           +  FER+ K    P    +  ++  YAK G      + +E   A G +P+   F+ L   
Sbjct: 258 VSAFERIPK----PSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHA 313

Query: 302 FGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD 361
           +  + D  G+   ++EMK+ G++  +V Y+ ++    K      A +LF E        +
Sbjct: 314 YAVARDMRGVLSCVEEMKAEGIELTIVTYSIIIAGFAKINDAQSADNLFKEAKAKLGDLN 373

Query: 362 EKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFE 421
               + +I  + ++     A EL   M E+        Y+++++    I   ++   +FE
Sbjct: 374 GIIYSNIIHAHCQSGNMDRAEELVREMEEDGIDAPIDAYHSMMHGYTIIQDEKKCLIVFE 433

Query: 422 DMKLSDYC-KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK 480
             +L + C  P   SY  ++N+Y   G V  AI + +EM   G+  N    + LI     
Sbjct: 434 --RLKECCFTPSIISYGCLINLYIKIGKVTKAIAISKEMESYGIKHNNKTYSMLISGFIH 491

Query: 481 ARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ--ANPKLVA 538
                +   +F   +  G++PD  +   L+         +   +++  +Q+    P   A
Sbjct: 492 LHDFANAFSIFEEMLKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSNRA 551

Query: 539 FLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFC-------NCLIDICRNRNLNERAHE 591
           F  +IE    GF  +  + +  +   ++  RR  C       N LI     +N  ERA  
Sbjct: 552 FRPIIE----GFA-VAGDMKRALNILDL-MRRSGCAPTVMTYNALIHGLIKKNQVERAVS 605

Query: 592 LLYLGTLYGLYPGLHNKTL 610
           +L   ++ G+ P  H  T+
Sbjct: 606 VLNKMSIAGITPNEHTYTI 624


>gi|255661158|gb|ACU25748.1| pentatricopeptide repeat-containing protein [Glandularia
           microphylla]
          Length = 426

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/283 (31%), Positives = 146/283 (51%), Gaps = 7/283 (2%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D  TYST+IT   +  LFD A+ W ++M +  +  D V YS ++++  K     + +S++
Sbjct: 8   DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
            R   SG+ PD +A++ +  +FG++  +   R ++ EM++ GV PN   Y+TLL    + 
Sbjct: 68  SRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVEN 127

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
            K   A S+F EM E     D  T   +I +YG+   AK+A +L+  MR+     + + Y
Sbjct: 128 KKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSY 187

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           NTLL +  D  L  EA  LF  M+  +  + +  +Y +M+ IYG     + A  L +EM 
Sbjct: 188 NTLLRVYGDAELFGEAIHLFRLMQRKN-IEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 246

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVF------GVSIDR 497
             G+  N +  + +I   GK  ++D    +F      GV ID+
Sbjct: 247 NRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQ 289



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/366 (22%), Positives = 169/366 (46%), Gaps = 6/366 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K     P + + YN  +      + F+    L +EM +  +  +  +YS
Sbjct: 60  YSKAISIFSRLKRSGFTP-DLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYS 118

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY + G  +E   L+      
Sbjct: 119 TLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 178

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   ++ N+V YN+++   GK  +   A
Sbjct: 179 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKA 238

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R +   +D +LY T++  
Sbjct: 239 NNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVA 298

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K     +PDN      ++I    G ++ A  +F +  + G   
Sbjct: 299 YERAGLVAHAKRLLHELK-----RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVK 353

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           ++     +I    K ++  ++V VF      G  PD  +   +L+        +    V 
Sbjct: 354 DITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVY 413

Query: 527 TCLQQA 532
             +Q+ 
Sbjct: 414 MEMQEV 419



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 138/271 (50%), Gaps = 1/271 (0%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
            +M  + +  D + YS +I  +++   + +AI  F R+ ++G  PD V Y+A+++V+ K+
Sbjct: 33  QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKA 92

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
               E  SL      +G  P+  ++S L  M+ E+  +     V  EM+ +    +L   
Sbjct: 93  KLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTC 152

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
           N +++  G+ G    A  LF  M + G+ P+  +   L+++YG A    +A+ L+  M+ 
Sbjct: 153 NIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR 212

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
                + + YN+++ +       E+A  L ++M+ +   +P++ +Y+ +++I+G  G +D
Sbjct: 213 KNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ-NRGIEPNSITYSTIISIWGKVGKLD 271

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
            A  LF+++   GV I+ +    +I    +A
Sbjct: 272 RAAMLFQKLRSSGVDIDQVLYQTMIVAYERA 302



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 125/261 (47%), Gaps = 1/261 (0%)

Query: 252 GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGI 311
            L PD  TYS ++  + K G  +  LS  ++        D + +S L ++  +  DY   
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 312 RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371
             +   +K  G  P+LV YN ++   GKA     ARSL  EM  +G+TP+  + + L+ +
Sbjct: 64  ISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTM 123

Query: 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
           Y + +   +AL ++  MRE K  +D    N ++++   +G+ +EA++LF  M+     +P
Sbjct: 124 YVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG-IEP 182

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           +  SY  +L +YG       AI LF  M    +  NV+    ++   GK    +    + 
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 242

Query: 492 GVSIDRGVKPDDRLCGCLLSV 512
               +RG++P+      ++S+
Sbjct: 243 QEMQNRGIEPNSITYSTIISI 263



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/242 (21%), Positives = 105/242 (43%), Gaps = 5/242 (2%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           P+  +    L +    + + ++   F  ++ +N+     + YN  M       + +    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNI-EQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  EM +  IE ++ITYSTII+   +    D A   F+++  +G+  D+V Y  ++  Y 
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYE 300

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           ++G V       +R +    +PD I   +   +   +G  +   +V ++    G   ++ 
Sbjct: 301 RAGLVAHA----KRLLHELKRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDIT 356

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
           V+  ++    K  K G    +FD+M   G  PD   +  ++  YGK      A +++  M
Sbjct: 357 VFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVYMEM 416

Query: 389 RE 390
           +E
Sbjct: 417 QE 418



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 87/191 (45%), Gaps = 3/191 (1%)

Query: 355 ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
           E  L+PD  T + LI  +GK      AL   ++M +++ P D +LY+ L+ +   +    
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
           +A  +F  +K S +  PD  +Y AM+N++G       A  L  EM   GV  N    + L
Sbjct: 62  KAISIFSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN- 533
           +    + ++  + + VF    +     D   C  ++ V      +++  K+   +++   
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180

Query: 534 -PKLVAFLNLI 543
            P +V++  L+
Sbjct: 181 EPNVVSYNTLL 191


>gi|115461420|ref|NP_001054310.1| Os04g0684500 [Oryza sativa Japonica Group]
 gi|113565881|dbj|BAF16224.1| Os04g0684500 [Oryza sativa Japonica Group]
          Length = 901

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/371 (25%), Positives = 165/371 (44%), Gaps = 40/371 (10%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           ++ EM S  I+ +N TYS +I      + F  A   FE M ++GL PD   Y+ +++ + 
Sbjct: 461 ISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFC 520

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           K G ++  + + E+      +P   AF  + + +  +GD       L  M+  G  P ++
Sbjct: 521 KMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVM 580

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            YN L+  + +  K   A S+ D+M  +G+TP+E T T +++ Y  +     A E + ++
Sbjct: 581 TYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKI 640

Query: 389 RENKWPMDFILYNTLLNMCADIGLVE---------------------------------- 414
           +E+   +D  +Y TLL  C   G ++                                  
Sbjct: 641 KESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDV 700

Query: 415 -EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTC 473
            EAE L + MK  D   P+ ++YT+ +N     G++  A ++ EEM ++G+  NV   T 
Sbjct: 701 WEAEDLMKQMK-EDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTT 759

Query: 474 LIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGC----LLSVVSLCETSEDVGKVITCL 529
           LI+   +    D  ++ F      G+KPD+    C    LLS  ++ E S   G +  C 
Sbjct: 760 LIKGWARVSLPDRALKCFEEMKLAGLKPDEASYHCLVTSLLSRATVMEGSTYTGIISVCR 819

Query: 530 QQANPKLVAFL 540
           + +   L   L
Sbjct: 820 EMSENDLTVDL 830



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 73/303 (24%), Positives = 144/303 (47%), Gaps = 2/303 (0%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           I+ N+     + G   +  E+L  EM  + I+     Y +++         ++ +  FER
Sbjct: 371 IYSNIIHAHCQSG-NMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFER 429

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           + + G  P  ++Y  +L++Y K GKV + LS+ +   + G K +   +S+L   F    D
Sbjct: 430 LKECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHD 489

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
           +     + +EM   G+QP+  +YN L+EA  K G    A  + ++M +  + P  +    
Sbjct: 490 FANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRP 549

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           +I+ Y  A   K AL+  + MR +      + YN L++       V+ A  + + M ++ 
Sbjct: 550 IIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAG 609

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
              P+ ++YT ++  Y + G++  A E F ++ E G+ ++V     L++   K+ R+   
Sbjct: 610 -ITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSA 668

Query: 488 VRV 490
           + V
Sbjct: 669 LAV 671



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 99/459 (21%), Positives = 194/459 (42%), Gaps = 21/459 (4%)

Query: 88  SKPKSTWVNPTKPRRSVLSLQRQKRSTYSYNPRVRDLKLFARKLNDCDNTEEAFLRAITE 147
           ++ ++ WVN  +        +R+ RS + +  R    + F R +    +  +A + A   
Sbjct: 208 AEQRARWVNDGR--------RREPRSPW-HEGRDEACREFRRVVESRPDNWQAVVSAFER 258

Query: 148 IPHQPTRENALLILNSLKFWQKSYF--FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQL 205
           IP    RE  L+I+   K   K +    F  ++++ + P   +F ++ + +    R  + 
Sbjct: 259 IPKPSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSL-VHAYAVARDMRG 317

Query: 206 IEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMP-DEVTYSAIL 264
                 EM S  +EL  +TYS +I+   + N    A   F+   KT L   + + YS I+
Sbjct: 318 ALSCVEEMKSEGLELTIVTYSILISGFAKINDSQSADNLFKEA-KTKLSSLNGIIYSNII 376

Query: 265 DVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQ 324
             + +SG +E    L       G       +  +   +    + +    V + +K  G +
Sbjct: 377 HAHCQSGNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGFK 436

Query: 325 PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384
           P+++ Y  LL    K GK   A S+  EM   G+  + KT + LI  +       +A  +
Sbjct: 437 PSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAI 496

Query: 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYG 444
           +E M  +    D  +YN L+     +G ++ A  + E M+  +  +P N ++  ++  Y 
Sbjct: 497 FEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQ-KERMQPSNRAFRPIIEGYA 555

Query: 445 SGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR 504
             G++ +A++  + M   G    VM    LI  L +  ++   V V       G+ P++ 
Sbjct: 556 VAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEH 615

Query: 505 LCGCLLSVVSLCETSEDVGKV---ITCLQQANPKLVAFL 540
               ++   +    S D+GK     T ++++  KL  ++
Sbjct: 616 TYTIIMRGYA---ASGDIGKAFEYFTKIKESGLKLDVYI 651



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 98/215 (45%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN  +  L    + Q    + ++M    I  +  TY+ I+          +A E+F ++ 
Sbjct: 582 YNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIK 641

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
           ++GL  D   Y  +L    KSG+++  L++           +   +++L   +   GD  
Sbjct: 642 ESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVW 701

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               ++++MK  GV PN+  Y + + A  KAG    A  + +EMV+ GL P+ KT T LI
Sbjct: 702 EAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLI 761

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
           K + +      AL+ +E M+      D   Y+ L+
Sbjct: 762 KGWARVSLPDRALKCFEEMKLAGLKPDEASYHCLV 796



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 85/378 (22%), Positives = 159/378 (42%), Gaps = 26/378 (6%)

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
           FER+ K    P    +  ++  YAK G      + +E   A G +P+   F+ L   +  
Sbjct: 256 FERIPK----PSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAV 311

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
           + D  G    ++EMKS G++  +V Y+ L+    K      A +LF E      + +   
Sbjct: 312 ARDMRGALSCVEEMKSEGLELTIVTYSILISGFAKINDSQSADNLFKEAKTKLSSLNGII 371

Query: 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
            + +I  + ++   + A EL   M E+       +Y+++++    I    +   +FE +K
Sbjct: 372 YSNIIHAHCQSGNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLK 431

Query: 425 LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484
              + KP   SY  +LN+Y   G V  A+ + +EM   G+  N    + LI         
Sbjct: 432 ECGF-KPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDF 490

Query: 485 DDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ-----ANPKLVAF 539
            +   +F   +  G++PD  +   L+   + C+   ++ + I  L++       P   AF
Sbjct: 491 ANAFAIFEEMLRSGLQPDRAIYNLLIE--AFCKMG-NMDRAICILEKMQKERMQPSNRAF 547

Query: 540 LNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFC-------NCLIDICRNRNLNERAHEL 592
             +IE  +     +  + ++ + DT    RR  C       N LI     ++  +RA  +
Sbjct: 548 RPIIEGYA-----VAGDMKSAL-DTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSV 601

Query: 593 LYLGTLYGLYPGLHNKTL 610
           L   ++ G+ P  H  T+
Sbjct: 602 LDKMSIAGITPNEHTYTI 619



 Score = 49.7 bits (117), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 91/203 (44%), Gaps = 9/203 (4%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           K++ +F  IK   L  ++   Y   +++     + Q    +  EM   +I  +   Y+ +
Sbjct: 632 KAFEYFTKIKESGL-KLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNIL 690

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
           I    R     EA +  ++M + G+ P+  TY++ ++   K+G ++    + E  V  G 
Sbjct: 691 IDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGL 750

Query: 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA-------MGKAG 341
           KP+   ++ L K +      D      +EMK  G++P+   Y+ L+ +       M  + 
Sbjct: 751 KPNVKTYTTLIKGWARVSLPDRALKCFEEMKLAGLKPDEASYHCLVTSLLSRATVMEGST 810

Query: 342 KPGLARSLFDEMVESGLTPDEKT 364
             G+  S+  EM E+ LT D +T
Sbjct: 811 YTGII-SVCREMSENDLTVDLRT 832


>gi|32488707|emb|CAE03450.1| OSJNBa0088H09.8 [Oryza sativa Japonica Group]
          Length = 905

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/371 (25%), Positives = 165/371 (44%), Gaps = 40/371 (10%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           ++ EM S  I+ +N TYS +I      + F  A   FE M ++GL PD   Y+ +++ + 
Sbjct: 465 ISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFC 524

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           K G ++  + + E+      +P   AF  + + +  +GD       L  M+  G  P ++
Sbjct: 525 KMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVM 584

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            YN L+  + +  K   A S+ D+M  +G+TP+E T T +++ Y  +     A E + ++
Sbjct: 585 TYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKI 644

Query: 389 RENKWPMDFILYNTLLNMCADIGLVE---------------------------------- 414
           +E+   +D  +Y TLL  C   G ++                                  
Sbjct: 645 KESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDV 704

Query: 415 -EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTC 473
            EAE L + MK  D   P+ ++YT+ +N     G++  A ++ EEM ++G+  NV   T 
Sbjct: 705 WEAEDLMKQMK-EDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTT 763

Query: 474 LIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGC----LLSVVSLCETSEDVGKVITCL 529
           LI+   +    D  ++ F      G+KPD+    C    LLS  ++ E S   G +  C 
Sbjct: 764 LIKGWARVSLPDRALKCFEEMKLAGLKPDEASYHCLVTSLLSRATVMEGSTYTGIISVCR 823

Query: 530 QQANPKLVAFL 540
           + +   L   L
Sbjct: 824 EMSENDLTVDL 834



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 137/284 (48%), Gaps = 1/284 (0%)

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
           E+L  EM  + I+     Y +++         ++ +  FER+ + G  P  ++Y  +L++
Sbjct: 393 EELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGFKPSIISYGCLLNL 452

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
           Y K GKV + LS+ +   + G K +   +S+L   F    D+     + +EM   G+QP+
Sbjct: 453 YVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPD 512

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
             +YN L+EA  K G    A  + ++M +  + P  +    +I+ Y  A   K AL+  +
Sbjct: 513 RAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSALDTLD 572

Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
            MR +      + YN L++       V+ A  + + M ++    P+ ++YT ++  Y + 
Sbjct: 573 LMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAG-ITPNEHTYTIIMRGYAAS 631

Query: 447 GNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRV 490
           G++  A E F ++ E G+ ++V     L++   K+ R+   + V
Sbjct: 632 GDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAV 675



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/256 (24%), Positives = 113/256 (44%), Gaps = 7/256 (2%)

Query: 255 PDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYV 314
           P    +  ++  YAK G      + +E   A G +P+   F+ L   +  + D  G    
Sbjct: 295 PSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALSC 354

Query: 315 LQEMKSLGVQPNLVVYNTLLEAMGK------AGKPGLARSLFDEMVESGLTPDEKTLTAL 368
           ++EMKS G++  +V Y+ L+    K      +G    A  L  EM E G+        ++
Sbjct: 355 VEEMKSEGLELTIVTYSILISGFAKINDSHQSGNMERAEELVREMEEDGIDAPIDVYHSM 414

Query: 369 IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428
           +  Y   +     L ++ER++E  +    I Y  LLN+   IG V +A  + ++M+ S  
Sbjct: 415 MHGYTIIQNENKCLVVFERLKECGFKPSIISYGCLLNLYVKIGKVAKALSISKEME-SCG 473

Query: 429 CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLV 488
            K +N +Y+ ++N +    +  NA  +FEEM   G+  +      LI+   K   +D  +
Sbjct: 474 IKHNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAI 533

Query: 489 RVFGVSIDRGVKPDDR 504
            +        ++P +R
Sbjct: 534 CILEKMQKERMQPSNR 549



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 98/215 (45%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN  +  L    + Q    + ++M    I  +  TY+ I+          +A E+F ++ 
Sbjct: 586 YNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIK 645

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
           ++GL  D   Y  +L    KSG+++  L++           +   +++L   +   GD  
Sbjct: 646 ESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVW 705

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               ++++MK  GV PN+  Y + + A  KAG    A  + +EMV+ GL P+ KT T LI
Sbjct: 706 EAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLI 765

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
           K + +      AL+ +E M+      D   Y+ L+
Sbjct: 766 KGWARVSLPDRALKCFEEMKLAGLKPDEASYHCLV 800



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 77/340 (22%), Positives = 141/340 (41%), Gaps = 28/340 (8%)

Query: 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348
           +P    F ++   + + GD    R   + M++ G++PN  V+ +L+ A   A     A S
Sbjct: 294 EPSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALS 353

Query: 349 LFDEMVESGLTPDEKTLTALIKIYGKARWAKD------ALELWERMRENKWPMDFILYNT 402
             +EM   GL     T + LI  + K   +        A EL   M E+       +Y++
Sbjct: 354 CVEEMKSEGLELTIVTYSILISGFAKINDSHQSGNMERAEELVREMEEDGIDAPIDVYHS 413

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
           +++    I    +   +FE +K   + KP   SY  +LN+Y   G V  A+ + +EM   
Sbjct: 414 MMHGYTIIQNENKCLVVFERLKECGF-KPSIISYGCLLNLYVKIGKVAKALSISKEMESC 472

Query: 463 GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDV 522
           G+  N    + LI          +   +F   +  G++PD  +   L+   + C+   ++
Sbjct: 473 GIKHNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIYNLLIE--AFCKMG-NM 529

Query: 523 GKVITCLQQ-----ANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFC---- 573
            + I  L++       P   AF  +IE  +     +  + ++ + DT    RR  C    
Sbjct: 530 DRAICILEKMQKERMQPSNRAFRPIIEGYA-----VAGDMKSAL-DTLDLMRRSGCVPTV 583

Query: 574 ---NCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTL 610
              N LI     ++  +RA  +L   ++ G+ P  H  T+
Sbjct: 584 MTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTI 623



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 96/204 (47%), Gaps = 11/204 (5%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           K++ +F  IK   L  ++   Y   +++     + Q    +  EM   +I  +   Y+ +
Sbjct: 636 KAFEYFTKIKESGL-KLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNIL 694

Query: 229 ITC-AKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           I   A+R +++ EA +  ++M + G+ P+  TY++ ++   K+G ++    + E  V  G
Sbjct: 695 IDGWARRGDVW-EAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVG 753

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA-------MGKA 340
            KP+   ++ L K +      D      +EMK  G++P+   Y+ L+ +       M  +
Sbjct: 754 LKPNVKTYTTLIKGWARVSLPDRALKCFEEMKLAGLKPDEASYHCLVTSLLSRATVMEGS 813

Query: 341 GKPGLARSLFDEMVESGLTPDEKT 364
              G+  S+  EM E+ LT D +T
Sbjct: 814 TYTGII-SVCREMSENDLTVDLRT 836


>gi|255540825|ref|XP_002511477.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550592|gb|EEF52079.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 754

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 150/323 (46%), Gaps = 4/323 (1%)

Query: 225 YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
           Y+ II+   R  L +++ E FE M   G+     +Y+A+++ Y + G+ E  L L ER  
Sbjct: 145 YTIIISLLGREGLLEKSTEIFEEMPTHGVPRSVFSYTALINSYGRHGQYEVSLELLERMK 204

Query: 285 ASGWKPDPIAFSVLGKMFGESG-DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
                P  + ++ +       G +++G+  +  EM+  G+QP+++ YNTLL A    G  
Sbjct: 205 KEKVTPSILTYNTVINSCARGGLNWEGLLSLFAEMRHEGIQPDIITYNTLLNACANRGLG 264

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
             A  +F  M E G+ PD  T   L++ +GK    +   EL + M  +    D   YN L
Sbjct: 265 DEAEMVFRTMNEGGMVPDITTYRNLVETFGKLNKLEKVSELLKEMESSGNLPDISSYNVL 324

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           L   A  G +  A  +F  M+ +  C P+  +Y+ +LN+YG  G  D+  ELF EM    
Sbjct: 325 LEAYASKGDIRHAMGVFRQMQEAR-CVPNAVTYSMLLNLYGGHGRYDDVRELFLEMKVSN 383

Query: 464 VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVG 523
              +V     LI+  G+     ++V +F   ++  V+P+      L+         ED  
Sbjct: 384 TEPDVGTYNVLIEVFGEGGYFKEVVTLFHDMVEENVEPNMGTYEGLIYACGKGGLHEDAK 443

Query: 524 KVITCLQQAN--PKLVAFLNLIE 544
           K++  + +    P   A+  +IE
Sbjct: 444 KILLHMDEKGIVPSTKAYTGVIE 466



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 88/306 (28%), Positives = 144/306 (47%), Gaps = 3/306 (0%)

Query: 177 IKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTII-TCAKRC 235
           +K + + P    +  V     R G  ++ +  L  EM    I+ D ITY+T++  CA R 
Sbjct: 203 MKKEKVTPSILTYNTVINSCARGGLNWEGLLSLFAEMRHEGIQPDIITYNTLLNACANR- 261

Query: 236 NLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAF 295
            L DEA   F  M + G++PD  TY  +++ + K  K+E+V  L +   +SG  PD  ++
Sbjct: 262 GLGDEAEMVFRTMNEGGMVPDITTYRNLVETFGKLNKLEKVSELLKEMESSGNLPDISSY 321

Query: 296 SVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVE 355
           +VL + +   GD      V ++M+     PN V Y+ LL   G  G+    R LF EM  
Sbjct: 322 NVLLEAYASKGDIRHAMGVFRQMQEARCVPNAVTYSMLLNLYGGHGRYDDVRELFLEMKV 381

Query: 356 SGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEE 415
           S   PD  T   LI+++G+  + K+ + L+  M E     +   Y  L+  C   GL E+
Sbjct: 382 SNTEPDVGTYNVLIEVFGEGGYFKEVVTLFHDMVEENVEPNMGTYEGLIYACGKGGLHED 441

Query: 416 AERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLI 475
           A+++   M       P   +YT ++  YG   + + A+ +F  M+E+G    V     LI
Sbjct: 442 AKKILLHMDEKGIV-PSTKAYTGVIEAYGQAASYEEALVMFNTMNEMGSKPTVETYNSLI 500

Query: 476 QCLGKA 481
               + 
Sbjct: 501 NMFARG 506



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 114/462 (24%), Positives = 195/462 (42%), Gaps = 47/462 (10%)

Query: 68  LKPLSSTTLSPTKNDRTPLLSKPKSTWVNPTKPRRSVLSLQRQ------KRSTYSYN--- 118
           LKP     L P  N R   LS  + T+    K R     L         ++  YSY+   
Sbjct: 20  LKPNLKPNLLPYPNRRLISLSGDRKTYSGAAKARAKTKELVLGNPSVVVEKGKYSYDVET 79

Query: 119 ---------PR---VRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTRENALLILNSLKF 166
                    PR    R L++F  KL+  D     F     E   +               
Sbjct: 80  LINKLSSLPPRGSIARCLEIFKNKLSLND-----FALVFKEFAQRGD------------- 121

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIE---QLANEMVSNEIELDNI 223
           WQ+S   F +++ Q         Y + +  L  GR+  L+E   ++  EM ++ +     
Sbjct: 122 WQRSLRLFKYMQRQIWCKPNEHIYTIIISLL--GRE-GLLEKSTEIFEEMPTHGVPRSVF 178

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG-KVEEVLSLYER 282
           +Y+ +I    R   ++ ++E  ERM K  + P  +TY+ +++  A+ G   E +LSL+  
Sbjct: 179 SYTALINSYGRHGQYEVSLELLERMKKEKVTPSILTYNTVINSCARGGLNWEGLLSLFAE 238

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
               G +PD I ++ L       G  D    V + M   G+ P++  Y  L+E  GK  K
Sbjct: 239 MRHEGIQPDIITYNTLLNACANRGLGDEAEMVFRTMNEGGMVPDITTYRNLVETFGKLNK 298

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
                 L  EM  SG  PD  +   L++ Y      + A+ ++ +M+E +   + + Y+ 
Sbjct: 299 LEKVSELLKEMESSGNLPDISSYNVLLEAYASKGDIRHAMGVFRQMQEARCVPNAVTYSM 358

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
           LLN+    G  ++   LF +MK+S+  +PD  +Y  ++ ++G GG     + LF +M E 
Sbjct: 359 LLNLYGGHGRYDDVRELFLEMKVSN-TEPDVGTYNVLIEVFGEGGYFKEVVTLFHDMVEE 417

Query: 463 GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR 504
            V  N+     LI   GK    +D  ++     ++G+ P  +
Sbjct: 418 NVEPNMGTYEGLIYACGKGGLHEDAKKILLHMDEKGIVPSTK 459



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 121/536 (22%), Positives = 230/536 (42%), Gaps = 43/536 (8%)

Query: 123 DLKLFARKLNDCDN-----TEEAFLRAITE---IPHQPTRENALLILNSLKFWQKSYFFF 174
           D+  +   LN C N       E   R + E   +P   T  N +     L   +K     
Sbjct: 247 DIITYNTLLNACANRGLGDEAEMVFRTMNEGGMVPDITTYRNLVETFGKLNKLEKVSELL 306

Query: 175 NWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKR 234
             ++S    P +   YNV +++       +    +  +M       + +TYS ++     
Sbjct: 307 KEMESSGNLP-DISSYNVLLEAYASKGDIRHAMGVFRQMQEARCVPNAVTYSMLLNLYGG 365

Query: 235 CNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIA 294
              +D+  E F  M  +   PD  TY+ +++V+ + G  +EV++L+   V    +P+   
Sbjct: 366 HGRYDDVRELFLEMKVSNTEPDVGTYNVLIEVFGEGGYFKEVVTLFHDMVEENVEPNMGT 425

Query: 295 FSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMV 354
           +  L    G+ G ++  + +L  M   G+ P+   Y  ++EA G+A     A  +F+ M 
Sbjct: 426 YEGLIYACGKGGLHEDAKKILLHMDEKGIVPSTKAYTGVIEAYGQAASYEEALVMFNTMN 485

Query: 355 ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
           E G  P  +T  +LI ++ +    K++  +  +M E+    D   +N ++      G  E
Sbjct: 486 EMGSKPTVETYNSLINMFARGGLYKESEAIMWKMGESGVARDRDSFNGVIEGYRQGGQFE 545

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTC- 473
           EA + + +++ + + +PD  ++ A+L++Y + G VD + E F E+   G+  +VM C C 
Sbjct: 546 EAIKTYVELEKARF-QPDERTFEAVLSVYCTAGLVDESEEQFREIRASGILPSVM-CYCM 603

Query: 474 LIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN 533
           +I    ++ R DD   V    +   V    ++ G ++      +   D          +N
Sbjct: 604 MIAVYARSNRWDDAYEVLDEMVTNKVSNIHQVVGKMM------KGDYD--------DYSN 649

Query: 534 PKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELL 593
            ++V ++         F+ +  E         +  R  F N L++        ERA  +L
Sbjct: 650 WQMVEYV---------FDKLNSE------GCGLGMR--FYNTLLEALWWLGQKERAARVL 692

Query: 594 YLGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQL 649
                 GL+P L  K+   WS+DV  +  G A TA+  W+  + ++ L+ E LP +
Sbjct: 693 SEAIKRGLFPELFRKSKLVWSVDVHRMWEGGACTAISVWLNNMHEMFLKGEDLPHV 748



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 137/293 (46%), Gaps = 12/293 (4%)

Query: 295 FSVLGKMFGESGDYD-GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
           F+++ K F + GD+   +R      + +  +PN  +Y  ++  +G+ G    +  +F+EM
Sbjct: 109 FALVFKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKSTEIFEEM 168

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
              G+     + TALI  YG+    + +LEL ERM++ K     + YNT++N CA  GL 
Sbjct: 169 PTHGVPRSVFSYTALINSYGRHGQYEVSLELLERMKKEKVTPSILTYNTVINSCARGGLN 228

Query: 414 EEA-ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
            E    LF +M+  +  +PD  +Y  +LN   + G  D A  +F  M+E G+  ++    
Sbjct: 229 WEGLLSLFAEMR-HEGIQPDIITYNTLLNACANRGLGDEAEMVFRTMNEGGMVPDITTYR 287

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQA 532
            L++  GK  +++ +  +       G  PD      LL   +          V   +Q+A
Sbjct: 288 NLVETFGKLNKLEKVSELLKEMESSGNLPDISSYNVLLEAYASKGDIRHAMGVFRQMQEA 347

Query: 533 N--PKLVAF---LNLIEDNSTGFENIKEEFRNV-IKDTEVDARRPFCNCLIDI 579
              P  V +   LNL   +   +++++E F  + + +TE D      N LI++
Sbjct: 348 RCVPNAVTYSMLLNLYGGHGR-YDDVRELFLEMKVSNTEPDVGT--YNVLIEV 397


>gi|255661162|gb|ACU25750.1| pentatricopeptide repeat-containing protein [Glandularia flava]
          Length = 426

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/283 (31%), Positives = 146/283 (51%), Gaps = 7/283 (2%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D  TYST+IT   +  LFD A+ W ++M +  +  D V YS ++++  K     + +S++
Sbjct: 8   DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
            R   SG+ PD +A++ +  +FG++  +   R ++ EM++ GV PN   Y+TLL    + 
Sbjct: 68  SRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVEN 127

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
            K   A S+F EM E     D  T   +I +YG+   AK+A +L+  MR+     + + Y
Sbjct: 128 KKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSY 187

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           NTLL +  D  L  EA  LF  M+  +  + +  +Y +M+ IYG     + A  L +EM 
Sbjct: 188 NTLLRVYGDAELFGEAIHLFRLMQRKN-IEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 246

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVF------GVSIDR 497
             G+  N +  + +I   GK  ++D    +F      GV ID+
Sbjct: 247 NRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQ 289



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 82/366 (22%), Positives = 168/366 (45%), Gaps = 6/366 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K     P + + YN  +      + F+    L +EM +  +  +  +YS
Sbjct: 60  YSKAISIFSRLKRSGFTP-DLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYS 118

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY + G  +E   L+      
Sbjct: 119 TLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 178

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   ++ N+V YN+++   GK  +   A
Sbjct: 179 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKA 238

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R +   +D +LY T++  
Sbjct: 239 NNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVA 298

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K     +PDN      ++I    G  + A  +F +  + G   
Sbjct: 299 YERAGLVAHAKRLLHELK-----RPDNIPRDIAIHILAGAGRXEEATWVFRQAIDAGEVK 353

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           ++     +I    K ++  ++V VF      G  PD  +   +L+        +    V 
Sbjct: 354 DITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVY 413

Query: 527 TCLQQA 532
             +Q+ 
Sbjct: 414 MEMQEV 419



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 138/271 (50%), Gaps = 1/271 (0%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
            +M  + +  D + YS +I  +++   + +AI  F R+ ++G  PD V Y+A+++V+ K+
Sbjct: 33  QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKA 92

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
               E  SL      +G  P+  ++S L  M+ E+  +     V  EM+ +    +L   
Sbjct: 93  KLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTC 152

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
           N +++  G+ G    A  LF  M + G+ P+  +   L+++YG A    +A+ L+  M+ 
Sbjct: 153 NIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR 212

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
                + + YN+++ +       E+A  L ++M+ +   +P++ +Y+ +++I+G  G +D
Sbjct: 213 KNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ-NRGIEPNSITYSTIISIWGKVGKLD 271

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
            A  LF+++   GV I+ +    +I    +A
Sbjct: 272 RAAMLFQKLRSSGVDIDQVLYQTMIVAYERA 302



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 125/261 (47%), Gaps = 1/261 (0%)

Query: 252 GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGI 311
            L PD  TYS ++  + K G  +  LS  ++        D + +S L ++  +  DY   
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 312 RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371
             +   +K  G  P+LV YN ++   GKA     ARSL  EM  +G+TP+  + + L+ +
Sbjct: 64  ISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTM 123

Query: 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
           Y + +   +AL ++  MRE K  +D    N ++++   +G+ +EA++LF  M+     +P
Sbjct: 124 YVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG-IEP 182

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           +  SY  +L +YG       AI LF  M    +  NV+    ++   GK    +    + 
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 242

Query: 492 GVSIDRGVKPDDRLCGCLLSV 512
               +RG++P+      ++S+
Sbjct: 243 QEMQNRGIEPNSITYSTIISI 263



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/242 (21%), Positives = 105/242 (43%), Gaps = 5/242 (2%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           P+  +    L +    + + ++   F  ++ +N+     + YN  M       + +    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNI-EQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  EM +  IE ++ITYSTII+   +    D A   F+++  +G+  D+V Y  ++  Y 
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYE 300

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           ++G V       +R +    +PD I   +   +   +G  +   +V ++    G   ++ 
Sbjct: 301 RAGLVAHA----KRLLHELKRPDNIPRDIAIHILAGAGRXEEATWVFRQAIDAGEVKDIT 356

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
           V+  ++    K  K G    +FD+M   G  PD   +  ++  YGK      A +++  M
Sbjct: 357 VFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVYMEM 416

Query: 389 RE 390
           +E
Sbjct: 417 QE 418



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 87/191 (45%), Gaps = 3/191 (1%)

Query: 355 ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
           E  L+PD  T + LI  +GK      AL   ++M +++ P D +LY+ L+ +   +    
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
           +A  +F  +K S +  PD  +Y AM+N++G       A  L  EM   GV  N    + L
Sbjct: 62  KAISIFSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN- 533
           +    + ++  + + VF    +     D   C  ++ V      +++  K+   +++   
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180

Query: 534 -PKLVAFLNLI 543
            P +V++  L+
Sbjct: 181 EPNVVSYNTLL 191


>gi|90399139|emb|CAJ86163.1| H0913C04.4 [Oryza sativa Indica Group]
 gi|125550286|gb|EAY96108.1| hypothetical protein OsI_17985 [Oryza sativa Indica Group]
          Length = 900

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/371 (25%), Positives = 165/371 (44%), Gaps = 40/371 (10%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           ++ EM S  I+ +N TYS +I      + F  A   FE M ++GL PD   Y+ +++ + 
Sbjct: 460 ISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFC 519

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           K G ++  + + E+      +P   AF  + + +  +GD       L  M+  G  P ++
Sbjct: 520 KMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVM 579

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            YN L+  + +  K   A S+ D+M  +G+TP+E T T +++ Y  +     A E + ++
Sbjct: 580 TYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKI 639

Query: 389 RENKWPMDFILYNTLLNMCADIGLVE---------------------------------- 414
           +E+   +D  +Y TLL  C   G ++                                  
Sbjct: 640 KESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDV 699

Query: 415 -EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTC 473
            EAE L + MK  D   P+ ++YT+ +N     G++  A ++ EEM ++G+  NV   T 
Sbjct: 700 WEAEDLMKQMK-EDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTT 758

Query: 474 LIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGC----LLSVVSLCETSEDVGKVITCL 529
           LI+   +    D  ++ F      G+KPD+    C    LLS  ++ E S   G +  C 
Sbjct: 759 LIKGWARVSLPDRALKCFEEMKLAGLKPDEASYHCLVTSLLSRATVMEGSTYTGIISVCR 818

Query: 530 QQANPKLVAFL 540
           + +   L   L
Sbjct: 819 EMSENDLTVDL 829



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 73/303 (24%), Positives = 144/303 (47%), Gaps = 2/303 (0%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           I+ N+     + G   +  E+L  EM  + I+     Y +++         ++ +  FER
Sbjct: 370 IYSNIIHAHCQSG-NMERAEELVCEMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFER 428

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           + + G  P  ++Y  +L++Y K GKV + LS+ +   + G K +   +S+L   F    D
Sbjct: 429 LKECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHD 488

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
           +     + +EM   G+QP+  +YN L+EA  K G    A  + ++M +  + P  +    
Sbjct: 489 FANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRP 548

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           +I+ Y  A   K AL+  + MR +      + YN L++       V+ A  + + M ++ 
Sbjct: 549 IIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAG 608

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
              P+ ++YT ++  Y + G++  A E F ++ E G+ ++V     L++   K+ R+   
Sbjct: 609 -ITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSA 667

Query: 488 VRV 490
           + V
Sbjct: 668 LAV 670



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 104/465 (22%), Positives = 202/465 (43%), Gaps = 33/465 (7%)

Query: 88  SKPKSTWVNPTKPRRSVLSLQRQKRSTYSYNPRVRDLKLFARKLNDCDNTEEAFLRAITE 147
           ++ ++ WVN  +        +R+ RS + +  R    + F R +    +  +A + A   
Sbjct: 207 AEQRARWVNDGR--------RREPRSPW-HEGRDEACREFRRVVESRPDNWQAVVSAFER 257

Query: 148 IPHQPTRENALLILNSLKFWQKSYF--FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQL 205
           IP    RE  L+I+   K   K +    F  ++++ + P   +F ++ + +    R  + 
Sbjct: 258 IPKPSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSL-VHAYAVARDMRG 316

Query: 206 IEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMP-DEVTYSAIL 264
                 EM S  +EL  +TYS +I+   + N    A   F+   KT L   + + YS I+
Sbjct: 317 ALSCVEEMKSEGLELTIVTYSILISGFAKINDSQSADNLFKEA-KTKLSSLNGIIYSNII 375

Query: 265 DVYAKSGKVEE----VLSLYERGVASGWKPDPIAFSVLGKMFGES--GDYDGIRYVLQEM 318
             + +SG +E     V  + E G+ +   P  +  S+   M G +   + +    V + +
Sbjct: 376 HAHCQSGNMERAEELVCEMEEDGIDA---PIDVYHSM---MHGYTIIQNENKCLVVFERL 429

Query: 319 KSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWA 378
           K  G +P+++ Y  LL    K GK   A S+  EM   G+  + KT + LI  +      
Sbjct: 430 KECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDF 489

Query: 379 KDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTA 438
            +A  ++E M  +    D  +YN L+     +G ++ A  + E M+  +  +P N ++  
Sbjct: 490 ANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQ-KERMQPSNRAFRP 548

Query: 439 MLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRG 498
           ++  Y   G++ +A++  + M   G    VM    LI  L +  ++   V V       G
Sbjct: 549 IIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAG 608

Query: 499 VKPDDRLCGCLLSVVSLCETSEDVGKV---ITCLQQANPKLVAFL 540
           + P++     ++   +    S D+GK     T ++++  KL  ++
Sbjct: 609 ITPNEHTYTIIMRGYA---ASGDIGKAFEYFTKIKESGLKLDVYI 650



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 98/215 (45%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN  +  L    + Q    + ++M    I  +  TY+ I+          +A E+F ++ 
Sbjct: 581 YNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIK 640

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
           ++GL  D   Y  +L    KSG+++  L++           +   +++L   +   GD  
Sbjct: 641 ESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVW 700

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               ++++MK  GV PN+  Y + + A  KAG    A  + +EMV+ GL P+ KT T LI
Sbjct: 701 EAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLI 760

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
           K + +      AL+ +E M+      D   Y+ L+
Sbjct: 761 KGWARVSLPDRALKCFEEMKLAGLKPDEASYHCLV 795



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 85/378 (22%), Positives = 159/378 (42%), Gaps = 26/378 (6%)

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
           FER+ K    P    +  ++  YAK G      + +E   A G +P+   F+ L   +  
Sbjct: 255 FERIPK----PSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAV 310

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
           + D  G    ++EMKS G++  +V Y+ L+    K      A +LF E      + +   
Sbjct: 311 ARDMRGALSCVEEMKSEGLELTIVTYSILISGFAKINDSQSADNLFKEAKTKLSSLNGII 370

Query: 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
            + +I  + ++   + A EL   M E+       +Y+++++    I    +   +FE +K
Sbjct: 371 YSNIIHAHCQSGNMERAEELVCEMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLK 430

Query: 425 LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484
              + KP   SY  +LN+Y   G V  A+ + +EM   G+  N    + LI         
Sbjct: 431 ECGF-KPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDF 489

Query: 485 DDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ-----ANPKLVAF 539
            +   +F   +  G++PD  +   L+   + C+   ++ + I  L++       P   AF
Sbjct: 490 ANAFAIFEEMLRSGLQPDRAIYNLLIE--AFCKMG-NMDRAICILEKMQKERMQPSNRAF 546

Query: 540 LNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFC-------NCLIDICRNRNLNERAHEL 592
             +IE  +     +  + ++ + DT    RR  C       N LI     ++  +RA  +
Sbjct: 547 RPIIEGYA-----VAGDMKSAL-DTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSV 600

Query: 593 LYLGTLYGLYPGLHNKTL 610
           L   ++ G+ P  H  T+
Sbjct: 601 LDKMSIAGITPNEHTYTI 618



 Score = 49.7 bits (117), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 91/203 (44%), Gaps = 9/203 (4%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           K++ +F  IK   L  ++   Y   +++     + Q    +  EM   +I  +   Y+ +
Sbjct: 631 KAFEYFTKIKESGL-KLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNIL 689

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
           I    R     EA +  ++M + G+ P+  TY++ ++   K+G ++    + E  V  G 
Sbjct: 690 IDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGL 749

Query: 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA-------MGKAG 341
           KP+   ++ L K +      D      +EMK  G++P+   Y+ L+ +       M  + 
Sbjct: 750 KPNVKTYTTLIKGWARVSLPDRALKCFEEMKLAGLKPDEASYHCLVTSLLSRATVMEGST 809

Query: 342 KPGLARSLFDEMVESGLTPDEKT 364
             G+  S+  EM E+ LT D +T
Sbjct: 810 YTGII-SVCREMSENDLTVDLRT 831


>gi|297806115|ref|XP_002870941.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316778|gb|EFH47200.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 719

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 157/313 (50%), Gaps = 1/313 (0%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN  +  L    +++  +++  EM+ + +  D+ TY +++  A +     E    F  M 
Sbjct: 298 YNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDAVETENIFSDMR 357

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
              ++PD V +S+++ ++ +SG +++ L  +     +G  PD + +++L + +   G   
Sbjct: 358 SRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMIS 417

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               +  EM   G   ++V YNT+L  + K    G A  LF+EM E GL PD  TLT LI
Sbjct: 418 EAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERGLFPDSYTLTILI 477

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
             + K    ++A+EL+++M+E +  +D + YNTLL+    +G ++ A+ ++ DM +S   
Sbjct: 478 DGHCKLGNLQNAMELFKKMKEKRIKLDVVTYNTLLDGFGKVGDIDTAKEIWADM-VSKEI 536

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
            P   S++ ++N   S G++  A  +++EM    +   VM C  +I+   ++    D   
Sbjct: 537 LPTPISFSILVNALCSKGHLSEAFRVWDEMISKSIKPTVMICNSMIKGYCRSGNASDGEI 596

Query: 490 VFGVSIDRGVKPD 502
                I  G  PD
Sbjct: 597 FLEKMISEGFVPD 609



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 138/281 (49%), Gaps = 1/281 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D +TY+T+I+      L +EA E    M   G  P   TY+ +++   K GK E    ++
Sbjct: 259 DIVTYNTLISAYSSQGLMEEAFELMHAMPSKGFSPGVYTYNTVINGLCKHGKYERAKEVF 318

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
              + SG  PD   +  L     + GD      +  +M+S  V P+LV +++++    ++
Sbjct: 319 AEMLRSGLSPDSTTYRSLLMEACKKGDAVETENIFSDMRSRDVVPDLVCFSSMMSLFTRS 378

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G    A   F+ + E+GL PD    T LI+ Y +     +A+ L   M +    MD + Y
Sbjct: 379 GNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTY 438

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           NT+L+      ++ EA++LF +M       PD+Y+ T +++ +   GN+ NA+ELF++M 
Sbjct: 439 NTILHGLCKRKMLGEADKLFNEMTERGLF-PDSYTLTILIDGHCKLGNLQNAMELFKKMK 497

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
           E  + ++V+    L+   GK   ID    ++   + + + P
Sbjct: 498 EKRIKLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILP 538



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 97/395 (24%), Positives = 175/395 (44%), Gaps = 20/395 (5%)

Query: 122 RDLKLFARKLNDCDNTEEAF--LRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKS 179
           R L + A K  D   TE  F  +R+   +P      + + +        K+  +FN +K 
Sbjct: 334 RSLLMEACKKGDAVETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKE 393

Query: 180 QNLFPMETIFYNVTMKSLRFGRQFQLIE--QLANEMVSNEIELDNITYSTIITCAKRCNL 237
             L P + + Y + ++   + R+  + E   L NEM+     +D +TY+TI+    +  +
Sbjct: 394 AGLIP-DNVIYTILIQG--YCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKM 450

Query: 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
             EA + F  M + GL PD  T + ++D + K G ++  + L+++      K D + ++ 
Sbjct: 451 LGEADKLFNEMTERGLFPDSYTLTILIDGHCKLGNLQNAMELFKKMKEKRIKLDVVTYNT 510

Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
           L   FG+ GD D  + +  +M S  + P  + ++ L+ A+   G    A  ++DEM+   
Sbjct: 511 LLDGFGKVGDIDTAKEIWADMVSKEILPTPISFSILVNALCSKGHLSEAFRVWDEMISKS 570

Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL-------NMCADI 410
           + P      ++IK Y ++  A D     E+M    +  D I YNTL+       NM    
Sbjct: 571 IKPTVMICNSMIKGYCRSGNASDGEIFLEKMISEGFVPDCISYNTLIYGFVKEENMSKAF 630

Query: 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG 470
           GLV++ E     +       PD ++Y ++L+ +     +  A  +  +M E GV  +   
Sbjct: 631 GLVKKMEEKQGGL------VPDVFTYNSILHGFCRENQMKEAEAVLRKMIERGVNPDRST 684

Query: 471 CTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRL 505
            T LI        + +  R     + RG  PDD+ 
Sbjct: 685 YTSLINGFVSQDNLTEAFRFHDEMLQRGFSPDDKF 719



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 127/258 (49%), Gaps = 1/258 (0%)

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
           ++ + ++G+  +  T + +++   K GK+E+V +        G  PD + ++ L   +  
Sbjct: 213 YQEISRSGVGVNVYTLNIMVNALCKDGKMEKVGTFLSEVQEKGVYPDIVTYNTLISAYSS 272

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
            G  +    ++  M S G  P +  YNT++  + K GK   A+ +F EM+ SGL+PD  T
Sbjct: 273 QGLMEEAFELMHAMPSKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTT 332

Query: 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
             +L+    K   A +   ++  MR      D + +++++++    G +++A   F  +K
Sbjct: 333 YRSLLMEACKKGDAVETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVK 392

Query: 425 LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484
            +    PDN  YT ++  Y   G +  A+ L  EM + G A++V+    ++  L K + +
Sbjct: 393 EAGLI-PDNVIYTILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKML 451

Query: 485 DDLVRVFGVSIDRGVKPD 502
            +  ++F    +RG+ PD
Sbjct: 452 GEADKLFNEMTERGLFPD 469


>gi|255661166|gb|ACU25752.1| pentatricopeptide repeat-containing protein [Glandularia dissecta]
          Length = 426

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/283 (31%), Positives = 146/283 (51%), Gaps = 7/283 (2%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D  TYST+IT   +  LFD A+ W ++M +  +  D V YS ++++  K     + +S++
Sbjct: 8   DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
            R   SG+ PD +A++ +  +FG++  +   R ++ EM++ GV PN   Y+TLL    + 
Sbjct: 68  SRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVEN 127

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
            K   A S+F EM E     D  T   +I +YG+   AK+A +L+  MR+     + + Y
Sbjct: 128 KKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSY 187

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           NTLL +  D  L  EA  LF  M+  +  + +  +Y +M+ IYG     + A  L +EM 
Sbjct: 188 NTLLRVYGDAELFGEAIHLFRLMQRKN-IEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 246

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVF------GVSIDR 497
             G+  N +  + +I   GK  ++D    +F      GV ID+
Sbjct: 247 NRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQ 289



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 82/367 (22%), Positives = 170/367 (46%), Gaps = 6/367 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K     P + + YN  +      + F+    L +EM +  +  +  +YS
Sbjct: 60  YSKAISIFSRLKRSGFTP-DLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYS 118

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY + G  +E   L+      
Sbjct: 119 TLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 178

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   ++ N+V YN+++   GK  +   A
Sbjct: 179 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKA 238

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R +   +D +LY T++  
Sbjct: 239 NNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVA 298

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
              +GLV  A+RL  ++K     +PDN      ++I    G ++ A  +F +  + G   
Sbjct: 299 YERVGLVAHAKRLLHELK-----RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVK 353

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           ++     +I    K ++  ++V VF      G  PD  +   +L+        +    V 
Sbjct: 354 DITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSXVIALVLNAYGKLHEFDKANDVY 413

Query: 527 TCLQQAN 533
             +Q+  
Sbjct: 414 MEMQEVG 420



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 133/257 (51%), Gaps = 1/257 (0%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
            +M  + +  D + YS +I  +++   + +AI  F R+ ++G  PD V Y+A+++V+ K+
Sbjct: 33  QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKA 92

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
               E  SL      +G  P+  ++S L  M+ E+  +     V  EM+ +    +L   
Sbjct: 93  KLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTC 152

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
           N +++  G+ G    A  LF  M + G+ P+  +   L+++YG A    +A+ L+  M+ 
Sbjct: 153 NIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR 212

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
                + + YN+++ +       E+A  L ++M+ +   +P++ +Y+ +++I+G  G +D
Sbjct: 213 KNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ-NRGIEPNSITYSTIISIWGKVGKLD 271

Query: 451 NAIELFEEMSELGVAIN 467
            A  LF+++   GV I+
Sbjct: 272 RAAMLFQKLRSSGVDID 288



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 125/261 (47%), Gaps = 1/261 (0%)

Query: 252 GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGI 311
            L PD  TYS ++  + K G  +  LS  ++        D + +S L ++  +  DY   
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 312 RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371
             +   +K  G  P+LV YN ++   GKA     ARSL  EM  +G+TP+  + + L+ +
Sbjct: 64  ISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTM 123

Query: 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
           Y + +   +AL ++  MRE K  +D    N ++++   +G+ +EA++LF  M+     +P
Sbjct: 124 YVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG-IEP 182

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           +  SY  +L +YG       AI LF  M    +  NV+    ++   GK    +    + 
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 242

Query: 492 GVSIDRGVKPDDRLCGCLLSV 512
               +RG++P+      ++S+
Sbjct: 243 QEMQNRGIEPNSITYSTIISI 263



 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/242 (21%), Positives = 104/242 (42%), Gaps = 5/242 (2%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           P+  +    L +    + + ++   F  ++ +N+     + YN  M       + +    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNI-EQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  EM +  IE ++ITYSTII+   +    D A   F+++  +G+  D+V Y  ++  Y 
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYE 300

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           + G V       +R +    +PD I   +   +   +G  +   +V ++    G   ++ 
Sbjct: 301 RVGLVAHA----KRLLHELKRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDIT 356

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
           V+  ++    K  K G    +FD+M   G  PD   +  ++  YGK      A +++  M
Sbjct: 357 VFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSXVIALVLNAYGKLHEFDKANDVYMEM 416

Query: 389 RE 390
           +E
Sbjct: 417 QE 418



 Score = 62.8 bits (151), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 87/191 (45%), Gaps = 3/191 (1%)

Query: 355 ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
           E  L+PD  T + LI  +GK      AL   ++M +++ P D +LY+ L+ +   +    
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
           +A  +F  +K S +  PD  +Y AM+N++G       A  L  EM   GV  N    + L
Sbjct: 62  KAISIFSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN- 533
           +    + ++  + + VF    +     D   C  ++ V      +++  K+   +++   
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180

Query: 534 -PKLVAFLNLI 543
            P +V++  L+
Sbjct: 181 EPNVVSYNTLL 191


>gi|46091165|dbj|BAD13711.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 142/292 (48%), Gaps = 1/292 (0%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
           +EM+   I  + +TYS+II    +    D+A+E    M K G+MP+  TY++I+  Y  S
Sbjct: 223 HEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSS 282

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
           G+ +E +   ++  + G +PD + ++ L     ++G     R +   M   G++P +  Y
Sbjct: 283 GQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTY 342

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
            TLL+     G       L D MV +G+ P+    + LI  Y K      A+ ++ +MR+
Sbjct: 343 GTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQ 402

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
                D + Y T++ +    G VE+A R FE M + +   P N  Y ++++        D
Sbjct: 403 QGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQM-IDERLSPGNIVYNSLIHSLCIFDKWD 461

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            A EL  EM + G+ ++ +    +I    K  R+ +  ++F + +  GVKPD
Sbjct: 462 KAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPD 513



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 151/304 (49%), Gaps = 10/304 (3%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTM----KSLRFGRQFQLIEQLANEMVSNEIELDNIT 224
           ++   F+ ++ Q L P +T+ Y   +    KS R     +  EQ+ +E +S      NI 
Sbjct: 392 QAMLVFSKMRQQGLNP-DTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSP----GNIV 446

Query: 225 YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
           Y+++I      + +D+A E    M   G+  D + +++I+D + K G+V E   L++  V
Sbjct: 447 YNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMV 506

Query: 285 ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344
             G KPD I +S L   +  +G  D    +L  M S+G++P+ V YNTL+    K  +  
Sbjct: 507 RIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRME 566

Query: 345 LARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
            A  LF EM  SG++PD  T   +++   + R    A EL+  + E+   ++   YN +L
Sbjct: 567 DALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIIL 626

Query: 405 NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
           +      L +EA R+F+++ L+D  + +  ++  M+      G  D A +LF  +S  G+
Sbjct: 627 HGLCKNNLTDEALRMFQNLCLTDL-QLETRTFNIMIGALLKVGRNDEAKDLFAALSANGL 685

Query: 465 AINV 468
             +V
Sbjct: 686 VPDV 689



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 84/184 (45%), Gaps = 2/184 (1%)

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382
           V PNL  Y  L+ +   AG+  L  +    +++ G   D    T ++K     +   DA+
Sbjct: 87  VTPNLCTYGILMGSCCCAGRLDLGFAALGNVIKKGFIVDAIAFTPMLKGLCADKRTSDAM 146

Query: 383 EL-WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM-KLSDYCKPDNYSYTAML 440
           ++   RM +     +   YN LL    D    +EA  L + M      C PD  SYT ++
Sbjct: 147 DIVLRRMTQLGCIPNVFSYNILLKGLCDDNRSQEALELLQMMPDDGGDCPPDVVSYTTVI 206

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
           N +   G++D A   + EM + G+  NV+  + +I  L KA+ +D  + V    +  GV 
Sbjct: 207 NGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVM 266

Query: 501 PDDR 504
           P+ R
Sbjct: 267 PNCR 270



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 121/276 (43%), Gaps = 7/276 (2%)

Query: 241 AIEWFERMYKTG---LMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS- 296
           A+  + RM + G   + P+  TY  ++     +G+++   +     +  G+  D IAF+ 
Sbjct: 72  AVSRYNRMARAGADEVTPNLCTYGILMGSCCCAGRLDLGFAALGNVIKKGFIVDAIAFTP 131

Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356
           +L  +  +    D +  VL+ M  LG  PN+  YN LL+ +    +   A  L   M + 
Sbjct: 132 MLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDDNRSQEALELLQMMPDD 191

Query: 357 G--LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
           G    PD  + T +I  + K      A   +  M +     + + Y++++        ++
Sbjct: 192 GGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMD 251

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
           +A  +   M + +   P+  +Y ++++ Y S G    AI   ++M   GV  +V+    L
Sbjct: 252 KAMEVLTSM-VKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSL 310

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
           +  L K  R  +  ++F     RG+KP+    G LL
Sbjct: 311 MDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLL 346



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 102/241 (42%), Gaps = 45/241 (18%)

Query: 172 FFFNWIKSQNLF--------PMETIFYNVTMKS-LRFGRQFQLIEQLANEMVSNEIELDN 222
            F  W K++ L          ++TIF+N  + S  + GR  +  E+L + MV   ++ D 
Sbjct: 456 IFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIE-SEKLFDLMVRIGVKPDI 514

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           ITYST+I         DEA +    M   G+ PD VTY+ +++ Y K  ++E+ L L+  
Sbjct: 515 ITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFRE 574

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLE------- 335
             +SG  PD I ++++ +   ++      + +   +   G Q  L  YN +L        
Sbjct: 575 MESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNL 634

Query: 336 ----------------------------AMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
                                       A+ K G+   A+ LF  +  +GL PD +T + 
Sbjct: 635 TDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSL 694

Query: 368 L 368
           +
Sbjct: 695 M 695



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 41/189 (21%), Positives = 87/189 (46%), Gaps = 4/189 (2%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
            + +   F  ++S  + P + I YN+ ++ L   R+    ++L   +  +  +L+  TY+
Sbjct: 565 MEDALVLFREMESSGVSP-DIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYN 623

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
            I+    + NL DEA+  F+ +  T L  +  T++ ++    K G+ +E   L+    A+
Sbjct: 624 IILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSAN 683

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM---GKAGKP 343
           G  PD   +S++ +   E G  + +  +   M+  G   N  + N+++  +   G   + 
Sbjct: 684 GLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRA 743

Query: 344 GLARSLFDE 352
           G    + DE
Sbjct: 744 GTYLFMIDE 752



 Score = 40.4 bits (93), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 44/237 (18%), Positives = 98/237 (41%), Gaps = 43/237 (18%)

Query: 177 IKSQNLFPM--------ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           I+S+ LF +        + I Y+  +       +     +L   MVS  ++ D +TY+T+
Sbjct: 496 IESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTL 555

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAIL-------------DVYA------- 268
           I    + +  ++A+  F  M  +G+ PD +TY+ IL             ++Y        
Sbjct: 556 INGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGT 615

Query: 269 ---------------KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRY 313
                          K+   +E L +++    +  + +   F+++     + G  D  + 
Sbjct: 616 QLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKD 675

Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK 370
           +   + + G+ P++  Y+ + E + + G       LF  M E+G T + + L ++++
Sbjct: 676 LFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVR 732


>gi|168052517|ref|XP_001778696.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162669911|gb|EDQ56489.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 799

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/333 (26%), Positives = 162/333 (48%), Gaps = 13/333 (3%)

Query: 184 PMETIFYNVTMKSL-RFGRQFQLIEQLANEMVS-NEIELDNITYSTIITCAKRCNLFDEA 241
           P++   +N+ +  L + GR F+    L  EM   N  E D +T++ ++     C    +A
Sbjct: 226 PLDRYSHNIILNCLTKLGR-FEDAINLFKEMRKMNGCEPDVVTFNALLHVYALCGQITKA 284

Query: 242 IEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKM 301
            E F+ M   G+ P  VT++ +L  YA  G   E L +    V + ++PD +++S L   
Sbjct: 285 QETFDMMIGEGMAPTIVTFNTLLGAYASQGMYTEALQVVGLLVKAKFEPDVVSYSSLLNA 344

Query: 302 FGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD 361
           FG++G  +  + V   MK    +PNLV +N L++A   AGK   AR L  +M E+ + P+
Sbjct: 345 FGKAGYPEKAQEVFDLMKQRSRKPNLVTFNGLMDAYASAGKYERARELLHDMAEARIEPN 404

Query: 362 EKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFE 421
             T+ +L     +AR  +   +++   +  +  ++   +N  +    + G  +EA+ L E
Sbjct: 405 VVTICSLFAACARARCPEKVRDVFHEAKVRQIALNVPAFNAAITAYIEAGQFDEAKALLE 464

Query: 422 DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
            M+  +  +P+  ++  ++N  GS G+   A  L+++M +LG+ + V  C+ LI    K 
Sbjct: 465 VMEEQN-LRPNGVTFLLLINAAGSLGDYREARTLYDKMVDLGIPLTVEPCSALINAFAKH 523

Query: 482 RRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVS 514
              ++   +F          D R  GC  +VV+
Sbjct: 524 GMYNEARTIF---------DDMRKAGCKANVVT 547



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 92/398 (23%), Positives = 178/398 (44%), Gaps = 13/398 (3%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVS--NEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           YN  M       Q++   Q+ ++M+     I     +Y+ +I        + +A+E  +R
Sbjct: 125 YNALMNVHGRAGQWRWALQIFDDMLQAPKPIAPSRSSYNNLINACGSSGQWFKALEICKR 184

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M   G+ PD +TY+ IL  +   G+    ++ Y+  ++     D  + +++     + G 
Sbjct: 185 MTDNGVGPDLMTYNIILSAFKSGGQPRHAVAYYDHLISKKVPLDRYSHNIILNCLTKLGR 244

Query: 308 YDGIRYVLQEMKSL-GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
           ++    + +EM+ + G +P++V +N LL      G+   A+  FD M+  G+ P   T  
Sbjct: 245 FEDAINLFKEMRKMNGCEPDVVTFNALLHVYALCGQITKAQETFDMMIGEGMAPTIVTFN 304

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
            L+  Y       +AL++   + + K+  D + Y++LLN     G  E+A+ +F+ MK  
Sbjct: 305 TLLGAYASQGMYTEALQVVGLLVKAKFEPDVVSYSSLLNAFGKAGYPEKAQEVFDLMKQR 364

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
              KP+  ++  +++ Y S G  + A EL  +M+E  +  NV+    L     +AR  + 
Sbjct: 365 SR-KPNLVTFNGLMDAYASAGKYERARELLHDMAEARIEPNVVTICSLFAACARARCPEK 423

Query: 487 LVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAFLNLIE 544
           +  VF  +  R +  +       ++        ++   ++  +++ N  P  V FL LI 
Sbjct: 424 VRDVFHEAKVRQIALNVPAFNAAITAYIEAGQFDEAKALLEVMEEQNLRPNGVTFLLLI- 482

Query: 545 DNSTGFENIKEEFRNVIKDTEVDARRPF----CNCLID 578
            N+ G      E R  + D  VD   P     C+ LI+
Sbjct: 483 -NAAGSLGDYREAR-TLYDKMVDLGIPLTVEPCSALIN 518



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 140/296 (47%), Gaps = 4/296 (1%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           Q+   +V  + E D ++YS+++    +    ++A E F+ M +    P+ VT++ ++D Y
Sbjct: 321 QVVGLLVKAKFEPDVVSYSSLLNAFGKAGYPEKAQEVFDLMKQRSRKPNLVTFNGLMDAY 380

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
           A +GK E    L      +  +P+ +    L      +   + +R V  E K   +  N+
Sbjct: 381 ASAGKYERARELLHDMAEARIEPNVVTICSLFAACARARCPEKVRDVFHEAKVRQIALNV 440

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
             +N  + A  +AG+   A++L + M E  L P+  T   LI   G     ++A  L+++
Sbjct: 441 PAFNAAITAYIEAGQFDEAKALLEVMEEQNLRPNGVTFLLLINAAGSLGDYREARTLYDK 500

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           M +   P+     + L+N  A  G+  EA  +F+DM+ +  CK +  +YT+++  Y    
Sbjct: 501 MVDLGIPLTVEPCSALINAFAKHGMYNEARTIFDDMRKAG-CKANVVTYTSLMIAYRM-- 557

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
             D+A    EEM   G+  + +    L   L KA R + ++++   S  RG+  DD
Sbjct: 558 -YDDAQLACEEMVAAGITPDSIAFGTLFVALNKANRSEKVLQIEKSSRARGILFDD 612



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 83/381 (21%), Positives = 163/381 (42%), Gaps = 7/381 (1%)

Query: 147 EIPHQPTRENALL-ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQL 205
           ++P      N +L  L  L  ++ +   F  ++  N    + + +N  +       Q   
Sbjct: 224 KVPLDRYSHNIILNCLTKLGRFEDAINLFKEMRKMNGCEPDVVTFNALLHVYALCGQITK 283

Query: 206 IEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
            ++  + M+   +    +T++T++       ++ EA++    + K    PD V+YS++L+
Sbjct: 284 AQETFDMMIGEGMAPTIVTFNTLLGAYASQGMYTEALQVVGLLVKAKFEPDVVSYSSLLN 343

Query: 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325
            + K+G  E+   +++       KP+ + F+ L   +  +G Y+  R +L +M    ++P
Sbjct: 344 AFGKAGYPEKAQEVFDLMKQRSRKPNLVTFNGLMDAYASAGKYERARELLHDMAEARIEP 403

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
           N+V   +L  A  +A  P   R +F E     +  +     A I  Y +A    +A  L 
Sbjct: 404 NVVTICSLFAACARARCPEKVRDVFHEAKVRQIALNVPAFNAAITAYIEAGQFDEAKALL 463

Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYS-YTAMLNIYG 444
           E M E     + + +  L+N    +G   EA  L++  K+ D   P      +A++N + 
Sbjct: 464 EVMEEQNLRPNGVTFLLLINAAGSLGDYREARTLYD--KMVDLGIPLTVEPCSALINAFA 521

Query: 445 SGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR 504
             G  + A  +F++M + G   NV+  T L+      R  DD        +  G+ PD  
Sbjct: 522 KHGMYNEARTIFDDMRKAGCKANVVTYTSLMIAY---RMYDDAQLACEEMVAAGITPDSI 578

Query: 505 LCGCLLSVVSLCETSEDVGKV 525
             G L   ++    SE V ++
Sbjct: 579 AFGTLFVALNKANRSEKVLQI 599



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/318 (22%), Positives = 142/318 (44%), Gaps = 19/318 (5%)

Query: 254 MPDEVTYSAILDVY-------AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
           M ++  Y A  D+Y       A+  + ++   L+        KPD   ++ L  + G +G
Sbjct: 77  MKNQKCYRARTDIYNCMIWLHARHQRADQARGLFYEMKVWRCKPDVETYNALMNVHGRAG 136

Query: 307 DYDGIRYVLQEMKSL-----GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD 361
            +   R+ LQ    +      + P+   YN L+ A G +G+   A  +   M ++G+ PD
Sbjct: 137 QW---RWALQIFDDMLQAPKPIAPSRSSYNNLINACGSSGQWFKALEICKRMTDNGVGPD 193

Query: 362 EKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFE 421
             T   ++  +      + A+  ++ +   K P+D   +N +LN    +G  E+A  LF+
Sbjct: 194 LMTYNIILSAFKSGGQPRHAVAYYDHLISKKVPLDRYSHNIILNCLTKLGRFEDAINLFK 253

Query: 422 DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
           +M+  + C+PD  ++ A+L++Y   G +  A E F+ M   G+A  ++    L+      
Sbjct: 254 EMRKMNGCEPDVVTFNALLHVYALCGQITKAQETFDMMIGEGMAPTIVTFNTLLGAYASQ 313

Query: 482 RRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAF 539
               + ++V G+ +    +PD      LL+        E   +V   ++Q +  P LV F
Sbjct: 314 GMYTEALQVVGLLVKAKFEPDVVSYSSLLNAFGKAGYPEKAQEVFDLMKQRSRKPNLVTF 373

Query: 540 LNLIEDNSTG--FENIKE 555
             L++  ++   +E  +E
Sbjct: 374 NGLMDAYASAGKYERARE 391



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 132/284 (46%), Gaps = 10/284 (3%)

Query: 225 YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
           Y+ +I    R    D+A   F  M      PD  TY+A+++V+ ++G+    L +++  +
Sbjct: 90  YNCMIWLHARHQRADQARGLFYEMKVWRCKPDVETYNALMNVHGRAGQWRWALQIFDDML 149

Query: 285 ASGWKPDPIA-----FSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
            +   P PIA     ++ L    G SG +     + + M   GV P+L+ YN +L A   
Sbjct: 150 QA---PKPIAPSRSSYNNLINACGSSGQWFKALEICKRMTDNGVGPDLMTYNIILSAFKS 206

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE-NKWPMDFI 398
            G+P  A + +D ++   +  D  +   ++    K    +DA+ L++ MR+ N    D +
Sbjct: 207 GGQPRHAVAYYDHLISKKVPLDRYSHNIILNCLTKLGRFEDAINLFKEMRKMNGCEPDVV 266

Query: 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458
            +N LL++ A  G + +A+  F DM + +   P   ++  +L  Y S G    A+++   
Sbjct: 267 TFNALLHVYALCGQITKAQETF-DMMIGEGMAPTIVTFNTLLGAYASQGMYTEALQVVGL 325

Query: 459 MSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           + +     +V+  + L+   GKA   +    VF +   R  KP+
Sbjct: 326 LVKAKFEPDVVSYSSLLNAFGKAGYPEKAQEVFDLMKQRSRKPN 369



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 56/313 (17%), Positives = 133/313 (42%), Gaps = 3/313 (0%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           +N  + +     QF   + L   M    +  + +T+  +I  A     + EA   +++M 
Sbjct: 443 FNAAITAYIEAGQFDEAKALLEVMEEQNLRPNGVTFLLLINAAGSLGDYREARTLYDKMV 502

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
             G+       SA+++ +AK G   E  ++++    +G K + + ++ L   +     YD
Sbjct: 503 DLGIPLTVEPCSALINAFAKHGMYNEARTIFDDMRKAGCKANVVTYTSLMIAYRM---YD 559

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
             +   +EM + G+ P+ + + TL  A+ KA +      +       G+  D+   T  +
Sbjct: 560 DAQLACEEMVAAGITPDSIAFGTLFVALNKANRSEKVLQIEKSSRARGILFDDVAYTETL 619

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
               + +  + AL L+E M++ +  +   +   LL+     G ++   ++F +++     
Sbjct: 620 LACSRLKDWETALFLYEGMKKRRLRLTNTMVINLLSAVGRSGKLDRLHKVFLELQQQIGF 679

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
            P    Y  +++ Y  G      +E+   + +  +  N      ++ CL +    +  + 
Sbjct: 680 VPTLQMYNILIDSYSRGLKWRKCLEVLGCIKKDILEPNWKTYEPILSCLSQLELWETYLE 739

Query: 490 VFGVSIDRGVKPD 502
           ++G  + +G++PD
Sbjct: 740 IYGEVLAQGMEPD 752


>gi|255661180|gb|ACU25759.1| pentatricopeptide repeat-containing protein [Mulguraea aspera]
          Length = 426

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/290 (30%), Positives = 148/290 (51%), Gaps = 1/290 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D  TYST+IT   +  LFD A+ W ++M +  +  D V YS ++++  K     + +S++
Sbjct: 8   DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
            R   SG+ PD +A++ +  +FG++  +   R ++ EM++ GV PN   Y+TLL    + 
Sbjct: 68  SRLKKSGFMPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTMYVEN 127

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
            K   A S+F EM E     D  T   +I +YG+   AK+A +L+  MR+     + + Y
Sbjct: 128 KKFLEALSVFAEMREIKCFLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSY 187

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           NTLL +  D  L  EA  LF  M+  +  + +  +Y +M+ IYG     + A  L +EM 
Sbjct: 188 NTLLRVYGDAELFGEAIHLFRLMQRKN-IEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 246

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
             G+  N +  + +I   GK  ++D    +F      GV+ D  L   ++
Sbjct: 247 NRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMI 296



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 82/366 (22%), Positives = 168/366 (45%), Gaps = 6/366 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K     P + + YN  +      + F+    L +EM +  +  +  +YS
Sbjct: 60  YSKAISIFSRLKKSGFMP-DLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYS 118

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +     D  T + ++DVY + G  +E   L+      
Sbjct: 119 TLLTMYVENKKFLEALSVFAEMREIKCFLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 178

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   ++ N+V YN+++   GK  +   A
Sbjct: 179 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKA 238

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R +   +D +LY T++  
Sbjct: 239 NNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVA 298

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K     +PDN      ++I    G ++ A  +F +  + G   
Sbjct: 299 YERAGLVAHAKRLLHELK-----RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVK 353

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           ++     +I    K ++  ++V VF      G  PD  +   +L+        +    V 
Sbjct: 354 DITVFERMIYLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVY 413

Query: 527 TCLQQA 532
             +Q+ 
Sbjct: 414 MEMQEV 419



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 139/271 (51%), Gaps = 1/271 (0%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
            +M  + +  D + YS +I  +++   + +AI  F R+ K+G MPD V Y+A+++V+ K+
Sbjct: 33  QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKKSGFMPDLVAYNAMINVFGKA 92

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
               E  SL      +G  P+  ++S L  M+ E+  +     V  EM+ +    +L   
Sbjct: 93  KLFREARSLISEMRTAGVMPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCFLDLTTC 152

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
           N +++  G+ G    A  LF  M + G+ P+  +   L+++YG A    +A+ L+  M+ 
Sbjct: 153 NIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR 212

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
                + + YN+++ +       E+A  L ++M+ +   +P++ +Y+ +++I+G  G +D
Sbjct: 213 KNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ-NRGIEPNSITYSTIISIWGKVGKLD 271

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
            A  LF+++   GV I+ +    +I    +A
Sbjct: 272 RAAMLFQKLRSSGVEIDQVLYQTMIVAYERA 302



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 124/261 (47%), Gaps = 1/261 (0%)

Query: 252 GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGI 311
            L PD  TYS ++  + K G  +  LS  ++        D + +S L ++  +  DY   
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 312 RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371
             +   +K  G  P+LV YN ++   GKA     ARSL  EM  +G+ P+  + + L+ +
Sbjct: 64  ISIFSRLKKSGFMPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTM 123

Query: 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
           Y + +   +AL ++  MRE K  +D    N ++++   +G+ +EA++LF  M+     +P
Sbjct: 124 YVENKKFLEALSVFAEMREIKCFLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG-IEP 182

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           +  SY  +L +YG       AI LF  M    +  NV+    ++   GK    +    + 
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 242

Query: 492 GVSIDRGVKPDDRLCGCLLSV 512
               +RG++P+      ++S+
Sbjct: 243 QEMQNRGIEPNSITYSTIISI 263



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/242 (21%), Positives = 105/242 (43%), Gaps = 5/242 (2%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           P+  +    L +    + + ++   F  ++ +N+     + YN  M       + +    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNI-EQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  EM +  IE ++ITYSTII+   +    D A   F+++  +G+  D+V Y  ++  Y 
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYE 300

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           ++G V       +R +    +PD I   +   +   +G  +   +V ++    G   ++ 
Sbjct: 301 RAGLVAHA----KRLLHELKRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDIT 356

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
           V+  ++    K  K G    +FD+M   G  PD   +  ++  YGK      A +++  M
Sbjct: 357 VFERMIYLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVYMEM 416

Query: 389 RE 390
           +E
Sbjct: 417 QE 418



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 87/191 (45%), Gaps = 3/191 (1%)

Query: 355 ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
           +  L+PD  T + LI  +GK      AL   ++M +++ P D +LY+ L+ +   +    
Sbjct: 2   DRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
           +A  +F  +K S +  PD  +Y AM+N++G       A  L  EM   GV  N    + L
Sbjct: 62  KAISIFSRLKKSGFM-PDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTL 120

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN- 533
           +    + ++  + + VF    +     D   C  ++ V      +++  K+   +++   
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCFLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180

Query: 534 -PKLVAFLNLI 543
            P +V++  L+
Sbjct: 181 EPNVVSYNTLL 191


>gi|255661144|gb|ACU25741.1| pentatricopeptide repeat-containing protein [Verbena hastata]
          Length = 426

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/283 (31%), Positives = 146/283 (51%), Gaps = 7/283 (2%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D  TYST+IT   +  LFD A+ W ++M +  +  D V YS ++++  K     + +S++
Sbjct: 8   DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
            R   SG+ PD +A++ +  +FG++  +   R ++ EM++ GV PN   Y+TLL    + 
Sbjct: 68  SRLKRSGFMPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVEN 127

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
            K   A S+F EM E     D  T   +I +YG+   AK+A +L+  MR+     + + Y
Sbjct: 128 KKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSY 187

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           NTLL +  D  L  EA  LF  M+  +  + +  +Y +M+ IYG     + A  L +EM 
Sbjct: 188 NTLLRVYGDAELFGEAIHLFRLMQRKN-IEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 246

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVF------GVSIDR 497
             G+  N +  + +I   GK  ++D    +F      GV ID+
Sbjct: 247 NRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQ 289



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 82/366 (22%), Positives = 169/366 (46%), Gaps = 6/366 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K     P + + YN  +      + F+    L +EM +  +  +  +YS
Sbjct: 60  YSKAISIFSRLKRSGFMP-DLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYS 118

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY + G  +E   L+      
Sbjct: 119 TLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 178

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   ++ N+V YN+++   GK  +   A
Sbjct: 179 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKA 238

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R +   +D +LY T++  
Sbjct: 239 NNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVA 298

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K     +PDN      ++I    G ++ A  +F +  + G   
Sbjct: 299 YERAGLVAHAKRLLHELK-----RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVK 353

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           ++     +I    K ++  ++V VF      G  PD  +   +L+        +    V 
Sbjct: 354 DITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALILNAYGKLHEFDKANDVY 413

Query: 527 TCLQQA 532
             +Q+ 
Sbjct: 414 MEMQEV 419



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 139/271 (51%), Gaps = 1/271 (0%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
            +M  + +  D + YS +I  +++   + +AI  F R+ ++G MPD V Y+A+++V+ K+
Sbjct: 33  QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFMPDLVAYNAMINVFGKA 92

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
               E  SL      +G  P+  ++S L  M+ E+  +     V  EM+ +    +L   
Sbjct: 93  KLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTC 152

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
           N +++  G+ G    A  LF  M + G+ P+  +   L+++YG A    +A+ L+  M+ 
Sbjct: 153 NIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR 212

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
                + + YN+++ +       E+A  L ++M+ +   +P++ +Y+ +++I+G  G +D
Sbjct: 213 KNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ-NRGIEPNSITYSTIISIWGKVGKLD 271

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
            A  LF+++   GV I+ +    +I    +A
Sbjct: 272 RAAMLFQKLRSSGVDIDQVLYQTMIVAYERA 302



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 125/261 (47%), Gaps = 1/261 (0%)

Query: 252 GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGI 311
            L PD  TYS ++  + K G  +  LS  ++        D + +S L ++  +  DY   
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 312 RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371
             +   +K  G  P+LV YN ++   GKA     ARSL  EM  +G+TP+  + + L+ +
Sbjct: 64  ISIFSRLKRSGFMPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTM 123

Query: 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
           Y + +   +AL ++  MRE K  +D    N ++++   +G+ +EA++LF  M+     +P
Sbjct: 124 YVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG-IEP 182

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           +  SY  +L +YG       AI LF  M    +  NV+    ++   GK    +    + 
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 242

Query: 492 GVSIDRGVKPDDRLCGCLLSV 512
               +RG++P+      ++S+
Sbjct: 243 QEMQNRGIEPNSITYSTIISI 263



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/242 (21%), Positives = 105/242 (43%), Gaps = 5/242 (2%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           P+  +    L +    + + ++   F  ++ +N+     + YN  M       + +    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNI-EQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  EM +  IE ++ITYSTII+   +    D A   F+++  +G+  D+V Y  ++  Y 
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYE 300

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           ++G V       +R +    +PD I   +   +   +G  +   +V ++    G   ++ 
Sbjct: 301 RAGLVAHA----KRLLHELKRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDIT 356

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
           V+  ++    K  K G    +FD+M   G  PD   +  ++  YGK      A +++  M
Sbjct: 357 VFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALILNAYGKLHEFDKANDVYMEM 416

Query: 389 RE 390
           +E
Sbjct: 417 QE 418



 Score = 62.8 bits (151), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 87/191 (45%), Gaps = 3/191 (1%)

Query: 355 ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
           E  L+PD  T + LI  +GK      AL   ++M +++ P D +LY+ L+ +   +    
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
           +A  +F  +K S +  PD  +Y AM+N++G       A  L  EM   GV  N    + L
Sbjct: 62  KAISIFSRLKRSGFM-PDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN- 533
           +    + ++  + + VF    +     D   C  ++ V      +++  K+   +++   
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180

Query: 534 -PKLVAFLNLI 543
            P +V++  L+
Sbjct: 181 EPNVVSYNTLL 191


>gi|242058841|ref|XP_002458566.1| hypothetical protein SORBIDRAFT_03g035845 [Sorghum bicolor]
 gi|241930541|gb|EES03686.1| hypothetical protein SORBIDRAFT_03g035845 [Sorghum bicolor]
          Length = 796

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 142/298 (47%), Gaps = 1/298 (0%)

Query: 191 NVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYK 250
           N  +  L  G   +   ++   MV++ +ELD ITY+ +I    + +  DEAI+  + M K
Sbjct: 461 NALIHGLCQGNNMKEATKVLKAMVNSGVELDRITYNIMIQGCCKASKMDEAIQLRDDMIK 520

Query: 251 TGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDG 310
            G  PD  T++  L  Y   GKVEE+L L ++  + G KPD + +  +   + ++ D   
Sbjct: 521 RGFKPDLFTFNIFLHTYCNLGKVEEILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDMHK 580

Query: 311 IRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK 370
               L E+   G++PN V+YN L+   G+ G    A  + D M  +G+ P   T  +L+ 
Sbjct: 581 ANEYLTELMKNGLRPNAVIYNALIGGYGRNGNISDAIGILDTMKYNGIQPTPVTYNSLMY 640

Query: 371 IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCK 430
               A   ++   ++ +       +  I Y  ++     IG ++EA   F++M  S    
Sbjct: 641 WMCHAGLVEEVKAVFAQCIVKDIELGVIGYTIIIQGFCKIGKIDEAVMYFKEMH-SRGIP 699

Query: 431 PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLV 488
           P+  +YT ++  Y   GN + A +LF+EM  LG+  + +    LI    +   +D +V
Sbjct: 700 PNKMTYTTLMFAYSKSGNKEEASKLFDEMVSLGIVPDSVSYNTLISGFCEVDSLDKMV 757



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/283 (26%), Positives = 138/283 (48%), Gaps = 3/283 (1%)

Query: 236 NLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAF 295
           N   EA +  + M  +G+  D +TY+ ++    K+ K++E + L +  +  G+KPD   F
Sbjct: 471 NNMKEATKVLKAMVNSGVELDRITYNIMIQGCCKASKMDEAIQLRDDMIKRGFKPDLFTF 530

Query: 296 SVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVE 355
           ++    +   G  + I ++L +MKS G++P++V Y T+++   KA     A     E+++
Sbjct: 531 NIFLHTYCNLGKVEEILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDMHKANEYLTELMK 590

Query: 356 SGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEE 415
           +GL P+     ALI  YG+     DA+ + + M+ N      + YN+L+      GLVEE
Sbjct: 591 NGLRPNAVIYNALIGGYGRNGNISDAIGILDTMKYNGIQPTPVTYNSLMYWMCHAGLVEE 650

Query: 416 AERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLI 475
            + +F    + D  +     YT ++  +   G +D A+  F+EM   G+  N M  T L+
Sbjct: 651 VKAVFAQCIVKDI-ELGVIGYTIIIQGFCKIGKIDEAVMYFKEMHSRGIPPNKMTYTTLM 709

Query: 476 QCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCET 518
               K+   ++  ++F   +  G+ PD      L+S    CE 
Sbjct: 710 FAYSKSGNKEEASKLFDEMVSLGIVPDSVSYNTLIS--GFCEV 750



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 84/324 (25%), Positives = 147/324 (45%), Gaps = 23/324 (7%)

Query: 191 NVTMKSLRFGRQFQLIEQLANEMVSNE-IELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           ++ +++L  G Q  +  ++  EM   + +  D  TY+ +I    R    D A      + 
Sbjct: 179 SILVEALGCGGQLDVARKVFGEMRDGKTVAPDVHTYTAMIKALCRAGEIDAAFAMLAELR 238

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL------GKMFG 303
           ++G+ P  VTY+ ++D   KSG+VEE   L  R V    +P  + F +L      G+ FG
Sbjct: 239 RSGIQPTVVTYNVLMDALCKSGRVEEAFRLKGRMVEGRVRPSIVTFGILISGLARGQQFG 298

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
           E G       VLQEM+  G+ PN V+YN ++    + G    A  LFDEMV  G+    K
Sbjct: 299 EVG------AVLQEMQGFGITPNEVIYNEMIGWHCRKGHCSEALKLFDEMVSKGI----K 348

Query: 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCA-----DIGLVEEAER 418
                  +  KA   +  +E  E++ +       +++ +L N          G ++   R
Sbjct: 349 QTVVTYNLIAKALCKEGEMEHAEKILDEMLLAGMMVHCSLFNSVVAWHLRGTGRLDLVLR 408

Query: 419 LFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL 478
           L  +M L+ + KP++   TA +      G  + A E++ ++   G+ +NV     LI  L
Sbjct: 409 LIREM-LARFLKPNDALMTACIQELCKSGKHEEAAEIWFQVLGKGLGVNVATSNALIHGL 467

Query: 479 GKARRIDDLVRVFGVSIDRGVKPD 502
            +   + +  +V    ++ GV+ D
Sbjct: 468 CQGNNMKEATKVLKAMVNSGVELD 491



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 133/278 (47%), Gaps = 5/278 (1%)

Query: 185 METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNL--FDEAI 242
           ++ I YN+ ++      +     QL ++M+    + D  T++  +     CNL   +E +
Sbjct: 490 LDRITYNIMIQGCCKASKMDEAIQLRDDMIKRGFKPDLFTFNIFLH--TYCNLGKVEEIL 547

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
              ++M   GL PD VTY  I+D Y K+  + +        + +G +P+ + ++ L   +
Sbjct: 548 HLLDQMKSEGLKPDIVTYGTIIDGYCKAKDMHKANEYLTELMKNGLRPNAVIYNALIGGY 607

Query: 303 GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
           G +G+      +L  MK  G+QP  V YN+L+  M  AG     +++F + +   +    
Sbjct: 608 GRNGNISDAIGILDTMKYNGIQPTPVTYNSLMYWMCHAGLVEEVKAVFAQCIVKDIELGV 667

Query: 363 KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED 422
              T +I+ + K     +A+  ++ M     P + + Y TL+   +  G  EEA +LF++
Sbjct: 668 IGYTIIIQGFCKIGKIDEAVMYFKEMHSRGIPPNKMTYTTLMFAYSKSGNKEEASKLFDE 727

Query: 423 MKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           M +S    PD+ SY  +++ +    ++D  +E   EMS
Sbjct: 728 M-VSLGIVPDSVSYNTLISGFCEVDSLDKMVESPAEMS 764



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 73/352 (20%), Positives = 151/352 (42%), Gaps = 37/352 (10%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
            + YNV M +L    + +   +L   MV   +    +T+  +I+   R   F E     +
Sbjct: 246 VVTYNVLMDALCKSGRVEEAFRLKGRMVEGRVRPSIVTFGILISGLARGQQFGEVGAVLQ 305

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
            M   G+ P+EV Y+ ++  + + G   E L L++  V+ G K   + ++++ K   + G
Sbjct: 306 EMQGFGITPNEVIYNEMIGWHCRKGHCSEALKLFDEMVSKGIKQTVVTYNLIAKALCKEG 365

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLE-AMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           + +    +L EM   G+  +  ++N+++   +   G+  L   L  EM+   L P++  +
Sbjct: 366 EMEHAEKILDEMLLAGMMVHCSLFNSVVAWHLRGTGRLDLVLRLIREMLARFLKPNDALM 425

Query: 366 TALIKIYGKARWAKDALELW-----------------------------------ERMRE 390
           TA I+   K+   ++A E+W                                   + M  
Sbjct: 426 TACIQELCKSGKHEEAAEIWFQVLGKGLGVNVATSNALIHGLCQGNNMKEATKVLKAMVN 485

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
           +   +D I YN ++  C     ++EA +L +DM    + KPD +++   L+ Y + G V+
Sbjct: 486 SGVELDRITYNIMIQGCCKASKMDEAIQLRDDMIKRGF-KPDLFTFNIFLHTYCNLGKVE 544

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
             + L ++M   G+  +++    +I    KA+ +          +  G++P+
Sbjct: 545 EILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDMHKANEYLTELMKNGLRPN 596



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 143/317 (45%), Gaps = 3/317 (0%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE-WF 245
           ++F +V    LR   +  L+ +L  EM++  ++ ++   +  I    +    +EA E WF
Sbjct: 387 SLFNSVVAWHLRGTGRLDLVLRLIREMLARFLKPNDALMTACIQELCKSGKHEEAAEIWF 446

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           + + K GL  +  T +A++    +   ++E   + +  V SG + D I ++++ +   ++
Sbjct: 447 QVLGK-GLGVNVATSNALIHGLCQGNNMKEATKVLKAMVNSGVELDRITYNIMIQGCCKA 505

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
              D    +  +M   G +P+L  +N  L      GK      L D+M   GL PD  T 
Sbjct: 506 SKMDEAIQLRDDMIKRGFKPDLFTFNIFLHTYCNLGKVEEILHLLDQMKSEGLKPDIVTY 565

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
             +I  Y KA+    A E    + +N    + ++YN L+      G + +A  + + MK 
Sbjct: 566 GTIIDGYCKAKDMHKANEYLTELMKNGLRPNAVIYNALIGGYGRNGNISDAIGILDTMKY 625

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
           +   +P   +Y +++      G V+    +F +     + + V+G T +IQ   K  +ID
Sbjct: 626 NGI-QPTPVTYNSLMYWMCHAGLVEEVKAVFAQCIVKDIELGVIGYTIIIQGFCKIGKID 684

Query: 486 DLVRVFGVSIDRGVKPD 502
           + V  F     RG+ P+
Sbjct: 685 EAVMYFKEMHSRGIPPN 701



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 103/233 (44%), Gaps = 1/233 (0%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
             + +KS+ L P + + Y   +      +      +   E++ N +  + + Y+ +I   
Sbjct: 549 LLDQMKSEGLKP-DIVTYGTIIDGYCKAKDMHKANEYLTELMKNGLRPNAVIYNALIGGY 607

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            R     +AI   + M   G+ P  VTY++++     +G VEEV +++ + +    +   
Sbjct: 608 GRNGNISDAIGILDTMKYNGIQPTPVTYNSLMYWMCHAGLVEEVKAVFAQCIVKDIELGV 667

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           I ++++ + F + G  D      +EM S G+ PN + Y TL+ A  K+G    A  LFDE
Sbjct: 668 IGYTIIIQGFCKIGKIDEAVMYFKEMHSRGIPPNKMTYTTLMFAYSKSGNKEEASKLFDE 727

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405
           MV  G+ PD  +   LI  + +       +E    M       D   YN  ++
Sbjct: 728 MVSLGIVPDSVSYNTLISGFCEVDSLDKMVESPAEMSSQVLKQDGCSYNAFVD 780



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 76/150 (50%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           + YN  M  +      + ++ +  + +  +IEL  I Y+ II    +    DEA+ +F+ 
Sbjct: 633 VTYNSLMYWMCHAGLVEEVKAVFAQCIVKDIELGVIGYTIIIQGFCKIGKIDEAVMYFKE 692

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M+  G+ P+++TY+ ++  Y+KSG  EE   L++  V+ G  PD ++++ L   F E   
Sbjct: 693 MHSRGIPPNKMTYTTLMFAYSKSGNKEEASKLFDEMVSLGIVPDSVSYNTLISGFCEVDS 752

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
            D +     EM S  ++ +   YN  ++ +
Sbjct: 753 LDKMVESPAEMSSQVLKQDGCSYNAFVDGI 782



 Score = 53.1 bits (126), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 61/120 (50%)

Query: 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG 470
           G ++ A ++F +M+      PD ++YTAM+      G +D A  +  E+   G+   V+ 
Sbjct: 189 GQLDVARKVFGEMRDGKTVAPDVHTYTAMIKALCRAGEIDAAFAMLAELRRSGIQPTVVT 248

Query: 471 CTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQ 530
              L+  L K+ R+++  R+ G  ++  V+P     G L+S ++  +   +VG V+  +Q
Sbjct: 249 YNVLMDALCKSGRVEEAFRLKGRMVEGRVRPSIVTFGILISGLARGQQFGEVGAVLQEMQ 308


>gi|262316881|emb|CAZ44330.1| homologue to restoring pentatricopeptide repeat protein [Raphanus
           sativus]
          Length = 686

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 102/414 (24%), Positives = 176/414 (42%), Gaps = 56/414 (13%)

Query: 141 FLRAITEIPHQPTRENALLILNSL--KFWQK-----SYFFFNWIKSQNLFPMETIFYNVT 193
            LR + E+ H       ++I N++    W+      ++  F  ++ + +FP + + YN  
Sbjct: 239 LLRKMEEVSHIIPN---VVIYNTIIDGLWKDGRHSDAHNLFIEMQEKEIFP-DIVTYNCM 294

Query: 194 MKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGL 253
           +       ++   EQL  EM+  +I  D +T+S +I    +   F EA E ++ M    +
Sbjct: 295 INGFCISGRWSDAEQLLQEMLERKINPDVVTFSALINAFVKEGKFFEAEELYDEMLPRSI 354

Query: 254 MPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRY 313
           +P  VTYS+++D + K  +++    ++      G  PD I F+ L   +  +   D    
Sbjct: 355 IPSTVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCRAKRVDDGIK 414

Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYG 373
           +L EM   G+  N + Y TL+    + G    A+ L  EM+ SG+ P+  T   L+    
Sbjct: 415 LLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVTCNTLLDGLC 474

Query: 374 KARWAKDALELWERMRENKWPM-----------DFILYNTLLNMCADIGLVEEAERLFED 422
                KDALE+++ M+++K  +           D   YN L+    + G   EAE L+E+
Sbjct: 475 DNGKLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILICGLINEGKFLEAEELYEE 534

Query: 423 M--------------KLSDYCK--------------------PDNYSYTAMLNIYGSGGN 448
           M               +   CK                    PD  ++  ++  Y   G 
Sbjct: 535 MPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLITGYCKAGM 594

Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           VD+ +ELF EM + G+  + +    LI    K   ID  + +F   I  GV PD
Sbjct: 595 VDDGLELFCEMGQRGIVADAITYITLIYGFRKVDNIDGALDIFQEMISSGVYPD 648



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 154/334 (46%), Gaps = 43/334 (12%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           +T++T++      +   EA++ F +M K    P+ VT++ +++   + G+V E ++L +R
Sbjct: 152 VTFNTLLHGLCVEDRISEALDLFHQMCK----PNVVTFTTLMNGLCREGRVVEAVALLDR 207

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG-VQPNLVVYNTLLEAMGKAG 341
            +  G +P+ I +  +     + GD      +L++M+ +  + PN+V+YNT+++ + K G
Sbjct: 208 MLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIIPNVVIYNTIIDGLWKDG 267

Query: 342 KPGLARSLFDEMVESGLTPDEKTLTALIKIYG-KARWAKDALELWERMRENKWPMDFILY 400
           +   A +LF EM E  + PD  T   +I  +    RW+ DA +L + M E K   D + +
Sbjct: 268 RHSDAHNLFIEMQEKEIFPDIVTYNCMINGFCISGRWS-DAEQLLQEMLERKINPDVVTF 326

Query: 401 NTLLNMCADIGLVEEAERLFEDM--------------KLSDYCK---------------- 430
           + L+N     G   EAE L+++M               +  +CK                
Sbjct: 327 SALINAFVKEGKFFEAEELYDEMLPRSIIPSTVTYSSMIDGFCKQNRLDAAEHMFYLTPT 386

Query: 431 ----PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
               PD  ++  ++  Y     VD+ I+L  EM+E G+  N +  T LI    +   ++ 
Sbjct: 387 KGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNA 446

Query: 487 LVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSE 520
              +    I  GV P+   C  LL    LC+  +
Sbjct: 447 AQDLLQEMISSGVCPNVVTCNTLLD--GLCDNGK 478



 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 86/176 (48%), Gaps = 4/176 (2%)

Query: 216 NEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEE 275
           N +E D  TY+ +I        F EA E +E M   G++PD +TYS+++D   K  +++E
Sbjct: 503 NGVEPDVQTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDE 562

Query: 276 VLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLE 335
              +++   +  + PD + F+ L   + ++G  D    +  EM   G+  + + Y TL+ 
Sbjct: 563 ATQMFDSMGSKSFSPDVVTFNTLITGYCKAGMVDDGLELFCEMGQRGIVADAITYITLIY 622

Query: 336 AMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN 391
              K      A  +F EM+ SG+ PD  T+  ++       W+K+ LE    M E+
Sbjct: 623 GFRKVDNIDGALDIFQEMISSGVYPDTITIRNML----TGLWSKEELERAVAMLED 674



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 102/234 (43%), Gaps = 17/234 (7%)

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKT-----------GLMP 255
           + L  EM+S+ +  + +T +T++          +A+E F+ M K+           G+ P
Sbjct: 448 QDLLQEMISSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASRPFNGVEP 507

Query: 256 DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVL 315
           D  TY+ ++      GK  E   LYE     G  PD I +S +     +    D    + 
Sbjct: 508 DVQTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMF 567

Query: 316 QEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA 375
             M S    P++V +NTL+    KAG       LF EM + G+  D  T   LI  + K 
Sbjct: 568 DSMGSKSFSPDVVTFNTLITGYCKAGMVDDGLELFCEMGQRGIVADAITYITLIYGFRKV 627

Query: 376 RWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAER---LFEDMKLS 426
                AL++++ M  +    D I   T+ NM   +   EE ER   + ED+++S
Sbjct: 628 DNIDGALDIFQEMISSGVYPDTI---TIRNMLTGLWSKEELERAVAMLEDLQMS 678



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 80/177 (45%)

Query: 161 LNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIEL 220
           L   K  QKS    +  +  N    +   YN+ +  L    +F   E+L  EM    I  
Sbjct: 483 LEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILICGLINEGKFLEAEELYEEMPHRGIVP 542

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D ITYS++I    + +  DEA + F+ M      PD VT++ ++  Y K+G V++ L L+
Sbjct: 543 DTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLITGYCKAGMVDDGLELF 602

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
                 G   D I +  L   F +  + DG   + QEM S GV P+ +    +L  +
Sbjct: 603 CEMGQRGIVADAITYITLIYGFRKVDNIDGALDIFQEMISSGVYPDTITIRNMLTGL 659


>gi|410110077|gb|AFV61118.1| pentatricopeptide repeat-containing protein 123, partial
           [Coelocarpum swinglei]
          Length = 440

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/295 (30%), Positives = 150/295 (50%), Gaps = 7/295 (2%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L +EM    +  D  TYST+IT   +  LFD A+ W ++M +  +  D V YS ++++  
Sbjct: 2   LFDEMREKALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSR 61

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           K     + +S++ R   SG+ PD +A++ +  +FG++  +   R ++ EM++ GV PN  
Sbjct: 62  KLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFRDARSLISEMRTAGVMPNAS 121

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            Y+ LL    +  K   A S+F EM E     D  T   +I +YG+   AK+A +L+  M
Sbjct: 122 SYSALLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM 181

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
           R+     + + YNTLL +  D  L  EA  LF  M+  +  + +  +Y +M+ IYG    
Sbjct: 182 RKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKN-IEQNVVTYNSMMMIYGKTLE 240

Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF------GVSIDR 497
            + A  L +EM   G+  N +  + +I   GK  ++D    +F      GV ID+
Sbjct: 241 HEKANNLIQEMQNRGIEPNSITYSTIISIWGKIGKLDRAAMLFQKLRTSGVEIDQ 295



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/364 (22%), Positives = 168/364 (46%), Gaps = 6/364 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K     P + + YN  +      + F+    L +EM +  +  +  +YS
Sbjct: 66  YSKAISIFSRLKRSGFTP-DLVAYNAMINVFGKAKLFRDARSLISEMRTAGVMPNASSYS 124

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
            ++T       F EA+  F  M +   + D  T + ++DVY + G  +E   L+      
Sbjct: 125 ALLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 184

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   ++ N+V YN+++   GK  +   A
Sbjct: 185 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKA 244

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R +   +D IL+ T++  
Sbjct: 245 NNLIQEMQNRGIEPNSITYSTIISIWGKIGKLDRAAMLFQKLRTSGVEIDQILFQTMIXA 304

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K     +PDN      ++I    G ++ A  +F +  + G   
Sbjct: 305 YERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVK 359

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           ++     +I    K ++  ++V VF      G  PD  +   +L+        +   +V 
Sbjct: 360 DITVFERMIHLFSKYKKYANVVEVFDKMYGLGYFPDSNVIALVLNAYGKLHEFDKANEVY 419

Query: 527 TCLQ 530
             +Q
Sbjct: 420 MEMQ 423



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 129/268 (48%), Gaps = 1/268 (0%)

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
           F+ M +  L PD  TYS ++  + K G  +  LS  ++        D + +S L ++  +
Sbjct: 3   FDEMREKALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRK 62

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
             DY     +   +K  G  P+LV YN ++   GKA     ARSL  EM  +G+ P+  +
Sbjct: 63  LCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFRDARSLISEMRTAGVMPNASS 122

Query: 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
            +AL+ +Y + +   +AL ++  MRE K  +D    N ++++   +G+ +EA++LF  M+
Sbjct: 123 YSALLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR 182

Query: 425 LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484
                +P+  SY  +L +YG       AI LF  M    +  NV+    ++   GK    
Sbjct: 183 KMG-IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEH 241

Query: 485 DDLVRVFGVSIDRGVKPDDRLCGCLLSV 512
           +    +     +RG++P+      ++S+
Sbjct: 242 EKANNLIQEMQNRGIEPNSITYSTIISI 269



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 128/278 (46%), Gaps = 38/278 (13%)

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
           LD  T + +I    +  +  EA + F  M K G+ P+ V+Y+ +L VY  +    E + L
Sbjct: 153 LDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHL 212

Query: 280 YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
           +        + + + ++ +  ++G++ +++    ++QEM++ G++PN + Y+T++   GK
Sbjct: 213 FRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGK 272

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
            GK   A  LF ++  SG+  D+     +I  Y +A     A  L   + E K P D I 
Sbjct: 273 IGKLDRAAMLFQKLRTSGVEIDQILFQTMIXAYERAGLVAHAKRL---LHELKRP-DNIP 328

Query: 400 YNTLLNMCADIGLVEEAERLF---------EDMKL--------SDYCK------------ 430
            +T +++ A  G +EEA  +F         +D+ +        S Y K            
Sbjct: 329 RDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLFSKYKKYANVVEVFDKMY 388

Query: 431 -----PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
                PD+     +LN YG     D A E++ EM ++G
Sbjct: 389 GLGYFPDSNVIALVLNAYGKLHEFDKANEVYMEMQDVG 426



 Score = 72.8 bits (177), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 93/198 (46%), Gaps = 3/198 (1%)

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
            LFDEM E  L+PD  T + LI  +GK      AL   ++M +++ P D +LY+ L+ + 
Sbjct: 1   GLFDEMREKALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELS 60

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
             +    +A  +F  +K S +  PD  +Y AM+N++G      +A  L  EM   GV  N
Sbjct: 61  RKLCDYSKAISIFSRLKRSGFT-PDLVAYNAMINVFGKAKLFRDARSLISEMRTAGVMPN 119

Query: 468 VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVIT 527
               + L+    + ++  + + VF    +     D   C  ++ V      +++  K+  
Sbjct: 120 ASSYSALLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFW 179

Query: 528 CLQQAN--PKLVAFLNLI 543
            +++    P +V++  L+
Sbjct: 180 GMRKMGIEPNVVSYNTLL 197



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 50/242 (20%), Positives = 103/242 (42%), Gaps = 5/242 (2%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           P+  +    L +    + + ++   F  ++ +N+     + YN  M       + +    
Sbjct: 188 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNI-EQNVVTYNSMMMIYGKTLEHEKANN 246

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  EM +  IE ++ITYSTII+   +    D A   F+++  +G+  D++ +  ++  Y 
Sbjct: 247 LIQEMQNRGIEPNSITYSTIISIWGKIGKLDRAAMLFQKLRTSGVEIDQILFQTMIXAYE 306

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           ++G V       +R +    +PD I       +   +G  +   YV ++    G   ++ 
Sbjct: 307 RAGLVAHA----KRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDIT 362

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
           V+  ++    K  K      +FD+M   G  PD   +  ++  YGK      A E++  M
Sbjct: 363 VFERMIHLFSKYKKYANVVEVFDKMYGLGYFPDSNVIALVLNAYGKLHEFDKANEVYMEM 422

Query: 389 RE 390
           ++
Sbjct: 423 QD 424


>gi|255661156|gb|ACU25747.1| pentatricopeptide repeat-containing protein [Verbena rigida]
          Length = 426

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/283 (31%), Positives = 145/283 (51%), Gaps = 7/283 (2%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D  TYST+IT   +  LFD A+ W ++M +  +  D V YS ++++  K     + +S++
Sbjct: 8   DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
            R   SG+ PD +A++ +  +FG++  +   R ++ EM++ GV PN   Y+TLL    + 
Sbjct: 68  SRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVEN 127

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
            K   A S+F EM E     D  T   +I +YG+   AK+A +L+  MR+     + + Y
Sbjct: 128 KKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSY 187

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           NTLL +  D  L  EA  LF  M+  +  + +  +Y  M+ IYG     + A  L +EM 
Sbjct: 188 NTLLRVYGDAELFGEAIHLFRLMQRKN-IEQNVVTYNXMMMIYGKTLEHEKANNLIQEMQ 246

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVF------GVSIDR 497
             G+  N +  + +I   GK  ++D    +F      GV ID+
Sbjct: 247 NRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQ 289



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 82/366 (22%), Positives = 168/366 (45%), Gaps = 6/366 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K     P + + YN  +      + F+    L +EM +  +  +  +YS
Sbjct: 60  YSKAISIFSRLKRSGFTP-DLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYS 118

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY + G  +E   L+      
Sbjct: 119 TLLTMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 178

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   ++ N+V YN ++   GK  +   A
Sbjct: 179 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNXMMMIYGKTLEHEKA 238

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R +   +D +LY T++  
Sbjct: 239 NNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVA 298

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K     +PDN      ++I    G ++ A  +F +  + G   
Sbjct: 299 YERAGLVAHAKRLLHELK-----RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVK 353

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           ++     +I    K ++  ++V VF      G  PD  +   +L+        +    V 
Sbjct: 354 DITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVY 413

Query: 527 TCLQQA 532
             +Q+ 
Sbjct: 414 MEMQEV 419



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 65/271 (23%), Positives = 137/271 (50%), Gaps = 1/271 (0%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
            +M  + +  D + YS +I  +++   + +AI  F R+ ++G  PD V Y+A+++V+ K+
Sbjct: 33  QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKA 92

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
               E  SL      +G  P+  ++S L  M+ E+  +     +  EM+ +    +L   
Sbjct: 93  KLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSIFAEMREIKCLLDLTTC 152

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
           N +++  G+ G    A  LF  M + G+ P+  +   L+++YG A    +A+ L+  M+ 
Sbjct: 153 NIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR 212

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
                + + YN ++ +       E+A  L ++M+ +   +P++ +Y+ +++I+G  G +D
Sbjct: 213 KNIEQNVVTYNXMMMIYGKTLEHEKANNLIQEMQ-NRGIEPNSITYSTIISIWGKVGKLD 271

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
            A  LF+++   GV I+ +    +I    +A
Sbjct: 272 RAAMLFQKLRSSGVDIDQVLYQTMIVAYERA 302



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 125/261 (47%), Gaps = 1/261 (0%)

Query: 252 GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGI 311
            L PD  TYS ++  + K G  +  LS  ++        D + +S L ++  +  DY   
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 312 RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371
             +   +K  G  P+LV YN ++   GKA     ARSL  EM  +G+TP+  + + L+ +
Sbjct: 64  ISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTM 123

Query: 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
           Y + +   +AL ++  MRE K  +D    N ++++   +G+ +EA++LF  M+     +P
Sbjct: 124 YVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG-IEP 182

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           +  SY  +L +YG       AI LF  M    +  NV+    ++   GK    +    + 
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNXMMMIYGKTLEHEKANNLI 242

Query: 492 GVSIDRGVKPDDRLCGCLLSV 512
               +RG++P+      ++S+
Sbjct: 243 QEMQNRGIEPNSITYSTIISI 263



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/242 (21%), Positives = 105/242 (43%), Gaps = 5/242 (2%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           P+  +    L +    + + ++   F  ++ +N+     + YN  M       + +    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNI-EQNVVTYNXMMMIYGKTLEHEKANN 240

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  EM +  IE ++ITYSTII+   +    D A   F+++  +G+  D+V Y  ++  Y 
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYE 300

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           ++G V       +R +    +PD I   +   +   +G  +   +V ++    G   ++ 
Sbjct: 301 RAGLVAHA----KRLLHELKRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDIT 356

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
           V+  ++    K  K G    +FD+M   G  PD   +  ++  YGK      A +++  M
Sbjct: 357 VFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVYMEM 416

Query: 389 RE 390
           +E
Sbjct: 417 QE 418



 Score = 62.4 bits (150), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 87/191 (45%), Gaps = 3/191 (1%)

Query: 355 ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
           E  L+PD  T + LI  +GK      AL   ++M +++ P D +LY+ L+ +   +    
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
           +A  +F  +K S +  PD  +Y AM+N++G       A  L  EM   GV  N    + L
Sbjct: 62  KAISIFSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN- 533
           +    + ++  + + +F    +     D   C  ++ V      +++  K+   +++   
Sbjct: 121 LTMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180

Query: 534 -PKLVAFLNLI 543
            P +V++  L+
Sbjct: 181 EPNVVSYNTLL 191


>gi|255661132|gb|ACU25735.1| pentatricopeptide repeat-containing protein [Verbena perennis]
          Length = 426

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/283 (31%), Positives = 146/283 (51%), Gaps = 7/283 (2%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D  TYST+IT   +  LFD A+ W ++M +  +  D V YS ++++  K     + +S++
Sbjct: 8   DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
            R   SG+ PD +A++ +  +FG++  +   R ++ EM++ GV PN   Y+TLL    + 
Sbjct: 68  SRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVEN 127

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
            K   A S+F EM E     D  T   +I +YG+   AK+A +L+  MR+     + + Y
Sbjct: 128 RKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSY 187

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           NTLL +  D  L  EA  LF  M+  +  + +  +Y +M+ IYG     + A  L +EM 
Sbjct: 188 NTLLRVYGDAELFGEAIHLFRLMQRKN-IEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 246

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVF------GVSIDR 497
             G+  N +  + +I   GK  ++D    +F      GV ID+
Sbjct: 247 NRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQ 289



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/366 (22%), Positives = 169/366 (46%), Gaps = 6/366 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K     P + + YN  +      + F+    L +EM +  +  +  +YS
Sbjct: 60  YSKAISIFSRLKRSGFTP-DLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYS 118

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY + G  +E   L+      
Sbjct: 119 TLLTMYVENRKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 178

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   ++ N+V YN+++   GK  +   A
Sbjct: 179 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKA 238

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R +   +D +LY T++  
Sbjct: 239 NNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVA 298

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K     +PDN      ++I    G ++ A  +F +  + G   
Sbjct: 299 YERAGLVAHAKRLLHELK-----RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVK 353

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           ++     +I    K ++  ++V VF      G  PD  +   +L+        +    V 
Sbjct: 354 DIXVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALILNAYGKLHEFDKANDVY 413

Query: 527 TCLQQA 532
             +Q+ 
Sbjct: 414 MEMQEV 419



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 138/271 (50%), Gaps = 1/271 (0%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
            +M  + +  D + YS +I  +++   + +AI  F R+ ++G  PD V Y+A+++V+ K+
Sbjct: 33  QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKA 92

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
               E  SL      +G  P+  ++S L  M+ E+  +     V  EM+ +    +L   
Sbjct: 93  KLFREARSLISEMRTAGVTPNTASYSTLLTMYVENRKFLEALSVFAEMREIKCLLDLTTC 152

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
           N +++  G+ G    A  LF  M + G+ P+  +   L+++YG A    +A+ L+  M+ 
Sbjct: 153 NIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR 212

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
                + + YN+++ +       E+A  L ++M+ +   +P++ +Y+ +++I+G  G +D
Sbjct: 213 KNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ-NRGIEPNSITYSTIISIWGKVGKLD 271

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
            A  LF+++   GV I+ +    +I    +A
Sbjct: 272 RAAMLFQKLRSSGVDIDQVLYQTMIVAYERA 302



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 125/261 (47%), Gaps = 1/261 (0%)

Query: 252 GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGI 311
            L PD  TYS ++  + K G  +  LS  ++        D + +S L ++  +  DY   
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 312 RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371
             +   +K  G  P+LV YN ++   GKA     ARSL  EM  +G+TP+  + + L+ +
Sbjct: 64  ISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTM 123

Query: 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
           Y + R   +AL ++  MRE K  +D    N ++++   +G+ +EA++LF  M+     +P
Sbjct: 124 YVENRKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG-IEP 182

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           +  SY  +L +YG       AI LF  M    +  NV+    ++   GK    +    + 
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 242

Query: 492 GVSIDRGVKPDDRLCGCLLSV 512
               +RG++P+      ++S+
Sbjct: 243 QEMQNRGIEPNSITYSTIISI 263



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/242 (21%), Positives = 105/242 (43%), Gaps = 5/242 (2%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           P+  +    L +    + + ++   F  ++ +N+     + YN  M       + +    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNI-EQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  EM +  IE ++ITYSTII+   +    D A   F+++  +G+  D+V Y  ++  Y 
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYE 300

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           ++G V       +R +    +PD I   +   +   +G  +   +V ++    G   ++ 
Sbjct: 301 RAGLVAHA----KRLLHELKRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDIX 356

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
           V+  ++    K  K G    +FD+M   G  PD   +  ++  YGK      A +++  M
Sbjct: 357 VFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALILNAYGKLHEFDKANDVYMEM 416

Query: 389 RE 390
           +E
Sbjct: 417 QE 418



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 87/191 (45%), Gaps = 3/191 (1%)

Query: 355 ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
           E  L+PD  T + LI  +GK      AL   ++M +++ P D +LY+ L+ +   +    
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
           +A  +F  +K S +  PD  +Y AM+N++G       A  L  EM   GV  N    + L
Sbjct: 62  KAISIFSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN- 533
           +    + R+  + + VF    +     D   C  ++ V      +++  K+   +++   
Sbjct: 121 LTMYVENRKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180

Query: 534 -PKLVAFLNLI 543
            P +V++  L+
Sbjct: 181 EPNVVSYNTLL 191


>gi|242096872|ref|XP_002438926.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
 gi|241917149|gb|EER90293.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
          Length = 924

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/366 (23%), Positives = 172/366 (46%), Gaps = 5/366 (1%)

Query: 201 RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTY 260
           R  +  +++  EM      L+ +TY+T+I    R    +EA  + + M   GL+PD  TY
Sbjct: 257 RDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGAIEEAFGYKKEMEDYGLVPDGFTY 316

Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
            AI++   K G+ ++   L +    +G  P+ + +S L   F   G+ D    +++EM +
Sbjct: 317 GAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLIDGFMRQGNADEAFKIVKEMSA 376

Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380
            GVQPN + Y+ L+  + K G+ G A  +  +M + G   D  T   +I+ + +    ++
Sbjct: 377 AGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIGYMADTMTYNLVIEGHLRQHNKEE 436

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
           A  L   MR+     +   Y+ ++N    IG  E A  L E M ++D  KP+ + Y  ++
Sbjct: 437 AFLLLNEMRKGGISPNVYTYSIIINGLCQIGESERASGLLEQM-IADGLKPNAFVYAPLI 495

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
           + Y   G+   A E  ++M+   +  ++     LI  L    ++D+ +  +   +++G +
Sbjct: 496 SGYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQ 555

Query: 501 PDDRLCGCLLSVVSLCETSEDVGKVITCLQQA--NPKLVAFLNLIED--NSTGFENIKEE 556
           P+D   G L+   S+    E   +++  +  +  NP    +  ++E    S   E +   
Sbjct: 556 PNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFKSDNLEKVSST 615

Query: 557 FRNVIK 562
            +++++
Sbjct: 616 LKSMLE 621



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/285 (22%), Positives = 139/285 (48%), Gaps = 2/285 (0%)

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
           EQL ++M+++ +  ++  Y+ I+    + +  ++     + M + GLMPD   Y  ++  
Sbjct: 578 EQLLHQMLNSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHN 637

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
            + SG ++  +S+      +G  PD + +  L   F ++ D +    +L EM   G++P 
Sbjct: 638 LSSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLISGFCKAADMEKAVGLLDEMAKKGIEPG 697

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
           +  YN L++   K+     AR++F+ ++  GL P+  T T LI  Y KA   +DA++L+ 
Sbjct: 698 ISCYNALIDGFCKSDDISHARNIFNSIICKGLPPNCVTYTTLIDGYCKAGDIRDAIDLYN 757

Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
            M       D  +Y+ L   C++ G +++A  + E+M    Y      S+  +++ +   
Sbjct: 758 EMLTEGVAPDAFVYSVLAAGCSNSGDLQQALFITEEMIARGYAIIS--SFNTLVHGFCKR 815

Query: 447 GNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           G +   ++    M +  +  +++    ++  LG+A ++ +   +F
Sbjct: 816 GKLQETVKFLHVMMDKDIVPSLLTVENIVIGLGEAGKLSEAHTIF 860



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 79/339 (23%), Positives = 153/339 (45%), Gaps = 15/339 (4%)

Query: 136 NTEEAFLRAITEIPHQPTRENAL---LILNSL---KFWQKSYFFFNWIKSQNLFPMETIF 189
           N EEAFL  + E+       N     +I+N L      +++      + +  L P   ++
Sbjct: 433 NKEEAFL-LLNEMRKGGISPNVYTYSIIINGLCQIGESERASGLLEQMIADGLKPNAFVY 491

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
             +     R G  F L  +   +M    +  D   Y+++I         DEAIE+++ M 
Sbjct: 492 APLISGYCREG-SFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEML 550

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
           + G  P++ TY  ++  Y+ +G +E+   L  + + SG  P+   ++ + + + +S + +
Sbjct: 551 EKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFKSDNLE 610

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
            +   L+ M   G+ P+  +Y  ++  +  +G    A S+   + ++GL PD     +LI
Sbjct: 611 KVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLI 670

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
             + KA   + A+ L + M +         YN L++       +  A  +F     S  C
Sbjct: 671 SGFCKAADMEKAVGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHARNIFN----SIIC 726

Query: 430 K---PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
           K   P+  +YT +++ Y   G++ +AI+L+ EM   GVA
Sbjct: 727 KGLPPNCVTYTTLIDGYCKAGDIRDAIDLYNEMLTEGVA 765



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 77/365 (21%), Positives = 165/365 (45%), Gaps = 5/365 (1%)

Query: 141 FLRAITEIPHQP-TRENALLILNSLKFWQK--SYFFFNWIKSQNLFPMETIFYNVTMKSL 197
            L+ +T+I +   T    L+I   L+   K  ++   N ++   + P     Y++ +  L
Sbjct: 405 ILKQMTKIGYMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISP-NVYTYSIIINGL 463

Query: 198 RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDE 257
               + +    L  +M+++ ++ +   Y+ +I+   R   F  A E  ++M +  L PD 
Sbjct: 464 CQIGESERASGLLEQMIADGLKPNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDL 523

Query: 258 VTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQE 317
             Y++++   +  GK++E +  Y+  +  G++P+   +  L   +  +G+ +    +L +
Sbjct: 524 YCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQ 583

Query: 318 MKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARW 377
           M + G+ PN  +Y  +LE   K+       S    M+E GL PD +    +I     +  
Sbjct: 584 MLNSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGH 643

Query: 378 AKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYT 437
            + A+ +   + +N    D ++Y +L++       +E+A  L ++M      +P    Y 
Sbjct: 644 MQAAVSVLSVIEKNGLVPDSLIYGSLISGFCKAADMEKAVGLLDEMAKKGI-EPGISCYN 702

Query: 438 AMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDR 497
           A+++ +    ++ +A  +F  +   G+  N +  T LI    KA  I D + ++   +  
Sbjct: 703 ALIDGFCKSDDISHARNIFNSIICKGLPPNCVTYTTLIDGYCKAGDIRDAIDLYNEMLTE 762

Query: 498 GVKPD 502
           GV PD
Sbjct: 763 GVAPD 767



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/213 (30%), Positives = 106/213 (49%), Gaps = 5/213 (2%)

Query: 292 PIAFSVLGKMFGESGDY-DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
           P+   VL   + ++G   DG   VL  MK LG+ P+L   N LL+ + +A    L   + 
Sbjct: 173 PVVLDVLVDTYKKTGRVRDGAEVVLL-MKDLGLAPSLRCCNGLLKDLLRADALDLLWKVR 231

Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
             M  +G++PD  T + LI+ Y K R  + A ++ E MRE    ++ + YNTL+      
Sbjct: 232 GFMEGAGISPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRA 291

Query: 411 GLVEEAERLFEDMKLSDY-CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVM 469
           G +EEA    ++M+  DY   PD ++Y A++N     G  D A  L +EMS  G+  NV+
Sbjct: 292 GAIEEAFGYKKEME--DYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVV 349

Query: 470 GCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
             + LI    +    D+  ++       GV+P+
Sbjct: 350 VYSTLIDGFMRQGNADEAFKIVKEMSAAGVQPN 382



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/282 (20%), Positives = 105/282 (37%), Gaps = 56/282 (19%)

Query: 161 LNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIEL 220
           L+S    Q +    + I+   L P +++ Y   +         +    L +EM    IE 
Sbjct: 638 LSSSGHMQAAVSVLSVIEKNGLVP-DSLIYGSLISGFCKAADMEKAVGLLDEMAKKGIEP 696

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
               Y+ +I    + +    A   F  +   GL P+ VTY+ ++D Y K+G + + + LY
Sbjct: 697 GISCYNALIDGFCKSDDISHARNIFNSIICKGLPPNCVTYTTLIDGYCKAGDIRDAIDLY 756

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG------------------ 322
              +  G  PD   +SVL      SGD     ++ +EM + G                  
Sbjct: 757 NEMLTEGVAPDAFVYSVLAAGCSNSGDLQQALFITEEMIARGYAIISSFNTLVHGFCKRG 816

Query: 323 ----------------VQPNLVVYNTLLEAMGKAGKPGLAR------------------- 347
                           + P+L+    ++  +G+AGK   A                    
Sbjct: 817 KLQETVKFLHVMMDKDIVPSLLTVENIVIGLGEAGKLSEAHTIFVELQQKNASHRDTDHL 876

Query: 348 -SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            SLF +M+  GL P +  +  +I+ + K  +   AL L + +
Sbjct: 877 SSLFTDMINQGLVPLD-VIHNMIQSHCKQGYLDKALMLHDAL 917


>gi|297802850|ref|XP_002869309.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315145|gb|EFH45568.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1114

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/305 (27%), Positives = 147/305 (48%), Gaps = 7/305 (2%)

Query: 201 RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTY 260
           R    + Q  +EM  +    D +T++ ++    +   F EA    + M   G++P+  TY
Sbjct: 344 RDLDSVNQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFAKLDVMRDQGILPNLHTY 403

Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
           + ++    +  ++++ L +++   + G KP    + V    +G+SGD        ++MK+
Sbjct: 404 NTLICGLLRVHRLDDALEIFDNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKT 463

Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380
            G+ PN+V  N  L ++ KAG+   A+ +F  + + GL PD  T   ++K Y K     +
Sbjct: 464 KGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDE 523

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLF---EDMKLSDYCKPDNYSYT 437
           A++L   M EN    D I+ N+L+N       V+EA ++F   ++MKL    KP   +Y 
Sbjct: 524 AIKLLSEMVENCCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKL----KPTVVTYN 579

Query: 438 AMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDR 497
            +L   G  G +  AIELFE M + G   N +    L  CL K   +   +++    +D 
Sbjct: 580 TLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDM 639

Query: 498 GVKPD 502
           G  PD
Sbjct: 640 GCVPD 644



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 141/315 (44%), Gaps = 36/315 (11%)

Query: 224  TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
            TY+ +I      ++ + A + F ++  TG +PD  TY+ +LD Y KSGK++E+  +Y+  
Sbjct: 789  TYNLLIGGLLEADMIEIAQDVFLQVKNTGCIPDVATYNFLLDAYGKSGKIDELFEIYKEM 848

Query: 284  VASGWKPDPIAFSVLGKMFGESGDYDGI-------------------------------- 311
             A   +P+ I  +++     ++G+ D                                  
Sbjct: 849  SAHECEPNTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGR 908

Query: 312  ----RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
                + + + M   G +PN  +YN L+   GKAG+   A +LF  MV+ G+ PD KT + 
Sbjct: 909  LYEAKQLFEGMSDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSV 968

Query: 368  LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
            L+          + L  +  ++E+    D + YN ++N       +EEA  LF +MK S 
Sbjct: 969  LVDCLCMVGRVDEGLHYFRELKESGLNPDVVCYNLIINGLGKFHRLEEALVLFNEMKKSR 1028

Query: 428  YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
               PD Y+Y +++   G  G V+ A +++ E+   G+  NV     LI+    + + +  
Sbjct: 1029 GITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHA 1088

Query: 488  VRVFGVSIDRGVKPD 502
              V+   +  G  P+
Sbjct: 1089 YAVYQTMVTGGFSPN 1103



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 147/315 (46%), Gaps = 5/315 (1%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
           TI   V  ++ +    +++++++ +E    ++    +TY+ +I         D A E F 
Sbjct: 264 TICIRVLGRAGKINEAYEILKRMDDEGCGPDV----VTYTVLIDALCTARKLDCAKEVFA 319

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
           +M      PD VTY  +LD ++ +  ++ V   +      G  PD + F++L     ++G
Sbjct: 320 KMKTGRHKPDRVTYITLLDRFSDNRDLDSVNQFWSEMEKDGHVPDVVTFTILVDALCKAG 379

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
           ++      L  M+  G+ PNL  YNTL+  + +  +   A  +FD M   G+ P   T  
Sbjct: 380 NFGEAFAKLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALEIFDNMESLGVKPTAYTYI 439

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
             I  YGK+  +  ALE +E+M+      + +  N  L   A  G   EA+++F  +K  
Sbjct: 440 VFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDI 499

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
               PD+ +Y  M+  Y   G +D AI+L  EM E     +V+    LI  L KA R+D+
Sbjct: 500 GLV-PDSVTYNMMMKCYSKVGEIDEAIKLLSEMVENCCEPDVIVVNSLINTLYKADRVDE 558

Query: 487 LVRVFGVSIDRGVKP 501
             ++F    +  +KP
Sbjct: 559 AWKMFMRMKEMKLKP 573



 Score =  115 bits (288), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 84/342 (24%), Positives = 157/342 (45%), Gaps = 1/342 (0%)

Query: 160 ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIE 219
           +L S      S+ +F  +   +     T   N  +++LR   + + +  + + M    I+
Sbjct: 93  VLMSFPDTDSSFSYFKSVAGNSNLVHTTETCNYMLEALRVDGKIEEMAYVFDLMQKRIIK 152

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
            D  TY TI  C        +A     +M + G + +  +Y+ ++ +  KS    E + +
Sbjct: 153 RDTNTYLTIFKCLSVKGGLRQAPFALRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEV 212

Query: 280 YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
           Y R +  G++P    +S L    G+  D + +  +L+EM++LG++PN+  +   +  +G+
Sbjct: 213 YRRMILDGFRPSLQTYSSLMVGLGKRRDIESVMGLLKEMETLGLKPNVYTFTICIRVLGR 272

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
           AGK   A  +   M + G  PD  T T LI     AR    A E++ +M+  +   D + 
Sbjct: 273 AGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFAKMKTGRHKPDRVT 332

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           Y TLL+  +D   ++   + + +M+  D   PD  ++T +++     GN   A    + M
Sbjct: 333 YITLLDRFSDNRDLDSVNQFWSEME-KDGHVPDVVTFTILVDALCKAGNFGEAFAKLDVM 391

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
            + G+  N+     LI  L +  R+DD + +F      GVKP
Sbjct: 392 RDQGILPNLHTYNTLICGLLRVHRLDDALEIFDNMESLGVKP 433



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 104/410 (25%), Positives = 172/410 (41%), Gaps = 63/410 (15%)

Query: 128 ARKLNDCDNTEEAFLRAITEIPHQPTRENALLILNSL----------KFWQKSYFFFNWI 177
           ARKL DC   +E F +  T   H+P R   + +L+            +FW +       +
Sbjct: 308 ARKL-DC--AKEVFAKMKTG-RHKPDRVTYITLLDRFSDNRDLDSVNQFWSE-------M 356

Query: 178 KSQNLFP---METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKR 234
           +     P     TI  +   K+  FG  F  ++ + ++ +   +     TY+T+I    R
Sbjct: 357 EKDGHVPDVVTFTILVDALCKAGNFGEAFAKLDVMRDQGILPNLH----TYNTLICGLLR 412

Query: 235 CNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIA 294
            +  D+A+E F+ M   G+ P   TY   +D Y KSG     L  +E+    G  P+ +A
Sbjct: 413 VHRLDDALEIFDNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVA 472

Query: 295 FSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMV 354
            +       ++G     + +   +K +G+ P+ V YN +++   K G+   A  L  EMV
Sbjct: 473 CNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMV 532

Query: 355 ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
           E+   PD   + +LI    KA    +A +++ RM+E K     + YNTLL      G ++
Sbjct: 533 ENCCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQ 592

Query: 415 EAERLFEDM---------------------------------KLSDY-CKPDNYSYTAML 440
           EA  LFE M                                 K+ D  C PD ++Y  ++
Sbjct: 593 EAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTII 652

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRV 490
                 G V  A+  F +M +L     V  CT L+  + KA  I+D  ++
Sbjct: 653 FGLVKNGQVKEAMCFFHQMKKLVYPDFVTLCT-LLPGVVKAGLIEDAYKI 701



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 146/308 (47%), Gaps = 6/308 (1%)

Query: 245  FERMYKT-GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
            FE+  K  G+ P   TY+ ++    ++  +E    ++ +   +G  PD   ++ L   +G
Sbjct: 774  FEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKNTGCIPDVATYNFLLDAYG 833

Query: 304  ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF-DEMVESGLTPDE 362
            +SG  D +  + +EM +   +PN + +N ++  + KAG    A  L+ D M +   +P  
Sbjct: 834  KSGKIDELFEIYKEMSAHECEPNTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTA 893

Query: 363  KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED 422
             T   LI    K+    +A +L+E M +     +  +YN L+N     G  + A  LF+ 
Sbjct: 894  CTYGPLIDGLSKSGRLYEAKQLFEGMSDYGCRPNCAIYNILINGFGKAGEADAACALFKR 953

Query: 423  MKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKAR 482
            M + +  +PD  +Y+ +++     G VD  +  F E+ E G+  +V+    +I  LGK  
Sbjct: 954  M-VKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFRELKESGLNPDVVCYNLIINGLGKFH 1012

Query: 483  RIDDLVRVFG-VSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAF 539
            R+++ + +F  +   RG+ PD      L+  + +    E+ GK+   +Q+A   P +  F
Sbjct: 1013 RLEEALVLFNEMKKSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTF 1072

Query: 540  LNLIEDNS 547
              LI   S
Sbjct: 1073 NALIRGYS 1080



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 99/413 (23%), Positives = 174/413 (42%), Gaps = 44/413 (10%)

Query: 184  PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
            P  TI +N     L    +  L  ++  +M+      D  TY+TII    +     EA+ 
Sbjct: 607  PPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMC 666

Query: 244  WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV--------------------------- 276
            +F +M K  + PD VT   +L    K+G +E+                            
Sbjct: 667  FFHQMKKL-VYPDFVTLCTLLPGVVKAGLIEDAYKIIANFLYSCADQPANLFWEDLMGSI 725

Query: 277  ---------LSLYERGVASGW--KPDPIAFSVLGKMFGESGDYDGIRYVLQEM-KSLGVQ 324
                     +S  ER VA+G     D I   ++   F +  +  G R + ++  K LGVQ
Sbjct: 726  LAEAGIDNAVSFSERLVANGICRDGDSILVPIIRYSF-KHNNASGARMLFEKFTKDLGVQ 784

Query: 325  PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384
            P L  YN L+  + +A    +A+ +F ++  +G  PD  T   L+  YGK+    +  E+
Sbjct: 785  PKLPTYNLLIGGLLEADMIEIAQDVFLQVKNTGCIPDVATYNFLLDAYGKSGKIDELFEI 844

Query: 385  WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYG 444
            ++ M  ++   + I +N +++     G V++A  L+ D+       P   +Y  +++   
Sbjct: 845  YKEMSAHECEPNTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLS 904

Query: 445  SGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR 504
              G +  A +LFE MS+ G   N      LI   GKA   D    +F   +  GV+PD +
Sbjct: 905  KSGRLYEAKQLFEGMSDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLK 964

Query: 505  LCGCLLSVVSLCETSEDVGKVITCLQQA--NPKLVAFLNLIEDNSTGFENIKE 555
                L+  + +    ++       L+++  NP +V + NLI +    F  ++E
Sbjct: 965  TYSVLVDCLCMVGRVDEGLHYFRELKESGLNPDVVCY-NLIINGLGKFHRLEE 1016



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 116/244 (47%), Gaps = 1/244 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D++TY+ ++ C  +    DEAI+    M +    PD +  +++++   K+ +V+E   ++
Sbjct: 504 DSVTYNMMMKCYSKVGEIDEAIKLLSEMVENCCEPDVIVVNSLINTLYKADRVDEAWKMF 563

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
            R      KP  + ++ L    G++G       + + M   G  PN + +NTL + + K 
Sbjct: 564 MRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKN 623

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
            +  LA  +  +M++ G  PD  T   +I    K    K+A+  + +M++  +P DF+  
Sbjct: 624 DEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKLVYP-DFVTL 682

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
            TLL      GL+E+A ++  +   S   +P N  +  ++    +   +DNA+   E + 
Sbjct: 683 CTLLPGVVKAGLIEDAYKIIANFLYSCADQPANLFWEDLMGSILAEAGIDNAVSFSERLV 742

Query: 461 ELGV 464
             G+
Sbjct: 743 ANGI 746



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 84/180 (46%), Gaps = 1/180 (0%)

Query: 190  YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
            YN+ +       +      L   MV   +  D  TYS ++ C       DE + +F  + 
Sbjct: 931  YNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFRELK 990

Query: 250  KTGLMPDEVTYSAILDVYAKSGKVEEVLSLY-ERGVASGWKPDPIAFSVLGKMFGESGDY 308
            ++GL PD V Y+ I++   K  ++EE L L+ E   + G  PD   ++ L    G +G  
Sbjct: 991  ESGLNPDVVCYNLIINGLGKFHRLEEALVLFNEMKKSRGITPDLYTYNSLILNLGIAGMV 1050

Query: 309  DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
            +    +  E++  G++PN+  +N L+     +GKP  A +++  MV  G +P+  T   L
Sbjct: 1051 EEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQL 1110



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 130/299 (43%), Gaps = 16/299 (5%)

Query: 319 KSLGVQPNLV----VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK---I 371
           KS+    NLV      N +LEA+   GK      +FD M +  +  D  T   + K   +
Sbjct: 108 KSVAGNSNLVHTTETCNYMLEALRVDGKIEEMAYVFDLMQKRIIKRDTNTYLTIFKCLSV 167

Query: 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
            G  R A  AL    +MRE  + ++   YN L+++        EA  ++  M L  + +P
Sbjct: 168 KGGLRQAPFALR---KMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILDGF-RP 223

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
              +Y++++   G   ++++ + L +EM  LG+  NV   T  I+ LG+A +I++   + 
Sbjct: 224 SLQTYSSLMVGLGKRRDIESVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEIL 283

Query: 492 GVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQA--NPKLVAFLNLIE--DNS 547
               D G  PD      L+  +      +   +V   ++     P  V ++ L++   ++
Sbjct: 284 KRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFAKMKTGRHKPDRVTYITLLDRFSDN 343

Query: 548 TGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLH 606
              +++ + +  + KD  V     F   +  +C+  N  E A   L +    G+ P LH
Sbjct: 344 RDLDSVNQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGE-AFAKLDVMRDQGILPNLH 401


>gi|41152692|dbj|BAD08216.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 401

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 150/292 (51%), Gaps = 1/292 (0%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
           ++M+   I  + +TY++II    +    D+A+E    M K+G+MPD +TY++I+  +  S
Sbjct: 105 DKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSS 164

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
           G+ +E +   ++  + G +PD + ++ L     ++G     R +   M   G++P++  Y
Sbjct: 165 GQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTY 224

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
            TLL+     G       L D MV +G+ P+    + L+  Y K    ++A+ ++ +MR+
Sbjct: 225 GTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQ 284

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
                + + Y T++++    G VE+A   FE M + +  +PD+  Y ++++        +
Sbjct: 285 QGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQM-IDEGLRPDSIVYNSLIHSLCIFDKWE 343

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            A ELF EM + G+ ++ +    +I    K  R+ +  ++F + +  GVKPD
Sbjct: 344 KAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKPD 395



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 150/331 (45%), Gaps = 51/331 (15%)

Query: 190 YNVTMKSL----RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           YN+ +  L    R     +L+  +A++    +   D ++YST+I        F E     
Sbjct: 54  YNILLNGLCDENRSQEALELLHIMADD--GGDCPPDVVSYSTVIN-----GFFKEG--DL 104

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           ++M    + P+ VTY++I+    K+  V++ + +    V SG  PD + ++ +   F  S
Sbjct: 105 DKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSS 164

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G        L++M+S GV+P++V YN+L++ + K G+   AR +FD M + GL PD  T 
Sbjct: 165 GQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITT- 223

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
                                             Y TLL   A  G + E   L  D+ +
Sbjct: 224 ----------------------------------YGTLLQGYATKGALVEMHGLL-DLMV 248

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
            +   P++Y ++ ++  Y     V+ A+ +F +M + G+  N +    +I  L K+ R++
Sbjct: 249 RNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVE 308

Query: 486 DLVRVFGVSIDRGVKPDDRLCGCLLSVVSLC 516
           D +  F   ID G++PD  +   L+   SLC
Sbjct: 309 DAMLYFEQMIDEGLRPDSIVYNSLIH--SLC 337



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 84/160 (52%)

Query: 206 IEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
           +  L + MV N I  ++  +S ++    +    +EA+  F +M + GL P+ VTY  ++D
Sbjct: 240 MHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVID 299

Query: 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325
           V  KSG+VE+ +  +E+ +  G +PD I ++ L         ++    +  EM   G+  
Sbjct: 300 VLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICL 359

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           + + +N+++++  K G+   +  LFD MV  G+ PD  TL
Sbjct: 360 STIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKPDIITL 399


>gi|414885390|tpg|DAA61404.1| TPA: hypothetical protein ZEAMMB73_280584 [Zea mays]
          Length = 645

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/333 (24%), Positives = 167/333 (50%), Gaps = 8/333 (2%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIIT-- 230
            F+ +  + L P   + YN  + + RF       +++ ++MV+ +I+ + +TY+T+I   
Sbjct: 173 LFDEMLRRGLVP-SVVTYNTLINACRFQGTVAKAQEVWDQMVAQQIDPNVVTYTTMICAL 231

Query: 231 CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
           C + C    +A   F+ M + G+ P++ TY+ ++  + +   V   + LY+  + SG  P
Sbjct: 232 CEEGC--IGDAERLFDAMKEAGMQPNQYTYNVLMSGHCQRDDVNSAVVLYQELLKSGLNP 289

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
           + + F+ L   F ++  +   + +  EM   GV P + VYN+L++   ++G    A +L+
Sbjct: 290 NAVIFTTLIDGFCKAKRFSEAKGMFLEMPRFGVAPTVPVYNSLMDGAFRSGNAQEALALY 349

Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
            EM   GL PDE T + +++          A    + ++E+   ++   YN L++    I
Sbjct: 350 QEMTRLGLCPDEFTCSIVVRGLCDGGQMHVADRFLQGVQEDGVNLNAAAYNALIDEYCRI 409

Query: 411 GLVEEAERLFEDMKLSDY-CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVM 469
           G +EEA  L    ++++   +P+  SY+++++ +   G +  A+ ++ EM   G+  NV+
Sbjct: 410 GNLEEA--LATCTRMTEVGIEPNVVSYSSLIDGHSKRGKMQIAMAIYTEMVAKGIEPNVV 467

Query: 470 GCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
             T LI    K   ID   R+    I+ G+ P+
Sbjct: 468 TYTALIHGHAKNGGIDAAFRLHKEMIENGISPN 500



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 74/346 (21%), Positives = 167/346 (48%), Gaps = 7/346 (2%)

Query: 158 LLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNE 217
           ++ L+ +    ++ + F  +++    P      +  +K+ R G  ++L +    EM+   
Sbjct: 126 VIALSQMGLLDEALYVFRRLRTLPALPACNAVLDGLVKARRPGCAWELFD----EMLRRG 181

Query: 218 IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL 277
           +    +TY+T+I   +      +A E +++M    + P+ VTY+ ++    + G + +  
Sbjct: 182 LVPSVVTYNTLINACRFQGTVAKAQEVWDQMVAQQIDPNVVTYTTMICALCEEGCIGDAE 241

Query: 278 SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
            L++    +G +P+   ++VL     +  D +    + QE+   G+ PN V++ TL++  
Sbjct: 242 RLFDAMKEAGMQPNQYTYNVLMSGHCQRDDVNSAVVLYQELLKSGLNPNAVIFTTLIDGF 301

Query: 338 GKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM-RENKWPMD 396
            KA +   A+ +F EM   G+ P      +L+    ++  A++AL L++ M R    P +
Sbjct: 302 CKAKRFSEAKGMFLEMPRFGVAPTVPVYNSLMDGAFRSGNAQEALALYQEMTRLGLCPDE 361

Query: 397 FILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELF 456
           F     +  +C D G +  A+R  + ++  D    +  +Y A+++ Y   GN++ A+   
Sbjct: 362 FTCSIVVRGLC-DGGQMHVADRFLQGVQ-EDGVNLNAAAYNALIDEYCRIGNLEEALATC 419

Query: 457 EEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
             M+E+G+  NV+  + LI    K  ++   + ++   + +G++P+
Sbjct: 420 TRMTEVGIEPNVVSYSSLIDGHSKRGKMQIAMAIYTEMVAKGIEPN 465



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 84/379 (22%), Positives = 146/379 (38%), Gaps = 89/379 (23%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F+ +K   + P +   YNV M              L  E++ + +  + + ++T+I   
Sbjct: 243 LFDAMKEAGMQPNQYT-YNVLMSGHCQRDDVNSAVVLYQELLKSGLNPNAVIFTTLIDGF 301

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +   F EA   F  M + G+ P    Y++++D   +SG  +E L+LY+     G  PD 
Sbjct: 302 CKAKRFSEAKGMFLEMPRFGVAPTVPVYNSLMDGAFRSGNAQEALALYQEMTRLGLCPDE 361

Query: 293 IAFSVLGKMFGESGDY------------DGIRY-----------------------VLQE 317
              S++ +   + G              DG+                             
Sbjct: 362 FTCSIVVRGLCDGGQMHVADRFLQGVQEDGVNLNAAAYNALIDEYCRIGNLEEALATCTR 421

Query: 318 MKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARW 377
           M  +G++PN+V Y++L++   K GK  +A +++ EMV  G+ P+  T TALI  + K   
Sbjct: 422 MTEVGIEPNVVSYSSLIDGHSKRGKMQIAMAIYTEMVAKGIEPNVVTYTALIHGHAKNGG 481

Query: 378 AKDALELWERMRENKWPMDFILYNTLLN---------------------MCADI------ 410
              A  L + M EN    + I  + L++                      C+DI      
Sbjct: 482 IDAAFRLHKEMIENGISPNAITVSVLVDGLCRENRVQEAVRFVMEYSGLKCSDIHSVFSN 541

Query: 411 -------------------------GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445
                                    G   EA +LF  M+ S    PD+++YT ++     
Sbjct: 542 FTIEEECLIPNSVIYMTLIYGLYLDGQHCEAGKLFSYMRKSGMI-PDSFTYTLLIRGQCM 600

Query: 446 GGNVDNAIELFEEMSELGV 464
            G V NA+ L+ +M ++GV
Sbjct: 601 LGYVLNAMMLYADMMKIGV 619



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 74/315 (23%), Positives = 130/315 (41%), Gaps = 45/315 (14%)

Query: 290 PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSL 349
           P P A  VL     + G  D   YV + +++L   P L   N +L+ + KA +PG A  L
Sbjct: 118 PAP-ALGVLVIALSQMGLLDEALYVFRRLRTL---PALPACNAVLDGLVKARRPGCAWEL 173

Query: 350 FDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCAD 409
           FDEM+  GL P   T   LI           A E+W++M   +   + + Y T++    +
Sbjct: 174 FDEMLRRGLVPSVVTYNTLINACRFQGTVAKAQEVWDQMVAQQIDPNVVTYTTMICALCE 233

Query: 410 IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE----------- 458
            G + +AERLF+ MK +   +P+ Y+Y  +++ +    +V++A+ L++E           
Sbjct: 234 EGCIGDAERLFDAMKEAGM-QPNQYTYNVLMSGHCQRDDVNSAVVLYQELLKSGLNPNAV 292

Query: 459 ------------------------MSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVS 494
                                   M   GVA  V     L+    ++    + + ++   
Sbjct: 293 IFTTLIDGFCKAKRFSEAKGMFLEMPRFGVAPTVPVYNSLMDGAFRSGNAQEALALYQEM 352

Query: 495 IDRGVKPDDRLCGCLLSVVSLCETSE--DVGKVITCLQQANPKL-VAFLNLIEDNSTGFE 551
              G+ PD+  C   + V  LC+  +     + +  +Q+    L  A  N + D      
Sbjct: 353 TRLGLCPDEFTCS--IVVRGLCDGGQMHVADRFLQGVQEDGVNLNAAAYNALIDEYCRIG 410

Query: 552 NIKEEFRNVIKDTEV 566
           N++E      + TEV
Sbjct: 411 NLEEALATCTRMTEV 425


>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 652

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 109/433 (25%), Positives = 191/433 (44%), Gaps = 53/433 (12%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           +N  + SL   + +  +  L+ +M    I+ + +  + +I C  +  L   A   F ++ 
Sbjct: 88  FNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKIL 147

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
           K G +PD +T++ ++      G++++    +++ VA G+  D I++  L     + G+  
Sbjct: 148 KMGYVPDTITFTTLIKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETR 207

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               +LQ +    VQPN+V+YNT++++M K      A  LF EM+  G++PD  T +ALI
Sbjct: 208 AALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALI 267

Query: 370 KIYGKARWAKDALELWERM-RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK---- 424
             +       DA++L+ +M  EN  P D   +N L+N     G ++E + +F+ M     
Sbjct: 268 SGFCILGKLNDAIDLFNKMILENIKP-DVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGI 326

Query: 425 ----------LSDYC--------------------KPDNYSYTAMLNIYGSGGNVDNAIE 454
                     +  YC                     PD  SY+ M+N +      D A+ 
Sbjct: 327 KPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMN 386

Query: 455 LFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVS 514
           LF+EM    +  +V+  + LI  L K+ RI   +++     DRGV P  R    +L   +
Sbjct: 387 LFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILD--A 444

Query: 515 LCETSEDVGKVITCLQQ-----ANPKLVAFLNLI---------EDNSTGFENIKEEFRNV 560
           LC+  + V K I  L +       P +  +  LI         ED    FE +  +  N+
Sbjct: 445 LCKIHQ-VDKAIALLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVKGHNL 503

Query: 561 IKDTEVDARRPFC 573
             DT     + FC
Sbjct: 504 NVDTYTIMIQGFC 516



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 171/373 (45%), Gaps = 13/373 (3%)

Query: 201 RQFQLIEQLANEMVS----NEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPD 256
           ++FQ  + L N   +    +  +++ I+YS+  T     N  D+A+  F R+ +    P 
Sbjct: 25  KKFQSFQFLKNTHFNFIPYSSSKINFISYSSTSTTFHSNNDVDDAVSLFNRLLRRNTTPP 84

Query: 257 EVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQ 316
              ++ IL    KS     VL L ++    G KP+ +  ++L   F + G       V  
Sbjct: 85  AFEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFA 144

Query: 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
           ++  +G  P+ + + TL++ +   G+   A    D++V  G   D+ +   LI    K  
Sbjct: 145 KILKMGYVPDTITFTTLIKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVG 204

Query: 377 WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY 436
             + AL+L +R+  N    + ++YNT+++    + LV EA  LF +M +S    PD  +Y
Sbjct: 205 ETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEM-ISKGISPDVVTY 263

Query: 437 TAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496
           +A+++ +   G +++AI+LF +M    +  +V     L+    K  ++ +   VF + + 
Sbjct: 264 SALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMK 323

Query: 497 RGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQA--NPKLVAFLNLIEDNSTGFENIK 554
           +G+KP+      L+    L +       +   + Q   NP + ++  +I     GF  IK
Sbjct: 324 QGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMI----NGFCKIK 379

Query: 555 --EEFRNVIKDTE 565
             +E  N+ K+  
Sbjct: 380 KFDEAMNLFKEMH 392



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 139/293 (47%), Gaps = 1/293 (0%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L N+M+   I+ D  T++ ++    +     E    F+ M K G+ P+ VTY++++D Y 
Sbjct: 282 LFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYC 341

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
              +V +  S++      G  PD  ++S++   F +   +D    + +EM    + P++V
Sbjct: 342 LVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVV 401

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            Y++L++ + K+G+   A  L D+M + G+ P  +T  +++    K      A+ L  ++
Sbjct: 402 TYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIALLTKL 461

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
           ++     +   Y+ L+      G +E+A ++FE + +  +   +  +YT M+  +   G 
Sbjct: 462 KDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVKGH-NLNVDTYTIMIQGFCVEGL 520

Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
            + A+ L  +M + G   +      +I  L K    D   ++    I RGV+P
Sbjct: 521 FNEALALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLREMIARGVRP 573


>gi|115466100|ref|NP_001056649.1| Os06g0125300 [Oryza sativa Japonica Group]
 gi|6983867|dbj|BAA90802.1| salt-inducible protein-like [Oryza sativa Japonica Group]
 gi|113594689|dbj|BAF18563.1| Os06g0125300 [Oryza sativa Japonica Group]
 gi|125553869|gb|EAY99474.1| hypothetical protein OsI_21443 [Oryza sativa Indica Group]
 gi|125595884|gb|EAZ35664.1| hypothetical protein OsJ_19951 [Oryza sativa Japonica Group]
          Length = 535

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 143/289 (49%), Gaps = 2/289 (0%)

Query: 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
            D A++  + M   G+ PD VTY+ +L  Y   G +E    L++  +ASG +PD   ++V
Sbjct: 209 LDAALKVLDEMPGLGITPDVVTYTTVLSAYCGKGDIEGAQKLFDDIIASGRRPDVTMYTV 268

Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
           L   + + G+      ++ EM++  VQPN V Y+ ++EA  K  KP  AR    EM+ +G
Sbjct: 269 LIDGYCQCGNLQDAARIMDEMEAARVQPNEVTYSVVIEACCKEEKPIEARDFMREMLGAG 328

Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417
             PD      ++ +  +   +++A +LW  M +   P D ++ +TL+      G+V EA 
Sbjct: 329 YVPDTALGAKVVDVLCQDGKSEEAYQLWRWMEKKNVPPDNMVTSTLIYWLCKNGMVREAR 388

Query: 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
            LF++++     KP   +Y ++++       +  A  ++++M E G   N M    LI+ 
Sbjct: 389 NLFDELERG--FKPSLLTYNSLISGLCENEELQEAGRVWDDMVERGYEPNAMTYEALIKG 446

Query: 478 LGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           L K  + ++   VF   + RG KP   L   L+  +S     + + K++
Sbjct: 447 LCKTGKPNEGATVFEEMVSRGCKPSSLLFQVLVDSLSEPRHEDTIRKIL 495



 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 108/238 (45%), Gaps = 6/238 (2%)

Query: 290 PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSL 349
           P+ ++ ++L K     GD D    VL EM  LG+ P++V Y T+L A    G    A+ L
Sbjct: 191 PNLVSCNILLKGLVGIGDLDAALKVLDEMPGLGITPDVVTYTTVLSAYCGKGDIEGAQKL 250

Query: 350 FDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCAD 409
           FD+++ SG  PD    T LI  Y +    +DA  + + M   +   + + Y+ ++  C  
Sbjct: 251 FDDIIASGRRPDVTMYTVLIDGYCQCGNLQDAARIMDEMEAARVQPNEVTYSVVIEACCK 310

Query: 410 IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVM 469
                EA     +M  + Y  PD      ++++    G  + A +L+  M +  V  + M
Sbjct: 311 EEKPIEARDFMREMLGAGYV-PDTALGAKVVDVLCQDGKSEEAYQLWRWMEKKNVPPDNM 369

Query: 470 GCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSE--DVGKV 525
             + LI  L K   + +   +F   ++RG KP       L+S   LCE  E  + G+V
Sbjct: 370 VTSTLIYWLCKNGMVREARNLFD-ELERGFKPSLLTYNSLIS--GLCENEELQEAGRV 424



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/278 (21%), Positives = 122/278 (43%), Gaps = 2/278 (0%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + Y   + +       +  ++L ++++++    D   Y+ +I    +C    +A    
Sbjct: 227 DVVTYTTVLSAYCGKGDIEGAQKLFDDIIASGRRPDVTMYTVLIDGYCQCGNLQDAARIM 286

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           + M    + P+EVTYS +++   K  K  E        + +G+ PD    + +  +  + 
Sbjct: 287 DEMEAARVQPNEVTYSVVIEACCKEEKPIEARDFMREMLGAGYVPDTALGAKVVDVLCQD 346

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G  +    + + M+   V P+ +V +TL+  + K G    AR+LFDE+ E G  P   T 
Sbjct: 347 GKSEEAYQLWRWMEKKNVPPDNMVTSTLIYWLCKNGMVREARNLFDEL-ERGFKPSLLTY 405

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
            +LI    +    ++A  +W+ M E  +  + + Y  L+      G   E   +FE+M +
Sbjct: 406 NSLISGLCENEELQEAGRVWDDMVERGYEPNAMTYEALIKGLCKTGKPNEGATVFEEM-V 464

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           S  CKP +  +  +++      + D   ++ E  +  G
Sbjct: 465 SRGCKPSSLLFQVLVDSLSEPRHEDTIRKILETAALYG 502


>gi|125575277|gb|EAZ16561.1| hypothetical protein OsJ_32034 [Oryza sativa Japonica Group]
          Length = 526

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 150/292 (51%), Gaps = 1/292 (0%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
           ++M+   I  + +TY++II    +    D+A+E    M K+G+MPD +TY++I+  +  S
Sbjct: 105 DKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSS 164

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
           G+ +E +   ++  + G +PD + ++ L     ++G     R +   M   G++P++  Y
Sbjct: 165 GQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTY 224

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
            TLL+     G       L D MV +G+ P+    + L+  Y K    ++A+ ++ +MR+
Sbjct: 225 GTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQ 284

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
                + + Y T++++    G VE+A   FE M + +  +PD+  Y ++++        +
Sbjct: 285 QGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQM-IDEGLRPDSIVYNSLIHSLCIFDKWE 343

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            A ELF EM + G+ ++ +    +I    K  R+ +  ++F + +  GVKPD
Sbjct: 344 KAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKPD 395



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/314 (22%), Positives = 141/314 (44%), Gaps = 46/314 (14%)

Query: 239 DEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWK--PDPIAFS 296
           ++A   F+ + + G+ PD  +Y+ +L+      + +E L L       G    PD +++S
Sbjct: 34  EDARHVFDELLRRGI-PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYS 92

Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356
            +   F + GD D       +M    + PN+V YN+++ A+ KA     A  +   MV+S
Sbjct: 93  TVINGFFKEGDLD-------KMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKS 145

Query: 357 GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEA 416
           G+ PD  T  +++  +  +   K+A+   ++MR +    D + YN+L++     G   EA
Sbjct: 146 GVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEA 205

Query: 417 ERLFE----------------------------------DMKLSDYCKPDNYSYTAMLNI 442
            ++F+                                  D+ + +   P++Y ++ ++  
Sbjct: 206 RKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCA 265

Query: 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           Y     V+ A+ +F +M + G+  N +    +I  L K+ R++D +  F   ID G++PD
Sbjct: 266 YAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPD 325

Query: 503 DRLCGCLLSVVSLC 516
             +   L+   SLC
Sbjct: 326 SIVYNSLIH--SLC 337



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 114/236 (48%), Gaps = 15/236 (6%)

Query: 206 IEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
           +  L + MV N I  ++  +S ++    +    +EA+  F +M + GL P+ VTY  ++D
Sbjct: 240 MHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVID 299

Query: 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325
           V  KSG+VE+ +  +E+ +  G +PD I ++ L         ++    +  EM   G+  
Sbjct: 300 VLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICL 359

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
           + + +N+++++  K G+   +  LFD MV  G+ PD  TL       G+   AKD   L+
Sbjct: 360 STIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKPDIITL-------GRNDEAKD---LF 409

Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
                N    ++  Y  +       GL+EE ++LF  M+  + C  D    + MLN
Sbjct: 410 VAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSME-DNGCTVD----SGMLN 460


>gi|255661150|gb|ACU25744.1| pentatricopeptide repeat-containing protein [Verbena montevidensis]
 gi|255661152|gb|ACU25745.1| pentatricopeptide repeat-containing protein [Verbena litoralis]
          Length = 426

 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 88/283 (31%), Positives = 146/283 (51%), Gaps = 7/283 (2%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D  TYST+IT   +  LFD A+ W ++M +  +  D V YS ++++  K     + +S++
Sbjct: 8   DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
            R   SG+ PD +A++ +  +FG++  +   R ++ EMK+ GV P+   Y+TLL    + 
Sbjct: 68  SRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVTPDTASYSTLLTMYVEN 127

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
            K   A S+F EM E     D  T   +I +YG+   AK+A +L+  MR+     + + Y
Sbjct: 128 KKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSY 187

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           NTLL +  D  L  EA  LF  M+  +  + +  +Y +M+ IYG     + A  L +EM 
Sbjct: 188 NTLLRVYGDAELFGEAIHLFRLMQRKN-IEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 246

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVF------GVSIDR 497
             G+  N +  + +I   GK  ++D    +F      GV ID+
Sbjct: 247 NRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQ 289



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 83/367 (22%), Positives = 169/367 (46%), Gaps = 6/367 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K     P + + YN  +      + F+    L +EM +  +  D  +YS
Sbjct: 60  YSKAISIFSRLKRSGFTP-DLVAYNAMINVFGKAKLFREARSLISEMKTAGVTPDTASYS 118

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY + G  +E   L+      
Sbjct: 119 TLLTMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 178

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   ++ N+V YN+++   GK  +   A
Sbjct: 179 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKA 238

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R +   +D +LY T++  
Sbjct: 239 NNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVA 298

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K     +PDN      ++I    G ++ A  +F +  + G   
Sbjct: 299 YERAGLVAHAKRLLHELK-----RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVK 353

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           ++     +I    K ++  ++V VF      G  PD  +   +L+        +    V 
Sbjct: 354 DITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVY 413

Query: 527 TCLQQAN 533
             +Q+  
Sbjct: 414 MEMQEVG 420



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 138/271 (50%), Gaps = 1/271 (0%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
            +M  + +  D + YS +I  +++   + +AI  F R+ ++G  PD V Y+A+++V+ K+
Sbjct: 33  QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKA 92

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
               E  SL      +G  PD  ++S L  M+ E+  +     +  EM+ +    +L   
Sbjct: 93  KLFREARSLISEMKTAGVTPDTASYSTLLTMYVENKKFLEALSIFAEMREIKCLLDLTTC 152

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
           N +++  G+ G    A  LF  M + G+ P+  +   L+++YG A    +A+ L+  M+ 
Sbjct: 153 NIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR 212

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
                + + YN+++ +       E+A  L ++M+ +   +P++ +Y+ +++I+G  G +D
Sbjct: 213 KNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ-NRGIEPNSITYSTIISIWGKVGKLD 271

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
            A  LF+++   GV I+ +    +I    +A
Sbjct: 272 RAAMLFQKLRSSGVDIDQVLYQTMIVAYERA 302



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 125/261 (47%), Gaps = 1/261 (0%)

Query: 252 GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGI 311
            L PD  TYS ++  + K G  +  LS  ++        D + +S L ++  +  DY   
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 312 RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371
             +   +K  G  P+LV YN ++   GKA     ARSL  EM  +G+TPD  + + L+ +
Sbjct: 64  ISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVTPDTASYSTLLTM 123

Query: 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
           Y + +   +AL ++  MRE K  +D    N ++++   +G+ +EA++LF  M+     +P
Sbjct: 124 YVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG-IEP 182

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           +  SY  +L +YG       AI LF  M    +  NV+    ++   GK    +    + 
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 242

Query: 492 GVSIDRGVKPDDRLCGCLLSV 512
               +RG++P+      ++S+
Sbjct: 243 QEMQNRGIEPNSITYSTIISI 263



 Score = 69.7 bits (169), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 96/244 (39%), Gaps = 36/244 (14%)

Query: 290 PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSL 349
           PD   +S L   FG+ G +D     LQ+M+   V  +LV+Y+ L+E   K      A S+
Sbjct: 7   PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66

Query: 350 FDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCAD 409
           F  +  SG TP                                   D + YN ++N+   
Sbjct: 67  FSRLKRSGFTP-----------------------------------DLVAYNAMINVFGK 91

Query: 410 IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVM 469
             L  EA  L  +MK +    PD  SY+ +L +Y        A+ +F EM E+   +++ 
Sbjct: 92  AKLFREARSLISEMKTAG-VTPDTASYSTLLTMYVENKKFLEALSIFAEMREIKCLLDLT 150

Query: 470 GCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCL 529
            C  +I   G+     +  ++F      G++P+      LL V    E   +   +   +
Sbjct: 151 TCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLM 210

Query: 530 QQAN 533
           Q+ N
Sbjct: 211 QRKN 214



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/242 (21%), Positives = 105/242 (43%), Gaps = 5/242 (2%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           P+  +    L +    + + ++   F  ++ +N+     + YN  M       + +    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNI-EQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  EM +  IE ++ITYSTII+   +    D A   F+++  +G+  D+V Y  ++  Y 
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYE 300

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           ++G V       +R +    +PD I   +   +   +G  +   +V ++    G   ++ 
Sbjct: 301 RAGLVAHA----KRLLHELKRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDIT 356

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
           V+  ++    K  K G    +FD+M   G  PD   +  ++  YGK      A +++  M
Sbjct: 357 VFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVYMEM 416

Query: 389 RE 390
           +E
Sbjct: 417 QE 418



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/191 (22%), Positives = 87/191 (45%), Gaps = 3/191 (1%)

Query: 355 ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
           E  L+PD  T + LI  +GK      AL   ++M +++ P D +LY+ L+ +   +    
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
           +A  +F  +K S +  PD  +Y AM+N++G       A  L  EM   GV  +    + L
Sbjct: 62  KAISIFSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMKTAGVTPDTASYSTL 120

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN- 533
           +    + ++  + + +F    +     D   C  ++ V      +++  K+   +++   
Sbjct: 121 LTMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180

Query: 534 -PKLVAFLNLI 543
            P +V++  L+
Sbjct: 181 EPNVVSYNTLL 191


>gi|18071401|gb|AAL58260.1|AC068923_2 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 627

 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 150/292 (51%), Gaps = 1/292 (0%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
           ++M+   I  + +TY++II    +    D+A+E    M K+G+MPD +TY++I+  +  S
Sbjct: 105 DKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSS 164

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
           G+ +E +   ++  + G +PD + ++ L     ++G     R +   M   G++P++  Y
Sbjct: 165 GQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTY 224

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
            TLL+     G       L D MV +G+ P+    + L+  Y K    ++A+ ++ +MR+
Sbjct: 225 GTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQ 284

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
                + + Y T++++    G VE+A   FE M + +  +PD+  Y ++++        +
Sbjct: 285 QGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQM-IDEGLRPDSIVYNSLIHSLCIFDKWE 343

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            A ELF EM + G+ ++ +    +I    K  R+ +  ++F + +  GVKPD
Sbjct: 344 KAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKPD 395



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 150/331 (45%), Gaps = 51/331 (15%)

Query: 190 YNVTMKSL----RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           YN+ +  L    R     +L+  +A++    +   D ++YST+I        F E     
Sbjct: 54  YNILLNGLCDENRSQEALELLHIMADD--GGDCPPDVVSYSTVIN-----GFFKEG--DL 104

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           ++M    + P+ VTY++I+    K+  V++ + +    V SG  PD + ++ +   F  S
Sbjct: 105 DKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSS 164

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G        L++M+S GV+P++V YN+L++ + K G+   AR +FD M + GL PD  T 
Sbjct: 165 GQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITT- 223

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
                                             Y TLL   A  G + E   L  D+ +
Sbjct: 224 ----------------------------------YGTLLQGYATKGALVEMHGLL-DLMV 248

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
            +   P++Y ++ ++  Y     V+ A+ +F +M + G+  N +    +I  L K+ R++
Sbjct: 249 RNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVE 308

Query: 486 DLVRVFGVSIDRGVKPDDRLCGCLLSVVSLC 516
           D +  F   ID G++PD  +   L+   SLC
Sbjct: 309 DAMLYFEQMIDEGLRPDSIVYNSLIH--SLC 337



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 134/286 (46%), Gaps = 28/286 (9%)

Query: 206 IEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
           +  L + MV N I  ++  +S ++    +    +EA+  F +M + GL P+ VTY  ++D
Sbjct: 240 MHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVID 299

Query: 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325
           V  KSG+VE+ +  +E+ +  G +PD I ++ L         ++    +  EM   G+  
Sbjct: 300 VLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICL 359

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR----WAKDA 381
           + + +N+++++  K G+   +  LFD MV  G+ PD  TL    +  G AR       + 
Sbjct: 360 STIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKPDIITLG---RFLGSARRDYSLFVNI 416

Query: 382 LELWERM-----RENKWPMD--------------FI-LYNTLLNMCADIGLVEEAERLFE 421
             ++  M     +E + P++              F+  YN +L+      L ++A R+F+
Sbjct: 417 YFIFTNMSNTGDKEKETPVNTNGGNTASNSSGGPFLGTYNIILHGLCKNKLTDDALRMFQ 476

Query: 422 DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
           ++ L D  K +  ++  M++     G  D A +LF   S  G+  N
Sbjct: 477 NLCLMDL-KLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPN 521



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 69/301 (22%), Positives = 122/301 (40%), Gaps = 39/301 (12%)

Query: 168 QKSYFFFNWIKSQNLFPMETIF---YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNIT 224
           +++   F+ ++ Q L P    +    +V  KS R        EQ    M+   +  D+I 
Sbjct: 273 EEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQ----MIDEGLRPDSIV 328

Query: 225 YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
           Y+++I      + +++A E F  M   G+    + +++I+D + K G+V E   L++  V
Sbjct: 329 YNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESGKLFDLMV 388

Query: 285 ASGWKPDPIAFSVLGKMFGESG-DYD---GIRYVLQEMKSLGVQ---------------- 324
             G KPD I    LG+  G +  DY     I ++   M + G +                
Sbjct: 389 RIGVKPDIIT---LGRFLGSARRDYSLFVNIYFIFTNMSNTGDKEKETPVNTNGGNTASN 445

Query: 325 ----PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380
               P L  YN +L  + K      A  +F  +    L  + +T   +I    K     +
Sbjct: 446 SSGGPFLGTYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFNIMIDALLKVGRNDE 505

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
           A +L+     N    ++  Y  +       GL+EE ++LF  M+  + C  D    + ML
Sbjct: 506 AKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSME-DNGCTVD----SGML 560

Query: 441 N 441
           N
Sbjct: 561 N 561



 Score = 41.6 bits (96), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 56/278 (20%), Positives = 121/278 (43%), Gaps = 24/278 (8%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           P+  T    + +L      + +  +F  +  + L P ++I YN  + SL    +++  E+
Sbjct: 289 PNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRP-DSIVYNSLIHSLCIFDKWEKAEE 347

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVT--------- 259
           L  EM+   I L  I +++II    +     E+ + F+ M + G+ PD +T         
Sbjct: 348 LFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKPDIITLGRFLGSAR 407

Query: 260 --YSAILDVY------AKSGKVEEVLSLYERG--VASGWKPDPI--AFSVLGKMFGESGD 307
             YS  +++Y      + +G  E+   +   G   AS     P    ++++     ++  
Sbjct: 408 RDYSLFVNIYFIFTNMSNTGDKEKETPVNTNGGNTASNSSGGPFLGTYNIILHGLCKNKL 467

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
            D    + Q +  + ++     +N +++A+ K G+   A+ LF     +GL P+  T   
Sbjct: 468 TDDALRMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRL 527

Query: 368 LIK-IYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
           + + I G+    ++  +L+  M +N   +D  + N ++
Sbjct: 528 MAENIIGQG-LLEELDQLFLSMEDNGCTVDSGMLNFIV 564


>gi|255661176|gb|ACU25757.1| pentatricopeptide repeat-containing protein [Mulguraea
           asparagoides]
          Length = 426

 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 88/290 (30%), Positives = 147/290 (50%), Gaps = 1/290 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D  TYST+IT   +  LFD A+ W ++M +  +  D V YS ++++  K     + +S++
Sbjct: 8   DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
            R   SG+ PD +A++ +  +FG +  +   R ++ EM++ GV PN   Y+TLL    + 
Sbjct: 68  SRLKRSGFMPDLVAYNAMINVFGXAKLFREARSLISEMRTAGVMPNTASYSTLLTMYVEN 127

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
            K   A S+F EM E     D  T   +I +YG+   AK+A +L+  MR+     + + Y
Sbjct: 128 KKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSY 187

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           NTLL +  D  L  EA  LF  M+  +  + +  +Y +M+ IYG     + A  L +EM 
Sbjct: 188 NTLLRVYGDAELFGEAIHLFRLMQRKN-IEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 246

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
             G+  N +  + +I   GK  ++D    +F      GV+ D  L   ++
Sbjct: 247 HRGIEPNSITYSTIISIWGKVGKLDRAAVLFQKLRSSGVEIDQVLYQTMI 296



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 82/367 (22%), Positives = 169/367 (46%), Gaps = 6/367 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K     P + + YN  +      + F+    L +EM +  +  +  +YS
Sbjct: 60  YSKAISIFSRLKRSGFMP-DLVAYNAMINVFGXAKLFREARSLISEMRTAGVMPNTASYS 118

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY + G  +E   L+      
Sbjct: 119 TLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 178

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   ++ N+V YN+++   GK  +   A
Sbjct: 179 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKA 238

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R +   +D +LY T++  
Sbjct: 239 NNLIQEMQHRGIEPNSITYSTIISIWGKVGKLDRAAVLFQKLRSSGVEIDQVLYQTMIVA 298

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K     +PDN      ++I    G ++ A  +F +  + G   
Sbjct: 299 YERAGLVAHAKRLLHELK-----RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVK 353

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           ++     +I    K ++  ++V VF      G  PD  +   +L+        +    V 
Sbjct: 354 DITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVY 413

Query: 527 TCLQQAN 533
             +Q+  
Sbjct: 414 MEMQEVG 420



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 137/271 (50%), Gaps = 1/271 (0%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
            +M  + +  D + YS +I  +++   + +AI  F R+ ++G MPD V Y+A+++V+  +
Sbjct: 33  QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFMPDLVAYNAMINVFGXA 92

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
               E  SL      +G  P+  ++S L  M+ E+  +     V  EM+ +    +L   
Sbjct: 93  KLFREARSLISEMRTAGVMPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTC 152

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
           N +++  G+ G    A  LF  M + G+ P+  +   L+++YG A    +A+ L+  M+ 
Sbjct: 153 NIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR 212

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
                + + YN+++ +       E+A  L ++M+     +P++ +Y+ +++I+G  G +D
Sbjct: 213 KNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQHRG-IEPNSITYSTIISIWGKVGKLD 271

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
            A  LF+++   GV I+ +    +I    +A
Sbjct: 272 RAAVLFQKLRSSGVEIDQVLYQTMIVAYERA 302



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 122/261 (46%), Gaps = 1/261 (0%)

Query: 252 GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGI 311
            L PD  TYS ++  + K G  +  LS  ++        D + +S L ++  +  DY   
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 312 RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371
             +   +K  G  P+LV YN ++   G A     ARSL  EM  +G+ P+  + + L+ +
Sbjct: 64  ISIFSRLKRSGFMPDLVAYNAMINVFGXAKLFREARSLISEMRTAGVMPNTASYSTLLTM 123

Query: 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
           Y + +   +AL ++  MRE K  +D    N ++++   +G+ +EA++LF  M+     +P
Sbjct: 124 YVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG-IEP 182

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           +  SY  +L +YG       AI LF  M    +  NV+    ++   GK    +    + 
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 242

Query: 492 GVSIDRGVKPDDRLCGCLLSV 512
                RG++P+      ++S+
Sbjct: 243 QEMQHRGIEPNSITYSTIISI 263



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/242 (21%), Positives = 104/242 (42%), Gaps = 5/242 (2%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           P+  +    L +    + + ++   F  ++ +N+     + YN  M       + +    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNI-EQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  EM    IE ++ITYSTII+   +    D A   F+++  +G+  D+V Y  ++  Y 
Sbjct: 241 LIQEMQHRGIEPNSITYSTIISIWGKVGKLDRAAVLFQKLRSSGVEIDQVLYQTMIVAYE 300

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           ++G V       +R +    +PD I   +   +   +G  +   +V ++    G   ++ 
Sbjct: 301 RAGLVAHA----KRLLHELKRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDIT 356

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
           V+  ++    K  K G    +FD+M   G  PD   +  ++  YGK      A +++  M
Sbjct: 357 VFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVYMEM 416

Query: 389 RE 390
           +E
Sbjct: 417 QE 418



 Score = 62.4 bits (150), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 87/191 (45%), Gaps = 3/191 (1%)

Query: 355 ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
           E  L+PD  T + LI  +GK      AL   ++M +++ P D +LY+ L+ +   +    
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
           +A  +F  +K S +  PD  +Y AM+N++G       A  L  EM   GV  N    + L
Sbjct: 62  KAISIFSRLKRSGFM-PDLVAYNAMINVFGXAKLFREARSLISEMRTAGVMPNTASYSTL 120

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN- 533
           +    + ++  + + VF    +     D   C  ++ V      +++  K+   +++   
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180

Query: 534 -PKLVAFLNLI 543
            P +V++  L+
Sbjct: 181 EPNVVSYNTLL 191


>gi|414872432|tpg|DAA50989.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
          Length = 604

 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 98/357 (27%), Positives = 163/357 (45%), Gaps = 19/357 (5%)

Query: 136 NTEEAFLRAITEIPHQPTRENALLILNSLKFWQKS------YFFFNWIKSQNLFPMETIF 189
           N     L    E+ HQ  R +       ++   K+      Y FF  ++ +   P +T+F
Sbjct: 246 NDAHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRP-DTVF 304

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFD------EAIE 243
            N  +  L    +     +L  EM +       +TY+TII       LF+      E   
Sbjct: 305 MNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKA-----LFESKSRASEVPS 359

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
           WFERM ++G+ P   TYS ++D + K+ ++E+ + L E     G+ P P A+  L    G
Sbjct: 360 WFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALG 419

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
           ++  YD    + QE+K      +  VY  +++ +GKAG+   A ++FDEM + G  PD  
Sbjct: 420 KAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVY 479

Query: 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
              AL+    +     +AL    RM+E+    D   YN +LN  A  G    A  +  +M
Sbjct: 480 AYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNM 539

Query: 424 KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK 480
           K S   +PD  SY  +L      G  + A +L +EM+ LG   +++  + +++ +GK
Sbjct: 540 KQST-VRPDVVSYNTVLGALSHAGMFEEASKLMKEMNTLGFEYDLITYSSILEAIGK 595



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 93/358 (25%), Positives = 163/358 (45%), Gaps = 4/358 (1%)

Query: 156 NALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEM-V 214
           + + +L + K  +++   F  IK++   P+    YN  +  L    Q++ + QL NEM  
Sbjct: 131 DVVRMLGNAKMVRQAITIFYQIKTRKCQPIAQA-YNSMIIMLMHEGQYEKVHQLYNEMST 189

Query: 215 SNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVE 274
                 D +TYS +I+   +    D AI+    M + G+ P    Y+ ++ ++ K     
Sbjct: 190 EGHCFPDTVTYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAH 249

Query: 275 EVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLL 334
             LSL+E       +PD   ++ L +  G++G  D   +   EM+  G +P+ V  N ++
Sbjct: 250 GALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMI 309

Query: 335 EAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW-ERMRENKW 393
             +GKAG+   A  LF EM      P   T   +IK   +++     +  W ERM+E+  
Sbjct: 310 NFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGI 369

Query: 394 PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAI 453
                 Y+ L++       +E+A  L E+M    +  P   +Y ++++  G     D A 
Sbjct: 370 SPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGF-PPCPAAYCSLIDALGKAKRYDLAC 428

Query: 454 ELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
           ELF+E+ E   + +      +I+ LGKA R+DD + +F      G  PD      L+S
Sbjct: 429 ELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMS 486



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 88/340 (25%), Positives = 166/340 (48%), Gaps = 8/340 (2%)

Query: 167 WQKSYFFFNWIKSQ-NLFPMETIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNIT 224
           ++K +  +N + ++ + FP +T+ Y+  + +  + GR+   I QL NEM    ++     
Sbjct: 177 YEKVHQLYNEMSTEGHCFP-DTVTYSALISAFCKLGRRDSAI-QLLNEMKEIGMQPTTKI 234

Query: 225 YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
           Y+ +I    + N    A+  FE M      PD  TY+ ++    K+G+++E    +    
Sbjct: 235 YTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQ 294

Query: 285 ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA-GKP 343
             G +PD +  + +    G++G  D    + QEM++L   P++V YNT+++A+ ++  + 
Sbjct: 295 REGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRA 354

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
               S F+ M ESG++P   T + LI  + K    + A+ L E M E  +P     Y +L
Sbjct: 355 SEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSL 414

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYS-YTAMLNIYGSGGNVDNAIELFEEMSEL 462
           ++        + A  LF+++K  + C   +   Y  M+   G  G +D+AI +F+EM++L
Sbjct: 415 IDALGKAKRYDLACELFQELK--ENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKL 472

Query: 463 GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           G A +V     L+  L +   +D+ +       + G  PD
Sbjct: 473 GCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPD 512



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 85/357 (23%), Positives = 148/357 (41%), Gaps = 39/357 (10%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEI------ELDNIT-- 224
           FF W   +  +  +T  Y   +  L    Q+  + ++  EMV N I      EL ++   
Sbjct: 76  FFRWAAKRRNYEHDTSTYMALIHCLEVVEQYGEMWKMIQEMVRNPICVVTPTELSDVVRM 135

Query: 225 ----------------------------YSTIITCAKRCNLFDEAIEWFERMYKTG-LMP 255
                                       Y+++I        +++  + +  M   G   P
Sbjct: 136 LGNAKMVRQAITIFYQIKTRKCQPIAQAYNSMIIMLMHEGQYEKVHQLYNEMSTEGHCFP 195

Query: 256 DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVL 315
           D VTYSA++  + K G+ +  + L       G +P    +++L  +F +  D  G   + 
Sbjct: 196 DTVTYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSLF 255

Query: 316 QEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA 375
           +EM+    +P++  Y  L+  +GKAG+   A   F EM   G  PD   +  +I   GKA
Sbjct: 256 EEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKA 315

Query: 376 RWAKDALELWERMRENKWPMDFILYNTLLN-MCADIGLVEEAERLFEDMKLSDYCKPDNY 434
               DA++L++ M   +     + YNT++  +        E    FE MK S    P ++
Sbjct: 316 GRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESG-ISPSSF 374

Query: 435 SYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           +Y+ +++ +     ++ A+ L EEM E G          LI  LGKA+R D    +F
Sbjct: 375 TYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELF 431



 Score =  103 bits (256), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 88/345 (25%), Positives = 149/345 (43%), Gaps = 6/345 (1%)

Query: 141 FLRAITEIPHQPTRE-NALLILNSLKF--WQKSYFFFNWIKSQNLFPMETIFYNVTMKSL 197
            L  + EI  QPT +   +LI    KF     +   F  ++ Q   P +   Y   ++ L
Sbjct: 219 LLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCRP-DVFTYTELIRGL 277

Query: 198 RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDE 257
               +         EM       D +  + +I    +    D+A++ F+ M     +P  
Sbjct: 278 GKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSV 337

Query: 258 VTYSAILD-VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQ 316
           VTY+ I+  ++    +  EV S +ER   SG  P    +S+L   F ++   +    +L+
Sbjct: 338 VTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLE 397

Query: 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
           EM   G  P    Y +L++A+GKA +  LA  LF E+ E+  +   +    +IK  GKA 
Sbjct: 398 EMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAG 457

Query: 377 WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY 436
              DA+ +++ M +     D   YN L++  A  G+++EA      M+    C PD  SY
Sbjct: 458 RLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQ-EHGCIPDINSY 516

Query: 437 TAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
             +LN     G    A+E+   M +  V  +V+    ++  L  A
Sbjct: 517 NIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHA 561



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/255 (21%), Positives = 111/255 (43%), Gaps = 42/255 (16%)

Query: 330 YNTLLEAMGKAGKPGLARSLFDEMVESGL---TPDEKTLTALIKIYGKARWAKDALELWE 386
           Y  L+  +    + G    +  EMV + +   TP E  L+ ++++ G A+  + A+ ++ 
Sbjct: 93  YMALIHCLEVVEQYGEMWKMIQEMVRNPICVVTPTE--LSDVVRMLGNAKMVRQAITIFY 150

Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
           +++  K       YN+++ M    G  E+  +L+ +M    +C PD  +Y+A+++ +   
Sbjct: 151 QIKTRKCQPIAQAYNSMIIMLMHEGQYEKVHQLYNEMSTEGHCFPDTVTYSALISAFCKL 210

Query: 447 GNVDNAIELFEEMSELG-----------VAI------------------------NVMGC 471
           G  D+AI+L  EM E+G           +A+                        +V   
Sbjct: 211 GRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTY 270

Query: 472 TCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQ- 530
           T LI+ LGKA RID+    F      G +PD      +++ +      +D  K+   ++ 
Sbjct: 271 TELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMET 330

Query: 531 -QANPKLVAFLNLIE 544
            +  P +V +  +I+
Sbjct: 331 LRCIPSVVTYNTIIK 345


>gi|449453081|ref|XP_004144287.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Cucumis sativus]
 gi|449489420|ref|XP_004158306.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Cucumis sativus]
          Length = 720

 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 78/269 (28%), Positives = 140/269 (52%), Gaps = 8/269 (2%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLA---NEMVSNEIELDNI 223
           WQK++     +K+ N+ P +  FYNV + +  FG+ F  ++      + M+S  IE D +
Sbjct: 437 WQKTFEVLREMKNSNVKP-DRHFYNVMIDT--FGK-FNCLDHAMETYDRMLSEGIEPDVV 492

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           T++T+I C ++    D A E FE M + G +P   TY+ +++   +  K +EV  L  + 
Sbjct: 493 TWNTLIDCHRKHGYHDRAAELFEEMQERGYLPCPTTYNIMINSLGEQEKWDEVKILLGKM 552

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
            + G  P+ + ++ L  ++G SG ++     L+ MKS G++P+  +YN L+ A  + G  
Sbjct: 553 QSQGLLPNVVTYTTLVDIYGHSGRFNDAIDCLEAMKSAGLKPSATMYNALINAFAQRGLS 612

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
             A + +  M+  GL P    L +LI  +G+ R   +A  + + M+EN    D + Y TL
Sbjct: 613 EQAVNAYRVMISDGLRPSLLALNSLINAFGEDRRDIEAFSILQYMKENDVKPDVVTYTTL 672

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPD 432
           +     +   ++   ++E+M LS  C PD
Sbjct: 673 MKALIRVDKFDKVPAVYEEMILSG-CTPD 700



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 151/333 (45%), Gaps = 2/333 (0%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           ++ +F + +++  L P  + F  V       GR  +  E +  EM    ++     ++ +
Sbjct: 299 RALYFLSMVQASGLNPKTSTFVAVISALGNHGRT-EEAEAIFEEMKEGGLKPRIKAFNAL 357

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
           +    R     EA      M K+GL PDE TY  ++D YA  G+ E    L ++  A   
Sbjct: 358 LKGYARKGSLKEAESIISEMEKSGLSPDEHTYGLLVDAYANVGRWESARHLLKQMEARNV 417

Query: 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348
           +P+   FS +   + + G++     VL+EMK+  V+P+   YN +++  GK      A  
Sbjct: 418 QPNTFIFSRILASYRDRGEWQKTFEVLREMKNSNVKPDRHFYNVMIDTFGKFNCLDHAME 477

Query: 349 LFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCA 408
            +D M+  G+ PD  T   LI  + K  +   A EL+E M+E  +      YN ++N   
Sbjct: 478 TYDRMLSEGIEPDVVTWNTLIDCHRKHGYHDRAAELFEEMQERGYLPCPTTYNIMINSLG 537

Query: 409 DIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINV 468
           +    +E + L   M+ S    P+  +YT +++IYG  G  ++AI+  E M   G+  + 
Sbjct: 538 EQEKWDEVKILLGKMQ-SQGLLPNVVTYTTLVDIYGHSGRFNDAIDCLEAMKSAGLKPSA 596

Query: 469 MGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
                LI    +    +  V  + V I  G++P
Sbjct: 597 TMYNALINAFAQRGLSEQAVNAYRVMISDGLRP 629



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 115/477 (24%), Positives = 199/477 (41%), Gaps = 50/477 (10%)

Query: 171 YFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIIT 230
           Y   +W++  NL     + Y++ + +L  GR  +L E     ++S +  L  +TY+ +I 
Sbjct: 163 YAVVSWLQRHNLCFSYELLYSILIHAL--GRSEKLYEAF---ILSQKQTLTPLTYNALIG 217

Query: 231 CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAI---------LDV--------------- 266
              R N  ++A+    RM + G   D + YS I         +D+               
Sbjct: 218 ACARNNDLEKALNLMSRMRQDGFQSDFINYSLIIQSLTRTNKIDIPLLQKLYEEIESDKI 277

Query: 267 -------------YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRY 313
                        +AK+G     L       ASG  P    F  +    G  G  +    
Sbjct: 278 ELDGLLLNDIILGFAKAGDPNRALYFLSMVQASGLNPKTSTFVAVISALGNHGRTEEAEA 337

Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYG 373
           + +EMK  G++P +  +N LL+   + G    A S+  EM +SGL+PDE T   L+  Y 
Sbjct: 338 IFEEMKEGGLKPRIKAFNALLKGYARKGSLKEAESIISEMEKSGLSPDEHTYGLLVDAYA 397

Query: 374 K-ARWAKDALELWERMR-ENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
              RW + A  L ++M   N  P  FI ++ +L    D G  ++   +  +MK S+  KP
Sbjct: 398 NVGRW-ESARHLLKQMEARNVQPNTFI-FSRILASYRDRGEWQKTFEVLREMKNSN-VKP 454

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           D + Y  M++ +G    +D+A+E ++ M   G+  +V+    LI C  K    D    +F
Sbjct: 455 DRHFYNVMIDTFGKFNCLDHAMETYDRMLSEGIEPDVVTWNTLIDCHRKHGYHDRAAELF 514

Query: 492 GVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAFLNLIE-DNST 548
               +RG  P       +++ +   E  ++V  ++  +Q     P +V +  L++    +
Sbjct: 515 EEMQERGYLPCPTTYNIMINSLGEQEKWDEVKILLGKMQSQGLLPNVVTYTTLVDIYGHS 574

Query: 549 GFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGL 605
           G  N   +    +K   +       N LI+    R L+E+A     +    GL P L
Sbjct: 575 GRFNDAIDCLEAMKSAGLKPSATMYNALINAFAQRGLSEQAVNAYRVMISDGLRPSL 631



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 97/404 (24%), Positives = 174/404 (43%), Gaps = 42/404 (10%)

Query: 180 QNLFPMETIFYNVTMKSLRFGRQFQ--LIEQLANEMVSNEIELDNI-------------- 223
           Q+ F  + I Y++ ++SL    +    L+++L  E+ S++IELD +              
Sbjct: 237 QDGFQSDFINYSLIIQSLTRTNKIDIPLLQKLYEEIESDKIELDGLLLNDIILGFAKAGD 296

Query: 224 ---------------------TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSA 262
                                T+  +I+        +EA   FE M + GL P    ++A
Sbjct: 297 PNRALYFLSMVQASGLNPKTSTFVAVISALGNHGRTEEAEAIFEEMKEGGLKPRIKAFNA 356

Query: 263 ILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG 322
           +L  YA+ G ++E  S+      SG  PD   + +L   +   G ++  R++L++M++  
Sbjct: 357 LLKGYARKGSLKEAESIISEMEKSGLSPDEHTYGLLVDAYANVGRWESARHLLKQMEARN 416

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382
           VQPN  +++ +L +    G+      +  EM  S + PD      +I  +GK      A+
Sbjct: 417 VQPNTFIFSRILASYRDRGEWQKTFEVLREMKNSNVKPDRHFYNVMIDTFGKFNCLDHAM 476

Query: 383 ELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNI 442
           E ++RM       D + +NTL++     G  + A  LFE+M+   Y  P   +Y  M+N 
Sbjct: 477 ETYDRMLSEGIEPDVVTWNTLIDCHRKHGYHDRAAELFEEMQERGYL-PCPTTYNIMINS 535

Query: 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            G     D    L  +M   G+  NV+  T L+   G + R +D +         G+KP 
Sbjct: 536 LGEQEKWDEVKILLGKMQSQGLLPNVVTYTTLVDIYGHSGRFNDAIDCLEAMKSAGLKPS 595

Query: 503 DRLCGCLLSVVS---LCETSEDVGKVITCLQQANPKLVAFLNLI 543
             +   L++  +   L E + +  +V+       P L+A  +LI
Sbjct: 596 ATMYNALINAFAQRGLSEQAVNAYRVMIS-DGLRPSLLALNSLI 638



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 81/316 (25%), Positives = 151/316 (47%), Gaps = 13/316 (4%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           W+ +      ++++N+ P   IF  + + S R   ++Q   ++  EM ++ ++ D   Y+
Sbjct: 402 WESARHLLKQMEARNVQPNTFIFSRI-LASYRDRGEWQKTFEVLREMKNSNVKPDRHFYN 460

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
            +I    + N  D A+E ++RM   G+ PD VT++ ++D + K G  +    L+E     
Sbjct: 461 VMIDTFGKFNCLDHAMETYDRMLSEGIEPDVVTWNTLIDCHRKHGYHDRAAELFEEMQER 520

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G+ P P  ++++    GE   +D ++ +L +M+S G+ PN+V Y TL++  G +G+   A
Sbjct: 521 GYLPCPTTYNIMINSLGEQEKWDEVKILLGKMQSQGLLPNVVTYTTLVDIYGHSGRFNDA 580

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
               + M  +GL P      ALI  + +   ++ A+  +  M  +      +  N+L+N 
Sbjct: 581 IDCLEAMKSAGLKPSATMYNALINAFAQRGLSEQAVNAYRVMISDGLRPSLLALNSLINA 640

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
             +     EA  + + MK +D  KPD  +YT ++         D    ++EEM       
Sbjct: 641 FGEDRRDIEAFSILQYMKEND-VKPDVVTYTTLMKALIRVDKFDKVPAVYEEMI------ 693

Query: 467 NVMGCTCLIQCLGKAR 482
            + GCT      GKAR
Sbjct: 694 -LSGCT----PDGKAR 704



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 73/306 (23%), Positives = 140/306 (45%), Gaps = 1/306 (0%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
            L  +M +  ++ +   +S I+   +    + +  E    M  + + PD   Y+ ++D +
Sbjct: 407 HLLKQMEARNVQPNTFIFSRILASYRDRGEWQKTFEVLREMKNSNVKPDRHFYNVMIDTF 466

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            K   ++  +  Y+R ++ G +PD + ++ L     + G +D    + +EM+  G  P  
Sbjct: 467 GKFNCLDHAMETYDRMLSEGIEPDVVTWNTLIDCHRKHGYHDRAAELFEEMQERGYLPCP 526

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
             YN ++ ++G+  K    + L  +M   GL P+  T T L+ IYG +    DA++  E 
Sbjct: 527 TTYNIMINSLGEQEKWDEVKILLGKMQSQGLLPNVVTYTTLVDIYGHSGRFNDAIDCLEA 586

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           M+         +YN L+N  A  GL E+A   +  M +SD  +P   +  +++N +G   
Sbjct: 587 MKSAGLKPSATMYNALINAFAQRGLSEQAVNAYRVM-ISDGLRPSLLALNSLINAFGEDR 645

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCG 507
               A  + + M E  V  +V+  T L++ L +  + D +  V+   I  G  PD +   
Sbjct: 646 RDIEAFSILQYMKENDVKPDVVTYTTLMKALIRVDKFDKVPAVYEEMILSGCTPDGKARA 705

Query: 508 CLLSVV 513
            L S +
Sbjct: 706 MLRSAL 711


>gi|297737955|emb|CBI27156.3| unnamed protein product [Vitis vinifera]
          Length = 625

 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 162/349 (46%), Gaps = 1/349 (0%)

Query: 183 FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
           FP   + YN  +  L  G   Q   ++   M  +  +    TY+ +I    + +    A+
Sbjct: 272 FPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTMLINLYGKASKSYMAL 331

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
           + F  M      P+  T++A+++ +A+ G  E+   ++E+   +G +PD  A++ L + +
Sbjct: 332 KVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAY 391

Query: 303 GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
             +G   G   +   M+ +G +P+   YN +++A G+AG    A+++F+ M   G+TP  
Sbjct: 392 SRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTM 451

Query: 363 KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED 422
           K+   L+  Y +A       E+  +M ++    D  + N++LN+   +G  E+ E +   
Sbjct: 452 KSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTA 511

Query: 423 MKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKAR 482
           M+   Y   D  +Y  ++NIYG  G      ELF  +    +  +V+  T  I    + +
Sbjct: 512 MEKGPY-PADISTYNILINIYGRAGFFARMEELFRSLPARNLIPDVVTWTSRIGAYSRRK 570

Query: 483 RIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ 531
           + +  + VF   ID G  PD      LLS  S  +  ++V  VI  + +
Sbjct: 571 QYNRCLEVFEEMIDAGCYPDGGTAKVLLSACSNGDQIQEVTTVIRTMHK 619



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 92/393 (23%), Positives = 176/393 (44%), Gaps = 10/393 (2%)

Query: 176 WIKSQNLFPMETIF---YNVTMKSLRFGRQFQLIEQLANEMV-SNEIELDNITYSTIITC 231
           W    +L P  T +    NV ++ LR  +Q+  I  +   ++  +    D I Y+ +I  
Sbjct: 157 WGSLDSLSPNHTTWDDIINVAVQ-LRLNKQWDAIVLICGWILYRSSFHPDVICYNLLIDA 215

Query: 232 AKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291
             + +L+ +A   +  + +   +P E TY+ +L  Y  SG +E+  +++      G+ P 
Sbjct: 216 YGQKSLYKKAESTYLELLEARCVPTEDTYALLLKAYCTSGLLEKAEAVFAEMRKYGFPPS 275

Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
            + ++       + GD      + + MK    QP+   Y  L+   GKA K  +A  +F 
Sbjct: 276 AVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTMLINLYGKASKSYMALKVFH 335

Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411
           EM      P+  T TAL+  + +    + A E++E+++E     D   YN L+   +  G
Sbjct: 336 EMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAG 395

Query: 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC 471
               A  +F  M+    C+PD  SY  M++ YG  G  ++A  +FE M  LG+   +   
Sbjct: 396 FPYGAAEIFSLMQHMG-CEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSH 454

Query: 472 TCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ 531
             L+    +A ++     +       G+KPD  +   +L++       E + +V+T +++
Sbjct: 455 MLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAMEK 514

Query: 532 A-NPKLVAFLNL---IEDNSTGFENIKEEFRNV 560
              P  ++  N+   I   +  F  ++E FR++
Sbjct: 515 GPYPADISTYNILINIYGRAGFFARMEELFRSL 547



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/339 (23%), Positives = 150/339 (44%), Gaps = 2/339 (0%)

Query: 165 KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNIT 224
           K W        WI  ++ F  + I YN+ + +      ++  E    E++         T
Sbjct: 184 KQWDAIVLICGWILYRSSFHPDVICYNLLIDAYGQKSLYKKAESTYLELLEARCVPTEDT 243

Query: 225 YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
           Y+ ++       L ++A   F  M K G  P  V Y+A +D   K G  ++ + ++ER  
Sbjct: 244 YALLLKAYCTSGLLEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMK 303

Query: 285 ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344
               +P    +++L  ++G++        V  EM+S   +PN+  +  L+ A  + G   
Sbjct: 304 RDRCQPSTATYTMLINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCE 363

Query: 345 LARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
            A  +F+++ E+GL PD     AL++ Y +A +   A E++  M+      D   YN ++
Sbjct: 364 KAEEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMV 423

Query: 405 NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
           +     GL E+A+ +FE MK      P   S+  +L+ Y   G V    E+  +M + G+
Sbjct: 424 DAYGRAGLHEDAQAVFEVMKRLG-ITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGI 482

Query: 465 AINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
             +      ++   G+  + + +  V   ++++G  P D
Sbjct: 483 KPDTFVLNSMLNLYGRLGQFEKMEEVL-TAMEKGPYPAD 520


>gi|15231338|ref|NP_187348.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75186627|sp|Q9M907.1|PP217_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g06920
 gi|6728999|gb|AAF26996.1|AC016827_7 hypothetical protein [Arabidopsis thaliana]
 gi|332640955|gb|AEE74476.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 147/293 (50%), Gaps = 4/293 (1%)

Query: 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
            DEA   FE M      PDE+T+ +++D   K G+V++   +YE+ + S  + + I ++ 
Sbjct: 428 LDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTS 487

Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
           L K F   G  +    + ++M +    P+L + NT ++ M KAG+P   R++F+E+    
Sbjct: 488 LIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARR 547

Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417
             PD ++ + LI    KA +A +  EL+  M+E    +D   YN +++     G V +A 
Sbjct: 548 FVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAY 607

Query: 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
           +L E+MK   + +P   +Y ++++       +D A  LFEE     + +NV+  + LI  
Sbjct: 608 QLLEEMKTKGF-EPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDG 666

Query: 478 LGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQ 530
            GK  RID+   +    + +G+ P+      LL  +     +E++ + + C Q
Sbjct: 667 FGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALV---KAEEINEALVCFQ 716



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 97/417 (23%), Positives = 186/417 (44%), Gaps = 48/417 (11%)

Query: 145 ITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQ 204
           ++ +  +P  E  + +L  LK   ++  +F W + +   P     YN  +  +   R F 
Sbjct: 56  LSALSFKPQPEFVIGVLRRLKDVNRAIEYFRWYERRTELPHCPESYNSLLLVMARCRNFD 115

Query: 205 LIEQLANEM-VSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAI 263
            ++Q+  EM V+      N     ++ C K  N   E  +  + M K    P    Y+ +
Sbjct: 116 ALDQILGEMSVAGFGPSVNTCIEMVLGCVK-ANKLREGYDVVQMMRKFKFRPAFSAYTTL 174

Query: 264 LDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGV 323
           +  ++     + +L+L+++    G++P    F+ L + F + G  D    +L EMKS  +
Sbjct: 175 IGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSL 234

Query: 324 QPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALE 383
             ++V+YN  +++ GK GK  +A   F E+  +GL PDE T T++I +  KA    +A+E
Sbjct: 235 DADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVE 294

Query: 384 LWERMREN-KWPMDF----------------------------------ILYNTLLNMCA 408
           ++E + +N + P  +                                  I YN +L    
Sbjct: 295 MFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLR 354

Query: 409 DIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINV 468
            +G V+EA ++FE+MK      P+  +Y  ++++    G +D A EL + M + G+  NV
Sbjct: 355 KMGKVDEALKVFEEMKKD--AAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNV 412

Query: 469 MGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKV 525
                ++  L K++++D+   +F     +   PD+         ++ C   + +GKV
Sbjct: 413 RTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDE---------ITFCSLIDGLGKV 460



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 142/313 (45%), Gaps = 2/313 (0%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           +K    F  IK++   P +   Y++ +  L          +L   M      LD   Y+ 
Sbjct: 534 EKGRAMFEEIKARRFVP-DARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNI 592

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           +I    +C   ++A +  E M   G  P  VTY +++D  AK  +++E   L+E   +  
Sbjct: 593 VIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKR 652

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
            + + + +S L   FG+ G  D    +L+E+   G+ PNL  +N+LL+A+ KA +   A 
Sbjct: 653 IELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEAL 712

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
             F  M E   TP++ T   LI    K R    A   W+ M++       I Y T+++  
Sbjct: 713 VCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGL 772

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
           A  G + EA  LF+  K ++   PD+  Y AM+    +G    +A  LFEE    G+ I+
Sbjct: 773 AKAGNIAEAGALFDRFK-ANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGLPIH 831

Query: 468 VMGCTCLIQCLGK 480
              C  L+  L K
Sbjct: 832 NKTCVVLLDTLHK 844



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 141/311 (45%), Gaps = 1/311 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D  +YS +I    +    +E  E F  M + G + D   Y+ ++D + K GKV +   L 
Sbjct: 551 DARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLL 610

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
           E     G++P  + +  +     +    D    + +E KS  ++ N+V+Y++L++  GK 
Sbjct: 611 EEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKV 670

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G+   A  + +E+++ GLTP+  T  +L+    KA    +AL  ++ M+E K   + + Y
Sbjct: 671 GRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTY 730

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
             L+N    +    +A   +++M+     KP   SYT M++     GN+  A  LF+   
Sbjct: 731 GILINGLCKVRKFNKAFVFWQEMQKQGM-KPSTISYTTMISGLAKAGNIAEAGALFDRFK 789

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSE 520
             G   +      +I+ L    R  D   +F  +  RG+   ++ C  LL  +   +  E
Sbjct: 790 ANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGLPIHNKTCVVLLDTLHKNDCLE 849

Query: 521 DVGKVITCLQQ 531
               V   L++
Sbjct: 850 QAAIVGAVLRE 860



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/224 (20%), Positives = 98/224 (43%), Gaps = 5/224 (2%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ--LANEMVSNEIELDNITYS 226
           ++Y  F   KS+ +  +  + Y+  +    FG+  ++ E   +  E++   +  +  T++
Sbjct: 640 EAYMLFEEAKSKRI-ELNVVIYSSLIDG--FGKVGRIDEAYLILEELMQKGLTPNLYTWN 696

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           +++    +    +EA+  F+ M +    P++VTY  +++   K  K  +    ++     
Sbjct: 697 SLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQ 756

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G KP  I+++ +     ++G+      +    K+ G  P+   YN ++E +    +   A
Sbjct: 757 GMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDA 816

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
            SLF+E    GL    KT   L+    K    + A  +   +RE
Sbjct: 817 FSLFEETRRRGLPIHNKTCVVLLDTLHKNDCLEQAAIVGAVLRE 860


>gi|224145304|ref|XP_002336216.1| predicted protein [Populus trichocarpa]
 gi|222832672|gb|EEE71149.1| predicted protein [Populus trichocarpa]
          Length = 616

 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 164/354 (46%), Gaps = 38/354 (10%)

Query: 185 METIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           +  + +N  +  L + G+  Q +E L ++MV+   + D  TY+TII    +      A  
Sbjct: 190 LTIVTFNTLINGLCKVGKFGQAVE-LFDDMVARGYQPDVHTYTTIINGLCKIGETVAAAG 248

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG---------------- 287
            F +M + G  PD VTYS I+D   K  +V E L ++    A G                
Sbjct: 249 LFRKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLC 308

Query: 288 ----WK---------------PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
               W+               P+ + FS+L  +F + G+    R VL+ M  +GV+PN+V
Sbjct: 309 NFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVV 368

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            Y++L+       +   AR LFD M+  G  PD  +   LI  Y KA+   +A +L+  M
Sbjct: 369 TYSSLMNGYSLQAEVVEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEM 428

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
                  D + YNTL++    +G + EA  LF++M L++   PD  +Y+ +L+ +   G 
Sbjct: 429 IHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNM-LTNGNLPDLCTYSILLDGFCKQGY 487

Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           +  A  LF  M    +  N++    LI  + K+R + +  ++F     +G++P+
Sbjct: 488 LAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPN 541



 Score =  115 bits (289), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 95/369 (25%), Positives = 181/369 (49%), Gaps = 11/369 (2%)

Query: 140 AFLRAITEIPHQPTRENALLILNSL---KFWQKSYFFFNWIKSQNLFPMETIF-YNVTMK 195
              R + E   QP       I++SL   +   ++   F+++K++ + P   IF YN  ++
Sbjct: 248 GLFRKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISP--NIFTYNSLIQ 305

Query: 196 SLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITC-AKRCNLFDEAIEWFERMYKTGLM 254
            L    +++    + NEM+S  I  + +T+S +I    K  N+F EA    + M + G+ 
Sbjct: 306 GLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVF-EARGVLKTMTEMGVE 364

Query: 255 PDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYV 314
           P+ VTYS++++ Y+   +V E   L++  +  G KPD  ++++L   + ++      + +
Sbjct: 365 PNVVTYSSLMNGYSLQAEVVEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQL 424

Query: 315 LQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK 374
             EM   G+ P++V YNTL++ + + G+   A  LF  M+ +G  PD  T + L+  + K
Sbjct: 425 FNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCK 484

Query: 375 ARWAKDALELWERMRENKWPMDFILYNTLLN-MCADIGLVEEAERLFEDMKLSDYCKPDN 433
             +   A  L+  M+      + ++YN L++ MC    L +EA +LF ++ +    +P+ 
Sbjct: 485 QGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNL-KEARKLFSELFVQGL-QPNV 542

Query: 434 YSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGV 493
             YT ++N     G +D A+E F  M E G   N      +I+   + +     V++ G 
Sbjct: 543 QIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGE 602

Query: 494 SIDRGVKPD 502
             ++G   D
Sbjct: 603 MREKGFVAD 611



 Score =  103 bits (257), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 102/408 (25%), Positives = 190/408 (46%), Gaps = 23/408 (5%)

Query: 214 VSNEIEL-----DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           +S ++EL     D  T   +I C  +    D       ++ K GL    VT++ +++   
Sbjct: 144 LSKQMELAGLSPDTYTLHMLINCFFQLQRVDLGFSVLAKIIKLGLQLTIVTFNTLINGLC 203

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           K GK  + + L++  VA G++PD   ++ +     + G+      + ++M   G QP++V
Sbjct: 204 KVGKFGQAVELFDDMVARGYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVV 263

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK-IYGKARWAKDALELWER 387
            Y+T+++++ K  +   A  +F  M   G++P+  T  +LI+ +   +RW + +  L E 
Sbjct: 264 TYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEM 323

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           M  N  P + + ++ L+N+    G V EA  + + M      +P+  +Y++++N Y    
Sbjct: 324 MSLNIMP-NIVTFSLLINIFCKEGNVFEARGVLKTMTEMG-VEPNVVTYSSLMNGYSLQA 381

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCG 507
            V  A +LF+ M   G   +V     LI    KA+RI +  ++F   I +G+ PD     
Sbjct: 382 EVVEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYN 441

Query: 508 CLLSVVSLCET-----SEDVGKVITCLQQAN-PKLVAFLNLIEDNSTGFENIKEEFR--N 559
            L+    LC+      + D+ K    L   N P L  + +++ D       + + FR   
Sbjct: 442 TLID--GLCQLGRLREAHDLFK--NMLTNGNLPDLCTY-SILLDGFCKQGYLAKAFRLFR 496

Query: 560 VIKDTEVDARRPFCNCLID-ICRNRNLNERAHELLYLGTLYGLYPGLH 606
            ++ T +       N LID +C++RNL E A +L     + GL P + 
Sbjct: 497 AMQSTYLKPNMVMYNILIDAMCKSRNLKE-ARKLFSELFVQGLQPNVQ 543



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 133/300 (44%), Gaps = 37/300 (12%)

Query: 239 DEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEE-VLSLYERGVASGWKPDPIAFSV 297
           D+A+ +F  M      P  + ++ +L    K     + V+SL ++   +G  PD     +
Sbjct: 103 DDALAYFNHMLHRKPRPCIIQFNKLLSAIVKMRHYHDAVISLSKQMELAGLSPDTYTLHM 162

Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
           L   F +    D    VL ++  LG+Q  +V +NTL+  + K GK G A  LFD+MV  G
Sbjct: 163 LINCFFQLQRVDLGFSVLAKIIKLGLQLTIVTFNTLINGLCKVGKFGQAVELFDDMVARG 222

Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN-MCADIGLVEEA 416
             PD  T T +I    K      A  L+ +M E     D + Y+T+++ +C D   V EA
Sbjct: 223 YQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSLCKD-RRVNEA 281

Query: 417 ERLFEDMK-----------------LSDYCK-----------------PDNYSYTAMLNI 442
             +F  MK                 L ++ +                 P+  +++ ++NI
Sbjct: 282 LDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINI 341

Query: 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           +   GNV  A  + + M+E+GV  NV+  + L+        + +  ++F V I +G KPD
Sbjct: 342 FCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFDVMITKGCKPD 401



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 78/193 (40%), Gaps = 3/193 (1%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITC 231
            FN +  Q L P + + YN  +  L + GR  +    L   M++N    D  TYS ++  
Sbjct: 424 LFNEMIHQGLTP-DIVSYNTLIDGLCQLGR-LREAHDLFKNMLTNGNLPDLCTYSILLDG 481

Query: 232 AKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291
             +     +A   F  M  T L P+ V Y+ ++D   KS  ++E   L+      G +P+
Sbjct: 482 FCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPN 541

Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
              ++ +     + G  D      + M+  G  PN   YN ++    +      A  L  
Sbjct: 542 VQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIG 601

Query: 352 EMVESGLTPDEKT 364
           EM E G   D  T
Sbjct: 602 EMREKGFVADVAT 614


>gi|225423724|ref|XP_002276864.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like [Vitis vinifera]
          Length = 587

 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 162/349 (46%), Gaps = 1/349 (0%)

Query: 183 FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
           FP   + YN  +  L  G   Q   ++   M  +  +    TY+ +I    + +    A+
Sbjct: 234 FPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTMLINLYGKASKSYMAL 293

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
           + F  M      P+  T++A+++ +A+ G  E+   ++E+   +G +PD  A++ L + +
Sbjct: 294 KVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAY 353

Query: 303 GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
             +G   G   +   M+ +G +P+   YN +++A G+AG    A+++F+ M   G+TP  
Sbjct: 354 SRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTM 413

Query: 363 KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED 422
           K+   L+  Y +A       E+  +M ++    D  + N++LN+   +G  E+ E +   
Sbjct: 414 KSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTA 473

Query: 423 MKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKAR 482
           M+   Y   D  +Y  ++NIYG  G      ELF  +    +  +V+  T  I    + +
Sbjct: 474 MEKGPY-PADISTYNILINIYGRAGFFARMEELFRSLPARNLIPDVVTWTSRIGAYSRRK 532

Query: 483 RIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ 531
           + +  + VF   ID G  PD      LLS  S  +  ++V  VI  + +
Sbjct: 533 QYNRCLEVFEEMIDAGCYPDGGTAKVLLSACSNGDQIQEVTTVIRTMHK 581



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 88/375 (23%), Positives = 170/375 (45%), Gaps = 7/375 (1%)

Query: 191 NVTMKSLRFGRQFQLIEQLANEMV-SNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           NV ++ LR  +Q+  I  +   ++  +    D I Y+ +I    + +L+ +A   +  + 
Sbjct: 137 NVAVQ-LRLNKQWDAIVLICGWILYRSSFHPDVICYNLLIDAYGQKSLYKKAESTYLELL 195

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
           +   +P E TY+ +L  Y  SG +E+  +++      G+ P  + ++       + GD  
Sbjct: 196 EARCVPTEDTYALLLKAYCTSGLLEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQ 255

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               + + MK    QP+   Y  L+   GKA K  +A  +F EM      P+  T TAL+
Sbjct: 256 KAVEIFERMKRDRCQPSTATYTMLINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALV 315

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
             + +    + A E++E+++E     D   YN L+   +  G    A  +F  M+    C
Sbjct: 316 NAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMG-C 374

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
           +PD  SY  M++ YG  G  ++A  +FE M  LG+   +     L+    +A ++     
Sbjct: 375 EPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEE 434

Query: 490 VFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQA-NPKLVAFLNL---IED 545
           +       G+KPD  +   +L++       E + +V+T +++   P  ++  N+   I  
Sbjct: 435 IVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIYG 494

Query: 546 NSTGFENIKEEFRNV 560
            +  F  ++E FR++
Sbjct: 495 RAGFFARMEELFRSL 509



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 153/348 (43%), Gaps = 2/348 (0%)

Query: 156 NALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVS 215
           N  + L   K W        WI  ++ F  + I YN+ + +      ++  E    E++ 
Sbjct: 137 NVAVQLRLNKQWDAIVLICGWILYRSSFHPDVICYNLLIDAYGQKSLYKKAESTYLELLE 196

Query: 216 NEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEE 275
                   TY+ ++       L ++A   F  M K G  P  V Y+A +D   K G  ++
Sbjct: 197 ARCVPTEDTYALLLKAYCTSGLLEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQK 256

Query: 276 VLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLE 335
            + ++ER      +P    +++L  ++G++        V  EM+S   +PN+  +  L+ 
Sbjct: 257 AVEIFERMKRDRCQPSTATYTMLINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVN 316

Query: 336 AMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPM 395
           A  + G    A  +F+++ E+GL PD     AL++ Y +A +   A E++  M+      
Sbjct: 317 AFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEP 376

Query: 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIEL 455
           D   YN +++     GL E+A+ +FE MK      P   S+  +L+ Y   G V    E+
Sbjct: 377 DRASYNIMVDAYGRAGLHEDAQAVFEVMKRLG-ITPTMKSHMLLLSAYSRAGKVAKCEEI 435

Query: 456 FEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
             +M + G+  +      ++   G+  + + +  V   ++++G  P D
Sbjct: 436 VNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVL-TAMEKGPYPAD 482


>gi|255661210|gb|ACU25774.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 426

 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 88/290 (30%), Positives = 147/290 (50%), Gaps = 1/290 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D  TYST+IT   +  LFD+A+ W ++M +  +  D V YS ++++  K     + +S++
Sbjct: 8   DRYTYSTLITHFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
            R   +G  PD +A++ +  +FG++  +   R ++ EM+  GV P+ V Y+TLL    + 
Sbjct: 68  SRLKRAGITPDLVAYNSMINVFGKAKLFREARSLISEMREAGVVPDTVSYSTLLTMYVEN 127

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
            K   A S+F EM E     D  T   +I +YG+   AK+A +L+  MR+     + + Y
Sbjct: 128 QKFLEALSVFAEMREIKCLVDLTTCNIMIDVYGQLDMAKEADKLFWSMRKVGIEPNVVSY 187

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           NTLL +  D  L  EA  LF  M+  D  + +  +Y  M+ IYG     + A  L +EM 
Sbjct: 188 NTLLRVYGDAELFGEAIHLFRLMQRKD-IEQNVVTYNTMMMIYGKTLEHEKANNLIQEMH 246

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
             G+  N +  + +I   GK  ++D    +F      GV+ D  L   ++
Sbjct: 247 NRGIEPNAITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDHVLYQTMI 296



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/345 (23%), Positives = 164/345 (47%), Gaps = 6/345 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K   + P + + YN  +      + F+    L +EM    +  D ++YS
Sbjct: 60  YSKAISIFSRLKRAGITP-DLVAYNSMINVFGKAKLFREARSLISEMREAGVVPDTVSYS 118

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY +    +E   L+      
Sbjct: 119 TLLTMYVENQKFLEALSVFAEMREIKCLVDLTTCNIMIDVYGQLDMAKEADKLFWSMRKV 178

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   ++ N+V YNT++   GK  +   A
Sbjct: 179 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKDIEQNVVTYNTMMMIYGKTLEHEKA 238

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R +   +D +LY T++  
Sbjct: 239 NNLIQEMHNRGIEPNAITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDHVLYQTMIVA 298

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K     +PDN      ++I    G ++ A  +F +  + G   
Sbjct: 299 YERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATWVFRQAIDAGEVK 353

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
           ++     +I    K ++  ++V VF      G  PD  +   +L+
Sbjct: 354 DITVFERMIDLFSKYKKYPNVVEVFEKMRGLGYFPDSNVISLVLN 398



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 143/286 (50%), Gaps = 3/286 (1%)

Query: 198 RFGRQFQLIEQLA--NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMP 255
            FG++    + L+   +M  + +  D + YS +I  +++   + +AI  F R+ + G+ P
Sbjct: 18  HFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRAGITP 77

Query: 256 DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVL 315
           D V Y+++++V+ K+    E  SL      +G  PD +++S L  M+ E+  +     V 
Sbjct: 78  DLVAYNSMINVFGKAKLFREARSLISEMREAGVVPDTVSYSTLLTMYVENQKFLEALSVF 137

Query: 316 QEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA 375
            EM+ +    +L   N +++  G+      A  LF  M + G+ P+  +   L+++YG A
Sbjct: 138 AEMREIKCLVDLTTCNIMIDVYGQLDMAKEADKLFWSMRKVGIEPNVVSYNTLLRVYGDA 197

Query: 376 RWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYS 435
               +A+ L+  M+      + + YNT++ +       E+A  L ++M  +   +P+  +
Sbjct: 198 ELFGEAIHLFRLMQRKDIEQNVVTYNTMMMIYGKTLEHEKANNLIQEMH-NRGIEPNAIT 256

Query: 436 YTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
           Y+ +++I+G  G +D A  LF+++   GV I+ +    +I    +A
Sbjct: 257 YSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDHVLYQTMIVAYERA 302



 Score =  107 bits (267), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 127/261 (48%), Gaps = 1/261 (0%)

Query: 252 GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGI 311
            L PD  TYS ++  + K G  ++ LS  ++        D + +S L ++  +  DY   
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 312 RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371
             +   +K  G+ P+LV YN+++   GKA     ARSL  EM E+G+ PD  + + L+ +
Sbjct: 64  ISIFSRLKRAGITPDLVAYNSMINVFGKAKLFREARSLISEMREAGVVPDTVSYSTLLTM 123

Query: 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
           Y + +   +AL ++  MRE K  +D    N ++++   + + +EA++LF  M+     +P
Sbjct: 124 YVENQKFLEALSVFAEMREIKCLVDLTTCNIMIDVYGQLDMAKEADKLFWSMRKVG-IEP 182

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           +  SY  +L +YG       AI LF  M    +  NV+    ++   GK    +    + 
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKDIEQNVVTYNTMMMIYGKTLEHEKANNLI 242

Query: 492 GVSIDRGVKPDDRLCGCLLSV 512
               +RG++P+      ++S+
Sbjct: 243 QEMHNRGIEPNAITYSTIISI 263



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 52/238 (21%), Positives = 110/238 (46%), Gaps = 31/238 (13%)

Query: 218 IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL 277
           IE + ++Y+T++       LF EAI  F  M +  +  + VTY+ ++ +Y K+ + E+  
Sbjct: 180 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKDIEQNVVTYNTMMMIYGKTLEHEKAN 239

Query: 278 SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
           +L +     G +P+ I +S +  ++G+ G  D    + Q+++S GV+ + V+Y T++ A 
Sbjct: 240 NLIQEMHNRGIEPNAITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDHVLYQTMIVAY 299

Query: 338 GKAGKPGLARSLFDEM-------------------------------VESGLTPDEKTLT 366
            +AG    A+ L  E+                               +++G   D     
Sbjct: 300 ERAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFE 359

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
            +I ++ K +   + +E++E+MR   +  D  + + +LN    +   + A  ++ DM+
Sbjct: 360 RMIDLFSKYKKYPNVVEVFEKMRGLGYFPDSNVISLVLNAYGKLHEFDXANDMYMDMQ 417



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 90/191 (47%), Gaps = 3/191 (1%)

Query: 355 ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
           E  L+PD  T + LI  +GK     DAL   ++M +++ P D +LY+ L+ +   +    
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
           +A  +F  +K +    PD  +Y +M+N++G       A  L  EM E GV  + +  + L
Sbjct: 62  KAISIFSRLKRAG-ITPDLVAYNSMINVFGKAKLFREARSLISEMREAGVVPDTVSYSTL 120

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN- 533
           +    + ++  + + VF    +     D   C  ++ V    + +++  K+   +++   
Sbjct: 121 LTMYVENQKFLEALSVFAEMREIKCLVDLTTCNIMIDVYGQLDMAKEADKLFWSMRKVGI 180

Query: 534 -PKLVAFLNLI 543
            P +V++  L+
Sbjct: 181 EPNVVSYNTLL 191



 Score = 59.7 bits (143), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 49/249 (19%), Positives = 106/249 (42%), Gaps = 5/249 (2%)

Query: 142 LRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGR 201
           +R +   P+  +    L +    + + ++   F  ++ +++     + YN  M       
Sbjct: 175 MRKVGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKDI-EQNVVTYNTMMMIYGKTL 233

Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS 261
           + +    L  EM +  IE + ITYSTII+   +    D A   F+++  +G+  D V Y 
Sbjct: 234 EHEKANNLIQEMHNRGIEPNAITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDHVLYQ 293

Query: 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
            ++  Y ++G V       +R +    +PD I       +   +G  +   +V ++    
Sbjct: 294 TMIVAYERAGLVAHA----KRLLHELKRPDNIPRDTAIHILAGAGRIEEATWVFRQAIDA 349

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
           G   ++ V+  +++   K  K      +F++M   G  PD   ++ ++  YGK      A
Sbjct: 350 GEVKDITVFERMIDLFSKYKKYPNVVEVFEKMRGLGYFPDSNVISLVLNAYGKLHEFDXA 409

Query: 382 LELWERMRE 390
            +++  M++
Sbjct: 410 NDMYMDMQD 418



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 71/149 (47%), Gaps = 4/149 (2%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  ++ S+ +E+D++ Y T+I   +R  L   A      + +    PD +     + + A
Sbjct: 276 LFQKLRSSGVEIDHVLYQTMIVAYERAGLVAHAKRLLHELKR----PDNIPRDTAIHILA 331

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
            +G++EE   ++ + + +G   D   F  +  +F +   Y  +  V ++M+ LG  P+  
Sbjct: 332 GAGRIEEATWVFRQAIDAGEVKDITVFERMIDLFSKYKKYPNVVEVFEKMRGLGYFPDSN 391

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESG 357
           V + +L A GK  +   A  ++ +M + G
Sbjct: 392 VISLVLNAYGKLHEFDXANDMYMDMQDEG 420


>gi|242073534|ref|XP_002446703.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
 gi|241937886|gb|EES11031.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
          Length = 802

 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 89/341 (26%), Positives = 161/341 (47%), Gaps = 23/341 (6%)

Query: 184 PMETIFYNVTMKSLRFGRQF------QLIEQLANEMVSNEIELDNITYSTIITCAKRCNL 237
           P   + YN+ + S+  G +        L E++  EM+++   L+ +  +    C      
Sbjct: 209 PPGYVAYNIFIGSICGGEELPSPDLLALAEKVYEEMLASSCVLNKVNTANFARCLCGMGK 268

Query: 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
           FD A +  + M   G +PD  TYS ++    ++ KVE+   L++   + G  PD   +++
Sbjct: 269 FDMAFQIIKVMMGKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVNPDVYTYTI 328

Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
           L   F ++G  +  R    EM+S+G   N+V Y  LL A  KA +   A  +F+ M+++G
Sbjct: 329 LIDSFCKAGLIEQARSWFDEMRSIGCSANVVTYTALLHAYLKAKQLPQASDIFNRMIDAG 388

Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERM--RENKWPMDF--------------ILYN 401
             P+  T +AL+    KA   + A E++ ++    +    DF              + Y 
Sbjct: 389 CPPNTITYSALVDGLCKAGEIQKACEVYTKLIGTSDNVGSDFYFEGKHTDSIAPNVVTYG 448

Query: 402 TLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461
            L++       V +A+ L + M LS+ C+P++  Y A+++ +   G +DNA E+F  MS+
Sbjct: 449 ALIDGLCKAHKVVDAQELLDAM-LSNGCEPNHIIYDALIDGFCKVGKIDNAQEVFLRMSK 507

Query: 462 LGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            G    V   T LI  + K RR+D  ++V    ++    P+
Sbjct: 508 CGYLPTVHTYTSLIDAMFKDRRLDLAMKVLSQMVESSCTPN 548



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 88/349 (25%), Positives = 158/349 (45%), Gaps = 17/349 (4%)

Query: 170 SYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTII 229
           S F+F    + ++ P   + Y   +  L    +    ++L + M+SN  E ++I Y  +I
Sbjct: 428 SDFYFEGKHTDSIAP-NVVTYGALIDGLCKAHKVVDAQELLDAMLSNGCEPNHIIYDALI 486

Query: 230 TCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWK 289
               +    D A E F RM K G +P   TY++++D   K  +++  + +  + V S   
Sbjct: 487 DGFCKVGKIDNAQEVFLRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAMKVLSQMVESSCT 546

Query: 290 PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSL 349
           P+ + ++ +       G+      +L  M+  G  PN+V Y  L++ +GK+GK  L+  L
Sbjct: 547 PNVVTYTAMIDGLCRIGECQKALKLLSMMEEKGCSPNVVTYTALIDGLGKSGKVDLSLQL 606

Query: 350 FDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN---- 405
           F +M   G  P+  T   LI     A    +A  L   M++  WP     Y +++     
Sbjct: 607 FIQMSTKGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYLQGYCSVVQGFSK 666

Query: 406 -MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
              A +GL+EE E        S    P    Y  +++ +   G ++ A+EL +EM EL  
Sbjct: 667 KFIASLGLLEELE--------SHGTVPIAPVYGLLIDNFSKAGRLEEALELHKEMMELSS 718

Query: 465 AINVMG---CTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
           ++N+      T LIQ L  A +++    ++     +GV P+  +  CL+
Sbjct: 719 SLNITSKDMYTSLIQALCLASQLEKAFELYSEITRKGVVPELSVFVCLI 767



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 132/292 (45%), Gaps = 7/292 (2%)

Query: 217 EIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV 276
           + +LD +  + +I+     +LFDEAI +  RM     +P+ VTY  +L  + K  ++   
Sbjct: 102 DFKLDTVLCTQMISGLMEASLFDEAISFLHRMRCNSCIPNVVTYRTLLTGFLKKKQLGWC 161

Query: 277 LSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA 336
             +    +  G  P+P  F+ L   +  + DY     +L+ M   G  P  V YN  + +
Sbjct: 162 KRIINMMMKEGCNPNPSLFNSLVHSYCNARDYPYAYKLLKRMADCGCPPGYVAYNIFIGS 221

Query: 337 M-GKAGKP-----GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
           + G    P      LA  +++EM+ S    ++       +          A ++ + M  
Sbjct: 222 ICGGEELPSPDLLALAEKVYEEMLASSCVLNKVNTANFARCLCGMGKFDMAFQIIKVMMG 281

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
             +  D   Y+ ++    +   VE+A  LF++MK S    PD Y+YT +++ +   G ++
Sbjct: 282 KGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMK-SVGVNPDVYTYTILIDSFCKAGLIE 340

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            A   F+EM  +G + NV+  T L+    KA+++     +F   ID G  P+
Sbjct: 341 QARSWFDEMRSIGCSANVVTYTALLHAYLKAKQLPQASDIFNRMIDAGCPPN 392



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 61/125 (48%), Gaps = 6/125 (4%)

Query: 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK-A 375
           E+K  G +P+   YN L++ +  AG+  +   +  EM ESG   D+ T+    +   K  
Sbjct: 30  ELKDFGYRPSGATYNALVQVLATAGQMDMGFRVQKEMSESGFCMDKFTVGCFAQALCKEG 89

Query: 376 RWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYS 435
           RW+ DAL + ER     + +D +L   +++   +  L +EA      M+ +  C P+  +
Sbjct: 90  RWS-DALVMIER---EDFKLDTVLCTQMISGLMEASLFDEAISFLHRMRCNS-CIPNVVT 144

Query: 436 YTAML 440
           Y  +L
Sbjct: 145 YRTLL 149


>gi|297823811|ref|XP_002879788.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325627|gb|EFH56047.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 867

 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 97/403 (24%), Positives = 190/403 (47%), Gaps = 46/403 (11%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           ++ +EMV   I +  I  +++IT     N   +A+++F RM + GL PD+V +S +++ +
Sbjct: 331 KVKDEMVGFGIPMSVIAATSLITGFCNGNELGKALDFFNRMEEEGLAPDKVMFSVMIEWF 390

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPI-----------------AFSVLGKMFG------- 303
            K+ ++E+ + +Y+R  + G  P  +                 A  +    F        
Sbjct: 391 CKNMEMEKAVEIYKRMKSVGIAPSSVLVHKMIQGCLKAESPEAALEIFNDSFETWIAHGF 450

Query: 304 ----------ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
                     + G  D     L+ M++ G++PN+V YN ++ A  +     LARS+F EM
Sbjct: 451 MCNKIFLLLCKQGKVDAATSFLRMMENKGIEPNVVFYNNMMLAHCRMKNMDLARSIFSEM 510

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
           +E GL P+  T + LI  + K +  ++A E+  +M  + +  + ++YNT++N    +G  
Sbjct: 511 LEKGLQPNNFTYSILIDGFFKNQDEQNAWEVINQMIASNFEANEVIYNTIINGLCKVGQT 570

Query: 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTC 473
            +A+ + +++           SY ++++ +   G+ D+A+E + EMSE G++ NV+  T 
Sbjct: 571 SKAKEMLQNLIKEKRYSMGCTSYNSIIDGFFKEGDTDSAVEAYREMSENGISPNVVTFTS 630

Query: 474 LIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN 533
           LI    K+ R+D  + +      + +K D    G L+     C+ ++        ++ A 
Sbjct: 631 LINGFCKSNRMDLALEMIHEMKSKDLKLDVPAYGALID--GFCKKND--------MKTAY 680

Query: 534 PKLVAFLNL-IEDNSTGFENIKEEFRNVIK-DTEVDARRPFCN 574
                 L L +  N + + N+   FRN+ K D  +D  +   N
Sbjct: 681 TLFSELLELGLMPNVSVYNNLISGFRNLGKMDAAIDLYKKMVN 723



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 137/299 (45%), Gaps = 3/299 (1%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYS 226
           Q ++   N + + N F    + YN  +  L + G+  +  E L N +      +   +Y+
Sbjct: 536 QNAWEVINQMIASN-FEANEVIYNTIINGLCKVGQTSKAKEMLQNLIKEKRYSMGCTSYN 594

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           +II    +    D A+E +  M + G+ P+ VT++++++ + KS +++  L +     + 
Sbjct: 595 SIIDGFFKEGDTDSAVEAYREMSENGISPNVVTFTSLINGFCKSNRMDLALEMIHEMKSK 654

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
             K D  A+  L   F +  D      +  E+  LG+ PN+ VYN L+      GK   A
Sbjct: 655 DLKLDVPAYGALIDGFCKKNDMKTAYTLFSELLELGLMPNVSVYNNLISGFRNLGKMDAA 714

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
             L+ +MV  G++ D  T T +I    K      A +L+  +       D ILY  L+N 
Sbjct: 715 IDLYKKMVNDGISCDLFTYTTMIDGLLKDGNLILASDLYSELLALGIVPDEILYVVLVNG 774

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
            +  G    A ++ E+MK  D   P+   Y+ ++  +   GN++ A  + +EM E G+ 
Sbjct: 775 LSKKGQFVRASKMLEEMKKKD-ATPNVLIYSTVIAGHHREGNLNEAFRVHDEMLEKGLV 832



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 71/309 (22%), Positives = 140/309 (45%), Gaps = 10/309 (3%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF-----ERMYKTGLMPDEVTYSA 262
           ++ N+M+++  E + + Y+TII    +     +A E       E+ Y  G      +Y++
Sbjct: 540 EVINQMIASNFEANEVIYNTIINGLCKVGQTSKAKEMLQNLIKEKRYSMGC----TSYNS 595

Query: 263 ILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG 322
           I+D + K G  +  +  Y     +G  P+ + F+ L   F +S   D    ++ EMKS  
Sbjct: 596 IIDGFFKEGDTDSAVEAYREMSENGISPNVVTFTSLINGFCKSNRMDLALEMIHEMKSKD 655

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382
           ++ ++  Y  L++   K      A +LF E++E GL P+      LI  +        A+
Sbjct: 656 LKLDVPAYGALIDGFCKKNDMKTAYTLFSELLELGLMPNVSVYNNLISGFRNLGKMDAAI 715

Query: 383 ELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNI 442
           +L+++M  +    D   Y T+++     G +  A  L+ ++ L+    PD   Y  ++N 
Sbjct: 716 DLYKKMVNDGISCDLFTYTTMIDGLLKDGNLILASDLYSEL-LALGIVPDEILYVVLVNG 774

Query: 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
               G    A ++ EEM +     NV+  + +I    +   +++  RV    +++G+  D
Sbjct: 775 LSKKGQFVRASKMLEEMKKKDATPNVLIYSTVIAGHHREGNLNEAFRVHDEMLEKGLVHD 834

Query: 503 DRLCGCLLS 511
           D +   L+S
Sbjct: 835 DTIFNLLVS 843



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 82/360 (22%), Positives = 156/360 (43%), Gaps = 9/360 (2%)

Query: 149 PHQPTRENALLIL--NSLKFWQKSYFFFNWIKSQNLFPME--TIFYNVTMKSLRFGRQFQ 204
           PH   R + LL++  +S      S    N + S   F  E  +  +N  + +    R+  
Sbjct: 127 PHTHDRASNLLVMFVSSNPTLIPSAMVNNLVDSSKRFDFELSSRAFNYLLNAYIRNRRMD 186

Query: 205 LIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAIL 264
                 N MV   +       + +++   R NL DEA E + +M   G+  D VT   ++
Sbjct: 187 YAVDCFNLMVDRNVVPFVPYVNNVLSSLVRSNLIDEAKEIYNKMVLIGVAGDNVTTQLLM 246

Query: 265 DVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQ 324
               +  K EE + ++ R ++ G +PD + FS+  +   +  D      +L+EM+  G  
Sbjct: 247 RASLRERKPEEAMKIFRRVMSRGAEPDGLLFSLAVQAACKMKDLVMALDLLREMREKGGV 306

Query: 325 P-NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALE 383
           P +   Y +++ A  K G    A  + DEMV  G+       T+LI  +        AL+
Sbjct: 307 PASQETYTSVIVACVKEGNMEEAVKVKDEMVGFGIPMSVIAATSLITGFCNGNELGKALD 366

Query: 384 LWERMRENKWPMDFILYNTLLN-MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNI 442
            + RM E     D ++++ ++   C ++ + E+A  +++ MK S    P +     M+  
Sbjct: 367 FFNRMEEEGLAPDKVMFSVMIEWFCKNMEM-EKAVEIYKRMK-SVGIAPSSVLVHKMIQG 424

Query: 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
                + + A+E+F +  E  +A   M C  +   L K  ++D       +  ++G++P+
Sbjct: 425 CLKAESPEAALEIFNDSFETWIAHGFM-CNKIFLLLCKQGKVDAATSFLRMMENKGIEPN 483



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 118/241 (48%), Gaps = 12/241 (4%)

Query: 224 TY-STIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           TY S I+ C K  N+ +EA++  + M   G+    +  ++++  +    ++ + L  + R
Sbjct: 312 TYTSVIVACVKEGNM-EEAVKVKDEMVGFGIPMSVIAATSLITGFCNGNELGKALDFFNR 370

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
               G  PD + FSV+ + F ++ + +    + + MKS+G+ P+ V+ + +++   KA  
Sbjct: 371 MEEEGLAPDKVMFSVMIEWFCKNMEMEKAVEIYKRMKSVGIAPSSVLVHKMIQGCLKAES 430

Query: 343 PGLARSLFDEMVESGLTPD---EKTLTALIKIYGKARWAKDALELWERMRENKW-PMDFI 398
           P  A  +F++  E+ +       K    L K  GK     DA   + RM ENK    + +
Sbjct: 431 PEAALEIFNDSFETWIAHGFMCNKIFLLLCK-QGKV----DAATSFLRMMENKGIEPNVV 485

Query: 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458
            YN ++     +  ++ A  +F +M L    +P+N++Y+ +++ +    +  NA E+  +
Sbjct: 486 FYNNMMLAHCRMKNMDLARSIFSEM-LEKGLQPNNFTYSILIDGFFKNQDEQNAWEVINQ 544

Query: 459 M 459
           M
Sbjct: 545 M 545



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/218 (22%), Positives = 100/218 (45%), Gaps = 4/218 (1%)

Query: 192 VTMKSLRFG----RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           VT  SL  G     +  L  ++ +EM S +++LD   Y  +I    + N    A   F  
Sbjct: 626 VTFTSLINGFCKSNRMDLALEMIHEMKSKDLKLDVPAYGALIDGFCKKNDMKTAYTLFSE 685

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           + + GLMP+   Y+ ++  +   GK++  + LY++ V  G   D   ++ +     + G+
Sbjct: 686 LLELGLMPNVSVYNNLISGFRNLGKMDAAIDLYKKMVNDGISCDLFTYTTMIDGLLKDGN 745

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
                 +  E+ +LG+ P+ ++Y  L+  + K G+   A  + +EM +   TP+    + 
Sbjct: 746 LILASDLYSELLALGIVPDEILYVVLVNGLSKKGQFVRASKMLEEMKKKDATPNVLIYST 805

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405
           +I  + +     +A  + + M E     D  ++N L++
Sbjct: 806 VIAGHHREGNLNEAFRVHDEMLEKGLVHDDTIFNLLVS 843


>gi|242051246|ref|XP_002463367.1| hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
 gi|241926744|gb|EER99888.1| hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
          Length = 543

 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 85/322 (26%), Positives = 149/322 (46%), Gaps = 1/322 (0%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           Y + + SL        +E + +EM +  +  D   Y+ +I    R      A E F+   
Sbjct: 205 YTILVDSLSTAGDISKVEAVVDEMKAKNVAGDVYLYTAVINAYCRAGNVRRASEVFDECV 264

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
             G+ P+E TY  +++ + K G++E    L       G   + I F+ +   +   G  D
Sbjct: 265 GNGIEPNERTYGVLINGFCKIGQMEAAEMLLADMQGRGVGHNQIIFNTMIDGYCRQGMVD 324

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               V   M+ +G++ ++  YNTL   + +  +   A++L   M+E G+ P+  T T LI
Sbjct: 325 NALKVKAAMEKMGIELDVYTYNTLACGLCRVNRMAEAKTLLHIMIEKGVPPNYVTYTTLI 384

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
            I+ K     +A  L+  M         + YN +++     G + EAER  ++M+     
Sbjct: 385 SIHCKEGDMVEARRLFREMAGKGAMPSVVTYNVMMDGYIKKGSIREAERFRKEMEKKGLV 444

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
            PD Y+Y ++++ +   G VD A++LFEEM   G   NV+  T LI  L K  R ++  +
Sbjct: 445 -PDVYTYASLVHGHCVNGKVDVALKLFEEMKHRGTEPNVVAYTALISGLAKEGRSEEAFQ 503

Query: 490 VFGVSIDRGVKPDDRLCGCLLS 511
           ++   +  G+ PDD L   L+ 
Sbjct: 504 LYDDMLKAGLTPDDSLYSALVG 525



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 119/267 (44%), Gaps = 42/267 (15%)

Query: 239 DEAIEWFERMYKTGLMPDEVTYSAILDVYAK---SGKVEEVLSLYERGVASGWKPDPIAF 295
           D+A    + M + G+  + + Y+++LD Y +     +V+E+L + E G   G +     +
Sbjct: 149 DDARALLDEMPRHGVRLNALCYNSLLDCYVRRKDDARVQELLEIMENG---GIEATVGTY 205

Query: 296 SVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVE 355
           ++L      +GD   +  V+ EMK+  V  ++ +Y  ++ A  +AG    A  +FDE V 
Sbjct: 206 TILVDSLSTAGDISKVEAVVDEMKAKNVAGDVYLYTAVINAYCRAGNVRRASEVFDECVG 265

Query: 356 SGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEE 415
           +G+ P+E+T                                   Y  L+N    IG +E 
Sbjct: 266 NGIEPNERT-----------------------------------YGVLINGFCKIGQMEA 290

Query: 416 AERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLI 475
           AE L  DM+       +   +  M++ Y   G VDNA+++   M ++G+ ++V     L 
Sbjct: 291 AEMLLADMQ-GRGVGHNQIIFNTMIDGYCRQGMVDNALKVKAAMEKMGIELDVYTYNTLA 349

Query: 476 QCLGKARRIDDLVRVFGVSIDRGVKPD 502
             L +  R+ +   +  + I++GV P+
Sbjct: 350 CGLCRVNRMAEAKTLLHIMIEKGVPPN 376


>gi|255661164|gb|ACU25751.1| pentatricopeptide repeat-containing protein [Glandularia subincana]
          Length = 426

 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 88/283 (31%), Positives = 145/283 (51%), Gaps = 7/283 (2%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D  TYST+IT   +  LFD A+ W ++M +  +  D V YS ++++  K     + +S++
Sbjct: 8   DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
            R   SG+ PD +A++ +  +FG++  +   R ++ EM++ GV PN   Y+TLL    + 
Sbjct: 68  SRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVEN 127

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
            K   A S F EM E     D  T   +I +YG+   AK+A +L+  MR+     + + Y
Sbjct: 128 KKFLEALSXFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSY 187

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           NTLL +  D  L  EA  LF  M+  +  + +  +Y +M+ IYG     + A  L +EM 
Sbjct: 188 NTLLRVYGDAELFGEAIHLFRLMQRKN-IEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 246

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVF------GVSIDR 497
             G+  N +  + +I   GK  ++D    +F      GV ID+
Sbjct: 247 NRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQ 289



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/366 (22%), Positives = 169/366 (46%), Gaps = 6/366 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K     P + + YN  +      + F+    L +EM +  +  +  +YS
Sbjct: 60  YSKAISIFSRLKRSGFTP-DLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYS 118

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY + G  +E   L+      
Sbjct: 119 TLLTMYVENKKFLEALSXFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 178

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   ++ N+V YN+++   GK  +   A
Sbjct: 179 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKA 238

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R +   +D +LY T++  
Sbjct: 239 NNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVA 298

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K     +PDN      ++I    G ++ A  +F +  + G   
Sbjct: 299 YERAGLVAHAKRLLHELK-----RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVK 353

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           ++     +I    K ++  ++V VF      G  PD  +   +L+        +    V 
Sbjct: 354 DITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVY 413

Query: 527 TCLQQA 532
             +Q+ 
Sbjct: 414 MEMQEV 419



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 65/271 (23%), Positives = 137/271 (50%), Gaps = 1/271 (0%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
            +M  + +  D + YS +I  +++   + +AI  F R+ ++G  PD V Y+A+++V+ K+
Sbjct: 33  QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKA 92

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
               E  SL      +G  P+  ++S L  M+ E+  +        EM+ +    +L   
Sbjct: 93  KLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSXFAEMREIKCLLDLTTC 152

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
           N +++  G+ G    A  LF  M + G+ P+  +   L+++YG A    +A+ L+  M+ 
Sbjct: 153 NIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR 212

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
                + + YN+++ +       E+A  L ++M+ +   +P++ +Y+ +++I+G  G +D
Sbjct: 213 KNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ-NRGIEPNSITYSTIISIWGKVGKLD 271

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
            A  LF+++   GV I+ +    +I    +A
Sbjct: 272 RAAMLFQKLRSSGVDIDQVLYQTMIVAYERA 302



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 124/261 (47%), Gaps = 1/261 (0%)

Query: 252 GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGI 311
            L PD  TYS ++  + K G  +  LS  ++        D + +S L ++  +  DY   
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 312 RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371
             +   +K  G  P+LV YN ++   GKA     ARSL  EM  +G+TP+  + + L+ +
Sbjct: 64  ISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTM 123

Query: 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
           Y + +   +AL  +  MRE K  +D    N ++++   +G+ +EA++LF  M+     +P
Sbjct: 124 YVENKKFLEALSXFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG-IEP 182

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           +  SY  +L +YG       AI LF  M    +  NV+    ++   GK    +    + 
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 242

Query: 492 GVSIDRGVKPDDRLCGCLLSV 512
               +RG++P+      ++S+
Sbjct: 243 QEMQNRGIEPNSITYSTIISI 263



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/242 (21%), Positives = 105/242 (43%), Gaps = 5/242 (2%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           P+  +    L +    + + ++   F  ++ +N+     + YN  M       + +    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNI-EQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  EM +  IE ++ITYSTII+   +    D A   F+++  +G+  D+V Y  ++  Y 
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYE 300

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           ++G V       +R +    +PD I   +   +   +G  +   +V ++    G   ++ 
Sbjct: 301 RAGLVAHA----KRLLHELKRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDIT 356

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
           V+  ++    K  K G    +FD+M   G  PD   +  ++  YGK      A +++  M
Sbjct: 357 VFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVYMEM 416

Query: 389 RE 390
           +E
Sbjct: 417 QE 418



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 86/191 (45%), Gaps = 3/191 (1%)

Query: 355 ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
           E  L+PD  T + LI  +GK      AL   ++M +++ P D +LY+ L+ +   +    
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
           +A  +F  +K S +  PD  +Y AM+N++G       A  L  EM   GV  N    + L
Sbjct: 62  KAISIFSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN- 533
           +    + ++  + +  F    +     D   C  ++ V      +++  K+   +++   
Sbjct: 121 LTMYVENKKFLEALSXFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180

Query: 534 -PKLVAFLNLI 543
            P +V++  L+
Sbjct: 181 EPNVVSYNTLL 191


>gi|440804730|gb|ELR25603.1| pentatricopeptide repeat domain containing protein [Acanthamoeba
           castellanii str. Neff]
          Length = 642

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 106/425 (24%), Positives = 181/425 (42%), Gaps = 32/425 (7%)

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
            +   + + GL PD   +SA++     +G+ +E    + R    G  P+   FS L    
Sbjct: 159 HYLAEIERRGLTPDSHCFSALITALGGAGRADEAERYFARMTQLGLAPNLHCFSALINAL 218

Query: 303 GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
           G +G  D        M  LGV P+   ++TL+ A+G AG+   A   F +M + G+ PD 
Sbjct: 219 GNAGRVDDAERCFDAMDQLGVVPDAHCFSTLIAALGTAGRVAEAERHFAKMEKLGVVPDL 278

Query: 363 KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED 422
              + L+    KA     A  ++ ++       D + +N L++  AD G  +EAE  F  
Sbjct: 279 HCFSTLMSALTKAGKVDAAQHVFHQIASRGLKPDLVCFNALISGFADAGRADEAEHWFAK 338

Query: 423 MKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI--------NVMGCTCL 474
           +  +   KPD  SY+A++         D A+ L +EM+   + +        NV+  T +
Sbjct: 339 ITTTGRLKPDRISYSALIQANEVVARPDRALALLQEMTHKVLTLCLLLVCDQNVVSYTTV 398

Query: 475 IQCLGKAR---RIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSL---CETSEDVGKVITC 528
           I CL KAR    +D    VF   + +GV+P+    G L+   +L    ET+    K ++ 
Sbjct: 399 ISCLAKARGRHHMDQAQEVFNEMVKQGVRPNATTFGALIHGHALMGDLETARSRLKQMST 458

Query: 529 LQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTE---VDARRP---FCNCLIDICRN 582
                P       L++       +  E +  V++  +    +  RP     + +ID    
Sbjct: 459 EFNLAPAAEIHNILMDAEKRVATDPVEAYHQVLRAVDHMKQEGVRPDHATFSIVIDAAGF 518

Query: 583 RNL-NERAHELLYLGTLYGLYPGLHNKT-----------LDEWSLDVRSLSVGAAQTALE 630
             L +E  H+   + +L+GL+P  +N T           LD+    + SL+   A +ALE
Sbjct: 519 AGLPHEAEHQFHAMTSLHGLHPNANNFTSLIEALARNGQLDKAEAVLDSLAARQATSALE 578

Query: 631 EWMWT 635
               T
Sbjct: 579 HDRLT 583



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/266 (28%), Positives = 123/266 (46%), Gaps = 9/266 (3%)

Query: 239 DEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
           DE +   +R ++  L P  V  SA+L + A++ + E  + L E     G  P+    S L
Sbjct: 90  DELVATIKRTHQ--LHPSAV--SAVLPLLARTRQWETAVELVELMPRHGHTPNLFVISGL 145

Query: 299 GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
            K+ G++   D   Y L E++  G+ P+   ++ L+ A+G AG+   A   F  M + GL
Sbjct: 146 LKVLGQARQPDNAHY-LAEIERRGLTPDSHCFSALITALGGAGRADEAERYFARMTQLGL 204

Query: 359 TPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAER 418
            P+    +ALI   G A    DA   ++ M +     D   ++TL+      G V EAER
Sbjct: 205 APNLHCFSALINALGNAGRVDDAERCFDAMDQLGVVPDAHCFSTLIAALGTAGRVAEAER 264

Query: 419 LFEDM-KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
            F  M KL     PD + ++ +++     G VD A  +F +++  G+  +++    LI  
Sbjct: 265 HFAKMEKLG--VVPDLHCFSTLMSALTKAGKVDAAQHVFHQIASRGLKPDLVCFNALISG 322

Query: 478 LGKARRIDDLVRVFGVSIDRG-VKPD 502
              A R D+    F      G +KPD
Sbjct: 323 FADAGRADEAEHWFAKITTTGRLKPD 348


>gi|85000739|ref|XP_955088.1| hypothetical protein [Theileria annulata strain Ankara]
 gi|65303234|emb|CAI75612.1| hypothetical protein, conserved [Theileria annulata]
          Length = 559

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 140/281 (49%), Gaps = 9/281 (3%)

Query: 252 GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG-WKPDPIAFSVLGKMFGESGDYDG 310
           G    E+ Y  + D Y  +  V+  + L+E     G  KP+ I ++ L K +G++   D 
Sbjct: 170 GANNSEIVYGCMFDAYVNNNSVDSAMRLFEDMKERGKVKPNTIMYTTLIKGYGQNKQLDK 229

Query: 311 IRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK 370
              + + M+  GV+PN V YN++++A  + G+ G A  L +EM+ SG+ PD  T + +IK
Sbjct: 230 AMRIFRLMQQDGVEPNTVTYNSIIDACARVGEMGSATRLLEEMLSSGIEPDLITFSTIIK 289

Query: 371 IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCK 430
            Y        + +L   M E     D ILYN+LL  C   GL+   E+L+  M+  +   
Sbjct: 290 GYCVQSDMDKSFQLLSVMYERGIMPDVILYNSLLEGCVKSGLLWLCEKLWSQMQEYN-IP 348

Query: 431 PDNYSYTAMLNIYGSGGNVDNAIELFEEM-SELGVAINVMGCTCLIQ-CL--GKARRIDD 486
           P N++ T ++ +YG  G +D   EL +E+      +IN    TCL+  C+  G+   + D
Sbjct: 349 PSNFTLTILIKMYGRSGQLDKVFELADELPKRYNFSINTHVYTCLMSACITNGRYAMVLD 408

Query: 487 LVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVIT 527
           + +   ++   GVKPD +    ++  +S     ++   V+T
Sbjct: 409 IYKYMKIN---GVKPDAKTFETIIQGLSRGSLFKEAAHVVT 446



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 125/247 (50%), Gaps = 2/247 (0%)

Query: 217 EIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV 276
           +++ + I Y+T+I    +    D+A+  F  M + G+ P+ VTY++I+D  A+ G++   
Sbjct: 206 KVKPNTIMYTTLIKGYGQNKQLDKAMRIFRLMQQDGVEPNTVTYNSIIDACARVGEMGSA 265

Query: 277 LSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA 336
             L E  ++SG +PD I FS + K +    D D    +L  M   G+ P++++YN+LLE 
Sbjct: 266 TRLLEEMLSSGIEPDLITFSTIIKGYCVQSDMDKSFQLLSVMYERGIMPDVILYNSLLEG 325

Query: 337 MGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM-RENKWPM 395
             K+G   L   L+ +M E  + P   TLT LIK+YG++       EL + + +   + +
Sbjct: 326 CVKSGLLWLCEKLWSQMQEYNIPPSNFTLTILIKMYGRSGQLDKVFELADELPKRYNFSI 385

Query: 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIEL 455
           +  +Y  L++ C   G       +++ MK++   KPD  ++  ++     G     A  +
Sbjct: 386 NTHVYTCLMSACITNGRYAMVLDIYKYMKING-VKPDAKTFETIIQGLSRGSLFKEAAHV 444

Query: 456 FEEMSEL 462
             E+  L
Sbjct: 445 VTEVYSL 451



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 79/171 (46%), Gaps = 8/171 (4%)

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE-NKWPMDFILYNTLLNMCADIGL 412
           V +G    E     +   Y        A+ L+E M+E  K   + I+Y TL+        
Sbjct: 167 VSNGANNSEIVYGCMFDAYVNNNSVDSAMRLFEDMKERGKVKPNTIMYTTLIKGYGQNKQ 226

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
           +++A R+F  M+  D  +P+  +Y ++++     G + +A  L EEM   G+  +++  +
Sbjct: 227 LDKAMRIFRLMQ-QDGVEPNTVTYNSIIDACARVGEMGSATRLLEEMLSSGIEPDLITFS 285

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPD-----DRLCGCLLS-VVSLCE 517
            +I+       +D   ++  V  +RG+ PD       L GC+ S ++ LCE
Sbjct: 286 TIIKGYCVQSDMDKSFQLLSVMYERGIMPDVILYNSLLEGCVKSGLLWLCE 336


>gi|41152687|dbj|BAD08212.1| hypothetical protein [Oryza sativa Indica Group]
 gi|46091163|dbj|BAD13710.1| PPR protein [Oryza sativa Indica Group]
 gi|67906116|dbj|BAE00068.1| PPR protein [Oryza sativa Indica Group]
 gi|114437073|gb|ABI74690.1| fertility restorer [Oryza sativa Indica Group]
          Length = 683

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 145/292 (49%), Gaps = 1/292 (0%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
           NEM+   I  + +TY++II    +    D+A+E    M K+G+MPD +TY++I+  +  S
Sbjct: 112 NEMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSS 171

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
           G+ +E +   ++  + G +PD + ++ L     ++G     R +   M   G++P +  Y
Sbjct: 172 GQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPEITTY 231

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
            TLL+     G       L D MV +G+ P+    + L+  Y K    ++A+ ++ +MR+
Sbjct: 232 GTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQ 291

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
                + + Y  ++ +    G VE+A   FE M + +   P N  Y ++++   +    +
Sbjct: 292 QGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQM-IDEGLSPGNIVYNSLIHGLCTCNKWE 350

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            A EL  EM + G+ +N +    +I    K  R+ +  ++F + +  GVKPD
Sbjct: 351 RAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPD 402



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 138/286 (48%), Gaps = 1/286 (0%)

Query: 206 IEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
           +  L + MV N I  ++  +S ++    +    +EA+  F +M + GL P+ VTY A++ 
Sbjct: 247 MHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIG 306

Query: 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325
           +  KSG+VE+ +  +E+ +  G  P  I ++ L         ++    ++ EM   G+  
Sbjct: 307 ILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICL 366

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
           N + +N+++++  K G+   +  LFD MV  G+ PD  T + LI  Y  A    +A +L 
Sbjct: 367 NTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLL 426

Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445
             M       D + Y+TL+N    I  +++A  LF +M+ S    PD  +Y  +L     
Sbjct: 427 ASMVSVGMKPDCVTYSTLINGYCKISRMKDALVLFREME-SSGVSPDIITYNIILQGLFQ 485

Query: 446 GGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
                 A EL+  +++ G  + +     ++  L K +  DD +R+F
Sbjct: 486 TRRTAAAKELYVGITKSGRQLELSTYNIILHGLCKNKLTDDALRMF 531



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 146/303 (48%), Gaps = 8/303 (2%)

Query: 168 QKSYFFFNWIKSQNLFPMETIF---YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNIT 224
           +++   F+ ++ Q L P    +     +  KS R        EQ+ +E +S      NI 
Sbjct: 280 EEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSP----GNIV 335

Query: 225 YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
           Y+++I     CN ++ A E    M   G+  + + +++I+D + K G+V E   L++  V
Sbjct: 336 YNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMV 395

Query: 285 ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344
             G KPD I +S L   +  +G  D    +L  M S+G++P+ V Y+TL+    K  +  
Sbjct: 396 RIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYSTLINGYCKISRMK 455

Query: 345 LARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
            A  LF EM  SG++PD  T   +++   + R    A EL+  + ++   ++   YN +L
Sbjct: 456 DALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITKSGRQLELSTYNIIL 515

Query: 405 NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
           +      L ++A R+F+++ L D  K +  ++  M++     G  D A +LF   S  G+
Sbjct: 516 HGLCKNKLTDDALRMFQNLCLMDL-KLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGL 574

Query: 465 AIN 467
             N
Sbjct: 575 VPN 577



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 2/125 (1%)

Query: 379 KDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY-CKPDNYSYT 437
           +DA  +++ +     P D   YN LLN   D    +EA  L   M      C PD  SY+
Sbjct: 34  EDARHVFDELLRRGIP-DVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYS 92

Query: 438 AMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDR 497
            ++N +   G++D     + EM +  ++ NV+    +I  L KA+ +D  + V    +  
Sbjct: 93  TVINGFFKEGDLDKTYSTYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKS 152

Query: 498 GVKPD 502
           GV PD
Sbjct: 153 GVMPD 157


>gi|302774757|ref|XP_002970795.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
 gi|302806735|ref|XP_002985099.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300147309|gb|EFJ13974.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300161506|gb|EFJ28121.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
          Length = 543

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 98/395 (24%), Positives = 180/395 (45%), Gaps = 18/395 (4%)

Query: 160 ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSL-----RFGRQFQLIEQLANEMV 214
           +L  +K    S FFF W+   +    E+I  N T   L     +  R  Q  +   +E++
Sbjct: 40  VLQVIKDVDVSLFFFRWVTRSH--RGESIHNNFTCNCLLRTLVKARRHHQAYQIFRDELL 97

Query: 215 SNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVE 274
               + ++ITY+T+I    +    + A +    M + G  PD VT+S+I+     +G + 
Sbjct: 98  GQHCDTNHITYNTLIGGFCKAGDMERAFQLLAEMKERGHSPDVVTHSSIVQALCNTGNLS 157

Query: 275 EVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLL 334
             +  +   V     PD + F++L     ++      R +++EM   G+ P++V YN+L+
Sbjct: 158 RAMQYFRESVECA--PDSVLFNILVHGLCKANQLSEARQMIEEMSERGIVPDVVTYNSLI 215

Query: 335 EAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWP 394
           + + K+ +   AR L + MV+  + P+  T   LI  Y K      A +L ERM ++   
Sbjct: 216 DGLCKSYRMEEARQLLETMVKRKVRPNLVTYNTLIYGYCKTGCTGLAHQLIERMIQSGTH 275

Query: 395 MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIE 454
            D + +N+L++       +++A  +   MK    C P+  +Y  +++     G  + A E
Sbjct: 276 PDVVTFNSLISGFCQKSKIDKACEVLHLMK-KGLCAPNLVTYNVLISGLCDAGRANEACE 334

Query: 455 LFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVS 514
           L  EM   G+  +++    LI    +  +I+   ++  + ++RGV PD  +  C L+V  
Sbjct: 335 LLSEMDGRGILPDIITYNSLIGIFCRNFQIEQAFQIQNLMVERGVIPDG-ISYCTLAVAL 393

Query: 515 LCETSEDVGKVITCLQQ-----ANPKLVAFLNLIE 544
           L   SE   +    L       A P L  F +L+E
Sbjct: 394 L--KSERFDEAFALLDNMFDAGAIPNLFTFNSLME 426



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 86/316 (27%), Positives = 138/316 (43%), Gaps = 1/316 (0%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           +++ +N+ +  L    Q     Q+  EM    I  D +TY+++I    +    +EA +  
Sbjct: 172 DSVLFNILVHGLCKANQLSEARQMIEEMSERGIVPDVVTYNSLIDGLCKSYRMEEARQLL 231

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           E M K  + P+ VTY+ ++  Y K+G       L ER + SG  PD + F+ L   F + 
Sbjct: 232 ETMVKRKVRPNLVTYNTLIYGYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSLISGFCQK 291

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
              D    VL  MK     PNLV YN L+  +  AG+   A  L  EM   G+ PD  T 
Sbjct: 292 SKIDKACEVLHLMKKGLCAPNLVTYNVLISGLCDAGRANEACELLSEMDGRGILPDIITY 351

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
            +LI I+ +    + A ++   M E     D I Y TL          +EA  L ++M  
Sbjct: 352 NSLIGIFCRNFQIEQAFQIQNLMVERGVIPDGISYCTLAVALLKSERFDEAFALLDNM-F 410

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
                P+ +++ +++        +D A  L   M  +G          L+  L KA R+D
Sbjct: 411 DAGAIPNLFTFNSLMEGLCCSRRLDEARHLLAVMRRVGCDPAASTYEVLVTGLCKAGRVD 470

Query: 486 DLVRVFGVSIDRGVKP 501
           D   V  + +  G++P
Sbjct: 471 DAKEVLVMMVSEGIQP 486



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 83/178 (46%), Gaps = 5/178 (2%)

Query: 199 FGRQFQLIE--QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPD 256
           F R FQ+ +  Q+ N MV   +  D I+Y T+     +   FDEA    + M+  G +P+
Sbjct: 358 FCRNFQIEQAFQIQNLMVERGVIPDGISYCTLAVALLKSERFDEAFALLDNMFDAGAIPN 417

Query: 257 EVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQ 316
             T++++++    S +++E   L       G  P    + VL     ++G  D  + VL 
Sbjct: 418 LFTFNSLMEGLCCSRRLDEARHLLAVMRRVGCDPAASTYEVLVTGLCKAGRVDDAKEVLV 477

Query: 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES---GLTPDEKTLTALIKI 371
            M S G+QP +    T++  + + GK  LA   FD++V +      P  + L   +K+
Sbjct: 478 MMVSEGIQPLVSSSGTIVHTLAREGKQDLALHYFDQVVAAESKACDPSYQKLLEFVKV 535


>gi|32527604|gb|AAP86199.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 686

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 97/377 (25%), Positives = 171/377 (45%), Gaps = 17/377 (4%)

Query: 141 FLRAITEIPH-QPTRENALLILNSL---KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKS 196
            LR + EI H +P       I++ L        S+  F  ++ + +FP   + YN  +  
Sbjct: 239 LLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFP-NIVTYNCMIGG 297

Query: 197 LRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPD 256
                ++   ++L  EM+  +I  + +TY+ +I    +   F EA E ++ M   G++P+
Sbjct: 298 FCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPN 357

Query: 257 EVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQ 316
            +TY++++D + K  +++    ++      G  PD   F+ L   +  +   D    +L 
Sbjct: 358 TITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLH 417

Query: 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
           EM   G+  N V YNTL+      G    A  L  +M+ SG+ PD  T   L+       
Sbjct: 418 EMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNG 477

Query: 377 WAKDALELWERMRENKWPM-----------DFILYNTLLNMCADIGLVEEAERLFEDMKL 425
             KDALE+++ M+++K  +           D + YN L+    + G   EAE L+E+M  
Sbjct: 478 KLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPH 537

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
                PD  +Y++M++       +D A ++F  M     + NV+    LI    KA R+D
Sbjct: 538 RGIV-PDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVD 596

Query: 486 DLVRVFGVSIDRGVKPD 502
           D + +F     RG+  D
Sbjct: 597 DGLELFCEMGRRGIVAD 613



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 91/365 (24%), Positives = 168/365 (46%), Gaps = 43/365 (11%)

Query: 163 SLKFWQKSYFFFNWIKSQNLF-------PMETIF-YNVTMKSLRFGRQFQLIEQLANEMV 214
           SLK    SY       + +LF       P+ ++  +N  M ++    +  L+  L  +M 
Sbjct: 49  SLKLRSGSYEIKGLEDAIDLFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQKME 108

Query: 215 SNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAI----------- 263
             +I  D  +++ +I C   C+    A+  F ++ K GL PD VT++ +           
Sbjct: 109 RKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVS 168

Query: 264 --LDVY------------------AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
             LD++                   + G+V E ++L +R V +G +PD I +        
Sbjct: 169 EALDLFHQICRPDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMC 228

Query: 304 ESGDYDGIRYVLQEMKSLG-VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
           + GD      +L++M+ +  ++PN+V+Y+ +++ + K G+   + +LF EM + G+ P+ 
Sbjct: 229 KMGDTVSALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNI 288

Query: 363 KTLTALIKIYG-KARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFE 421
            T   +I  +    RW+  A  L + M E K   + + YN L+N     G   EA  L++
Sbjct: 289 VTYNCMIGGFCISGRWSA-AQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYD 347

Query: 422 DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
           +M L     P+  +Y +M++ +     +D A ++F  M+  G + +V   T LI     A
Sbjct: 348 EM-LPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGA 406

Query: 482 RRIDD 486
           +RIDD
Sbjct: 407 KRIDD 411



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 89/176 (50%), Gaps = 4/176 (2%)

Query: 216 NEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEE 275
           N +E D +TY+ +I        F EA E +E M   G++PD +TYS+++D   K  +++E
Sbjct: 503 NGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDE 562

Query: 276 VLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLE 335
              ++    +  + P+ + F+ L   + ++G  D    +  EM   G+  + ++Y TL+ 
Sbjct: 563 ATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIY 622

Query: 336 AMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN 391
              K G    A  +F EM+ SG+ PD  T+  ++  +    W+K+ LE    M E+
Sbjct: 623 GFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGF----WSKEELERAVAMLED 674



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/265 (22%), Positives = 119/265 (44%), Gaps = 4/265 (1%)

Query: 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
            ++AI+ F  M ++  +P  + ++ ++    +  + + V+SLY++      + D  +F++
Sbjct: 62  LEDAIDLFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTI 121

Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
           L K F              ++  LG+ P++V + TLL  +    +   A  LF ++    
Sbjct: 122 LIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQICR-- 179

Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417
             PD  T T L+    +     +A+ L +RM EN    D I Y T ++    +G    A 
Sbjct: 180 --PDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSAL 237

Query: 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
            L   M+   + KP+   Y+A+++     G   ++  LF EM + G+  N++   C+I  
Sbjct: 238 NLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGG 297

Query: 478 LGKARRIDDLVRVFGVSIDRGVKPD 502
              + R     R+    ++R + P+
Sbjct: 298 FCISGRWSAAQRLLQEMLERKISPN 322



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 81/174 (46%)

Query: 161 LNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIEL 220
           L   K  QKS    +     N    + + YN+ +  L    +F   E+L  EM    I  
Sbjct: 483 LEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVP 542

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D ITYS++I    + +  DEA + F  M      P+ VT++ +++ Y K+G+V++ L L+
Sbjct: 543 DTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELF 602

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLL 334
                 G   D I +  L   F + G+ +G   + QEM S GV P+ +    +L
Sbjct: 603 CEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNML 656


>gi|162462150|ref|NP_001105879.1| chloroplast RNA processing1 [Zea mays]
 gi|3289002|gb|AAC25599.1| CRP1 [Zea mays]
          Length = 668

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 153/332 (46%), Gaps = 4/332 (1%)

Query: 172 FFFNWIKSQNLFPMETIFYNVTMKS-LRFGRQFQLIEQLANEMVSNEIELDNITYSTIIT 230
            F  +  +  + P  T  YN  +K  +R G   +  EQ+ +EM    +  D  TYS ++ 
Sbjct: 285 LFLEFFLAGEIKP-RTRAYNALLKGYVRIG-SLKNAEQVLDEMSQCGVAPDEATYSLLVD 342

Query: 231 CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
              R   ++ A    + M   G+ P    +S IL  +   G  ++  ++     ASG +P
Sbjct: 343 AYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRP 402

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
           D   ++V+   FG+            +M+  G++P++V +NTL++A  K G+   A  LF
Sbjct: 403 DRHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAAELF 462

Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
           +EM ES   P   T   +I + G+    +    +   M+E     + I Y TL+++    
Sbjct: 463 EEMRESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRS 522

Query: 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG 470
           G  +EA    E MK +D  KP    Y A++N Y   G  D+A+ + + M   G+ ++++ 
Sbjct: 523 GRYKEAIDCIEAMK-ADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMKADGLEVSILV 581

Query: 471 CTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
              LI   G+ RR+ +   V     + G++PD
Sbjct: 582 LNSLINAFGEDRRVVEAFSVLQFMRENGLRPD 613



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 140/299 (46%), Gaps = 2/299 (0%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           W+ +      +++  + P   +F  + +   R    +Q    +  EM ++ +  D   Y+
Sbjct: 350 WESARILLKEMEADGVKPSSYVFSRI-LAGFRDRGDWQKAFAVLREMQASGVRPDRHFYN 408

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
            +I    + N    A++ F +M + G+ PD VT++ ++D + K G+ +    L+E    S
Sbjct: 409 VMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAAELFEEMRES 468

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
              P    ++++  + GE   ++G+  +L EMK  G+ PN++ Y TL++  G++G+   A
Sbjct: 469 NCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEA 528

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
               + M   GL P      AL+  Y +   A  AL + + M+ +   +  ++ N+L+N 
Sbjct: 529 IDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMKADGLEVSILVLNSLINA 588

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
             +   V EA  + + M+  +  +PD  +YT ++         D    ++EEM   G A
Sbjct: 589 FGEDRRVVEAFSVLQFMR-ENGLRPDVITYTTLMKALIRVEQFDKVPVIYEEMITSGCA 646



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/362 (22%), Positives = 155/362 (42%), Gaps = 37/362 (10%)

Query: 205 LIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAIL 264
           L+E+L  ++  + +E D   +S +I+   R  L D A+E        GL P     +A++
Sbjct: 211 LLERLLGDLRESRLEPDAPLFSDLISAFARAALPDAALELLASAQAIGLTPRSNAVTALI 270

Query: 265 DVYAKSGKVEEVLSLY------------------------------------ERGVASGW 288
                +G+V E  +L+                                    +     G 
Sbjct: 271 SALGTAGRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVRIGSLKNAEQVLDEMSQCGV 330

Query: 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348
            PD   +S+L   +  +G ++  R +L+EM++ GV+P+  V++ +L      G    A +
Sbjct: 331 APDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFA 390

Query: 349 LFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCA 408
           +  EM  SG+ PD      +I  +GK      A++ + +MRE     D + +NTL++   
Sbjct: 391 VLREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAHC 450

Query: 409 DIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINV 468
             G  + A  LFE+M+ S+ C P   +Y  M+N+ G   + +    +  EM E G+  N+
Sbjct: 451 KGGRHDRAAELFEEMRESN-CPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNI 509

Query: 469 MGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITC 528
           +  T L+   G++ R  + +         G+KP   +   L++  +    ++    V+  
Sbjct: 510 ITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKA 569

Query: 529 LQ 530
           ++
Sbjct: 570 MK 571



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 95/196 (48%), Gaps = 1/196 (0%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F  ++  N  P  T  YN+ +  L     ++ +E + +EM    +  + ITY+T++   
Sbjct: 461 LFEEMRESNC-PPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLVDVY 519

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            R   + EAI+  E M   GL P    Y A+++ YA+ G  +  L++ +   A G +   
Sbjct: 520 GRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMKADGLEVSI 579

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           +  + L   FGE         VLQ M+  G++P+++ Y TL++A+ +  +      +++E
Sbjct: 580 LVLNSLINAFGEDRRVVEAFSVLQFMRENGLRPDVITYTTLMKALIRVEQFDKVPVIYEE 639

Query: 353 MVESGLTPDEKTLTAL 368
           M+ SG  PD K    L
Sbjct: 640 MITSGCAPDRKARAML 655



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 79/180 (43%), Gaps = 3/180 (1%)

Query: 325 PNLVVYNTLLEAMGKAGKP---GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
           P+L  Y+ LL ++     P    L   L  ++ ES L PD    + LI  + +A     A
Sbjct: 188 PDLASYSHLLASLLNTRDPPDAALLERLLGDLRESRLEPDAPLFSDLISAFARAALPDAA 247

Query: 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
           LEL    +             L++     G V EAE LF +  L+   KP   +Y A+L 
Sbjct: 248 LELLASAQAIGLTPRSNAVTALISALGTAGRVAEAEALFLEFFLAGEIKPRTRAYNALLK 307

Query: 442 IYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
            Y   G++ NA ++ +EMS+ GVA +    + L+    +A R +    +       GVKP
Sbjct: 308 GYVRIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKP 367


>gi|414880311|tpg|DAA57442.1| TPA: hypothetical protein ZEAMMB73_673693 [Zea mays]
          Length = 770

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 142/298 (47%), Gaps = 1/298 (0%)

Query: 191 NVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYK 250
           N  +  L  G   +   ++   MV + +E D ITY+ +I    + +  +EAI+  + M K
Sbjct: 466 NALIHGLCQGNNMKEATKVLKAMVDSGVEFDRITYNIMIQFCCKASKMEEAIQLRDDMIK 525

Query: 251 TGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDG 310
            G  PD  T++  L  Y   GKVE++L L ++  + G KPD + +  +   + ++ D   
Sbjct: 526 RGFKPDLFTFNTFLRAYCNLGKVEDILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDVHK 585

Query: 311 IRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK 370
               L E+   G++PN V+YN L+   G+ G    A  + D M  +G+ P   T  +L+ 
Sbjct: 586 ANKYLIELIKNGLRPNAVIYNALIGGYGRNGSISDAIGVLDTMKHNGIQPTPITYNSLMY 645

Query: 371 IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCK 430
               A   ++A E++ +       +  I Y  ++     IG ++EA   F++M   D  +
Sbjct: 646 WMCHAGLVEEAKEIFAQCILKNIELGVIGYTIIIQGFCKIGKIDEAVMYFKEMHYRDI-R 704

Query: 431 PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLV 488
           P+  +YT ++  Y   GN + A +LF+EM   G+  + +    LI    +   +D +V
Sbjct: 705 PNKMTYTTLMYAYCKCGNKEEAFKLFDEMVSSGIVPDTVSYNTLISGCCEVDSLDKIV 762



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 132/267 (49%), Gaps = 1/267 (0%)

Query: 236 NLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAF 295
           N   EA +  + M  +G+  D +TY+ ++    K+ K+EE + L +  +  G+KPD   F
Sbjct: 476 NNMKEATKVLKAMVDSGVEFDRITYNIMIQFCCKASKMEEAIQLRDDMIKRGFKPDLFTF 535

Query: 296 SVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVE 355
           +   + +   G  + I ++L +MKS G++P++V Y T+++   KA     A     E+++
Sbjct: 536 NTFLRAYCNLGKVEDILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDVHKANKYLIELIK 595

Query: 356 SGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEE 415
           +GL P+     ALI  YG+     DA+ + + M+ N      I YN+L+      GLVEE
Sbjct: 596 NGLRPNAVIYNALIGGYGRNGSISDAIGVLDTMKHNGIQPTPITYNSLMYWMCHAGLVEE 655

Query: 416 AERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLI 475
           A+ +F    L +  +     YT ++  +   G +D A+  F+EM    +  N M  T L+
Sbjct: 656 AKEIFAQCILKNI-ELGVIGYTIIIQGFCKIGKIDEAVMYFKEMHYRDIRPNKMTYTTLM 714

Query: 476 QCLGKARRIDDLVRVFGVSIDRGVKPD 502
               K    ++  ++F   +  G+ PD
Sbjct: 715 YAYCKCGNKEEAFKLFDEMVSSGIVPD 741



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 127/511 (24%), Positives = 217/511 (42%), Gaps = 54/511 (10%)

Query: 5   LSTALDVHLSIPKSDTKRPIFLTKPTRRSHPIKINISCNSKSSENVAAESPNPETKTLSL 64
           LS+AL V    P SD KR + +                   +S   +  +P P +  L L
Sbjct: 27  LSSALSV---APSSDAKRDLAILLRRLGG---------RGLASALSSLPAPLPASSALRL 74

Query: 65  SEQLKPLSSTTLSPTKNDRTPLLSKPKSTWVNPT--KPRRSVLSLQRQKRSTYSYNPRVR 122
            + +  LS T  S +++    LLS   ST + P+      S+ S +R       +NP   
Sbjct: 75  LQHI--LSDTHASASRHAED-LLSPRVSTLLLPSLVADGASLPSARRLISRLLFFNP--- 128

Query: 123 DLKLFARKL--NDCDNTEEAFLRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQ 180
            L + A  +  +DC  T +  +RA    P             SL     ++     + ++
Sbjct: 129 -LSVAAAAIADSDCTATADLLVRACLNSPAP----------GSLSCAADAFL---ELSTR 174

Query: 181 NLFP-METIFYNVTMKSLRFGRQFQLIEQLANEMV-SNEIELDNITYSTIITCAKRCNLF 238
              P ++T   N+ +++L  G Q  L  ++  EM   N +  D  TY+ +I    R    
Sbjct: 175 GASPSIKTC--NILVEALGCGGQLDLARKVFGEMRDGNAVAPDVYTYTVMIKALCRAGEI 232

Query: 239 DEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
           D A      + ++G+ P  VTY+ ++D   +SG+VEE   L  R V    +P  + F +L
Sbjct: 233 DAAFVMLAELERSGIQPTVVTYNVLMDALCRSGRVEEAFQLKGRMVEGRLRPSIVTFGIL 292

Query: 299 ------GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
                 G+ FGE      +  VLQEM+  G+ PN V+YN L+    + G    A  LFDE
Sbjct: 293 INGLARGQRFGE------VDAVLQEMEGFGITPNEVIYNQLIGWHCREGHCSEALRLFDE 346

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN-MCADIG 411
           MV  G+     T   + K   K    + A ++ + M      +   L+N+++       G
Sbjct: 347 MVSKGIKQTVVTYNLIAKALCKEGEMEHAEQILDEMLLAGMTVHCSLFNSVVAWHLRGTG 406

Query: 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC 471
            ++   RL  +M ++ + KP++   TA +      G  + A E++  +   G+ +N+   
Sbjct: 407 RLDVVLRLIREM-VARFLKPNDAVMTACIQELCKRGKHEEAAEIWFLVLGKGLGVNIATS 465

Query: 472 TCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
             LI  L +   + +  +V    +D GV+ D
Sbjct: 466 NALIHGLCQGNNMKEATKVLKAMVDSGVEFD 496



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 79/353 (22%), Positives = 152/353 (43%), Gaps = 39/353 (11%)

Query: 187 TIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
            + YNV M +L R GR  +   QL   MV   +    +T+  +I    R   F E     
Sbjct: 251 VVTYNVLMDALCRSGRVEEAF-QLKGRMVEGRLRPSIVTFGILINGLARGQRFGEVDAVL 309

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           + M   G+ P+EV Y+ ++  + + G   E L L++  V+ G K   + ++++ K   + 
Sbjct: 310 QEMEGFGITPNEVIYNQLIGWHCREGHCSEALRLFDEMVSKGIKQTVVTYNLIAKALCKE 369

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLE-AMGKAGKPGLARSLFDEMVESGLTPDEKT 364
           G+ +    +L EM   G+  +  ++N+++   +   G+  +   L  EMV   L P++  
Sbjct: 370 GEMEHAEQILDEMLLAGMTVHCSLFNSVVAWHLRGTGRLDVVLRLIREMVARFLKPNDAV 429

Query: 365 LTALIKIYGKARWAKDALELW-----------------------------------ERMR 389
           +TA I+   K    ++A E+W                                   + M 
Sbjct: 430 MTACIQELCKRGKHEEAAEIWFLVLGKGLGVNIATSNALIHGLCQGNNMKEATKVLKAMV 489

Query: 390 ENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNV 449
           ++    D I YN ++  C     +EEA +L +DM    + KPD +++   L  Y + G V
Sbjct: 490 DSGVEFDRITYNIMIQFCCKASKMEEAIQLRDDMIKRGF-KPDLFTFNTFLRAYCNLGKV 548

Query: 450 DNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           ++ + L ++M   G+  +++    +I    KA+ +    +     I  G++P+
Sbjct: 549 EDILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDVHKANKYLIELIKNGLRPN 601



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 129/277 (46%), Gaps = 5/277 (1%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNL--FDEAIE 243
           + I YN+ ++      + +   QL ++M+    + D  T++T +     CNL   ++ + 
Sbjct: 496 DRITYNIMIQFCCKASKMEEAIQLRDDMIKRGFKPDLFTFNTFLR--AYCNLGKVEDILH 553

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
             ++M   GL PD VTY  I+D Y K+  V +        + +G +P+ + ++ L   +G
Sbjct: 554 LLDQMKSEGLKPDIVTYGTIIDGYCKAKDVHKANKYLIELIKNGLRPNAVIYNALIGGYG 613

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
            +G       VL  MK  G+QP  + YN+L+  M  AG    A+ +F + +   +     
Sbjct: 614 RNGSISDAIGVLDTMKHNGIQPTPITYNSLMYWMCHAGLVEEAKEIFAQCILKNIELGVI 673

Query: 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
             T +I+ + K     +A+  ++ M       + + Y TL+      G  EEA +LF++M
Sbjct: 674 GYTIIIQGFCKIGKIDEAVMYFKEMHYRDIRPNKMTYTTLMYAYCKCGNKEEAFKLFDEM 733

Query: 424 KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
            +S    PD  SY  +++      ++D  +E   EMS
Sbjct: 734 -VSSGIVPDTVSYNTLISGCCEVDSLDKIVESPAEMS 769



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 79/340 (23%), Positives = 153/340 (45%), Gaps = 3/340 (0%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE-WF 245
           ++F +V    LR   +  ++ +L  EMV+  ++ ++   +  I    +    +EA E WF
Sbjct: 392 SLFNSVVAWHLRGTGRLDVVLRLIREMVARFLKPNDAVMTACIQELCKRGKHEEAAEIWF 451

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
             + K GL  +  T +A++    +   ++E   + +  V SG + D I ++++ +   ++
Sbjct: 452 LVLGK-GLGVNIATSNALIHGLCQGNNMKEATKVLKAMVDSGVEFDRITYNIMIQFCCKA 510

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
              +    +  +M   G +P+L  +NT L A    GK      L D+M   GL PD  T 
Sbjct: 511 SKMEEAIQLRDDMIKRGFKPDLFTFNTFLRAYCNLGKVEDILHLLDQMKSEGLKPDIVTY 570

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
             +I  Y KA+    A +    + +N    + ++YN L+      G + +A  + + MK 
Sbjct: 571 GTIIDGYCKAKDVHKANKYLIELIKNGLRPNAVIYNALIGGYGRNGSISDAIGVLDTMK- 629

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
            +  +P   +Y +++      G V+ A E+F +     + + V+G T +IQ   K  +ID
Sbjct: 630 HNGIQPTPITYNSLMYWMCHAGLVEEAKEIFAQCILKNIELGVIGYTIIIQGFCKIGKID 689

Query: 486 DLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKV 525
           + V  F     R ++P+      L+     C   E+  K+
Sbjct: 690 EAVMYFKEMHYRDIRPNKMTYTTLMYAYCKCGNKEEAFKL 729



 Score = 43.9 bits (102), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 29/131 (22%), Positives = 63/131 (48%), Gaps = 3/131 (2%)

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           N L+      G ++ A ++F +M+  +   PD Y+YT M+      G +D A  +  E+ 
Sbjct: 184 NILVEALGCGGQLDLARKVFGEMRDGNAVAPDVYTYTVMIKALCRAGEIDAAFVMLAELE 243

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSE 520
             G+   V+    L+  L ++ R+++  ++ G  ++  ++P     G L++ ++     +
Sbjct: 244 RSGIQPTVVTYNVLMDALCRSGRVEEAFQLKGRMVEGRLRPSIVTFGILINGLA---RGQ 300

Query: 521 DVGKVITCLQQ 531
             G+V   LQ+
Sbjct: 301 RFGEVDAVLQE 311


>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Vitis vinifera]
          Length = 609

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 85/321 (26%), Positives = 160/321 (49%), Gaps = 3/321 (0%)

Query: 183 FPMETIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEA 241
           F    I YN  +    + G+ F+  + L  EMV+  I  + IT++ +I    R      A
Sbjct: 260 FSPSVITYNTIIDGYCKAGKMFK-ADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAA 318

Query: 242 IEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKM 301
            + FE M + GL P+ VTY+++++    +GK++E L L ++    G KP+ + ++ L   
Sbjct: 319 KKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALING 378

Query: 302 FGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD 361
           F +       R +L ++   G+ PN++ +NTL++A GKAG+   A  L   M+++G+ P+
Sbjct: 379 FCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPN 438

Query: 362 EKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFE 421
             T   LI  + +    K+A +L + M  N    D + YN L++     G   +A RL +
Sbjct: 439 VSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLD 498

Query: 422 DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
           +M       P + +Y A+++ Y   GN   A+ +   M + G   N++    LI+     
Sbjct: 499 EM-FEVGLNPSHLTYNALIDGYFREGNSTAALNVRTLMEKKGRRANIVTYNVLIKGFCNK 557

Query: 482 RRIDDLVRVFGVSIDRGVKPD 502
            ++++  R+    +++G+ P+
Sbjct: 558 GKLEEANRLLNEMLEKGLIPN 578



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/319 (26%), Positives = 153/319 (47%), Gaps = 1/319 (0%)

Query: 183 FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
           F +  +  N  + SL    +  ++E +  EM+   I ++ +T+  +I    +   F +A 
Sbjct: 190 FRLSALSCNPMLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAG 249

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
           +  E M   G  P  +TY+ I+D Y K+GK+ +  +L +  VA    P+ I F++L   F
Sbjct: 250 DVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGF 309

Query: 303 GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
               +    + V +EM+  G+QPN+V YN+L+  +   GK   A  L D+M   GL P+ 
Sbjct: 310 CRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNV 369

Query: 363 KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED 422
            T  ALI  + K +  K+A E+ + + +     + I +NTL++     G +++A  L   
Sbjct: 370 VTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDA-FLLRS 428

Query: 423 MKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKAR 482
           M L     P+  +Y  ++  +   GNV  A +L +EM   G+  +++    L+  L K  
Sbjct: 429 MMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKG 488

Query: 483 RIDDLVRVFGVSIDRGVKP 501
                VR+     + G+ P
Sbjct: 489 ETRKAVRLLDEMFEVGLNP 507



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 137/279 (49%), Gaps = 3/279 (1%)

Query: 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
            D A+E F+R    G     ++ + +L    K G++  V S+Y+  +      + + F V
Sbjct: 175 MDLALEGFDRAGDYGFRLSALSCNPMLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDV 234

Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
           +     + G +     V+++MK+ G  P+++ YNT+++   KAGK   A +L  EMV   
Sbjct: 235 VINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKR 294

Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417
           + P+E T   LI  + +      A +++E M+      + + YN+L+N     G ++EA 
Sbjct: 295 IHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEAL 354

Query: 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
            L + M      KP+  +Y A++N +     +  A E+ +++ + G+A NV+    LI  
Sbjct: 355 GLQDKMSGMGL-KPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDA 413

Query: 478 LGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLC 516
            GKA R+DD   +  + +D GV P+     CL  +V  C
Sbjct: 414 YGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCL--IVGFC 450



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 71/154 (46%), Gaps = 16/154 (10%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           +LA EM  N ++ D +TY+ ++    +     +A+   + M++ GL P  +TY+A++D Y
Sbjct: 460 KLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGY 519

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            + G     L++       G + + + ++VL K F   G  +    +L EM   G+ PN 
Sbjct: 520 FREGNSTAALNVRTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNR 579

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD 361
             Y+ L                 DEM+E G  PD
Sbjct: 580 TTYDILR----------------DEMMEKGFIPD 597



 Score = 62.4 bits (150), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 45/204 (22%), Positives = 91/204 (44%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           IT++T+I    +    D+A      M  TG+ P+  TY+ ++  + + G V+E   L + 
Sbjct: 405 ITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKE 464

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
              +G K D + +++L     + G+      +L EM  +G+ P+ + YN L++   + G 
Sbjct: 465 MEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGN 524

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
              A ++   M + G   +  T   LIK +      ++A  L   M E     +   Y+ 
Sbjct: 525 STAALNVRTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDI 584

Query: 403 LLNMCADIGLVEEAERLFEDMKLS 426
           L +   + G + + +    ++ +S
Sbjct: 585 LRDEMMEKGFIPDIDGHLYNVSIS 608


>gi|255661216|gb|ACU25777.1| pentatricopeptide repeat-containing protein [Petrea racemosa]
          Length = 426

 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 87/290 (30%), Positives = 146/290 (50%), Gaps = 1/290 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D  TYST+IT   +  LFD+A+ W ++M +  +  D V YS ++++  K     + +S++
Sbjct: 8   DRYTYSTLITHFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
            R   SG  PD +A++ +  +FG++  +   R ++ EM+  GV P+ V Y+T+L    + 
Sbjct: 68  SRLKRSGITPDLVAYNSMINVFGKAKLFKEARSLISEMRVAGVMPDTVSYSTILTMYVEN 127

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
            K   A S+F EM E     D  T   +I +YG+   AK+A  L+  MR+     + + Y
Sbjct: 128 HKFLEALSVFREMREINCLLDLTTCNIMIDVYGQLDMAKEADRLFWSMRKMGIEPNVVSY 187

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           NTLL +  D  L  EA  LF  M+  +  + +  +Y  M+ IYG     + A  L +EM 
Sbjct: 188 NTLLRVYGDAELFGEAIHLFRLMQRKN-IEQNVVTYNTMMMIYGKTLEHEKANNLIQEMQ 246

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
             G+  N +  + +I   GK  ++D    +F      GV+ D  L   ++
Sbjct: 247 NRGIEPNAITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMI 296



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 84/364 (23%), Positives = 169/364 (46%), Gaps = 6/364 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K   + P + + YN  +      + F+    L +EM    +  D ++YS
Sbjct: 60  YSKAISIFSRLKRSGITP-DLVAYNSMINVFGKAKLFKEARSLISEMRVAGVMPDTVSYS 118

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           TI+T     + F EA+  F  M +   + D  T + ++DVY +    +E   L+      
Sbjct: 119 TILTMYVENHKFLEALSVFREMREINCLLDLTTCNIMIDVYGQLDMAKEADRLFWSMRKM 178

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   ++ N+V YNT++   GK  +   A
Sbjct: 179 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKA 238

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R +   +D +LY T++  
Sbjct: 239 NNLIQEMQNRGIEPNAITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVA 298

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K     +PDN      ++I    G ++ A  +F +  + G   
Sbjct: 299 YERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATWVFRQAIDAGEVK 353

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           ++     +I    K R+  ++  VF      G  PD  +   +L+        +   +V 
Sbjct: 354 DITVFERMIDLFSKYRKYTNVGEVFEKMRGLGYFPDSNVIALVLNAYGKLHEFDKANEVY 413

Query: 527 TCLQ 530
             +Q
Sbjct: 414 MEMQ 417



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/361 (22%), Positives = 170/361 (47%), Gaps = 34/361 (9%)

Query: 198 RFGRQFQLIEQLA--NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMP 255
            FG++    + L+   +M  + +  D + YS +I  +++   + +AI  F R+ ++G+ P
Sbjct: 18  HFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGITP 77

Query: 256 DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVL 315
           D V Y+++++V+ K+   +E  SL      +G  PD +++S +  M+ E+  +     V 
Sbjct: 78  DLVAYNSMINVFGKAKLFKEARSLISEMRVAGVMPDTVSYSTILTMYVENHKFLEALSVF 137

Query: 316 QEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA 375
           +EM+ +    +L   N +++  G+      A  LF  M + G+ P+  +   L+++YG A
Sbjct: 138 REMREINCLLDLTTCNIMIDVYGQLDMAKEADRLFWSMRKMGIEPNVVSYNTLLRVYGDA 197

Query: 376 RWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYS 435
               +A+ L+  M+      + + YNT++ +       E+A  L ++M+ +   +P+  +
Sbjct: 198 ELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANNLIQEMQ-NRGIEPNAIT 256

Query: 436 YTAMLNIYGSGGNVDNAIELFEEMSELGVAIN-VMGCTCL-------------------- 474
           Y+ +++I+G  G +D A  LF+++   GV I+ V+  T +                    
Sbjct: 257 YSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHELK 316

Query: 475 ----------IQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGK 524
                     I  L  A RI++   VF  +ID G   D  +   ++ + S      +VG+
Sbjct: 317 RPDNIPRDTAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMIDLFSKYRKYTNVGE 376

Query: 525 V 525
           V
Sbjct: 377 V 377



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 124/261 (47%), Gaps = 1/261 (0%)

Query: 252 GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGI 311
            L PD  TYS ++  + K G  ++ LS  ++        D + +S L ++  +  DY   
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 312 RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371
             +   +K  G+ P+LV YN+++   GKA     ARSL  EM  +G+ PD  + + ++ +
Sbjct: 64  ISIFSRLKRSGITPDLVAYNSMINVFGKAKLFKEARSLISEMRVAGVMPDTVSYSTILTM 123

Query: 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
           Y +     +AL ++  MRE    +D    N ++++   + + +EA+RLF  M+     +P
Sbjct: 124 YVENHKFLEALSVFREMREINCLLDLTTCNIMIDVYGQLDMAKEADRLFWSMRKMG-IEP 182

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           +  SY  +L +YG       AI LF  M    +  NV+    ++   GK    +    + 
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANNLI 242

Query: 492 GVSIDRGVKPDDRLCGCLLSV 512
               +RG++P+      ++S+
Sbjct: 243 QEMQNRGIEPNAITYSTIISI 263



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 100/244 (40%), Gaps = 36/244 (14%)

Query: 290 PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSL 349
           PD   +S L   FG+ G +D     LQ+M+   V  +LV+Y+ L+E   K      A S+
Sbjct: 7   PDRYTYSTLITHFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66

Query: 350 FDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCAD 409
           F  +  SG+TPD                                    + YN+++N+   
Sbjct: 67  FSRLKRSGITPD-----------------------------------LVAYNSMINVFGK 91

Query: 410 IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVM 469
             L +EA  L  +M+++    PD  SY+ +L +Y        A+ +F EM E+   +++ 
Sbjct: 92  AKLFKEARSLISEMRVAG-VMPDTVSYSTILTMYVENHKFLEALSVFREMREINCLLDLT 150

Query: 470 GCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCL 529
            C  +I   G+     +  R+F      G++P+      LL V    E   +   +   +
Sbjct: 151 TCNIMIDVYGQLDMAKEADRLFWSMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLM 210

Query: 530 QQAN 533
           Q+ N
Sbjct: 211 QRKN 214



 Score = 72.8 bits (177), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 54/246 (21%), Positives = 111/246 (45%), Gaps = 31/246 (12%)

Query: 218 IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL 277
           IE + ++Y+T++       LF EAI  F  M +  +  + VTY+ ++ +Y K+ + E+  
Sbjct: 180 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKAN 239

Query: 278 SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
           +L +     G +P+ I +S +  ++G+ G  D    + Q+++S GV+ + V+Y T++ A 
Sbjct: 240 NLIQEMQNRGIEPNAITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAY 299

Query: 338 GKAGKPGLARSLFDEM-------------------------------VESGLTPDEKTLT 366
            +AG    A+ L  E+                               +++G   D     
Sbjct: 300 ERAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFE 359

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
            +I ++ K R   +  E++E+MR   +  D  +   +LN    +   ++A  ++ +M+  
Sbjct: 360 RMIDLFSKYRKYTNVGEVFEKMRGLGYFPDSNVIALVLNAYGKLHEFDKANEVYMEMQDE 419

Query: 427 DYCKPD 432
               PD
Sbjct: 420 GCVFPD 425



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 50/242 (20%), Positives = 103/242 (42%), Gaps = 5/242 (2%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           P+  +    L +    + + ++   F  ++ +N+     + YN  M       + +    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNI-EQNVVTYNTMMMIYGKTLEHEKANN 240

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  EM +  IE + ITYSTII+   +    D A   F+++  +G+  D+V Y  ++  Y 
Sbjct: 241 LIQEMQNRGIEPNAITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYE 300

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           ++G V       +R +    +PD I       +   +G  +   +V ++    G   ++ 
Sbjct: 301 RAGLVAHA----KRLLHELKRPDNIPRDTAIHILAGAGRIEEATWVFRQAIDAGEVKDIT 356

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
           V+  +++   K  K      +F++M   G  PD   +  ++  YGK      A E++  M
Sbjct: 357 VFERMIDLFSKYRKYTNVGEVFEKMRGLGYFPDSNVIALVLNAYGKLHEFDKANEVYMEM 416

Query: 389 RE 390
           ++
Sbjct: 417 QD 418


>gi|449465242|ref|XP_004150337.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
           mitochondrial-like [Cucumis sativus]
          Length = 690

 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 94/340 (27%), Positives = 164/340 (48%), Gaps = 17/340 (5%)

Query: 169 KSYFFFNWIKSQNLFPME---TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITY 225
           +SY  F  +K ++  P E   TI   +T K  R      L E    EM++     + I Y
Sbjct: 292 RSYKVFKDMKLKHCNPDEYTYTIMIRMTGKMGRAEESLALFE----EMLTKGCTPNLIAY 347

Query: 226 STIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY---AKSGKVEEVLSLYER 282
           +T+I    +  + D+AI  F  M K    P+E TYS IL+V     + G+++EVL +  +
Sbjct: 348 NTMIQALSKSGMVDKAILLFCNMIKNNCRPNEFTYSIILNVLVAEGQLGRLDEVLEVSNK 407

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
            +          ++ L +   + G       +   M S     +   Y ++LE++ + GK
Sbjct: 408 FINKS------IYAYLVRTLSKLGHSSEAHRLFCNMWSFHDGGDRDAYISMLESLCRGGK 461

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
              A  L  ++ E G++ D      ++   GK +      +L+E+M+++    D   YN 
Sbjct: 462 TVEAIELLSKVHEKGISTDTMMYNTVLSTLGKLKQVSHLHDLYEKMKQDGPFPDIFTYNI 521

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
           L++    +G V+EA  +FE+++ SD CKPD  SY +++N  G  G+VD A   F EM + 
Sbjct: 522 LISSLGRVGKVKEAVEVFEELESSD-CKPDIISYNSLINCLGKNGDVDEAHMRFLEMQDK 580

Query: 463 GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           G+  +V+  + LI+C GK  +++    +F   I +G  P+
Sbjct: 581 GLNPDVVTYSTLIECFGKTDKVEMARSLFDRMITQGCCPN 620



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 108/206 (52%), Gaps = 1/206 (0%)

Query: 198 RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDE 257
           R G+  + IE L +++    I  D + Y+T+++   +        + +E+M + G  PD 
Sbjct: 458 RGGKTVEAIE-LLSKVHEKGISTDTMMYNTVLSTLGKLKQVSHLHDLYEKMKQDGPFPDI 516

Query: 258 VTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQE 317
            TY+ ++    + GKV+E + ++E   +S  KPD I+++ L    G++GD D       E
Sbjct: 517 FTYNILISSLGRVGKVKEAVEVFEELESSDCKPDIISYNSLINCLGKNGDVDEAHMRFLE 576

Query: 318 MKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARW 377
           M+  G+ P++V Y+TL+E  GK  K  +ARSLFD M+  G  P+  T   L+    +A  
Sbjct: 577 MQDKGLNPDVVTYSTLIECFGKTDKVEMARSLFDRMITQGCCPNIVTYNILLDCLERAGR 636

Query: 378 AKDALELWERMRENKWPMDFILYNTL 403
             + ++L+ ++RE     D I Y  L
Sbjct: 637 TAETVDLYAKLREQGLTPDSITYAIL 662



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 137/323 (42%), Gaps = 33/323 (10%)

Query: 212 EMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG 271
           EM S   +LD   Y+ ++    +    D + + F+ M      PDE TY+ ++ +  K G
Sbjct: 264 EMWSKGYQLDIFAYNMLLDALAKDEQLDRSYKVFKDMKLKHCNPDEYTYTIMIRMTGKMG 323

Query: 272 KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN----- 326
           + EE L+L+E  +  G  P+ IA++ + +   +SG  D    +   M     +PN     
Sbjct: 324 RAEESLALFEEMLTKGCTPNLIAYNTMIQALSKSGMVDKAILLFCNMIKNNCRPNEFTYS 383

Query: 327 -----LV----------------------VYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
                LV                      +Y  L+  + K G    A  LF  M      
Sbjct: 384 IILNVLVAEGQLGRLDEVLEVSNKFINKSIYAYLVRTLSKLGHSSEAHRLFCNMWSFHDG 443

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
            D     ++++   +     +A+EL  ++ E     D ++YNT+L+    +  V     L
Sbjct: 444 GDRDAYISMLESLCRGGKTVEAIELLSKVHEKGISTDTMMYNTVLSTLGKLKQVSHLHDL 503

Query: 420 FEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479
           +E MK  D   PD ++Y  +++  G  G V  A+E+FEE+       +++    LI CLG
Sbjct: 504 YEKMK-QDGPFPDIFTYNILISSLGRVGKVKEAVEVFEELESSDCKPDIISYNSLINCLG 562

Query: 480 KARRIDDLVRVFGVSIDRGVKPD 502
           K   +D+    F    D+G+ PD
Sbjct: 563 KNGDVDEAHMRFLEMQDKGLNPD 585



 Score =  103 bits (256), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 158/332 (47%), Gaps = 12/332 (3%)

Query: 217 EIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV 276
           ++ L+  TY  ++    R    D A   +  M+  G   D   Y+ +LD  AK  +++  
Sbjct: 234 DLRLNAYTYRCLLQAHIRSRDSDRAFNVYMEMWSKGYQLDIFAYNMLLDALAKDEQLDRS 293

Query: 277 LSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA 336
             +++        PD   ++++ +M G+ G  +    + +EM + G  PNL+ YNT+++A
Sbjct: 294 YKVFKDMKLKHCNPDEYTYTIMIRMTGKMGRAEESLALFEEMLTKGCTPNLIAYNTMIQA 353

Query: 337 MGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIY---GKARWAKDALELWERMRENKW 393
           + K+G    A  LF  M+++   P+E T + ++ +    G+     + LE+      NK+
Sbjct: 354 LSKSGMVDKAILLFCNMIKNNCRPNEFTYSIILNVLVAEGQLGRLDEVLEV-----SNKF 408

Query: 394 PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAI 453
            ++  +Y  L+   + +G   EA RLF +M  S +   D  +Y +ML     GG    AI
Sbjct: 409 -INKSIYAYLVRTLSKLGHSSEAHRLFCNM-WSFHDGGDRDAYISMLESLCRGGKTVEAI 466

Query: 454 ELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVV 513
           EL  ++ E G++ + M    ++  LGK +++  L  ++      G  PD      L+S +
Sbjct: 467 ELLSKVHEKGISTDTMMYNTVLSTLGKLKQVSHLHDLYEKMKQDGPFPDIFTYNILISSL 526

Query: 514 SLCETSEDVGKVITCLQQAN--PKLVAFLNLI 543
                 ++  +V   L+ ++  P ++++ +LI
Sbjct: 527 GRVGKVKEAVEVFEELESSDCKPDIISYNSLI 558



 Score = 97.4 bits (241), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 102/209 (48%), Gaps = 2/209 (0%)

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           EAIE   ++++ G+  D + Y+ +L    K  +V  +  LYE+    G  PD   +++L 
Sbjct: 464 EAIELLSKVHEKGISTDTMMYNTVLSTLGKLKQVSHLHDLYEKMKQDGPFPDIFTYNILI 523

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
              G  G       V +E++S   +P+++ YN+L+  +GK G    A   F EM + GL 
Sbjct: 524 SSLGRVGKVKEAVEVFEELESSDCKPDIISYNSLINCLGKNGDVDEAHMRFLEMQDKGLN 583

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
           PD  T + LI+ +GK    + A  L++RM       + + YN LL+     G   E   L
Sbjct: 584 PDVVTYSTLIECFGKTDKVEMARSLFDRMITQGCCPNIVTYNILLDCLERAGRTAETVDL 643

Query: 420 FEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
           +  ++      PD+ +Y A+L+   SG N
Sbjct: 644 YAKLR-EQGLTPDSITY-AILDRLQSGSN 670



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 94/186 (50%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           +T+ YN  + +L   +Q   +  L  +M  +    D  TY+ +I+   R     EA+E F
Sbjct: 480 DTMMYNTVLSTLGKLKQVSHLHDLYEKMKQDGPFPDIFTYNILISSLGRVGKVKEAVEVF 539

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           E +  +   PD ++Y+++++   K+G V+E    +      G  PD + +S L + FG++
Sbjct: 540 EELESSDCKPDIISYNSLINCLGKNGDVDEAHMRFLEMQDKGLNPDVVTYSTLIECFGKT 599

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
              +  R +   M + G  PN+V YN LL+ + +AG+      L+ ++ E GLTPD  T 
Sbjct: 600 DKVEMARSLFDRMITQGCCPNIVTYNILLDCLERAGRTAETVDLYAKLREQGLTPDSITY 659

Query: 366 TALIKI 371
             L ++
Sbjct: 660 AILDRL 665



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 77/334 (23%), Positives = 140/334 (41%), Gaps = 47/334 (14%)

Query: 172 FFFNWIKSQNLFPME---TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
            F N IK+ N  P E   +I  NV +   + GR  +++E ++N+ ++  I      Y+ +
Sbjct: 366 LFCNMIKN-NCRPNEFTYSIILNVLVAEGQLGRLDEVLE-VSNKFINKSI------YAYL 417

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
           +    +     EA   F  M+      D   Y ++L+   + GK  E + L  +    G 
Sbjct: 418 VRTLSKLGHSSEAHRLFCNMWSFHDGGDRDAYISMLESLCRGGKTVEAIELLSKVHEKGI 477

Query: 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348
             D + ++ +    G+      +  + ++MK  G  P++  YN L+ ++G+ GK   A  
Sbjct: 478 STDTMMYNTVLSTLGKLKQVSHLHDLYEKMKQDGPFPDIFTYNILISSLGRVGKVKEAVE 537

Query: 349 LFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCA 408
           +F+E+  S   P                                   D I YN+L+N   
Sbjct: 538 VFEELESSDCKP-----------------------------------DIISYNSLINCLG 562

Query: 409 DIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINV 468
             G V+EA   F +M+      PD  +Y+ ++  +G    V+ A  LF+ M   G   N+
Sbjct: 563 KNGDVDEAHMRFLEMQ-DKGLNPDVVTYSTLIECFGKTDKVEMARSLFDRMITQGCCPNI 621

Query: 469 MGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           +    L+ CL +A R  + V ++    ++G+ PD
Sbjct: 622 VTYNILLDCLERAGRTAETVDLYAKLREQGLTPD 655



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 68/280 (24%), Positives = 120/280 (42%), Gaps = 22/280 (7%)

Query: 233 KRCNLFDEAIEWFERMYKTGLMP----DEVTYSAILDVYA------KSGKVEEVLSLYER 282
           K  N  D A+++F R   + L P    D  TYS IL + +      +  +V E+LS  +R
Sbjct: 143 KSLNSPDLALQFFHRC--SSLCPKFRHDAFTYSRILLMLSHSSSSKRIDQVREILSQMDR 200

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
               G        ++L K+F  + D   +      +K   ++ N   Y  LL+A  ++  
Sbjct: 201 DQIRGTIS---TVNILIKIFSSNED---LELCTGLIKKWDLRLNAYTYRCLLQAHIRSRD 254

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
              A +++ EM   G   D      L+    K      + ++++ M+      D   Y  
Sbjct: 255 SDRAFNVYMEMWSKGYQLDIFAYNMLLDALAKDEQLDRSYKVFKDMKLKHCNPDEYTYTI 314

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
           ++ M   +G  EE+  LFE+M L+  C P+  +Y  M+      G VD AI LF  M + 
Sbjct: 315 MIRMTGKMGRAEESLALFEEM-LTKGCTPNLIAYNTMIQALSKSGMVDKAILLFCNMIKN 373

Query: 463 GVAINVMGCTCLIQCL---GKARRIDDLVRVFGVSIDRGV 499
               N    + ++  L   G+  R+D+++ V    I++ +
Sbjct: 374 NCRPNEFTYSIILNVLVAEGQLGRLDEVLEVSNKFINKSI 413


>gi|449507908|ref|XP_004163164.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
           mitochondrial-like [Cucumis sativus]
          Length = 685

 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 94/340 (27%), Positives = 164/340 (48%), Gaps = 17/340 (5%)

Query: 169 KSYFFFNWIKSQNLFPME---TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITY 225
           +SY  F  +K ++  P E   TI   +T K  R      L E    EM++     + I Y
Sbjct: 287 RSYKVFKDMKLKHCNPDEYTYTIMIRMTGKMGRAEESLALFE----EMLTKGCTPNLIAY 342

Query: 226 STIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY---AKSGKVEEVLSLYER 282
           +T+I    +  + D+AI  F  M K    P+E TYS IL+V     + G+++EVL +  +
Sbjct: 343 NTMIQALSKSGMVDKAILLFCNMIKNNCRPNEFTYSIILNVLVAEGQLGRLDEVLEVSNK 402

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
            +          ++ L +   + G       +   M S     +   Y ++LE++ + GK
Sbjct: 403 FINKS------IYAYLVRTLSKLGHSSEAHRLFCNMWSFHDGGDRDAYISMLESLCRGGK 456

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
              A  L  ++ E G++ D      ++   GK +      +L+E+M+++    D   YN 
Sbjct: 457 TVEAIELLSKVHEKGISTDTMMYNTVLSTLGKLKQVSHLHDLYEKMKQDGPFPDIFTYNI 516

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
           L++    +G V+EA  +FE+++ SD CKPD  SY +++N  G  G+VD A   F EM + 
Sbjct: 517 LISSLGRVGKVKEAVEVFEELESSD-CKPDIISYNSLINCLGKNGDVDEAHMRFLEMQDK 575

Query: 463 GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           G+  +V+  + LI+C GK  +++    +F   I +G  P+
Sbjct: 576 GLNPDVVTYSTLIECFGKTDKVEMARSLFDRMITQGCCPN 615



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 108/206 (52%), Gaps = 1/206 (0%)

Query: 198 RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDE 257
           R G+  + IE L +++    I  D + Y+T+++   +        + +E+M + G  PD 
Sbjct: 453 RGGKTVEAIE-LLSKVHEKGISTDTMMYNTVLSTLGKLKQVSHLHDLYEKMKQDGPFPDI 511

Query: 258 VTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQE 317
            TY+ ++    + GKV+E + ++E   +S  KPD I+++ L    G++GD D       E
Sbjct: 512 FTYNILISSLGRVGKVKEAVEVFEELESSDCKPDIISYNSLINCLGKNGDVDEAHMRFLE 571

Query: 318 MKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARW 377
           M+  G+ P++V Y+TL+E  GK  K  +ARSLFD M+  G  P+  T   L+    +A  
Sbjct: 572 MQDKGLNPDVVTYSTLIECFGKTDKVEMARSLFDRMITQGCCPNIVTYNILLDCLERAGR 631

Query: 378 AKDALELWERMRENKWPMDFILYNTL 403
             + ++L+ ++RE     D I Y  L
Sbjct: 632 TAETVDLYAKLREQGLTPDSITYAIL 657



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 81/323 (25%), Positives = 138/323 (42%), Gaps = 33/323 (10%)

Query: 212 EMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG 271
           EM SN  +LD   Y+ ++    +    D + + F+ M      PDE TY+ ++ +  K G
Sbjct: 259 EMWSNGYQLDIFAYNMLLDALAKDEQLDRSYKVFKDMKLKHCNPDEYTYTIMIRMTGKMG 318

Query: 272 KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN----- 326
           + EE L+L+E  +  G  P+ IA++ + +   +SG  D    +   M     +PN     
Sbjct: 319 RAEESLALFEEMLTKGCTPNLIAYNTMIQALSKSGMVDKAILLFCNMIKNNCRPNEFTYS 378

Query: 327 -----LV----------------------VYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
                LV                      +Y  L+  + K G    A  LF  M      
Sbjct: 379 IILNVLVAEGQLGRLDEVLEVSNKFINKSIYAYLVRTLSKLGHSSEAHRLFCNMWSFHDG 438

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
            D     ++++   +     +A+EL  ++ E     D ++YNT+L+    +  V     L
Sbjct: 439 GDRDAYISMLESLCRGGKTVEAIELLSKVHEKGISTDTMMYNTVLSTLGKLKQVSHLHDL 498

Query: 420 FEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479
           +E MK  D   PD ++Y  +++  G  G V  A+E+FEE+       +++    LI CLG
Sbjct: 499 YEKMK-QDGPFPDIFTYNILISSLGRVGKVKEAVEVFEELESSDCKPDIISYNSLINCLG 557

Query: 480 KARRIDDLVRVFGVSIDRGVKPD 502
           K   +D+    F    D+G+ PD
Sbjct: 558 KNGDVDEAHMRFLEMQDKGLNPD 580



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 158/332 (47%), Gaps = 12/332 (3%)

Query: 217 EIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV 276
           ++ L+  TY  ++    R    D A   +  M+  G   D   Y+ +LD  AK  +++  
Sbjct: 229 DLRLNAYTYRCLLQAHIRSRDSDRAFNVYMEMWSNGYQLDIFAYNMLLDALAKDEQLDRS 288

Query: 277 LSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA 336
             +++        PD   ++++ +M G+ G  +    + +EM + G  PNL+ YNT+++A
Sbjct: 289 YKVFKDMKLKHCNPDEYTYTIMIRMTGKMGRAEESLALFEEMLTKGCTPNLIAYNTMIQA 348

Query: 337 MGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIY---GKARWAKDALELWERMRENKW 393
           + K+G    A  LF  M+++   P+E T + ++ +    G+     + LE+      NK+
Sbjct: 349 LSKSGMVDKAILLFCNMIKNNCRPNEFTYSIILNVLVAEGQLGRLDEVLEV-----SNKF 403

Query: 394 PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAI 453
            ++  +Y  L+   + +G   EA RLF +M  S +   D  +Y +ML     GG    AI
Sbjct: 404 -INKSIYAYLVRTLSKLGHSSEAHRLFCNM-WSFHDGGDRDAYISMLESLCRGGKTVEAI 461

Query: 454 ELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVV 513
           EL  ++ E G++ + M    ++  LGK +++  L  ++      G  PD      L+S +
Sbjct: 462 ELLSKVHEKGISTDTMMYNTVLSTLGKLKQVSHLHDLYEKMKQDGPFPDIFTYNILISSL 521

Query: 514 SLCETSEDVGKVITCLQQAN--PKLVAFLNLI 543
                 ++  +V   L+ ++  P ++++ +LI
Sbjct: 522 GRVGKVKEAVEVFEELESSDCKPDIISYNSLI 553



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 102/209 (48%), Gaps = 2/209 (0%)

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           EAIE   ++++ G+  D + Y+ +L    K  +V  +  LYE+    G  PD   +++L 
Sbjct: 459 EAIELLSKVHEKGISTDTMMYNTVLSTLGKLKQVSHLHDLYEKMKQDGPFPDIFTYNILI 518

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
              G  G       V +E++S   +P+++ YN+L+  +GK G    A   F EM + GL 
Sbjct: 519 SSLGRVGKVKEAVEVFEELESSDCKPDIISYNSLINCLGKNGDVDEAHMRFLEMQDKGLN 578

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
           PD  T + LI+ +GK    + A  L++RM       + + YN LL+     G   E   L
Sbjct: 579 PDVVTYSTLIECFGKTDKVEMARSLFDRMITQGCCPNIVTYNILLDCLERAGRTAETVDL 638

Query: 420 FEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
           +  ++      PD+ +Y A+L+   SG N
Sbjct: 639 YAKLR-EQGLTPDSITY-AILDRLQSGSN 665



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 94/186 (50%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           +T+ YN  + +L   +Q   +  L  +M  +    D  TY+ +I+   R     EA+E F
Sbjct: 475 DTMMYNTVLSTLGKLKQVSHLHDLYEKMKQDGPFPDIFTYNILISSLGRVGKVKEAVEVF 534

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           E +  +   PD ++Y+++++   K+G V+E    +      G  PD + +S L + FG++
Sbjct: 535 EELESSDCKPDIISYNSLINCLGKNGDVDEAHMRFLEMQDKGLNPDVVTYSTLIECFGKT 594

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
              +  R +   M + G  PN+V YN LL+ + +AG+      L+ ++ E GLTPD  T 
Sbjct: 595 DKVEMARSLFDRMITQGCCPNIVTYNILLDCLERAGRTAETVDLYAKLREQGLTPDSITY 654

Query: 366 TALIKI 371
             L ++
Sbjct: 655 AILDRL 660



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 133/296 (44%), Gaps = 12/296 (4%)

Query: 172 FFFNWIKSQNLFPME---TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
            F N IK+ N  P E   +I  NV +   + GR  +++E ++N+ ++  I      Y+ +
Sbjct: 361 LFCNMIKN-NCRPNEFTYSIILNVLVAEGQLGRLDEVLE-VSNKFINKSI------YAYL 412

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
           +    +     EA   F  M+      D   Y ++L+   + GK  E + L  +    G 
Sbjct: 413 VRTLSKLGHSSEAHRLFCNMWSFHDGGDRDAYISMLESLCRGGKTVEAIELLSKVHEKGI 472

Query: 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348
             D + ++ +    G+      +  + ++MK  G  P++  YN L+ ++G+ GK   A  
Sbjct: 473 STDTMMYNTVLSTLGKLKQVSHLHDLYEKMKQDGPFPDIFTYNILISSLGRVGKVKEAVE 532

Query: 349 LFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCA 408
           +F+E+  S   PD  +  +LI   GK     +A   +  M++     D + Y+TL+    
Sbjct: 533 VFEELESSDCKPDIISYNSLINCLGKNGDVDEAHMRFLEMQDKGLNPDVVTYSTLIECFG 592

Query: 409 DIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
               VE A  LF+ M ++  C P+  +Y  +L+     G     ++L+ ++ E G+
Sbjct: 593 KTDKVEMARSLFDRM-ITQGCCPNIVTYNILLDCLERAGRTAETVDLYAKLREQGL 647



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 68/280 (24%), Positives = 121/280 (43%), Gaps = 22/280 (7%)

Query: 233 KRCNLFDEAIEWFERMYKTGLMP----DEVTYSAILDVYA------KSGKVEEVLSLYER 282
           K  N  D A+++F R   + L P    D  TYS IL + +      +  +V E+LS  +R
Sbjct: 138 KSLNSPDLALQFFHRC--SSLCPKFRHDAFTYSRILLMLSHSSSSKRIDQVREILSQMDR 195

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
               G        ++L K+F  + D   +      +K   ++ N   Y  LL+A  ++  
Sbjct: 196 DQIRGTIS---TVNILIKIFSSNED---LELCTGLIKKWDLRLNAYTYRCLLQAHIRSRD 249

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
              A +++ EM  +G   D      L+    K      + ++++ M+      D   Y  
Sbjct: 250 SDRAFNVYMEMWSNGYQLDIFAYNMLLDALAKDEQLDRSYKVFKDMKLKHCNPDEYTYTI 309

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
           ++ M   +G  EE+  LFE+M L+  C P+  +Y  M+      G VD AI LF  M + 
Sbjct: 310 MIRMTGKMGRAEESLALFEEM-LTKGCTPNLIAYNTMIQALSKSGMVDKAILLFCNMIKN 368

Query: 463 GVAINVMGCTCLIQCL---GKARRIDDLVRVFGVSIDRGV 499
               N    + ++  L   G+  R+D+++ V    I++ +
Sbjct: 369 NCRPNEFTYSIILNVLVAEGQLGRLDEVLEVSNKFINKSI 408


>gi|224065693|ref|XP_002301924.1| predicted protein [Populus trichocarpa]
 gi|222843650|gb|EEE81197.1| predicted protein [Populus trichocarpa]
          Length = 709

 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 143/293 (48%), Gaps = 2/293 (0%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           W+ +      +++ N+ P   +F  + + S R   ++Q   Q+  EM  + +  D I Y+
Sbjct: 392 WESARIVLKEMEASNVQPNAYVFSRI-LASYRDKGEWQKTFQVLREMEDSGVRPDRIFYN 450

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
            +I    + N  D A+  F+RM   G+ PD +T++ ++D + K+GK +    L+E  +  
Sbjct: 451 VLIDTFGKFNCLDHAMATFDRMLSEGIEPDTITWNTLVDCHCKAGKHDRAEELFEEMMEK 510

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G+ P    F+++   FG+   +D ++ +L  M+S G+ PN V Y TL++  GK+G+   A
Sbjct: 511 GYLPCNTTFNIMINSFGDQERWDDVKNLLTNMRSQGLLPNAVTYTTLIDIYGKSGRFDDA 570

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
               D+M  +GL P      AL+  Y +   +  A+  +  MR++      +  N+L+N 
Sbjct: 571 IECLDDMKAAGLKPSSTMYNALLNAYAQRGLSDQAVSAFWAMRDDGLKPSLLALNSLINA 630

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
                   EA  + + MK +D  KPD  +YT ++         D    ++EEM
Sbjct: 631 FGKDRRDVEAFVVLQYMKEND-LKPDVVTYTTLMKALILVEKFDKVPSVYEEM 682



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 79/268 (29%), Positives = 139/268 (51%), Gaps = 6/268 (2%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLA--NEMVSNEIELDNIT 224
           WQK++     ++   + P + IFYNV + +  FG+   L   +A  + M+S  IE D IT
Sbjct: 427 WQKTFQVLREMEDSGVRP-DRIFYNVLIDT--FGKFNCLDHAMATFDRMLSEGIEPDTIT 483

Query: 225 YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
           ++T++ C  +    D A E FE M + G +P   T++ +++ +    + ++V +L     
Sbjct: 484 WNTLVDCHCKAGKHDRAEELFEEMMEKGYLPCNTTFNIMINSFGDQERWDDVKNLLTNMR 543

Query: 285 ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344
           + G  P+ + ++ L  ++G+SG +D     L +MK+ G++P+  +YN LL A  + G   
Sbjct: 544 SQGLLPNAVTYTTLIDIYGKSGRFDDAIECLDDMKAAGLKPSSTMYNALLNAYAQRGLSD 603

Query: 345 LARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
            A S F  M + GL P    L +LI  +GK R   +A  + + M+EN    D + Y TL+
Sbjct: 604 QAVSAFWAMRDDGLKPSLLALNSLINAFGKDRRDVEAFVVLQYMKENDLKPDVVTYTTLM 663

Query: 405 NMCADIGLVEEAERLFEDMKLSDYCKPD 432
                +   ++   ++E+M LS  C PD
Sbjct: 664 KALILVEKFDKVPSVYEEMILSG-CTPD 690



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 96/325 (29%), Positives = 147/325 (45%), Gaps = 9/325 (2%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG---KVEEVLSLY 280
           T  T+I     C   +EA   FE M   GL P    Y+A+L  Y K+G     E V+S  
Sbjct: 308 TLVTVIWGLGNCGRTEEAEAIFEEMRDNGLQPRTRAYNALLRGYVKAGLLRDAEFVVSEM 367

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
           ER   SG  P+   +S+L   +G +  ++  R VL+EM++  VQPN  V++ +L +    
Sbjct: 368 ER---SGVLPNEQTYSLLIDAYGNAERWESARIVLKEMEASNVQPNAYVFSRILASYRDK 424

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G+      +  EM +SG+ PD      LI  +GK      A+  ++RM       D I +
Sbjct: 425 GEWQKTFQVLREMEDSGVRPDRIFYNVLIDTFGKFNCLDHAMATFDRMLSEGIEPDTITW 484

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           NTL++     G  + AE LFE+M    Y  P N ++  M+N +G     D+   L   M 
Sbjct: 485 NTLVDCHCKAGKHDRAEELFEEMMEKGYL-PCNTTFNIMINSFGDQERWDDVKNLLTNMR 543

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSE 520
             G+  N +  T LI   GK+ R DD +         G+KP   +   LL+  +    S+
Sbjct: 544 SQGLLPNAVTYTTLIDIYGKSGRFDDAIECLDDMKAAGLKPSSTMYNALLNAYAQRGLSD 603

Query: 521 DVGKVITCLQQ--ANPKLVAFLNLI 543
                   ++     P L+A  +LI
Sbjct: 604 QAVSAFWAMRDDGLKPSLLALNSLI 628



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 95/354 (26%), Positives = 156/354 (44%), Gaps = 4/354 (1%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F  ++   L P  T  YN  ++        +  E + +EM  + +  +  TYS +I   
Sbjct: 328 IFEEMRDNGLQP-RTRAYNALLRGYVKAGLLRDAEFVVSEMERSGVLPNEQTYSLLIDAY 386

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
                ++ A    + M  + + P+   +S IL  Y   G+ ++   +      SG +PD 
Sbjct: 387 GNAERWESARIVLKEMEASNVQPNAYVFSRILASYRDKGEWQKTFQVLREMEDSGVRPDR 446

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           I ++VL   FG+    D        M S G++P+ + +NTL++   KAGK   A  LF+E
Sbjct: 447 IFYNVLIDTFGKFNCLDHAMATFDRMLSEGIEPDTITWNTLVDCHCKAGKHDRAEELFEE 506

Query: 353 MVESGLTPDEKTLTALIKIYG-KARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411
           M+E G  P   T   +I  +G + RW  D   L   MR      + + Y TL+++    G
Sbjct: 507 MMEKGYLPCNTTFNIMINSFGDQERW-DDVKNLLTNMRSQGLLPNAVTYTTLIDIYGKSG 565

Query: 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC 471
             ++A    +DMK +   KP +  Y A+LN Y   G  D A+  F  M + G+  +++  
Sbjct: 566 RFDDAIECLDDMKAAG-LKPSSTMYNALLNAYAQRGLSDQAVSAFWAMRDDGLKPSLLAL 624

Query: 472 TCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKV 525
             LI   GK RR  +   V     +  +KPD      L+  + L E  + V  V
Sbjct: 625 NSLINAFGKDRRDVEAFVVLQYMKENDLKPDVVTYTTLMKALILVEKFDKVPSV 678



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 140/295 (47%), Gaps = 1/295 (0%)

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
           E +  EM  N ++     Y+ ++    +  L  +A      M ++G++P+E TYS ++D 
Sbjct: 326 EAIFEEMRDNGLQPRTRAYNALLRGYVKAGLLRDAEFVVSEMERSGVLPNEQTYSLLIDA 385

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
           Y  + + E    + +   AS  +P+   FS +   + + G++     VL+EM+  GV+P+
Sbjct: 386 YGNAERWESARIVLKEMEASNVQPNAYVFSRILASYRDKGEWQKTFQVLREMEDSGVRPD 445

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
            + YN L++  GK      A + FD M+  G+ PD  T   L+  + KA     A EL+E
Sbjct: 446 RIFYNVLIDTFGKFNCLDHAMATFDRMLSEGIEPDTITWNTLVDCHCKAGKHDRAEELFE 505

Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
            M E  +      +N ++N   D    ++ + L  +M+ S    P+  +YT +++IYG  
Sbjct: 506 EMMEKGYLPCNTTFNIMINSFGDQERWDDVKNLLTNMR-SQGLLPNAVTYTTLIDIYGKS 564

Query: 447 GNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
           G  D+AIE  ++M   G+  +      L+    +    D  V  F    D G+KP
Sbjct: 565 GRFDDAIECLDDMKAAGLKPSSTMYNALLNAYAQRGLSDQAVSAFWAMRDDGLKP 619



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 110/481 (22%), Positives = 201/481 (41%), Gaps = 56/481 (11%)

Query: 170 SYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTII 229
           +Y   +W++  NL     + Y++ + +L  G+  +L E     ++S +  L  +TY+ +I
Sbjct: 152 AYAVVSWLQKHNLCFSYELLYSILIHAL--GQSEKLYEAF---LLSQKQNLTPLTYNALI 206

Query: 230 TCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAIL------------------------- 264
           +   R N  ++A+    RM + G   D V YS I+                         
Sbjct: 207 SACARNNDIEKALNLICRMREDGYPSDLVNYSLIIRSLMKNNRANSSILQKIYREIDRDK 266

Query: 265 ---DV---------YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIR 312
              DV         +AK+G +++ L        SG          +    G  G  +   
Sbjct: 267 LEVDVQLWNDIIVGFAKAGDLDKALEFLGVVQGSGLSVKTATLVTVIWGLGNCGRTEEAE 326

Query: 313 YVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIY 372
            + +EM+  G+QP    YN LL    KAG    A  +  EM  SG+ P+E+T + LI  Y
Sbjct: 327 AIFEEMRDNGLQPRTRAYNALLRGYVKAGLLRDAEFVVSEMERSGVLPNEQTYSLLIDAY 386

Query: 373 GKA-RWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
           G A RW    + L E    N  P  ++ ++ +L    D G  ++  ++  +M+ S   +P
Sbjct: 387 GNAERWESARIVLKEMEASNVQPNAYV-FSRILASYRDKGEWQKTFQVLREMEDSG-VRP 444

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           D   Y  +++ +G    +D+A+  F+ M   G+  + +    L+ C  KA + D    +F
Sbjct: 445 DRIFYNVLIDTFGKFNCLDHAMATFDRMLSEGIEPDTITWNTLVDCHCKAGKHDRAEELF 504

Query: 492 GVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAFLNLIE--DNS 547
              +++G  P +     +++     E  +DV  ++T ++     P  V +  LI+    S
Sbjct: 505 EEMMEKGYLPCNTTFNIMINSFGDQERWDDVKNLLTNMRSQGLLPNAVTYTTLIDIYGKS 564

Query: 548 TGFENIKEEFRNVIKDTEVDARRP---FCNCLIDICRNRNLNERAHELLYLGTLYGLYPG 604
             F++  E     + D +    +P     N L++    R L+++A    +     GL P 
Sbjct: 565 GRFDDAIE----CLDDMKAAGLKPSSTMYNALLNAYAQRGLSDQAVSAFWAMRDDGLKPS 620

Query: 605 L 605
           L
Sbjct: 621 L 621



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 96/196 (48%), Gaps = 1/196 (0%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F  +  +   P  T F N+ + S     ++  ++ L   M S  +  + +TY+T+I   
Sbjct: 503 LFEEMMEKGYLPCNTTF-NIMINSFGDQERWDDVKNLLTNMRSQGLLPNAVTYTTLIDIY 561

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +   FD+AIE  + M   GL P    Y+A+L+ YA+ G  ++ +S +      G KP  
Sbjct: 562 GKSGRFDDAIECLDDMKAAGLKPSSTMYNALLNAYAQRGLSDQAVSAFWAMRDDGLKPSL 621

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           +A + L   FG+         VLQ MK   ++P++V Y TL++A+    K     S+++E
Sbjct: 622 LALNSLINAFGKDRRDVEAFVVLQYMKENDLKPDVVTYTTLMKALILVEKFDKVPSVYEE 681

Query: 353 MVESGLTPDEKTLTAL 368
           M+ SG TPD K    L
Sbjct: 682 MILSGCTPDRKARAML 697


>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 762

 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 92/345 (26%), Positives = 165/345 (47%), Gaps = 6/345 (1%)

Query: 175 NWIKSQNLFPMETIFYNVTMKSLRFGRQFQLI--EQLANEMVSNEIELDNITYSTIITCA 232
           N  KS    P   + YN  + ++   R    +  E++  EM+ + +  +  TY+ +I   
Sbjct: 166 NLAKSSGFMP-GVLSYNSVLDAIVRSRGSVKLSAEEVYREMIRSRVSPNVYTYNILIRGF 224

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
                  + +  F  M + G +P+ VTY+ ++D Y K G+++E   L +   + G +P+ 
Sbjct: 225 CSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNL 284

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           I+++V+       G       +L+EM   G  P+ V YNTLL    K G    A  +  E
Sbjct: 285 ISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAE 344

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           MV +G++P   T TALI    KAR    A+E +++MR      +   Y TL++  +  GL
Sbjct: 345 MVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGL 404

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
           + EA R+  +M  S +  P   +Y A ++ +     ++ A+ + +EM E G+A +V+  +
Sbjct: 405 LNEAYRILNEMTESGF-SPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYS 463

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCE 517
            +I    +   +D   ++    +++GV PD      L+    LCE
Sbjct: 464 TIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQ--GLCE 506



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 102/391 (26%), Positives = 172/391 (43%), Gaps = 40/391 (10%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIE--QLANEMVSNEIELDNITYSTIIT 230
           FF+ ++ + L P E  +  +      F RQ  L E  ++ NEM  +      +TY+  I 
Sbjct: 376 FFDQMRIRGLRPNERTYTTLIDG---FSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIH 432

Query: 231 CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
                   +EA+   + M + GL PD V+YS I+  + + G+++    + +  V  G  P
Sbjct: 433 GHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSP 492

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
           D + +S L +   E         + QEM  +G+ P+   Y TL+ A    G    A  L 
Sbjct: 493 DAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLH 552

Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALEL-WERMRENKWPMDFILYNTLLNMCAD 409
           DEM+  G  PD  T + LI    K    ++A  L ++ + E   P D + Y+TL+  C++
Sbjct: 553 DEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSD-VTYDTLIENCSN 611

Query: 410 I---------------GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIE 454
           I               GL+ EA+R+FE M   ++ KP    Y  +++ +  GGN+  A  
Sbjct: 612 IEFKSVVALIKGFCMKGLMHEADRVFESMVERNH-KPGEAVYNVIIHGHCRGGNLPKAFN 670

Query: 455 LFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVS 514
           L++EM   G   + +    LI+ L K    +++  V G          D L  C L+   
Sbjct: 671 LYKEMIHSGFVPHTVTVITLIKALFKEGMNEEMSEVIG----------DTLRSCRLN--- 717

Query: 515 LCETSEDVGKVITCLQQANPKLVAFLNLIED 545
                 ++ KV+  +      + A LN++ D
Sbjct: 718 ----EAELAKVLVEINHKEGNMEAVLNVLTD 744



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 148/332 (44%), Gaps = 3/332 (0%)

Query: 174 FNWIKSQNLFPME--TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITC 231
           F  +KS +   M+   I YNV +  L      +   ++  EM       D +TY+T++  
Sbjct: 269 FGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNG 328

Query: 232 AKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291
             +   F +A+     M + G+ P  VTY+A+++   K+  +   +  +++    G +P+
Sbjct: 329 YCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPN 388

Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
              ++ L   F   G  +    +L EM   G  P++V YN  +       +   A  +  
Sbjct: 389 ERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQ 448

Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411
           EMVE GL PD  + + +I  + +      A ++ + M E     D + Y++L+    ++ 
Sbjct: 449 EMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMR 508

Query: 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC 471
            + EA  L ++M L     PD ++YT ++N Y   G+++ A+ L +EM   G   + +  
Sbjct: 509 RLTEACDLSQEM-LDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTY 567

Query: 472 TCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
           + LI  L K  R  +  R+    I     P D
Sbjct: 568 SVLINGLNKQARTREAKRLLFKLIYEESVPSD 599



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 127/283 (44%), Gaps = 9/283 (3%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS-GKV----EEVLS 278
            +  ++      N+ D+A+        +G MP  ++Y+++LD   +S G V    EEV  
Sbjct: 144 VFDLMVKSYSHLNMIDQAVNTINLAKSSGFMPGVLSYNSVLDAIVRSRGSVKLSAEEV-- 201

Query: 279 LYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMG 338
            Y   + S   P+   +++L + F   G+         EM+  G  PN+V YNTL++A  
Sbjct: 202 -YREMIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYC 260

Query: 339 KAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFI 398
           K G+   A  L   M   G+ P+  +   +I    +    K+A E+ E M    +  D +
Sbjct: 261 KMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEV 320

Query: 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458
            YNTLLN     G   +A  +  +M + +   P   +YTA++N      N++ A+E F++
Sbjct: 321 TYNTLLNGYCKEGNFHQALVIHAEM-VRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQ 379

Query: 459 MSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
           M   G+  N    T LI    +   +++  R+     + G  P
Sbjct: 380 MRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSP 422


>gi|125559559|gb|EAZ05095.1| hypothetical protein OsI_27286 [Oryza sativa Indica Group]
          Length = 551

 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 87/322 (27%), Positives = 150/322 (46%), Gaps = 1/322 (0%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           Y + +  L   R    +E +  EM S  +  D   YS++I    R      A E F+   
Sbjct: 216 YTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNVRRASEVFDECV 275

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
             G+ P+E TY A+++ + K G++E    L       G   + I F+ +   +      D
Sbjct: 276 GNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMIDGYCRKNMVD 335

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               +   M+ +G++ ++  YNTL   + +A +   A++L   M+E G+ P+  + T LI
Sbjct: 336 KALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMIEKGVRPNHVSYTTLI 395

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
            I+       +A  L+  M  N      + YN +++     G + EAER  ++M+     
Sbjct: 396 SIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERFKKEMEKKGLV 455

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
            PD YSY A+++ +   G VD A+ LFEEM + G   N++  T LI  L K  R ++  +
Sbjct: 456 -PDIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLVAYTALISGLAKEGRSEEAFQ 514

Query: 490 VFGVSIDRGVKPDDRLCGCLLS 511
           ++   +  G+ PDD L   L+ 
Sbjct: 515 LYDNMLGDGLTPDDALYSALVG 536



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 125/261 (47%), Gaps = 4/261 (1%)

Query: 255 PDEVT---YSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGI 311
           PD VT    S ++D Y KSG+V     L +     G K + + ++ L   +    D D +
Sbjct: 138 PDSVTPLSASVVVDGYCKSGRVAHARQLLDEMPRHGVKVNALCYNSLLDAYTREKDDDRV 197

Query: 312 RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371
             +L+ M++ G++P +  Y  L++ +  A       ++F+EM    L+ D    +++I  
Sbjct: 198 AEMLKVMENEGIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINA 257

Query: 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
           Y +A   + A E+++    N    +   Y  L+N    IG +E AE L  DM++      
Sbjct: 258 YCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRG-VGI 316

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           +   +  M++ Y     VD A+E+   M ++G+ ++V     L   L +A R+D+   + 
Sbjct: 317 NQIVFNTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLL 376

Query: 492 GVSIDRGVKPDDRLCGCLLSV 512
            + I++GV+P+      L+S+
Sbjct: 377 RIMIEKGVRPNHVSYTTLISI 397


>gi|255661190|gb|ACU25764.1| pentatricopeptide repeat-containing protein [Dipyrena glaberrima]
          Length = 426

 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 87/290 (30%), Positives = 148/290 (51%), Gaps = 1/290 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D  TYST+IT   +  LFD A+ W ++M +  +  D V YS ++++  K     + +S++
Sbjct: 8   DRYTYSTLITHFGKEGLFDAALAWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
            R   SG+ PD +A++ +  +FG++  +   R ++ EM++ GV PN V Y+TLL    + 
Sbjct: 68  SRLKRSGFSPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTVSYSTLLTMYVEN 127

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
            K   A ++F EM E     D  T   +I +YG+   AK+A +L+  MR+     + + Y
Sbjct: 128 KKFLEALTVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSY 187

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           NTLL +  D  L  EA  LF  M+  +  + +  +Y +M+ IYG     + A  L +EM 
Sbjct: 188 NTLLRVYGDAELFGEAIHLFRLMQRKN-IEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 246

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
             G+  N +  + +I    K  ++D    +F      GV+ D  L   ++
Sbjct: 247 SRGIEPNSITYSTIISIWSKIGKLDRAAMLFQKLRSSGVEIDQVLYQTMI 296



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 79/345 (22%), Positives = 164/345 (47%), Gaps = 6/345 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K     P + + YN  +      + F+    L +EM +  +  + ++YS
Sbjct: 60  YSKAISIFSRLKRSGFSP-DLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTVSYS 118

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY + G  +E   L+      
Sbjct: 119 TLLTMYVENKKFLEALTVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 178

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   ++ N+V YN+++   GK  +   A
Sbjct: 179 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKA 238

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+ K      A  L++++R +   +D +LY T++  
Sbjct: 239 NNLIQEMQSRGIEPNSITYSTIISIWSKIGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVA 298

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K     +PDN      ++I    G ++ A  +F +  + G   
Sbjct: 299 YERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGSGRIEEATWVFRQAIDAGEVK 353

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
           ++     +I    K ++  ++V VF      G  PD  +   +L+
Sbjct: 354 DITVFERMIHLFSKYKKYSNVVEVFDKMRGLGYFPDSNVTALVLN 398



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 144/286 (50%), Gaps = 3/286 (1%)

Query: 198 RFGRQFQLIEQLA--NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMP 255
            FG++      LA   +M  + +  D + YS +I  +++   + +AI  F R+ ++G  P
Sbjct: 18  HFGKEGLFDAALAWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFSP 77

Query: 256 DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVL 315
           D V Y+A+++V+ K+    E  SL      +G  P+ +++S L  M+ E+  +     V 
Sbjct: 78  DLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTVSYSTLLTMYVENKKFLEALTVF 137

Query: 316 QEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA 375
            EM+ +    +L   N +++  G+ G    A  LF  M + G+ P+  +   L+++YG A
Sbjct: 138 AEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDA 197

Query: 376 RWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYS 435
               +A+ L+  M+      + + YN+++ +       E+A  L ++M+ S   +P++ +
Sbjct: 198 ELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ-SRGIEPNSIT 256

Query: 436 YTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
           Y+ +++I+   G +D A  LF+++   GV I+ +    +I    +A
Sbjct: 257 YSTIISIWSKIGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERA 302



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 124/263 (47%), Gaps = 1/263 (0%)

Query: 252 GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGI 311
            L PD  TYS ++  + K G  +  L+  ++        D + +S L ++  +  DY   
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALAWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 312 RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371
             +   +K  G  P+LV YN ++   GKA     ARSL  EM  +G+ P+  + + L+ +
Sbjct: 64  ISIFSRLKRSGFSPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTVSYSTLLTM 123

Query: 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
           Y + +   +AL ++  MRE K  +D    N ++++   +G+ +EA++LF  M+     +P
Sbjct: 124 YVENKKFLEALTVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG-IEP 182

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           +  SY  +L +YG       AI LF  M    +  NV+    ++   GK    +    + 
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 242

Query: 492 GVSIDRGVKPDDRLCGCLLSVVS 514
                RG++P+      ++S+ S
Sbjct: 243 QEMQSRGIEPNSITYSTIISIWS 265



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 49/238 (20%), Positives = 111/238 (46%), Gaps = 31/238 (13%)

Query: 218 IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL 277
           IE + ++Y+T++       LF EAI  F  M +  +  + VTY++++ +Y K+ + E+  
Sbjct: 180 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKAN 239

Query: 278 SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
           +L +   + G +P+ I +S +  ++ + G  D    + Q+++S GV+ + V+Y T++ A 
Sbjct: 240 NLIQEMQSRGIEPNSITYSTIISIWSKIGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAY 299

Query: 338 GKAGKPGLARSLFDEM-------------------------------VESGLTPDEKTLT 366
            +AG    A+ L  E+                               +++G   D     
Sbjct: 300 ERAGLVAHAKRLLHELKRPDNIPRDTAIHILAGSGRIEEATWVFRQAIDAGEVKDITVFE 359

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
            +I ++ K +   + +E++++MR   +  D  +   +LN    +   ++A  ++ +M+
Sbjct: 360 RMIHLFSKYKKYSNVVEVFDKMRGLGYFPDSNVTALVLNAYGKLHEFDKANNVYIEMQ 417



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/226 (22%), Positives = 95/226 (42%), Gaps = 5/226 (2%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           P+  +    L +    + + ++   F  ++ +N+     + YN  M       + +    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNI-EQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  EM S  IE ++ITYSTII+   +    D A   F+++  +G+  D+V Y  ++  Y 
Sbjct: 241 LIQEMQSRGIEPNSITYSTIISIWSKIGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYE 300

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           ++G V       +R +    +PD I       +   SG  +   +V ++    G   ++ 
Sbjct: 301 RAGLVAHA----KRLLHELKRPDNIPRDTAIHILAGSGRIEEATWVFRQAIDAGEVKDIT 356

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK 374
           V+  ++    K  K      +FD+M   G  PD      ++  YGK
Sbjct: 357 VFERMIHLFSKYKKYSNVVEVFDKMRGLGYFPDSNVTALVLNAYGK 402



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 88/191 (46%), Gaps = 3/191 (1%)

Query: 355 ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
           E  L+PD  T + LI  +GK      AL   ++M +++ P D +LY+ L+ +   +    
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALAWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
           +A  +F  +K S +  PD  +Y AM+N++G       A  L  EM   GV  N +  + L
Sbjct: 62  KAISIFSRLKRSGFS-PDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTVSYSTL 120

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN- 533
           +    + ++  + + VF    +     D   C  ++ V      +++  K+   +++   
Sbjct: 121 LTMYVENKKFLEALTVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180

Query: 534 -PKLVAFLNLI 543
            P +V++  L+
Sbjct: 181 EPNVVSYNTLL 191


>gi|357467093|ref|XP_003603831.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492879|gb|AES74082.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 530

 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 82/332 (24%), Positives = 161/332 (48%), Gaps = 5/332 (1%)

Query: 160 ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIE 219
           + + + F Q S  FFNW  +   FP     YN  +      R F L   L + M S  + 
Sbjct: 117 VRHGIPFLQ-SLAFFNWATTLEGFPSSPEPYNEMIDLAGKLRHFDLAWHLIDLMKSRGVR 175

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
           +   T+S ++    R  L  EA+  F RM   G  PD+V++S ++    K  +  E   L
Sbjct: 176 ITVSTFSVLVRRYVRAGLAAEAVHAFNRMEDYGCKPDKVSFSIVISSLCKKRRASEA-EL 234

Query: 280 YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
           +   +   ++PD I ++ L   +  +GD      V  +MK  GV+PN+  Y+ +++++ +
Sbjct: 235 FFDSLKHKFEPDVIVYTSLVHGWCRAGDIAKAEEVFSDMKEAGVKPNVYTYSIVIDSLCR 294

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
            G+   A  +F EM+++G  P+  T  +L++++ KA   +  L+++ +M+      D I 
Sbjct: 295 CGQITRAHDVFSEMIDAGCDPNAVTFNSLMRVHVKAGRTEKVLQVYNQMKRLGCAADTIS 354

Query: 400 YNTLL-NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458
           YN L+ + C D  L +EA ++ + M +     P+  ++ ++        +V+ A  ++ +
Sbjct: 355 YNFLIESHCKDENL-DEAVKVLDTM-VKKGVAPNASTFNSIFGCIAELHDVNGAHRMYAK 412

Query: 459 MSELGVAINVMGCTCLIQCLGKARRIDDLVRV 490
           M EL    N +    L++    ++ ID ++++
Sbjct: 413 MKELKCMPNTLTYNILMRMFADSKSIDMVLKL 444



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 71/316 (22%), Positives = 143/316 (45%), Gaps = 5/316 (1%)

Query: 151 QPTRENALLILNSL---KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIE 207
           +P + +  ++++SL   +   ++  FF+ +K +  F  + I Y   +            E
Sbjct: 210 KPDKVSFSIVISSLCKKRRASEAELFFDSLKHK--FEPDVIVYTSLVHGWCRAGDIAKAE 267

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           ++ ++M    ++ +  TYS +I    RC     A + F  M   G  P+ VT+++++ V+
Sbjct: 268 EVFSDMKEAGVKPNVYTYSIVIDSLCRCGQITRAHDVFSEMIDAGCDPNAVTFNSLMRVH 327

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            K+G+ E+VL +Y +    G   D I+++ L +   +  + D    VL  M   GV PN 
Sbjct: 328 VKAGRTEKVLQVYNQMKRLGCAADTISYNFLIESHCKDENLDEAVKVLDTMVKKGVAPNA 387

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
             +N++   + +      A  ++ +M E    P+  T   L++++  ++     L+L + 
Sbjct: 388 STFNSIFGCIAELHDVNGAHRMYAKMKELKCMPNTLTYNILMRMFADSKSIDMVLKLKKE 447

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           M E++   +   Y  L+ M  + G    A  L ++M      KP+   Y  +L +  + G
Sbjct: 448 MDESEVEPNVNTYRILILMFCEKGHWNNAYNLMKEMVEEKCLKPNLSIYETVLELLRNAG 507

Query: 448 NVDNAIELFEEMSELG 463
            +    EL E+M   G
Sbjct: 508 QLKKHEELVEKMVARG 523


>gi|326528911|dbj|BAJ97477.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 913

 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 91/359 (25%), Positives = 162/359 (45%), Gaps = 40/359 (11%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           ++ EM S+ I+ +N TYS +I+     + F  A   FE M K+GL PD   Y+ +++ + 
Sbjct: 474 ISKEMESSGIKHNNKTYSMLISGFIHLHDFTNAFRIFEEMLKSGLQPDRAIYNLLIEAFC 533

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           K G ++  + + E+      +P   AF  + + F  +GD      +L  M+  G  P ++
Sbjct: 534 KMGNMDRAIRILEKMQKERMQPSNRAFRPIIEGFAVAGDMKRALDILDLMRRSGCAPTVM 593

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            YN L+  + +  +   A S+ ++M  +G+TP+E T T +++ Y        A E + ++
Sbjct: 594 TYNALIHGLIRKNQVERAVSVLNKMSIAGITPNEHTYTIIMRGYAATGDIAKAFEYFTKI 653

Query: 389 RENKWPMDFILYNTLLNMCADIGLVE---------------------------------- 414
           +E    +D  +Y TLL  C   G ++                                  
Sbjct: 654 KEGGLKLDVYIYETLLRACCKSGRMQSALAVTREMSSQKIARNTFVYNILIDGWARRGDV 713

Query: 415 -EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTC 473
            EA  L + MK  D   P+ ++YT+ +N     G++  A  + +EMS++G+  N+   T 
Sbjct: 714 WEAADLMKQMK-EDGVPPNIHTYTSYINACCKAGDMQRAQTVIDEMSDVGLKPNLKTYTT 772

Query: 474 LIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGC----LLSVVSLCETSEDVGKVITC 528
           LI+   +A   D  ++ F      G+KPD+    C    LLS  ++ E S   G +  C
Sbjct: 773 LIKGWARASLPDRALKCFEEMKLAGLKPDEAAYHCLVTSLLSRATVMEGSTYTGILSVC 831



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 147/316 (46%), Gaps = 13/316 (4%)

Query: 181 NLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS------TIITCAKR 234
           NL  +  I Y+  + +          E+L +EM  + I+     Y       TII   K+
Sbjct: 376 NLGDLNGIIYSNIIHAHCQSGNMDRAEELVHEMEEDGIDAPIDAYHSMMHGYTIIQDEKK 435

Query: 235 CNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIA 294
           C +       FER+ +    P  ++Y  ++++Y K GKV + +++ +   +SG K +   
Sbjct: 436 CLIV------FERLKECCFTPSIISYGCLINLYVKIGKVAKAIAISKEMESSGIKHNNKT 489

Query: 295 FSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMV 354
           +S+L   F    D+     + +EM   G+QP+  +YN L+EA  K G    A  + ++M 
Sbjct: 490 YSMLISGFIHLHDFTNAFRIFEEMLKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQ 549

Query: 355 ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
           +  + P  +    +I+ +  A   K AL++ + MR +      + YN L++       VE
Sbjct: 550 KERMQPSNRAFRPIIEGFAVAGDMKRALDILDLMRRSGCAPTVMTYNALIHGLIRKNQVE 609

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
            A  +   M ++    P+ ++YT ++  Y + G++  A E F ++ E G+ ++V     L
Sbjct: 610 RAVSVLNKMSIAG-ITPNEHTYTIIMRGYAATGDIAKAFEYFTKIKEGGLKLDVYIYETL 668

Query: 475 IQCLGKARRIDDLVRV 490
           ++   K+ R+   + V
Sbjct: 669 LRACCKSGRMQSALAV 684



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 83/369 (22%), Positives = 159/369 (43%), Gaps = 6/369 (1%)

Query: 139 EAFLRAITEIPHQPTRENALLILNSLKFWQKSYF--FFNWIKSQNLFPMETIFYNVTMKS 196
           +A + A   IP    RE  L+I+   K   K +    F  ++++ + P   +F ++ + +
Sbjct: 263 QAVVSAFERIPKPSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSL-VHA 321

Query: 197 LRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMP- 255
               R  +       EM +  IEL  +TYS +I+   + N    A   F+   KT L   
Sbjct: 322 YAVARDMRGALSCTEEMKAEGIELTIVTYSILISGFGKINDTQSADNLFKEA-KTNLGDL 380

Query: 256 DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVL 315
           + + YS I+  + +SG ++    L       G      A+  +   +    D      V 
Sbjct: 381 NGIIYSNIIHAHCQSGNMDRAEELVHEMEEDGIDAPIDAYHSMMHGYTIIQDEKKCLIVF 440

Query: 316 QEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA 375
           + +K     P+++ Y  L+    K GK   A ++  EM  SG+  + KT + LI  +   
Sbjct: 441 ERLKECCFTPSIISYGCLINLYVKIGKVAKAIAISKEMESSGIKHNNKTYSMLISGFIHL 500

Query: 376 RWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYS 435
               +A  ++E M ++    D  +YN L+     +G ++ A R+ E M+  +  +P N +
Sbjct: 501 HDFTNAFRIFEEMLKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQ-KERMQPSNRA 559

Query: 436 YTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSI 495
           +  ++  +   G++  A+++ + M   G A  VM    LI  L +  +++  V V     
Sbjct: 560 FRPIIEGFAVAGDMKRALDILDLMRRSGCAPTVMTYNALIHGLIRKNQVERAVSVLNKMS 619

Query: 496 DRGVKPDDR 504
             G+ P++ 
Sbjct: 620 IAGITPNEH 628



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 68/320 (21%), Positives = 147/320 (45%), Gaps = 12/320 (3%)

Query: 164 LKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSL----RFGRQFQLIEQLANEMVSNEIE 219
           L  +  ++  F  +    L P   I YN+ +++        R  +++E++  E     ++
Sbjct: 500 LHDFTNAFRIFEEMLKSGLQPDRAI-YNLLIEAFCKMGNMDRAIRILEKMQKE----RMQ 554

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
             N  +  II           A++  + M ++G  P  +TY+A++    +  +VE  +S+
Sbjct: 555 PSNRAFRPIIEGFAVAGDMKRALDILDLMRRSGCAPTVMTYNALIHGLIRKNQVERAVSV 614

Query: 280 YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
             +   +G  P+   ++++ + +  +GD         ++K  G++ ++ +Y TLL A  K
Sbjct: 615 LNKMSIAGITPNEHTYTIIMRGYAATGDIAKAFEYFTKIKEGGLKLDVYIYETLLRACCK 674

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
           +G+   A ++  EM    +  +      LI  + +     +A +L ++M+E+  P +   
Sbjct: 675 SGRMQSALAVTREMSSQKIARNTFVYNILIDGWARRGDVWEAADLMKQMKEDGVPPNIHT 734

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDY-CKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458
           Y + +N C   G ++ A+ + ++M  SD   KP+  +YT ++  +      D A++ FEE
Sbjct: 735 YTSYINACCKAGDMQRAQTVIDEM--SDVGLKPNLKTYTTLIKGWARASLPDRALKCFEE 792

Query: 459 MSELGVAINVMGCTCLIQCL 478
           M   G+  +     CL+  L
Sbjct: 793 MKLAGLKPDEAAYHCLVTSL 812



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 86/379 (22%), Positives = 157/379 (41%), Gaps = 22/379 (5%)

Query: 242 IEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKM 301
           +  FER+ K    P    +  ++  YAK G      + +E   A G +P+   F+ L   
Sbjct: 266 VSAFERIPK----PSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHA 321

Query: 302 FGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD 361
           +  + D  G     +EMK+ G++  +V Y+ L+   GK      A +LF E   +    +
Sbjct: 322 YAVARDMRGALSCTEEMKAEGIELTIVTYSILISGFGKINDTQSADNLFKEAKTNLGDLN 381

Query: 362 EKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFE 421
               + +I  + ++     A EL   M E+        Y+++++    I   ++   +FE
Sbjct: 382 GIIYSNIIHAHCQSGNMDRAEELVHEMEEDGIDAPIDAYHSMMHGYTIIQDEKKCLIVFE 441

Query: 422 DMKLSDYC-KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK 480
             +L + C  P   SY  ++N+Y   G V  AI + +EM   G+  N    + LI     
Sbjct: 442 --RLKECCFTPSIISYGCLINLYVKIGKVAKAIAISKEMESSGIKHNNKTYSMLISGFIH 499

Query: 481 ARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ--ANPKLVA 538
                +  R+F   +  G++PD  +   L+         +   +++  +Q+    P   A
Sbjct: 500 LHDFTNAFRIFEEMLKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSNRA 559

Query: 539 FLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFC-------NCLIDICRNRNLNERAHE 591
           F  +IE    GF  +  + +  +   ++  RR  C       N LI     +N  ERA  
Sbjct: 560 FRPIIE----GFA-VAGDMKRALDILDL-MRRSGCAPTVMTYNALIHGLIRKNQVERAVS 613

Query: 592 LLYLGTLYGLYPGLHNKTL 610
           +L   ++ G+ P  H  T+
Sbjct: 614 VLNKMSIAGITPNEHTYTI 632



 Score = 52.4 bits (124), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 98/204 (48%), Gaps = 11/204 (5%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           K++ +F  IK   L  ++   Y   +++     + Q    +  EM S +I  +   Y+ +
Sbjct: 645 KAFEYFTKIKEGGL-KLDVYIYETLLRACCKSGRMQSALAVTREMSSQKIARNTFVYNIL 703

Query: 229 ITC-AKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           I   A+R +++ EA +  ++M + G+ P+  TY++ ++   K+G ++   ++ +     G
Sbjct: 704 IDGWARRGDVW-EAADLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAQTVIDEMSDVG 762

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA-------MGKA 340
            KP+   ++ L K +  +   D      +EMK  G++P+   Y+ L+ +       M  +
Sbjct: 763 LKPNLKTYTTLIKGWARASLPDRALKCFEEMKLAGLKPDEAAYHCLVTSLLSRATVMEGS 822

Query: 341 GKPGLARSLFDEMVESGLTPDEKT 364
              G+  S+  EM E+ LT D +T
Sbjct: 823 TYTGIL-SVCREMFENDLTVDMRT 845


>gi|242066030|ref|XP_002454304.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
 gi|241934135|gb|EES07280.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
          Length = 638

 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 100/363 (27%), Positives = 165/363 (45%), Gaps = 23/363 (6%)

Query: 130 KLNDCDNTEEAFLRAITEIPHQPTRENALLILNSLKFWQKS------YFFFNWIKSQNLF 183
           KL+D       F     E+ HQ  R +       ++   K+      Y FF  ++ +   
Sbjct: 277 KLDDVHGALSLF----EEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCR 332

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFD---- 239
           P +T+  N  +  L    +     +L  EM +       +TY+TII       LF+    
Sbjct: 333 P-DTVVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKA-----LFESKSR 386

Query: 240 --EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
             E   WFERM ++G+ P   TYS ++D + K+ ++E+ + L E     G+ P P A+  
Sbjct: 387 ASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCS 446

Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
           L    G++  YD    + QE+K      +  VY  +++ +GKAG+   A ++FDEM + G
Sbjct: 447 LIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLG 506

Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417
             PD     AL+    +     +AL    RM+E+    D   YN +LN  A  G    A 
Sbjct: 507 CAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAM 566

Query: 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
            +  +MK S   +PD  SY  +L      G  + A +L EEM+ LG   +++  + +++ 
Sbjct: 567 EMLSNMKQST-VRPDVVSYNTVLGALSHAGMFEEAAKLMEEMNTLGFEYDLITYSSILEA 625

Query: 478 LGK 480
           +GK
Sbjct: 626 IGK 628



 Score =  122 bits (307), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 92/359 (25%), Positives = 174/359 (48%), Gaps = 11/359 (3%)

Query: 151 QPTRE---NALLILNSLKFWQKSYFFFNWIKSQ-NLFPMETIFYNVTMKSL-RFGRQFQL 205
           QPT +   + +++L     + K +  +N + ++ + FP +T+ Y+  + +  + GR+   
Sbjct: 191 QPTAQAYNSMIIMLMHEGQYGKVHELYNEMSTEGHCFP-DTMTYSALISAFCKLGRR-DS 248

Query: 206 IEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
             QL NEM  N ++     Y+ +IT   + +    A+  FE M      PD  TY+ ++ 
Sbjct: 249 ATQLLNEMKENGMQPTTKIYTMLITLFFKLDDVHGALSLFEEMRHQYCRPDVFTYTELIR 308

Query: 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325
              K+G+++E    +      G +PD +  + +    G++G  D    + QEM +L   P
Sbjct: 309 GLGKAGRIDEAYHFFYEMQREGCRPDTVVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIP 368

Query: 326 NLVVYNTLLEAMGKA-GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384
           ++V YNT+++A+ ++  +     S F+ M ESG++P   T + LI  + K    + A+ L
Sbjct: 369 SVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMML 428

Query: 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYS-YTAMLNIY 443
            E M E  +P     Y +L++        + A  LF+++K  + C   +   Y  M+   
Sbjct: 429 LEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELK--ENCGSSSARVYAVMIKHL 486

Query: 444 GSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           G  G +D+AI +F+EM++LG A +V     L+  L +   +D+ +       + G  PD
Sbjct: 487 GKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPD 545



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 94/354 (26%), Positives = 159/354 (44%), Gaps = 4/354 (1%)

Query: 160 ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEM-VSNEI 218
           +L + K   K+   F  IK++   P     YN  +  L    Q+  + +L NEM      
Sbjct: 168 MLGNAKMVSKAIAIFYQIKTRKCQPTAQA-YNSMIIMLMHEGQYGKVHELYNEMSTEGHC 226

Query: 219 ELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS 278
             D +TYS +I+   +    D A +    M + G+ P    Y+ ++ ++ K   V   LS
Sbjct: 227 FPDTMTYSALISAFCKLGRRDSATQLLNEMKENGMQPTTKIYTMLITLFFKLDDVHGALS 286

Query: 279 LYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMG 338
           L+E       +PD   ++ L +  G++G  D   +   EM+  G +P+ VV N ++  +G
Sbjct: 287 LFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTVVMNNMINFLG 346

Query: 339 KAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW-ERMRENKWPMDF 397
           KAG+   A  LF EM      P   T   +IK   +++     +  W ERM+E+      
Sbjct: 347 KAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSS 406

Query: 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE 457
             Y+ L++       +E+A  L E+M    +  P   +Y ++++  G     D A ELF+
Sbjct: 407 FTYSILIDGFCKTNRMEKAMMLLEEMDEKGF-PPCPAAYCSLIDALGKAKRYDLACELFQ 465

Query: 458 EMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
           E+ E   + +      +I+ LGKA R+DD + +F      G  PD      L+S
Sbjct: 466 ELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMS 519



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/357 (23%), Positives = 147/357 (41%), Gaps = 39/357 (10%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEI------ELDNIT-- 224
           FF W   +  +  +T  Y   ++ L    Q+  + ++  EMV N I      EL  +   
Sbjct: 109 FFRWAAKRRNYEHDTSTYMALIRCLEVVEQYGEMWKMIQEMVRNPICVVTPTELSEVVRM 168

Query: 225 ----------------------------YSTIITCAKRCNLFDEAIEWFERMYKTG-LMP 255
                                       Y+++I        + +  E +  M   G   P
Sbjct: 169 LGNAKMVSKAIAIFYQIKTRKCQPTAQAYNSMIIMLMHEGQYGKVHELYNEMSTEGHCFP 228

Query: 256 DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVL 315
           D +TYSA++  + K G+ +    L      +G +P    +++L  +F +  D  G   + 
Sbjct: 229 DTMTYSALISAFCKLGRRDSATQLLNEMKENGMQPTTKIYTMLITLFFKLDDVHGALSLF 288

Query: 316 QEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA 375
           +EM+    +P++  Y  L+  +GKAG+   A   F EM   G  PD   +  +I   GKA
Sbjct: 289 EEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTVVMNNMINFLGKA 348

Query: 376 RWAKDALELWERMRENKWPMDFILYNTLLN-MCADIGLVEEAERLFEDMKLSDYCKPDNY 434
               DA++L++ M   +     + YNT++  +        E    FE MK S    P ++
Sbjct: 349 GRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESG-ISPSSF 407

Query: 435 SYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           +Y+ +++ +     ++ A+ L EEM E G          LI  LGKA+R D    +F
Sbjct: 408 TYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELF 464



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 126/272 (46%), Gaps = 2/272 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD-VYAKSGKVEEVLSL 279
           D +  + +I    +    D+A++ F+ M     +P  VTY+ I+  ++    +  EV S 
Sbjct: 334 DTVVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSW 393

Query: 280 YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
           +ER   SG  P    +S+L   F ++   +    +L+EM   G  P    Y +L++A+GK
Sbjct: 394 FERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGK 453

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
           A +  LA  LF E+ E+  +   +    +IK  GKA    DA+ +++ M +     D   
Sbjct: 454 AKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYA 513

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           YN L++  A  G+++EA      M+    C PD  SY  +LN     G    A+E+   M
Sbjct: 514 YNALMSGLARTGMLDEALSTMRRMQ-EHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNM 572

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
            +  V  +V+    ++  L  A   ++  ++ 
Sbjct: 573 KQSTVRPDVVSYNTVLGALSHAGMFEEAAKLM 604



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 84/212 (39%), Gaps = 37/212 (17%)

Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
           P   S + +M G +        +  ++K+   QP    YN+++  +   G+ G    L++
Sbjct: 159 PTELSEVVRMLGNAKMVSKAIAIFYQIKTRKCQPTAQAYNSMIIMLMHEGQYGKVHELYN 218

Query: 352 EM-VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
           EM  E    PD  T +ALI  + K                                   +
Sbjct: 219 EMSTEGHCFPDTMTYSALISAFCK-----------------------------------L 243

Query: 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG 470
           G  + A +L  +MK  +  +P    YT ++ ++    +V  A+ LFEEM       +V  
Sbjct: 244 GRRDSATQLLNEMK-ENGMQPTTKIYTMLITLFFKLDDVHGALSLFEEMRHQYCRPDVFT 302

Query: 471 CTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            T LI+ LGKA RID+    F      G +PD
Sbjct: 303 YTELIRGLGKAGRIDEAYHFFYEMQREGCRPD 334


>gi|83744086|gb|ABC42329.1| PPR protein [Oryza sativa Indica Group]
          Length = 761

 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 94/332 (28%), Positives = 155/332 (46%), Gaps = 41/332 (12%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
           +EM+   I  D +TYS+II    +    D+A+E    M K G+MP+  TY++I+  Y  S
Sbjct: 220 HEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTSMVKNGVMPNCRTYTSIMHGYCSS 279

Query: 271 GKVEEVLSLYER----GVA-SGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325
           G+ +E +   ++    GV   G +PD   +  L + +   G   G+  +L  M   G+ P
Sbjct: 280 GQPKEAIGFLKKVRSDGVEPDGLEPDIATYCTLLQGYATKGALVGMHALLDLMVRNGIHP 339

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
           +  VYN L+ A  K GK   A  +F +M + GL PD  T  A+I I  K+   +DA+  +
Sbjct: 340 DHYVYNILICAYAKQGKVDEAMLVFSKMRQQGLNPDAVTYGAVIGILCKSGRVEDAMLYF 399

Query: 386 ERMRE--------------------NKWP---------------MDFILYNTLLNMCADI 410
           E+M +                    NKW                ++ I +N++++     
Sbjct: 400 EQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKE 459

Query: 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG 470
           G V E+E+LF D+ +    KPD  +Y+ +++ Y   G +D A++L   M  +G+  N + 
Sbjct: 460 GRVIESEKLF-DLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVT 518

Query: 471 CTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
              LI    K  R+ D + +F      GV PD
Sbjct: 519 YRTLINGYCKISRMGDALVLFKEMESSGVSPD 550



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/286 (27%), Positives = 138/286 (48%), Gaps = 1/286 (0%)

Query: 206 IEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
           +  L + MV N I  D+  Y+ +I    +    DEA+  F +M + GL PD VTY A++ 
Sbjct: 325 MHALLDLMVRNGIHPDHYVYNILICAYAKQGKVDEAMLVFSKMRQQGLNPDAVTYGAVIG 384

Query: 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325
           +  KSG+VE+ +  +E+ +  G  P  I ++ L         ++    ++ EM   G+  
Sbjct: 385 ILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICL 444

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
           N + +N+++++  K G+   +  LFD MV  G+ PD  T + LI  Y  A    +A++L 
Sbjct: 445 NTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLL 504

Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445
             M       + + Y TL+N    I  + +A  LF++M+ S    PD  +Y  +L     
Sbjct: 505 SGMVSVGLKPNTVTYRTLINGYCKISRMGDALVLFKEME-SSGVSPDIITYNIILQGLFQ 563

Query: 446 GGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
                 A EL+  ++E G  I +     ++  L K +  DD +R+F
Sbjct: 564 TRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALRMF 609



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 147/303 (48%), Gaps = 10/303 (3%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTM----KSLRFGRQFQLIEQLANEMVSNEIELDNIT 224
           ++   F+ ++ Q L P + + Y   +    KS R        EQ+ +E +S      NI 
Sbjct: 359 EAMLVFSKMRQQGLNP-DAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSP----GNIV 413

Query: 225 YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
           Y+++I     CN ++ A E    M   G+  + + +++I+D + K G+V E   L++  V
Sbjct: 414 YNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMV 473

Query: 285 ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344
             G KPD I +S L   +  +G  D    +L  M S+G++PN V Y TL+    K  + G
Sbjct: 474 RIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYRTLINGYCKISRMG 533

Query: 345 LARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
            A  LF EM  SG++PD  T   +++   + R    A EL+ R+ E+   ++   YN +L
Sbjct: 534 DALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIIL 593

Query: 405 NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
           +      L ++A R+F+++ L D  K +  ++  M++     G    A +LF   S  G+
Sbjct: 594 HGLCKNKLTDDALRMFQNLCLMDL-KLEARTFNIMIDALLKVGRNGEAKDLFVAFSSNGL 652

Query: 465 AIN 467
             N
Sbjct: 653 VPN 655



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 133/287 (46%), Gaps = 6/287 (2%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D ++Y+T+I    +     +A   +  M    + PD VTYS+I+    K   +++ + + 
Sbjct: 195 DVVSYTTVINGFFKEGDSGKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVL 254

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGV-----QPNLVVYNTLLE 335
              V +G  P+   ++ +   +  SG        L++++S GV     +P++  Y TLL+
Sbjct: 255 TSMVKNGVMPNCRTYTSIMHGYCSSGQPKEAIGFLKKVRSDGVEPDGLEPDIATYCTLLQ 314

Query: 336 AMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPM 395
                G      +L D MV +G+ PD      LI  Y K     +A+ ++ +MR+     
Sbjct: 315 GYATKGALVGMHALLDLMVRNGIHPDHYVYNILICAYAKQGKVDEAMLVFSKMRQQGLNP 374

Query: 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIEL 455
           D + Y  ++ +    G VE+A   FE M + +   P N  Y ++++   +    + A EL
Sbjct: 375 DAVTYGAVIGILCKSGRVEDAMLYFEQM-IDEGLSPGNIVYNSLIHGLCTCNKWERAEEL 433

Query: 456 FEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
             EM + G+ +N +    +I    K  R+ +  ++F + +  GVKPD
Sbjct: 434 ILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPD 480



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/280 (23%), Positives = 127/280 (45%), Gaps = 9/280 (3%)

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL---YERGVASGWKPDPIAFSVLGKM 301
             RM +   MPD  + + +L       + +E L L      G   G  PD ++++ +   
Sbjct: 146 LRRMTELSCMPDVFSCTILLKGLCDENRSQEALELPHMMADGRGGGSAPDVVSYTTVING 205

Query: 302 FGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD 361
           F + GD         EM    + P++V Y++++ A+ K      A  +   MV++G+ P+
Sbjct: 206 FFKEGDSGKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTSMVKNGVMPN 265

Query: 362 EKTLTALIKIYGKARWAKDALELWERMRENK-----WPMDFILYNTLLNMCADIGLVEEA 416
            +T T+++  Y  +   K+A+   +++R +         D   Y TLL   A  G +   
Sbjct: 266 CRTYTSIMHGYCSSGQPKEAIGFLKKVRSDGVEPDGLEPDIATYCTLLQGYATKGALVGM 325

Query: 417 ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
             L  D+ + +   PD+Y Y  ++  Y   G VD A+ +F +M + G+  + +    +I 
Sbjct: 326 HALL-DLMVRNGIHPDHYVYNILICAYAKQGKVDEAMLVFSKMRQQGLNPDAVTYGAVIG 384

Query: 477 CLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLC 516
            L K+ R++D +  F   ID G+ P + +   L+  +  C
Sbjct: 385 ILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTC 424



 Score = 45.1 bits (105), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 76/185 (41%), Gaps = 3/185 (1%)

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382
           V P +  Y  L+    +A +  L  +    +V+ G   +  T T L+K     +   DA+
Sbjct: 83  VTPTVHTYAILIGCCCRADRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAM 142

Query: 383 EL-WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK--LSDYCKPDNYSYTAM 439
           ++   RM E     D      LL    D    +EA  L   M         PD  SYT +
Sbjct: 143 DIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELPHMMADGRGGGSAPDVVSYTTV 202

Query: 440 LNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGV 499
           +N +   G+   A   + EM +  ++ +V+  + +I  L K + +D  + V    +  GV
Sbjct: 203 INGFFKEGDSGKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTSMVKNGV 262

Query: 500 KPDDR 504
            P+ R
Sbjct: 263 MPNCR 267


>gi|225446845|ref|XP_002279656.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79490,
           mitochondrial-like [Vitis vinifera]
          Length = 844

 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 110/473 (23%), Positives = 204/473 (43%), Gaps = 19/473 (4%)

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
           LD  TY  +I    +    D A + F+ M +  L P  + +++++D   K+G+++  + +
Sbjct: 317 LDGSTYELMIPSLAKSGRLDAAFKLFQEMKEKNLRPSFLVFASLVDSMGKAGRLDTSMKV 376

Query: 280 YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
           Y      G +P    +  L + F ++G  +    +  EMK  G +PN  +Y  ++E+  K
Sbjct: 377 YMEMQGFGLRPSATMYVSLIESFVKAGKLETALRIWDEMKKAGFRPNYGLYTMVVESHAK 436

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
           +GK   A S+F +M ++G  P   T + L++++  +     A++L+  M           
Sbjct: 437 SGKLETAMSVFSDMEKAGFLPTPSTYSCLLEMHSASGQVDSAMKLYNSMTNAGLRPGLST 496

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           Y  LL + A+  LV+ A ++  +MK   +    + S + +L +Y   G+VD A+     M
Sbjct: 497 YTALLTLLANKKLVDVAAKVLLEMKAMGFSV--DVSASDVLMVYIKDGSVDLALRWLRFM 554

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETS 519
              G+  N      L +   K    +    +    ++   K D  L   +L+ +  C+  
Sbjct: 555 GSSGIRTNNFIIRQLFESCMKNGLYESAKPLLETYVNSAAKVDLILYTSILAHLVRCQEE 614

Query: 520 EDVGKVITCLQQANPKLVAFLNLI-----EDNSTGFENIKEEFRNVIKDTEVDARRPFCN 574
           ++   ++  L     K   F+  +     +        ++E F++V  + E  A R F N
Sbjct: 615 QNERHLMLILSATKHKAHTFMCGLFTGPEQRKQPVLSFVREFFQSVDYELEEGAARYFVN 674

Query: 575 CLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDE---WSLDVRSLSVGAAQTALEE 631
            L++         RA  +  +     L+P       D+   WSLDVR+LSVGAA  A+  
Sbjct: 675 VLLNYLVLMGQINRARCVWKVAYENKLFP--KAIVFDQHIAWSLDVRNLSVGAALVAVVH 732

Query: 632 WMWTLAKIVLREEVLPQLFLAETGTGTHKFSQGLATAFASHVNKLAAPFRQSE 684
            +    K +L   V+P+     TG         L    A  +N + +PF  S+
Sbjct: 733 TLHRFRKRMLYYGVVPRRIKLVTGP-------TLKIVVAQMLNSVESPFEVSK 778



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 163/337 (48%), Gaps = 16/337 (4%)

Query: 173 FFNWIKSQNLFPM-ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITC 231
            F W K Q  + M     Y +    L   R F  I+ L +EM+ +    DN   S++I C
Sbjct: 195 LFRWAKRQPWYSMLNDECYALLFDRLNQSRDFDAIQSLFDEMIRDSG--DNNGVSSVIAC 252

Query: 232 AK------RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVA 285
            +      +    + A   F+++  +G   D  TY++++ ++   G   +   +YE   A
Sbjct: 253 NQVVRDLAKAEKLEVAFCCFKKVQDSGCKIDTATYNSLITLFLNKGLPYKAFEVYESMEA 312

Query: 286 SGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGL 345
           +G   D   + ++     +SG  D    + QEMK   ++P+ +V+ +L+++MGKAG+   
Sbjct: 313 AGCLLDGSTYELMIPSLAKSGRLDAAFKLFQEMKEKNLRPSFLVFASLVDSMGKAGRLDT 372

Query: 346 ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405
           +  ++ EM   GL P      +LI+ + KA   + AL +W+ M++  +  ++ LY  ++ 
Sbjct: 373 SMKVYMEMQGFGLRPSATMYVSLIESFVKAGKLETALRIWDEMKKAGFRPNYGLYTMVVE 432

Query: 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
             A  G +E A  +F DM+ + +  P   +Y+ +L ++ + G VD+A++L+  M+  G+ 
Sbjct: 433 SHAKSGKLETAMSVFSDMEKAGFL-PTPSTYSCLLEMHSASGQVDSAMKLYNSMTNAGLR 491

Query: 466 INVMGCTCLIQCLGKARRIDDLVRVF------GVSID 496
             +   T L+  L   + +D   +V       G S+D
Sbjct: 492 PGLSTYTALLTLLANKKLVDVAAKVLLEMKAMGFSVD 528



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 141/316 (44%), Gaps = 24/316 (7%)

Query: 330 YNTLLEAMGKAGKPGLARSLFDEMV-ESGLTPDEKTLTA---LIKIYGKARWAKDALELW 385
           Y  L + + ++      +SLFDEM+ +SG      ++ A   +++   KA   + A   +
Sbjct: 213 YALLFDRLNQSRDFDAIQSLFDEMIRDSGDNNGVSSVIACNQVVRDLAKAEKLEVAFCCF 272

Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445
           ++++++   +D   YN+L+ +  + GL  +A  ++E M+ +  C  D  +Y  M+     
Sbjct: 273 KKVQDSGCKIDTATYNSLITLFLNKGLPYKAFEVYESMEAAG-CLLDGSTYELMIPSLAK 331

Query: 446 GGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRL 505
            G +D A +LF+EM E  +  + +    L+  +GKA R+D  ++V+      G++P   +
Sbjct: 332 SGRLDAAFKLFQEMKEKNLRPSFLVFASLVDSMGKAGRLDTSMKVYMEMQGFGLRPSATM 391

Query: 506 CGCLLSVVSLCETSEDVGKVITCLQ--------QANPKLVAFLNLIEDNSTGFENIKEEF 557
                  VSL E+    GK+ T L+           P    +  ++E ++   +   E  
Sbjct: 392 ------YVSLIESFVKAGKLETALRIWDEMKKAGFRPNYGLYTMVVESHAKSGK--LETA 443

Query: 558 RNVIKDTEVDARRP---FCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWS 614
            +V  D E     P     +CL+++       + A +L    T  GL PGL   T     
Sbjct: 444 MSVFSDMEKAGFLPTPSTYSCLLEMHSASGQVDSAMKLYNSMTNAGLRPGLSTYTALLTL 503

Query: 615 LDVRSLSVGAAQTALE 630
           L  + L   AA+  LE
Sbjct: 504 LANKKLVDVAAKVLLE 519


>gi|238908350|emb|CAZ40335.1| non restoring pentatricopeptide repeat [Raphanus sativus]
          Length = 683

 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 97/377 (25%), Positives = 171/377 (45%), Gaps = 17/377 (4%)

Query: 141 FLRAITEIPH-QPTRENALLILNSL---KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKS 196
            LR + EI H +P       I++ L        S+  F  ++ + +FP   + YN  +  
Sbjct: 239 LLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFP-NIVTYNCMIGG 297

Query: 197 LRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPD 256
                ++   ++L  EM+  +I  + +TY+ +I    +   F EA E ++ M   G++P+
Sbjct: 298 FCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPN 357

Query: 257 EVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQ 316
            +TY++++D + K  +++    ++      G  PD   F+ L   +  +   D    +L 
Sbjct: 358 TITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLH 417

Query: 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
           EM   G+  N V YNTL+      G    A  L  +M+ SG+ PD  T   L+       
Sbjct: 418 EMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNG 477

Query: 377 WAKDALELWERMRENKWPM-----------DFILYNTLLNMCADIGLVEEAERLFEDMKL 425
             KDALE+++ M+++K  +           D + YN L+    + G   EAE L+E+M  
Sbjct: 478 KLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPH 537

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
                PD  +Y++M++       +D A ++F  M     + NV+    LI    KA R+D
Sbjct: 538 RGIV-PDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVD 596

Query: 486 DLVRVFGVSIDRGVKPD 502
           D + +F     RG+  D
Sbjct: 597 DGLELFCEMGRRGIVAD 613



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 91/365 (24%), Positives = 168/365 (46%), Gaps = 43/365 (11%)

Query: 163 SLKFWQKSYFFFNWIKSQNLF-------PMETIF-YNVTMKSLRFGRQFQLIEQLANEMV 214
           SLK    SY       + +LF       P+ ++  +N  M ++    +  L+  L  +M 
Sbjct: 49  SLKLRSGSYEIKGLEDAIDLFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQKME 108

Query: 215 SNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAI----------- 263
             +I  D  +++ +I C   C+    A+  F ++ K GL PD VT++ +           
Sbjct: 109 RKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVS 168

Query: 264 --LDVY------------------AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
             LD++                   + G+V E ++L +R V +G +PD I +        
Sbjct: 169 EALDLFHQICRPDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMC 228

Query: 304 ESGDYDGIRYVLQEMKSLG-VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
           + GD      +L++M+ +  ++PN+V+Y+ +++ + K G+   + +LF EM + G+ P+ 
Sbjct: 229 KMGDTVSALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNI 288

Query: 363 KTLTALIKIYG-KARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFE 421
            T   +I  +    RW+  A  L + M E K   + + YN L+N     G   EA  L++
Sbjct: 289 VTYNCMIGGFCISGRWSA-AQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYD 347

Query: 422 DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
           +M L     P+  +Y +M++ +     +D A ++F  M+  G + +V   T LI     A
Sbjct: 348 EM-LPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGA 406

Query: 482 RRIDD 486
           +RIDD
Sbjct: 407 KRIDD 411



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 89/176 (50%), Gaps = 4/176 (2%)

Query: 216 NEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEE 275
           N +E D +TY+ +I        F EA E +E M   G++PD +TYS+++D   K  +++E
Sbjct: 503 NGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDE 562

Query: 276 VLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLE 335
              ++    +  + P+ + F+ L   + ++G  D    +  EM   G+  + ++Y TL+ 
Sbjct: 563 ATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIY 622

Query: 336 AMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN 391
              K G    A  +F EM+ SG+ PD  T+  ++  +    W+K+ LE    M E+
Sbjct: 623 GFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGF----WSKEELERAVAMLED 674



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/265 (22%), Positives = 119/265 (44%), Gaps = 4/265 (1%)

Query: 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
            ++AI+ F  M ++  +P  + ++ ++    +  + + V+SLY++      + D  +F++
Sbjct: 62  LEDAIDLFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTI 121

Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
           L K F              ++  LG+ P++V + TLL  +    +   A  LF ++    
Sbjct: 122 LIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQICR-- 179

Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417
             PD  T T L+    +     +A+ L +RM EN    D I Y T ++    +G    A 
Sbjct: 180 --PDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSAL 237

Query: 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
            L   M+   + KP+   Y+A+++     G   ++  LF EM + G+  N++   C+I  
Sbjct: 238 NLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGG 297

Query: 478 LGKARRIDDLVRVFGVSIDRGVKPD 502
              + R     R+    ++R + P+
Sbjct: 298 FCISGRWSAAQRLLQEMLERKISPN 322



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 81/174 (46%)

Query: 161 LNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIEL 220
           L   K  QKS    +     N    + + YN+ +  L    +F   E+L  EM    I  
Sbjct: 483 LEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVP 542

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D ITYS++I    + +  DEA + F  M      P+ VT++ +++ Y K+G+V++ L L+
Sbjct: 543 DTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELF 602

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLL 334
                 G   D I +  L   F + G+ +G   + QEM S GV P+ +    +L
Sbjct: 603 CEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNML 656


>gi|156083863|ref|XP_001609415.1| pentatricopeptide repeat domain containing protein [Babesia bovis
           T2Bo]
 gi|154796666|gb|EDO05847.1| pentatricopeptide repeat domain containing protein [Babesia bovis]
          Length = 1067

 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 86/284 (30%), Positives = 134/284 (47%), Gaps = 4/284 (1%)

Query: 224 TYSTIITCAKRCNLFDEAIE-WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           T   II     C    E  E W E     G  P+EVTY  +LD Y  + ++EE + L + 
Sbjct: 698 TCGVIIKSLGCCGRIAECKEIWKEMANSQGNEPNEVTYGIMLDAYVNNNRMEEAMDLLQE 757

Query: 283 GVASG-WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG 341
               G  KP+ I ++ L K FG++        +   M S GV  N V YN++++A  + G
Sbjct: 758 MKQKGNVKPNTIMYTTLIKGFGQNRQLQRAMSIYDMMVSEGVMRNTVTYNSIIDACARVG 817

Query: 342 KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYN 401
               A +L +EM+ + + PD  T + +IK Y        + +L   M E     D ILYN
Sbjct: 818 DMKAAAALLEEMMMNQVEPDLITFSTIIKGYCVQCNMDQSFQLLSIMYERGIKPDGILYN 877

Query: 402 TLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM-S 460
           +LL  C   G +   E+L+E M++     P N++ T ++ +YG  G +D   +L E + +
Sbjct: 878 SLLEGCVKSGRLWLCEKLWEQMRIHGI-APSNFTLTILIKMYGRSGQLDKVFDLVERLPA 936

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR 504
           E G  IN    TCL+       R +  + ++    D  VKPD +
Sbjct: 937 EYGFTINAHVYTCLMSACITNGRYNTALDIYRCVKDGSVKPDAK 980



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 154/331 (46%), Gaps = 11/331 (3%)

Query: 141  FLRAITEIPH---QPTRENALLILNSL----KFWQKSYFFFNWIKSQNLFPMETIFYNVT 193
             LR IT+      QP  +   +I+ SL    +  +    +     SQ   P E + Y + 
Sbjct: 680  LLRLITKFRQMGLQPQLQTCGVIIKSLGCCGRIAECKEIWKEMANSQGNEPNE-VTYGIM 738

Query: 194  MKSLRFGRQFQLIEQLANEMVS-NEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTG 252
            + +     + +    L  EM     ++ + I Y+T+I    +      A+  ++ M   G
Sbjct: 739  LDAYVNNNRMEEAMDLLQEMKQKGNVKPNTIMYTTLIKGFGQNRQLQRAMSIYDMMVSEG 798

Query: 253  LMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIR 312
            +M + VTY++I+D  A+ G ++   +L E  + +  +PD I FS + K +    + D   
Sbjct: 799  VMRNTVTYNSIIDACARVGDMKAAAALLEEMMMNQVEPDLITFSTIIKGYCVQCNMDQSF 858

Query: 313  YVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIY 372
             +L  M   G++P+ ++YN+LLE   K+G+  L   L+++M   G+ P   TLT LIK+Y
Sbjct: 859  QLLSIMYERGIKPDGILYNSLLEGCVKSGRLWLCEKLWEQMRIHGIAPSNFTLTILIKMY 918

Query: 373  GKARWAKDALELWERM-RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
            G++       +L ER+  E  + ++  +Y  L++ C   G    A  ++  +K     KP
Sbjct: 919  GRSGQLDKVFDLVERLPAEYGFTINAHVYTCLMSACITNGRYNTALDIYRCVK-DGSVKP 977

Query: 432  DNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
            D  +Y  +L     G     A++L  +M  L
Sbjct: 978  DAKTYETLLQGVTRGNLFAEAVDLLRDMYNL 1008



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 116/274 (42%), Gaps = 43/274 (15%)

Query: 239 DEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
           DE + + ER+       D+ ++S  LD   +    + +L L  +    G +P      V+
Sbjct: 648 DEFVTFCERINL-----DDASFSVALDCCLRLKNPKRLLRLITKFRQMGLQPQLQTCGVI 702

Query: 299 GKMFGESGDYDGIRYVLQEM-KSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
            K  G  G     + + +EM  S G +PN V Y  +L+A     +   A  L  EM + G
Sbjct: 703 IKSLGCCGRIAECKEIWKEMANSQGNEPNEVTYGIMLDAYVNNNRMEEAMDLLQEMKQKG 762

Query: 358 -LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEA 416
            + P+    T LIK +G+ R  + A+ +++ M       + + YN++++ CA +G ++ A
Sbjct: 763 NVKPNTIMYTTLIKGFGQNRQLQRAMSIYDMMVSEGVMRNTVTYNSIIDACARVGDMKAA 822

Query: 417 ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
             L E+M ++   +PD  +++ ++  Y    N+D + +L   M E               
Sbjct: 823 AALLEEMMMNQV-EPDLITFSTIIKGYCVQCNMDQSFQLLSIMYE--------------- 866

Query: 477 CLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
                               RG+KPD  L   LL
Sbjct: 867 --------------------RGIKPDGILYNSLL 880


>gi|326499175|dbj|BAK06078.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 566

 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 79/325 (24%), Positives = 161/325 (49%), Gaps = 9/325 (2%)

Query: 172 FFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITC 231
            F  WI+   ++  +   +NV +K +      Q   +L   M       D +T++ ++  
Sbjct: 220 LFEGWIQG-GVYSPDVWSFNVVIKGVCKVGDVQKALELVERMDEFGCSPDTVTHNILVNG 278

Query: 232 AKRCNLFDEAIEWFERMYKTGL-MPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
             R     +  E   R+ + G+ MP+ VTY++++  Y K+G++E+ +++Y   VA G  P
Sbjct: 279 LCRAKEVSKGREVLRRLQRDGVCMPNVVTYTSVISGYCKAGRMEDAMAVYNDMVAVGTSP 338

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
           + + ++VL   +G++G+      V Q+M      P++V +++L++   + G+   A  ++
Sbjct: 339 NVVTYNVLINGYGKAGNMGSAVAVYQQMILRRCLPDVVTFSSLIDGYCRCGQLDDAMKIW 398

Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER--MRENKWPMDFILYNTLLNMCA 408
            EM +  + P+  T   +I  + K   + +AL   ++  MR +  P  FI YN ++++  
Sbjct: 399 TEMAQYHIQPNAHTFCIIIHTFCKQNRSGEALHFLKKMNMRTDIAPQAFI-YNPVIDVLC 457

Query: 409 DIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINV 468
             G V+EA  +  +M+    C+PD Y+YT ++  +   G +  A+  F +M E G + + 
Sbjct: 458 KGGKVDEANMILIEME-EKGCRPDKYTYTILIIGHCMKGRIAEAVTFFHKMVETGCSPDS 516

Query: 469 MGCTCLIQCL---GKARRIDDLVRV 490
           +     I CL   G    +D ++R+
Sbjct: 517 IVVNSFISCLLKSGMPGEVDHIMRI 541



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 153/345 (44%), Gaps = 7/345 (2%)

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV-ASGWKPDPIAFSVLGKMFGESGDY 308
           +  + P   +Y  ++ +  +SG+  + L L+++    SG+ P+    S L      +G  
Sbjct: 120 QLAMPPSAHSYRYVISLMCQSGRHTDALQLFDQMTDQSGYFPNARFLSFLSGSCAAAGLL 179

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL-TPDEKTLTA 367
           D    +L +    G       YN L++     G+   A +LF+  ++ G+ +PD  +   
Sbjct: 180 DAAAALLSKASQFGCSIEAYAYNKLMDLFIGHGRVQDAVALFEGWIQGGVYSPDVWSFNV 239

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           +IK   K    + ALEL ERM E     D + +N L+N       V +   +   ++   
Sbjct: 240 VIKGVCKVGDVQKALELVERMDEFGCSPDTVTHNILVNGLCRAKEVSKGREVLRRLQRDG 299

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
            C P+  +YT++++ Y   G +++A+ ++ +M  +G + NV+    LI   GKA  +   
Sbjct: 300 VCMPNVVTYTSVISGYCKAGRMEDAMAVYNDMVAVGTSPNVVTYNVLINGYGKAGNMGSA 359

Query: 488 VRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNS 547
           V V+   I R   PD      L+     C   +D  K+ T + Q + +  A    I  ++
Sbjct: 360 VAVYQQMILRRCLPDVVTFSSLIDGYCRCGQLDDAMKIWTEMAQYHIQPNAHTFCIIIHT 419

Query: 548 TGFENIKEEFRNVIKD----TEVDARRPFCNCLIDI-CRNRNLNE 587
              +N   E  + +K     T++  +    N +ID+ C+   ++E
Sbjct: 420 FCKQNRSGEALHFLKKMNMRTDIAPQAFIYNPVIDVLCKGGKVDE 464



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 66/154 (42%), Gaps = 7/154 (4%)

Query: 151 QPTRENALLILNSLKFWQKSYFFFNWIKSQNL---FPMETIFYNVTMKSLRFGRQFQLIE 207
           QP      +I+++     +S    +++K  N+      +   YN  +  L  G +     
Sbjct: 407 QPNAHTFCIIIHTFCKQNRSGEALHFLKKMNMRTDIAPQAFIYNPVIDVLCKGGKVDEAN 466

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
            +  EM       D  TY+ +I          EA+ +F +M +TG  PD +  ++ +   
Sbjct: 467 MILIEMEEKGCRPDKYTYTILIIGHCMKGRIAEAVTFFHKMVETGCSPDSIVVNSFISCL 526

Query: 268 AKSG---KVEEVLSLYERGVASGWK-PDPIAFSV 297
            KSG   +V+ ++ +   G +S WK P P+  S+
Sbjct: 527 LKSGMPGEVDHIMRIAAGGASSSWKDPSPVTQSI 560


>gi|242061252|ref|XP_002451915.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
 gi|241931746|gb|EES04891.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
          Length = 571

 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 92/358 (25%), Positives = 174/358 (48%), Gaps = 9/358 (2%)

Query: 151 QPTRE---NALLILNSLKFWQKSYFFFNWIKSQ-NLFPMETIFYNVTMKSL-RFGRQFQL 205
           QPT +   + +++L     ++K +  +N + ++ + FP +T+ Y+  + +  + GR+   
Sbjct: 191 QPTAQAYNSMIIMLMHEGQYEKVHELYNEMSTEGHCFP-DTMTYSALISAFCKLGRRDSA 249

Query: 206 IEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
           I QL NEM  N ++     Y+ ++    + N    A+  FE M      PD  TY+ ++ 
Sbjct: 250 I-QLLNEMKDNGMQPTTKIYTMLVALFFKLNDVHGALSLFEEMRHQYCRPDVFTYTELIR 308

Query: 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325
              K+G+++E    +      G +PD I  + +    G++G  D    + QEM +L   P
Sbjct: 309 GLGKAGRIDEAYHFFYEMQREGCRPDTIVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIP 368

Query: 326 NLVVYNTLLEAMGKA-GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384
           ++V YNT+++A+ ++  +     S F+ M ESG++P   T + LI  + K    + A+ L
Sbjct: 369 SVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMML 428

Query: 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYG 444
            E M E  +P     Y +L++        + A  LF+++K  +     +  Y  M+   G
Sbjct: 429 LEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELK-ENCGSSSSRVYAVMIKHLG 487

Query: 445 SGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
             G +D+AI +F+EM++LG A +V     L+  L +   +D+ +       + G  PD
Sbjct: 488 KAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPD 545



 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/354 (26%), Positives = 160/354 (45%), Gaps = 4/354 (1%)

Query: 160 ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEM-VSNEI 218
           +L + K   K+   F  IK++   P     YN  +  L    Q++ + +L NEM      
Sbjct: 168 MLGNAKMVSKAIAIFYQIKTRKCQPTAQA-YNSMIIMLMHEGQYEKVHELYNEMSTEGHC 226

Query: 219 ELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS 278
             D +TYS +I+   +    D AI+    M   G+ P    Y+ ++ ++ K   V   LS
Sbjct: 227 FPDTMTYSALISAFCKLGRRDSAIQLLNEMKDNGMQPTTKIYTMLVALFFKLNDVHGALS 286

Query: 279 LYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMG 338
           L+E       +PD   ++ L +  G++G  D   +   EM+  G +P+ +V N ++  +G
Sbjct: 287 LFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTIVMNNMINFLG 346

Query: 339 KAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW-ERMRENKWPMDF 397
           KAG+   A  LF EM      P   T   +IK   +++     +  W ERM+E+      
Sbjct: 347 KAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSS 406

Query: 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE 457
             Y+ L++       +E+A  L E+M    +  P   +Y ++++  G     D A ELF+
Sbjct: 407 FTYSILIDGFCKTNRMEKAMMLLEEMDEKGF-PPCPAAYCSLIDALGKAKRYDLACELFQ 465

Query: 458 EMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
           E+ E   + +      +I+ LGKA R+DD + +F      G  PD      L+S
Sbjct: 466 ELKENCGSSSSRVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMS 519



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/357 (23%), Positives = 148/357 (41%), Gaps = 39/357 (10%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEI------ELDNIT-- 224
           FF W   +  +  +T  Y   +  L    Q+  + ++  EMV N I      EL  +   
Sbjct: 109 FFRWAAKRRNYEHDTSTYMALIHCLEVVEQYGEMWKMIQEMVRNPICVVTPTELSEVVRM 168

Query: 225 ----------------------------YSTIITCAKRCNLFDEAIEWFERMYKTG-LMP 255
                                       Y+++I        +++  E +  M   G   P
Sbjct: 169 LGNAKMVSKAIAIFYQIKTRKCQPTAQAYNSMIIMLMHEGQYEKVHELYNEMSTEGHCFP 228

Query: 256 DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVL 315
           D +TYSA++  + K G+ +  + L      +G +P    +++L  +F +  D  G   + 
Sbjct: 229 DTMTYSALISAFCKLGRRDSAIQLLNEMKDNGMQPTTKIYTMLVALFFKLNDVHGALSLF 288

Query: 316 QEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA 375
           +EM+    +P++  Y  L+  +GKAG+   A   F EM   G  PD   +  +I   GKA
Sbjct: 289 EEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTIVMNNMINFLGKA 348

Query: 376 RWAKDALELWERMRENKWPMDFILYNTLLN-MCADIGLVEEAERLFEDMKLSDYCKPDNY 434
               DA++L++ M   +     + YNT++  +        E    FE MK S    P ++
Sbjct: 349 GRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESG-ISPSSF 407

Query: 435 SYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           +Y+ +++ +     ++ A+ L EEM E G          LI  LGKA+R D    +F
Sbjct: 408 TYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELF 464



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 129/288 (44%), Gaps = 22/288 (7%)

Query: 130 KLNDCDNTEEAFLRAITEIPHQPTRENALLILNSLKFWQKS------YFFFNWIKSQNLF 183
           KLND       F     E+ HQ  R +       ++   K+      Y FF  ++ +   
Sbjct: 277 KLNDVHGALSLF----EEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCR 332

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFD---- 239
           P +TI  N  +  L    +     +L  EM +       +TY+TII       LF+    
Sbjct: 333 P-DTIVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKA-----LFESKSR 386

Query: 240 --EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
             E   WFERM ++G+ P   TYS ++D + K+ ++E+ + L E     G+ P P A+  
Sbjct: 387 ASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCS 446

Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
           L    G++  YD    + QE+K      +  VY  +++ +GKAG+   A ++FDEM + G
Sbjct: 447 LIDALGKAKRYDLACELFQELKENCGSSSSRVYAVMIKHLGKAGRLDDAINMFDEMNKLG 506

Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405
             PD     AL+    +     +AL    RM+E+    D   YN +LN
Sbjct: 507 CAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILN 554



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 107/222 (48%), Gaps = 2/222 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD-VYAKSGKVEEVLSL 279
           D I  + +I    +    D+A++ F+ M     +P  VTY+ I+  ++    +  EV S 
Sbjct: 334 DTIVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSW 393

Query: 280 YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
           +ER   SG  P    +S+L   F ++   +    +L+EM   G  P    Y +L++A+GK
Sbjct: 394 FERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGK 453

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
           A +  LA  LF E+ E+  +   +    +IK  GKA    DA+ +++ M +     D   
Sbjct: 454 AKRYDLACELFQELKENCGSSSSRVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYA 513

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
           YN L++  A  G+++EA      M+    C PD  SY  +LN
Sbjct: 514 YNALMSGLARTGMLDEALSTMRRMQ-EHGCIPDINSYNIILN 554



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 90/211 (42%), Gaps = 40/211 (18%)

Query: 330 YNTLLEAMGKAGKPGLARSLFDEMVESGL---TPDEKTLTALIKIYGKARWAKDALELWE 386
           Y  L+  +    + G    +  EMV + +   TP E  L+ ++++ G A+    A+ ++ 
Sbjct: 126 YMALIHCLEVVEQYGEMWKMIQEMVRNPICVVTPTE--LSEVVRMLGNAKMVSKAIAIFY 183

Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
           +++  K       YN+++ M    G  E+   L+ +M    +C PD  +Y+A+++ +   
Sbjct: 184 QIKTRKCQPTAQAYNSMIIMLMHEGQYEKVHELYNEMSTEGHCFPDTMTYSALISAFCKL 243

Query: 447 GNVDNAIELFEEMSELG-----------VAI------------------------NVMGC 471
           G  D+AI+L  EM + G           VA+                        +V   
Sbjct: 244 GRRDSAIQLLNEMKDNGMQPTTKIYTMLVALFFKLNDVHGALSLFEEMRHQYCRPDVFTY 303

Query: 472 TCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           T LI+ LGKA RID+    F      G +PD
Sbjct: 304 TELIRGLGKAGRIDEAYHFFYEMQREGCRPD 334



 Score = 44.3 bits (103), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 23/116 (19%), Positives = 53/116 (45%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
            Y ++I    +   +D A E F+ + +         Y+ ++    K+G++++ +++++  
Sbjct: 443 AYCSLIDALGKAKRYDLACELFQELKENCGSSSSRVYAVMIKHLGKAGRLDDAINMFDEM 502

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
              G  PD  A++ L      +G  D     ++ M+  G  P++  YN +L  + K
Sbjct: 503 NKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLQK 558


>gi|255574497|ref|XP_002528160.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532417|gb|EEF34211.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 569

 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 147/327 (44%), Gaps = 42/327 (12%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           +L NEM S + + +  TY+ ++    R  L ++A E FE++ + G  PD   Y+A+++ Y
Sbjct: 274 KLFNEMRSQKCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGHEPDVYAYNALMEAY 333

Query: 268 AKSG---KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQ 324
           +++G      E+ SL +     G +PD  +++++   +G  G ++  + V +EMK LG+ 
Sbjct: 334 SRAGFPYGAAEIFSLMQH---MGCEPDRASYNIMVDAYGRGGLHEDAQAVFEEMKRLGIT 390

Query: 325 PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384
           P +  +  LL A  KAG       + +E+ ESGL PD   L +++ +YG+        E+
Sbjct: 391 PTMKSHMLLLSAYSKAGDVAKCEDIVNELHESGLEPDTFVLNSMLNLYGRLGQFGKMEEV 450

Query: 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYG 444
              M    +  D   YN L+N+    G  E+ E LF+ +   +  KPD  ++T+ L  Y 
Sbjct: 451 LTAMESGPYATDISTYNILINIYGRAGFFEKMEGLFQSLAAKN-LKPDVVTWTSRLGAYS 509

Query: 445 SGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR 504
                   +E+FEEM                                   ID G  PD R
Sbjct: 510 RKKLYTKCLEIFEEM-----------------------------------IDAGCHPDGR 534

Query: 505 LCGCLLSVVSLCETSEDVGKVITCLQQ 531
               LLS  S  +  E V  VI  + +
Sbjct: 535 TAKVLLSSCSSEDQIEQVTTVIRTMHK 561



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 87/383 (22%), Positives = 161/383 (42%), Gaps = 38/383 (9%)

Query: 156 NALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQ--FQLIEQLANEM 213
           N ++ L   K W        WI  ++ F  + + +N+ + +  +GR+  +++ E    E+
Sbjct: 117 NVVVQLRLNKKWDLILLICQWILYRSSFQSDVMIFNLVIDA--YGRKSLYKMAETTYFEL 174

Query: 214 VSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKV 273
           +         TY+ ++       L ++A   F  M K GL P  + Y+A +D   K+G  
Sbjct: 175 IEARCIPTEDTYALLLKAYCTSGLLEKAEAIFAEMRKYGLPPSAIVYNAYIDGLMKAGNP 234

Query: 274 EEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTL 333
           +  + +++R      +P    +++L  + G++        +  EM+S   +PN+  Y  L
Sbjct: 235 QRAVEIFQRMKRDCCQPSTETYTLLINLHGKASQSYMALKLFNEMRSQKCKPNICTYTAL 294

Query: 334 LEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKW 393
           + A  + G    A  +F+++ E G  PD     AL++ Y +A +   A E++  M+    
Sbjct: 295 VNAFAREGLCEKAEEIFEQLQEDGHEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGC 354

Query: 394 PMDFILYNTLLNMCADIGLVEEAERLFEDMK--------------LSDYCK--------- 430
             D   YN +++     GL E+A+ +FE+MK              LS Y K         
Sbjct: 355 EPDRASYNIMVDAYGRGGLHEDAQAVFEEMKRLGITPTMKSHMLLLSAYSKAGDVAKCED 414

Query: 431 -----------PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479
                      PD +   +MLN+YG  G      E+   M     A ++     LI   G
Sbjct: 415 IVNELHESGLEPDTFVLNSMLNLYGRLGQFGKMEEVLTAMESGPYATDISTYNILINIYG 474

Query: 480 KARRIDDLVRVFGVSIDRGVKPD 502
           +A   + +  +F     + +KPD
Sbjct: 475 RAGFFEKMEGLFQSLAAKNLKPD 497


>gi|312190399|gb|ADQ43199.1| unknown [Eutrema parvulum]
          Length = 1128

 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 139/266 (52%), Gaps = 1/266 (0%)

Query: 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS 296
           + +EA + F +M +  + P   + + +L  +AK GK + V   ++  + +G KP    ++
Sbjct: 78  MLEEATQCFSKMKRFRVFPKTRSCNGLLHKFAKLGKTDGVKRFFKDMIGAGSKPTVFTYN 137

Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356
           ++     + GD +  R + +EMK  G+ P+ V YN++++  GK G+       F+EM   
Sbjct: 138 IMIDCMWKEGDIEAARGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSM 197

Query: 357 GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEA 416
              PD  T  +LI  + K+      LE +  M+++    + + Y+TL++      ++++A
Sbjct: 198 SCEPDVITYNSLINCFCKSGKLPKGLEFYREMKQSGLKPNVVSYSTLVDAFCKEDMMQQA 257

Query: 417 ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
            + + DM+   +  P+ ++YT++++     GN+ +A  L  EM E+GV  NV+  T LI 
Sbjct: 258 IKFYVDMRRVGHV-PNEFTYTSLVDANCKIGNLSDAFRLANEMLEVGVEWNVVTYTALID 316

Query: 477 CLGKARRIDDLVRVFGVSIDRGVKPD 502
            L  A R+ +  ++FG  +  GV P+
Sbjct: 317 GLCDAERMKEAEKLFGKMVTAGVIPN 342



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 98/391 (25%), Positives = 181/391 (46%), Gaps = 2/391 (0%)

Query: 112 RSTYSYNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTRENALLILNSLKFWQKSY 171
           R  Y  N  +R++ L   +L +CD  +E +      +P     +    +L  L   +++ 
Sbjct: 24  RMYYDANSILREIVLSKAELEECDVFDELWSTRNVCVPGFGVFDALFSVLIDLGMLEEAT 83

Query: 172 FFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITC 231
             F+ +K   +FP       +  K  + G+    +++   +M+    +    TY+ +I C
Sbjct: 84  QCFSKMKRFRVFPKTRSCNGLLHKFAKLGKT-DGVKRFFKDMIGAGSKPTVFTYNIMIDC 142

Query: 232 AKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291
             +    + A   FE M   GL+PD VTY++++D Y K G++++ +  +E   +   +PD
Sbjct: 143 MWKEGDIEAARGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPD 202

Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
            I ++ L   F +SG         +EMK  G++PN+V Y+TL++A  K      A   + 
Sbjct: 203 VITYNSLINCFCKSGKLPKGLEFYREMKQSGLKPNVVSYSTLVDAFCKEDMMQQAIKFYV 262

Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411
           +M   G  P+E T T+L+    K     DA  L   M E     + + Y  L++   D  
Sbjct: 263 DMRRVGHVPNEFTYTSLVDANCKIGNLSDAFRLANEMLEVGVEWNVVTYTALIDGLCDAE 322

Query: 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC 471
            ++EAE+LF  M ++    P+  SY A+++ +    N+D A+EL  E+   G+  +++  
Sbjct: 323 RMKEAEKLFGKM-VTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIQPDLLLY 381

Query: 472 TCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
              I  L    +I+    V     + G+K +
Sbjct: 382 GTFIWGLCGLEKIEAAKVVMNEMQENGIKAN 412



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 99/405 (24%), Positives = 178/405 (43%), Gaps = 41/405 (10%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           +LANEM+   +E + +TY+ +I          EA + F +M   G++P+  +Y+A++  +
Sbjct: 294 RLANEMLEVGVEWNVVTYTALIDGLCDAERMKEAEKLFGKMVTAGVIPNLASYNALIHGF 353

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG--DYDGIRYVLQEMKSLGVQP 325
            K+  ++  L L       G +PD + +     ++G  G    +  + V+ EM+  G++ 
Sbjct: 354 VKAKNMDRALELLNELKGRGIQPDLLLYGTF--IWGLCGLEKIEAAKVVMNEMQENGIKA 411

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
           N ++Y TL++A  K+G P     L +EM E        T   LI    K +    A++ +
Sbjct: 412 NTLIYTTLMDAYFKSGNPTEGLHLLEEMQELDHEVTVVTFCVLIDGLCKNKLVSKAIDYF 471

Query: 386 ERMRENKWPM--DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIY 443
            RM  N + +  +  +Y  +++       V+ A  LFE M   +   PD  +YT++++  
Sbjct: 472 GRM-SNDFGLQPNAAVYTAMIDGLCKENQVKAATTLFEQMA-QEGLVPDRTAYTSLMDGN 529

Query: 444 GSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
              GN+  A+ L ++M+E+G+ ++++  T L+    +  ++          I   + PD+
Sbjct: 530 LKQGNMLEALALRDKMAEIGMKLDLLAYTSLVWGFSQCNQLQKARSFLEEMIGEEILPDE 589

Query: 504 RLC-GCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIK-------E 555
            LC G L     L    E VG     LQ     L+    L  DN+    N         E
Sbjct: 590 VLCIGVLKKHYELGCIDEAVG-----LQSY---LMKHQLLTSDNNNALPNYSDPSLDFFE 641

Query: 556 EFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLYG 600
           E RN + D + +                 L  R H+L+  G  YG
Sbjct: 642 EHRNRVWDLQSE-----------------LLLRTHQLIVRGEAYG 669



 Score = 69.3 bits (168), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 67/310 (21%), Positives = 123/310 (39%), Gaps = 47/310 (15%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
            + Y   +  L    + +  E+L  +MV+  +  +  +Y+ +I    +    D A+E   
Sbjct: 308 VVTYTALIDGLCDAERMKEAEKLFGKMVTAGVIPNLASYNALIHGFVKAKNMDRALELLN 367

Query: 247 RMYKTGLMPDE-----------------------------------VTYSAILDVYAKSG 271
            +   G+ PD                                    + Y+ ++D Y KSG
Sbjct: 368 ELKGRGIQPDLLLYGTFIWGLCGLEKIEAAKVVMNEMQENGIKANTLIYTTLMDAYFKSG 427

Query: 272 KVEEVLSLYERGVASGWKPDPIAFSVL------GKMFGESGDYDGIRYVLQEMKSLGVQP 325
              E L L E       +   + F VL       K+  ++ DY G     +     G+QP
Sbjct: 428 NPTEGLHLLEEMQELDHEVTVVTFCVLIDGLCKNKLVSKAIDYFG-----RMSNDFGLQP 482

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
           N  VY  +++ + K  +   A +LF++M + GL PD    T+L+    K     +AL L 
Sbjct: 483 NAAVYTAMIDGLCKENQVKAATTLFEQMAQEGLVPDRTAYTSLMDGNLKQGNMLEALALR 542

Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445
           ++M E    +D + Y +L+   +    +++A    E+M + +   PD      +L  +  
Sbjct: 543 DKMAEIGMKLDLLAYTSLVWGFSQCNQLQKARSFLEEM-IGEEILPDEVLCIGVLKKHYE 601

Query: 446 GGNVDNAIEL 455
            G +D A+ L
Sbjct: 602 LGCIDEAVGL 611



 Score = 42.4 bits (98), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 24/107 (22%), Positives = 53/107 (49%), Gaps = 1/107 (0%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F  +  + L P  T + ++   +L+ G   + +  L ++M    ++LD + Y++++   
Sbjct: 506 LFEQMAQEGLVPDRTAYTSLMDGNLKQGNMLEAL-ALRDKMAEIGMKLDLLAYTSLVWGF 564

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
            +CN   +A  + E M    ++PDEV    +L  + + G ++E + L
Sbjct: 565 SQCNQLQKARSFLEEMIGEEILPDEVLCIGVLKKHYELGCIDEAVGL 611


>gi|9502386|gb|AAF88093.1|AC025417_21 T12C24.22 [Arabidopsis thaliana]
          Length = 1245

 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 157/317 (49%), Gaps = 1/317 (0%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + YN  +  +       L   L  +M    ++ D  TYSTII    R    D AI  F
Sbjct: 182 DVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLF 241

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           + M   G+    VTY++++    K+GK  +   L +  V+    P+ I F+VL  +F + 
Sbjct: 242 KEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKE 301

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G       + +EM + G+ PN++ YNTL++      +   A ++ D MV +  +PD  T 
Sbjct: 302 GKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTF 361

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
           T+LIK Y   +   D ++++  + +     + + Y+ L+      G ++ AE LF++M +
Sbjct: 362 TSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEM-V 420

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
           S    PD  +Y  +L+     G ++ A+E+FE++ +  + + ++  T +I+ + K  +++
Sbjct: 421 SHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVE 480

Query: 486 DLVRVFGVSIDRGVKPD 502
           D   +F     +GVKP+
Sbjct: 481 DAWNLFCSLPCKGVKPN 497



 Score =  115 bits (288), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 87/335 (25%), Positives = 157/335 (46%), Gaps = 7/335 (2%)

Query: 219 ELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS 278
           E D  T++T+I          EA+   +RM + G  PD VTY++I++   +SG     L 
Sbjct: 145 EPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALD 204

Query: 279 LYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMG 338
           L  +      K D   +S +       G  D    + +EM++ G++ ++V YN+L+  + 
Sbjct: 205 LLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLC 264

Query: 339 KAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFI 398
           KAGK      L  +MV   + P+  T   L+ ++ K    ++A EL++ M       + I
Sbjct: 265 KAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNII 324

Query: 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458
            YNTL++       + EA  +  D+ + + C PD  ++T+++  Y     VD+ +++F  
Sbjct: 325 TYNTLMDGYCMQNRLSEANNML-DLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRN 383

Query: 459 MSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCET 518
           +S+ G+  N +  + L+Q   ++ +I     +F   +  GV PD    G LL    LC+ 
Sbjct: 384 ISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLD--GLCDN 441

Query: 519 S--EDVGKVITCLQQANPKL--VAFLNLIEDNSTG 549
              E   ++   LQ++   L  V +  +IE    G
Sbjct: 442 GKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKG 476



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 113/237 (47%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           I YN  M       +      + + MV N+   D +T++++I         D+ ++ F  
Sbjct: 324 ITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRN 383

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           + K GL+ + VTYS ++  + +SGK++    L++  V+ G  PD + + +L     ++G 
Sbjct: 384 ISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGK 443

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
            +    + ++++   +   +V+Y T++E M K GK   A +LF  +   G+ P+  T T 
Sbjct: 444 LEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTV 503

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
           +I    K     +A  L  +M E+    +   YNTL+      G +  + +L E+MK
Sbjct: 504 MISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMK 560



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/280 (19%), Positives = 123/280 (43%), Gaps = 1/280 (0%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           + +S   +   R   F+  +++ +++   G+  +  T + +++ + +  K     S+  +
Sbjct: 79  VDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGK 138

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
            +  G++PD   F+ L K     G       ++  M   G QP++V YN+++  + ++G 
Sbjct: 139 VMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGD 198

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
             LA  L  +M E  +  D  T + +I    +      A+ L++ M         + YN+
Sbjct: 199 TSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNS 258

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
           L+      G   +   L +DM +S    P+  ++  +L+++   G +  A EL++EM   
Sbjct: 259 LVRGLCKAGKWNDGALLLKDM-VSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITR 317

Query: 463 GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           G++ N++    L+       R+ +   +  + +     PD
Sbjct: 318 GISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPD 357



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 91/184 (49%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           + Y++ ++      + +L E+L  EMVS+ +  D +TY  ++         ++A+E FE 
Sbjct: 394 VTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFED 453

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           + K+ +    V Y+ I++   K GKVE+  +L+      G KP+ + ++V+     + G 
Sbjct: 454 LQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGS 513

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
                 +L++M+  G  PN   YNTL+ A  + G    +  L +EM   G + D  ++  
Sbjct: 514 LSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKM 573

Query: 368 LIKI 371
           +I +
Sbjct: 574 VIDM 577



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 112/242 (46%), Gaps = 6/242 (2%)

Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
           S I+D+     K ++ ++L++  + S   P  + FS        +  ++ +    ++++ 
Sbjct: 52  SGIVDI-----KKDDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLEL 106

Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380
            G+  N+   N ++    +  K   A S+  ++++ G  PD  T   LIK         +
Sbjct: 107 NGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSE 166

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
           A+ L +RM EN    D + YN+++N     G    A  L   M+  +  K D ++Y+ ++
Sbjct: 167 AVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNV-KADVFTYSTII 225

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
           +     G +D AI LF+EM   G+  +V+    L++ L KA + +D   +    + R + 
Sbjct: 226 DSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIV 285

Query: 501 PD 502
           P+
Sbjct: 286 PN 287



 Score = 45.8 bits (107), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 35/171 (20%), Positives = 76/171 (44%), Gaps = 5/171 (2%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F  + S  + P + + Y + +  L    + +   ++  ++  ++++L  + Y+TII   
Sbjct: 415 LFQEMVSHGVLP-DVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGM 473

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +    ++A   F  +   G+ P+ +TY+ ++    K G + E   L  +    G  P+ 
Sbjct: 474 CKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPND 533

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL----VVYNTLLEAMGK 339
             ++ L +     GD      +++EMKS G   +     +V + LL AM +
Sbjct: 534 CTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDMLLSAMKR 584


>gi|449467657|ref|XP_004151539.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Cucumis sativus]
          Length = 637

 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 105/382 (27%), Positives = 167/382 (43%), Gaps = 39/382 (10%)

Query: 158 LLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVS-N 216
           L IL   K   K+   F  IK +   P  T+ YN  +  L      + I +L NE+ S  
Sbjct: 166 LKILGKAKMVNKALSVFYQIKGRKCNPTATV-YNTLILMLMHEGHHEKIHELYNEICSEG 224

Query: 217 EIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV 276
               D ITYS +I+   +   +D A   F+ M + GL P E  Y+ IL +Y K  KVE  
Sbjct: 225 NCSPDTITYSALISAFGKLERYDFAFRLFDEMKENGLHPTEKIYTTILAMYFKLNKVEAA 284

Query: 277 LSLYE----RGVA-------------------------------SGWKPDPIAFSVLGKM 301
           L L E    +G A                                G KPD +  + L  +
Sbjct: 285 LRLVEEMKGKGCAPTVFTYTELIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLINNLINI 344

Query: 302 FGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSL-FDEMVESGLTP 360
            G +G  +    +  +M SL   PN+V YNT+++A+ ++  P    +L F++M  +G+ P
Sbjct: 345 LGRAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFESKAPASEAALWFEKMKANGIAP 404

Query: 361 DEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLF 420
              T   LI  + K    + AL L E M E  +P     Y +L++        E A  LF
Sbjct: 405 SSFTYAILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAANELF 464

Query: 421 EDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK 480
           +++K  +  +     Y  M+  +G+ G + +A++LF EM +LG + +V     L+  + +
Sbjct: 465 QELK-ENCGRSSARVYAVMIKHFGNCGRLSDAVDLFCEMKKLGCSPDVYTYNALMSGMIR 523

Query: 481 ARRIDDLVRVFGVSIDRGVKPD 502
           A  ID+   +     + G  PD
Sbjct: 524 AGMIDEAHSLMRNMRENGCTPD 545



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 127/263 (48%), Gaps = 2/263 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D+ TY  +I C +   L DE     + M ++        +S IL +  K+  V + LS++
Sbjct: 123 DSTTYMALIRCLEESGLVDEMWRTIQDMIRSPCSVGPAEWSEILKILGKAKMVNKALSVF 182

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG-VQPNLVVYNTLLEAMGK 339
            +       P    ++ L  M    G ++ I  +  E+ S G   P+ + Y+ L+ A GK
Sbjct: 183 YQIKGRKCNPTATVYNTLILMLMHEGHHEKIHELYNEICSEGNCSPDTITYSALISAFGK 242

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
             +   A  LFDEM E+GL P EK  T ++ +Y K    + AL L E M+          
Sbjct: 243 LERYDFAFRLFDEMKENGLHPTEKIYTTILAMYFKLNKVEAALRLVEEMKGKGCAPTVFT 302

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           Y  L+     +G V++A  LF +M L D CKPD      ++NI G  G +++A++LF +M
Sbjct: 303 YTELIKGLGKVGRVDDAYSLFFNM-LKDGCKPDVVLINNLINILGRAGRLEDALKLFGKM 361

Query: 460 SELGVAINVMGCTCLIQCLGKAR 482
             L  A NV+    +I+ + +++
Sbjct: 362 DSLQCAPNVVTYNTVIKAIFESK 384



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 89/310 (28%), Positives = 142/310 (45%), Gaps = 4/310 (1%)

Query: 172 FFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITC 231
            FFN +K     P   +  N+     R GR    + +L  +M S +   + +TY+T+I  
Sbjct: 322 LFFNMLK-DGCKPDVVLINNLINILGRAGRLEDAL-KLFGKMDSLQCAPNVVTYNTVIKA 379

Query: 232 AKRCNL-FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
                    EA  WFE+M   G+ P   TY+ ++D + K+ +VE+ L L E     G+ P
Sbjct: 380 IFESKAPASEAALWFEKMKANGIAPSSFTYAILIDGFCKTNRVEKALLLLEEMDEKGFPP 439

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
            P A+  L    G +  Y+    + QE+K    + +  VY  +++  G  G+   A  LF
Sbjct: 440 CPAAYCSLIDSLGRAKRYEAANELFQELKENCGRSSARVYAVMIKHFGNCGRLSDAVDLF 499

Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
            EM + G +PD  T  AL+    +A    +A  L   MREN    D   +N +LN  A  
Sbjct: 500 CEMKKLGCSPDVYTYNALMSGMIRAGMIDEAHSLMRNMRENGCTPDIKSHNIILNGLAKT 559

Query: 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG 470
           G  + A  +F  MK S+   PD  SY  +L+     G  + A +L  EM   G   + + 
Sbjct: 560 GGPKRAIEMFTKMKESEI-MPDAVSYNTILSCLSRAGMFEMAAKLMREMKLKGFEYDSIT 618

Query: 471 CTCLIQCLGK 480
            + +++ +GK
Sbjct: 619 YSSILEAVGK 628



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 117/238 (49%), Gaps = 2/238 (0%)

Query: 256 DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVL 315
           D  TY A++    +SG V+E+    +  + S     P  +S + K+ G++   +    V 
Sbjct: 123 DSTTYMALIRCLEESGLVDEMWRTIQDMIRSPCSVGPAEWSEILKILGKAKMVNKALSVF 182

Query: 316 QEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG-LTPDEKTLTALIKIYGK 374
            ++K     P   VYNTL+  +   G       L++E+   G  +PD  T +ALI  +GK
Sbjct: 183 YQIKGRKCNPTATVYNTLILMLMHEGHHEKIHELYNEICSEGNCSPDTITYSALISAFGK 242

Query: 375 ARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNY 434
                 A  L++ M+EN       +Y T+L M   +  VE A RL E+MK    C P  +
Sbjct: 243 LERYDFAFRLFDEMKENGLHPTEKIYTTILAMYFKLNKVEAALRLVEEMK-GKGCAPTVF 301

Query: 435 SYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFG 492
           +YT ++   G  G VD+A  LF  M + G   +V+    LI  LG+A R++D +++FG
Sbjct: 302 TYTELIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLINNLINILGRAGRLEDALKLFG 359



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 112/275 (40%), Gaps = 41/275 (14%)

Query: 311 IRYVLQEMKSLG----VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
           IR  +Q  K  G     Q +   Y  L+  + ++G          +M+ S  +      +
Sbjct: 104 IRAKIQFFKWAGKRQHFQHDSTTYMALIRCLEESGLVDEMWRTIQDMIRSPCSVGPAEWS 163

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
            ++KI GKA+    AL ++ +++  K      +YNTL+ M    G  E+   L+ ++   
Sbjct: 164 EILKILGKAKMVNKALSVFYQIKGRKCNPTATVYNTLILMLMHEGHHEKIHELYNEICSE 223

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV---------------------- 464
             C PD  +Y+A+++ +G     D A  LF+EM E G+                      
Sbjct: 224 GNCSPDTITYSALISAFGKLERYDFAFRLFDEMKENGLHPTEKIYTTILAMYFKLNKVEA 283

Query: 465 -------------AINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
                        A  V   T LI+ LGK  R+DD   +F   +  G KPD  L   L++
Sbjct: 284 ALRLVEEMKGKGCAPTVFTYTELIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLINNLIN 343

Query: 512 VVSLCETSEDVGKVITCLQ--QANPKLVAFLNLIE 544
           ++      ED  K+   +   Q  P +V +  +I+
Sbjct: 344 ILGRAGRLEDALKLFGKMDSLQCAPNVVTYNTVIK 378


>gi|414887035|tpg|DAA63049.1| TPA: crs2 associated factor1 [Zea mays]
          Length = 668

 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 150/331 (45%), Gaps = 2/331 (0%)

Query: 172 FFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITC 231
            F  +  +  + P  T  YN  +K        +  EQ+ +EM    +  D  TYS ++  
Sbjct: 285 LFLEFFLAGEIKP-RTRAYNALLKGYVRIASLKNAEQVLDEMSQCGVAPDEATYSLLVDA 343

Query: 232 AKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291
             R   ++ A    + M   G+ P    +S IL  +   G  ++  ++     ASG +PD
Sbjct: 344 YTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPD 403

Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
              ++V+   FG+            +M+  G++P++V +NTL++A  K G+   A  LF+
Sbjct: 404 RHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAAELFE 463

Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411
           EM ES   P   T   +I + G+    +    +   M+E     + I Y TL+++    G
Sbjct: 464 EMRESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSG 523

Query: 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC 471
             +EA    E MK +D  KP    Y A++N Y   G  D+A+ + + M   G+ ++++  
Sbjct: 524 RYKEAIDCIEAMK-ADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMKADGLEVSILVL 582

Query: 472 TCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
             LI   G+ RR+ +   V     + G++PD
Sbjct: 583 NSLINAFGEDRRVVEAFSVLQFMRENGLRPD 613



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 140/299 (46%), Gaps = 2/299 (0%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           W+ +      +++  + P   +F  + +   R    +Q    +  EM ++ +  D   Y+
Sbjct: 350 WESARILLKEMEADGVKPSSYVFSRI-LAGFRDRGDWQKAFAVLREMQASGVRPDRHFYN 408

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
            +I    + N    A++ F +M + G+ PD VT++ ++D + K G+ +    L+E    S
Sbjct: 409 VMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAAELFEEMRES 468

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
              P    ++++  + GE   ++G+  +L EMK  G+ PN++ Y TL++  G++G+   A
Sbjct: 469 NCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEA 528

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
               + M   GL P      AL+  Y +   A  AL + + M+ +   +  ++ N+L+N 
Sbjct: 529 IDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMKADGLEVSILVLNSLINA 588

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
             +   V EA  + + M+  +  +PD  +YT ++         D    ++EEM   G A
Sbjct: 589 FGEDRRVVEAFSVLQFMR-ENGLRPDVITYTTLMKALIRVEQFDKVPVIYEEMITSGCA 646



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/362 (23%), Positives = 159/362 (43%), Gaps = 37/362 (10%)

Query: 205 LIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAIL 264
           L+E+L  ++  + +E D   +S +I+   R  L D A+E        GL P     +A++
Sbjct: 211 LLERLLGDLRESRLEPDAPLFSDLISAFARAALPDAALELLASAQAIGLTPRSNAVTALI 270

Query: 265 DVYAKSGKVEEVLSLYE-------------------RG---VAS--------------GW 288
                +G+V E  +L+                    +G   +AS              G 
Sbjct: 271 SALGTAGRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVRIASLKNAEQVLDEMSQCGV 330

Query: 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348
            PD   +S+L   +  +G ++  R +L+EM++ GV+P+  V++ +L      G    A +
Sbjct: 331 APDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFA 390

Query: 349 LFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCA 408
           +  EM  SG+ PD      +I  +GK      A++ + +MRE     D + +NTL++   
Sbjct: 391 VLREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAHC 450

Query: 409 DIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINV 468
             G  + A  LFE+M+ S+ C P   +Y  M+N+ G   + +    +  EM E G+  N+
Sbjct: 451 KGGRHDRAAELFEEMRESN-CPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNI 509

Query: 469 MGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITC 528
           +  T L+   G++ R  + +         G+KP   +   L++  +    ++    V+  
Sbjct: 510 ITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKA 569

Query: 529 LQ 530
           ++
Sbjct: 570 MK 571



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 94/192 (48%), Gaps = 1/192 (0%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F  ++  N  P  T  YN+ +  L     ++ +E + +EM    +  + ITY+T++   
Sbjct: 461 LFEEMRESNC-PPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLVDVY 519

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            R   + EAI+  E M   GL P    Y A+++ YA+ G  +  L++ +   A G +   
Sbjct: 520 GRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMKADGLEVSI 579

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           +  + L   FGE         VLQ M+  G++P+++ Y TL++A+ +  +      +++E
Sbjct: 580 LVLNSLINAFGEDRRVVEAFSVLQFMRENGLRPDVITYTTLMKALIRVEQFDKVPVIYEE 639

Query: 353 MVESGLTPDEKT 364
           M+ SG  PD K 
Sbjct: 640 MITSGCAPDRKA 651



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 78/180 (43%), Gaps = 3/180 (1%)

Query: 325 PNLVVYNTLLEAMGKAGKP---GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
           P+L  Y+ LL ++     P    L   L  ++ ES L PD    + LI  + +A     A
Sbjct: 188 PDLASYSHLLASLLNTRDPPDAALLERLLGDLRESRLEPDAPLFSDLISAFARAALPDAA 247

Query: 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
           LEL    +             L++     G V EAE LF +  L+   KP   +Y A+L 
Sbjct: 248 LELLASAQAIGLTPRSNAVTALISALGTAGRVAEAEALFLEFFLAGEIKPRTRAYNALLK 307

Query: 442 IYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
            Y    ++ NA ++ +EMS+ GVA +    + L+    +A R +    +       GVKP
Sbjct: 308 GYVRIASLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKP 367


>gi|356508736|ref|XP_003523110.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Glycine max]
          Length = 680

 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 112/478 (23%), Positives = 195/478 (40%), Gaps = 50/478 (10%)

Query: 170 SYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTII 229
           +Y   +W++  NL     + Y++ + +L  GR  +L E     ++S    L  +TY+ +I
Sbjct: 122 AYAVVSWLQKHNLCFSYELLYSILINAL--GRSEKLYEAF---LLSQRQVLTPLTYNALI 176

Query: 230 TCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVE--------------- 274
               R    ++A+    +M + G  PD V YS+I+    +S K++               
Sbjct: 177 GACARNGDVEKALNLMSKMRRDGYQPDFVNYSSIIQYLTRSNKIDSPILQKLYAEIETDK 236

Query: 275 ----------------------EVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIR 312
                                   +       ++G  P P     +    G SG      
Sbjct: 237 IEIDGHLMNDIIVGFSKAGDPTRAMRFLAMAQSNGLNPKPSTLVAVILALGNSGRTHEAE 296

Query: 313 YVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIY 372
            + +E++  G++P    YN LL+   + G    A  +  EM ++G+ PDE+T + LI +Y
Sbjct: 297 ALFEEIRENGLEPRTRAYNALLKGYVRTGSLKDAEFVVSEMEKAGVKPDEQTYSLLIDVY 356

Query: 373 GKA-RWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
             A RW    + L E    N  P  ++    L N   D G  +++ ++ +DMK S   +P
Sbjct: 357 AHAGRWESARIVLKEMEASNVQPNSYVFSRILANY-RDKGEWQKSFQVLKDMK-SSGVQP 414

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           D + Y  M++ +G    +D+A+  FE M   G+  +++    LI C  K+ R D    +F
Sbjct: 415 DRHFYNVMIDTFGKYNCLDHAMATFERMLSEGIPPDIVTWNTLIDCHCKSGRHDMAEELF 474

Query: 492 GVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQA--NPKLVAFLNLIE--DNS 547
                RG  P       +++ +   +  E V   ++ +Q     P  + +  L++    S
Sbjct: 475 SEMQQRGYSPCITTYNIMINSMGEQQRWEQVTAFLSKMQSQGLQPNSITYTTLVDVYGKS 534

Query: 548 TGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGL 605
             F +  E    V+K T         N LI+    R L+E A     L T  GL P L
Sbjct: 535 GRFSDAIECLE-VLKSTGFKPTSTMYNALINAYAQRGLSELAVNAFRLMTTEGLTPSL 591



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 82/307 (26%), Positives = 143/307 (46%), Gaps = 5/307 (1%)

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           EA   FE + + GL P    Y+A+L  Y ++G +++   +      +G KPD   +S+L 
Sbjct: 294 EAEALFEEIRENGLEPRTRAYNALLKGYVRTGSLKDAEFVVSEMEKAGVKPDEQTYSLLI 353

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
            ++  +G ++  R VL+EM++  VQPN  V++ +L      G+   +  +  +M  SG+ 
Sbjct: 354 DVYAHAGRWESARIVLKEMEASNVQPNSYVFSRILANYRDKGEWQKSFQVLKDMKSSGVQ 413

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
           PD      +I  +GK      A+  +ERM     P D + +NTL++     G  + AE L
Sbjct: 414 PDRHFYNVMIDTFGKYNCLDHAMATFERMLSEGIPPDIVTWNTLIDCHCKSGRHDMAEEL 473

Query: 420 FEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479
           F +M+   Y  P   +Y  M+N  G     +       +M   G+  N +  T L+   G
Sbjct: 474 FSEMQQRGYS-PCITTYNIMINSMGEQQRWEQVTAFLSKMQSQGLQPNSITYTTLVDVYG 532

Query: 480 KARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVS---LCETSEDVGKVITCLQQANPKL 536
           K+ R  D +    V    G KP   +   L++  +   L E + +  +++T  +   P L
Sbjct: 533 KSGRFSDAIECLEVLKSTGFKPTSTMYNALINAYAQRGLSELAVNAFRLMTT-EGLTPSL 591

Query: 537 VAFLNLI 543
           +A  +LI
Sbjct: 592 LALNSLI 598



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/374 (24%), Positives = 162/374 (43%), Gaps = 4/374 (1%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           F    +S  L P  +    V +     GR  +  E L  E+  N +E     Y+ ++   
Sbjct: 263 FLAMAQSNGLNPKPSTLVAVILALGNSGRTHE-AEALFEEIRENGLEPRTRAYNALLKGY 321

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            R     +A      M K G+ PDE TYS ++DVYA +G+ E    + +   AS  +P+ 
Sbjct: 322 VRTGSLKDAEFVVSEMEKAGVKPDEQTYSLLIDVYAHAGRWESARIVLKEMEASNVQPNS 381

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
             FS +   + + G++     VL++MKS GVQP+   YN +++  GK      A + F+ 
Sbjct: 382 YVFSRILANYRDKGEWQKSFQVLKDMKSSGVQPDRHFYNVMIDTFGKYNCLDHAMATFER 441

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M+  G+ PD  T   LI  + K+     A EL+  M++  +      YN ++N   +   
Sbjct: 442 MLSEGIPPDIVTWNTLIDCHCKSGRHDMAEELFSEMQQRGYSPCITTYNIMINSMGEQQR 501

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
            E+       M+ S   +P++ +YT ++++YG  G   +AIE  E +   G         
Sbjct: 502 WEQVTAFLSKMQ-SQGLQPNSITYTTLVDVYGKSGRFSDAIECLEVLKSTGFKPTSTMYN 560

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQA 532
            LI    +    +  V  F +    G+ P       L++         +   V+  +++ 
Sbjct: 561 ALINAYAQRGLSELAVNAFRLMTTEGLTPSLLALNSLINAFGEDRRDAEAFAVLQYMKEN 620

Query: 533 N--PKLVAFLNLIE 544
           N  P +V +  L++
Sbjct: 621 NIEPDVVTYTTLMK 634



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/268 (29%), Positives = 133/268 (49%), Gaps = 6/268 (2%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLAN--EMVSNEIELDNIT 224
           WQKS+     +KS  + P +  FYNV + +  FG+   L   +A    M+S  I  D +T
Sbjct: 397 WQKSFQVLKDMKSSGVQP-DRHFYNVMIDT--FGKYNCLDHAMATFERMLSEGIPPDIVT 453

Query: 225 YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
           ++T+I C  +    D A E F  M + G  P   TY+ +++   +  + E+V +   +  
Sbjct: 454 WNTLIDCHCKSGRHDMAEELFSEMQQRGYSPCITTYNIMINSMGEQQRWEQVTAFLSKMQ 513

Query: 285 ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344
           + G +P+ I ++ L  ++G+SG +      L+ +KS G +P   +YN L+ A  + G   
Sbjct: 514 SQGLQPNSITYTTLVDVYGKSGRFSDAIECLEVLKSTGFKPTSTMYNALINAYAQRGLSE 573

Query: 345 LARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
           LA + F  M   GLTP    L +LI  +G+ R   +A  + + M+EN    D + Y TL+
Sbjct: 574 LAVNAFRLMTTEGLTPSLLALNSLINAFGEDRRDAEAFAVLQYMKENNIEPDVVTYTTLM 633

Query: 405 NMCADIGLVEEAERLFEDMKLSDYCKPD 432
                +   ++   ++E+M  S  C PD
Sbjct: 634 KALIRVEKFQKVPAVYEEMVASG-CTPD 660



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/302 (22%), Positives = 142/302 (47%), Gaps = 1/302 (0%)

Query: 212 EMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG 271
           EM ++ ++ ++  +S I+   +    + ++ +  + M  +G+ PD   Y+ ++D + K  
Sbjct: 371 EMEASNVQPNSYVFSRILANYRDKGEWQKSFQVLKDMKSSGVQPDRHFYNVMIDTFGKYN 430

Query: 272 KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYN 331
            ++  ++ +ER ++ G  PD + ++ L     +SG +D    +  EM+  G  P +  YN
Sbjct: 431 CLDHAMATFERMLSEGIPPDIVTWNTLIDCHCKSGRHDMAEELFSEMQQRGYSPCITTYN 490

Query: 332 TLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN 391
            ++ +MG+  +     +   +M   GL P+  T T L+ +YGK+    DA+E  E ++  
Sbjct: 491 IMINSMGEQQRWEQVTAFLSKMQSQGLQPNSITYTTLVDVYGKSGRFSDAIECLEVLKST 550

Query: 392 KWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDN 451
            +     +YN L+N  A  GL E A   F  M  ++   P   +  +++N +G       
Sbjct: 551 GFKPTSTMYNALINAYAQRGLSELAVNAFRLMT-TEGLTPSLLALNSLINAFGEDRRDAE 609

Query: 452 AIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
           A  + + M E  +  +V+  T L++ L +  +   +  V+   +  G  PD +    L S
Sbjct: 610 AFAVLQYMKENNIEPDVVTYTTLMKALIRVEKFQKVPAVYEEMVASGCTPDRKARAMLRS 669

Query: 512 VV 513
            +
Sbjct: 670 AL 671


>gi|222623994|gb|EEE58126.1| hypothetical protein OsJ_09025 [Oryza sativa Japonica Group]
          Length = 1269

 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 86/365 (23%), Positives = 181/365 (49%), Gaps = 4/365 (1%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           ++++ F   ++   L P +   Y   +  L   R+    + L +EM   E++ + + Y+ 
Sbjct: 274 EEAFGFKKDMEDYGLVP-DGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYAN 332

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           +I    R    DEA +  + M   G+ P+++TY  ++    K G+++    L ++ V   
Sbjct: 333 LIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDS 392

Query: 288 WKPDPIAFS-VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
            +PD I ++ ++   F      D  R +L EM++ G+ PN+  Y+ ++  + ++G+P  A
Sbjct: 393 HRPDTITYNLIIEGHFRHHSKKDAFR-LLSEMENAGISPNVYTYSIMIHGLCQSGEPEKA 451

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
             L +EM   GL P+      LI  Y +      A E++++M +     D   YN+L+  
Sbjct: 452 SDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFG 511

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
            + +G VEE+ + F  M+      P+ ++Y+ +++ Y   G++++A +L + M + G+  
Sbjct: 512 LSKVGRVEESTKYFAQMQERGLL-PNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKP 570

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           N +    L++   K+  I+ +   F   +D+GV  D+R+ G L+  +S     E   +V+
Sbjct: 571 NDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVL 630

Query: 527 TCLQQ 531
           + +++
Sbjct: 631 SGIEK 635



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 148/303 (48%), Gaps = 1/303 (0%)

Query: 201 RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTY 260
           R+F   +++  EM      L+ +TY+ +I    R    +EA  + + M   GL+PD  TY
Sbjct: 236 REFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTY 295

Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
            A+++   KS +  E  +L +    +  KP+ + ++ L   F   G+ D    +++EM +
Sbjct: 296 GALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVA 355

Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380
            GVQPN + Y+ L+  + K G+   A  L  +MV     PD  T   +I+ + +    KD
Sbjct: 356 AGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKD 415

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
           A  L   M       +   Y+ +++     G  E+A  L E+M  +   KP+ + Y  ++
Sbjct: 416 AFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMT-TKGLKPNAFVYAPLI 474

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
           + Y   GNV  A E+F++M+++ V  ++     LI  L K  R+++  + F    +RG+ 
Sbjct: 475 SGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLL 534

Query: 501 PDD 503
           P++
Sbjct: 535 PNE 537



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/324 (22%), Positives = 148/324 (45%), Gaps = 3/324 (0%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           ++S  +F  ++ + L P E  +  +    L+ G   +  EQL   M+   ++ +++ Y  
Sbjct: 519 EESTKYFAQMQERGLLPNEFTYSGLIHGYLKNG-DLESAEQLVQRMLDTGLKPNDVIYID 577

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           ++    + +  ++    F+ M   G+M D   Y  ++   + SG +E    +      +G
Sbjct: 578 LLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNG 637

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
             PD   +S L     ++ D +    +L EM   GV PN+V YN L++ + K+G    AR
Sbjct: 638 SVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYAR 697

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
           ++F+ ++  GL P+  T T+LI    K     +A  L+  M       D  +Y+ L   C
Sbjct: 698 NVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGC 757

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
           +  G +E+A  L E+M L  +      S+  +++ +   G +   ++L   +   G+  N
Sbjct: 758 SSAGDLEQAMFLIEEMFLRGHASIS--SFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPN 815

Query: 468 VMGCTCLIQCLGKARRIDDLVRVF 491
            +    +I  L +A ++ ++  +F
Sbjct: 816 ALTIENIISGLSEAGKLSEVHTIF 839



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 139/318 (43%), Gaps = 7/318 (2%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           I Y+  ++ L    Q      L  +MV +    D ITY+ II    R +   +A      
Sbjct: 363 ITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSE 422

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M   G+ P+  TYS ++    +SG+ E+   L E     G KP+   ++ L   +   G+
Sbjct: 423 MENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGN 482

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
                 +  +M  + V P+L  YN+L+  + K G+   +   F +M E GL P+E T + 
Sbjct: 483 VSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSG 542

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           LI  Y K    + A +L +RM +     + ++Y  LL        +E+    F+ M L  
Sbjct: 543 LIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSM-LDQ 601

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
               DN  Y  +++   S GN++ A  +   + + G   +V   + LI  L K     D 
Sbjct: 602 GVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTA---DR 658

Query: 488 VRVFGVSID---RGVKPD 502
            + FG+  +   +GV P+
Sbjct: 659 EKAFGILDEMSKKGVDPN 676



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 78/400 (19%), Positives = 172/400 (43%), Gaps = 41/400 (10%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           ++ ++M    +  D   Y+++I    +    +E+ ++F +M + GL+P+E TYS ++  Y
Sbjct: 488 EIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGY 547

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            K+G +E    L +R + +G KP+ + +  L + + +S D + +    + M   GV  + 
Sbjct: 548 LKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDN 607

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
            +Y  L+  +  +G    A  +   + ++G  PD    ++LI    K    + A  + + 
Sbjct: 608 RIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDE 667

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           M +     + + YN L++     G +  A  +F  + L+    P+  +YT++++     G
Sbjct: 668 MSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSI-LAKGLVPNCVTYTSLIDGSCKVG 726

Query: 448 NVDNAIELFEEMSELGV-------AINVMGCTC--------------------------- 473
           ++ NA  L+ EM   G+       ++   GC+                            
Sbjct: 727 DISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHASISSFNN 786

Query: 474 LIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN 533
           L+    K  ++ + +++  V + RG+ P+      ++S +S      +V  +   LQQ  
Sbjct: 787 LVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKT 846

Query: 534 PKLVA------FLNLIEDNSTGFENIKEEFRNVIKDTEVD 567
            +  A      F+++I       + + +  R+  K+  +D
Sbjct: 847 SESAARHFSSLFMDMINQGKIPLDVVDDMIRDHCKEGNLD 886



 Score = 46.6 bits (109), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 55/270 (20%), Positives = 107/270 (39%), Gaps = 22/270 (8%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           FN I ++ L P    + ++   S + G        L NEM++  I  D   YS + T   
Sbjct: 700 FNSILAKGLVPNCVTYTSLIDGSCKVGDISNAF-YLYNEMLATGITPDAFVYSVLTTGCS 758

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
                ++A+   E M+  G      +++ ++D + K GK++E L L    +  G  P+ +
Sbjct: 759 SAGDLEQAMFLIEEMFLRG-HASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNAL 817

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
               +     E+G    +  +  E++    +     ++                SLF +M
Sbjct: 818 TIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFS----------------SLFMDM 861

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
           +  G  P +  +  +I+ + K      AL L + +     PM    Y  +++     G +
Sbjct: 862 INQGKIPLD-VVDDMIRDHCKEGNLDKALMLRDVIVAKSAPMGCSSYLAIVDNLCRKGKL 920

Query: 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIY 443
            EA  L ++M      +P   +  A+L I+
Sbjct: 921 SEALNLLKEMDKRGNLQP---TLVALLGIF 947



 Score = 45.4 bits (106), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 3/135 (2%)

Query: 369 IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428
           ++ Y K R    A ++   MRE    ++ + YN L+      G VEEA    +DM+  DY
Sbjct: 229 LEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDME--DY 286

Query: 429 -CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
              PD ++Y A++N        + A  L +EMS   +  NV+    LI    +    D+ 
Sbjct: 287 GLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEA 346

Query: 488 VRVFGVSIDRGVKPD 502
            ++    +  GV+P+
Sbjct: 347 FKMIKEMVAAGVQPN 361


>gi|255661214|gb|ACU25776.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
          Length = 426

 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 88/283 (31%), Positives = 145/283 (51%), Gaps = 7/283 (2%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D  TYST+IT   +  LFD A+ W ++M +  +  D V YS ++++  K     + +S++
Sbjct: 8   DRYTYSTLITHFGKEGLFDGALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
            +   SG  PD +A++ +  +FG++  +   R ++ EM+  GV PN V Y+TLL    + 
Sbjct: 68  SKLKRSGITPDLVAYNSMINVFGKARLFREARSLISEMRVAGVMPNTVSYSTLLTMYVEN 127

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
            +   A S+F EM E     D  T   +I +YG+   AK+A +L+  MR+     + + Y
Sbjct: 128 KRFREALSVFAEMREIKCLLDLTTCNIMIDVYGQLDMAKEADKLFWGMRKMGIEPNVVSY 187

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           NTLL +  D  L  EA  LF  M+  D  + +  +Y  M+ IYG     + A  L +EM 
Sbjct: 188 NTLLRVYGDAELFGEAIHLFRLMQRKDIVQ-NVVTYNTMMMIYGKTLEHEKANNLIQEMQ 246

Query: 461 ELGVAINVMGCTCLIQCLGKARRID------DLVRVFGVSIDR 497
             G+  N +  + +I   GK  ++D        +RV G+ ID+
Sbjct: 247 NRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRVSGIEIDQ 289



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/364 (22%), Positives = 168/364 (46%), Gaps = 6/364 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K   + P + + YN  +      R F+    L +EM    +  + ++YS
Sbjct: 60  YSKAISIFSKLKRSGITP-DLVAYNSMINVFGKARLFREARSLISEMRVAGVMPNTVSYS 118

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY +    +E   L+      
Sbjct: 119 TLLTMYVENKRFREALSVFAEMREIKCLLDLTTCNIMIDVYGQLDMAKEADKLFWGMRKM 178

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   +  N+V YNT++   GK  +   A
Sbjct: 179 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKDIVQNVVTYNTMMMIYGKTLEHEKA 238

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R +   +D +LY T++  
Sbjct: 239 NNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRVSGIEIDQVLYQTMIVA 298

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K     +P+N      ++I    G ++ A  +F +  + G   
Sbjct: 299 YERAGLVAHAKRLLHELK-----RPNNIPRDTAIHILAGAGRIEEATWVFRQAIDAGEVK 353

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           ++     +I    K ++  ++V VF      G  PD  +   +L+        E+   V 
Sbjct: 354 DITVFERMISLFSKYKKYTNVVEVFEKMRGLGYFPDSNVIAVVLNAYGKLHKFENANGVY 413

Query: 527 TCLQ 530
             +Q
Sbjct: 414 MEMQ 417



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/271 (23%), Positives = 139/271 (51%), Gaps = 1/271 (0%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
            +M  + +  D + YS +I  +++   + +AI  F ++ ++G+ PD V Y+++++V+ K+
Sbjct: 33  QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSKLKRSGITPDLVAYNSMINVFGKA 92

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
               E  SL      +G  P+ +++S L  M+ E+  +     V  EM+ +    +L   
Sbjct: 93  RLFREARSLISEMRVAGVMPNTVSYSTLLTMYVENKRFREALSVFAEMREIKCLLDLTTC 152

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
           N +++  G+      A  LF  M + G+ P+  +   L+++YG A    +A+ L+  M+ 
Sbjct: 153 NIMIDVYGQLDMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR 212

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
                + + YNT++ +       E+A  L ++M+ +   +P++ +Y+ +++I+G  G +D
Sbjct: 213 KDIVQNVVTYNTMMMIYGKTLEHEKANNLIQEMQ-NRGIEPNSITYSTIISIWGKVGKLD 271

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
            A  LF+++   G+ I+ +    +I    +A
Sbjct: 272 RAAMLFQKLRVSGIEIDQVLYQTMIVAYERA 302



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 127/261 (48%), Gaps = 1/261 (0%)

Query: 252 GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGI 311
            L PD  TYS ++  + K G  +  LS  ++        D + +S L ++  +  DY   
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDGALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 312 RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371
             +  ++K  G+ P+LV YN+++   GKA     ARSL  EM  +G+ P+  + + L+ +
Sbjct: 64  ISIFSKLKRSGITPDLVAYNSMINVFGKARLFREARSLISEMRVAGVMPNTVSYSTLLTM 123

Query: 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
           Y + +  ++AL ++  MRE K  +D    N ++++   + + +EA++LF  M+     +P
Sbjct: 124 YVENKRFREALSVFAEMREIKCLLDLTTCNIMIDVYGQLDMAKEADKLFWGMRKMG-IEP 182

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           +  SY  +L +YG       AI LF  M    +  NV+    ++   GK    +    + 
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKDIVQNVVTYNTMMMIYGKTLEHEKANNLI 242

Query: 492 GVSIDRGVKPDDRLCGCLLSV 512
               +RG++P+      ++S+
Sbjct: 243 QEMQNRGIEPNSITYSTIISI 263



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 52/246 (21%), Positives = 111/246 (45%), Gaps = 31/246 (12%)

Query: 218 IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL 277
           IE + ++Y+T++       LF EAI  F  M +  ++ + VTY+ ++ +Y K+ + E+  
Sbjct: 180 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKDIVQNVVTYNTMMMIYGKTLEHEKAN 239

Query: 278 SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
           +L +     G +P+ I +S +  ++G+ G  D    + Q+++  G++ + V+Y T++ A 
Sbjct: 240 NLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRVSGIEIDQVLYQTMIVAY 299

Query: 338 GKAGKPGLARSLFDEM-------------------------------VESGLTPDEKTLT 366
            +AG    A+ L  E+                               +++G   D     
Sbjct: 300 ERAGLVAHAKRLLHELKRPNNIPRDTAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFE 359

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
            +I ++ K +   + +E++E+MR   +  D  +   +LN    +   E A  ++ +M+  
Sbjct: 360 RMISLFSKYKKYTNVVEVFEKMRGLGYFPDSNVIAVVLNAYGKLHKFENANGVYMEMQDE 419

Query: 427 DYCKPD 432
               PD
Sbjct: 420 GCVFPD 425



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 88/191 (46%), Gaps = 3/191 (1%)

Query: 355 ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
           +  L+PD  T + LI  +GK      AL   ++M +++ P D +LY+ L+ +   +    
Sbjct: 2   DRALSPDRYTYSTLITHFGKEGLFDGALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
           +A  +F  +K S    PD  +Y +M+N++G       A  L  EM   GV  N +  + L
Sbjct: 62  KAISIFSKLKRSG-ITPDLVAYNSMINVFGKARLFREARSLISEMRVAGVMPNTVSYSTL 120

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN- 533
           +    + +R  + + VF    +     D   C  ++ V    + +++  K+   +++   
Sbjct: 121 LTMYVENKRFREALSVFAEMREIKCLLDLTTCNIMIDVYGQLDMAKEADKLFWGMRKMGI 180

Query: 534 -PKLVAFLNLI 543
            P +V++  L+
Sbjct: 181 EPNVVSYNTLL 191


>gi|125558723|gb|EAZ04259.1| hypothetical protein OsI_26403 [Oryza sativa Indica Group]
          Length = 528

 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 97/345 (28%), Positives = 155/345 (44%), Gaps = 37/345 (10%)

Query: 194 MKSLRFGRQFQLIEQLANEM-VSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTG 252
           + SL   R+    E L  E  ++ EI+     Y+ ++    +      A +  + M + G
Sbjct: 130 ISSLGSARRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCG 189

Query: 253 LMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIR 312
           + PDE TYS ++D Y ++G+ E    L +   A G KP    FS +   F + G++    
Sbjct: 190 VAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAF 249

Query: 313 YVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIY 372
            VL+EM + GV+P+   YN +++  GK    G A   FD M E G+ PD  T   LI  +
Sbjct: 250 AVLREMHASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAH 309

Query: 373 GKARWAKDALELWERMRENKWPMDFILYNTLLN-------------MCADI---GLV--- 413
            K      A+EL++ MRE+  P+    YN ++N             M A++   GLV   
Sbjct: 310 CKGGRHDRAIELFDEMRESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNI 369

Query: 414 ----------------EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE 457
                           +EA    E MK +D  KP +  Y A++N Y   G  D+A+ + +
Sbjct: 370 ITYTTLVDVYGRSGRFKEAVDCIEAMK-ADGLKPSSTMYHALVNAYAQRGLADHALNVVK 428

Query: 458 EMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            M   G+  + +    LI   G+ RRI +   V     + G++PD
Sbjct: 429 AMRADGLEASTVVLNSLINAFGEDRRIAEAFSVLQFMKENGLRPD 473



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/299 (23%), Positives = 141/299 (47%), Gaps = 2/299 (0%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           W+ +      +++  + P   +F  + +   R   ++Q    +  EM ++ +  D   Y+
Sbjct: 210 WESARILLKEMEADGVKPSSYVFSRI-LAGFRDRGEWQKAFAVLREMHASGVRPDRHFYN 268

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
            +I    + N    A++ F+RM + G+ PD VT++ ++D + K G+ +  + L++    S
Sbjct: 269 VMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEMRES 328

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
                   ++++  + GE   ++G+  +L EMK  G+ PN++ Y TL++  G++G+   A
Sbjct: 329 NCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEA 388

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
               + M   GL P      AL+  Y +   A  AL + + MR +      ++ N+L+N 
Sbjct: 389 VDCIEAMKADGLKPSSTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNSLINA 448

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
             +   + EA  + + MK  +  +PD  +YT ++         +    ++EEM   G A
Sbjct: 449 FGEDRRIAEAFSVLQFMK-ENGLRPDVITYTTLMKALIRVEQFEKVPVIYEEMITSGCA 506



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 98/196 (50%), Gaps = 1/196 (0%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F+ ++  N  P+ T  YN+ +  L   ++++ +E +  EM    +  + ITY+T++   
Sbjct: 321 LFDEMRESNC-PLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVY 379

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            R   F EA++  E M   GL P    Y A+++ YA+ G  +  L++ +   A G +   
Sbjct: 380 GRSGRFKEAVDCIEAMKADGLKPSSTMYHALVNAYAQRGLADHALNVVKAMRADGLEAST 439

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           +  + L   FGE         VLQ MK  G++P+++ Y TL++A+ +  +      +++E
Sbjct: 440 VVLNSLINAFGEDRRIAEAFSVLQFMKENGLRPDVITYTTLMKALIRVEQFEKVPVIYEE 499

Query: 353 MVESGLTPDEKTLTAL 368
           M+ SG  PD K    L
Sbjct: 500 MITSGCAPDRKARAML 515



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 109/264 (41%), Gaps = 40/264 (15%)

Query: 266 VYAKSGKVE-EVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG-- 322
           V A  G ++ EV S+Y  G  S  +PD   FS L   F  +   D    +L   +++G  
Sbjct: 61  VVAARGVIDCEVPSMYCGGGESRLEPDAPLFSDLISAFARARLPDAALELLASAQAIGLT 120

Query: 323 ----------------------------------VQPNLVVYNTLLEAMGKAGKPGLARS 348
                                             ++P    YN LL+   K G    A  
Sbjct: 121 PRSNAVTALISSLGSARRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQ 180

Query: 349 LFDEMVESGLTPDEKTLTALIKIYGKA-RWAKDALELWERMRENKWPMDFILYNTLLNMC 407
           + DEM + G+ PDE T + L+  Y +A RW    + L E   +   P  ++ ++ +L   
Sbjct: 181 VLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYV-FSRILAGF 239

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
            D G  ++A  +  +M  S   +PD + Y  M++ +G    + +A++ F+ M E G+  +
Sbjct: 240 RDRGEWQKAFAVLREMHASG-VRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPD 298

Query: 468 VMGCTCLIQCLGKARRIDDLVRVF 491
           V+    LI    K  R D  + +F
Sbjct: 299 VVTWNTLIDAHCKGGRHDRAIELF 322



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 65/147 (44%)

Query: 355 ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
           ES L PD    + LI  + +AR    ALEL    +             L++       V 
Sbjct: 81  ESRLEPDAPLFSDLISAFARARLPDAALELLASAQAIGLTPRSNAVTALISSLGSARRVA 140

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
           EAE LF +  L+   KP   +Y A+L  Y   G++ NA ++ +EMS+ GVA +    + L
Sbjct: 141 EAEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLL 200

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKP 501
           +    +A R +    +       GVKP
Sbjct: 201 VDAYTRAGRWESARILLKEMEADGVKP 227


>gi|83744088|gb|ABC42330.1| PPR protein [Oryza sativa Indica Group]
          Length = 791

 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 142/292 (48%), Gaps = 1/292 (0%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
           +EM+   I  D +TY++II    +    D+A+E    M K G+MPD +TY++IL  Y  S
Sbjct: 220 HEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSS 279

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
           G+ +E +   ++  + G +PD + +S+L     ++G     R +   M   G++P +  Y
Sbjct: 280 GQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTY 339

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
            TLL+     G       L D MV +G+ PD    + LI  Y        A+ ++ +MR+
Sbjct: 340 GTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYANQGKVDQAMLVFSKMRQ 399

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
                + + Y  ++ +    G VE+A   FE M + +   P N  Y ++++   +    +
Sbjct: 400 QGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQM-IDEGLSPGNIVYNSLIHGLCTCNKWE 458

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            A EL  EM + G+ +N +    +I    K  R+ +  ++F + +  GVKP+
Sbjct: 459 RAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPN 510



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 169/369 (45%), Gaps = 37/369 (10%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           K+Y  ++ +  + + P + + YN  + +L   +      ++ N MV N +  D +TY++I
Sbjct: 214 KAYSTYHEMLDRGILP-DVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSI 272

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
           +          EAI + ++M   G+ PD VTYS ++D   K+G+  E   +++     G 
Sbjct: 273 LHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGL 332

Query: 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348
           KP+   +  L + +   G    +  +L  M   G+ P+  V++ L+ A    GK   A  
Sbjct: 333 KPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYANQGKVDQAML 392

Query: 349 LFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE------------------ 390
           +F +M + GL P+  T  A+I I  K+   +DA+  +E+M +                  
Sbjct: 393 VFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLC 452

Query: 391 --NKWP---------------MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDN 433
             NKW                ++ I +N++++     G V E+E+LFE M +    KP+ 
Sbjct: 453 TCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELM-VRIGVKPNV 511

Query: 434 YSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGV 493
            +Y  ++N Y   G +D A++L   M  +G+  N +  + LI    K  R++D + +F  
Sbjct: 512 ITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKE 571

Query: 494 SIDRGVKPD 502
               GV PD
Sbjct: 572 MESSGVSPD 580



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 148/319 (46%), Gaps = 2/319 (0%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F+ +  + L P E   Y   ++          +  L + MV N I  D+  +S +I   
Sbjct: 323 IFDSMTKRGLKP-EITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAY 381

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
                 D+A+  F +M + GL P+ VTY A++ +  KSG+VE+ +  +E+ +  G  P  
Sbjct: 382 ANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGN 441

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           I ++ L         ++    ++ EM   G+  N + +N+++++  K G+   +  LF+ 
Sbjct: 442 IVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFEL 501

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           MV  G+ P+  T   LI  Y  A    +A++L   M       + + Y+TL+N    I  
Sbjct: 502 MVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISR 561

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
           +E+A  LF++M+ S    PD  +Y  +L           A EL+  ++E G  I +    
Sbjct: 562 MEDALVLFKEME-SSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYN 620

Query: 473 CLIQCLGKARRIDDLVRVF 491
            ++  L K +  DD +++F
Sbjct: 621 IILHGLCKNKLTDDALQMF 639



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 146/302 (48%), Gaps = 8/302 (2%)

Query: 169 KSYFFFNWIKSQNLFPMETIF---YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITY 225
           ++   F+ ++ Q L P    +     +  KS R        EQ+ +E +S      NI Y
Sbjct: 389 QAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSP----GNIVY 444

Query: 226 STIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVA 285
           +++I     CN ++ A E    M   G+  + + +++I+D + K G+V E   L+E  V 
Sbjct: 445 NSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVR 504

Query: 286 SGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGL 345
            G KP+ I ++ L   +  +G  D    +L  M S+G++PN V Y+TL+    K  +   
Sbjct: 505 IGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMED 564

Query: 346 ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405
           A  LF EM  SG++PD  T   +++   + R    A EL+ R+ E+   ++   YN +L+
Sbjct: 565 ALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILH 624

Query: 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
                 L ++A ++F+++ L D  K +  ++  M++     G  D A +LF   S  G+ 
Sbjct: 625 GLCKNKLTDDALQMFQNLCLMDL-KLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLV 683

Query: 466 IN 467
            N
Sbjct: 684 PN 685



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 141/280 (50%), Gaps = 6/280 (2%)

Query: 190 YNVTMKSL----RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           YN+ +K L    R     +L+  +A++        D ++Y+T+I    +    D+A   +
Sbjct: 161 YNILLKGLCDENRSQEALELLHMMADDRGGGSPP-DVVSYTTVINGFFKEGDSDKAYSTY 219

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
             M   G++PD VTY++I+    K+  +++ + +    V +G  PD + ++ +   +  S
Sbjct: 220 HEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSS 279

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G        L++M+S GV+P++V Y+ L++ + K G+   AR +FD M + GL P+  T 
Sbjct: 280 GQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTY 339

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
             L++ Y       +   L + M  N    D  +++ L+   A+ G V++A  +F  M+ 
Sbjct: 340 GTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYANQGKVDQAMLVFSKMRQ 399

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
                P+  +Y A++ I    G V++A+  FE+M + G++
Sbjct: 400 QGL-NPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLS 438



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 84/387 (21%), Positives = 160/387 (41%), Gaps = 77/387 (19%)

Query: 215 SNEIELDNITYSTIITCAKRCNLFD----------------EAIEW-------------- 244
           ++E+  D  TY  +I C  R    D                +AI +              
Sbjct: 80  ADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTS 139

Query: 245 ------FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY-----ERGVASGWKPDPI 293
                   RM + G +P+  +Y+ +L       + +E L L      +RG   G  PD +
Sbjct: 140 DAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRG--GGSPPDVV 197

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
           +++ +   F + GD D       EM   G+ P++V YN+++ A+ KA     A  + + M
Sbjct: 198 SYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTM 257

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
           V++G+ PD  T  +++  Y  +   K+A+   ++MR +    D + Y+ L++     G  
Sbjct: 258 VKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRC 317

Query: 414 EEAERLFE----------------------------------DMKLSDYCKPDNYSYTAM 439
            EA ++F+                                  D+ + +   PD+Y ++ +
Sbjct: 318 MEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSIL 377

Query: 440 LNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGV 499
           +  Y + G VD A+ +F +M + G+  N +    +I  L K+ R++D +  F   ID G+
Sbjct: 378 ICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGL 437

Query: 500 KPDDRLCGCLLSVVSLCETSEDVGKVI 526
            P + +   L+  +  C   E   ++I
Sbjct: 438 SPGNIVYNSLIHGLCTCNKWERAEELI 464



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 125/277 (45%), Gaps = 8/277 (2%)

Query: 241 AIEWFERMYKTG---LMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS- 296
           A+  + RM + G   + PD  TY  ++    ++G+++   +     +  G++ D IAF+ 
Sbjct: 68  AVSRYNRMARAGADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTP 127

Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVE- 355
           +L  +  +    D +  VL+ M  LG  PN+  YN LL+ +    +   A  L   M + 
Sbjct: 128 LLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADD 187

Query: 356 --SGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
              G  PD  + T +I  + K   +  A   +  M +     D + YN+++        +
Sbjct: 188 RGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAM 247

Query: 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTC 473
           ++A  +   M + +   PD  +Y ++L+ Y S G    AI   ++M   GV  +V+  + 
Sbjct: 248 DKAMEVLNTM-VKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSL 306

Query: 474 LIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
           L+  L K  R  +  ++F     RG+KP+    G LL
Sbjct: 307 LMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLL 343


>gi|41152688|dbj|BAD08213.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 762

 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 144/292 (49%), Gaps = 1/292 (0%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
           +EM+   I  D +TYS+II    +    D+A+E    M K G+MP+ +TY++IL  Y  S
Sbjct: 220 HEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSS 279

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
            + +E +   ++  + G +PD + ++ L     ++G     R +   M   G++P++  Y
Sbjct: 280 EQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATY 339

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
            TLL+     G      +L D MV +G+ PD      LI  Y K     +A+ ++ +MR+
Sbjct: 340 CTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQ 399

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
           +    + + Y  ++ +    G V++A   FE M + +   P+   YT++++        D
Sbjct: 400 HGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQM-IDEGLTPNIIVYTSLIHSLCIFDKWD 458

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            A EL  EM + G+ +N +    +I    K  R+ +  ++F + +  GVKP+
Sbjct: 459 KAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPN 510



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 139/280 (49%), Gaps = 3/280 (1%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D ++Y+T+I    +    D+A   +  M    + PD VTYS+I+    K   +++ + + 
Sbjct: 195 DVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVL 254

Query: 281 ERGVASGWKPDPIAF-SVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
              V +G  P+ + + S+L          + I + L++M+S GV+P++V YN+L++ + K
Sbjct: 255 TTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGF-LKKMRSDGVEPDVVTYNSLMDYLCK 313

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
            G+   AR +FD M + GL PD  T   L++ Y       +   L + M  N    D  +
Sbjct: 314 NGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHV 373

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           +N L+   A    V+EA  +F  M+      P+  +Y A++ I    G+VD+A+  FE+M
Sbjct: 374 FNILICAYAKQEKVDEAMLVFSKMRQHGL-NPNVVTYGAVIGILCKSGSVDDAMLYFEQM 432

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGV 499
            + G+  N++  T LI  L    + D    +    +DRG+
Sbjct: 433 IDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGI 472



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 137/286 (47%), Gaps = 1/286 (0%)

Query: 206 IEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
           +  L + MV N I  D+  ++ +I    +    DEA+  F +M + GL P+ VTY A++ 
Sbjct: 355 MHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIG 414

Query: 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325
           +  KSG V++ +  +E+ +  G  P+ I ++ L         +D    ++ EM   G+  
Sbjct: 415 ILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICL 474

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
           N + +N+++ +  K G+   +  LFD MV  G+ P+  T + LI  Y  A    +A +L 
Sbjct: 475 NTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLL 534

Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445
             M       D + YNTL+N    +  +++A  LF++M +S    P+  +Y  +L     
Sbjct: 535 SSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEM-VSSGVSPNIITYNIILQGLFH 593

Query: 446 GGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
                 A EL+  +++ G  + +     ++  L K    D+ +R+F
Sbjct: 594 TRRTAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMF 639



 Score = 97.4 bits (241), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 133/262 (50%), Gaps = 5/262 (1%)

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
           EQ+ +E ++  I    I Y+++I      + +D+A E    M   G+  + + +++I+  
Sbjct: 430 EQMIDEGLTPNI----IVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHS 485

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
           + K G+V E   L++  V  G KP+ I +S L   +  +G  D    +L  M S+G++P+
Sbjct: 486 HCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPD 545

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
            V YNTL+    +  +   A +LF EMV SG++P+  T   +++     R    A EL+ 
Sbjct: 546 CVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYV 605

Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
            + ++   ++   YN +L+      L +EA R+F+++ L+D  + +  ++  M+      
Sbjct: 606 GITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDL-QLETRTFNIMIGALLKV 664

Query: 447 GNVDNAIELFEEMSELGVAINV 468
           G  D A +LF  +S  G+  +V
Sbjct: 665 GRNDEAKDLFAALSANGLVPDV 686



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/270 (23%), Positives = 128/270 (47%), Gaps = 2/270 (0%)

Query: 170 SYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTII 229
           +  +F  +  + L P   I Y   + SL    ++   E+L  EM+   I L+ I +++II
Sbjct: 425 AMLYFEQMIDEGLTP-NIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSII 483

Query: 230 TCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWK 289
               +     E+ + F+ M + G+ P+ +TYS ++D Y  +GK++E   L     + G K
Sbjct: 484 HSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMK 543

Query: 290 PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSL 349
           PD + ++ L   +      D    + +EM S GV PN++ YN +L+ +    +   A+ L
Sbjct: 544 PDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKEL 603

Query: 350 FDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCAD 409
           +  + +SG   +  T   ++    K     +AL +++ +      ++   +N ++     
Sbjct: 604 YVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLK 663

Query: 410 IGLVEEAERLFEDMKLSDYCKPDNYSYTAM 439
           +G  +EA+ LF  +  ++   PD  +Y+ M
Sbjct: 664 VGRNDEAKDLFAALS-ANGLVPDVRTYSLM 692



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 129/297 (43%), Gaps = 41/297 (13%)

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY-----ERGVASGWKPDPIAFSVLG 299
             RM +   MPD  + + +L       + +E L L      +RG   G  PD ++++ + 
Sbjct: 146 LRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRG--GGSAPDVVSYTTVI 203

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
             F + GD D       EM    + P++V Y++++ A+ K      A  +   MV++G+ 
Sbjct: 204 NGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVM 263

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
           P+  T  +++  Y  +   K+A+   ++MR +    D + YN+L++     G   EA ++
Sbjct: 264 PNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKI 323

Query: 420 FEDM-------KLSDYC---------------------------KPDNYSYTAMLNIYGS 445
           F+ M        ++ YC                            PD++ +  ++  Y  
Sbjct: 324 FDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAK 383

Query: 446 GGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
              VD A+ +F +M + G+  NV+    +I  L K+  +DD +  F   ID G+ P+
Sbjct: 384 QEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPN 440



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 77/183 (42%), Gaps = 3/183 (1%)

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382
           V P +  Y  L+    +AG+  L  +    +V+ G   +  T T L+K     +   DA+
Sbjct: 83  VTPTVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAM 142

Query: 383 EL-WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK--LSDYCKPDNYSYTAM 439
           ++   RM E     D      LL    D    +EA  L   M         PD  SYT +
Sbjct: 143 DIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTV 202

Query: 440 LNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGV 499
           +N +   G+ D A   + EM +  ++ +V+  + +I  L K + +D  + V    +  GV
Sbjct: 203 INGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGV 262

Query: 500 KPD 502
            P+
Sbjct: 263 MPN 265



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 84/183 (45%), Gaps = 4/183 (2%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F  + S  + P   I YN+ ++ L   R+    ++L   +  +  +L+  TY+ I+   
Sbjct: 568 LFKEMVSSGVSP-NIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGL 626

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            + NL DEA+  F+ +  T L  +  T++ ++    K G+ +E   L+    A+G  PD 
Sbjct: 627 CKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDV 686

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM---GKAGKPGLARSL 349
             +S++ +   E G  + +  +   M+  G   N  + N+++  +   G   + G   S+
Sbjct: 687 RTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYLSM 746

Query: 350 FDE 352
            DE
Sbjct: 747 IDE 749


>gi|115473997|ref|NP_001060597.1| Os07g0671200 [Oryza sativa Japonica Group]
 gi|22831126|dbj|BAC15987.1| putative crp1(chloroplast RNA processing 1) protein [Oryza sativa
           Japonica Group]
 gi|113612133|dbj|BAF22511.1| Os07g0671200 [Oryza sativa Japonica Group]
          Length = 551

 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 87/322 (27%), Positives = 149/322 (46%), Gaps = 1/322 (0%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           Y + +  L   R    +E +  EM S  +  D   YS++I    R      A E F+   
Sbjct: 216 YTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNVRRASEVFDECV 275

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
             G+ P+E TY A+++ + K G++E    L       G   + I F+ +   +      D
Sbjct: 276 GNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMIDGYCRKNMVD 335

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               +   M+ +G++ ++  YNTL   + +A +   A++L   M+E G+ P+  + T LI
Sbjct: 336 KALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMIEKGVRPNHVSYTTLI 395

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
            I+       +A  L+  M  N      + YN +++     G + EAER   +M+     
Sbjct: 396 SIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERFKNEMEKKGLV 455

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
            PD YSY A+++ +   G VD A+ LFEEM + G   N++  T LI  L K  R ++  +
Sbjct: 456 -PDIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLVAYTALISGLAKEGRSEEAFQ 514

Query: 490 VFGVSIDRGVKPDDRLCGCLLS 511
           ++   +  G+ PDD L   L+ 
Sbjct: 515 LYDNMLGDGLTPDDALYSALVG 536



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 125/261 (47%), Gaps = 4/261 (1%)

Query: 255 PDEVT---YSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGI 311
           PD VT    S ++D Y KSG+V     L +     G K + + ++ L   +    D D +
Sbjct: 138 PDSVTPLSASVVVDGYCKSGRVAHARQLLDEMPRHGVKVNALCYNSLLDAYTREKDDDRV 197

Query: 312 RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371
             +L+ M++ G++P +  Y  L++ +  A       ++F+EM    L+ D    +++I  
Sbjct: 198 AEMLKVMENEGIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINA 257

Query: 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
           Y +A   + A E+++    N    +   Y  L+N    IG +E AE L  DM++      
Sbjct: 258 YCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRG-VGI 316

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           +   +  M++ Y     VD A+E+   M ++G+ ++V     L   L +A R+D+   + 
Sbjct: 317 NQIVFNTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLL 376

Query: 492 GVSIDRGVKPDDRLCGCLLSV 512
            + I++GV+P+      L+S+
Sbjct: 377 RIMIEKGVRPNHVSYTTLISI 397


>gi|242084770|ref|XP_002442810.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
 gi|241943503|gb|EES16648.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
          Length = 722

 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 93/326 (28%), Positives = 150/326 (46%), Gaps = 2/326 (0%)

Query: 177 IKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCN 236
           ++++ + P   + YN  +  L    Q +  +    EM +  ++ D ITY++++    +  
Sbjct: 334 MENEGIMPT-VVTYNAMIHGLLQSGQVEAAQVKFVEMRAMGLQPDVITYNSLLNGYCKAG 392

Query: 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS 296
              EA+  F  +   GL P  +TY+ ++D Y + G +EE   L E  V  G  PD   ++
Sbjct: 393 SLKEALLLFGDLRHAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVCTYT 452

Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356
           +L K    +      R    EM S G+QP+   YNT + A    G    A  L + M+  
Sbjct: 453 ILMKGSHNACSLAMAREFFDEMLSKGLQPDCFAYNTRIRAELTLGAIAKAFRLREVMMLE 512

Query: 357 GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEA 416
           G++ D  T   LI    K     DA +L  +M  N    D I Y  L++   + GL+ EA
Sbjct: 513 GISSDTVTYNILIDGLCKTGNLNDAKDLQMKMVHNGLQPDCITYTCLIHAHCERGLLREA 572

Query: 417 ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
            + F+DM +SD   P   +YT  ++ Y   GN+ +A   F +M E GV  N +    LI 
Sbjct: 573 RKFFKDM-ISDGLAPSAVTYTVFIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIH 631

Query: 477 CLGKARRIDDLVRVFGVSIDRGVKPD 502
            L +  R     R F   ++RG+ P+
Sbjct: 632 ALCRTGRTQLAYRHFHEMLERGLVPN 657



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 119/240 (49%), Gaps = 17/240 (7%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKS-LRFG---RQFQLIEQLANEMVSNEIELDNITYSTI 228
           FF+ + S+ L P +   YN  +++ L  G   + F+L E +  E +S+    D +TY+ +
Sbjct: 470 FFDEMLSKGLQP-DCFAYNTRIRAELTLGAIAKAFRLREVMMLEGISS----DTVTYNIL 524

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
           I    +    ++A +   +M   GL PD +TY+ ++  + + G + E    ++  ++ G 
Sbjct: 525 IDGLCKTGNLNDAKDLQMKMVHNGLQPDCITYTCLIHAHCERGLLREARKFFKDMISDGL 584

Query: 289 KPDPIAFSVLGKMFGESGD----YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344
            P  + ++V    +   G+    Y   R +L+E    GV+PN + YN L+ A+ + G+  
Sbjct: 585 APSAVTYTVFIHAYCRRGNLYSAYGWFRKMLEE----GVEPNEITYNVLIHALCRTGRTQ 640

Query: 345 LARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
           LA   F EM+E GL P++ T T LI    K    +DA+  +  M +N    D++ +  L 
Sbjct: 641 LAYRHFHEMLERGLVPNKYTYTLLIDGNCKEGNWEDAMRFYFEMHQNGIHPDYLTHKALF 700



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 143/317 (45%), Gaps = 8/317 (2%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSN---EIELDNITYSTIITCAKRCNLFDEAIEW 244
           + +NV +  L   R+  L E  A EMV       +  + TY+ +IT         +A + 
Sbjct: 275 VTHNVVITGL--ARKGDLEE--AAEMVEGMRLSKKASSFTYNPLITGLLAKGFVKKADDL 330

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
              M   G+MP  VTY+A++    +SG+VE     +    A G +PD I ++ L   + +
Sbjct: 331 QLEMENEGIMPTVVTYNAMIHGLLQSGQVEAAQVKFVEMRAMGLQPDVITYNSLLNGYCK 390

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
           +G       +  +++  G+ P ++ YN L++   + G    AR L +EMVE G  PD  T
Sbjct: 391 AGSLKEALLLFGDLRHAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVCT 450

Query: 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
            T L+K    A     A E ++ M       D   YNT +     +G + +A RL E M 
Sbjct: 451 YTILMKGSHNACSLAMAREFFDEMLSKGLQPDCFAYNTRIRAELTLGAIAKAFRLREVMM 510

Query: 425 LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484
           L      D  +Y  +++     GN+++A +L  +M   G+  + +  TCLI    +   +
Sbjct: 511 LEGI-SSDTVTYNILIDGLCKTGNLNDAKDLQMKMVHNGLQPDCITYTCLIHAHCERGLL 569

Query: 485 DDLVRVFGVSIDRGVKP 501
            +  + F   I  G+ P
Sbjct: 570 REARKFFKDMISDGLAP 586



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 72/298 (24%), Positives = 130/298 (43%), Gaps = 4/298 (1%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYS 226
           +++   F  ++   L P   + YN+ +    R G   +   +L  EMV      D  TY+
Sbjct: 395 KEALLLFGDLRHAGLAPT-VLTYNILIDGYCRLG-DLEEARRLKEEMVEQGCLPDVCTYT 452

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
            ++  +        A E+F+ M   GL PD   Y+  +      G + +   L E  +  
Sbjct: 453 ILMKGSHNACSLAMAREFFDEMLSKGLQPDCFAYNTRIRAELTLGAIAKAFRLREVMMLE 512

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G   D + +++L     ++G+ +  + +  +M   G+QP+ + Y  L+ A  + G    A
Sbjct: 513 GISSDTVTYNILIDGLCKTGNLNDAKDLQMKMVHNGLQPDCITYTCLIHAHCERGLLREA 572

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
           R  F +M+  GL P   T T  I  Y +      A   + +M E     + I YN L++ 
Sbjct: 573 RKFFKDMISDGLAPSAVTYTVFIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHA 632

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
               G  + A R F +M L     P+ Y+YT +++     GN ++A+  + EM + G+
Sbjct: 633 LCRTGRTQLAYRHFHEM-LERGLVPNKYTYTLLIDGNCKEGNWEDAMRFYFEMHQNGI 689



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 147/330 (44%), Gaps = 47/330 (14%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
           +EM S+ +  D    + ++        +D+       M + G+ P  VTY+ +LD + K 
Sbjct: 191 HEMASHGVAPDVKDCNRVLRVLSDAARWDDICAVHAEMLQLGIEPSIVTYNTLLDSFLKE 250

Query: 271 GKVEEVLSLYE----RGVASGWKPDPIAFSVLGKMFGESGD-------YDGIRYV----- 314
           G+ ++V  L +    RG  SG  P+ +  +V+       GD        +G+R       
Sbjct: 251 GRNDKVAMLLKEMETRG--SGCLPNDVTHNVVITGLARKGDLEEAAEMVEGMRLSKKASS 308

Query: 315 ---------------------LQ-EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
                                LQ EM++ G+ P +V YN ++  + ++G+   A+  F E
Sbjct: 309 FTYNPLITGLLAKGFVKKADDLQLEMENEGIMPTVVTYNAMIHGLLQSGQVEAAQVKFVE 368

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M   GL PD  T  +L+  Y KA   K+AL L+  +R        + YN L++    +G 
Sbjct: 369 MRAMGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLRHAGLAPTVLTYNILIDGYCRLGD 428

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
           +EEA RL E+M +   C PD  +YT ++    +  ++  A E F+EM   G+  +     
Sbjct: 429 LEEARRLKEEM-VEQGCLPDVCTYTILMKGSHNACSLAMAREFFDEMLSKGLQPDCFAYN 487

Query: 473 CLIQ------CLGKARRIDDLVRVFGVSID 496
             I+       + KA R+ +++ + G+S D
Sbjct: 488 TRIRAELTLGAIAKAFRLREVMMLEGISSD 517



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 116/268 (43%), Gaps = 2/268 (0%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           Y + MK         +  +  +EM+S  ++ D   Y+T I          +A    E M 
Sbjct: 451 YTILMKGSHNACSLAMAREFFDEMLSKGLQPDCFAYNTRIRAELTLGAIAKAFRLREVMM 510

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
             G+  D VTY+ ++D   K+G + +   L  + V +G +PD I ++ L     E G   
Sbjct: 511 LEGISSDTVTYNILIDGLCKTGNLNDAKDLQMKMVHNGLQPDCITYTCLIHAHCERGLLR 570

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
             R   ++M S G+ P+ V Y   + A  + G    A   F +M+E G+ P+E T   LI
Sbjct: 571 EARKFFKDMISDGLAPSAVTYTVFIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLI 630

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
               +    + A   +  M E     +   Y  L++     G  E+A R + +M   +  
Sbjct: 631 HALCRTGRTQLAYRHFHEMLERGLVPNKYTYTLLIDGNCKEGNWEDAMRFYFEMH-QNGI 689

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFE 457
            PD  ++ A+   +   G++++AIE  E
Sbjct: 690 HPDYLTHKALFKGFDE-GHMNHAIEYLE 716



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 109/227 (48%), Gaps = 4/227 (1%)

Query: 277 LSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA 336
           LS +    + G  PD    + + ++  ++  +D I  V  EM  LG++P++V YNTLL++
Sbjct: 187 LSAFHEMASHGVAPDVKDCNRVLRVLSDAARWDDICAVHAEMLQLGIEPSIVTYNTLLDS 246

Query: 337 MGKAGKPGLARSLFDEMVE--SGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWP 394
             K G+      L  EM    SG  P++ T   +I    +    ++A E+ E MR +K  
Sbjct: 247 FLKEGRNDKVAMLLKEMETRGSGCLPNDVTHNVVITGLARKGDLEEAAEMVEGMRLSKKA 306

Query: 395 MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIE 454
             F  YN L+      G V++A+ L  +M+ ++   P   +Y AM++     G V+ A  
Sbjct: 307 SSFT-YNPLITGLLAKGFVKKADDLQLEME-NEGIMPTVVTYNAMIHGLLQSGQVEAAQV 364

Query: 455 LFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
            F EM  +G+  +V+    L+    KA  + + + +FG     G+ P
Sbjct: 365 KFVEMRAMGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLRHAGLAP 411



 Score = 40.4 bits (93), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 3/117 (2%)

Query: 345 LARSLFDEMVESGLTPDEKTLTALIKIYG-KARWAKDALELWERMRENKWPMDFILYNTL 403
           L  S F EM   G+ PD K    ++++    ARW  D   +   M +       + YNTL
Sbjct: 185 LCLSAFHEMASHGVAPDVKDCNRVLRVLSDAARW-DDICAVHAEMLQLGIEPSIVTYNTL 243

Query: 404 LNMCADIGLVEEAERLFEDMKL-SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           L+     G  ++   L ++M+     C P++ ++  ++      G+++ A E+ E M
Sbjct: 244 LDSFLKEGRNDKVAMLLKEMETRGSGCLPNDVTHNVVITGLARKGDLEEAAEMVEGM 300


>gi|47550658|dbj|BAD20284.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 791

 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 144/292 (49%), Gaps = 1/292 (0%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
           +EM+   I  D +TYS+II    +    D+A+E    M K G+MP+ +TY++IL  Y  S
Sbjct: 220 HEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSS 279

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
            + +E +   ++  + G +PD + ++ L     ++G     R +   M   G++P++  Y
Sbjct: 280 EQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATY 339

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
            TLL+     G      +L D MV +G+ PD      LI  Y K     +A+ ++ +MR+
Sbjct: 340 CTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQ 399

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
           +    + + Y  ++ +    G V++A   FE M + +   P+   YT++++        D
Sbjct: 400 HGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQM-IDEGLTPNIIVYTSLIHSLCIFDKWD 458

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            A EL  EM + G+ +N +    +I    K  R+ +  ++F + +  GVKP+
Sbjct: 459 KAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPN 510



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 139/280 (49%), Gaps = 3/280 (1%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D ++Y+T+I    +    D+A   +  M    + PD VTYS+I+    K   +++ + + 
Sbjct: 195 DVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVL 254

Query: 281 ERGVASGWKPDPIAF-SVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
              V +G  P+ + + S+L          + I + L++M+S GV+P++V YN+L++ + K
Sbjct: 255 TTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGF-LKKMRSDGVEPDVVTYNSLMDYLCK 313

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
            G+   AR +FD M + GL PD  T   L++ Y       +   L + M  N    D  +
Sbjct: 314 NGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHV 373

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           +N L+   A    V+EA  +F  M+      P+  +Y A++ I    G+VD+A+  FE+M
Sbjct: 374 FNILICAYAKQEKVDEAMLVFSKMRQHGL-NPNVVTYGAVIGILCKSGSVDDAMLYFEQM 432

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGV 499
            + G+  N++  T LI  L    + D    +    +DRG+
Sbjct: 433 IDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGI 472



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 137/286 (47%), Gaps = 1/286 (0%)

Query: 206 IEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
           +  L + MV N I  D+  ++ +I    +    DEA+  F +M + GL P+ VTY A++ 
Sbjct: 355 MHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIG 414

Query: 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325
           +  KSG V++ +  +E+ +  G  P+ I ++ L         +D    ++ EM   G+  
Sbjct: 415 ILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICL 474

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
           N + +N+++ +  K G+   +  LFD MV  G+ P+  T + LI  Y  A    +A +L 
Sbjct: 475 NTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLL 534

Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445
             M       D + YNTL+N    +  +++A  LF++M +S    P+  +Y  +L     
Sbjct: 535 SSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEM-VSSGVSPNIITYNIILQGLFH 593

Query: 446 GGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
                 A EL+  +++ G  + +     ++  L K    D+ +R+F
Sbjct: 594 TRRTAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMF 639



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 142/304 (46%), Gaps = 11/304 (3%)

Query: 170 SYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTII 229
           +  +F  +  + L P   I Y   + SL    ++   E+L  EM+   I L+ I +++II
Sbjct: 425 AMLYFEQMIDEGLTP-NIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSII 483

Query: 230 TCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWK 289
               +     E+ + F+ M + G+ P+ +TYS ++D Y  +GK++E   L     + G K
Sbjct: 484 HSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMK 543

Query: 290 PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSL 349
           PD + ++ L   +      D    + +EM S GV PN++ YN +L+ +    +   A+ L
Sbjct: 544 PDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKEL 603

Query: 350 FDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCAD 409
           +  + +SG   +  T   ++    K     +AL +++ +      ++   +N ++     
Sbjct: 604 YVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLK 663

Query: 410 IGLVEEAERLFEDMKLSDYCKPDNYSYTAML-NIYGSGGNVDNAIELFEEMSELGVAINV 468
           +G  +EA+ LF     S+   P+ ++Y  M  NI G G        L EE+ +L  ++  
Sbjct: 664 VGRNDEAKDLFVAFS-SNGLVPNYWTYRLMAENIIGQG--------LLEELDQLFFSMED 714

Query: 469 MGCT 472
            GCT
Sbjct: 715 NGCT 718



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 129/297 (43%), Gaps = 41/297 (13%)

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY-----ERGVASGWKPDPIAFSVLG 299
             RM +   MPD  + + +L       + +E L L      +RG   G  PD ++++ + 
Sbjct: 146 LRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRG--GGSAPDVVSYTTVI 203

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
             F + GD D       EM    + P++V Y++++ A+ K      A  +   MV++G+ 
Sbjct: 204 NGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVM 263

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
           P+  T  +++  Y  +   K+A+   ++MR +    D + YN+L++     G   EA ++
Sbjct: 264 PNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKI 323

Query: 420 FEDM-------KLSDYC---------------------------KPDNYSYTAMLNIYGS 445
           F+ M        ++ YC                            PD++ +  ++  Y  
Sbjct: 324 FDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAK 383

Query: 446 GGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
              VD A+ +F +M + G+  NV+    +I  L K+  +DD +  F   ID G+ P+
Sbjct: 384 QEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPN 440



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 77/183 (42%), Gaps = 3/183 (1%)

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382
           V P +  Y  L+    +AG+  L  +    +V+ G   +  T T L+K     +   DA+
Sbjct: 83  VTPTVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAM 142

Query: 383 EL-WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK--LSDYCKPDNYSYTAM 439
           ++   RM E     D      LL    D    +EA  L   M         PD  SYT +
Sbjct: 143 DIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTV 202

Query: 440 LNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGV 499
           +N +   G+ D A   + EM +  ++ +V+  + +I  L K + +D  + V    +  GV
Sbjct: 203 INGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGV 262

Query: 500 KPD 502
            P+
Sbjct: 263 MPN 265



 Score = 40.0 bits (92), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 48/237 (20%), Positives = 93/237 (39%), Gaps = 43/237 (18%)

Query: 177 IKSQNLFPM--------ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           I+S+ LF +          I Y+  +       +     +L + M S  ++ D +TY+T+
Sbjct: 493 IESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTL 552

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAIL-------------DVYA---KSGK 272
           I    R +  D+A+  F+ M  +G+ P+ +TY+ IL             ++Y    KSG 
Sbjct: 553 INGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGT 612

Query: 273 -------------------VEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRY 313
                               +E L +++    +  + +   F+++     + G  D  + 
Sbjct: 613 QLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKD 672

Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK 370
           +     S G+ PN   Y  + E +   G       LF  M ++G T D   L  +++
Sbjct: 673 LFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFFSMEDNGCTVDSGMLNFIVR 729



 Score = 39.7 bits (91), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 37/183 (20%), Positives = 82/183 (44%), Gaps = 4/183 (2%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F  + S  + P   I YN+ ++ L   R+    ++L   +  +  +L+  TY+ I+   
Sbjct: 568 LFKEMVSSGVSP-NIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGL 626

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            + NL DEA+  F+ +  T L  +  T++ ++    K G+ +E   L+    ++G  P+ 
Sbjct: 627 CKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFVAFSSNGLVPNY 686

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM---GKAGKPGLARSL 349
             + ++ +     G  + +  +   M+  G   +  + N ++  +   G+  + G   S+
Sbjct: 687 WTYRLMAENIIGQGLLEELDQLFFSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSM 746

Query: 350 FDE 352
            DE
Sbjct: 747 IDE 749


>gi|125600186|gb|EAZ39762.1| hypothetical protein OsJ_24200 [Oryza sativa Japonica Group]
          Length = 875

 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 83/343 (24%), Positives = 174/343 (50%), Gaps = 13/343 (3%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           + Y+ ++        +D      E M ++G+ PDE T+++++ ++A  G  +    L  +
Sbjct: 334 VEYNVMVKAYGAAKRYDRVSPLLEHMNESGISPDECTFNSLVQMFATGGYPQRAKKLLGK 393

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
              +G+KP    ++        +       Y+  EMK+ GV+PN+VVY  L++   + G+
Sbjct: 394 MKYAGFKPKCETYAAAITTLSRNYLVSEAIYLYNEMKASGVEPNVVVYGVLIDTFAETGQ 453

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
              A    + M ESG+ P++  LT+LIK Y KA   K+A +L+ RM+      D +  N+
Sbjct: 454 LEEALHYNNLMEESGIAPNQIVLTSLIKAYSKANCWKEAQDLYSRMKSMDGGPDIVASNS 513

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
           +LN+ A++G+V + + +F+ ++ ++  + D+ SYT+M+++Y + G ++ ++ +  ++   
Sbjct: 514 MLNLYANLGMVTKVKEIFDCLRRNN--QADDVSYTSMISLYKNMGLLNESVRVAHDLQNS 571

Query: 463 GVAINVMGCTCLIQCL---GKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETS 519
           G+  +      ++ C    GK R   +LV+      +  + PD    G + S++   + +
Sbjct: 572 GLLSDCASYNAVMACFVAKGKLRECAELVQQMQ---EGNILPDASTFGMIFSIMKKIQIA 628

Query: 520 -EDVGKVITCLQ----QANPKLVAFLNLIEDNSTGFENIKEEF 557
            E+V ++ +        ++  ++AFL LI        NI E++
Sbjct: 629 PEEVSQLQSAYNDNRSSSSQAVIAFLFLIAGMHAAALNICEKY 671



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 77/372 (20%), Positives = 153/372 (41%), Gaps = 19/372 (5%)

Query: 142 LRAITEIPHQPTRENALLILNSL-KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFG 200
           +RA    P + +    + IL  + ++   +  F NW   +     E  F ++   +L  G
Sbjct: 37  MRARGVAPDEVSMSTFVRILKDVGRYSDAATLFDNWCNGR----FEVGFIDLDYSALDSG 92

Query: 201 RQFQ-LIEQLANEMVSN----------EIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
              Q L+E++ +  V +           I    +TY+T+I    +     +A++ F  M 
Sbjct: 93  GPMQFLLEEMCHGNVDDAGASGIQGVARIPKLAVTYNTMIDLYGKAGKLKDAMDMFMGMP 152

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
             G+  D  T++ +++++   G V+E  +L+   +  G  PD   F+V+  +F   GD +
Sbjct: 153 DYGVAADTCTFNTLINIFGSCGNVKEAEALFASMIVRGTNPDVKTFNVMMTLFASKGDVE 212

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
           G+      +  +G+  + V Y  +L  + +      A  +   ++ SG    E++L  ++
Sbjct: 213 GVLKHYYHIGKMGLSADTVSYGIVLRVLCERKMVHEAEDVIVGIMRSGTCVPEQSLPVVM 272

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
           K+Y        A   ++R       +    +  +++  A+ GL EEAE +F   +     
Sbjct: 273 KMYIDQGLLDKANAFFDRHCRGD-EVSSKTFAAIMDAFAERGLWEEAEHVFYSHR--GVR 329

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
           +     Y  M+  YG+    D    L E M+E G++ +      L+Q            +
Sbjct: 330 RRGIVEYNVMVKAYGAAKRYDRVSPLLEHMNESGISPDECTFNSLVQMFATGGYPQRAKK 389

Query: 490 VFGVSIDRGVKP 501
           + G     G KP
Sbjct: 390 LLGKMKYAGFKP 401



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 59/304 (19%), Positives = 124/304 (40%), Gaps = 33/304 (10%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L NEM ++ +E + + Y  +I         +EA+ +   M ++G+ P+++  ++++  Y+
Sbjct: 425 LYNEMKASGVEPNVVVYGVLIDTFAETGQLEEALHYNNLMEESGIAPNQIVLTSLIKAYS 484

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           K+   +E   LY R  +    PD +A + +  ++   G    ++ +   ++    Q + V
Sbjct: 485 KANCWKEAQDLYSRMKSMDGGPDIVASNSMLNLYANLGMVTKVKEIFDCLRR-NNQADDV 543

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            Y +++      G    +  +  ++  SGL  D  +  A++  +      ++  EL ++M
Sbjct: 544 SYTSMISLYKNMGLLNESVRVAHDLQNSGLLSDCASYNAVMACFVAKGKLRECAELVQQM 603

Query: 389 RENKWPMDFILYNTLLNMCADIGL----VEEAERLFEDMKLSD----------------- 427
           +E     D   +  + ++   I +    V + +  + D + S                  
Sbjct: 604 QEGNILPDASTFGMIFSIMKKIQIAPEEVSQLQSAYNDNRSSSSQAVIAFLFLIAGMHAA 663

Query: 428 -------YCKP----DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
                  Y KP    D  +      +Y S G VD A  LF +M ELG+  +      L  
Sbjct: 664 ALNICEKYMKPVLTIDQCACNVAFKVYASCGEVDKAFSLFMQMHELGLKPDTATYIHLTT 723

Query: 477 CLGK 480
           C G+
Sbjct: 724 CYGE 727



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 43/203 (21%), Positives = 84/203 (41%), Gaps = 31/203 (15%)

Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYG 373
           +L+ M++ GV P+ V  +T +  +   G+   A +LFD                    + 
Sbjct: 33  LLRHMRARGVAPDEVSMSTFVRILKDVGRYSDAATLFDN-------------------WC 73

Query: 374 KARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL--VEEAERLFEDMKLSDYCKP 431
             R+    ++L     ++  PM F+L         D G   ++   R+    KL+     
Sbjct: 74  NGRFEVGFIDLDYSALDSGGPMQFLLEEMCHGNVDDAGASGIQGVARI---PKLA----- 125

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
              +Y  M+++YG  G + +A+++F  M + GVA +      LI   G    + +   +F
Sbjct: 126 --VTYNTMIDLYGKAGKLKDAMDMFMGMPDYGVAADTCTFNTLINIFGSCGNVKEAEALF 183

Query: 492 GVSIDRGVKPDDRLCGCLLSVVS 514
              I RG  PD +    ++++ +
Sbjct: 184 ASMIVRGTNPDVKTFNVMMTLFA 206



 Score = 41.6 bits (96), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 76/204 (37%), Gaps = 18/204 (8%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN  M       + +   +L  +M    I  D  T+  I +  K+  +  E +   +  Y
Sbjct: 580 YNAVMACFVAKGKLRECAELVQQMQEGNILPDASTFGMIFSIMKKIQIAPEEVSQLQSAY 639

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
                       A L + A  G     L++ E+ +      D  A +V  K++   G+ D
Sbjct: 640 NDNRSSSSQAVIAFLFLIA--GMHAAALNICEKYMKPVLTIDQCACNVAFKVYASCGEVD 697

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG--------LARSLFDEM-VESGLTP 360
               +  +M  LG++P+   Y  L    G+ G PG        L   L +EM ++   +P
Sbjct: 698 KAFSLFMQMHELGLKPDTATYIHLTTCYGEYGMPGGKMKAIFLLISQLRNEMLIQFTQSP 757

Query: 361 DEKT-------LTALIKIYGKARW 377
           D  T       L A  K+   A W
Sbjct: 758 DMLTRNSECPWLHAKCKVLTAASW 781


>gi|242067353|ref|XP_002448953.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
 gi|241934796|gb|EES07941.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
          Length = 734

 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 83/321 (25%), Positives = 154/321 (47%), Gaps = 10/321 (3%)

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           P   + Y   +  L   + F   E +  +M+ N ++ +N TY+ +I        + E ++
Sbjct: 204 PPNVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGVKPNNDTYNCLIHGYLSIGKWKEVVQ 263

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
             E+M   GL PD  TY ++L+      ++   L L    V +G  PD   F++    + 
Sbjct: 264 MLEKMSARGLKPDCYTYGSLLNYLCALSEMHSFLDLM---VENGLSPDHHIFNIFFSAYA 320

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
           + G  D    +  +M+  G+ PN+V Y  L++A+ K G+   A   F++M+  G+TP+  
Sbjct: 321 KCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIV 380

Query: 364 TLTALIKIYGKA---RWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLF 420
              +L  +YG     +W +    ++E + +   P + + +NTL+    ++G V E  RL 
Sbjct: 381 VFNSL--VYGLCTVDKWERAEELVYEMLDQGICP-NAVFFNTLICNLCNVGRVMEGRRLI 437

Query: 421 EDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK 480
           + M+     +PD +SYT +++ Y   G  D A ++F+ M  +G++   +    L+     
Sbjct: 438 DLMEHVGV-RPDAFSYTPLISGYCLAGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCS 496

Query: 481 ARRIDDLVRVFGVSIDRGVKP 501
           A RIDD   +F   + +GV P
Sbjct: 497 ASRIDDAYCLFREMLRKGVTP 517



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 83/307 (27%), Positives = 145/307 (47%), Gaps = 15/307 (4%)

Query: 205 LIEQLANEMV---SNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS 261
           L+  L N MV   S ++  +  TYS +I C  R      +   F  + KTG   +++  +
Sbjct: 78  LVVSLFNRMVRECSIKVAPNTCTYSILIGCLCRMGRLKHSFATFGLILKTGWRVNDIVIN 137

Query: 262 AILDVYAKSGKVEEVLS-LYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEM-- 318
            +L       +V E +  L +R    G  PD +++S+L K F      +    +L+ M  
Sbjct: 138 QLLKGLCDGKRVGEAMDVLLQRMPELGCTPDTVSYSILLKGFCNENRAEEALELLRMMAN 197

Query: 319 -KSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIY-GKAR 376
                  PN+V Y T+++ + KA     A  +F +M+++G+ P+  T   LI  Y    +
Sbjct: 198 DHGRSCPPNVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGVKPNNDTYNCLIHGYLSIGK 257

Query: 377 WAKDALELWERMRENKWPMDFILYNTLLN-MCADIGLVEEAERLFEDMKLSDYCKPDNYS 435
           W K+ +++ E+M       D   Y +LLN +CA    + E    F D+ + +   PD++ 
Sbjct: 258 W-KEVVQMLEKMSARGLKPDCYTYGSLLNYLCA----LSEMHS-FLDLMVENGLSPDHHI 311

Query: 436 YTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSI 495
           +    + Y   G +D A+++F +M + G++ NV+    LI  L K  R+DD    F   I
Sbjct: 312 FNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMI 371

Query: 496 DRGVKPD 502
           + GV P+
Sbjct: 372 NEGVTPN 378



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 154/343 (44%), Gaps = 4/343 (1%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYST 227
           K+   FN ++   L P   + Y   + +L + GR     E   N+M++  +  + + +++
Sbjct: 327 KAMDIFNKMRQHGLSP-NVVNYGALIDALCKLGR-VDDAEVKFNQMINEGVTPNIVVFNS 384

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           ++      + ++ A E    M   G+ P+ V ++ ++      G+V E   L +     G
Sbjct: 385 LVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVG 444

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
            +PD  +++ L   +  +G  D    V   M S+G+ P  V YNTLL     A +   A 
Sbjct: 445 VRPDAFSYTPLISGYCLAGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAY 504

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
            LF EM+  G+TP   T   ++    + +   +A EL+  M  +    D   YN +LN  
Sbjct: 505 CLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGL 564

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
                V+EA ++F+ +  S   + +  ++T M+     GG  ++A++LF  +   G+  N
Sbjct: 565 CKSNCVDEAFKMFQSL-CSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPN 623

Query: 468 VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
           V+    + + L +   +++   +F      G  P+ ++   L+
Sbjct: 624 VVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALV 666



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/285 (22%), Positives = 134/285 (47%), Gaps = 7/285 (2%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERM---YKTGLMPDEVTYSAILDVYAKSGKVEEVL 277
           D ++YS ++      N  +EA+E    M   +     P+ VTY+ ++D   K+   +   
Sbjct: 168 DTVSYSILLKGFCNENRAEEALELLRMMANDHGRSCPPNVVTYTTVIDGLCKAQLFDRAE 227

Query: 278 SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
            ++++ + +G KP+   ++ L   +   G +  +  +L++M + G++P+   Y +LL  +
Sbjct: 228 GVFQQMIDNGVKPNNDTYNCLIHGYLSIGKWKEVVQMLEKMSARGLKPDCYTYGSLLNYL 287

Query: 338 GKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDF 397
               +     S  D MVE+GL+PD          Y K      A++++ +MR++    + 
Sbjct: 288 CALSE---MHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNV 344

Query: 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE 457
           + Y  L++    +G V++AE  F  M +++   P+   + +++    +    + A EL  
Sbjct: 345 VNYGALIDALCKLGRVDDAEVKFNQM-INEGVTPNIVVFNSLVYGLCTVDKWERAEELVY 403

Query: 458 EMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           EM + G+  N +    LI  L    R+ +  R+  +    GV+PD
Sbjct: 404 EMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPD 448



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/276 (21%), Positives = 117/276 (42%), Gaps = 7/276 (2%)

Query: 114 TYSYNPRVRDLKLFARKLNDCDNTEEAF--LRAITEIPHQPTRENALLILNSLKFWQKSY 171
            +SY P +    L  R     D  E+ F  + +I   P + T    L    S      +Y
Sbjct: 449 AFSYTPLISGYCLAGRT----DEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAY 504

Query: 172 FFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITC 231
             F  +  + + P   + YN  +  L   ++F   ++L   M+++  + D  TY+ I+  
Sbjct: 505 CLFREMLRKGVTP-GVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNG 563

Query: 232 AKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291
             + N  DEA + F+ +   GL  + +T++ ++    K G+ E+ + L+    A+G  P+
Sbjct: 564 LCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPN 623

Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
            + + ++ +   E G  +    +   M+  G  PN  + N L+  +   G    A +   
Sbjct: 624 VVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLS 683

Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
           ++ E   + +  T + LI I+    +   A  L E+
Sbjct: 684 KLDERNFSVEASTTSLLISIFTSDEYQHHAKSLPEK 719



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/287 (21%), Positives = 109/287 (37%), Gaps = 80/287 (27%)

Query: 241 AIEWFERMYK---TGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
            +  F RM +     + P+  TYS ++    + G+++   + +   + +GW+ + I    
Sbjct: 79  VVSLFNRMVRECSIKVAPNTCTYSILIGCLCRMGRLKHSFATFGLILKTGWRVNDI---- 134

Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS-LFDEMVES 356
                                          V N LL+ +    + G A   L   M E 
Sbjct: 135 -------------------------------VINQLLKGLCDGKRVGEAMDVLLQRMPEL 163

Query: 357 GLTPDEKTLTALIKIYGKARWAKDALELWERMRENK---WPMDFILYNTLLNMCADIGLV 413
           G TPD  + + L+K +     A++ALEL   M  +     P + + Y T+++      L 
Sbjct: 164 GCTPDTVSYSILLKGFCNENRAEEALELLRMMANDHGRSCPPNVVTYTTVIDGLCKAQLF 223

Query: 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTC 473
           + AE +F+ M + +  KP+N +Y  +++ Y S G     +++ E+MS             
Sbjct: 224 DRAEGVFQQM-IDNGVKPNNDTYNCLIHGYLSIGKWKEVVQMLEKMSA------------ 270

Query: 474 LIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSE 520
                                  RG+KPD    G LL+   LC  SE
Sbjct: 271 -----------------------RGLKPDCYTYGSLLNY--LCALSE 292


>gi|255554390|ref|XP_002518234.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542581|gb|EEF44120.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 932

 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 83/319 (26%), Positives = 160/319 (50%), Gaps = 7/319 (2%)

Query: 212 EMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG 271
           EMV   I  D I Y+ +I    +    ++++ +   M   G  P+ VTY+AI+  + + G
Sbjct: 280 EMVKKGISSDTIGYTILIDGFSKEGSVEKSVGFLHHMLANGSEPNLVTYTAIILGFCRKG 339

Query: 272 KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYN 331
           K++E  ++++     G K D   +++L   F   GD+D    +++EM+  G+ P +V YN
Sbjct: 340 KIDEAFAIFKLVENLGIKLDEFIYAILVDGFCLKGDFDRAYQLIEEMEKKGITPTIVAYN 399

Query: 332 TLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN 391
            L+ ++ KAG     R+   + V   L  D+ T +AL+  Y K   +   LE+ +R+ E 
Sbjct: 400 ILINSLCKAG-----RTFDADEVSKALQGDKITYSALLHGYIKEENSIGILEVRQRLEEA 454

Query: 392 KWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDN 451
           +  MD I++N +L     +G  E+   L+  M+  +    ++ +Y  ++  +   G +D 
Sbjct: 455 RIQMDIIMFNIILKALFVVGAFEDVLVLYNGMQEMNLV-ANSITYCTIIGGFCKVGRIDE 513

Query: 452 AIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
           A+E+F+E    G+  +V    C+I  L K   +D    +F   I++G+  D  +C  L+ 
Sbjct: 514 ALEIFDEFRH-GLGSSVACYNCMINGLCKNGMVDMAAEIFVELIEKGLTLDIGICMTLIK 572

Query: 512 VVSLCETSEDVGKVITCLQ 530
            +   ++++ V  +I  +Q
Sbjct: 573 AIVKEKSADGVLDLIYRIQ 591



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 73/346 (21%), Positives = 145/346 (41%), Gaps = 61/346 (17%)

Query: 185 METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEW 244
           M+ I +N+ +K+L     F+ +  L N M    +  ++ITY TII    +    DEA+E 
Sbjct: 458 MDIIMFNIILKALFVVGAFEDVLVLYNGMQEMNLVANSITYCTIIGGFCKVGRIDEALEI 517

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
           F+  ++ GL      Y+ +++   K+G V+    ++   +  G   D      L K   +
Sbjct: 518 FDE-FRHGLGSSVACYNCMINGLCKNGMVDMAAEIFVELIEKGLTLDIGICMTLIKAIVK 576

Query: 305 SGDYDGIRYVLQEMKSLGV-QPNLVVYNTLLEAMGKAGKPGLARSLF------------- 350
               DG+  ++  ++++G  + +  V+N  +  + K      A  ++             
Sbjct: 577 EKSADGVLDLIYRIQNIGSDKYDSTVWNYAMSLLSKRKFSMAASEVYMVARRNKLVLTSK 636

Query: 351 -DEMVESGLTPDEK------TLTALIKIYG--KARWAKDALELWERMRENK----WPMDF 397
              ++  GL  D K       L++ +K YG  + +  K AL  + +M+E+     +P  +
Sbjct: 637 SYYLIIKGLIGDGKFWLTRPILSSFMKEYGLIEPKDVKSALYFFNKMKEDNAFVTFPEGY 696

Query: 398 IL--------------------YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYT 437
           +L                    YN+ +N     G  EEA ++ + ++            T
Sbjct: 697 LLDAKQLFESMVLKGFKWNIRIYNSFINGYCKFGQFEEALKILKIIE------------T 744

Query: 438 AMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL-GKAR 482
             L++    G+++ A+  F E  + G++ + +G   LI+ L GK R
Sbjct: 745 ECLDLDEFSGDMEGALRFFLEYKQKGISPDFLGFLYLIRGLCGKGR 790



 Score = 55.8 bits (133), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 68/319 (21%), Positives = 133/319 (41%), Gaps = 12/319 (3%)

Query: 201 RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTY 260
            +F L+    +++  N+IE +  T+S  +    +   F+EA E F + ++         +
Sbjct: 52  HKFTLVPHFLSQLNQNQIEGNYQTHSLFLLALLKLKNFEEA-EHFIKTHRAKSSSSSKGH 110

Query: 261 SAILDVYAKSGKVEE------VLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYV 314
              LD   ++   +E      +L L++     G  P    F  +   F   G+  G   V
Sbjct: 111 K-FLDSLIQAISTDEKDPNKALLVLHDCLRNYGMLPSSFTFCSVIHSFVLQGNMSGAIQV 169

Query: 315 LQEMKSLGVQPNL--VVYNTLLEAMGKAGKPGLARSLFDEMVESG-LTPDEKTLTALIKI 371
           L+ M    +       V ++++    K GKP LA   F+  ++ G L P+  T TA++  
Sbjct: 170 LELMNDEKINYPFCNFVCSSIVSGFCKMGKPELAMGFFENSLKLGALKPNLVTYTAVVSS 229

Query: 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
                 A +  +L   M E     D + Y+  +      G+  EA R  ++M +      
Sbjct: 230 LCMLGRADEVFDLVCEMEEEGLAFDVVFYSCWICGYFRNGVFIEAIRKHKEM-VKKGISS 288

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           D   YT +++ +   G+V+ ++     M   G   N++  T +I    +  +ID+   +F
Sbjct: 289 DTIGYTILIDGFSKEGSVEKSVGFLHHMLANGSEPNLVTYTAIILGFCRKGKIDEAFAIF 348

Query: 492 GVSIDRGVKPDDRLCGCLL 510
            +  + G+K D+ +   L+
Sbjct: 349 KLVENLGIKLDEFIYAILV 367


>gi|215794293|gb|ACJ70132.1| restorer-of-fertility [Brassica napus]
          Length = 667

 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 92/329 (27%), Positives = 159/329 (48%), Gaps = 14/329 (4%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + ++V + +L    +F   E+L NEM+   I  + ITY+++I    + N  D A   F
Sbjct: 317 DVVTFSVLINALVKEGKFFEAEELYNEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMF 376

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
             M   G  PD +T+S ++D Y  + +V++ + L       G   + I ++ L   F + 
Sbjct: 377 YLMATKGCSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQL 436

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT------ 359
           G+ +    +LQEM S GV PN+V  NTLL+ +   GK   A  +F  M +S +       
Sbjct: 437 GNLNAALDLLQEMISSGVCPNVVTCNTLLDGLCNNGKLKDALEMFKVMQKSKMDLDASHP 496

Query: 360 -----PDEKTLTALI-KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
                PD +T   LI  +  + +++ +A EL+E M       D I YN++++       +
Sbjct: 497 FNDVEPDVQTYNILICGLINEGKFS-EAEELYEEMPHRGLVPDTITYNSVIDGLCKQSRL 555

Query: 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTC 473
           +EA ++F+ M    +  PD  ++T ++N Y   G V + +E+F EM   G+  N +    
Sbjct: 556 DEATQMFDSMGSKGF-SPDVVTFTTLINGYCKVGRVGDGLEVFCEMGRRGIVANAITYRT 614

Query: 474 LIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           LI    +   I+  + +F   I  GV PD
Sbjct: 615 LIHGFCQVGNINGALDIFQEMISSGVYPD 643



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 136/289 (47%), Gaps = 2/289 (0%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           I ++T++    R     EA+   +RM + GL P+++TY  I+D   K G     L+L  +
Sbjct: 178 IAFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRK 237

Query: 283 -GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG 341
               S  KP+ + +S +     + G     + +  EM+  G+ PNL  YN ++     +G
Sbjct: 238 MEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMINGFCSSG 297

Query: 342 KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYN 401
           +   A+ L  EM E  ++PD  T + LI    K     +A EL+  M       + I YN
Sbjct: 298 RWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGIIPNTITYN 357

Query: 402 TLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461
           ++++  +    ++ AER+F  M  +  C PD  +++ +++ Y     VD+ ++L  EMS 
Sbjct: 358 SMIDGFSKQNRLDAAERMFYLMA-TKGCSPDVITFSILIDGYCGAKRVDDGMKLLHEMSR 416

Query: 462 LGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
            G+  N +  T LI    +   ++  + +    I  GV P+   C  LL
Sbjct: 417 RGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNTLL 465



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 154/328 (46%), Gaps = 35/328 (10%)

Query: 205 LIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAIL 264
           ++  L  +M    I  +  +++ +I C   C+    A+  F ++ K G  P  VT+S +L
Sbjct: 94  VVISLHRKMEMRRIPCNIYSFTILIKCFCSCSKLPFALSTFGKITKLGFHPSLVTFSTLL 153

Query: 265 ----------------------DVYA---------KSGKVEEVLSLYERGVASGWKPDPI 293
                                 +V A         + G+V E ++L +R V  G +P+ I
Sbjct: 154 HGLCVEDRVSEALHFFHQICKPNVIAFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQI 213

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLG-VQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
            +  +     + GD      +L++M+ +  ++PN+V+Y+ +++ + K G+   A++LF E
Sbjct: 214 TYGTIVDGMCKMGDTVSALNLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSE 273

Query: 353 MVESGLTPDEKTLTALIKIY-GKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411
           M E G++P+  T   +I  +    RW+ +A  L   M E K   D + ++ L+N     G
Sbjct: 274 MQEKGISPNLFTYNCMINGFCSSGRWS-EAQRLLREMFERKMSPDVVTFSVLINALVKEG 332

Query: 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC 471
              EAE L+ +M L     P+  +Y +M++ +     +D A  +F  M+  G + +V+  
Sbjct: 333 KFFEAEELYNEM-LPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITF 391

Query: 472 TCLIQCLGKARRIDDLVRVFGVSIDRGV 499
           + LI     A+R+DD +++      RG+
Sbjct: 392 SILIDGYCGAKRVDDGMKLLHEMSRRGL 419



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 91/360 (25%), Positives = 147/360 (40%), Gaps = 49/360 (13%)

Query: 187 TIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
            + Y+  +  L + GRQ    + L +EM    I  +  TY+ +I        + EA    
Sbjct: 248 VVIYSAIIDGLWKDGRQTD-AQNLFSEMQEKGISPNLFTYNCMINGFCSSGRWSEAQRLL 306

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYE----RGV----------------- 284
             M++  + PD VT+S +++   K GK  E   LY     RG+                 
Sbjct: 307 REMFERKMSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGIIPNTITYNSMIDGFSKQ 366

Query: 285 --------------ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
                           G  PD I FS+L   +  +   D    +L EM   G+  N + Y
Sbjct: 367 NRLDAAERMFYLMATKGCSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANTITY 426

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
            TL+    + G    A  L  EM+ SG+ P+  T   L+         KDALE+++ M++
Sbjct: 427 TTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNTLLDGLCNNGKLKDALEMFKVMQK 486

Query: 391 NKWPM-----------DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAM 439
           +K  +           D   YN L+    + G   EAE L+E+M       PD  +Y ++
Sbjct: 487 SKMDLDASHPFNDVEPDVQTYNILICGLINEGKFSEAEELYEEMPHRGLV-PDTITYNSV 545

Query: 440 LNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGV 499
           ++       +D A ++F+ M   G + +V+  T LI    K  R+ D + VF     RG+
Sbjct: 546 IDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTTLINGYCKVGRVGDGLEVFCEMGRRGI 605



 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 112/246 (45%), Gaps = 1/246 (0%)

Query: 216 NEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEE 275
           + I+ + + YS II    +     +A   F  M + G+ P+  TY+ +++ +  SG+  E
Sbjct: 242 SRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMINGFCSSGRWSE 301

Query: 276 VLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLE 335
              L          PD + FSVL     + G +     +  EM   G+ PN + YN++++
Sbjct: 302 AQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGIIPNTITYNSMID 361

Query: 336 AMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPM 395
              K  +   A  +F  M   G +PD  T + LI  Y  A+   D ++L   M       
Sbjct: 362 GFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVA 421

Query: 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIEL 455
           + I Y TL++    +G +  A  L ++M  S  C P+  +   +L+   + G + +A+E+
Sbjct: 422 NTITYTTLIHGFCQLGNLNAALDLLQEMISSGVC-PNVVTCNTLLDGLCNNGKLKDALEM 480

Query: 456 FEEMSE 461
           F+ M +
Sbjct: 481 FKVMQK 486



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 87/169 (51%), Gaps = 6/169 (3%)

Query: 216 NEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEE 275
           N++E D  TY+ +I        F EA E +E M   GL+PD +TY++++D   K  +++E
Sbjct: 498 NDVEPDVQTYNILICGLINEGKFSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDE 557

Query: 276 VLSLYERGVASGWKPDPIAFSVLGKMFGESGDY-DGIRYVLQEMKSLGVQPNLVVYNTLL 334
              +++   + G+ PD + F+ L   + + G   DG+  V  EM   G+  N + Y TL+
Sbjct: 558 ATQMFDSMGSKGFSPDVVTFTTLINGYCKVGRVGDGLE-VFCEMGRRGIVANAITYRTLI 616

Query: 335 EAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALE 383
               + G    A  +F EM+ SG+ PD  T+  ++       W+K+ L+
Sbjct: 617 HGFCQVGNINGALDIFQEMISSGVYPDTITIRNML----TGLWSKEELK 661



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 60/265 (22%), Positives = 116/265 (43%), Gaps = 4/265 (1%)

Query: 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
            D+AI+ F  M ++  +P  + +  +L V  +  + + V+SL+ +        +  +F++
Sbjct: 57  LDDAIDLFGYMVRSRPLPCVIDFCKLLGVVVRMERPDVVISLHRKMEMRRIPCNIYSFTI 116

Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
           L K F              ++  LG  P+LV ++TLL  +    +   A   F ++ +  
Sbjct: 117 LIKCFCSCSKLPFALSTFGKITKLGFHPSLVTFSTLLHGLCVEDRVSEALHFFHQICK-- 174

Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417
             P+    T L+    +     +A+ L +RM E+    + I Y T+++    +G    A 
Sbjct: 175 --PNVIAFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSAL 232

Query: 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
            L   M+     KP+   Y+A+++     G   +A  LF EM E G++ N+    C+I  
Sbjct: 233 NLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMING 292

Query: 478 LGKARRIDDLVRVFGVSIDRGVKPD 502
              + R  +  R+     +R + PD
Sbjct: 293 FCSSGRWSEAQRLLREMFERKMSPD 317


>gi|356528730|ref|XP_003532952.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g73710-like [Glycine max]
          Length = 963

 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 171/363 (47%), Gaps = 13/363 (3%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D +  + +I    +  L+D+AI  F+ M   G  P+E TY++++ + + +  V++ + L 
Sbjct: 480 DVLECNVMIKAYGKAKLYDKAISLFKGMKNHGTWPNESTYNSLVQMLSGADLVDQAMDLV 539

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
           +     G+KP    FS +   +   G       V +EM   GV+PN VVY +L+    + 
Sbjct: 540 DEMQEVGFKPPCQTFSAVIGCYARLGQLSDAVSVFKEMVRTGVKPNEVVYGSLINGFAEH 599

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G    A   F  M ESGL+ +   LT+L+K Y K    + A  ++ERM+  +  +D +  
Sbjct: 600 GSLEEALKYFHMMEESGLSSNLVVLTSLLKSYCKVGNLEGAKAIYERMKNMEGGLDLVAC 659

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           N+++ + AD+GLV EA+  FE+++  +  + D  SY  ++ +Y   G +D AIE+ EEM 
Sbjct: 660 NSMIGLFADLGLVSEAKLAFENLR--EMGRADAISYATIMYLYKGVGLIDEAIEIAEEMK 717

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCET-S 519
             G+  + +    ++ C     +  +   +    I + + P+D     L +++      +
Sbjct: 718 LSGLLRDCVSYNKVLVCYAANGQFYECGELIHEMISQKLLPNDGTFKVLFTILKKGGIPT 777

Query: 520 EDVGKVITCLQQANP-----KLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCN 574
           E V ++ +  Q+  P        A  +L+     G  N+  E      ++EVD      N
Sbjct: 778 EAVAQLESSYQEGKPYARQTTFTALYSLV-----GMHNLALESAQTFIESEVDLDSSAFN 832

Query: 575 CLI 577
             I
Sbjct: 833 VAI 835



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 96/396 (24%), Positives = 166/396 (41%), Gaps = 29/396 (7%)

Query: 144 AITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQF 203
           A++ +P   + +   ++L     WQ++   F W KSQ  +    I YNV +++L   +Q+
Sbjct: 62  ALSTLPSPLSPKEITVLLKEQSTWQRAARIFEWFKSQTWYTPNAIHYNVVLRALGKAQQW 121

Query: 204 QLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAI 263
             +     +M  N +   N TYS ++    +  L  EA+ W   M   G  PDEVT   +
Sbjct: 122 DQLRLCWLDMAKNGVLPTNNTYSMLVDVYGKAGLVQEALLWIRHMRVRGFFPDEVTMCTV 181

Query: 264 LDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGV 323
           + V    G  +     Y+     GW    +  + L     E  D  GI        S+G+
Sbjct: 182 VKVLKDVGDFDRAHRFYK-----GWCEGKVELNDL-----ELEDSLGINNSSNGSASMGI 231

Query: 324 QPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD-EKTLTALIKIYGKARWAKDAL 382
                +   L +  G+A   G ARS     +     P    T   LI +YGKA    +A 
Sbjct: 232 SFKQFLSTELFKIGGRAPVSGEARSTNSSSLNGPQKPRLSNTYNVLIDLYGKAGRLSEAA 291

Query: 383 ELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNI 442
           E++  M +    +D   +NT++ +C   G + EAE L   M+      PD  ++   L++
Sbjct: 292 EVFAEMLKAGVAVDVWTFNTMIFVCGSQGDLAEAEALLGMME-EKGVAPDTKTFNIFLSL 350

Query: 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK---ARRIDDLV----RVFGVSI 495
           Y    ++  A+  ++ + E G+  + +    L+  L +    R ++DL+    R F VS+
Sbjct: 351 YAEARDIGAAVLCYKRIREAGLCPDEVTYRALLGVLCRKNMVREVEDLIDEMERAF-VSV 409

Query: 496 DRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ 531
           D           C+  +V +     DV K    L++
Sbjct: 410 DE---------HCVPGIVEMYVGEGDVDKAFDLLKK 436



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 144/303 (47%), Gaps = 4/303 (1%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           +  I+   L P E + Y   +  L      + +E L +EM    + +D      I+    
Sbjct: 364 YKRIREAGLCPDE-VTYRALLGVLCRKNMVREVEDLIDEMERAFVSVDEHCVPGIVEMYV 422

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV-ASGWKPDP 292
                D+A +  ++    G M   +  SAI+DV+A+ G  EE   ++ RG   +G K D 
Sbjct: 423 GEGDVDKAFDLLKKFQVNGEMSSNIR-SAIMDVFAEKGLWEEAEDVFYRGRNLAGRKRDV 481

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           +  +V+ K +G++  YD    + + MK+ G  PN   YN+L++ +  A     A  L DE
Sbjct: 482 LECNVMIKAYGKAKLYDKAISLFKGMKNHGTWPNESTYNSLVQMLSGADLVDQAMDLVDE 541

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M E G  P  +T +A+I  Y +     DA+ +++ M       + ++Y +L+N  A+ G 
Sbjct: 542 MQEVGFKPPCQTFSAVIGCYARLGQLSDAVSVFKEMVRTGVKPNEVVYGSLINGFAEHGS 601

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
           +EEA + F  M+ S     +    T++L  Y   GN++ A  ++E M  +   ++++ C 
Sbjct: 602 LEEALKYFHMMEESG-LSSNLVVLTSLLKSYCKVGNLEGAKAIYERMKNMEGGLDLVACN 660

Query: 473 CLI 475
            +I
Sbjct: 661 SMI 663



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 95/437 (21%), Positives = 183/437 (41%), Gaps = 61/437 (13%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           TY+ +I    +     EA E F  M K G+  D  T++ ++ V    G + E  +L    
Sbjct: 273 TYNVLIDLYGKAGRLSEAAEVFAEMLKAGVAVDVWTFNTMIFVCGSQGDLAEAEALLGMM 332

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
              G  PD   F++   ++ E+ D        + ++  G+ P+ V Y  LL  + +    
Sbjct: 333 EEKGVAPDTKTFNIFLSLYAEARDIGAAVLCYKRIREAGLCPDEVTYRALLGVLCRKNMV 392

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
                L DEM  + ++ DE  +  ++++Y        A +L ++ + N   M   + + +
Sbjct: 393 REVEDLIDEMERAFVSVDEHCVPGIVEMYVGEGDVDKAFDLLKKFQVNG-EMSSNIRSAI 451

Query: 404 LNMCADIGLVEEAERLFE---------------DMKLSDYCK------------------ 430
           +++ A+ GL EEAE +F                ++ +  Y K                  
Sbjct: 452 MDVFAEKGLWEEAEDVFYRGRNLAGRKRDVLECNVMIKAYGKAKLYDKAISLFKGMKNHG 511

Query: 431 --PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLV 488
             P+  +Y +++ +      VD A++L +EM E+G        + +I C  +  ++ D V
Sbjct: 512 TWPNESTYNSLVQMLSGADLVDQAMDLVDEMQEVGFKPPCQTFSAVIGCYARLGQLSDAV 571

Query: 489 RVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQA--NPKLVAFLNLIED- 545
            VF   +  GVKP++ + G L++  +   + E+  K    ++++  +  LV   +L++  
Sbjct: 572 SVFKEMVRTGVKPNEVVYGSLINGFAEHGSLEEALKYFHMMEESGLSSNLVVLTSLLKSY 631

Query: 546 ----NSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRN-----------RNLNE--R 588
               N  G + I E  +N+    ++ A    CN +I +  +            NL E  R
Sbjct: 632 CKVGNLEGAKAIYERMKNMEGGLDLVA----CNSMIGLFADLGLVSEAKLAFENLREMGR 687

Query: 589 AHELLYLGTLYGLYPGL 605
           A  + Y   +Y LY G+
Sbjct: 688 ADAISYATIMY-LYKGV 703



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 71/356 (19%), Positives = 154/356 (43%), Gaps = 43/356 (12%)

Query: 199 FGRQFQLIEQLA--NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPD 256
           + R  QL + ++   EMV   ++ + + Y ++I         +EA+++F  M ++GL  +
Sbjct: 561 YARLGQLSDAVSVFKEMVRTGVKPNEVVYGSLINGFAEHGSLEEALKYFHMMEESGLSSN 620

Query: 257 EVTYSAILDVYAKSGKVEEVLSLYER-----------------------GVASGWK---- 289
            V  +++L  Y K G +E   ++YER                       G+ S  K    
Sbjct: 621 LVVLTSLLKSYCKVGNLEGAKAIYERMKNMEGGLDLVACNSMIGLFADLGLVSEAKLAFE 680

Query: 290 -------PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
                   D I+++ +  ++   G  D    + +EMK  G+  + V YN +L      G+
Sbjct: 681 NLREMGRADAISYATIMYLYKGVGLIDEAIEIAEEMKLSGLLRDCVSYNKVLVCYAANGQ 740

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL-ELWERMRENKWPMDFILYN 401
                 L  EM+   L P++ T   L  I  K     +A+ +L    +E K       + 
Sbjct: 741 FYECGELIHEMISQKLLPNDGTFKVLFTILKKGGIPTEAVAQLESSYQEGKPYARQTTFT 800

Query: 402 TLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461
            L ++     L  E+ + F + ++      D+ ++   +  YGS G+++ A+ ++ +M +
Sbjct: 801 ALYSLVGMHNLALESAQTFIESEVD----LDSSAFNVAIYAYGSAGDINKALNIYMKMRD 856

Query: 462 LGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRG-VKPDDRLCGCLLSVVSLC 516
             +  +++    L+ C GKA  ++ + +++   ++ G ++ ++ L   ++    +C
Sbjct: 857 EHLGPDLVTYIYLVGCYGKAGMVEGVKQIYS-QLEYGEIESNESLFKAIIDAYKIC 911



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 84/188 (44%), Gaps = 4/188 (2%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + YN  +       QF    +L +EM+S ++  ++ T+  + T  K+  +  EA+   
Sbjct: 724 DCVSYNKVLVCYAANGQFYECGELIHEMISQKLLPNDGTFKVLFTILKKGGIPTEAVAQL 783

Query: 246 ERMYKTGL-MPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
           E  Y+ G     + T++A+   Y+  G     L   +  + S    D  AF+V    +G 
Sbjct: 784 ESSYQEGKPYARQTTFTAL---YSLVGMHNLALESAQTFIESEVDLDSSAFNVAIYAYGS 840

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
           +GD +    +  +M+   + P+LV Y  L+   GKAG     + ++ ++    +  +E  
Sbjct: 841 AGDINKALNIYMKMRDEHLGPDLVTYIYLVGCYGKAGMVEGVKQIYSQLEYGEIESNESL 900

Query: 365 LTALIKIY 372
             A+I  Y
Sbjct: 901 FKAIIDAY 908


>gi|224713522|gb|ACN62068.1| PPR-814b [Zea mays]
          Length = 814

 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 89/368 (24%), Positives = 174/368 (47%), Gaps = 4/368 (1%)

Query: 134 CDNTEEAFLRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVT 193
           CD  +E   R I   P   T  + +  L   +   K+  F   + ++ + P    + N+ 
Sbjct: 239 CDLFKEMVQRGIP--PDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLI 296

Query: 194 MKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGL 253
                 G Q++   ++  EM  + I  D +T S ++    +     EA + F+ M   G 
Sbjct: 297 YGYSSTG-QWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQ 355

Query: 254 MPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRY 313
            P+  +Y+ +L+ YA  G + ++  L++  +  G  PD   F+VL K +   G  D    
Sbjct: 356 NPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMI 415

Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYG 373
           +  EM+  GV+P++V Y T++ A+ + GK   A   F++M++ G+ PD+     LI+ + 
Sbjct: 416 IFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFC 475

Query: 374 KARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDN 433
                  A EL   +  N   +D + +++++N    +G V +A+ +F D+ ++    P  
Sbjct: 476 THGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIF-DLTVNVGLHPTA 534

Query: 434 YSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGV 493
             Y+ +++ Y   G ++ A+ +F+ M   G+  N +    L+    K  RID+ + +F  
Sbjct: 535 VVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFRE 594

Query: 494 SIDRGVKP 501
            + +G+KP
Sbjct: 595 MLQKGIKP 602



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 145/290 (50%), Gaps = 2/290 (0%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           FN +  Q + P +  ++ +       G   +  ++L +E+++N + LD + +S+II    
Sbjct: 452 FNQMIDQGVAPDKYAYHCLIQGFCTHGSLLK-AKELISEIMNNGMHLDIVFFSSIINNLC 510

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
           +     +A   F+     GL P  V YS ++D Y   GK+E+ L +++  V++G +P+ +
Sbjct: 511 KLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDV 570

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
            +  L   + + G  D    + +EM   G++P+ ++YN +++ + +AG+   A+  F EM
Sbjct: 571 VYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEM 630

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
            ESG+  ++ T   +++   K R   +A+ L++ +R     ++ I  NT++        V
Sbjct: 631 TESGIAMNKCTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIAGMFQTRRV 690

Query: 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           EEA+ LF  +  S    P   +Y+ M+      G V+ A ++F  M   G
Sbjct: 691 EEAKDLFASISRSGLV-PCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAG 739



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 144/318 (45%), Gaps = 41/318 (12%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGL------------------------------ 253
           TY+ ++ C  R +  + A+ +F ++ +TGL                              
Sbjct: 113 TYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLKGFCEAKRTDEALDILLHR 172

Query: 254 ------MPDEVTYSAILDVY---AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
                 +PD  +YS +L       KSG+ +++L +   G A    PD +A+S +   F +
Sbjct: 173 TPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAV-CSPDVVAYSTVIDGFFK 231

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
            GD +    + +EM   G+ P+ V Y++++ A+ KA     A +   +MV  G+ P+  T
Sbjct: 232 EGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWT 291

Query: 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
              LI  Y      K+A+ +++ MR +    D +  + L+      G ++EA  +F+ M 
Sbjct: 292 YNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMA 351

Query: 425 LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484
           +     P+ +SYT MLN Y + G + +  +LF+ M   G+A ++     LI+       +
Sbjct: 352 MKGQ-NPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGML 410

Query: 485 DDLVRVFGVSIDRGVKPD 502
           D  + +F    D GVKPD
Sbjct: 411 DKAMIIFNEMRDHGVKPD 428



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 137/286 (47%), Gaps = 1/286 (0%)

Query: 206 IEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
           +  L + M+ + I  D  T++ +I     C + D+A+  F  M   G+ PD VTY  ++ 
Sbjct: 378 MTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIA 437

Query: 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325
              + GK+++ +  + + +  G  PD  A+  L + F   G     + ++ E+ + G+  
Sbjct: 438 ALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHL 497

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
           ++V +++++  + K G+   A+++FD  V  GL P     + L+  Y      + AL ++
Sbjct: 498 DIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVF 557

Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445
           + M       + ++Y TL+N    IG ++E   LF +M L    KP    Y  +++    
Sbjct: 558 DAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREM-LQKGIKPSTILYNIIIDGLFE 616

Query: 446 GGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
            G    A   F EM+E G+A+N      +++ L K R  D+ + +F
Sbjct: 617 AGRTVPAKVKFHEMTESGIAMNKCTYNIVLRGLFKNRCFDEAIFLF 662



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 128/256 (50%), Gaps = 1/256 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D + YST+I    +    ++A + F+ M + G+ PD VTYS+++    K+  +++  +  
Sbjct: 218 DVVAYSTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFL 277

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
            + V  G  P+   ++ L   +  +G +     V +EM+   + P++V  + L+ ++ K 
Sbjct: 278 RQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKY 337

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           GK   AR +FD M   G  P+  + T ++  Y       D  +L++ M  +    D   +
Sbjct: 338 GKIKEARDVFDTMAMKGQNPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTF 397

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           N L+   A+ G++++A  +F +M+     KPD  +Y  ++      G +D+A+E F +M 
Sbjct: 398 NVLIKAYANCGMLDKAMIIFNEMR-DHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMI 456

Query: 461 ELGVAINVMGCTCLIQ 476
           + GVA +     CLIQ
Sbjct: 457 DQGVAPDKYAYHCLIQ 472



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 147/342 (42%), Gaps = 12/342 (3%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           K+   FN ++   + P    +  V     R G+    +E+  N+M+   +  D   Y  +
Sbjct: 412 KAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKF-NQMIDQGVAPDKYAYHCL 470

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
           I          +A E    +   G+  D V +S+I++   K G+V +  ++++  V  G 
Sbjct: 471 IQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGL 530

Query: 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348
            P  + +S+L   +   G  +    V   M S G++PN VVY TL+    K G+     S
Sbjct: 531 HPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLS 590

Query: 349 LFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL---- 404
           LF EM++ G+ P       +I    +A     A   +  M E+   M+   YN +L    
Sbjct: 591 LFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYNIVLRGLF 650

Query: 405 -NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
            N C D     EA  LF++++  +  K +  +   M+        V+ A +LF  +S  G
Sbjct: 651 KNRCFD-----EAIFLFKELRAMNV-KINIITLNTMIAGMFQTRRVEEAKDLFASISRSG 704

Query: 464 VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRL 505
           +   V+  + +I  L K   +++   +F    + G +PD RL
Sbjct: 705 LVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRL 746



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/236 (19%), Positives = 109/236 (46%), Gaps = 8/236 (3%)

Query: 177 IKSQNLFPMET--------IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           + +QN+F +          + Y++ M       + +   ++ + MVS  IE +++ Y T+
Sbjct: 516 MDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTL 575

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
           +    +    DE +  F  M + G+ P  + Y+ I+D   ++G+       +     SG 
Sbjct: 576 VNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGI 635

Query: 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348
             +   ++++ +   ++  +D   ++ +E++++ V+ N++  NT++  M +  +   A+ 
Sbjct: 636 AMNKCTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIAGMFQTRRVEEAKD 695

Query: 349 LFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
           LF  +  SGL P   T + +I    K    ++A +++  M+      D  L N ++
Sbjct: 696 LFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVV 751



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 91/183 (49%), Gaps = 2/183 (1%)

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382
           + P    Y  L++   +A +P LA + F +++ +GL  +      L+K + +A+   +AL
Sbjct: 107 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLKGFCEAKRTDEAL 166

Query: 383 E-LWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM-KLSDYCKPDNYSYTAML 440
           + L  R  E     D   Y+ LL    D G   +A+ L   M +    C PD  +Y+ ++
Sbjct: 167 DILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYSTVI 226

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
           + +   G+V+ A +LF+EM + G+  + +  + ++  L KAR +D         +++GV 
Sbjct: 227 DGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVL 286

Query: 501 PDD 503
           P++
Sbjct: 287 PNN 289



 Score = 43.5 bits (101), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 37/187 (19%), Positives = 84/187 (44%), Gaps = 2/187 (1%)

Query: 187 TIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           TI YN+ +  L   GR      +  +EM  + I ++  TY+ ++    +   FDEAI  F
Sbjct: 604 TILYNIIIDGLFEAGRTVPAKVKF-HEMTESGIAMNKCTYNIVLRGLFKNRCFDEAIFLF 662

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           + +    +  + +T + ++    ++ +VEE   L+     SG  P  + +S++     + 
Sbjct: 663 KELRAMNVKINIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKE 722

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G  +    +   M++ G +P+  + N ++  + K  +   A +   ++ E   + +  T 
Sbjct: 723 GLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTT 782

Query: 366 TALIKIY 372
             L+ ++
Sbjct: 783 MLLVDLF 789


>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 100/381 (26%), Positives = 176/381 (46%), Gaps = 39/381 (10%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           +N  + SL   + +  +  L+ +M    I+ + +  + +I C  +  L   A   F ++ 
Sbjct: 88  FNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKIL 147

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
           K G +PD +T++ +       G++++    +++ VA G+  D I++  L     + G+  
Sbjct: 148 KMGYVPDTITFTTLSKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETR 207

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               +LQ +    VQPN+V+YNT++++M K      A  LF EMV  G++PD  T +ALI
Sbjct: 208 AALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALI 267

Query: 370 KIYGKARWAKDALELWERM-RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK---- 424
             +      KDA++L+ +M  EN  P D   +N L+N     G ++E + +F+ M     
Sbjct: 268 SGFCILGKLKDAIDLFNKMILENIKP-DVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGI 326

Query: 425 ----------LSDYC--------------------KPDNYSYTAMLNIYGSGGNVDNAIE 454
                     +  YC                     PD  SY+ M+N +      D A+ 
Sbjct: 327 KPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMN 386

Query: 455 LFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVS 514
           LF+EM    +  +V+  + LI  L K+ RI   +++     DRGV P+  +C     + +
Sbjct: 387 LFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPN--ICTYNSILDA 444

Query: 515 LCETSEDVGKVITCLQQANPK 535
           LC+T + V K I  L +   K
Sbjct: 445 LCKTHQ-VDKAIALLTKFKDK 464



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 150/290 (51%), Gaps = 5/290 (1%)

Query: 215 SNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVE 274
            N ++ + + Y+TII    +  L +EA + F  M   G+ PD VTYSA++  +   GK++
Sbjct: 218 GNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALISGFCILGKLK 277

Query: 275 EVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLL 334
           + + L+ + +    KPD   F++L   F + G     + V   M   G++PN V YN+L+
Sbjct: 278 DAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLM 337

Query: 335 EAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM-RENKW 393
           +      +   A+S+F+ M + G+ PD ++ + +I  + K +   +A+ L++ M R+N  
Sbjct: 338 DGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNII 397

Query: 394 PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNY-SYTAMLNIYGSGGNVDNA 452
           P D + Y++L++  +  G +  A +L + M   D   P N  +Y ++L+       VD A
Sbjct: 398 P-DVVTYSSLIDGLSKSGRISYALQLVDQMH--DRGVPPNICTYNSILDALCKTHQVDKA 454

Query: 453 IELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           I L  +  + G   ++   + LI+ L ++ +++D  +VF   + +G   D
Sbjct: 455 IALLTKFKDKGFQPDISTYSILIKGLCQSGKLEDARKVFEDLLVKGYNLD 504



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 169/373 (45%), Gaps = 13/373 (3%)

Query: 201 RQFQLIEQLANEMVS----NEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPD 256
           ++FQ  + L N   +    +  +++ I+YS+  T     N  D+A+  F R+ +    P 
Sbjct: 25  KKFQSFQFLKNTHFNFIPYSSSKINFISYSSTSTTFHSNNDVDDAVSLFNRLLRRNTTPP 84

Query: 257 EVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQ 316
              ++ IL    KS     VL L ++    G KP+ +  ++L   F + G       V  
Sbjct: 85  AFEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFA 144

Query: 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
           ++  +G  P+ + + TL + +   G+   A    D++V  G   D+ +   LI    K  
Sbjct: 145 KILKMGYVPDTITFTTLSKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVG 204

Query: 377 WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY 436
             + AL+L +R+  N    + ++YNT+++    + LV EA  LF +M +S    PD  +Y
Sbjct: 205 ETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEM-VSKGISPDVVTY 263

Query: 437 TAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496
           +A+++ +   G + +AI+LF +M    +  +V     L+    K  ++ +   VF + + 
Sbjct: 264 SALISGFCILGKLKDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMK 323

Query: 497 RGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQA--NPKLVAFLNLIEDNSTGFENIK 554
           +G+KP+      L+    L +       +   + Q   NP + ++  +I     GF  IK
Sbjct: 324 QGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMIN----GFCKIK 379

Query: 555 --EEFRNVIKDTE 565
             +E  N+ K+  
Sbjct: 380 KFDEAMNLFKEMH 392



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 130/295 (44%), Gaps = 39/295 (13%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           F+ +  Q + P   + YN  M      ++    + + N M    +  D  +YS +I    
Sbjct: 318 FDMMMKQGIKP-NFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFC 376

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
           +   FDEA+  F+ M++  ++PD VTYS+++D  +KSG++   L L              
Sbjct: 377 KIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQL-------------- 422

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
                                + +M   GV PN+  YN++L+A+ K  +   A +L  + 
Sbjct: 423 ---------------------VDQMHDRGVPPNICTYNSILDALCKTHQVDKAIALLTKF 461

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
            + G  PD  T + LIK   ++   +DA +++E +    + +D   Y  ++      GL 
Sbjct: 462 KDKGFQPDISTYSILIKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTIMIQGFCVEGLF 521

Query: 414 EEAERLFEDMKLSDYCKPDNYSY-TAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
            EA  L   M+  + C PD  +Y   +L+++    N D A +L  EM   G+ +N
Sbjct: 522 NEALALLSKME-DNGCIPDAKTYEIIILSLFKKDEN-DMAEKLLREMIARGLPLN 574



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 98/208 (47%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           Y++ +      ++F     L  EM    I  D +TYS++I    +      A++  ++M+
Sbjct: 368 YSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMH 427

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
             G+ P+  TY++ILD   K+ +V++ ++L  +    G++PD   +S+L K   +SG  +
Sbjct: 428 DRGVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSGKLE 487

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
             R V +++   G   ++  Y  +++     G    A +L  +M ++G  PD KT   +I
Sbjct: 488 DARKVFEDLLVKGYNLDVYAYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIII 547

Query: 370 KIYGKARWAKDALELWERMRENKWPMDF 397
               K      A +L   M     P++F
Sbjct: 548 LSLFKKDENDMAEKLLREMIARGLPLNF 575


>gi|410110059|gb|AFV61109.1| pentatricopeptide repeat-containing protein 123, partial
           [Acantholippia salsoloides]
          Length = 433

 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 89/293 (30%), Positives = 148/293 (50%), Gaps = 7/293 (2%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
           +EM    +  D  TYST+IT   +  LFD A+ W ++M +  +  D V YS ++++  K 
Sbjct: 1   DEMRDRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKL 60

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
               + +S++ R   SG+ PD +A++    +FG++  +   R ++ EM+  GV PN   Y
Sbjct: 61  CDYSKAISIFSRLKRSGFTPDLVAYNAXINVFGKAKLFREARSLISEMRIAGVMPNTASY 120

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
           +TLL    +  K   A S+F E+ E     D  T   +I +YG+   AK+A +L+  MR+
Sbjct: 121 STLLTMYVENKKFLEALSVFSELREMKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK 180

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
                + + YNTLL +  D  L  EA  LF  M+  +  + +  +Y +M+ IYG     +
Sbjct: 181 MGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKN-IEQNVVTYNSMMMIYGKTLEHE 239

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF------GVSIDR 497
            A  L +EM   G+  N +  + +I   GK  ++D    +F      GV ID+
Sbjct: 240 KANNLIQEMQGRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQ 292



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 81/366 (22%), Positives = 166/366 (45%), Gaps = 6/366 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K     P + + YN  +      + F+    L +EM    +  +  +YS
Sbjct: 63  YSKAISIFSRLKRSGFTP-DLVAYNAXINVFGKAKLFREARSLISEMRIAGVMPNTASYS 121

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  + +   + D  T + ++DVY + G  +E   L+      
Sbjct: 122 TLLTMYVENKKFLEALSVFSELREMKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 181

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   ++ N+V YN+++   GK  +   A
Sbjct: 182 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKA 241

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R +   +D IL+ T++  
Sbjct: 242 NNLIQEMQGRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVA 301

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K      PDN      ++I    G ++ A  +F    + G   
Sbjct: 302 YERAGLVAHAKRLLHELK-----SPDNIPRDTAIHILAGAGRIEEATYVFRRAIDAGEVK 356

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           ++     +I    K ++  ++V VF      G  PD  +   +L+        +    V 
Sbjct: 357 DITVFERMIHLFSKYKKYANVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANSVY 416

Query: 527 TCLQQA 532
             +Q+ 
Sbjct: 417 MEMQEV 422



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 120/246 (48%), Gaps = 5/246 (2%)

Query: 218 IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL 277
           IE + ++Y+T++       LF EAI  F  M +  +  + VTY++++ +Y K+ + E+  
Sbjct: 183 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKAN 242

Query: 278 SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
           +L +     G +P+ I +S +  ++G+ G  D    + Q+++S GV+ + +++ T++ A 
Sbjct: 243 NLIQEMQGRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAY 302

Query: 338 GKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDF 397
            +AG    A+ L  E+     +PD       I I   A   ++A  ++ R  +     D 
Sbjct: 303 ERAGLVAHAKRLLHELK----SPDNIPRDTAIHILAGAGRIEEATYVFRRAIDAGEVKDI 358

Query: 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE 457
            ++  ++++ +          +F+ M+   Y  PD+     +LN YG     D A  ++ 
Sbjct: 359 TVFERMIHLFSKYKKYANVVEVFDKMRGLGYF-PDSNVIALVLNAYGKLHEFDKANSVYM 417

Query: 458 EMSELG 463
           EM E+G
Sbjct: 418 EMQEVG 423



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/217 (22%), Positives = 96/217 (44%), Gaps = 1/217 (0%)

Query: 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
           EM+   + P+   Y+TL+   GK G    A S   +M +  +  D    + LI++  K  
Sbjct: 2   EMRDRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLC 61

Query: 377 WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY 436
               A+ ++ R++ + +  D + YN  +N+     L  EA  L  +M+++    P+  SY
Sbjct: 62  DYSKAISIFSRLKRSGFTPDLVAYNAXINVFGKAKLFREARSLISEMRIAG-VMPNTASY 120

Query: 437 TAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496
           + +L +Y        A+ +F E+ E+   +++  C  +I   G+     +  ++F     
Sbjct: 121 STLLTMYVENKKFLEALSVFSELREMKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK 180

Query: 497 RGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN 533
            G++P+      LL V    E   +   +   +Q+ N
Sbjct: 181 MGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKN 217



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/240 (21%), Positives = 97/240 (40%), Gaps = 32/240 (13%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           P+  +    L +    + + ++   F  ++ +N+     + YN  M       + +    
Sbjct: 185 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNI-EQNVVTYNSMMMIYGKTLEHEKANN 243

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY- 267
           L  EM    IE ++ITYSTII+   +    D A   F+++  +G+  D++ +  ++  Y 
Sbjct: 244 LIQEMQGRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYE 303

Query: 268 ------------------------------AKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
                                         A +G++EE   ++ R + +G   D   F  
Sbjct: 304 RAGLVAHAKRLLHELKSPDNIPRDTAIHILAGAGRIEEATYVFRRAIDAGEVKDITVFER 363

Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
           +  +F +   Y  +  V  +M+ LG  P+  V   +L A GK  +   A S++ EM E G
Sbjct: 364 MIHLFSKYKKYANVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANSVYMEMQEVG 423


>gi|297743170|emb|CBI36037.3| unnamed protein product [Vitis vinifera]
          Length = 646

 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 157/322 (48%), Gaps = 3/322 (0%)

Query: 183 FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
           + ++   YN+ + +L    +   +  +  +M     E D  TY+ +I    +    DE++
Sbjct: 256 YKLDIFAYNMLLDALAKDNKVDQVYMVFKDMKRKHCEPDEYTYTIMIRMTGKIGKADESL 315

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVA--SGWKPDPIAFSVLGK 300
             F+ M + G  P+ + Y+ ++   A +  V++ + L+ + V   S    +   ++ L +
Sbjct: 316 TLFQEMTEKGYTPNLIAYNTMIQALANNRMVDKTIFLFSKMVVEVSNKFMNKSIYAYLVR 375

Query: 301 MFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTP 360
              + G       +   M S   + +   Y ++LE++  AGK   A  L  ++ E  ++ 
Sbjct: 376 TLSKLGHASEAHRLFCNMWSFHDEGDRDAYMSMLESLCDAGKTTEALDLLSKIHEKRIST 435

Query: 361 DEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLF 420
           D      ++   GK +   D  +L+E+M+++    D   YN L++     G VEEA ++F
Sbjct: 436 DTVMYNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDIFSYNILISSFGRAGRVEEAVKIF 495

Query: 421 EDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK 480
           E+++ S  CKPD  S+ +++N  G  G++D A   F+EM E G++ +V+  + LI+C GK
Sbjct: 496 EELENSS-CKPDIISFNSLINCLGKNGDIDEAHMRFKEMREEGLSPDVVTYSTLIECFGK 554

Query: 481 ARRIDDLVRVFGVSIDRGVKPD 502
             +++   R+F   +  G  P+
Sbjct: 555 TDKVEMACRLFDEMLAEGCSPN 576



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 142/323 (43%), Gaps = 38/323 (11%)

Query: 217 EIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV 276
           +++++  TY  ++    R N  ++A E +  + + G   D   Y+ +LD  AK  KV++V
Sbjct: 220 DLQMNCYTYKCLLQAHLRSNNSNKAFEVYVELRRRGYKLDIFAYNMLLDALAKDNKVDQV 279

Query: 277 LSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA 336
             +++       +PD   ++++ +M G+ G  D    + QEM   G  PNL+ YNT+++A
Sbjct: 280 YMVFKDMKRKHCEPDEYTYTIMIRMTGKIGKADESLTLFQEMTEKGYTPNLIAYNTMIQA 339

Query: 337 MG-------------------------------------KAGKPGLARSLFDEMVESGLT 359
           +                                      K G    A  LF  M      
Sbjct: 340 LANNRMVDKTIFLFSKMVVEVSNKFMNKSIYAYLVRTLSKLGHASEAHRLFCNMWSFHDE 399

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
            D     ++++    A    +AL+L  ++ E +   D ++YNT+L+    +    +   L
Sbjct: 400 GDRDAYMSMLESLCDAGKTTEALDLLSKIHEKRISTDTVMYNTVLSALGKLKKTSDLHDL 459

Query: 420 FEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479
           +E MK  D   PD +SY  +++ +G  G V+ A+++FEE+       +++    LI CLG
Sbjct: 460 YEKMK-QDGPSPDIFSYNILISSFGRAGRVEEAVKIFEELENSSCKPDIISFNSLINCLG 518

Query: 480 KARRIDDLVRVFGVSIDRGVKPD 502
           K   ID+    F    + G+ PD
Sbjct: 519 KNGDIDEAHMRFKEMREEGLSPD 541



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 106/195 (54%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L +++    I  D + Y+T+++   +     +  + +E+M + G  PD  +Y+ ++  + 
Sbjct: 424 LLSKIHEKRISTDTVMYNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDIFSYNILISSFG 483

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           ++G+VEE + ++E    S  KPD I+F+ L    G++GD D      +EM+  G+ P++V
Sbjct: 484 RAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEMREEGLSPDVV 543

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            Y+TL+E  GK  K  +A  LFDEM+  G +P+  T   L+    ++    +A++L+ ++
Sbjct: 544 TYSTLIECFGKTDKVEMACRLFDEMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKL 603

Query: 389 RENKWPMDFILYNTL 403
           ++     D I Y  L
Sbjct: 604 KQQGLTPDSITYAVL 618



 Score = 97.4 bits (241), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 132/286 (46%), Gaps = 5/286 (1%)

Query: 165 KFWQKSYFFFN--WIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDN 222
           +   K+ F F+   ++  N F  ++I+  +     + G   +      N M S   E D 
Sbjct: 344 RMVDKTIFLFSKMVVEVSNKFMNKSIYAYLVRTLSKLGHASEAHRLFCN-MWSFHDEGDR 402

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
             Y +++          EA++   ++++  +  D V Y+ +L    K  K  ++  LYE+
Sbjct: 403 DAYMSMLESLCDAGKTTEALDLLSKIHEKRISTDTVMYNTVLSALGKLKKTSDLHDLYEK 462

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
               G  PD  ++++L   FG +G  +    + +E+++   +P+++ +N+L+  +GK G 
Sbjct: 463 MKQDGPSPDIFSYNILISSFGRAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKNGD 522

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
              A   F EM E GL+PD  T + LI+ +GK    + A  L++ M       + + YN 
Sbjct: 523 IDEAHMRFKEMREEGLSPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCSPNIVTYNI 582

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
           LL+     G   EA  L+  +K      PD+ +Y A+L    SG +
Sbjct: 583 LLDCLERSGRTAEAVDLYAKLKQQG-LTPDSITY-AVLERLQSGSH 626



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 95/401 (23%), Positives = 166/401 (41%), Gaps = 27/401 (6%)

Query: 160 ILNSLKFWQKSYFFFNWIKSQNL--FPMETIFYNVTM------KSLRFGRQFQLIEQLAN 211
           IL  L     S  FF +  S N+  F   +  YN  +       +LR   +  LI  + +
Sbjct: 124 ILKCLNHPHLSLEFFRFC-SSNIPKFQHNSFTYNRLLVILSKPSALRDSERLDLIRAILD 182

Query: 212 EM----VSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           +M    V   I   NI        A     FD   +W        L  +  TY  +L  +
Sbjct: 183 DMERCGVRGSISTINILIGIFGGGADVERCFDLVKKW-------DLQMNCYTYKCLLQAH 235

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            +S    +   +Y      G+K D  A+++L     +    D +  V ++MK    +P+ 
Sbjct: 236 LRSNNSNKAFEVYVELRRRGYKLDIFAYNMLLDALAKDNKVDQVYMVFKDMKRKHCEPDE 295

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
             Y  ++   GK GK   + +LF EM E G TP+      +I+     R     + L+ +
Sbjct: 296 YTYTIMIRMTGKIGKADESLTLFQEMTEKGYTPNLIAYNTMIQALANNRMVDKTIFLFSK 355

Query: 388 M---RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYG 444
           M     NK+ M+  +Y  L+   + +G   EA RLF +M  S + + D  +Y +ML    
Sbjct: 356 MVVEVSNKF-MNKSIYAYLVRTLSKLGHASEAHRLFCNM-WSFHDEGDRDAYMSMLESLC 413

Query: 445 SGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR 504
             G    A++L  ++ E  ++ + +    ++  LGK ++  DL  ++      G  PD  
Sbjct: 414 DAGKTTEALDLLSKIHEKRISTDTVMYNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDIF 473

Query: 505 LCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAFLNLI 543
               L+S        E+  K+   L+ ++  P +++F +LI
Sbjct: 474 SYNILISSFGRAGRVEEAVKIFEELENSSCKPDIISFNSLI 514


>gi|115475155|ref|NP_001061174.1| Os08g0191900 [Oryza sativa Japonica Group]
 gi|40253652|dbj|BAD05595.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113623143|dbj|BAF23088.1| Os08g0191900 [Oryza sativa Japonica Group]
 gi|125602452|gb|EAZ41777.1| hypothetical protein OsJ_26318 [Oryza sativa Japonica Group]
 gi|215695295|dbj|BAG90486.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215704436|dbj|BAG93870.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 609

 Score =  125 bits (315), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 93/360 (25%), Positives = 172/360 (47%), Gaps = 11/360 (3%)

Query: 158 LLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGR--QFQLIEQLANEMVS 215
           L+    LK W        W+++Q+ +    +  +  M    +G+   F   E++   M  
Sbjct: 113 LMRFKQLKKWNLVSEILEWLRTQHWWNFSEM--DFLMLVTAYGKLGDFSRAERVLKYMNK 170

Query: 216 NEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEE 275
              +   I+ + ++    R   + +A   F RM  +G  P  VTY  IL  + +  K +E
Sbjct: 171 KGYKPSVISQTALMEAYGRAKQYRKAEAVFRRMQTSGPEPSAVTYQIILKSFVEGDKYKE 230

Query: 276 VLSLYE---RGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNT 332
             +++E       + +KPD   F ++  M+ ++GDY   R +  +M   G+  + V +N+
Sbjct: 231 AEAIFEDLLNEKRASFKPDQKMFHMMIYMYKKAGDYAQARKLFAQMSERGIPLSTVTFNS 290

Query: 333 LLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENK 392
           L+       +     S++D+M  + L PD  + + LIK YGKAR  ++AL ++E M +  
Sbjct: 291 LMSFETNYKE---VSSIYDQMQRTALKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAG 347

Query: 393 WPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNA 452
                  YN L++  A  GLVEEA  +F+ M+     +PD  SYT M+  Y +  ++D A
Sbjct: 348 VRPTRKSYNILIDAFAISGLVEEAHTVFKAMR-RHRVEPDLCSYTTMVLAYVNASDMDGA 406

Query: 453 IELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSV 512
            + F  + E G+  NV+    L++   K   ++ ++RV+     +GV+P+  +   ++ V
Sbjct: 407 EKFFRRIKEDGLKPNVVVYGTLMKGYSKLNNVERVMRVYERMRMQGVEPNQTIYTTIMDV 466



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 129/268 (48%), Gaps = 5/268 (1%)

Query: 179 SQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLF 238
           S+   P+ T+ +N  M    F   ++ +  + ++M    ++ D ++YS +I    +    
Sbjct: 277 SERGIPLSTVTFNSLMS---FETNYKEVSSIYDQMQRTALKPDVVSYSLLIKAYGKARRE 333

Query: 239 DEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
           +EA+  FE M   G+ P   +Y+ ++D +A SG VEE  ++++       +PD  +++ +
Sbjct: 334 EEALAVFEEMLDAGVRPTRKSYNILIDAFAISGLVEEAHTVFKAMRRHRVEPDLCSYTTM 393

Query: 299 GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
              +  + D DG     + +K  G++PN+VVY TL++   K         +++ M   G+
Sbjct: 394 VLAYVNASDMDGAEKFFRRIKEDGLKPNVVVYGTLMKGYSKLNNVERVMRVYERMRMQGV 453

Query: 359 TPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAER 418
            P++   T ++ ++G+     +A+  ++ M    +P D    N LL++       EEA  
Sbjct: 454 EPNQTIYTTIMDVHGRNSDFGNAVIWFKEMEARGYPADKKAKNILLSLAKTPEEQEEANE 513

Query: 419 LFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
           L  +  +    KPD  +Y   L I G+G
Sbjct: 514 LTGNCAIQLEAKPDGTTYG--LEINGTG 539



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 137/297 (46%), Gaps = 17/297 (5%)

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG---KVEEVLSLYERGVASGWK 289
           K+ NL  E +EW    +       E+ +  ++  Y K G   + E VL    +    G+K
Sbjct: 120 KKWNLVSEILEWLRTQHWWNF--SEMDFLMLVTAYGKLGDFSRAERVLKYMNK---KGYK 174

Query: 290 PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSL 349
           P  I+ + L + +G +  Y     V + M++ G +P+ V Y  +L++  +  K   A ++
Sbjct: 175 PSVISQTALMEAYGRAKQYRKAEAVFRRMQTSGPEPSAVTYQIILKSFVEGDKYKEAEAI 234

Query: 350 FDEMV---ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
           F++++    +   PD+K    +I +Y KA     A +L+ +M E   P+  + +N+L++ 
Sbjct: 235 FEDLLNEKRASFKPDQKMFHMMIYMYKKAGDYAQARKLFAQMSERGIPLSTVTFNSLMSF 294

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
             +    +E   +++ M+ +   KPD  SY+ ++  YG     + A+ +FEEM + GV  
Sbjct: 295 ETNY---KEVSSIYDQMQRTA-LKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRP 350

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVG 523
                  LI     +  +++   VF       V+PD  LC     V++    S+  G
Sbjct: 351 TRKSYNILIDAFAISGLVEEAHTVFKAMRRHRVEPD--LCSYTTMVLAYVNASDMDG 405



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/284 (21%), Positives = 132/284 (46%), Gaps = 13/284 (4%)

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
           W    + F +L   +G+ GD+     VL+ M   G +P+++    L+EA G+A +   A 
Sbjct: 138 WNFSEMDFLMLVTAYGKLGDFSRAERVLKYMNKKGYKPSVISQTALMEAYGRAKQYRKAE 197

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENK---WPMDFILYNTLL 404
           ++F  M  SG  P   T   ++K + +    K+A  ++E +   K   +  D  +++ ++
Sbjct: 198 AVFRRMQTSGPEPSAVTYQIILKSFVEGDKYKEAEAIFEDLLNEKRASFKPDQKMFHMMI 257

Query: 405 NMCADIGLVEEAERLFEDMKLSDYCKP-DNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
            M    G   +A +LF  M  S+   P    ++ ++++      N      ++++M    
Sbjct: 258 YMYKKAGDYAQARKLFAQM--SERGIPLSTVTFNSLMSF---ETNYKEVSSIYDQMQRTA 312

Query: 464 VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVG 523
           +  +V+  + LI+  GKARR ++ + VF   +D GV+P  +    L+   ++    E+  
Sbjct: 313 LKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKSYNILIDAFAISGLVEEAH 372

Query: 524 KVITCL--QQANPKLVAFLNLIED--NSTGFENIKEEFRNVIKD 563
            V   +   +  P L ++  ++    N++  +  ++ FR + +D
Sbjct: 373 TVFKAMRRHRVEPDLCSYTTMVLAYVNASDMDGAEKFFRRIKED 416


>gi|255661174|gb|ACU25756.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
          Length = 426

 Score =  125 bits (315), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 87/283 (30%), Positives = 146/283 (51%), Gaps = 7/283 (2%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D  TYST+IT   +  LFD A+ W ++M +  +  D V YS ++++  K     + +S++
Sbjct: 8   DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
            R   SG+ PD +A++ +  +FG++  +   R ++ EM++ GV P+   Y+TLL    + 
Sbjct: 68  SRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPDTASYSTLLTMYVEN 127

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
            K   A S+F EM E     D  T   +I +YG+   AK+A +L+  MR+     + + Y
Sbjct: 128 KKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSY 187

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           NTLL +  D  L  EA  LF  M+  +  + +  +Y +M+ IYG     + A  L +EM 
Sbjct: 188 NTLLRVYGDAELFGEAIHLFRLMQRKN-IEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 246

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVF------GVSIDR 497
             G+  N +  + +I   GK  ++D    +F      GV ID+
Sbjct: 247 NRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQ 289



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 83/367 (22%), Positives = 169/367 (46%), Gaps = 6/367 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K     P + + YN  +      + F+    L +EM +  +  D  +YS
Sbjct: 60  YSKAISIFSRLKRSGFTP-DLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPDTASYS 118

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY + G  +E   L+      
Sbjct: 119 TLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 178

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   ++ N+V YN+++   GK  +   A
Sbjct: 179 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKA 238

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R +   +D +LY T++  
Sbjct: 239 NNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVA 298

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K     +PDN      ++I    G ++ A  +F +  + G   
Sbjct: 299 YERAGLVAHAKRLLHELK-----RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVK 353

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           ++     +I    K ++  ++V VF      G  PD  +   +L+        +    V 
Sbjct: 354 DITVFERMIHLFSKYKKYGNVVEVFDEMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVY 413

Query: 527 TCLQQAN 533
             +Q+  
Sbjct: 414 MEMQEVG 420



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 138/271 (50%), Gaps = 1/271 (0%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
            +M  + +  D + YS +I  +++   + +AI  F R+ ++G  PD V Y+A+++V+ K+
Sbjct: 33  QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKA 92

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
               E  SL      +G  PD  ++S L  M+ E+  +     V  EM+ +    +L   
Sbjct: 93  KLFREARSLISEMRTAGVTPDTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTC 152

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
           N +++  G+ G    A  LF  M + G+ P+  +   L+++YG A    +A+ L+  M+ 
Sbjct: 153 NIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR 212

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
                + + YN+++ +       E+A  L ++M+ +   +P++ +Y+ +++I+G  G +D
Sbjct: 213 KNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ-NRGIEPNSITYSTIISIWGKVGKLD 271

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
            A  LF+++   GV I+ +    +I    +A
Sbjct: 272 RAAMLFQKLRSSGVDIDQVLYQTMIVAYERA 302



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 125/261 (47%), Gaps = 1/261 (0%)

Query: 252 GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGI 311
            L PD  TYS ++  + K G  +  LS  ++        D + +S L ++  +  DY   
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 312 RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371
             +   +K  G  P+LV YN ++   GKA     ARSL  EM  +G+TPD  + + L+ +
Sbjct: 64  ISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPDTASYSTLLTM 123

Query: 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
           Y + +   +AL ++  MRE K  +D    N ++++   +G+ +EA++LF  M+     +P
Sbjct: 124 YVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG-IEP 182

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           +  SY  +L +YG       AI LF  M    +  NV+    ++   GK    +    + 
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 242

Query: 492 GVSIDRGVKPDDRLCGCLLSV 512
               +RG++P+      ++S+
Sbjct: 243 QEMQNRGIEPNSITYSTIISI 263



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/242 (21%), Positives = 105/242 (43%), Gaps = 5/242 (2%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           P+  +    L +    + + ++   F  ++ +N+     + YN  M       + +    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNI-EQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  EM +  IE ++ITYSTII+   +    D A   F+++  +G+  D+V Y  ++  Y 
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYE 300

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           ++G V       +R +    +PD I   +   +   +G  +   +V ++    G   ++ 
Sbjct: 301 RAGLVAHA----KRLLHELKRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDIT 356

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
           V+  ++    K  K G    +FDEM   G  PD   +  ++  YGK      A +++  M
Sbjct: 357 VFERMIHLFSKYKKYGNVVEVFDEMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVYMEM 416

Query: 389 RE 390
           +E
Sbjct: 417 QE 418



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 96/244 (39%), Gaps = 36/244 (14%)

Query: 290 PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSL 349
           PD   +S L   FG+ G +D     LQ+M+   V  +LV+Y+ L+E   K      A S+
Sbjct: 7   PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66

Query: 350 FDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCAD 409
           F  +  SG TP                                   D + YN ++N+   
Sbjct: 67  FSRLKRSGFTP-----------------------------------DLVAYNAMINVFGK 91

Query: 410 IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVM 469
             L  EA  L  +M+ +    PD  SY+ +L +Y        A+ +F EM E+   +++ 
Sbjct: 92  AKLFREARSLISEMRTAG-VTPDTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLT 150

Query: 470 GCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCL 529
            C  +I   G+     +  ++F      G++P+      LL V    E   +   +   +
Sbjct: 151 TCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLM 210

Query: 530 QQAN 533
           Q+ N
Sbjct: 211 QRKN 214



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 87/191 (45%), Gaps = 3/191 (1%)

Query: 355 ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
           E  L+PD  T + LI  +GK      AL   ++M +++ P D +LY+ L+ +   +    
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
           +A  +F  +K S +  PD  +Y AM+N++G       A  L  EM   GV  +    + L
Sbjct: 62  KAISIFSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPDTASYSTL 120

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN- 533
           +    + ++  + + VF    +     D   C  ++ V      +++  K+   +++   
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180

Query: 534 -PKLVAFLNLI 543
            P +V++  L+
Sbjct: 181 EPNVVSYNTLL 191


>gi|308080398|ref|NP_001183938.1| PPR-814a [Zea mays]
 gi|223929924|gb|ACN24620.1| PPR-814a [Zea mays]
          Length = 814

 Score =  125 bits (315), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 89/368 (24%), Positives = 174/368 (47%), Gaps = 4/368 (1%)

Query: 134 CDNTEEAFLRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVT 193
           CD  +E   R I   P   T  + +  L   +   K+  F   + ++ + P    + N+ 
Sbjct: 239 CDLFKEMVQRGIP--PDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLI 296

Query: 194 MKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGL 253
                 G Q++   ++  EM    I  D +T++ ++    +     EA + F+ M   G 
Sbjct: 297 YGYSSTG-QWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQ 355

Query: 254 MPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRY 313
            PD  +Y+ +L+ YA  G + ++  L++  +  G  P    F+VL K +   G  D    
Sbjct: 356 NPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMI 415

Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYG 373
           +  EM+  GV+PN++ Y T++ A+ + GK   A   F++M++ G+ PD+     LI+ + 
Sbjct: 416 IFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFC 475

Query: 374 KARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDN 433
                  A EL   +  N   +D +L+++++N    +G V +A+ +F D+ ++    P  
Sbjct: 476 THGSLLKAKELISEIMNNGMHLDIVLFSSIINNLCKLGRVMDAQNIF-DLTVNVGLHPTA 534

Query: 434 YSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGV 493
             Y+ +++ Y   G ++ A+ +F+ M   G+  N +    L+    K  RID+ + +F  
Sbjct: 535 VVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFRE 594

Query: 494 SIDRGVKP 501
            + +G+KP
Sbjct: 595 MLQKGIKP 602



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 93/361 (25%), Positives = 157/361 (43%), Gaps = 76/361 (21%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS-LYER 282
           TY+ ++ C  R +  + A+ +F ++ +TGL  D +  + +L  + ++ + +E L  L  R
Sbjct: 113 TYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEALDILLHR 172

Query: 283 GVASGWKPDPIAFSVLGKMF---GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
               G  PD  ++S+L K     G+SG  D +  ++ E  ++   P++V YNT+++   K
Sbjct: 173 TPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAV-CSPDVVAYNTVIDGFFK 231

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR---------------------WA 378
            G    A  LF EMV+ G+ PD  T ++++    KAR                     W 
Sbjct: 232 EGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWT 291

Query: 379 --------------KDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
                         K+A+ +++ MR      D + +N L+      G ++EA  +F+ M 
Sbjct: 292 YNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMA 351

Query: 425 LSDYCKPDNYSYTAMLNIY-----------------GSG------------------GNV 449
           +     PD +SY  MLN Y                 G G                  G +
Sbjct: 352 MKGQ-NPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGML 410

Query: 450 DNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCL 509
           D A+ +F EM + GV  NV+  T +I  L +  ++DD +  F   ID+GV PD     CL
Sbjct: 411 DKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCL 470

Query: 510 L 510
           +
Sbjct: 471 I 471



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 146/290 (50%), Gaps = 2/290 (0%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           FN +  Q + P +  ++ +       G   +  ++L +E+++N + LD + +S+II    
Sbjct: 452 FNQMIDQGVAPDKYAYHCLIQGFCTHGSLLK-AKELISEIMNNGMHLDIVLFSSIINNLC 510

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
           +     +A   F+     GL P  V YS ++D Y   GK+E+ L +++  V++G +P+ +
Sbjct: 511 KLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDV 570

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
            +  L   + + G  D    + +EM   G++P+ ++YN +++ + +AG+   A+  F EM
Sbjct: 571 VYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEM 630

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
            ESG+  ++ T + +++   K R   +A+ L++ +R     +D I  NT++        V
Sbjct: 631 TESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRV 690

Query: 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           EEA+ LF  +  S    P   +Y+ M+      G V+ A ++F  M   G
Sbjct: 691 EEAKDLFASISRSGLV-PCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAG 739



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/391 (21%), Positives = 177/391 (45%), Gaps = 40/391 (10%)

Query: 139 EAFLRAITE---IPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMK 195
           EAFLR +     +P+  T  N +   +S   W+++   F  ++ Q++ P + + +N+ M 
Sbjct: 274 EAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILP-DVVTFNMLMG 332

Query: 196 SL-RFGRQFQL----------------------------------IEQLANEMVSNEIEL 220
           SL ++G+  +                                   +  L + M+ + I  
Sbjct: 333 SLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAP 392

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
              T++ +I     C + D+A+  F  M   G+ P+ +TY+ ++    + GK+++ +  +
Sbjct: 393 VICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKF 452

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
            + +  G  PD  A+  L + F   G     + ++ E+ + G+  ++V++++++  + K 
Sbjct: 453 NQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVLFSSIINNLCKL 512

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G+   A+++FD  V  GL P     + L+  Y      + AL +++ M       + ++Y
Sbjct: 513 GRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVY 572

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
            TL+N    IG ++E   LF +M L    KP    Y  +++     G    A   F EM+
Sbjct: 573 GTLVNGYCKIGRIDEGLSLFREM-LQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMT 631

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           E G+A+N    + +++ L K R  D+ + +F
Sbjct: 632 ESGIAMNKCTYSIVLRGLFKNRCFDEAIFLF 662



 Score = 92.4 bits (228), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 147/342 (42%), Gaps = 12/342 (3%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           K+   FN ++   + P    +  V     R G+    +E+  N+M+   +  D   Y  +
Sbjct: 412 KAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKF-NQMIDQGVAPDKYAYHCL 470

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
           I          +A E    +   G+  D V +S+I++   K G+V +  ++++  V  G 
Sbjct: 471 IQGFCTHGSLLKAKELISEIMNNGMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVGL 530

Query: 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348
            P  + +S+L   +   G  +    V   M S G++PN VVY TL+    K G+     S
Sbjct: 531 HPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLS 590

Query: 349 LFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL---- 404
           LF EM++ G+ P       +I    +A     A   +  M E+   M+   Y+ +L    
Sbjct: 591 LFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLF 650

Query: 405 -NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
            N C D     EA  LF++++  +  K D  +   M+        V+ A +LF  +S  G
Sbjct: 651 KNRCFD-----EAIFLFKELRAMNV-KIDIITLNTMIAGMFQTRRVEEAKDLFASISRSG 704

Query: 464 VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRL 505
           +   V+  + +I  L K   +++   +F    + G +PD RL
Sbjct: 705 LVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRL 746



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/236 (19%), Positives = 109/236 (46%), Gaps = 8/236 (3%)

Query: 177 IKSQNLFPMET--------IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           + +QN+F +          + Y++ M       + +   ++ + MVS  IE +++ Y T+
Sbjct: 516 MDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTL 575

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
           +    +    DE +  F  M + G+ P  + Y+ I+D   ++G+       +     SG 
Sbjct: 576 VNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGI 635

Query: 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348
             +   +S++ +   ++  +D   ++ +E++++ V+ +++  NT++  M +  +   A+ 
Sbjct: 636 AMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKD 695

Query: 349 LFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
           LF  +  SGL P   T + +I    K    ++A +++  M+      D  L N ++
Sbjct: 696 LFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVV 751



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 90/183 (49%), Gaps = 2/183 (1%)

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382
           + P    Y  L++   +A +P LA + F +++ +GL  D      L+K + +A+   +AL
Sbjct: 107 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEAL 166

Query: 383 E-LWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM-KLSDYCKPDNYSYTAML 440
           + L  R  E     D   Y+ LL    D G   +A+ L   M +    C PD  +Y  ++
Sbjct: 167 DILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYNTVI 226

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
           + +   G+V+ A +LF+EM + G+  + +  + ++  L KAR +D         +++GV 
Sbjct: 227 DGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVL 286

Query: 501 PDD 503
           P++
Sbjct: 287 PNN 289



 Score = 47.0 bits (110), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 39/187 (20%), Positives = 84/187 (44%), Gaps = 2/187 (1%)

Query: 187 TIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           TI YN+ +  L   GR      +  +EM  + I ++  TYS ++    +   FDEAI  F
Sbjct: 604 TILYNIIIDGLFEAGRTVPAKVKF-HEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLF 662

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           + +    +  D +T + ++    ++ +VEE   L+     SG  P  + +S++     + 
Sbjct: 663 KELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKE 722

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G  +    +   M++ G +P+  + N ++  + K  +   A +   ++ E   + +  T 
Sbjct: 723 GLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTT 782

Query: 366 TALIKIY 372
             L+ ++
Sbjct: 783 MLLVDLF 789


>gi|356540349|ref|XP_003538652.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Glycine max]
          Length = 1024

 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 88/316 (27%), Positives = 146/316 (46%), Gaps = 17/316 (5%)

Query: 203 FQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSA 262
            +L E+  +EM+   + L+ +  S    C      FD+A E    M   G +PD+ TYS 
Sbjct: 399 LELAEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDKAFEIICEMMSKGFVPDDSTYSK 458

Query: 263 ILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG 322
           ++     + KVE+   L+E    +G  P    +++L   F ++G     R    EM    
Sbjct: 459 VIGFLCDASKVEKAFLLFEEMKKNGIVPSVYTYTILIDSFCKAGLIQQARNWFDEMLRDN 518

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382
             PN+V Y +L+ A  KA K   A  LF+ M+  G  P+  T TALI  + KA     A 
Sbjct: 519 CTPNVVTYTSLIHAYLKARKVFDANKLFEMMLLEGSKPNVVTYTALIDGHCKAGQIDKAC 578

Query: 383 ELWERMRENKWPMD----------------FILYNTLLNMCADIGLVEEAERLFEDMKLS 426
           +++ RM+ +    D                 I Y  L++       VEEA  L + M ++
Sbjct: 579 QIYARMQGDIESSDIDMYFKLDDNDCETPNIITYGALVDGLCKANRVEEAHELLDTMSVN 638

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
             C+P+   Y A+++ +   G ++NA E+F +MSE G   N+   + LI  L K +R+D 
Sbjct: 639 G-CEPNQIVYDALIDGFCKTGKLENAQEVFVKMSERGYCPNLYTYSSLINSLFKEKRLDL 697

Query: 487 LVRVFGVSIDRGVKPD 502
           +++V    ++    P+
Sbjct: 698 VLKVLSKMLENSCTPN 713



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 89/323 (27%), Positives = 147/323 (45%), Gaps = 37/323 (11%)

Query: 216 NEIELDNI-TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVE 274
           N+ E  NI TY  ++    + N  +EA E  + M   G  P+++ Y A++D + K+GK+E
Sbjct: 602 NDCETPNIITYGALVDGLCKANRVEEAHELLDTMSVNGCEPNQIVYDALIDGFCKTGKLE 661

Query: 275 EVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLL 334
               ++ +    G+ P+   +S L     +    D +  VL +M      PN+V+Y  ++
Sbjct: 662 NAQEVFVKMSERGYCPNLYTYSSLINSLFKEKRLDLVLKVLSKMLENSCTPNVVIYTDMI 721

Query: 335 EAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWP 394
           + + K GK   A  L  +M E G  P+  T TA+I  +GK    +  LEL+  M      
Sbjct: 722 DGLCKVGKTEEAYRLMLKMEEVGCYPNVITYTAMIDGFGKIGKIEQCLELYRDMCSKGCA 781

Query: 395 MDFILYNTLLNMCADIGLVEEAERLFEDMK-------LSDYCK----------------- 430
            +FI Y  L+N C   GL++EA RL ++MK       +S Y K                 
Sbjct: 782 PNFITYRVLINHCCSTGLLDEAHRLLDEMKQTYWPRHISSYRKIIEGFNREFITSIGLLD 841

Query: 431 --------PDNYSYTAMLNIYGSGGNVDNAIELFEEMS---ELGVAINVMGCTCLIQCLG 479
                   P    Y  +++ +   G ++ A+ L EE+S    L VA N    T LI+ L 
Sbjct: 842 ELSENESVPVESLYRILIDNFIKAGRLEGALNLLEEISSSPSLAVA-NKYLYTSLIESLS 900

Query: 480 KARRIDDLVRVFGVSIDRGVKPD 502
            A ++D    ++   I++ V P+
Sbjct: 901 HASKVDKAFELYASMINKNVVPE 923



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 148/361 (40%), Gaps = 57/361 (15%)

Query: 195 KSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLM 254
           K+ R G    L+E+        E   D + Y+ +++     +LF EA++  +RM     +
Sbjct: 252 KAGRCGDALSLLEK-------EEFVPDTVFYNRMVSGLCEASLFQEAMDILDRMRSISCI 304

Query: 255 PDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYV 314
           P+ VTY  +L      G++     +    +  G  P+   F+ L   + +S DY     +
Sbjct: 305 PNVVTYRILLSGCLGKGQLGRCKRILSMMMTEGCYPNREMFNSLVHAYCKSRDYSYAYKL 364

Query: 315 LQEMKSLGVQPNLVVYNT---------------LLE--------------AMGKAGKPGL 345
            ++M   G QP  ++YN                LLE               + K      
Sbjct: 365 FKKMIKCGCQPGYLLYNIFIGSICSNEELPGSDLLELAEKAYSEMLDLGVVLNKVNVSNF 424

Query: 346 ARSL-----FD-------EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKW 393
           AR L     FD       EM+  G  PD+ T + +I     A   + A  L+E M++N  
Sbjct: 425 ARCLCGAGKFDKAFEIICEMMSKGFVPDDSTYSKVIGFLCDASKVEKAFLLFEEMKKNGI 484

Query: 394 PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAI 453
                 Y  L++     GL+++A   F++M L D C P+  +YT++++ Y     V +A 
Sbjct: 485 VPSVYTYTILIDSFCKAGLIQQARNWFDEM-LRDNCTPNVVTYTSLIHAYLKARKVFDAN 543

Query: 454 ELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFG--------VSIDRGVKPDDRL 505
           +LFE M   G   NV+  T LI    KA +ID   +++           ID   K DD  
Sbjct: 544 KLFEMMLLEGSKPNVVTYTALIDGHCKAGQIDKACQIYARMQGDIESSDIDMYFKLDDND 603

Query: 506 C 506
           C
Sbjct: 604 C 604



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 81/405 (20%), Positives = 157/405 (38%), Gaps = 86/405 (21%)

Query: 160 ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSL--------RFGRQFQLIEQLAN 211
           ++N +K  +    FF W   Q  +    + YN  ++ L        R   +F +      
Sbjct: 106 VMNLVKHPEFCVEFFLWASRQIGYSHTPVVYNALIELLCCNAVNNDRVSHKFLM------ 159

Query: 212 EMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG 271
           ++  ++ EL     + +I    R  +++ A+E   R+   G      TY+A++ V+ ++ 
Sbjct: 160 QIRDDDRELLRKLLNFLIQKCCRNGMWNVALEELGRLKDFGYKASPTTYNALIQVFLRAD 219

Query: 272 KVEEVLSLYERGVASGWKPDPIAFSVLGKMF---GESGDY-----------DGIRY---- 313
           K++    ++     SG++ D              G  GD            D + Y    
Sbjct: 220 KLDTAFLVHREMSNSGFRMDGCTLGCFAYSLCKAGRCGDALSLLEKEEFVPDTVFYNRMV 279

Query: 314 --------------VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
                         +L  M+S+   PN+V Y  LL      G+ G  + +   M+  G  
Sbjct: 280 SGLCEASLFQEAMDILDRMRSISCIPNVVTYRILLSGCLGKGQLGRCKRILSMMMTEGCY 339

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL-NMCAD-----IGLV 413
           P+ +   +L+  Y K+R    A +L+++M +      ++LYN  + ++C++       L+
Sbjct: 340 PNREMFNSLVHAYCKSRDYSYAYKLFKKMIKCGCQPGYLLYNIFIGSICSNEELPGSDLL 399

Query: 414 EEAERLFEDM----------KLSDYCK------------------------PDNYSYTAM 439
           E AE+ + +M           +S++ +                        PD+ +Y+ +
Sbjct: 400 ELAEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDKAFEIICEMMSKGFVPDDSTYSKV 459

Query: 440 LNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484
           +        V+ A  LFEEM + G+  +V   T LI    KA  I
Sbjct: 460 IGFLCDASKVEKAFLLFEEMKKNGIVPSVYTYTILIDSFCKAGLI 504



 Score = 45.1 bits (105), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 42/200 (21%), Positives = 82/200 (41%), Gaps = 41/200 (20%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYE- 281
           ITY+ +I    +    ++ +E +  M   G  P+ +TY  +++    +G ++E   L + 
Sbjct: 750 ITYTAMIDGFGKIGKIEQCLELYRDMCSKGCAPNFITYRVLINHCCSTGLLDEAHRLLDE 809

Query: 282 -------------RGVASGWKPDPIA-------------------FSVLGKMFGESGDYD 309
                        R +  G+  + I                    + +L   F ++G  +
Sbjct: 810 MKQTYWPRHISSYRKIIEGFNREFITSIGLLDELSENESVPVESLYRILIDNFIKAGRLE 869

Query: 310 GIRYVLQEMKSLGVQPNLVV-----YNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
           G   +L+E+ S    P+L V     Y +L+E++  A K   A  L+  M+   + P+  T
Sbjct: 870 GALNLLEEISS---SPSLAVANKYLYTSLIESLSHASKVDKAFELYASMINKNVVPELST 926

Query: 365 LTALIKIYGKARWAKDALEL 384
              LIK   +    ++AL+L
Sbjct: 927 FVHLIKGLTRVGKWQEALQL 946


>gi|302143554|emb|CBI22115.3| unnamed protein product [Vitis vinifera]
          Length = 765

 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 110/473 (23%), Positives = 204/473 (43%), Gaps = 19/473 (4%)

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
           LD  TY  +I    +    D A + F+ M +  L P  + +++++D   K+G+++  + +
Sbjct: 230 LDGSTYELMIPSLAKSGRLDAAFKLFQEMKEKNLRPSFLVFASLVDSMGKAGRLDTSMKV 289

Query: 280 YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
           Y      G +P    +  L + F ++G  +    +  EMK  G +PN  +Y  ++E+  K
Sbjct: 290 YMEMQGFGLRPSATMYVSLIESFVKAGKLETALRIWDEMKKAGFRPNYGLYTMVVESHAK 349

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
           +GK   A S+F +M ++G  P   T + L++++  +     A++L+  M           
Sbjct: 350 SGKLETAMSVFSDMEKAGFLPTPSTYSCLLEMHSASGQVDSAMKLYNSMTNAGLRPGLST 409

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           Y  LL + A+  LV+ A ++  +MK   +    + S + +L +Y   G+VD A+     M
Sbjct: 410 YTALLTLLANKKLVDVAAKVLLEMKAMGFSV--DVSASDVLMVYIKDGSVDLALRWLRFM 467

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETS 519
              G+  N      L +   K    +    +    ++   K D  L   +L+ +  C+  
Sbjct: 468 GSSGIRTNNFIIRQLFESCMKNGLYESAKPLLETYVNSAAKVDLILYTSILAHLVRCQEE 527

Query: 520 EDVGKVITCLQQANPKLVAFLNLI-----EDNSTGFENIKEEFRNVIKDTEVDARRPFCN 574
           ++   ++  L     K   F+  +     +        ++E F++V  + E  A R F N
Sbjct: 528 QNERHLMLILSATKHKAHTFMCGLFTGPEQRKQPVLSFVREFFQSVDYELEEGAARYFVN 587

Query: 575 CLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDE---WSLDVRSLSVGAAQTALEE 631
            L++         RA  +  +     L+P       D+   WSLDVR+LSVGAA  A+  
Sbjct: 588 VLLNYLVLMGQINRARCVWKVAYENKLFP--KAIVFDQHIAWSLDVRNLSVGAALVAVVH 645

Query: 632 WMWTLAKIVLREEVLPQLFLAETGTGTHKFSQGLATAFASHVNKLAAPFRQSE 684
            +    K +L   V+P+     TG         L    A  +N + +PF  S+
Sbjct: 646 TLHRFRKRMLYYGVVPRRIKLVTGP-------TLKIVVAQMLNSVESPFEVSK 691



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 144/288 (50%), Gaps = 13/288 (4%)

Query: 221 DNITYSTIITCAK------RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVE 274
           DN   S++I C +      +    + A   F+++  +G   D  TY++++ ++   G   
Sbjct: 155 DNNGVSSVIACNQVVRDLAKAEKLEVAFCCFKKVQDSGCKIDTATYNSLITLFLNKGLPY 214

Query: 275 EVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLL 334
           +   +YE   A+G   D   + ++     +SG  D    + QEMK   ++P+ +V+ +L+
Sbjct: 215 KAFEVYESMEAAGCLLDGSTYELMIPSLAKSGRLDAAFKLFQEMKEKNLRPSFLVFASLV 274

Query: 335 EAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWP 394
           ++MGKAG+   +  ++ EM   GL P      +LI+ + KA   + AL +W+ M++  + 
Sbjct: 275 DSMGKAGRLDTSMKVYMEMQGFGLRPSATMYVSLIESFVKAGKLETALRIWDEMKKAGFR 334

Query: 395 MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIE 454
            ++ LY  ++   A  G +E A  +F DM+ + +  P   +Y+ +L ++ + G VD+A++
Sbjct: 335 PNYGLYTMVVESHAKSGKLETAMSVFSDMEKAGFL-PTPSTYSCLLEMHSASGQVDSAMK 393

Query: 455 LFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF------GVSID 496
           L+  M+  G+   +   T L+  L   + +D   +V       G S+D
Sbjct: 394 LYNSMTNAGLRPGLSTYTALLTLLANKKLVDVAAKVLLEMKAMGFSVD 441



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 121/274 (44%), Gaps = 20/274 (7%)

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           +++   KA   + A   +++++++   +D   YN+L+ +  + GL  +A  ++E M+ + 
Sbjct: 168 VVRDLAKAEKLEVAFCCFKKVQDSGCKIDTATYNSLITLFLNKGLPYKAFEVYESMEAAG 227

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
            C  D  +Y  M+      G +D A +LF+EM E  +  + +    L+  +GKA R+D  
Sbjct: 228 -CLLDGSTYELMIPSLAKSGRLDAAFKLFQEMKEKNLRPSFLVFASLVDSMGKAGRLDTS 286

Query: 488 VRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQ--------QANPKLVAF 539
           ++V+      G++P   +       VSL E+    GK+ T L+           P    +
Sbjct: 287 MKVYMEMQGFGLRPSATM------YVSLIESFVKAGKLETALRIWDEMKKAGFRPNYGLY 340

Query: 540 LNLIEDNSTGFENIKEEFRNVIKDTEVDARRP---FCNCLIDICRNRNLNERAHELLYLG 596
             ++E ++   +   E   +V  D E     P     +CL+++       + A +L    
Sbjct: 341 TMVVESHAKSGK--LETAMSVFSDMEKAGFLPTPSTYSCLLEMHSASGQVDSAMKLYNSM 398

Query: 597 TLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALE 630
           T  GL PGL   T     L  + L   AA+  LE
Sbjct: 399 TNAGLRPGLSTYTALLTLLANKKLVDVAAKVLLE 432


>gi|302784708|ref|XP_002974126.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
 gi|300158458|gb|EFJ25081.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
          Length = 538

 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 92/366 (25%), Positives = 179/366 (48%), Gaps = 11/366 (3%)

Query: 159 LILNSLKFWQKSYF---FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVS 215
           ++LN L    K+      F  +K     P   I Y   ++ L    +     ++  E  S
Sbjct: 128 ILLNGLCRSNKTKLAREVFQEMKRNGCKP-NPITYGTLIQHLSRAGEIDEALRVMIEQRS 186

Query: 216 NEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEE 275
            E+  D IT +TI+    + +  D+A+++ E M + G+ P+EVTYS ++  + + G+++ 
Sbjct: 187 LELPTDVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFRQHGELDR 246

Query: 276 VLSLYERGVA-SGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLL 334
           V+  +E   A  G   +  A+        ++G  D  R  ++E++  GV P++V Y+ L+
Sbjct: 247 VIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVVTYSMLI 306

Query: 335 EAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWP 394
               +AG+   +  L ++M  +G+ PD  T + LI +  K R  +DA  L E M     P
Sbjct: 307 NTFARAGQFDASLELLEDMRRNGVKPDVVTYSTLINVLCKERKFQDAFRLLELMEAAGSP 366

Query: 395 MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIE 454
            + + YN++++     G ++E  R++E M L   C PD  +Y+ ++N     G +D+A++
Sbjct: 367 PNVVTYNSVMDGLCKSGKMDEVHRVYE-MMLKSRCSPDVVTYSIIMNGLSKAGMLDSAVK 425

Query: 455 LFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF-GVSIDRGVKPDDRLCGCLLSVV 513
           LFE +       +    + +I  L +A ++++   ++ G+ +       D +C  L  +V
Sbjct: 426 LFELIKSSREGPDAAAYSMVITSLCRAGKLEEACGMYHGMEV---TVAGDNICRALAGLV 482

Query: 514 -SLCET 518
            +LC+ 
Sbjct: 483 AALCDA 488



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/336 (22%), Positives = 135/336 (40%), Gaps = 36/336 (10%)

Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS 261
           +F  + +L   + S  +     TY  ++       + ++A+E    +      P    Y+
Sbjct: 34  KFSEVVRLFTLLASRGVVYGETTYKLVVDGLCGAGMANQALELVRELSGV-YTPTVFIYN 92

Query: 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
            I+    ++ +V +   + E+ V     P+   +++L      S      R V QEMK  
Sbjct: 93  GIITGLCRASRVMDAYKVLEKMVEESIVPNVFTYTILLNGLCRSNKTKLAREVFQEMKRN 152

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
           G +PN + Y TL++ + +AG+   A  +  E     L  D  T T ++    KA    DA
Sbjct: 153 GCKPNPITYGTLIQHLSRAGEIDEALRVMIEQRSLELPTDVITCTTIVGGLCKASRLDDA 212

Query: 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK---------------LS 426
           L+  E MR+     + + Y+ L++     G ++   R FE+ K               L 
Sbjct: 213 LKFMEEMRQMGVRPNEVTYSNLVHGFRQHGELDRVIRFFEEEKARKGGSLEAAAYPGYLD 272

Query: 427 DYCK--------------------PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
             CK                    PD  +Y+ ++N +   G  D ++EL E+M   GV  
Sbjct: 273 ALCKAGYLDRARKSVEELRQSGVVPDVVTYSMLINTFARAGQFDASLELLEDMRRNGVKP 332

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           +V+  + LI  L K R+  D  R+  +    G  P+
Sbjct: 333 DVVTYSTLINVLCKERKFQDAFRLLELMEAAGSPPN 368


>gi|15240249|ref|NP_200948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171473|sp|Q9FLJ4.1|PP440_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g61400
 gi|9757861|dbj|BAB08495.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010079|gb|AED97462.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 654

 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 99/368 (26%), Positives = 178/368 (48%), Gaps = 7/368 (1%)

Query: 147 EIPHQPTRENALLILNSL---KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQF 203
           E+   P  +  L ILN L   + +   +  +  + S+ L P   I++ +     + G  +
Sbjct: 157 EMKCSPDSKACLSILNGLVRRRRFDSVWVDYQLMISRGLVPDVHIYFVLFQCCFKQGL-Y 215

Query: 204 QLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAI 263
              E+L +EM S  I+ +   Y+  I    R N  +EA + FE M K G++P+  TYSA+
Sbjct: 216 SKKEKLLDEMTSLGIKPNVYIYTIYILDLCRDNKMEEAEKMFELMKKHGVLPNLYTYSAM 275

Query: 264 LDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGV 323
           +D Y K+G V +   LY+  + +   P+ + F  L   F ++ +    R +   M   GV
Sbjct: 276 IDGYCKTGNVRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVTARSLFVHMVKFGV 335

Query: 324 QPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALE 383
            PNL VYN L+    K+G    A  L  EM    L+PD  T T LI          +A  
Sbjct: 336 DPNLYVYNCLIHGHCKSGNMLEAVGLLSEMESLNLSPDVFTYTILINGLCIEDQVAEANR 395

Query: 384 LWERMRENKWPMDFILYNTLLN-MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNI 442
           L+++M+  +       YN+L++  C +  + E+A  L  +M  S   +P+  +++ +++ 
Sbjct: 396 LFQKMKNERIFPSSATYNSLIHGYCKEYNM-EQALDLCSEMTASGV-EPNIITFSTLIDG 453

Query: 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           Y +  ++  A+ L+ EM+  G+  +V+  T LI    K   + + +R++   ++ G+ P+
Sbjct: 454 YCNVRDIKAAMGLYFEMTIKGIVPDVVTYTALIDAHFKEANMKEALRLYSDMLEAGIHPN 513

Query: 503 DRLCGCLL 510
           D    CL+
Sbjct: 514 DHTFACLV 521



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 120/261 (45%), Gaps = 1/261 (0%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L +EM S  +  D  TY+ +I      +   EA   F++M    + P   TY++++  Y 
Sbjct: 361 LLSEMESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKMKNERIFPSSATYNSLIHGYC 420

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           K   +E+ L L     ASG +P+ I FS L   +    D      +  EM   G+ P++V
Sbjct: 421 KEYNMEQALDLCSEMTASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVV 480

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            Y  L++A  K      A  L+ +M+E+G+ P++ T   L+  + K      A++ ++  
Sbjct: 481 TYTALIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSVAIDFYQEN 540

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
            + +   + + +  L+      G +  A R F DM+ S    PD  SY +ML  +     
Sbjct: 541 NQQRSCWNHVGFTCLIEGLCQNGYILRASRFFSDMR-SCGITPDICSYVSMLKGHLQEKR 599

Query: 449 VDNAIELFEEMSELGVAINVM 469
           + + + L  +M + G+  N++
Sbjct: 600 ITDTMMLQCDMIKTGILPNLL 620


>gi|79317869|ref|NP_001031033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75178969|sp|Q9LPX2.1|PPR39_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12775, mitochondrial; Flags: Precursor
 gi|8698724|gb|AAF78482.1|AC012187_2 Contains similarity to an unknown protein F16M19.7 gi|6598837 from
           Arabidopsis thaliana BAC F16M19 gb|AC010795 and contains
           multiple PPR PF|01535 repeats. EST gb|AI999079 comes
           from this gene [Arabidopsis thaliana]
 gi|332190806|gb|AEE28927.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 644

 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 99/373 (26%), Positives = 168/373 (45%), Gaps = 11/373 (2%)

Query: 145 ITEIPHQPTRENALLILNSLKFWQK---SYFFFNWIKSQNLFPMETIF---YNVTMKSLR 198
           + E+ H+PT      ++N L    K   +    + +      P E  +    NV  KS  
Sbjct: 184 MVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKS-- 241

Query: 199 FGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEV 258
              Q  L  +L  +M    I+LD + YS II    +    D A   F  M   G   D +
Sbjct: 242 --GQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADII 299

Query: 259 TYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEM 318
           TY+ ++  +  +G+ ++   L    +     P+ + FSVL   F + G       +L+EM
Sbjct: 300 TYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEM 359

Query: 319 KSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWA 378
              G+ PN + YN+L++   K  +   A  + D M+  G  PD  T   LI  Y KA   
Sbjct: 360 MQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRI 419

Query: 379 KDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTA 438
            D LEL+  M       + + YNTL+      G +E A++LF++M +S   +PD  SY  
Sbjct: 420 DDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEM-VSRRVRPDIVSYKI 478

Query: 439 MLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRG 498
           +L+     G ++ A+E+F ++ +  + +++     +I  +  A ++DD   +F     +G
Sbjct: 479 LLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKG 538

Query: 499 VKPDDRLCGCLLS 511
           VK D R    ++S
Sbjct: 539 VKLDARAYNIMIS 551



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 150/332 (45%), Gaps = 5/332 (1%)

Query: 172 FFFNWIKSQNLFPMETIF-YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIIT 230
            F + I+S+   P+ T+  +N    ++   +Q++L+  L  +M S  I     T S +I 
Sbjct: 75  LFRDMIQSR---PLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMIN 131

Query: 231 CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
           C  RC     A     ++ K G  PD V ++ +L+      +V E L L +R V  G KP
Sbjct: 132 CFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKP 191

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
             I  + L      +G       ++  M   G QPN V Y  +L  M K+G+  LA  L 
Sbjct: 192 TLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELL 251

Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
            +M E  +  D    + +I    K     +A  L+  M    +  D I YNTL+    + 
Sbjct: 252 RKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNA 311

Query: 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG 470
           G  ++  +L  DM +     P+  +++ +++ +   G +  A +L +EM + G+A N + 
Sbjct: 312 GRWDDGAKLLRDM-IKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTIT 370

Query: 471 CTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
              LI    K  R+++ +++  + I +G  PD
Sbjct: 371 YNSLIDGFCKENRLEEAIQMVDLMISKGCDPD 402



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 125/262 (47%), Gaps = 1/262 (0%)

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
           +QL  EM+   I  + ITY+++I    + N  +EAI+  + M   G  PD +T++ +++ 
Sbjct: 353 DQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILING 412

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
           Y K+ ++++ L L+      G   + + ++ L + F +SG  +  + + QEM S  V+P+
Sbjct: 413 YCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPD 472

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
           +V Y  LL+ +   G+   A  +F ++ +S +  D      +I     A    DA +L+ 
Sbjct: 473 IVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFC 532

Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
            +      +D   YN +++       + +A+ LF  M    +  PD  +Y  ++  +   
Sbjct: 533 SLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGH-APDELTYNILIRAHLGD 591

Query: 447 GNVDNAIELFEEMSELGVAINV 468
            +   A EL EEM   G   +V
Sbjct: 592 DDATTAAELIEEMKSSGFPADV 613


>gi|255661130|gb|ACU25734.1| pentatricopeptide repeat-containing protein [Verbena orcuttiana]
          Length = 426

 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 88/283 (31%), Positives = 144/283 (50%), Gaps = 7/283 (2%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D  TYST+IT   +  LFD A+ W ++M +  +  D V YS ++++  K     + +S++
Sbjct: 8   DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
            R   SG+ PD +A++ +  +FG++  +   R ++ EM++ GV PN   Y+TLL    + 
Sbjct: 68  SRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVEN 127

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
            K   A S+F EM E     D  T   +I +YG+   AK+A +L+  MR+     + + Y
Sbjct: 128 KKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSY 187

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           NTLL +  D  L  EA  LF  M+  +    +  +Y +M+ IYG       A  L +EM 
Sbjct: 188 NTLLRVYGDAELFGEAIHLFRLMQRKN-IDQNVVTYNSMMMIYGKTLEHVKANNLIQEMQ 246

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVF------GVSIDR 497
             G+  N +  + +I   GK  ++D    +F      GV ID+
Sbjct: 247 NRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQ 289



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 82/366 (22%), Positives = 168/366 (45%), Gaps = 6/366 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K     P + + YN  +      + F+    L +EM +  +  +  +YS
Sbjct: 60  YSKAISIFSRLKRSGFTP-DLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYS 118

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY + G  +E   L+      
Sbjct: 119 TLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 178

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   +  N+V YN+++   GK  +   A
Sbjct: 179 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIDQNVVTYNSMMMIYGKTLEHVKA 238

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R +   +D +LY T++  
Sbjct: 239 NNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVA 298

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K     +PDN      ++I    G ++ A  +F +  + G   
Sbjct: 299 YERAGLVAHAKRLLHELK-----RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVK 353

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           ++     +I    K ++  ++V VF      G  PD  +   +L+        +    V 
Sbjct: 354 DITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALILNAYGKLHEFDKANDVY 413

Query: 527 TCLQQA 532
             +Q+ 
Sbjct: 414 MEMQEV 419



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/271 (23%), Positives = 137/271 (50%), Gaps = 1/271 (0%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
            +M  + +  D + YS +I  +++   + +AI  F R+ ++G  PD V Y+A+++V+ K+
Sbjct: 33  QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKA 92

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
               E  SL      +G  P+  ++S L  M+ E+  +     V  EM+ +    +L   
Sbjct: 93  KLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTC 152

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
           N +++  G+ G    A  LF  M + G+ P+  +   L+++YG A    +A+ L+  M+ 
Sbjct: 153 NIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR 212

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
                + + YN+++ +        +A  L ++M+ +   +P++ +Y+ +++I+G  G +D
Sbjct: 213 KNIDQNVVTYNSMMMIYGKTLEHVKANNLIQEMQ-NRGIEPNSITYSTIISIWGKVGKLD 271

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
            A  LF+++   GV I+ +    +I    +A
Sbjct: 272 RAAMLFQKLRSSGVDIDQVLYQTMIVAYERA 302



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 129/264 (48%), Gaps = 7/264 (2%)

Query: 252 GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGI 311
            L PD  TYS ++  + K G  +  LS  ++        D + +S L ++  +  DY   
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 312 RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371
             +   +K  G  P+LV YN ++   GKA     ARSL  EM  +G+TP+  + + L+ +
Sbjct: 64  ISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTM 123

Query: 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
           Y + +   +AL ++  MRE K  +D    N ++++   +G+ +EA++LF  M+     +P
Sbjct: 124 YVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG-IEP 182

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKAR---RIDDLV 488
           +  SY  +L +YG       AI LF  M    +  NV+    ++   GK     + ++L+
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIDQNVVTYNSMMMIYGKTLEHVKANNLI 242

Query: 489 RVFGVSIDRGVKPDDRLCGCLLSV 512
           +      +RG++P+      ++S+
Sbjct: 243 QEMQ---NRGIEPNSITYSTIISI 263



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/244 (21%), Positives = 110/244 (45%), Gaps = 9/244 (3%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIE- 207
           P+  +    L +    + + ++   F  ++ +N+     + YN  M  + +G+  + ++ 
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNI-DQNVVTYNSMM--MIYGKTLEHVKA 238

Query: 208 -QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
             L  EM +  IE ++ITYSTII+   +    D A   F+++  +G+  D+V Y  ++  
Sbjct: 239 NNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVA 298

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
           Y ++G V       +R +    +PD I   +   +   +G  +   +V ++    G   +
Sbjct: 299 YERAGLVAHA----KRLLHELKRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKD 354

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
           + V+  ++    K  K G    +FD+M   G  PD   +  ++  YGK      A +++ 
Sbjct: 355 ITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALILNAYGKLHEFDKANDVYM 414

Query: 387 RMRE 390
            M+E
Sbjct: 415 EMQE 418



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 87/191 (45%), Gaps = 3/191 (1%)

Query: 355 ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
           E  L+PD  T + LI  +GK      AL   ++M +++ P D +LY+ L+ +   +    
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
           +A  +F  +K S +  PD  +Y AM+N++G       A  L  EM   GV  N    + L
Sbjct: 62  KAISIFSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN- 533
           +    + ++  + + VF    +     D   C  ++ V      +++  K+   +++   
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180

Query: 534 -PKLVAFLNLI 543
            P +V++  L+
Sbjct: 181 EPNVVSYNTLL 191


>gi|356575482|ref|XP_003555869.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like [Glycine max]
          Length = 576

 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 91/383 (23%), Positives = 174/383 (45%), Gaps = 5/383 (1%)

Query: 152 PTRENALLILNSL---KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           PT +   L++ +       +K+   F  +++  L P   + YN  +  L  G      E+
Sbjct: 188 PTEDTYALLIKAYCISGLLEKAEAVFAEMRNYGL-PSSAVVYNAYINGLMKGGNSDKAEE 246

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           +   M  +  +    TY+ +I    +      A++ F  M      P+  TY+A+++ +A
Sbjct: 247 IFKRMKKDACKPTTETYTMLINLYGKAGKSFMALKLFHEMMSHDCKPNICTYTALVNAFA 306

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           + G  E+   ++E+   +G +PD  A++ L + +  +G   G   +   M+ +G +P+  
Sbjct: 307 REGLCEKAEEVFEQMQEAGLEPDVYAYNALMEAYSRAGYPYGAAEIFSLMQHMGCEPDRA 366

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            YN L++A GKAG    A ++F +M   G+TP  K+   L+  Y K        E+  +M
Sbjct: 367 SYNILVDAYGKAGFQDDAEAVFKDMKRVGITPTMKSHMVLLSAYSKMGSVNKCEEILNQM 426

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
            ++   +D  + N++LN+   +G   + E +   M+   Y   D  +Y  ++N YG  G 
Sbjct: 427 CKSGLKLDTYVLNSMLNLYGRLGQFGKMEEVLRVMEKGSYV-ADISTYNILINRYGQAGF 485

Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGC 508
           ++   +LF+ +   G+  +V+  T  I    K +     + +F   ID G  PD      
Sbjct: 486 IERMEDLFQLLPSKGLKPDVVTWTSRIGAYSKKKLYLKCLEIFEEMIDDGCYPDGGTAKV 545

Query: 509 LLSVVSLCETSEDVGKVITCLQQ 531
           LL+  S  + +E V  VI  + +
Sbjct: 546 LLAACSNEDQTEQVTTVIRTMHK 568



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 94/360 (26%), Positives = 159/360 (44%), Gaps = 6/360 (1%)

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           + ++   PD + Y+ +++ + +    +E  S Y + + +   P    +++L K +  SG 
Sbjct: 146 LLRSSFKPDVICYNLLIEAFGQKLLYKEAESTYLQLLEARCIPTEDTYALLIKAYCISGL 205

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
            +    V  EM++ G+  + VVYN  +  + K G    A  +F  M +    P  +T T 
Sbjct: 206 LEKAEAVFAEMRNYGLPSSAVVYNAYINGLMKGGNSDKAEEIFKRMKKDACKPTTETYTM 265

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           LI +YGKA  +  AL+L+  M  +    +   Y  L+N  A  GL E+AE +FE M+ + 
Sbjct: 266 LINLYGKAGKSFMALKLFHEMMSHDCKPNICTYTALVNAFAREGLCEKAEEVFEQMQEAG 325

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
             +PD Y+Y A++  Y   G    A E+F  M  +G   +      L+   GKA   DD 
Sbjct: 326 L-EPDVYAYNALMEAYSRAGYPYGAAEIFSLMQHMGCEPDRASYNILVDAYGKAGFQDDA 384

Query: 488 VRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNS 547
             VF      G+ P  +    LLS  S   +     +++  + ++  KL  ++     N 
Sbjct: 385 EAVFKDMKRVGITPTMKSHMVLLSAYSKMGSVNKCEEILNQMCKSGLKLDTYVLNSMLNL 444

Query: 548 TG----FENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYP 603
            G    F  ++E  R + K + V     + N LI+        ER  +L  L    GL P
Sbjct: 445 YGRLGQFGKMEEVLRVMEKGSYVADISTY-NILINRYGQAGFIERMEDLFQLLPSKGLKP 503



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 89/374 (23%), Positives = 158/374 (42%), Gaps = 38/374 (10%)

Query: 165 KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQ--FQLIEQLANEMVSNEIELDN 222
           K W        WI  ++ F  + I YN+ +++  FG++  ++  E    +++        
Sbjct: 133 KQWDSIISICRWILLRSSFKPDVICYNLLIEA--FGQKLLYKEAESTYLQLLEARCIPTE 190

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
            TY+ +I       L ++A   F  M   GL    V Y+A ++   K G  ++   +++R
Sbjct: 191 DTYALLIKAYCISGLLEKAEAVFAEMRNYGLPSSAVVYNAYINGLMKGGNSDKAEEIFKR 250

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
                 KP    +++L  ++G++G       +  EM S   +PN+  Y  L+ A  + G 
Sbjct: 251 MKKDACKPTTETYTMLINLYGKAGKSFMALKLFHEMMSHDCKPNICTYTALVNAFAREGL 310

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
              A  +F++M E+GL PD     AL++ Y +A +   A E++  M+      D   YN 
Sbjct: 311 CEKAEEVFEQMQEAGLEPDVYAYNALMEAYSRAGYPYGAAEIFSLMQHMGCEPDRASYNI 370

Query: 403 LLNMCADIGLVEEAERLFEDMK------------------------------LSDYCKP- 431
           L++     G  ++AE +F+DMK                              L+  CK  
Sbjct: 371 LVDAYGKAGFQDDAEAVFKDMKRVGITPTMKSHMVLLSAYSKMGSVNKCEEILNQMCKSG 430

Query: 432 ---DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLV 488
              D Y   +MLN+YG  G      E+   M +     ++     LI   G+A  I+ + 
Sbjct: 431 LKLDTYVLNSMLNLYGRLGQFGKMEEVLRVMEKGSYVADISTYNILINRYGQAGFIERME 490

Query: 489 RVFGVSIDRGVKPD 502
            +F +   +G+KPD
Sbjct: 491 DLFQLLPSKGLKPD 504


>gi|242075962|ref|XP_002447917.1| hypothetical protein SORBIDRAFT_06g017980 [Sorghum bicolor]
 gi|241939100|gb|EES12245.1| hypothetical protein SORBIDRAFT_06g017980 [Sorghum bicolor]
          Length = 550

 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 106/435 (24%), Positives = 196/435 (45%), Gaps = 26/435 (5%)

Query: 67  QLKPLSSTTLSPTKNDRTPLLSKPKS--------TWVNPTKPRRSVLSLQRQKRSTYSYN 118
           +L P + + L       +P LS P S        T +  +   R  L L  Q      Y 
Sbjct: 85  RLAPCAGSALRIFSALHSPPLSVPPSEQSYSHVITLLCRSGRHRDALKLFDQMTDQSGYL 144

Query: 119 PRVRDLKLFARKLNDCDNTE--EAFLRAITEIPH-----QPTRENALL--ILNSLKFWQK 169
           P   D   F+     C N    +A +  +T+        +P   N LL  ++   +    
Sbjct: 145 P---DAVFFSFVAGSCTNAGLLDAAVTLLTKASQFGRRIEPYAYNNLLNLLIARGRAQDA 201

Query: 170 SYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTII 229
              F +WI+   L+  +   +NV +K +     FQ   +L   M       D IT++ ++
Sbjct: 202 VALFESWIQ-DGLYSPDGWSFNVVIKGVCRVGNFQKALELVERMTEFGCSPDTITHNILV 260

Query: 230 TCAKRCNLFDEAIEWFERMYKTGL-MPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
               R    +   +   R+ + G+ MP+ VTY++++  Y K+G++E+ LS+Y   + SG 
Sbjct: 261 DGLCRAKQVNRGHDLLRRLQRDGVCMPNVVTYTSVISGYCKAGRMEDALSVYNDMLESGT 320

Query: 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348
           +P+ + ++VL   +G++ D +    + +++      P++V +++L++   + G+   A  
Sbjct: 321 RPNTVTYNVLINGYGKALDMESAVRMYRQLILRRCPPDVVTFSSLIDGYCRCGQLDDAMR 380

Query: 349 LFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER--MRENKWPMDFILYNTLLNM 406
           ++ EM +  + P+  T + +I    K   + +AL       MR +  P  FI YN ++++
Sbjct: 381 IWKEMGQHHIQPNVYTFSIIIHSLCKQNRSAEALGFLRELNMRADIAPQTFI-YNPVIDI 439

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               G VEEA  +  DM+    C PD Y+YT ++  +   G +  AI LF +M E G   
Sbjct: 440 LCKGGQVEEANLIVTDME-EKGCHPDKYTYTILIIGHCMKGRIPEAITLFHKMVETGCRP 498

Query: 467 NVMGCTCLIQCLGKA 481
           + +     I C+ KA
Sbjct: 499 DKITVNSFISCVLKA 513



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/303 (23%), Positives = 144/303 (47%), Gaps = 5/303 (1%)

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIEL-DNITYSTIITCAKRCNLFDEAI 242
           P E  + +V     R GR    + +L ++M      L D + +S +        L D A+
Sbjct: 109 PSEQSYSHVITLLCRSGRHRDAL-KLFDQMTDQSGYLPDAVFFSFVAGSCTNAGLLDAAV 167

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG-WKPDPIAFSVLGKM 301
               +  + G   +   Y+ +L++    G+ ++ ++L+E  +  G + PD  +F+V+ K 
Sbjct: 168 TLLTKASQFGRRIEPYAYNNLLNLLIARGRAQDAVALFESWIQDGLYSPDGWSFNVVIKG 227

Query: 302 FGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT-P 360
               G++     +++ M   G  P+ + +N L++ + +A +      L   +   G+  P
Sbjct: 228 VCRVGNFQKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNRGHDLLRRLQRDGVCMP 287

Query: 361 DEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLF 420
           +  T T++I  Y KA   +DAL ++  M E+    + + YN L+N       +E A R++
Sbjct: 288 NVVTYTSVISGYCKAGRMEDALSVYNDMLESGTRPNTVTYNVLINGYGKALDMESAVRMY 347

Query: 421 EDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK 480
             + L   C PD  +++++++ Y   G +D+A+ +++EM +  +  NV   + +I  L K
Sbjct: 348 RQLILRR-CPPDVVTFSSLIDGYCRCGQLDDAMRIWKEMGQHHIQPNVYTFSIIIHSLCK 406

Query: 481 ARR 483
             R
Sbjct: 407 QNR 409



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 119/250 (47%), Gaps = 2/250 (0%)

Query: 255 PDEVTYSAILDVYAKSGKVEEVLSLYERGV-ASGWKPDPIAFSVLGKMFGESGDYDGIRY 313
           P E +YS ++ +  +SG+  + L L+++    SG+ PD + FS +      +G  D    
Sbjct: 109 PSEQSYSHVITLLCRSGRHRDALKLFDQMTDQSGYLPDAVFFSFVAGSCTNAGLLDAAVT 168

Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL-TPDEKTLTALIKIY 372
           +L +    G +     YN LL  +   G+   A +LF+  ++ GL +PD  +   +IK  
Sbjct: 169 LLTKASQFGRRIEPYAYNNLLNLLIARGRAQDAVALFESWIQDGLYSPDGWSFNVVIKGV 228

Query: 373 GKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPD 432
            +    + ALEL ERM E     D I +N L++       V     L   ++    C P+
Sbjct: 229 CRVGNFQKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNRGHDLLRRLQRDGVCMPN 288

Query: 433 NYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFG 492
             +YT++++ Y   G +++A+ ++ +M E G   N +    LI   GKA  ++  VR++ 
Sbjct: 289 VVTYTSVISGYCKAGRMEDALSVYNDMLESGTRPNTVTYNVLINGYGKALDMESAVRMYR 348

Query: 493 VSIDRGVKPD 502
             I R   PD
Sbjct: 349 QLILRRCPPD 358



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 56/282 (19%), Positives = 135/282 (47%), Gaps = 4/282 (1%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMY-KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           +YS +IT   R     +A++ F++M  ++G +PD V +S +      +G ++  ++L  +
Sbjct: 113 SYSHVITLLCRSGRHRDALKLFDQMTDQSGYLPDAVFFSFVAGSCTNAGLLDAAVTLLTK 172

Query: 283 GVASGWKPDPIAFS-VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG 341
               G + +P A++ +L  +       D +      ++     P+   +N +++ + + G
Sbjct: 173 ASQFGRRIEPYAYNNLLNLLIARGRAQDAVALFESWIQDGLYSPDGWSFNVVIKGVCRVG 232

Query: 342 KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPM-DFILY 400
               A  L + M E G +PD  T   L+    +A+      +L  R++ +   M + + Y
Sbjct: 233 NFQKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNRGHDLLRRLQRDGVCMPNVVTY 292

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
            ++++     G +E+A  ++ DM L    +P+  +Y  ++N YG   ++++A+ ++ ++ 
Sbjct: 293 TSVISGYCKAGRMEDALSVYNDM-LESGTRPNTVTYNVLINGYGKALDMESAVRMYRQLI 351

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
                 +V+  + LI    +  ++DD +R++       ++P+
Sbjct: 352 LRRCPPDVVTFSSLIDGYCRCGQLDDAMRIWKEMGQHHIQPN 393



 Score = 46.2 bits (108), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 62/147 (42%), Gaps = 5/147 (3%)

Query: 151 QPTRENALLILNSLKFWQKSYFFFNWIKSQNL---FPMETIFYNVTMKSLRFGRQFQLIE 207
           QP      +I++SL    +S     +++  N+      +T  YN  +  L  G Q +   
Sbjct: 391 QPNVYTFSIIIHSLCKQNRSAEALGFLRELNMRADIAPQTFIYNPVIDILCKGGQVEEAN 450

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
            +  +M       D  TY+ +I          EAI  F +M +TG  PD++T ++ +   
Sbjct: 451 LIVTDMEEKGCHPDKYTYTILIIGHCMKGRIPEAITLFHKMVETGCRPDKITVNSFISCV 510

Query: 268 AKSGKVEEV--LSLYERGVASGWKPDP 292
            K+G   EV  + L   G AS  +  P
Sbjct: 511 LKAGMPNEVDQIMLIASGHASASQKVP 537


>gi|297834714|ref|XP_002885239.1| EMB1270 [Arabidopsis lyrata subsp. lyrata]
 gi|297331079|gb|EFH61498.1| EMB1270 [Arabidopsis lyrata subsp. lyrata]
          Length = 1429

 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 119/505 (23%), Positives = 223/505 (44%), Gaps = 45/505 (8%)

Query: 39  NISCNSKSSENVAAESPNPETKTLSLSEQLKPLSSTTLSPTKNDRTPLLSKPKSTWVNP- 97
           NIS +S      +  SP      LSL E     +ST   P  +  +P  +   + +V+  
Sbjct: 29  NISTSSTQKFTYSRASPAVRWPHLSLRETYDSRASTPSQPLSSPVSPTDTPDSAEFVDSI 88

Query: 98  -------TKPRRSVLSLQRQKRS--------TYSYNPRVRDL--KLFARKLNDCDNTEEA 140
                  TK   +V S +R+ +            +  RV+ L  K+ + K N        
Sbjct: 89  GSSEHQKTKDETAVASRRRRVKKMNKVALIKAKDWRERVKFLTDKILSLKPNQ------- 141

Query: 141 FLRAITEI-PHQPTRENALLILNSL--KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSL 197
           F+  I +  P Q T  +   ++ S+  + WQ++   F W+  ++            +  L
Sbjct: 142 FVADILDARPVQMTPTDYCFVVKSVGQESWQRALEVFEWLNLRHWHSPNARMVAAILGVL 201

Query: 198 RFGRQFQLIEQLANEM-------VSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYK 250
             GR  Q  E LA E+       V + +++    Y+ ++    R   F +A E  + M +
Sbjct: 202 --GRWNQ--ESLAVEIFTRAEPTVGDRVQV----YNAMMGVYSRSGKFSKAQELLDAMRQ 253

Query: 251 TGLMPDEVTYSAILDVYAKSGKVEE--VLSLYERGVASGWKPDPIAFSVLGKMFGESGDY 308
            G +PD ++++ +++   KSG +    V+ L +    SG +PD I ++ L        + 
Sbjct: 254 RGCVPDLISFNTLINARLKSGGLTPNLVVELLDMVRNSGLRPDAITYNTLLSACSRDSNL 313

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
           +G   V ++M++   QP+L  YN ++   G+ G    A  LF E+   G +PD  T  +L
Sbjct: 314 EGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERLFIELELKGFSPDAVTYNSL 373

Query: 369 IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428
           +  + + R  +   E++++M++  +  D + YNT+++M    G ++ A +L++DMK    
Sbjct: 374 LYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSG 433

Query: 429 CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLV 488
             PD  +YT +++  G       A  L  EM ++G+   +   + LI    KA + ++  
Sbjct: 434 RNPDAITYTVLIDSLGKANRSVEAAALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAE 493

Query: 489 RVFGVSIDRGVKPDDRLCGCLLSVV 513
             F   +  G KPD+     +L V+
Sbjct: 494 DTFSCMLRSGTKPDNLAYSVMLDVL 518



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 153/314 (48%), Gaps = 7/314 (2%)

Query: 226 STIITCAKRCNLFDEAIEWFERMYKTGLMPDEV-TYSAILDVYAKSGKVEEVLSLYERGV 284
           + I+    R N    A+E F R   T  + D V  Y+A++ VY++SGK  +   L +   
Sbjct: 195 AAILGVLGRWNQESLAVEIFTRAEPT--VGDRVQVYNAMMGVYSRSGKFSKAQELLDAMR 252

Query: 285 ASGWKPDPIAFSVLGKMFGESGDY--DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
             G  PD I+F+ L     +SG    + +  +L  +++ G++P+ + YNTLL A  +   
Sbjct: 253 QRGCVPDLISFNTLINARLKSGGLTPNLVVELLDMVRNSGLRPDAITYNTLLSACSRDSN 312

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
              A  +F++M      PD  T  A+I +YG+   A +A  L+  +    +  D + YN+
Sbjct: 313 LEGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERLFIELELKGFSPDAVTYNS 372

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
           LL   A     E+ + +++ M+   + K D  +Y  ++++YG  G +D A++L+++M  L
Sbjct: 373 LLYAFARERNTEKVKEVYQQMQKMGFGK-DEMTYNTIIHMYGKQGQLDLALQLYKDMKGL 431

Query: 463 -GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSED 521
            G   + +  T LI  LGKA R  +   +    +D G+KP  +    L+   +     E+
Sbjct: 432 SGRNPDAITYTVLIDSLGKANRSVEAAALMSEMLDVGIKPTLQTYSALICGYAKAGKREE 491

Query: 522 VGKVITCLQQANPK 535
                +C+ ++  K
Sbjct: 492 AEDTFSCMLRSGTK 505



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 85/336 (25%), Positives = 148/336 (44%), Gaps = 46/336 (13%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
             + +++  L P + I YN  + +       +   ++  +M ++  + D  TY+ +I+  
Sbjct: 284 LLDMVRNSGLRP-DAITYNTLLSACSRDSNLEGAVKVFEDMEAHRCQPDLWTYNAMISVY 342

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            RC L  EA   F  +   G  PD VTY+++L  +A+    E+V  +Y++    G+  D 
Sbjct: 343 GRCGLAAEAERLFIELELKGFSPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDE 402

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSL-GVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
           + ++ +  M+G+ G  D    + ++MK L G  P+ + Y  L++++GKA +   A +L  
Sbjct: 403 MTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRSVEAAALMS 462

Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411
           EM++ G+ P  +T +ALI  Y KA                                   G
Sbjct: 463 EMLDVGIKPTLQTYSALICGYAKA-----------------------------------G 487

Query: 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC 471
             EEAE  F  M L    KPDN +Y+ ML++   G     A  L+ +M   G   +    
Sbjct: 488 KREEAEDTFSCM-LRSGTKPDNLAYSVMLDVLLRGNETRKAWVLYRDMISDGHTPSHSLY 546

Query: 472 TCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCG 507
             +I  L K  R DD        + + ++  + LCG
Sbjct: 547 ELMILGLMKENRSDD--------VQKTIRDMEELCG 574



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 106/488 (21%), Positives = 201/488 (41%), Gaps = 42/488 (8%)

Query: 232  AKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291
            A+  N+F E  + +  M   G +P    Y  ++++  K  +V +   +      + +K +
Sbjct: 868  ARAGNIF-EVNKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVE 926

Query: 292  PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
               ++ + KM+    DY     V Q +K  G++P+   YNTL+    +  +P    SL  
Sbjct: 927  LAIWNSMLKMYTVIEDYKKTVQVYQRIKESGLEPDETTYNTLIIMYCRDRRPEEGYSLMQ 986

Query: 352  EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411
            +M   GL P   T  +LI  +GK +  + A +L+E +      +D   Y+T++ +  D G
Sbjct: 987  QMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSG 1046

Query: 412  LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC 471
               +AE+L + MK +   +P   +   ++  Y S GN   A ++   +    V +  +  
Sbjct: 1047 SDSKAEKLLQMMKNAG-IEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKNTEVELTTLPY 1105

Query: 472  TCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ 531
            + +I    +++     +         G++PD R+  C +   S  +   +V  ++  LQ 
Sbjct: 1106 SSVIDAYLRSKDYKSGIERLLEMKKEGLEPDHRIWTCFVRAASFSKEKSEVMLLLKALQD 1165

Query: 532  -----------ANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDIC 580
                         P+L     L+ +    FE         +K  E +A   F N L+++ 
Sbjct: 1166 IGFDIPIRLLGGRPEL-----LVSEVDGCFEK--------LKSIEDNAALNFANALLNLL 1212

Query: 581  RNRNLNERAHELLYLGTLYGLYPGLHNKTLD-EWSLDVRSLSVGAAQTA-LEEWMWTLAK 638
                L   +  +  L    G++     +  D +W  D R LS GAA  A LE +  +   
Sbjct: 1213 WAFELRATSSWVFQLAIKRGIFSLDVFRVADKDWGADFRRLSGGAALDASLEGYPESPKS 1272

Query: 639  IVLREEVLPQLFLAETGTGTHKFSQ-GLATAFASHVNKLAAPFRQSEGKAGCFVATREDL 697
            +VL              TGT +++   L     + + ++ +PF   + + G  VA    L
Sbjct: 1273 VVLI-------------TGTAEYNGVSLDKTLKACLWEMGSPFLPCKTRTGLLVAKAHSL 1319

Query: 698  VSWVQARP 705
              W++  P
Sbjct: 1320 RMWLKDSP 1327



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 85/412 (20%), Positives = 173/412 (41%), Gaps = 19/412 (4%)

Query: 205  LIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAIL 264
            L E LA+  V       +  Y T++ C      + EA + F  +  +G  P E    +++
Sbjct: 664  LDEYLADPCVHGWCFGGSTMYETLLHCCVANEHYAEASQVFSELRLSGCEPSESVCKSMV 723

Query: 265  DVYAKSGKVEEVLSLYERGVASGWK--PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG 322
             VY K G  E    +  +    G+     P+   ++ + +G+   +     V+  ++  G
Sbjct: 724  VVYCKLGFPETAYQVVNQAETKGFHFACSPMYTDII-EAYGKLKLWQKAESVVGNLRQSG 782

Query: 323  VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382
              P+L  +N+L+ A  + G    AR++F+ M+  G +P  +++  L+     A      L
Sbjct: 783  RTPDLKTWNSLMSAYAECGCYERARAIFNTMMRDGPSPTVESINKLL----HALCVDGRL 838

Query: 383  ELWERMRENKWPMDFILYNT----LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTA 438
            E    + E    M F +  +    +L+  A  G + E  +++  MK + Y  P    Y  
Sbjct: 839  EELYVVVEELQDMGFKISKSSILLMLDAFARAGNIFEVNKIYSSMKAAGYL-PTIRLYRM 897

Query: 439  MLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRG 498
            M+ +   G  V +A  +  EM E    + +     +++           V+V+    + G
Sbjct: 898  MIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTVIEDYKKTVQVYQRIKESG 957

Query: 499  VKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ--ANPKLVAFLNLIE--DNSTGFENIK 554
            ++PD+     L+ +       E+   ++  ++    +PKL  + +LI         E  +
Sbjct: 958  LEPDETTYNTLIIMYCRDRRPEEGYSLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAE 1017

Query: 555  EEFRNVI-KDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGL 605
            + F  ++ K  ++D  R F + ++ I R+   + +A +LL +    G+ P L
Sbjct: 1018 QLFEELLSKGLKLD--RSFYHTMMKISRDSGSDSKAEKLLQMMKNAGIEPTL 1067



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/213 (22%), Positives = 95/213 (44%), Gaps = 1/213 (0%)

Query: 183  FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
            F +E   +N  +K       ++   Q+   +  + +E D  TY+T+I    R    +E  
Sbjct: 923  FKVELAIWNSMLKMYTVIEDYKKTVQVYQRIKESGLEPDETTYNTLIIMYCRDRRPEEGY 982

Query: 243  EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
               ++M   GL P   TY +++  + K   +E+   L+E  ++ G K D   +  + K+ 
Sbjct: 983  SLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKIS 1042

Query: 303  GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
             +SG       +LQ MK+ G++P L   + L+ +   +G P  A  +   +  + +    
Sbjct: 1043 RDSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKNTEVELTT 1102

Query: 363  KTLTALIKIYGKARWAKDALE-LWERMRENKWP 394
               +++I  Y +++  K  +E L E  +E   P
Sbjct: 1103 LPYSSVIDAYLRSKDYKSGIERLLEMKKEGLEP 1135



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 87/208 (41%), Gaps = 2/208 (0%)

Query: 325 PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384
           PN  +   +L  +G+  +  LA  +F    E  +    +   A++ +Y ++     A EL
Sbjct: 189 PNARMVAAILGVLGRWNQESLAVEIFTR-AEPTVGDRVQVYNAMMGVYSRSGKFSKAQEL 247

Query: 385 WERMRENKWPMDFILYNTLLNM-CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIY 443
            + MR+     D I +NTL+N      GL         DM  +   +PD  +Y  +L+  
Sbjct: 248 LDAMRQRGCVPDLISFNTLINARLKSGGLTPNLVVELLDMVRNSGLRPDAITYNTLLSAC 307

Query: 444 GSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
               N++ A+++FE+M       ++     +I   G+     +  R+F     +G  PD 
Sbjct: 308 SRDSNLEGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERLFIELELKGFSPDA 367

Query: 504 RLCGCLLSVVSLCETSEDVGKVITCLQQ 531
                LL   +    +E V +V   +Q+
Sbjct: 368 VTYNSLLYAFARERNTEKVKEVYQQMQK 395


>gi|296086456|emb|CBI32045.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 83/279 (29%), Positives = 138/279 (49%), Gaps = 1/279 (0%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           +L +EM   +I  D ITY+ +I    +     EA + F  M    L PDEVTY+A++D Y
Sbjct: 279 RLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGY 338

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            K GK++E  SL+ + +  G  P+ + ++ L     + G+ D    +L EM   G++ N+
Sbjct: 339 CKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNI 398

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
             YN+L+  + KAG    A  L  +M  +G  PD  T T L+  Y K+R    A EL  +
Sbjct: 399 YTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQ 458

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           M + +     + +N L+N     G++E+ E+L + M L     P+  +Y +++  Y    
Sbjct: 459 MLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWM-LEKGIMPNATTYNSLIKQYCIRN 517

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
           N+    E++  M   GV  +      LI+   KAR + +
Sbjct: 518 NMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKE 556



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 123/265 (46%), Gaps = 9/265 (3%)

Query: 241 AIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGK 300
            ++  E M   GL P+  TY+ ++ +  K+GKV E   +    ++ G  PD + ++ L  
Sbjct: 207 VLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLID 266

Query: 301 MFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTP 360
            F + G+      +  EM+   + P+ + Y  ++  + + G+   A  LF EMV   L P
Sbjct: 267 GFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEP 326

Query: 361 DEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLF 420
           DE T TALI  Y K    K+A  L  +M +     + + Y  L +     G V+ A  L 
Sbjct: 327 DEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELL 386

Query: 421 EDMKLSDYCKP----DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
            +M     C+     + Y+Y +++N     GN+D A++L ++M   G   + +  T L+ 
Sbjct: 387 HEM-----CRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMD 441

Query: 477 CLGKARRIDDLVRVFGVSIDRGVKP 501
              K+R +     +    +DR ++P
Sbjct: 442 AYCKSREMVRAHELLRQMLDRELQP 466



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 135/295 (45%), Gaps = 1/295 (0%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           +L  EM    ++ +  TY+ +I    +     EA      M   G+ PD V Y+ ++D +
Sbjct: 209 KLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGF 268

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            K G V     L++        PD I ++ +     ++G       +  EM    ++P+ 
Sbjct: 269 CKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDE 328

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
           V Y  L++   K GK   A SL ++M++ GLTP+  T TAL     K      A EL   
Sbjct: 329 VTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHE 388

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           M      ++   YN+L+N     G +++A +L +DM+++ +  PD  +YT +++ Y    
Sbjct: 389 MCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGF-HPDAVTYTTLMDAYCKSR 447

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            +  A EL  +M +  +   V+    L+     +  ++D  ++    +++G+ P+
Sbjct: 448 EMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPN 502



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 112/239 (46%), Gaps = 1/239 (0%)

Query: 264 LDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGV 323
           LD    + K E VL L E     G KP+P  ++ +  +  ++G       VL+EM S G+
Sbjct: 195 LDGIKIALKGEWVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGI 254

Query: 324 QPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALE 383
            P+ V+Y TL++   K G    A  LFDEM +  ++PD  T TA+I    +     +A +
Sbjct: 255 APDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADK 314

Query: 384 LWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIY 443
           L+  M   +   D + Y  L++     G ++EA  L   M L     P+  +YTA+ +  
Sbjct: 315 LFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQM-LQMGLTPNIVTYTALADGL 373

Query: 444 GSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
              G VD A EL  EM   G+ +N+     L+  L KA  ID  V++       G  PD
Sbjct: 374 CKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPD 432



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 112/254 (44%), Gaps = 1/254 (0%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           +L +EM    +EL+  TY++++    +    D+A++  + M   G  PD VTY+ ++D Y
Sbjct: 384 ELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAY 443

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            KS ++     L  + +    +P  + F+VL   F  SG  +    +L+ M   G+ PN 
Sbjct: 444 CKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNA 503

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
             YN+L++             ++  M   G+ PD  T   LIK + KAR  K+A  L   
Sbjct: 504 TTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRD 563

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           M    + +    YN L+          EA  LFE M+       D   Y    +I    G
Sbjct: 564 MVGKGFNLTVSSYNALIKGFYKRKKFLEARELFEQMRREGLV-ADREIYNIFADINYDEG 622

Query: 448 NVDNAIELFEEMSE 461
            ++  +EL +E  E
Sbjct: 623 KMELTLELCDEAIE 636



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 114/257 (44%), Gaps = 1/257 (0%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L N+M+   +  + +TY+ +     +C   D A E    M + GL  +  TY+++++   
Sbjct: 350 LHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLC 409

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           K+G +++ + L +    +G+ PD + ++ L   + +S +      +L++M    +QP +V
Sbjct: 410 KAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVV 469

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            +N L+     +G       L   M+E G+ P+  T  +LIK Y      +   E++  M
Sbjct: 470 TFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGM 529

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
                  D   YN L+        ++EA  L  DM    +      SY A++  +     
Sbjct: 530 CAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGF-NLTVSSYNALIKGFYKRKK 588

Query: 449 VDNAIELFEEMSELGVA 465
              A ELFE+M   G+ 
Sbjct: 589 FLEARELFEQMRREGLV 605



 Score = 59.3 bits (142), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/202 (19%), Positives = 89/202 (44%), Gaps = 4/202 (1%)

Query: 183 FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
           F  + + Y   M +    R+     +L  +M+  E++   +T++ ++       + ++  
Sbjct: 429 FHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGE 488

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
           +  + M + G+MP+  TY++++  Y     +     +Y    A G  PD   +++L K  
Sbjct: 489 KLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGH 548

Query: 303 GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
            ++ +     ++ ++M   G    +  YN L++   K  K   AR LF++M   GL  D 
Sbjct: 549 CKARNMKEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADR 608

Query: 363 KTLTALIKIYGKARWAKDALEL 384
           +    +  I+    + +  +EL
Sbjct: 609 E----IYNIFADINYDEGKMEL 626



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 77/178 (43%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
            + +NV M         +  E+L   M+   I  +  TY+++I      N      E + 
Sbjct: 468 VVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYR 527

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
            M   G++PD  TY+ ++  + K+  ++E   L+   V  G+     +++ L K F +  
Sbjct: 528 GMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRK 587

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
            +   R + ++M+  G+  +  +YN   +     GK  L   L DE +E  L  D +T
Sbjct: 588 KFLEARELFEQMRREGLVADREIYNIFADINYDEGKMELTLELCDEAIEKCLVGDIQT 645


>gi|255661142|gb|ACU25740.1| pentatricopeptide repeat-containing protein [Verbena canescens]
          Length = 426

 Score =  125 bits (314), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 87/283 (30%), Positives = 145/283 (51%), Gaps = 7/283 (2%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D  TYST+IT   +  LFD A+ W ++M +  +  D V YS ++++  K     + +S++
Sbjct: 8   DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
            R   SG+ PD +A++ +  +FG++  +   R ++ EM++ GV P    Y+TLL    + 
Sbjct: 68  SRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPTTASYSTLLTMYVEN 127

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
            K   A S+F EM E     D  T   +I +YG+   AK+A +L+  MR+     + + Y
Sbjct: 128 KKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSY 187

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           NTLL +  D  L  EA  LF  M+  +  + +  +Y +M+ IYG     + A  L +EM 
Sbjct: 188 NTLLRVYGDAELFGEAIHLFRLMQRKN-IEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 246

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVF------GVSIDR 497
             G+  N +  + +I   GK  ++D    +F      GV ID+
Sbjct: 247 NRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQ 289



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/367 (22%), Positives = 168/367 (45%), Gaps = 6/367 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K     P + + YN  +      + F+    L +EM +  +     +YS
Sbjct: 60  YSKAISIFSRLKRSGFTP-DLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPTTASYS 118

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY + G  +E   L+      
Sbjct: 119 TLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 178

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   ++ N+V YN+++   GK  +   A
Sbjct: 179 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKA 238

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R +   +D +LY T++  
Sbjct: 239 NNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVA 298

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K     +PDN      ++I    G ++ A  +F +  + G   
Sbjct: 299 YERAGLVAHAKRLLHELK-----RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVK 353

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           ++     +I    K ++  ++V VF      G  PD  +   +L+        +    V 
Sbjct: 354 DITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALILNAYGKLHEFDKANDVY 413

Query: 527 TCLQQAN 533
             +Q+  
Sbjct: 414 MEMQEVG 420



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 137/271 (50%), Gaps = 1/271 (0%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
            +M  + +  D + YS +I  +++   + +AI  F R+ ++G  PD V Y+A+++V+ K+
Sbjct: 33  QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKA 92

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
               E  SL      +G  P   ++S L  M+ E+  +     V  EM+ +    +L   
Sbjct: 93  KLFREARSLISEMRTAGVTPTTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTC 152

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
           N +++  G+ G    A  LF  M + G+ P+  +   L+++YG A    +A+ L+  M+ 
Sbjct: 153 NIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR 212

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
                + + YN+++ +       E+A  L ++M+ +   +P++ +Y+ +++I+G  G +D
Sbjct: 213 KNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ-NRGIEPNSITYSTIISIWGKVGKLD 271

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
            A  LF+++   GV I+ +    +I    +A
Sbjct: 272 RAAMLFQKLRSSGVDIDQVLYQTMIVAYERA 302



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 124/261 (47%), Gaps = 1/261 (0%)

Query: 252 GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGI 311
            L PD  TYS ++  + K G  +  LS  ++        D + +S L ++  +  DY   
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 312 RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371
             +   +K  G  P+LV YN ++   GKA     ARSL  EM  +G+TP   + + L+ +
Sbjct: 64  ISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPTTASYSTLLTM 123

Query: 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
           Y + +   +AL ++  MRE K  +D    N ++++   +G+ +EA++LF  M+     +P
Sbjct: 124 YVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG-IEP 182

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           +  SY  +L +YG       AI LF  M    +  NV+    ++   GK    +    + 
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 242

Query: 492 GVSIDRGVKPDDRLCGCLLSV 512
               +RG++P+      ++S+
Sbjct: 243 QEMQNRGIEPNSITYSTIISI 263



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/242 (21%), Positives = 105/242 (43%), Gaps = 5/242 (2%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           P+  +    L +    + + ++   F  ++ +N+     + YN  M       + +    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNI-EQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  EM +  IE ++ITYSTII+   +    D A   F+++  +G+  D+V Y  ++  Y 
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYE 300

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           ++G V       +R +    +PD I   +   +   +G  +   +V ++    G   ++ 
Sbjct: 301 RAGLVAHA----KRLLHELKRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDIT 356

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
           V+  ++    K  K G    +FD+M   G  PD   +  ++  YGK      A +++  M
Sbjct: 357 VFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALILNAYGKLHEFDKANDVYMEM 416

Query: 389 RE 390
           +E
Sbjct: 417 QE 418



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 86/191 (45%), Gaps = 3/191 (1%)

Query: 355 ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
           E  L+PD  T + LI  +GK      AL   ++M +++ P D +LY+ L+ +   +    
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
           +A  +F  +K S +  PD  +Y AM+N++G       A  L  EM   GV       + L
Sbjct: 62  KAISIFSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPTTASYSTL 120

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN- 533
           +    + ++  + + VF    +     D   C  ++ V      +++  K+   +++   
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180

Query: 534 -PKLVAFLNLI 543
            P +V++  L+
Sbjct: 181 EPNVVSYNTLL 191


>gi|255539196|ref|XP_002510663.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551364|gb|EEF52850.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 695

 Score =  125 bits (314), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 149/306 (48%), Gaps = 9/306 (2%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           W+ +      +++ N+ P   +F  + + S R   ++Q   Q+  EM ++ +  D   Y+
Sbjct: 377 WESARIVLKEMEANNIMPNSYVFSRI-LASYRDRGEWQKSFQVLKEMKNSGVRPDRHFYN 435

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
            +I    + +  D A++ F++M   G+ PD VT++ ++D + K+   E    L+E  +  
Sbjct: 436 VMIDTFGKFSCLDHAMDTFDKMLSEGIQPDTVTWNTLIDCHCKAELHERAEELFEEMMEK 495

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G+ P    F+++   FGE   +D ++ ++  M+SLG+ PN+V Y TL++  GK+G+   A
Sbjct: 496 GFSPCVTTFNIMINSFGEQERWDDVKTLMGNMRSLGLLPNVVTYTTLIDIYGKSGRFSDA 555

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
               ++M  +GL P      ALI  Y +   ++ A+  +  MR +      +  N+L+N 
Sbjct: 556 IECLEDMKSAGLKPSSTMYNALINAYAQKGLSEQAVNAFRLMRADSLKPSLLALNSLINA 615

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
             +     EA  + + MK +D  KPD  +YT ++         +    ++EEM       
Sbjct: 616 FGEDRRDAEAFSVLKYMKEND-LKPDVVTYTTLMKALIRVDKFNKVPSVYEEMI------ 668

Query: 467 NVMGCT 472
            + GCT
Sbjct: 669 -LAGCT 673



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 116/478 (24%), Positives = 201/478 (42%), Gaps = 50/478 (10%)

Query: 170 SYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTII 229
           +Y   +W++  NL     + Y++ + +L  GR  +L E     ++S +  L  +TY+ +I
Sbjct: 137 AYAVVSWLQKHNLCFSYELLYSILIHAL--GRSEKLYEAF---LLSQQQALSPLTYNALI 191

Query: 230 TCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAI-------------------------- 263
               R N  ++AI    RM + G   D V YS I                          
Sbjct: 192 NACARNNDLEKAINLISRMRQDGYPSDFVNYSLIIQSLVRSNRIDSPILQKLYSEIQCDK 251

Query: 264 --LDV---------YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIR 312
             LDV         +AK+G   + +       ASG  P       +    G+SG      
Sbjct: 252 LELDVQLSNDIIVGFAKAGDPNKAMEFLGMVQASGLSPRTATLIAVISALGDSGRIIEAE 311

Query: 313 YVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIY 372
            + +EMK  G++P    YN LL+   KAG    A  +  EM  SG++PDE T + LI  Y
Sbjct: 312 AIFEEMKDNGLKPKTRAYNGLLKGYVKAGMLKDAEFIVSEMERSGVSPDECTYSLLIDAY 371

Query: 373 GKA-RWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
             A RW    + L E    N  P  ++ ++ +L    D G  +++ ++ ++MK S   +P
Sbjct: 372 SNAGRWESARIVLKEMEANNIMPNSYV-FSRILASYRDRGEWQKSFQVLKEMKNSG-VRP 429

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           D + Y  M++ +G    +D+A++ F++M   G+  + +    LI C  KA   +    +F
Sbjct: 430 DRHFYNVMIDTFGKFSCLDHAMDTFDKMLSEGIQPDTVTWNTLIDCHCKAELHERAEELF 489

Query: 492 GVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAFLNLIE--DNS 547
              +++G  P       +++     E  +DV  ++  ++     P +V +  LI+    S
Sbjct: 490 EEMMEKGFSPCVTTFNIMINSFGEQERWDDVKTLMGNMRSLGLLPNVVTYTTLIDIYGKS 549

Query: 548 TGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGL 605
             F +  E   + +K   +       N LI+    + L+E+A     L     L P L
Sbjct: 550 GRFSDAIECLED-MKSAGLKPSSTMYNALINAYAQKGLSEQAVNAFRLMRADSLKPSL 606



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 151/333 (45%), Gaps = 2/333 (0%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           K+  F   +++  L P       V       GR  +  E +  EM  N ++     Y+ +
Sbjct: 274 KAMEFLGMVQASGLSPRTATLIAVISALGDSGRIIE-AEAIFEEMKDNGLKPKTRAYNGL 332

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
           +    +  +  +A      M ++G+ PDE TYS ++D Y+ +G+ E    + +   A+  
Sbjct: 333 LKGYVKAGMLKDAEFIVSEMERSGVSPDECTYSLLIDAYSNAGRWESARIVLKEMEANNI 392

Query: 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348
            P+   FS +   + + G++     VL+EMK+ GV+P+   YN +++  GK      A  
Sbjct: 393 MPNSYVFSRILASYRDRGEWQKSFQVLKEMKNSGVRPDRHFYNVMIDTFGKFSCLDHAMD 452

Query: 349 LFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCA 408
            FD+M+  G+ PD  T   LI  + KA   + A EL+E M E  +      +N ++N   
Sbjct: 453 TFDKMLSEGIQPDTVTWNTLIDCHCKAELHERAEELFEEMMEKGFSPCVTTFNIMINSFG 512

Query: 409 DIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINV 468
           +    ++ + L  +M+ S    P+  +YT +++IYG  G   +AIE  E+M   G+  + 
Sbjct: 513 EQERWDDVKTLMGNMR-SLGLLPNVVTYTTLIDIYGKSGRFSDAIECLEDMKSAGLKPSS 571

Query: 469 MGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
                LI    +    +  V  F +     +KP
Sbjct: 572 TMYNALINAYAQKGLSEQAVNAFRLMRADSLKP 604



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 73/269 (27%), Positives = 138/269 (51%), Gaps = 8/269 (2%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLAN---EMVSNEIELDNI 223
           WQKS+     +K+  + P +  FYNV + +  FG+ F  ++   +   +M+S  I+ D +
Sbjct: 412 WQKSFQVLKEMKNSGVRP-DRHFYNVMIDT--FGK-FSCLDHAMDTFDKMLSEGIQPDTV 467

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           T++T+I C  +  L + A E FE M + G  P   T++ +++ + +  + ++V +L    
Sbjct: 468 TWNTLIDCHCKAELHERAEELFEEMMEKGFSPCVTTFNIMINSFGEQERWDDVKTLMGNM 527

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
            + G  P+ + ++ L  ++G+SG +      L++MKS G++P+  +YN L+ A  + G  
Sbjct: 528 RSLGLLPNVVTYTTLIDIYGKSGRFSDAIECLEDMKSAGLKPSSTMYNALINAYAQKGLS 587

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
             A + F  M    L P    L +LI  +G+ R   +A  + + M+EN    D + Y TL
Sbjct: 588 EQAVNAFRLMRADSLKPSLLALNSLINAFGEDRRDAEAFSVLKYMKENDLKPDVVTYTTL 647

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPD 432
           +     +    +   ++E+M L+  C PD
Sbjct: 648 MKALIRVDKFNKVPSVYEEMILAG-CTPD 675



 Score =  115 bits (288), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 100/431 (23%), Positives = 189/431 (43%), Gaps = 42/431 (9%)

Query: 180 QNLFPMETIFYNVTMKSLRFGRQFQ--LIEQLANEMVSNEIELDNITYSTIITCAKRCNL 237
           Q+ +P + + Y++ ++SL    +    ++++L +E+  +++ELD    + II    +   
Sbjct: 212 QDGYPSDFVNYSLIIQSLVRSNRIDSPILQKLYSEIQCDKLELDVQLSNDIIVGFAKAGD 271

Query: 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
            ++A+E+   +  +GL P   T  A++     SG++ E  +++E    +G KP   A++ 
Sbjct: 272 PNKAMEFLGMVQASGLSPRTATLIAVISALGDSGRIIEAEAIFEEMKDNGLKPKTRAYNG 331

Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR---------- 347
           L K + ++G      +++ EM+  GV P+   Y+ L++A   AG+   AR          
Sbjct: 332 LLKGYVKAGMLKDAEFIVSEMERSGVSPDECTYSLLIDAYSNAGRWESARIVLKEMEANN 391

Query: 348 -------------------------SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382
                                     +  EM  SG+ PD      +I  +GK      A+
Sbjct: 392 IMPNSYVFSRILASYRDRGEWQKSFQVLKEMKNSGVRPDRHFYNVMIDTFGKFSCLDHAM 451

Query: 383 ELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNI 442
           + +++M       D + +NTL++      L E AE LFE+M    +  P   ++  M+N 
Sbjct: 452 DTFDKMLSEGIQPDTVTWNTLIDCHCKAELHERAEELFEEMMEKGF-SPCVTTFNIMINS 510

Query: 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           +G     D+   L   M  LG+  NV+  T LI   GK+ R  D +         G+KP 
Sbjct: 511 FGEQERWDDVKTLMGNMRSLGLLPNVVTYTTLIDIYGKSGRFSDAIECLEDMKSAGLKPS 570

Query: 503 DRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAFLNLIEDNSTGFENIKEEFRNV 560
             +   L++  +    SE        ++  +  P L+A  +LI  N+ G +    E  +V
Sbjct: 571 STMYNALINAYAQKGLSEQAVNAFRLMRADSLKPSLLALNSLI--NAFGEDRRDAEAFSV 628

Query: 561 IKDTEVDARRP 571
           +K  + +  +P
Sbjct: 629 LKYMKENDLKP 639



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 96/196 (48%), Gaps = 1/196 (0%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F  +  +   P  T F N+ + S     ++  ++ L   M S  +  + +TY+T+I   
Sbjct: 488 LFEEMMEKGFSPCVTTF-NIMINSFGEQERWDDVKTLMGNMRSLGLLPNVVTYTTLIDIY 546

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +   F +AIE  E M   GL P    Y+A+++ YA+ G  E+ ++ +    A   KP  
Sbjct: 547 GKSGRFSDAIECLEDMKSAGLKPSSTMYNALINAYAQKGLSEQAVNAFRLMRADSLKPSL 606

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           +A + L   FGE         VL+ MK   ++P++V Y TL++A+ +  K     S+++E
Sbjct: 607 LALNSLINAFGEDRRDAEAFSVLKYMKENDLKPDVVTYTTLMKALIRVDKFNKVPSVYEE 666

Query: 353 MVESGLTPDEKTLTAL 368
           M+ +G TPD K    L
Sbjct: 667 MILAGCTPDRKARAML 682


>gi|307105412|gb|EFN53661.1| hypothetical protein CHLNCDRAFT_58444 [Chlorella variabilis]
          Length = 1131

 Score =  125 bits (314), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 82/251 (32%), Positives = 123/251 (49%), Gaps = 1/251 (0%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           LA EM    IE +  T+S ++    +C  +  A++ +  M   G   + VTY+ ++DVY 
Sbjct: 313 LAEEMRDRGIERNVHTFSALMNVCIKCGQYKLALDVYRDMQAAGCPANVVTYNTLIDVYG 372

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           KSG+ EE L++ E+      +P    F+ L      S  +     V ++M +    PN  
Sbjct: 373 KSGQWEEALAVLEQMKRERIQPVTRTFNTLMIACNTSNQWQEALRVYEQMAASSHPPNTT 432

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            YN L+ A  K G      ++F EMV+ G      T ++LI    KA   K AL+L+E M
Sbjct: 433 TYNALISAHSKGGDLPKVLAVFKEMVQKGCERSVITYSSLISACEKAGEWKLALQLFEEM 492

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
           R      + I YN+L+  CA     E+A  +FE M+    C+PD  SYTA++  Y  GG 
Sbjct: 493 RGEGCVPNVISYNSLITACAQGAQWEKAAEVFEQMQRQG-CRPDVVSYTALIQAYERGGQ 551

Query: 449 VDNAIELFEEM 459
              A+  FEEM
Sbjct: 552 WRRALAAFEEM 562



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 119/232 (51%), Gaps = 5/232 (2%)

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLA--NEMVSNEIELDNITYSTIITCAKRCNLFDEA 241
           P   + YN  +    +G+  Q  E LA   +M    I+    T++T++      N + EA
Sbjct: 358 PANVVTYNTLIDV--YGKSGQWEEALAVLEQMKRERIQPVTRTFNTLMIACNTSNQWQEA 415

Query: 242 IEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKM 301
           +  +E+M  +   P+  TY+A++  ++K G + +VL++++  V  G +   I +S L   
Sbjct: 416 LRVYEQMAASSHPPNTTTYNALISAHSKGGDLPKVLAVFKEMVQKGCERSVITYSSLISA 475

Query: 302 FGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD 361
             ++G++     + +EM+  G  PN++ YN+L+ A  +  +   A  +F++M   G  PD
Sbjct: 476 CEKAGEWKLALQLFEEMRGEGCVPNVISYNSLITACAQGAQWEKAAEVFEQMQRQGCRPD 535

Query: 362 EKTLTALIKIYGKARWAKDALELWERM-RENKWPMDFILYNTLLNMCADIGL 412
             + TALI+ Y +    + AL  +E M R      D I+YNT++++  + G+
Sbjct: 536 VVSYTALIQAYERGGQWRRALAAFEEMIRARPCAPDSIVYNTIIDVLWETGV 587



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 70/311 (22%), Positives = 143/311 (45%), Gaps = 13/311 (4%)

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTG----LMP--DEVTYSAILDVYAKSGKV 273
           LD+   + +I    +  L     + F+ + + G    L P  DE T+++++        +
Sbjct: 248 LDSRGLAMVIKDLGKGGLPHRGAQLFDLLRRLGPGSPLAPLLDEFTFTSMISNCVAQQDL 307

Query: 274 EEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTL 333
              ++L E     G + +   FS L  +  + G Y     V ++M++ G   N+V YNTL
Sbjct: 308 GRAMALAEEMRDRGIERNVHTFSALMNVCIKCGQYKLALDVYRDMQAAGCPANVVTYNTL 367

Query: 334 LEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKW 393
           ++  GK+G+   A ++ ++M    + P  +T   L+     +   ++AL ++E+M  +  
Sbjct: 368 IDVYGKSGQWEEALAVLEQMKRERIQPVTRTFNTLMIACNTSNQWQEALRVYEQMAASSH 427

Query: 394 PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAI 453
           P +   YN L++  +  G + +   +F++M +   C+    +Y+++++     G    A+
Sbjct: 428 PPNTTTYNALISAHSKGGDLPKVLAVFKEM-VQKGCERSVITYSSLISACEKAGEWKLAL 486

Query: 454 ELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVV 513
           +LFEEM   G   NV+    LI    +  + +    VF     +G +PD      ++S  
Sbjct: 487 QLFEEMRGEGCVPNVISYNSLITACAQGAQWEKAAEVFEQMQRQGCRPD------VVSYT 540

Query: 514 SLCETSEDVGK 524
           +L +  E  G+
Sbjct: 541 ALIQAYERGGQ 551


>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
          Length = 1244

 Score =  125 bits (314), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 90/360 (25%), Positives = 173/360 (48%), Gaps = 5/360 (1%)

Query: 161 LNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIEL 220
           L  +K       F + +KS+  FP   + +N  + ++   +++ ++  L  +M    I  
Sbjct: 164 LRDIKLNDAIDLFSDMVKSRP-FP-SIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRN 221

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D  T++ +I C   C     A+    +M K G  PD VT  ++++ + +  +V + +SL 
Sbjct: 222 DLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLV 281

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
           ++ V  G+KPD +A++ +     ++   +      +E++  G++PN+V Y  L+  +  +
Sbjct: 282 DKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNS 341

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
            +   A  L  +M++  +TP+  T +AL+  + K     +A EL+E M       D + Y
Sbjct: 342 SRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTY 401

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           ++L+N       ++EA ++F D+ +S  C  D  SY  ++N +     V++ ++LF EMS
Sbjct: 402 SSLINGLCLHDRIDEANQMF-DLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMS 460

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSE 520
           + G+  N +    LIQ   +A  +D     F      G+ PD      LL    LC+  E
Sbjct: 461 QRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLG--GLCDNGE 518



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/269 (29%), Positives = 139/269 (51%), Gaps = 3/269 (1%)

Query: 199  FGRQFQLIE--QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPD 256
            F ++ +L+E  +L +EMV   I+   +TYS++I      +  DEA + FE M      PD
Sbjct: 950  FVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPD 1009

Query: 257  EVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQ 316
             VTY+ ++  + K  +VEE + ++      G   + + +++L +   ++GD D  + + +
Sbjct: 1010 VVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFK 1069

Query: 317  EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
            EM S GV PN++ YNTLL+ + K GK   A  +F+ +  S + P   T   +I+   KA 
Sbjct: 1070 EMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAG 1129

Query: 377  WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY 436
              +D  +L+  +       D + YNT+++     G  EEA+ LF++MK  D   P++  Y
Sbjct: 1130 KVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMK-EDGTLPNSGCY 1188

Query: 437  TAMLNIYGSGGNVDNAIELFEEMSELGVA 465
              ++      G+ + + EL +EM   G A
Sbjct: 1189 NTLIRARLRDGDREASAELIKEMRSCGFA 1217



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 81/342 (23%), Positives = 164/342 (47%), Gaps = 3/342 (0%)

Query: 161  LNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIEL 220
            L+ LK       F   +KS+  FP   I ++  + ++    +F ++  L  +M +  I  
Sbjct: 671  LSELKLDDAVALFGEMVKSRP-FP-SIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPH 728

Query: 221  DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
            ++ TYS +I C  R +    A+    +M K G  P+ VT S++L+ Y  S ++ E ++L 
Sbjct: 729  NHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALV 788

Query: 281  ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
            ++   +G++P+ + F+ L               ++  M + G QP+LV Y  ++  + K 
Sbjct: 789  DQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKR 848

Query: 341  GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
            G   LA +L ++M +  L P       +I    K +   DAL L++ M       + + Y
Sbjct: 849  GDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTY 908

Query: 401  NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
            ++L++   + G   +A RL  DM +     PD ++++A+++ +   G +  A +L++EM 
Sbjct: 909  SSLISCLCNYGRWSDASRLLSDM-IERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMV 967

Query: 461  ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            +  +  +++  + LI       R+D+  ++F   + +   PD
Sbjct: 968  KRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPD 1009



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 94/363 (25%), Positives = 165/363 (45%), Gaps = 45/363 (12%)

Query: 180  QNL-FPMETIFYNVTMKSLRFGRQFQLIEQLA--NEMVSNEIELDNITYSTIITCAKRCN 236
            QNL  P     Y++ +    F R+ QL   LA   +M+    E + +T S+++       
Sbjct: 722  QNLGIPHNHYTYSILINC--FCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSK 779

Query: 237  LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS 296
               EA+   ++M+ TG  P+ VT++ ++       K  E ++L +R VA G +PD + + 
Sbjct: 780  RISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYG 839

Query: 297  VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356
            V+     + GD D    +L +M+   ++P +++YNT+++ + K      A +LF EM   
Sbjct: 840  VVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETK 899

Query: 357  GLTPDEKTLTALIKI---YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
            G+ P+  T ++LI     YG  RW+ DA  L   M E K   D   ++ L++     G +
Sbjct: 900  GIRPNVVTYSSLISCLCNYG--RWS-DASRLLSDMIERKINPDVFTFSALIDAFVKEGKL 956

Query: 414  EEAERLFEDM----------------------------------KLSDYCKPDNYSYTAM 439
             EAE+L+++M                                   +S +C PD  +Y  +
Sbjct: 957  VEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTL 1016

Query: 440  LNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGV 499
            +  +     V+  +E+F EMS+ G+  N +    LIQ L +A   D    +F   +  GV
Sbjct: 1017 IKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGV 1076

Query: 500  KPD 502
             P+
Sbjct: 1077 PPN 1079



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 146/294 (49%), Gaps = 1/294 (0%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L ++MV    + D + Y+ II    +    ++A ++F+ + + G+ P+ VTY+A+++   
Sbjct: 280 LVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLC 339

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
            S +  +   L    +     P+ I +S L   F ++G     + + +EM  + + P++V
Sbjct: 340 NSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIV 399

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            Y++L+  +    +   A  +FD MV  G   D  +   LI  + KA+  +D ++L+  M
Sbjct: 400 TYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREM 459

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
            +     + + YNTL+      G V++A+  F  M       PD ++Y  +L      G 
Sbjct: 460 SQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGI-SPDIWTYNILLGGLCDNGE 518

Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           ++ A+ +FE+M +  + ++++  T +I+ + K  ++++   +F     +G+KPD
Sbjct: 519 LEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPD 572



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 159/331 (48%), Gaps = 5/331 (1%)

Query: 140 AFLRAITEIPHQPTRENALLILNSL---KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKS 196
           + +  + EI ++P       I++SL   K    ++ FF  I+ + + P   + Y   +  
Sbjct: 279 SLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRP-NVVTYTALVNG 337

Query: 197 LRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPD 256
           L    ++    +L ++M+  +I  + ITYS ++    +     EA E FE M +  + PD
Sbjct: 338 LCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPD 397

Query: 257 EVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQ 316
            VTYS++++      +++E   +++  V+ G   D ++++ L   F ++   +    + +
Sbjct: 398 IVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFR 457

Query: 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
           EM   G+  N V YNTL++   +AG    A+  F +M   G++PD  T   L+       
Sbjct: 458 EMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNG 517

Query: 377 WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY 436
             + AL ++E M++ +  +D + Y T++      G VEEA  LF  + L    KPD  +Y
Sbjct: 518 ELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGL-KPDIVTY 576

Query: 437 TAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
           T M++   + G +     L+ +M + G+  N
Sbjct: 577 TTMMSGLCTKGLLHEVEALYTKMKQEGLMKN 607



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/327 (25%), Positives = 147/327 (44%), Gaps = 3/327 (0%)

Query: 151  QPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPME--TIFYNVTMKSLRFGRQFQLIEQ 208
            QP      +++N L     +   FN +       +E   + YN  +  L   +       
Sbjct: 832  QPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALN 891

Query: 209  LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
            L  EM +  I  + +TYS++I+C      + +A      M +  + PD  T+SA++D + 
Sbjct: 892  LFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFV 951

Query: 269  KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
            K GK+ E   LY+  V     P  + +S L   F      D  + + + M S    P++V
Sbjct: 952  KEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVV 1011

Query: 329  VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
             YNTL++   K  +      +F EM + GL  +  T   LI+   +A     A E+++ M
Sbjct: 1012 TYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEM 1071

Query: 389  RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
              +  P + + YNTLL+     G +E+A  +FE ++ S   +P  Y+Y  M+      G 
Sbjct: 1072 VSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKM-EPTIYTYNIMIEGMCKAGK 1130

Query: 449  VDNAIELFEEMSELGVAINVMGCTCLI 475
            V++  +LF  +S  GV  +V+    +I
Sbjct: 1131 VEDGWDLFCNLSLKGVKPDVVAYNTMI 1157



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 144/317 (45%), Gaps = 1/317 (0%)

Query: 186  ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
            + + Y V +  L       L   L N+M   ++E   + Y+TII    +    D+A+  F
Sbjct: 834  DLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLF 893

Query: 246  ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
            + M   G+ P+ VTYS+++      G+  +   L    +     PD   FS L   F + 
Sbjct: 894  KEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKE 953

Query: 306  GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
            G       +  EM    + P++V Y++L+       +   A+ +F+ MV     PD  T 
Sbjct: 954  GKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTY 1013

Query: 366  TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
              LIK + K +  ++ +E++  M +     + + YN L+      G  + A+ +F++M +
Sbjct: 1014 NTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEM-V 1072

Query: 426  SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
            SD   P+  +Y  +L+     G ++ A+ +FE +    +   +     +I+ + KA +++
Sbjct: 1073 SDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVE 1132

Query: 486  DLVRVFGVSIDRGVKPD 502
            D   +F     +GVKPD
Sbjct: 1133 DGWDLFCNLSLKGVKPD 1149



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 123/259 (47%), Gaps = 9/259 (3%)

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
           ++L  EMV   I+ D +TYS++I      +  DEA + F+ M   G + D V+Y+ +++ 
Sbjct: 383 KELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLING 442

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
           + K+ +VE+ + L+      G   + + ++ L + F ++GD D  +    +M   G+ P+
Sbjct: 443 FCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPD 502

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
           +  YN LL  +   G+   A  +F++M +  +  D  T T +I+   K    ++A  L+ 
Sbjct: 503 IWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFC 562

Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
            +       D + Y T+++     GL+ E E L+  MK     K D            S 
Sbjct: 563 SLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKND---------CTLSD 613

Query: 447 GNVDNAIELFEEMSELGVA 465
           G++  + EL ++M   G A
Sbjct: 614 GDITLSAELIKKMLSCGYA 632



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 98/206 (47%)

Query: 179  SQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLF 238
            SQ      T+ YN+ ++ L       + +++  EMVS+ +  + +TY+T++    +    
Sbjct: 1037 SQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKL 1096

Query: 239  DEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
            ++A+  FE + ++ + P   TY+ +++   K+GKVE+   L+      G KPD +A++ +
Sbjct: 1097 EKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTM 1156

Query: 299  GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
               F   G  +    + +EMK  G  PN   YNTL+ A  + G    +  L  EM   G 
Sbjct: 1157 ISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGF 1216

Query: 359  TPDEKTLTALIKIYGKARWAKDALEL 384
              D  T+  +  +    R  K  L++
Sbjct: 1217 AGDASTIGLVTNMLHDGRLDKSFLDM 1242



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 113/237 (47%), Gaps = 1/237 (0%)

Query: 173  FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
             F ++ S++ FP + + YN  +K     ++ +   ++  EM    +  + +TY+ +I   
Sbjct: 997  MFEFMVSKHCFP-DVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGL 1055

Query: 233  KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
             +    D A E F+ M   G+ P+ +TY+ +LD   K+GK+E+ + ++E    S  +P  
Sbjct: 1056 FQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTI 1115

Query: 293  IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
              ++++ +   ++G  +    +   +   GV+P++V YNT++    + G    A +LF E
Sbjct: 1116 YTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKE 1175

Query: 353  MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCAD 409
            M E G  P+      LI+   +    + + EL + MR   +  D      + NM  D
Sbjct: 1176 MKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNMLHD 1232


>gi|255661196|gb|ACU25767.1| pentatricopeptide repeat-containing protein [Pitraea cuneato-ovata]
          Length = 426

 Score =  125 bits (314), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 86/283 (30%), Positives = 144/283 (50%), Gaps = 7/283 (2%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D  TYST+IT   +  LFD+A+ W ++M    +  D   YS ++++  K     + +S++
Sbjct: 8   DKYTYSTLITHFGKEGLFDDALSWLQKMEHDRVRGDLXLYSNLIELSRKLCDYSKAISIF 67

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
            R   SG  PD + ++ +  +FG++  +   R ++ EM++ GV P+ V Y TLL    + 
Sbjct: 68  SRLKRSGITPDLVVYNSMINVFGKAKLFREARSLICEMRTXGVMPDTVSYTTLLTMYVEN 127

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
            K   A S+F EM E     D  T   +I +YG+   AK+A +L+  MR+     + + Y
Sbjct: 128 KKFIEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWSMRKLGVEPNVVSY 187

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           NTLL + +D  L  EA  LF  M+  D  + +  +Y +M+ IYG     + A  L +EM 
Sbjct: 188 NTLLRVYSDAELFGEAXHLFRLMQRKD-IEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 246

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVF------GVSIDR 497
             G+  N +  + +I   GK  ++D    +F      G+ ID+
Sbjct: 247 SRGIEPNAITYSTIISIWGKVGKLDRAAMLFEKLRSSGIEIDQ 289



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/392 (22%), Positives = 176/392 (44%), Gaps = 12/392 (3%)

Query: 145 ITEIPHQPTRENALLILNSLKF------WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLR 198
           + ++ H   R +  L  N ++       + K+   F+ +K   + P + + YN  +    
Sbjct: 32  LQKMEHDRVRGDLXLYSNLIELSRKLCDYSKAISIFSRLKRSGITP-DLVVYNSMINVFG 90

Query: 199 FGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEV 258
             + F+    L  EM +  +  D ++Y+T++T       F EA+  F  M +   + D  
Sbjct: 91  KAKLFREARSLICEMRTXGVMPDTVSYTTLLTMYVENKKFIEALSVFAEMREIKCLLDLT 150

Query: 259 TYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEM 318
           T + ++DVY + G  +E   L+      G +P+ ++++ L +++ ++  +    ++ + M
Sbjct: 151 TCNIMIDVYGQLGMAKEADKLFWSMRKLGVEPNVVSYNTLLRVYSDAELFGEAXHLFRLM 210

Query: 319 KSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWA 378
           +   ++ N+V YN+++   GK  +   A +L  EM   G+ P+  T + +I I+GK    
Sbjct: 211 QRKDIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNAITYSTIISIWGKVGKL 270

Query: 379 KDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTA 438
             A  L+E++R +   +D +LY T++      GLV  A+RL  ++K      PDN     
Sbjct: 271 DRAAMLFEKLRSSGIEIDQVLYQTMIVAYERAGLVSHAKRLLHELK-----TPDNIPRDT 325

Query: 439 MLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRG 498
            + I    G ++ A  +F +  + G   ++     +I    K R+  ++V VF      G
Sbjct: 326 AIQILAGSGRMEEATWVFRQAIDAGEVKDITVFEQMIDLFSKYRKYSNVVEVFDKMRGLG 385

Query: 499 VKPDDRLCGCLLSVVSLCETSEDVGKVITCLQ 530
             PD  +   +L+        E    V   +Q
Sbjct: 386 YFPDSNVIALVLNAYGKLHDFEKANDVYLEMQ 417



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/286 (23%), Positives = 142/286 (49%), Gaps = 3/286 (1%)

Query: 198 RFGRQFQLIEQLA--NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMP 255
            FG++    + L+   +M  + +  D   YS +I  +++   + +AI  F R+ ++G+ P
Sbjct: 18  HFGKEGLFDDALSWLQKMEHDRVRGDLXLYSNLIELSRKLCDYSKAISIFSRLKRSGITP 77

Query: 256 DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVL 315
           D V Y+++++V+ K+    E  SL       G  PD ++++ L  M+ E+  +     V 
Sbjct: 78  DLVVYNSMINVFGKAKLFREARSLICEMRTXGVMPDTVSYTTLLTMYVENKKFIEALSVF 137

Query: 316 QEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA 375
            EM+ +    +L   N +++  G+ G    A  LF  M + G+ P+  +   L+++Y  A
Sbjct: 138 AEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWSMRKLGVEPNVVSYNTLLRVYSDA 197

Query: 376 RWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYS 435
               +A  L+  M+      + + YN+++ +       E+A  L ++M+ S   +P+  +
Sbjct: 198 ELFGEAXHLFRLMQRKDIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ-SRGIEPNAIT 256

Query: 436 YTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
           Y+ +++I+G  G +D A  LFE++   G+ I+ +    +I    +A
Sbjct: 257 YSTIISIWGKVGKLDRAAMLFEKLRSSGIEIDQVLYQTMIVAYERA 302



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 126/262 (48%), Gaps = 3/262 (1%)

Query: 252 GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGI 311
            L PD+ TYS ++  + K G  ++ LS  ++      + D   +S L ++  +  DY   
Sbjct: 4   ALSPDKYTYSTLITHFGKEGLFDDALSWLQKMEHDRVRGDLXLYSNLIELSRKLCDYSKA 63

Query: 312 RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371
             +   +K  G+ P+LVVYN+++   GKA     ARSL  EM   G+ PD  + T L+ +
Sbjct: 64  ISIFSRLKRSGITPDLVVYNSMINVFGKAKLFREARSLICEMRTXGVMPDTVSYTTLLTM 123

Query: 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM-KLSDYCK 430
           Y + +   +AL ++  MRE K  +D    N ++++   +G+ +EA++LF  M KL    +
Sbjct: 124 YVENKKFIEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWSMRKLG--VE 181

Query: 431 PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRV 490
           P+  SY  +L +Y        A  LF  M    +  NV+    ++   GK    +    +
Sbjct: 182 PNVVSYNTLLRVYSDAELFGEAXHLFRLMQRKDIEQNVVTYNSMMMIYGKTLEHEKANNL 241

Query: 491 FGVSIDRGVKPDDRLCGCLLSV 512
                 RG++P+      ++S+
Sbjct: 242 IQEMQSRGIEPNAITYSTIISI 263



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 99/244 (40%), Gaps = 36/244 (14%)

Query: 290 PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSL 349
           PD   +S L   FG+ G +D     LQ+M+   V+ +L +Y+ L+E   K      A S+
Sbjct: 7   PDKYTYSTLITHFGKEGLFDDALSWLQKMEHDRVRGDLXLYSNLIELSRKLCDYSKAISI 66

Query: 350 FDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCAD 409
           F  +  SG+TPD                                    ++YN+++N+   
Sbjct: 67  FSRLKRSGITPD-----------------------------------LVVYNSMINVFGK 91

Query: 410 IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVM 469
             L  EA  L  +M+      PD  SYT +L +Y        A+ +F EM E+   +++ 
Sbjct: 92  AKLFREARSLICEMRTXG-VMPDTVSYTTLLTMYVENKKFIEALSVFAEMREIKCLLDLT 150

Query: 470 GCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCL 529
            C  +I   G+     +  ++F      GV+P+      LL V S  E   +   +   +
Sbjct: 151 TCNIMIDVYGQLGMAKEADKLFWSMRKLGVEPNVVSYNTLLRVYSDAELFGEAXHLFRLM 210

Query: 530 QQAN 533
           Q+ +
Sbjct: 211 QRKD 214



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/249 (21%), Positives = 108/249 (43%), Gaps = 5/249 (2%)

Query: 142 LRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGR 201
           +R +   P+  +    L + +  + + ++   F  ++ +++     + YN  M       
Sbjct: 175 MRKLGVEPNVVSYNTLLRVYSDAELFGEAXHLFRLMQRKDI-EQNVVTYNSMMMIYGKTL 233

Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS 261
           + +    L  EM S  IE + ITYSTII+   +    D A   FE++  +G+  D+V Y 
Sbjct: 234 EHEKANNLIQEMQSRGIEPNAITYSTIISIWGKVGKLDRAAMLFEKLRSSGIEIDQVLYQ 293

Query: 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
            ++  Y ++G V       +R +     PD I      ++   SG  +   +V ++    
Sbjct: 294 TMIVAYERAGLVSHA----KRLLHELKTPDNIPRDTAIQILAGSGRMEEATWVFRQAIDA 349

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
           G   ++ V+  +++   K  K      +FD+M   G  PD   +  ++  YGK    + A
Sbjct: 350 GEVKDITVFEQMIDLFSKYRKYSNVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHDFEKA 409

Query: 382 LELWERMRE 390
            +++  M++
Sbjct: 410 NDVYLEMQD 418


>gi|298712109|emb|CBJ32990.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 650

 Score =  125 bits (314), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 93/378 (24%), Positives = 175/378 (46%), Gaps = 28/378 (7%)

Query: 142 LRAITEIPHQPTRENALL----ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSL 197
           +R +++   + TR N+ +    +  +   W++     + + +++  P+ +  YN  + S+
Sbjct: 10  VRKVSKRIARTTRHNSFISTAKVRGARGQWREVLRLLDKM-AEDGIPLNSYAYNSALSSI 68

Query: 198 RFGRQFQLIEQLANEMVSNEIELDNITYSTII-TCAKRCNLFDEAIEWFERMYKTGLMPD 256
               +++    L + M+S  + LD  T+S +I  C+K  N+  + +E    M   G+  D
Sbjct: 69  AKSGRWREALALRDRMLSEGVRLDGYTFSALIEACSKGGNVA-KGVELLREMVDAGVARD 127

Query: 257 EVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQ 316
             +Y+A L  + ++G  +  L + E  VA G +PD I +  L    G SG++     ++ 
Sbjct: 128 CFSYNAALHGFVRNGDSKNALLMLEDMVADGVRPDAITYGTLLACCGNSGEWKLCMSLMD 187

Query: 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
            M+S G+ PN   ++ L++A GK G+  LA    ++M  SG TP+E      I   G A 
Sbjct: 188 RMRSEGITPNAYSFSPLIKACGKEGRWALAVKTLEDMEASGPTPNEHNWLMAIGACGNAG 247

Query: 377 WAKDALELWERMRE-----NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
             ++AL L +++          PM   +YN  ++ CA  G  ++   L E MK +    P
Sbjct: 248 QWEEALRLIDKLEALALGGEGVPMSTTMYNFGIDACARAGRWDQGVALLERMKSNPATPP 307

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV------------AINVMG----CTCLI 475
           D  +Y+ +++      N+++A+    EM  +G+            AI V G       L+
Sbjct: 308 DAQTYSYLIDACAKDANLEDALAYLTEMRAVGLAPTFFAYISAMSAIKVAGQWKEALSLL 367

Query: 476 QCLGKARRIDDLVRVFGV 493
             + K R I D+   + V
Sbjct: 368 DEMAKGRLISDVFSFYNV 385



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 129/316 (40%), Gaps = 45/316 (14%)

Query: 184 PMETIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTII-TCAKRCNLFDEA 241
           PM T  YN  + +  R GR  Q +  L     +     D  TYS +I  CAK  NL D A
Sbjct: 270 PMSTTMYNFGIDACARAGRWDQGVALLERMKSNPATPPDAQTYSYLIDACAKDANLED-A 328

Query: 242 IEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKM 301
           + +   M   GL P    Y + +     +G+ +E LSL +         D  +F  +   
Sbjct: 329 LAYLTEMRAVGLAPTFFAYISAMSAIKVAGQWKEALSLLDEMAKGRLISDVFSFYNVVDA 388

Query: 302 FGESG----------------------------DYDGIRY-----VLQEMKSLGVQPNLV 328
           +G+ G                            D +  R      +++ M++ GV+ +++
Sbjct: 389 YGKDGQLARTLVQTSANPTEIAADSENEMRSDADLNAWRAEDPDELVKRMENNGVELDVM 448

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD-----ALE 383
            +N L++A  + G    A  L  +M   GL P+  +   +I      R   D     AL+
Sbjct: 449 SFNILIDACARGGSHWAAARLLTKMKSLGLRPNSLSYNPIIH---SCRGGTDEEWRLALD 505

Query: 384 LWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIY 443
           L + MR++    D I +NT +  CA  G    +  LF  MK+ +   PD  SY A+++  
Sbjct: 506 LLDEMRKSGLTPDVISFNTAITSCAKAGDWRRSLNLFAGMKV-EGVTPDILSYNAVISAC 564

Query: 444 GSGGNVDNAIELFEEM 459
             GG     +EL  ++
Sbjct: 565 AKGGQWRIGLELLAKV 580



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 83/339 (24%), Positives = 131/339 (38%), Gaps = 77/339 (22%)

Query: 203 FQLIEQLANEMVSNE-IELDNITYSTIITCAKRCNLFDEAIEWFERMYKT-GLMPDEVTY 260
            +LI++L    +  E + +    Y+  I    R   +D+ +   ERM       PD  TY
Sbjct: 253 LRLIDKLEALALGGEGVPMSTTMYNFGIDACARAGRWDQGVALLERMKSNPATPPDAQTY 312

Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
           S ++D  AK   +E+ L+                                    L EM++
Sbjct: 313 SYLIDACAKDANLEDALAY-----------------------------------LTEMRA 337

Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK----AR 376
           +G+ P    Y + + A+  AG+   A SL DEM +  L  D  +   ++  YGK    AR
Sbjct: 338 VGLAPTFFAYISAMSAIKVAGQWKEALSLLDEMAKGRLISDVFSFYNVVDAYGKDGQLAR 397

Query: 377 ----------------------------W-AKDALELWERMRENKWPMDFILYNTLLNMC 407
                                       W A+D  EL +RM  N   +D + +N L++ C
Sbjct: 398 TLVQTSANPTEIAADSENEMRSDADLNAWRAEDPDELVKRMENNGVELDVMSFNILIDAC 457

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDN----AIELFEEMSELG 463
           A  G    A RL   MK S   +P++ SY  +  I+   G  D     A++L +EM + G
Sbjct: 458 ARGGSHWAAARLLTKMK-SLGLRPNSLSYNPI--IHSCRGGTDEEWRLALDLLDEMRKSG 514

Query: 464 VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           +  +V+     I    KA      + +F      GV PD
Sbjct: 515 LTPDVISFNTAITSCAKAGDWRRSLNLFAGMKVEGVTPD 553


>gi|42408236|dbj|BAD09393.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|125601932|gb|EAZ41257.1| hypothetical protein OsJ_25765 [Oryza sativa Japonica Group]
          Length = 798

 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 86/316 (27%), Positives = 144/316 (45%), Gaps = 9/316 (2%)

Query: 183 FPMETIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEA 241
           +P + + YN  +  L R GRQ      L ++M+   +  D +TY++II+   +    D+A
Sbjct: 198 YPPDVVSYNTVINGLLREGRQLDTAYHLFDQMLDQGLSPDVVTYNSIISALSKARAMDKA 257

Query: 242 IEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKM 301
                RM K G MP+ +T++++L  Y  SGK  + + +++R    G +PD   ++ L   
Sbjct: 258 AVVLVRMVKNGAMPNRITHNSLLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLMGY 317

Query: 302 FGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD 361
             ++G     R +   M   G +PN   Y TLL      G       L D MV +G+ PD
Sbjct: 318 LCKNGRSMEARKIFDSMVKRGHKPNSATYGTLLHGYATEGSLVKMHHLLDMMVRNGIQPD 377

Query: 362 EKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFE 421
                 LI  Y K     DA+ L+ +MR      D + Y  +++    +G V++A   F 
Sbjct: 378 HYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDALCMVGKVDDAMAQFG 437

Query: 422 DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN------VMGCTCLI 475
            + +S+   PD   +  +++   +    D A EL  EM   G+  N      ++   C  
Sbjct: 438 RL-ISEGLTPDAVVFRNLIHGLCARDKWDKAEELAVEMIGRGICPNNIFFNTLLNHLCKE 496

Query: 476 QCLGKARRIDDL-VRV 490
             + +A+ I DL VRV
Sbjct: 497 GMVARAKNIFDLMVRV 512



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 135/297 (45%), Gaps = 36/297 (12%)

Query: 206 IEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
           +  L + MV N I+ D+  ++ +I    +    D+A+  F +M + GL PD VTY  ++D
Sbjct: 362 MHHLLDMMVRNGIQPDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMD 421

Query: 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325
                GKV++ ++ + R ++ G  PD + F  L         +D    +  EM   G+ P
Sbjct: 422 ALCMVGKVDDAMAQFGRLISEGLTPDAVVFRNLIHGLCARDKWDKAEELAVEMIGRGICP 481

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
           N + +NTLL  + K G    A+++FD MV   +  D                        
Sbjct: 482 NNIFFNTLLNHLCKEGMVARAKNIFDLMVRVDVQRD------------------------ 517

Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445
                       I YNTL++     G V+EA +L E M L D  KP+  +Y  M+N Y  
Sbjct: 518 -----------VITYNTLIDGYCLHGKVDEAAKLLEGMVL-DGVKPNEVTYNTMINGYCK 565

Query: 446 GGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            G +++A  LF +M+  GV   ++  + ++Q L +ARR      ++   I  G+K D
Sbjct: 566 NGRIEDAFSLFRQMASKGVNPGIVTYSTILQGLFQARRTAAAKELYLWMIKSGIKFD 622



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 81/368 (22%), Positives = 153/368 (41%), Gaps = 49/368 (13%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           ITYS +I C  R    D A     R+ ++G   + +T+S +L       +  E + +  R
Sbjct: 92  ITYSVVIDCCSRVGHLDLAFAALGRVIRSGWTAEAITFSPLLKALCDKKRTSEAMDIALR 151

Query: 283 GVA-----------------------------------------SGWKPDPIAF-SVLGK 300
            +                                           G+ PD +++ +V+  
Sbjct: 152 RMPVLGCTPNVFSYTILLKGLCDENRSQQALHLLHTMMVADDTRGGYPPDVVSYNTVING 211

Query: 301 MFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTP 360
           +  E    D   ++  +M   G+ P++V YN+++ A+ KA     A  +   MV++G  P
Sbjct: 212 LLREGRQLDTAYHLFDQMLDQGLSPDVVTYNSIISALSKARAMDKAAVVLVRMVKNGAMP 271

Query: 361 DEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLF 420
           +  T  +L+  Y  +    DA+ +++RM  +    D   YNTL+      G   EA ++F
Sbjct: 272 NRITHNSLLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLMGYLCKNGRSMEARKIF 331

Query: 421 EDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK 480
           + M    + KP++ +Y  +L+ Y + G++     L + M   G+  +      LI    K
Sbjct: 332 DSMVKRGH-KPNSATYGTLLHGYATEGSLVKMHHLLDMMVRNGIQPDHYIFNILIGTYTK 390

Query: 481 ARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDV----GKVITCLQQANPKL 536
             ++DD + +F     +G+ PD    G ++  + +    +D     G++I+  +   P  
Sbjct: 391 HGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDALCMVGKVDDAMAQFGRLIS--EGLTPDA 448

Query: 537 VAFLNLIE 544
           V F NLI 
Sbjct: 449 VVFRNLIH 456



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 148/304 (48%), Gaps = 10/304 (3%)

Query: 170 SYFFFNWIKSQNLFPMETIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           +   F+ ++ Q L P +T+ Y + M +L   G+    + Q    ++S  +  D + +  +
Sbjct: 397 AMLLFSKMRRQGLNP-DTVTYGIVMDALCMVGKVDDAMAQFG-RLISEGLTPDAVVFRNL 454

Query: 229 IT--CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           I   CA+  + +D+A E    M   G+ P+ + ++ +L+   K G V    ++++  V  
Sbjct: 455 IHGLCAR--DKWDKAEELAVEMIGRGICPNNIFFNTLLNHLCKEGMVARAKNIFDLMVRV 512

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
             + D I ++ L   +   G  D    +L+ M   GV+PN V YNT++    K G+   A
Sbjct: 513 DVQRDVITYNTLIDGYCLHGKVDEAAKLLEGMVLDGVKPNEVTYNTMINGYCKNGRIEDA 572

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT-LLN 405
            SLF +M   G+ P   T + +++   +AR    A EL+  M ++    D   YN  LL 
Sbjct: 573 FSLFRQMASKGVNPGIVTYSTILQGLFQARRTAAAKELYLWMIKSGIKFDIGTYNIILLG 632

Query: 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
           +C +    ++A R+F+++ L D+   +N ++  M++    GG  D A +LF  +   G+ 
Sbjct: 633 LCQN-NCTDDALRIFQNLYLIDF-HLENRTFNIMIDALLKGGRHDEAKDLFASLLARGLV 690

Query: 466 INVM 469
            NV+
Sbjct: 691 PNVV 694



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/271 (26%), Positives = 135/271 (49%), Gaps = 10/271 (3%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           F  + S+ L P   +F N+ +  L    ++   E+LA EM+   I  +NI ++T++    
Sbjct: 436 FGRLISEGLTPDAVVFRNL-IHGLCARDKWDKAEELAVEMIGRGICPNNIFFNTLLNHLC 494

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
           +  +   A   F+ M +  +  D +TY+ ++D Y   GKV+E   L E  V  G KP+ +
Sbjct: 495 KEGMVARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDEAAKLLEGMVLDGVKPNEV 554

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
            ++ +   + ++G  +    + ++M S GV P +V Y+T+L+ + +A +   A+ L+  M
Sbjct: 555 TYNTMINGYCKNGRIEDAFSLFRQMASKGVNPGIVTYSTILQGLFQARRTAAAKELYLWM 614

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI--- 410
           ++SG+  D  T   ++    +     DAL ++    +N + +DF L N   N+  D    
Sbjct: 615 IKSGIKFDIGTYNIILLGLCQNNCTDDALRIF----QNLYLIDFHLENRTFNIMIDALLK 670

Query: 411 -GLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
            G  +EA+ LF  + L+    P+  +Y  M+
Sbjct: 671 GGRHDEAKDLFASL-LARGLVPNVVTYWLMM 700



 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/280 (24%), Positives = 128/280 (45%), Gaps = 11/280 (3%)

Query: 241 AIEWFERMYKTG---LMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS- 296
           AI  F RM       + P+ +TYS ++D  ++ G ++   +   R + SGW  + I FS 
Sbjct: 72  AISLFRRMVMVARPKVPPNLITYSVVIDCCSRVGHLDLAFAALGRVIRSGWTAEAITFSP 131

Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMV-- 354
           +L  +  +    + +   L+ M  LG  PN+  Y  LL+ +    +   A  L   M+  
Sbjct: 132 LLKALCDKKRTSEAMDIALRRMPVLGCTPNVFSYTILLKGLCDENRSQQALHLLHTMMVA 191

Query: 355 ---ESGLTPDEKTLTALIK-IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
                G  PD  +   +I  +  + R    A  L+++M +     D + YN++++  +  
Sbjct: 192 DDTRGGYPPDVVSYNTVINGLLREGRQLDTAYHLFDQMLDQGLSPDVVTYNSIISALSKA 251

Query: 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG 470
             +++A  +   M + +   P+  ++ ++L+ Y S G  ++AI +F+ M   GV  +V  
Sbjct: 252 RAMDKAAVVLVRM-VKNGAMPNRITHNSLLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFT 310

Query: 471 CTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
              L+  L K  R  +  ++F   + RG KP+    G LL
Sbjct: 311 YNTLMGYLCKNGRSMEARKIFDSMVKRGHKPNSATYGTLL 350



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 115/274 (41%), Gaps = 40/274 (14%)

Query: 135 DNTEEAFLRAITE--IPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNV 192
           D+    F R I+E   P      N +  L +   W K+      +  + + P   IF+N 
Sbjct: 430 DDAMAQFGRLISEGLTPDAVVFRNLIHGLCARDKWDKAEELAVEMIGRGICP-NNIFFNT 488

Query: 193 TMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTG 252
            +  L         + + + MV  +++ D ITY+T+I         DEA +  E M   G
Sbjct: 489 LLNHLCKEGMVARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDEAAKLLEGMVLDG 548

Query: 253 LMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS-VLGKMFG-------- 303
           + P+EVTY+ +++ Y K+G++E+  SL+ +  + G  P  + +S +L  +F         
Sbjct: 549 VKPNEVTYNTMINGYCKNGRIEDAFSLFRQMASKGVNPGIVTYSTILQGLFQARRTAAAK 608

Query: 304 -------------ESGDY--------------DGIRYVLQEMKSLGVQPNLVVYNTLLEA 336
                        + G Y              D +R + Q +  +        +N +++A
Sbjct: 609 ELYLWMIKSGIKFDIGTYNIILLGLCQNNCTDDALR-IFQNLYLIDFHLENRTFNIMIDA 667

Query: 337 MGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK 370
           + K G+   A+ LF  ++  GL P+  T   ++K
Sbjct: 668 LLKGGRHDEAKDLFASLLARGLVPNVVTYWLMMK 701



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/222 (18%), Positives = 101/222 (45%), Gaps = 1/222 (0%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           + ++  F  + S+ + P   + Y+  ++ L   R+    ++L   M+ + I+ D  TY+ 
Sbjct: 570 EDAFSLFRQMASKGVNP-GIVTYSTILQGLFQARRTAAAKELYLWMIKSGIKFDIGTYNI 628

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           I+    + N  D+A+  F+ +Y      +  T++ ++D   K G+ +E   L+   +A G
Sbjct: 629 ILLGLCQNNCTDDALRIFQNLYLIDFHLENRTFNIMIDALLKGGRHDEAKDLFASLLARG 688

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
             P+ + + ++ K   E G  + +  +   ++  G   N  + N L+  + + G+   A 
Sbjct: 689 LVPNVVTYWLMMKSLIEQGLLEELDDLFLSLEKNGCTANSRMLNALVGKLLQKGEVRKAG 748

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMR 389
               ++ E+  + +  T  +L+ +    ++ +    + E+ R
Sbjct: 749 VYLSKIDENNFSLEASTAESLVLLVSSGKYDQHINAIPEKYR 790


>gi|334182516|ref|NP_172730.3| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
 gi|332190794|gb|AEE28915.1| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
          Length = 735

 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 157/317 (49%), Gaps = 1/317 (0%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + YN  +  +       L   L  +M    ++ D  TYSTII    R    D AI  F
Sbjct: 192 DVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLF 251

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           + M   G+    VTY++++    K+GK  +   L +  V+    P+ I F+VL  +F + 
Sbjct: 252 KEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKE 311

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G       + +EM + G+ PN++ YNTL++      +   A ++ D MV +  +PD  T 
Sbjct: 312 GKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTF 371

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
           T+LIK Y   +   D ++++  + +     + + Y+ L+      G ++ AE LF++M +
Sbjct: 372 TSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEM-V 430

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
           S    PD  +Y  +L+     G ++ A+E+FE++ +  + + ++  T +I+ + K  +++
Sbjct: 431 SHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVE 490

Query: 486 DLVRVFGVSIDRGVKPD 502
           D   +F     +GVKP+
Sbjct: 491 DAWNLFCSLPCKGVKPN 507



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/335 (25%), Positives = 157/335 (46%), Gaps = 7/335 (2%)

Query: 219 ELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS 278
           E D  T++T+I          EA+   +RM + G  PD VTY++I++   +SG     L 
Sbjct: 155 EPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALD 214

Query: 279 LYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMG 338
           L  +      K D   +S +       G  D    + +EM++ G++ ++V YN+L+  + 
Sbjct: 215 LLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLC 274

Query: 339 KAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFI 398
           KAGK      L  +MV   + P+  T   L+ ++ K    ++A EL++ M       + I
Sbjct: 275 KAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNII 334

Query: 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458
            YNTL++       + EA  +  D+ + + C PD  ++T+++  Y     VD+ +++F  
Sbjct: 335 TYNTLMDGYCMQNRLSEANNML-DLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRN 393

Query: 459 MSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCET 518
           +S+ G+  N +  + L+Q   ++ +I     +F   +  GV PD    G LL    LC+ 
Sbjct: 394 ISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLD--GLCDN 451

Query: 519 S--EDVGKVITCLQQANPKL--VAFLNLIEDNSTG 549
              E   ++   LQ++   L  V +  +IE    G
Sbjct: 452 GKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKG 486



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 113/237 (47%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           I YN  M       +      + + MV N+   D +T++++I         D+ ++ F  
Sbjct: 334 ITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRN 393

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           + K GL+ + VTYS ++  + +SGK++    L++  V+ G  PD + + +L     ++G 
Sbjct: 394 ISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGK 453

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
            +    + ++++   +   +V+Y T++E M K GK   A +LF  +   G+ P+  T T 
Sbjct: 454 LEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTV 513

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
           +I    K     +A  L  +M E+    +   YNTL+      G +  + +L E+MK
Sbjct: 514 MISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMK 570



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/247 (20%), Positives = 113/247 (45%), Gaps = 1/247 (0%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           + +S   +   R   F+  +++ +++   G+  +  T + +++ + +  K     S+  +
Sbjct: 89  VDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGK 148

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
            +  G++PD   F+ L K     G       ++  M   G QP++V YN+++  + ++G 
Sbjct: 149 VMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGD 208

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
             LA  L  +M E  +  D  T + +I    +      A+ L++ M         + YN+
Sbjct: 209 TSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNS 268

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
           L+      G   +   L +DM +S    P+  ++  +L+++   G +  A EL++EM   
Sbjct: 269 LVRGLCKAGKWNDGALLLKDM-VSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITR 327

Query: 463 GVAINVM 469
           G++ N++
Sbjct: 328 GISPNII 334



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 91/184 (49%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           + Y++ ++      + +L E+L  EMVS+ +  D +TY  ++         ++A+E FE 
Sbjct: 404 VTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFED 463

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           + K+ +    V Y+ I++   K GKVE+  +L+      G KP+ + ++V+     + G 
Sbjct: 464 LQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGS 523

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
                 +L++M+  G  PN   YNTL+ A  + G    +  L +EM   G + D  ++  
Sbjct: 524 LSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKM 583

Query: 368 LIKI 371
           +I +
Sbjct: 584 VIDM 587



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 112/242 (46%), Gaps = 6/242 (2%)

Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
           S I+D+     K ++ ++L++  + S   P  + FS        +  ++ +    ++++ 
Sbjct: 62  SGIVDI-----KKDDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLEL 116

Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380
            G+  N+   N ++    +  K   A S+  ++++ G  PD  T   LIK         +
Sbjct: 117 NGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSE 176

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
           A+ L +RM EN    D + YN+++N     G    A  L   M+  +  K D ++Y+ ++
Sbjct: 177 AVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNV-KADVFTYSTII 235

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
           +     G +D AI LF+EM   G+  +V+    L++ L KA + +D   +    + R + 
Sbjct: 236 DSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIV 295

Query: 501 PD 502
           P+
Sbjct: 296 PN 297



 Score = 45.1 bits (105), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 35/171 (20%), Positives = 76/171 (44%), Gaps = 5/171 (2%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F  + S  + P + + Y + +  L    + +   ++  ++  ++++L  + Y+TII   
Sbjct: 425 LFQEMVSHGVLP-DVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGM 483

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +    ++A   F  +   G+ P+ +TY+ ++    K G + E   L  +    G  P+ 
Sbjct: 484 CKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPND 543

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL----VVYNTLLEAMGK 339
             ++ L +     GD      +++EMKS G   +     +V + LL AM +
Sbjct: 544 CTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDMLLSAMKR 594


>gi|302770855|ref|XP_002968846.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
 gi|300163351|gb|EFJ29962.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
          Length = 538

 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 92/366 (25%), Positives = 179/366 (48%), Gaps = 11/366 (3%)

Query: 159 LILNSLKFWQKSYF---FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVS 215
           ++LN L    K+      F  +K     P   I Y   ++ L    +     ++  E  S
Sbjct: 128 ILLNGLCRSNKTKLAREVFQEMKRNGCKP-NPITYGTLIQHLSRAGEIDEALRVMIEQRS 186

Query: 216 NEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEE 275
            E+  D IT +TI+    + +  D+A+++ E M + G+ P+EVTYS ++  + + G+++ 
Sbjct: 187 LELPTDVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFRQHGELDR 246

Query: 276 VLSLYERGVA-SGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLL 334
           V+  +E   A  G   +  A+        ++G  D  R  ++E++  GV P++V Y+ L+
Sbjct: 247 VIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVVTYSMLI 306

Query: 335 EAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWP 394
               +AG+   +  L ++M  +G+ PD  T + LI +  K R  +DA  L E M     P
Sbjct: 307 NTFARAGQFDASLELLEDMRRNGVKPDVVTYSTLINVLCKERKFQDAFRLLELMEAAGSP 366

Query: 395 MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIE 454
            + + YN++++     G ++E  R++E M L   C PD  +Y+ ++N     G +D+A++
Sbjct: 367 PNVVTYNSVMDGLCKSGKMDEVHRVYE-MMLKSRCSPDVVTYSIIMNGLSKAGMLDSAVK 425

Query: 455 LFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF-GVSIDRGVKPDDRLCGCLLSVV 513
           LFE +       +    + +I  L +A ++++   ++ G+ +       D +C  L  +V
Sbjct: 426 LFELIKSSREGPDAAAYSMVITSLCRAGKLEEACGMYHGMEV---TVAGDNICRALAGLV 482

Query: 514 -SLCET 518
            +LC+ 
Sbjct: 483 AALCDA 488



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/306 (22%), Positives = 144/306 (47%), Gaps = 4/306 (1%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           F   ++   + P E  + N+     + G   ++I     E       L+   Y   +   
Sbjct: 215 FMEEMRQMGVRPNEVTYSNLVHGFRQHGELDRVIRFFEEEKARKGGSLEAAAYPGYLDAL 274

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +    D A +  E + ++G++PD VTYS +++ +A++G+ +  L L E    +G KPD 
Sbjct: 275 CKAGYLDRARKSVEELRQSGVVPDVVTYSMLINTFARAGQFDASLELLEDMRRNGVKPDV 334

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           + +S L  +  +   +     +L+ M++ G  PN+V YN++++ + K+GK      +++ 
Sbjct: 335 VTYSTLINVLCKERKFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKSGKMDEVHRVYEM 394

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M++S  +PD  T + ++    KA     A++L+E ++ ++   D   Y+ ++      G 
Sbjct: 395 MLKSRCSPDVVTYSIIMNGLSKAGMLDSAVKLFELIKSSREGPDAAAYSMVITSLCRAGK 454

Query: 413 VEEAERLFEDMKLSDYCKPDNY--SYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG 470
           +EEA  ++  M+++     DN   +   ++         D+A  + E  SE G  +   G
Sbjct: 455 LEEACGMYHGMEVT--VAGDNICRALAGLVAALCDAERTDSARRIVEVASERGHRMTKSG 512

Query: 471 CTCLIQ 476
            T L++
Sbjct: 513 DTDLVK 518



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/336 (22%), Positives = 135/336 (40%), Gaps = 36/336 (10%)

Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS 261
           +F  + +L   + S  +     TY  ++       + ++A+E    +      P    Y+
Sbjct: 34  KFSEVVRLFTLLASRGVVYGETTYKLVVDGLCGAGMANQALELVRELSGV-YTPTLFIYN 92

Query: 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
            I+    ++ +V +   + E+ V     P+   +++L      S      R V QEMK  
Sbjct: 93  GIITGLCRASRVMDAYKVLEKMVEESIVPNVFTYTILLNGLCRSNKTKLAREVFQEMKRN 152

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
           G +PN + Y TL++ + +AG+   A  +  E     L  D  T T ++    KA    DA
Sbjct: 153 GCKPNPITYGTLIQHLSRAGEIDEALRVMIEQRSLELPTDVITCTTIVGGLCKASRLDDA 212

Query: 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK---------------LS 426
           L+  E MR+     + + Y+ L++     G ++   R FE+ K               L 
Sbjct: 213 LKFMEEMRQMGVRPNEVTYSNLVHGFRQHGELDRVIRFFEEEKARKGGSLEAAAYPGYLD 272

Query: 427 DYCK--------------------PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
             CK                    PD  +Y+ ++N +   G  D ++EL E+M   GV  
Sbjct: 273 ALCKAGYLDRARKSVEELRQSGVVPDVVTYSMLINTFARAGQFDASLELLEDMRRNGVKP 332

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           +V+  + LI  L K R+  D  R+  +    G  P+
Sbjct: 333 DVVTYSTLINVLCKERKFQDAFRLLELMEAAGSPPN 368


>gi|359482557|ref|XP_002277683.2| PREDICTED: pentatricopeptide repeat-containing protein At5g39710
           [Vitis vinifera]
          Length = 990

 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 167/352 (47%), Gaps = 33/352 (9%)

Query: 183 FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
           + ++   YN+ + +L    +   +  +  +M     E D  TY+ +I    +    DE++
Sbjct: 73  YKLDIFAYNMLLDALAKDNKVDQVYMVFKDMKRKHCEPDEYTYTIMIRMTGKIGKADESL 132

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
             F+ M + G  P+ + Y+ ++   A +  V++ + L+ + V +  +P+   FSV+  + 
Sbjct: 133 TLFQEMTEKGYTPNLIAYNTMIQALANNRMVDKTIFLFSKMVENNCRPNGFTFSVILNVL 192

Query: 303 ---GESGDYDGI-------------RYVLQEMKSLGV----------------QPNLVVY 330
              G+ G  D +              Y+++ +  LG                 + +   Y
Sbjct: 193 VAEGQLGRLDEVVEVSNKFMNKSIYAYLVRTLSKLGHASEAHRLFCNMWSFHDEGDRDAY 252

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
            ++LE++  AGK   A  L  ++ E  ++ D      ++   GK +   D  +L+E+M++
Sbjct: 253 MSMLESLCDAGKTTEALDLLSKIHEKRISTDTVMYNTVLSALGKLKKTSDLHDLYEKMKQ 312

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
           +    D   YN L++     G VEEA ++FE+++ S  CKPD  S+ +++N  G  G++D
Sbjct: 313 DGPSPDIFSYNILISSFGRAGRVEEAVKIFEELENSS-CKPDIISFNSLINCLGKNGDID 371

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            A   F+EM E G++ +V+  + LI+C GK  +++   R+F   +  G  P+
Sbjct: 372 EAHMRFKEMREEGLSPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCSPN 423



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 106/195 (54%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L +++    I  D + Y+T+++   +     +  + +E+M + G  PD  +Y+ ++  + 
Sbjct: 271 LLSKIHEKRISTDTVMYNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDIFSYNILISSFG 330

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           ++G+VEE + ++E    S  KPD I+F+ L    G++GD D      +EM+  G+ P++V
Sbjct: 331 RAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEMREEGLSPDVV 390

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            Y+TL+E  GK  K  +A  LFDEM+  G +P+  T   L+    ++    +A++L+ ++
Sbjct: 391 TYSTLIECFGKTDKVEMACRLFDEMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKL 450

Query: 389 RENKWPMDFILYNTL 403
           ++     D I Y  L
Sbjct: 451 KQQGLTPDSITYAVL 465



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 158/332 (47%), Gaps = 12/332 (3%)

Query: 217 EIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV 276
           +++++  TY  ++    R N  ++A E +  + + G   D   Y+ +LD  AK  KV++V
Sbjct: 37  DLQMNCYTYKCLLQAHLRSNNSNKAFEVYVELRRRGYKLDIFAYNMLLDALAKDNKVDQV 96

Query: 277 LSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA 336
             +++       +PD   ++++ +M G+ G  D    + QEM   G  PNL+ YNT+++A
Sbjct: 97  YMVFKDMKRKHCEPDEYTYTIMIRMTGKIGKADESLTLFQEMTEKGYTPNLIAYNTMIQA 156

Query: 337 MGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIY---GKARWAKDALELWERMRENKW 393
           +           LF +MVE+   P+  T + ++ +    G+     + +E+      NK+
Sbjct: 157 LANNRMVDKTIFLFSKMVENNCRPNGFTFSVILNVLVAEGQLGRLDEVVEV-----SNKF 211

Query: 394 PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAI 453
            M+  +Y  L+   + +G   EA RLF +M  S + + D  +Y +ML      G    A+
Sbjct: 212 -MNKSIYAYLVRTLSKLGHASEAHRLFCNM-WSFHDEGDRDAYMSMLESLCDAGKTTEAL 269

Query: 454 ELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVV 513
           +L  ++ E  ++ + +    ++  LGK ++  DL  ++      G  PD      L+S  
Sbjct: 270 DLLSKIHEKRISTDTVMYNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDIFSYNILISSF 329

Query: 514 SLCETSEDVGKVITCLQQAN--PKLVAFLNLI 543
                 E+  K+   L+ ++  P +++F +LI
Sbjct: 330 GRAGRVEEAVKIFEELENSSCKPDIISFNSLI 361



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 100/200 (50%), Gaps = 1/200 (0%)

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           EA++   ++++  +  D V Y+ +L    K  K  ++  LYE+    G  PD  ++++L 
Sbjct: 267 EALDLLSKIHEKRISTDTVMYNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDIFSYNILI 326

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
             FG +G  +    + +E+++   +P+++ +N+L+  +GK G    A   F EM E GL+
Sbjct: 327 SSFGRAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEMREEGLS 386

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
           PD  T + LI+ +GK    + A  L++ M       + + YN LL+     G   EA  L
Sbjct: 387 PDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCSPNIVTYNILLDCLERSGRTAEAVDL 446

Query: 420 FEDMKLSDYCKPDNYSYTAM 439
           +  +K      PD+ +Y  +
Sbjct: 447 YAKLKQQG-LTPDSITYAVL 465



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 97/186 (52%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           +T+ YN  + +L   ++   +  L  +M  +    D  +Y+ +I+   R    +EA++ F
Sbjct: 283 DTVMYNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDIFSYNILISSFGRAGRVEEAVKIF 342

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           E +  +   PD ++++++++   K+G ++E    ++     G  PD + +S L + FG++
Sbjct: 343 EELENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEMREEGLSPDVVTYSTLIECFGKT 402

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
              +    +  EM + G  PN+V YN LL+ + ++G+   A  L+ ++ + GLTPD  T 
Sbjct: 403 DKVEMACRLFDEMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSITY 462

Query: 366 TALIKI 371
             L ++
Sbjct: 463 AVLERL 468


>gi|346703131|emb|CBX25230.1| hypothetical_protein [Oryza brachyantha]
          Length = 746

 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 86/341 (25%), Positives = 155/341 (45%), Gaps = 36/341 (10%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           +T+ YN  +  L  G + +L+E + +EM    I+ D +T++T++    R +    A+   
Sbjct: 149 DTVVYNHLLNVLVEGSKMKLLETVYSEMGERGIKPDVVTFNTLMKALCRAHQVRTAVLML 208

Query: 246 ERMYKTGLMPDEVTYSAIL-----------------------------------DVYAKS 270
           E M  +G+ PDE T++ ++                                   + Y K 
Sbjct: 209 EEMSSSGVAPDETTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPTKVTVNVLINGYCKL 268

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
           G+VE+ L   ++ +A+G++PD I ++       ++G       V+  M   G  P++  Y
Sbjct: 269 GRVEDALGYIQQEIANGFEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTY 328

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
           N ++  + K G+   A+ + ++MVE G  PD  T   LI         ++AL+L  ++  
Sbjct: 329 NIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTL 388

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
                D   +N L+N    +G  + A RLFE+MK S  C PD  +Y  +++   S G + 
Sbjct: 389 KGLSPDVYTFNILINALCKVGDPQLALRLFEEMK-SSGCTPDEVTYNTLIDNLCSLGKLG 447

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
            A++L +EM   G   + +    +I  L K  RI++   VF
Sbjct: 448 KALDLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVF 488



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/340 (25%), Positives = 158/340 (46%), Gaps = 5/340 (1%)

Query: 147 EIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQ--NLFPMETIFYNVTMKSLRFGRQFQ 204
           E+   PT+    +++N      +      +I+ +  N F  + I YN  +  L       
Sbjct: 248 EMGCSPTKVTVNVLINGYCKLGRVEDALGYIQQEIANGFEPDQITYNTFVNGLCQNGHVG 307

Query: 205 LIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAIL 264
              ++ + MV    + D  TY+ ++ C  +    +EA     +M + G +PD  T++ ++
Sbjct: 308 HALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLI 367

Query: 265 DVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQ 324
                  ++EE L L  +    G  PD   F++L     + GD      + +EMKS G  
Sbjct: 368 VALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCT 427

Query: 325 PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384
           P+ V YNTL++ +   GK G A  L  EM  +G      T   +I    K    ++A E+
Sbjct: 428 PDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEV 487

Query: 385 WERMRENKWPMDFILYNTLLN-MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIY 443
           +++M       + I +NTL++ +C D   +++A +L   M +S+  +P+N +Y ++L  Y
Sbjct: 488 FDQMDLQGISRNAITFNTLIDGLCKD-KRIDDANQLISQM-ISEGLQPNNITYNSILTHY 545

Query: 444 GSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483
              G++  A ++ + M+  G  ++V+    LI  L KA R
Sbjct: 546 CKQGDIKKAADILQTMTANGFEVDVVTYGTLINGLCKAGR 585



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/281 (24%), Positives = 138/281 (49%), Gaps = 1/281 (0%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           +T + +I    +    ++A+ + ++    G  PD++TY+  ++   ++G V   L + + 
Sbjct: 256 VTVNVLINGYCKLGRVEDALGYIQQEIANGFEPDQITYNTFVNGLCQNGHVGHALKVMDV 315

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
            V  G  PD   ++++     ++G  +  + +L +M   G  P++  +NTL+ A+    +
Sbjct: 316 MVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNR 375

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
              A  L  ++   GL+PD  T   LI    K    + AL L+E M+ +    D + YNT
Sbjct: 376 LEEALDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNT 435

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
           L++    +G + +A  L ++M+ S  C     +Y  +++       ++ A E+F++M   
Sbjct: 436 LIDNLCSLGKLGKALDLLKEME-SAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQ 494

Query: 463 GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
           G++ N +    LI  L K +RIDD  ++    I  G++P++
Sbjct: 495 GISRNAITFNTLIDGLCKDKRIDDANQLISQMISEGLQPNN 535



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 82/360 (22%), Positives = 154/360 (42%), Gaps = 15/360 (4%)

Query: 145 ITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQ 204
           +T +  QP  + AL +LN+             +  ++  P   ++  +  K         
Sbjct: 48  LTALREQPDPDAALRMLNA------------ALAREDFAPGPEVYEEIIRKLGAAAGAAD 95

Query: 205 LIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKT--GLMPDEVTYSA 262
           L++ L  EM     ++      + +    R  LF +A++          G+  D V Y+ 
Sbjct: 96  LMKVLVTEMRREGHQVRVGVVHSFLESYARQQLFVDAVDLVLNQLDPLFGIQADTVVYNH 155

Query: 263 ILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG 322
           +L+V  +  K++ + ++Y      G KPD + F+ L K    +        +L+EM S G
Sbjct: 156 LLNVLVEGSKMKLLETVYSEMGERGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSSG 215

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382
           V P+   + TL++   + G    A  +   M+E G +P + T+  LI  Y K    +DAL
Sbjct: 216 VAPDETTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPTKVTVNVLINGYCKLGRVEDAL 275

Query: 383 ELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNI 442
              ++   N +  D I YNT +N     G V  A ++  D+ + +   PD ++Y  ++N 
Sbjct: 276 GYIQQEIANGFEPDQITYNTFVNGLCQNGHVGHALKVM-DVMVQEGHDPDVFTYNIVVNC 334

Query: 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
               G ++ A  +  +M E G   ++     LI  L    R+++ + +      +G+ PD
Sbjct: 335 LCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPD 394



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 75/305 (24%), Positives = 139/305 (45%), Gaps = 16/305 (5%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSL----RFGRQFQLIEQLANEMVSNEIELDNI 223
           Q +   F  +KS    P E + YN  + +L    + G+   L++    EM S       +
Sbjct: 412 QLALRLFEEMKSSGCTPDE-VTYNTLIDNLCSLGKLGKALDLLK----EMESAGCPRSTV 466

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           TY+TII    +    +EA E F++M   G+  + +T++ ++D   K  ++++   L  + 
Sbjct: 467 TYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKRIDDANQLISQM 526

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
           ++ G +P+ I ++ +   + + GD      +LQ M + G + ++V Y TL+  + KAG+ 
Sbjct: 527 ISEGLQPNNITYNSILTHYCKQGDIKKAADILQTMTANGFEVDVVTYGTLINGLCKAGRT 586

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
            +A  L   M   G+    K    +I+   +    +DA+ L+  M E   P D   Y  +
Sbjct: 587 QVALKLLRGMRIKGMRATPKAYNPVIQSLFRRNNTRDAMNLFREMTEVGEPPDAFTYKIV 646

Query: 404 L-NMCADIGLVEEAERLFEDMKLSDYCKPDNYSY----TAMLNIYGSGGNVDNAIELFEE 458
              +C   G + EA     +M    +  P+  S+      +LN+ G       AIE+  E
Sbjct: 647 FRGLCRGGGSIREAFDFLLEMVDKGFI-PEFSSFRMLAEGLLNL-GMDDYFIRAIEIIIE 704

Query: 459 MSELG 463
            ++LG
Sbjct: 705 KADLG 709



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 116/275 (42%), Gaps = 2/275 (0%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           +N+ + +L      QL  +L  EM S+    D +TY+T+I          +A++  + M 
Sbjct: 398 FNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEME 457

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
             G     VTY+ I+D   K  ++EE   ++++    G   + I F+ L     +    D
Sbjct: 458 SAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKRID 517

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               ++ +M S G+QPN + YN++L    K G    A  +   M  +G   D  T   LI
Sbjct: 518 DANQLISQMISEGLQPNNITYNSILTHYCKQGDIKKAADILQTMTANGFEVDVVTYGTLI 577

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
               KA   + AL+L   MR          YN ++          +A  LF +M      
Sbjct: 578 NGLCKAGRTQVALKLLRGMRIKGMRATPKAYNPVIQSLFRRNNTRDAMNLFREMTEVGE- 636

Query: 430 KPDNYSYTAML-NIYGSGGNVDNAIELFEEMSELG 463
            PD ++Y  +   +   GG++  A +   EM + G
Sbjct: 637 PPDAFTYKIVFRGLCRGGGSIREAFDFLLEMVDKG 671


>gi|299471535|emb|CBN80021.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 607

 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 111/451 (24%), Positives = 201/451 (44%), Gaps = 23/451 (5%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           W+ +      + ++++ P   I YN  + S     Q+++   L  EM +  +  D I+YS
Sbjct: 119 WKIALDLLREMLARDVTP-NVIIYNSAINSCAKAGQWEIAVSLVKEMATVGLAPDVISYS 177

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           + I+   R   ++EA+E FE M  +G+ PD +TY + +   A  G+ +E +SL  +    
Sbjct: 178 SAISACGRGGRWEEALELFEDMRTSGVAPDVITYGSAIAACANGGRWKEAVSLLRKIPTV 237

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G  P+ I++S +     + G +     +L+EMK++ + PN++ YN  ++A  K G+   A
Sbjct: 238 GLTPNVISYSSVITACAKEGQWKIALDLLREMKAMRLAPNIITYNAAIDACAKGGRWKEA 297

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKA-RWAKDALELWERMRENKWPMDFILYNTLLN 405
             L  EM   GL PD  + +++I    K  RW K+A+++   M       + I YN+ ++
Sbjct: 298 IDLLREMPTVGLPPDVVSYSSVIDACSKGDRW-KEAIDILREMPTVGLSPNAISYNSAID 356

Query: 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
            CA  G  +EA+ L  +M  +   +     Y + +     G     A+ L  EM  +G+ 
Sbjct: 357 ACAKGGQWKEAKGLLREMPTAGVTQ-RVIGYNSAIAACAKGEQWKEALALLREMPTVGLH 415

Query: 466 INVMGCTCLIQCLGKAR---RIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDV 522
             V   +  I   GK     +  +L+R        G+ P++    C  S +  C   +  
Sbjct: 416 TTVFSYSSAIDACGKGNLWIKAKELLREMATV---GLAPNEV---CYNSAIDACGRGDQW 469

Query: 523 GKVITCLQQA-----NPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRP--FC-N 574
            + +  L++      +P + ++ + I   + G +  KE    V+K+       P   C N
Sbjct: 470 EEAVDLLREMPTVGLSPDVFSYSSAIAACAKG-DQWKEAL-AVLKEMSAAGLAPDLICYN 527

Query: 575 CLIDICRNRNLNERAHELLYLGTLYGLYPGL 605
             ID C      + A  LL      GL P +
Sbjct: 528 SAIDACSKGGRWKMAVALLGEMRAAGLTPNI 558



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 147/318 (46%), Gaps = 4/318 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           W+ + FF   + ++ + P +   Y   + +   G ++++   L  EM++ ++  + I Y+
Sbjct: 84  WKMAVFFLMEMPTKGIAP-DARSYGAAINACARGGRWKIALDLLREMLARDVTPNVIIYN 142

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           + I    +   ++ A+   + M   GL PD ++YS+ +    + G+ EE L L+E    S
Sbjct: 143 SAINSCAKAGQWEIAVSLVKEMATVGLAPDVISYSSAISACGRGGRWEEALELFEDMRTS 202

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G  PD I +          G +     +L+++ ++G+ PN++ Y++++ A  K G+  +A
Sbjct: 203 GVAPDVITYGSAIAACANGGRWKEAVSLLRKIPTVGLTPNVISYSSVITACAKEGQWKIA 262

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGK-ARWAKDALELWERMRENKWPMDFILYNTLLN 405
             L  EM    L P+  T  A I    K  RW K+A++L   M     P D + Y+++++
Sbjct: 263 LDLLREMKAMRLAPNIITYNAAIDACAKGGRW-KEAIDLLREMPTVGLPPDVVSYSSVID 321

Query: 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
            C+     +EA  +  +M       P+  SY + ++    GG    A  L  EM   GV 
Sbjct: 322 ACSKGDRWKEAIDILREMPTVGL-SPNAISYNSAIDACAKGGQWKEAKGLLREMPTAGVT 380

Query: 466 INVMGCTCLIQCLGKARR 483
             V+G    I    K  +
Sbjct: 381 QRVIGYNSAIAACAKGEQ 398



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 130/284 (45%), Gaps = 3/284 (1%)

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
           +D  +Y   IT   R   +++A+     M   G  PD   YSA++D  AK G+ +  +  
Sbjct: 31  IDQKSYCMAITACGRGGQWEQAVRLLREMPTEGAAPDLSAYSAVIDACAKGGQWKMAVFF 90

Query: 280 YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
                  G  PD  ++          G +     +L+EM +  V PN+++YN+ + +  K
Sbjct: 91  LMEMPTKGIAPDARSYGAAINACARGGRWKIALDLLREMLARDVTPNVIIYNSAINSCAK 150

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK-ARWAKDALELWERMRENKWPMDFI 398
           AG+  +A SL  EM   GL PD  + ++ I   G+  RW ++ALEL+E MR +    D I
Sbjct: 151 AGQWEIAVSLVKEMATVGLAPDVISYSSAISACGRGGRW-EEALELFEDMRTSGVAPDVI 209

Query: 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458
            Y + +  CA+ G  +EA  L   +       P+  SY++++      G    A++L  E
Sbjct: 210 TYGSAIAACANGGRWKEAVSLLRKIPTVGL-TPNVISYSSVITACAKEGQWKIALDLLRE 268

Query: 459 MSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           M  + +A N++     I    K  R  + + +       G+ PD
Sbjct: 269 MKAMRLAPNIITYNAAIDACAKGGRWKEAIDLLREMPTVGLPPD 312



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 141/303 (46%), Gaps = 2/303 (0%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           W+++      + ++   P +   Y+  + +   G Q+++      EM +  I  D  +Y 
Sbjct: 49  WEQAVRLLREMPTEGAAP-DLSAYSAVIDACAKGGQWKMAVFFLMEMPTKGIAPDARSYG 107

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
             I    R   +  A++    M    + P+ + Y++ ++  AK+G+ E  +SL +     
Sbjct: 108 AAINACARGGRWKIALDLLREMLARDVTPNVIIYNSAINSCAKAGQWEIAVSLVKEMATV 167

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G  PD I++S      G  G ++    + ++M++ GV P+++ Y + + A    G+   A
Sbjct: 168 GLAPDVISYSSAISACGRGGRWEEALELFEDMRTSGVAPDVITYGSAIAACANGGRWKEA 227

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            SL  ++   GLTP+  + +++I    K    K AL+L   M+  +   + I YN  ++ 
Sbjct: 228 VSLLRKIPTVGLTPNVISYSSVITACAKEGQWKIALDLLREMKAMRLAPNIITYNAAIDA 287

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
           CA  G  +EA  L  +M       PD  SY+++++    G     AI++  EM  +G++ 
Sbjct: 288 CAKGGRWKEAIDLLREMPTVGL-PPDVVSYSSVIDACSKGDRWKEAIDILREMPTVGLSP 346

Query: 467 NVM 469
           N +
Sbjct: 347 NAI 349



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 77/337 (22%), Positives = 157/337 (46%), Gaps = 3/337 (0%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           W+K+    + +K    + ++   Y + + +   G Q++   +L  EM +     D   YS
Sbjct: 13  WRKALRAVDGMKKLPGWLIDQKSYCMAITACGRGGQWEQAVRLLREMPTEGAAPDLSAYS 72

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
            +I    +   +  A+ +   M   G+ PD  +Y A ++  A+ G+ +  L L    +A 
Sbjct: 73  AVIDACAKGGQWKMAVFFLMEMPTKGIAPDARSYGAAINACARGGRWKIALDLLREMLAR 132

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
              P+ I ++       ++G ++    +++EM ++G+ P+++ Y++ + A G+ G+   A
Sbjct: 133 DVTPNVIIYNSAINSCAKAGQWEIAVSLVKEMATVGLAPDVISYSSAISACGRGGRWEEA 192

Query: 347 RSLFDEMVESGLTPDEKTL-TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405
             LF++M  SG+ PD  T  +A+       RW K+A+ L  ++       + I Y++++ 
Sbjct: 193 LELFEDMRTSGVAPDVITYGSAIAACANGGRW-KEAVSLLRKIPTVGLTPNVISYSSVIT 251

Query: 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
            CA  G  + A  L  +MK      P+  +Y A ++    GG    AI+L  EM  +G+ 
Sbjct: 252 ACAKEGQWKIALDLLREMKAMRL-APNIITYNAAIDACAKGGRWKEAIDLLREMPTVGLP 310

Query: 466 INVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            +V+  + +I    K  R  + + +       G+ P+
Sbjct: 311 PDVVSYSSVIDACSKGDRWKEAIDILREMPTVGLSPN 347



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 85/338 (25%), Positives = 151/338 (44%), Gaps = 37/338 (10%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           W+ +      +K+  L P   I YN  + +   G +++    L  EM +  +  D ++YS
Sbjct: 259 WKIALDLLREMKAMRLAP-NIITYNAAIDACAKGGRWKEAIDLLREMPTVGLPPDVVSYS 317

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL------- 279
           ++I    + + + EAI+    M   GL P+ ++Y++ +D  AK G+ +E   L       
Sbjct: 318 SVIDACSKGDRWKEAIDILREMPTVGLSPNAISYNSAIDACAKGGQWKEAKGLLREMPTA 377

Query: 280 --------YERGVASGWKPDPI--AFSVLGKM---------FGESGDYDGI--------- 311
                   Y   +A+  K +    A ++L +M         F  S   D           
Sbjct: 378 GVTQRVIGYNSAIAACAKGEQWKEALALLREMPTVGLHTTVFSYSSAIDACGKGNLWIKA 437

Query: 312 RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371
           + +L+EM ++G+ PN V YN+ ++A G+  +   A  L  EM   GL+PD  + ++ I  
Sbjct: 438 KELLREMATVGLAPNEVCYNSAIDACGRGDQWEEAVDLLREMPTVGLSPDVFSYSSAIAA 497

Query: 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
             K    K+AL + + M       D I YN+ ++ C+  G  + A  L  +M+ +    P
Sbjct: 498 CAKGDQWKEALAVLKEMSAAGLAPDLICYNSAIDACSKGGRWKMAVALLGEMRAAGL-TP 556

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVM 469
           +  SY++ ++    GG     I L EEM   GV  +V+
Sbjct: 557 NIISYSSAIDACVRGGQWKEGIALLEEMRGSGVVPDVI 594



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 106/222 (47%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
            I YN  + +   G Q++    L  EM +  +     +YS+ I    + NL+ +A E   
Sbjct: 383 VIGYNSAIAACAKGEQWKEALALLREMPTVGLHTTVFSYSSAIDACGKGNLWIKAKELLR 442

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
            M   GL P+EV Y++ +D   +  + EE + L       G  PD  ++S       +  
Sbjct: 443 EMATVGLAPNEVCYNSAIDACGRGDQWEEAVDLLREMPTVGLSPDVFSYSSAIAACAKGD 502

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
            +     VL+EM + G+ P+L+ YN+ ++A  K G+  +A +L  EM  +GLTP+  + +
Sbjct: 503 QWKEALAVLKEMSAAGLAPDLICYNSAIDACSKGGRWKMAVALLGEMRAAGLTPNIISYS 562

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCA 408
           + I    +    K+ + L E MR +    D I Y+ L+  CA
Sbjct: 563 SAIDACVRGGQWKEGIALLEEMRGSGVVPDVITYHALMVTCA 604



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 64/140 (45%), Gaps = 6/140 (4%)

Query: 135 DNTEEA--FLRAITEIPHQP---TRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIF 189
           D  EEA   LR +  +   P   +  +A+        W+++      + +  L P + I 
Sbjct: 467 DQWEEAVDLLREMPTVGLSPDVFSYSSAIAACAKGDQWKEALAVLKEMSAAGLAP-DLIC 525

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN  + +   G ++++   L  EM +  +  + I+YS+ I    R   + E I   E M 
Sbjct: 526 YNSAIDACSKGGRWKMAVALLGEMRAAGLTPNIISYSSAIDACVRGGQWKEGIALLEEMR 585

Query: 250 KTGLMPDEVTYSAILDVYAK 269
            +G++PD +TY A++   AK
Sbjct: 586 GSGVVPDVITYHALMVTCAK 605


>gi|255661136|gb|ACU25737.1| pentatricopeptide repeat-containing protein [Verbena macdougalii]
          Length = 426

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/283 (30%), Positives = 145/283 (51%), Gaps = 7/283 (2%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D  TYST+IT   +  LFD A+ W ++M +  +  D V YS ++++  K     + +S++
Sbjct: 8   DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
            R   SG+ PD +A++ +  +FG++  +   R ++ EM++ GV PN   Y+TLL    + 
Sbjct: 68  SRLKRSGFTPDIVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVEN 127

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
            K   A S+F EM E     D  T   +I +YG+   AK+A +L+  MR+     + + Y
Sbjct: 128 KKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSY 187

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           NTLL +  D  L  EA  LF  M+  +  + +  +Y +M+ IYG     + A  L +EM 
Sbjct: 188 NTLLRVYGDAELFGEAIHLFRLMQRKN-IEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 246

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVF------GVSIDR 497
             G+  N +  + +I    K  ++D    +F      GV ID+
Sbjct: 247 NRGIEPNSITYSTIISIWSKVGKLDRAAMLFQKLRSSGVDIDQ 289



 Score =  115 bits (288), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 79/345 (22%), Positives = 163/345 (47%), Gaps = 6/345 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K     P + + YN  +      + F+    L +EM +  +  +  +YS
Sbjct: 60  YSKAISIFSRLKRSGFTP-DIVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYS 118

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY + G  +E   L+      
Sbjct: 119 TLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 178

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   ++ N+V YN+++   GK  +   A
Sbjct: 179 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKA 238

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+ K      A  L++++R +   +D +LY T++  
Sbjct: 239 NNLIQEMQNRGIEPNSITYSTIISIWSKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVA 298

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K     +PDN      ++I    G ++ A  +F +  + G   
Sbjct: 299 YEKAGLVAHAKRLLHELK-----RPDNIPRDIAIHILVGAGRIEEATWVFRQAIDAGEVK 353

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
           ++     +I    K ++  ++V VF      G  PD  +   +L+
Sbjct: 354 DITVFERMIHLFSKYKKYGNVVEVFDKMCGLGYFPDSNVIALILN 398



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 137/271 (50%), Gaps = 1/271 (0%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
            +M  + +  D + YS +I  +++   + +AI  F R+ ++G  PD V Y+A+++V+ K+
Sbjct: 33  QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDIVAYNAMINVFGKA 92

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
               E  SL      +G  P+  ++S L  M+ E+  +     V  EM+ +    +L   
Sbjct: 93  KLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTC 152

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
           N +++  G+ G    A  LF  M + G+ P+  +   L+++YG A    +A+ L+  M+ 
Sbjct: 153 NIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR 212

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
                + + YN+++ +       E+A  L ++M+ +   +P++ +Y+ +++I+   G +D
Sbjct: 213 KNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ-NRGIEPNSITYSTIISIWSKVGKLD 271

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
            A  LF+++   GV I+ +    +I    KA
Sbjct: 272 RAAMLFQKLRSSGVDIDQVLYQTMIVAYEKA 302



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 126/263 (47%), Gaps = 1/263 (0%)

Query: 252 GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGI 311
            L PD  TYS ++  + K G  +  LS  ++        D + +S L ++  +  DY   
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 312 RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371
             +   +K  G  P++V YN ++   GKA     ARSL  EM  +G+TP+  + + L+ +
Sbjct: 64  ISIFSRLKRSGFTPDIVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTM 123

Query: 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
           Y + +   +AL ++  MRE K  +D    N ++++   +G+ +EA++LF  M+     +P
Sbjct: 124 YVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG-IEP 182

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           +  SY  +L +YG       AI LF  M    +  NV+    ++   GK    +    + 
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 242

Query: 492 GVSIDRGVKPDDRLCGCLLSVVS 514
               +RG++P+      ++S+ S
Sbjct: 243 QEMQNRGIEPNSITYSTIISIWS 265



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 53/242 (21%), Positives = 105/242 (43%), Gaps = 5/242 (2%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           P+  +    L +    + + ++   F  ++ +N+     + YN  M       + +    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNI-EQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  EM +  IE ++ITYSTII+   +    D A   F+++  +G+  D+V Y  ++  Y 
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISIWSKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYE 300

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           K+G V       +R +    +PD I   +   +   +G  +   +V ++    G   ++ 
Sbjct: 301 KAGLVAHA----KRLLHELKRPDNIPRDIAIHILVGAGRIEEATWVFRQAIDAGEVKDIT 356

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
           V+  ++    K  K G    +FD+M   G  PD   +  ++  YGK      A +++  M
Sbjct: 357 VFERMIHLFSKYKKYGNVVEVFDKMCGLGYFPDSNVIALILNAYGKLHEFDKANDVYMEM 416

Query: 389 RE 390
           +E
Sbjct: 417 QE 418



 Score = 62.8 bits (151), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 87/191 (45%), Gaps = 3/191 (1%)

Query: 355 ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
           E  L+PD  T + LI  +GK      AL   ++M +++ P D +LY+ L+ +   +    
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
           +A  +F  +K S +  PD  +Y AM+N++G       A  L  EM   GV  N    + L
Sbjct: 62  KAISIFSRLKRSGFT-PDIVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN- 533
           +    + ++  + + VF    +     D   C  ++ V      +++  K+   +++   
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180

Query: 534 -PKLVAFLNLI 543
            P +V++  L+
Sbjct: 181 EPNVVSYNTLL 191


>gi|224107129|ref|XP_002314384.1| predicted protein [Populus trichocarpa]
 gi|222863424|gb|EEF00555.1| predicted protein [Populus trichocarpa]
          Length = 764

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/311 (26%), Positives = 154/311 (49%), Gaps = 9/311 (2%)

Query: 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
            DEA   FE M      PD  T+ +++D   K G+V++   +YER + +   P+ + ++ 
Sbjct: 321 LDEACSIFEGMDYKVCSPDGATFCSLIDGLGKQGRVDDAYRIYERMLDADQIPNVVVYTS 380

Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
           L + F +    +    + +EM   G  P+L++ NT ++ + KAG+    R+LF+E+   G
Sbjct: 381 LIRNFFKCDRKEDGHKMYKEMMRSGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKARG 440

Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417
             PD ++ + LI    KA +A++  EL+  M++    +D   YNT+++     G V +A 
Sbjct: 441 FLPDTRSYSILIHSLVKAGFARETYELYYAMKDQGCVLDTRAYNTVIDGFCKSGKVNKAY 500

Query: 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
           +L E+MK   +  P   +Y ++++       +D A  LFEE    G+ +N +  + LI  
Sbjct: 501 QLLEEMKTMGH-HPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSNGIELNQVIYSSLIDG 559

Query: 478 LGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQ-----QA 532
            GK  R+D+   V    + +G+ P+     CLL  +     +E++ + + C Q     + 
Sbjct: 560 FGKVGRVDEAYLVMEEMMQKGLTPNVYTWNCLLDGLV---KAEEINEALVCFQSMKDLKC 616

Query: 533 NPKLVAFLNLI 543
            P  + +  LI
Sbjct: 617 TPNQITYCILI 627



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 158/324 (48%), Gaps = 2/324 (0%)

Query: 181 NLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDE 240
           N F  + + YNV +       +  +  +  +EM +N +  D++TY++++    + N  DE
Sbjct: 125 NTFDADIVLYNVCIDCFGKVGKVDMAWKFFHEMKANGLVPDDVTYTSMMGVLCKANRLDE 184

Query: 241 AIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGK 300
           A+E FE+M +   +P    Y+ ++  Y  +GK +E  SL ER  A G  P  +A++ +  
Sbjct: 185 AVEIFEQMEQNRQVPCAYAYNTMIMGYGSAGKFDEAYSLLERQRAKGCIPSVVAYNCILT 244

Query: 301 MFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTP 360
             G+ G  D    + +EMK     PNL  YN ++  + KAG    A  + D M E+GL P
Sbjct: 245 CLGKKGKTDKALRIFEEMKR-DAMPNLPTYNIIIGMLCKAGNVEAAFKVRDAMKEAGLFP 303

Query: 361 DEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLF 420
           + +T+  +I    KA+   +A  ++E M       D   + +L++     G V++A R++
Sbjct: 304 NVRTINIMIDRLCKAQKLDEACSIFEGMDYKVCSPDGATFCSLIDGLGKQGRVDDAYRIY 363

Query: 421 EDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK 480
           E M  +D   P+   YT+++  +      ++  ++++EM   G + ++M     + C+ K
Sbjct: 364 ERMLDADQI-PNVVVYTSLIRNFFKCDRKEDGHKMYKEMMRSGCSPDLMLLNTYMDCVFK 422

Query: 481 ARRIDDLVRVFGVSIDRGVKPDDR 504
           A   +    +F     RG  PD R
Sbjct: 423 AGETEKGRALFEEIKARGFLPDTR 446



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 93/329 (28%), Positives = 151/329 (45%), Gaps = 8/329 (2%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSL---RFGRQFQLIEQLANEMVSNEIELDNIT 224
           +K    F  IK++   P +T  Y++ + SL    F R+     +L   M      LD   
Sbjct: 427 EKGRALFEEIKARGFLP-DTRSYSILIHSLVKAGFARE---TYELYYAMKDQGCVLDTRA 482

Query: 225 YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
           Y+T+I    +    ++A +  E M   G  P  VTY +++D  AK  +++E   L+E   
Sbjct: 483 YNTVIDGFCKSGKVNKAYQLLEEMKTMGHHPTVVTYGSVVDGLAKIDRLDEAYMLFEEAK 542

Query: 285 ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344
           ++G + + + +S L   FG+ G  D    V++EM   G+ PN+  +N LL+ + KA +  
Sbjct: 543 SNGIELNQVIYSSLIDGFGKVGRVDEAYLVMEEMMQKGLTPNVYTWNCLLDGLVKAEEIN 602

Query: 345 LARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
            A   F  M +   TP++ T   LI    K R    A   W+ M++     + I Y  ++
Sbjct: 603 EALVCFQSMKDLKCTPNQITYCILINGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTAMI 662

Query: 405 NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
           +  A  G V +A  LFE  + S    PD+ SY AM+          +A +LFEE    G 
Sbjct: 663 SGLAKSGNVAQASSLFERFRASGGI-PDSASYNAMIEGLSIANRALDAYQLFEETRLKGC 721

Query: 465 AINVMGCTCLIQCLGKARRIDDLVRVFGV 493
           +I+   C  L+  L KA  ++    V  V
Sbjct: 722 SIHTKTCVALLDALHKAECLEQAAIVGAV 750



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 82/314 (26%), Positives = 144/314 (45%), Gaps = 10/314 (3%)

Query: 201 RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTY 260
           R F  +EQ+  EM        N T   ++    +     EA +  + M      P    Y
Sbjct: 5   RNFDYLEQILGEMSIAGFGPTNYTCVELVASCVKSRKLIEAFDLLQMMRHFKFRPAFSAY 64

Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
           + ++   ++ G+ + +L+L+ +    G++ +    + L ++F   G  D    +L EMKS
Sbjct: 65  TTLIGALSEVGESDRMLALFNQMQELGYEVNVHLLTTLIRVFSREGRVDAALSLLDEMKS 124

Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380
                ++V+YN  ++  GK GK  +A   F EM  +GL PD+ T T+++ +  KA    +
Sbjct: 125 NTFDADIVLYNVCIDCFGKVGKVDMAWKFFHEMKANGLVPDDVTYTSMMGVLCKANRLDE 184

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
           A+E++E+M +N+       YNT++      G  +EA  L E  + +  C P   +Y  +L
Sbjct: 185 AVEIFEQMEQNRQVPCAYAYNTMIMGYGSAGKFDEAYSLLERQR-AKGCIPSVVAYNCIL 243

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
              G  G  D A+ +FEEM    +  N+     +I  L KA  ++   +V     + G+ 
Sbjct: 244 TCLGKKGKTDKALRIFEEMKRDAMP-NLPTYNIIIGMLCKAGNVEAAFKVRDAMKEAGLF 302

Query: 501 PD--------DRLC 506
           P+        DRLC
Sbjct: 303 PNVRTINIMIDRLC 316



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 139/311 (44%), Gaps = 1/311 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D  +YS +I    +     E  E +  M   G + D   Y+ ++D + KSGKV +   L 
Sbjct: 444 DTRSYSILIHSLVKAGFARETYELYYAMKDQGCVLDTRAYNTVIDGFCKSGKVNKAYQLL 503

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
           E     G  P  + +  +     +    D    + +E KS G++ N V+Y++L++  GK 
Sbjct: 504 EEMKTMGHHPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSNGIELNQVIYSSLIDGFGKV 563

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G+   A  + +EM++ GLTP+  T   L+    KA    +AL  ++ M++ K   + I Y
Sbjct: 564 GRVDEAYLVMEEMMQKGLTPNVYTWNCLLDGLVKAEEINEALVCFQSMKDLKCTPNQITY 623

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
             L+N    +    +A   +++M+     KP+  +YTAM++     GNV  A  LFE   
Sbjct: 624 CILINGLCKVRKFNKAFVFWQEMQKQGL-KPNTITYTAMISGLAKSGNVAQASSLFERFR 682

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSE 520
             G   +      +I+ L  A R  D  ++F  +  +G     + C  LL  +   E  E
Sbjct: 683 ASGGIPDSASYNAMIEGLSIANRALDAYQLFEETRLKGCSIHTKTCVALLDALHKAECLE 742

Query: 521 DVGKVITCLQQ 531
               V   L++
Sbjct: 743 QAAIVGAVLRE 753



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 53/260 (20%), Positives = 109/260 (41%), Gaps = 8/260 (3%)

Query: 136 NTEEAFLRAITEIPHQPTRENALLILNSLKFWQK---SYFFFNWIKSQNLFPMETIFYNV 192
           N     L  +  + H PT      +++ L    +   +Y  F   KS N   +  + Y+ 
Sbjct: 497 NKAYQLLEEMKTMGHHPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKS-NGIELNQVIYSS 555

Query: 193 TMKSLRFGRQFQLIEQ--LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYK 250
            +    FG+  ++ E   +  EM+   +  +  T++ ++    +    +EA+  F+ M  
Sbjct: 556 LIDG--FGKVGRVDEAYLVMEEMMQKGLTPNVYTWNCLLDGLVKAEEINEALVCFQSMKD 613

Query: 251 TGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDG 310
               P+++TY  +++   K  K  +    ++     G KP+ I ++ +     +SG+   
Sbjct: 614 LKCTPNQITYCILINGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTAMISGLAKSGNVAQ 673

Query: 311 IRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK 370
              + +  ++ G  P+   YN ++E +  A +   A  LF+E    G +   KT  AL+ 
Sbjct: 674 ASSLFERFRASGGIPDSASYNAMIEGLSIANRALDAYQLFEETRLKGCSIHTKTCVALLD 733

Query: 371 IYGKARWAKDALELWERMRE 390
              KA   + A  +   +RE
Sbjct: 734 ALHKAECLEQAAIVGAVLRE 753


>gi|413948659|gb|AFW81308.1| hypothetical protein ZEAMMB73_549819 [Zea mays]
          Length = 795

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 142/294 (48%), Gaps = 1/294 (0%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L +EM+   +  D +TY+++I    +    D+A+   + M+  G+MPD  TY+ ++  Y 
Sbjct: 222 LFHEMMGQGLPPDVVTYNSLIDGLCKAQAMDKAVAILQHMFDKGVMPDTRTYNIMIRGYC 281

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
             G++EE + L ++   SG +PD + +S+L + + + G     R V   M   G +PN  
Sbjct: 282 SLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYCKIGRCAEARSVFDSMVRKGQKPNST 341

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
           +Y+ LL      G     R L D M+  G+  + +    LI  Y K      A+  +  M
Sbjct: 342 IYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEM 401

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
           R+N    D + Y+T++++    G VE+A   F  M +S+   P+  S+T++++   S G 
Sbjct: 402 RQNGLRPDVVSYSTVIHILCKTGRVEDAVYHFNQM-VSEGLSPNIISFTSLIHGLCSIGE 460

Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
                EL  EM   G+  + +    ++  L K  R+ +    F + I  GVKPD
Sbjct: 461 WKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPD 514



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/319 (26%), Positives = 160/319 (50%), Gaps = 10/319 (3%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSN---EIELDNITYSTIITCAKRCNLFDEAIEWFE 246
           YN  +K L   ++ Q   +L   M ++       + ++Y+T+I    +    D+A   F 
Sbjct: 165 YNALIKGLCVEKKSQEALELLIHMTADGGYNCSPNVVSYNTVIDGFFKEGEVDKAYFLFH 224

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
            M   GL PD VTY++++D   K+  +++ +++ +     G  PD   ++++ + +   G
Sbjct: 225 EMMGQGLPPDVVTYNSLIDGLCKAQAMDKAVAILQHMFDKGVMPDTRTYNIMIRGYCSLG 284

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
             +    +L++M   G+QP++V Y+ L++   K G+   ARS+FD MV  G  P+     
Sbjct: 285 QLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYH 344

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
            L+  Y       D  +L + M  +  P +   +N L+   A  G V++A   F +M+  
Sbjct: 345 ILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMR-Q 403

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL---GKARR 483
           +  +PD  SY+ +++I    G V++A+  F +M   G++ N++  T LI  L   G+ ++
Sbjct: 404 NGLRPDVVSYSTVIHILCKTGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKK 463

Query: 484 IDDLVRVFGVSIDRGVKPD 502
           +++L       I+RG+ PD
Sbjct: 464 VEELAFEM---INRGIHPD 479



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 91/360 (25%), Positives = 159/360 (44%), Gaps = 41/360 (11%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           K+YF F+ +  Q L P + + YN  +  L   +       +   M    +  D  TY+ +
Sbjct: 218 KAYFLFHEMMGQGL-PPDVVTYNSLIDGLCKAQAMDKAVAILQHMFDKGVMPDTRTYNIM 276

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
           I         +EA+   ++M  +GL PD VTYS ++  Y K G+  E  S+++  V  G 
Sbjct: 277 IRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYCKIGRCAEARSVFDSMVRKGQ 336

Query: 289 KPDPI-----------------------------------AFSVLGKMFGESGDYDGIRY 313
           KP+                                     AF++L   + + G  D    
Sbjct: 337 KPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMT 396

Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK-IY 372
              EM+  G++P++V Y+T++  + K G+   A   F++MV  GL+P+  + T+LI  + 
Sbjct: 397 AFTEMRQNGLRPDVVSYSTVIHILCKTGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLC 456

Query: 373 GKARWAKDALELWERMRENKWPMDFILYNTLL-NMCADIGLVEEAERLFEDMKLSDYCKP 431
               W K     +E +     P D I  NT++ N+C + G V EA+  F DM +    KP
Sbjct: 457 SIGEWKKVEELAFEMINRGIHP-DAIFMNTIMDNLCKE-GRVVEAQDFF-DMVIHIGVKP 513

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           D  SY  +++ Y   G +D +I+  + M  +G+  +      L+    K  R++D + ++
Sbjct: 514 DVVSYNTLIDGYCFVGKMDESIKQLDRMVSIGLRPDSWTYNSLLNGYFKNGRVEDALALY 573



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 148/308 (48%), Gaps = 20/308 (6%)

Query: 206 IEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
           +  L + M+ + I  ++  ++ +I    +    D+A+  F  M + GL PD V+YS ++ 
Sbjct: 359 VRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIH 418

Query: 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325
           +  K+G+VE+ +  + + V+ G  P+ I+F+ L       G++  +  +  EM + G+ P
Sbjct: 419 ILCKTGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHP 478

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
           + +  NT+++ + K G+   A+  FD ++  G+ PD  +   LI  Y       ++++  
Sbjct: 479 DAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPDVVSYNTLIDGYCFVGKMDESIKQL 538

Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD--YCKPDNYSYTAMLNIY 443
           +RM       D   YN+LLN     G VE+A  L+ +M   D  +C     +   ML+  
Sbjct: 539 DRMVSIGLRPDSWTYNSLLNGYFKNGRVEDALALYREMFRKDVKFCA---ITSNIMLHGL 595

Query: 444 GSGGNVDNAIELFEEMSELGVAI------NVMGCTCLIQCLGKARRI-DDL--------V 488
              G +  A EL+ +M + G  +       V+G  C   C+ +A R+ +DL        V
Sbjct: 596 FQAGRIVAARELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDV 655

Query: 489 RVFGVSID 496
           R F + I+
Sbjct: 656 RTFSIVIN 663



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/321 (23%), Positives = 142/321 (44%), Gaps = 38/321 (11%)

Query: 220 LDNITYSTIITCAKRCNLFDEAIEW-FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS 278
           + N+T + +I      N  D+A++  F RM + G  PD  +Y+A++       K +E L 
Sbjct: 124 VQNVTLNQLIKGLCDGNRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALE 183

Query: 279 LYERGVASGW---KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLE 335
           L     A G     P+ ++++ +   F + G+ D   ++  EM   G+ P++V YN+L++
Sbjct: 184 LLIHMTADGGYNCSPNVVSYNTVIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLID 243

Query: 336 AMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPM 395
            + KA     A ++   M + G+ PD +T   +I+ Y      ++A+ L ++M  +    
Sbjct: 244 GLCKAQAMDKAVAILQHMFDKGVMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQP 303

Query: 396 DFILYNTLLNMCADIGLVEEAERLFE---------------------------------- 421
           D + Y+ L+     IG   EA  +F+                                  
Sbjct: 304 DVVTYSLLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLL 363

Query: 422 DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
           D+ + D    ++ ++  ++  Y   G VD A+  F EM + G+  +V+  + +I  L K 
Sbjct: 364 DLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKT 423

Query: 482 RRIDDLVRVFGVSIDRGVKPD 502
            R++D V  F   +  G+ P+
Sbjct: 424 GRVEDAVYHFNQMVSEGLSPN 444



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/306 (23%), Positives = 141/306 (46%), Gaps = 39/306 (12%)

Query: 161 LNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIE 219
           L S+  W+K       + ++ + P + IF N  M +L + GR  +  +   + ++   ++
Sbjct: 455 LCSIGEWKKVEELAFEMINRGIHP-DAIFMNTIMDNLCKEGRVVE-AQDFFDMVIHIGVK 512

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
            D ++Y+T+I         DE+I+  +RM   GL PD  TY+++L+ Y K+G+VE+ L+L
Sbjct: 513 PDVVSYNTLIDGYCFVGKMDESIKQLDRMVSIGLRPDSWTYNSLLNGYFKNGRVEDALAL 572

Query: 280 YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
           Y                                   +EM    V+   +  N +L  + +
Sbjct: 573 Y-----------------------------------REMFRKDVKFCAITSNIMLHGLFQ 597

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
           AG+   AR L+ +MV+ G     +T   ++    +     +AL ++E +R  ++ +D   
Sbjct: 598 AGRIVAARELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVRT 657

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           ++ ++N    +G ++EA+ LF  M L     PD  +Y+ M+  +   G ++ +  LF  M
Sbjct: 658 FSIVINALLKVGRIDEAKSLFSAMVLRGPV-PDVITYSLMIKSHIEEGLLEESDNLFLSM 716

Query: 460 SELGVA 465
            + G A
Sbjct: 717 EKNGCA 722



 Score = 60.1 bits (144), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 90/229 (39%), Gaps = 34/229 (14%)

Query: 277 LSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA 336
           +SL+   V SG         +L + F   G  D            G +   V  N L++ 
Sbjct: 76  VSLFNTMVRSGVNMMAAIIGILIRCFCTVGRLDLAFAAFALFLKTGWRVQNVTLNQLIKG 135

Query: 337 MGKAGKPGLARSL-FDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPM 395
           +    +   A  + F  M E G TPD  +  ALIK     + +++ALEL           
Sbjct: 136 LCDGNRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALEL----------- 184

Query: 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIEL 455
                  L++M AD G                 C P+  SY  +++ +   G VD A  L
Sbjct: 185 -------LIHMTADGGY---------------NCSPNVVSYNTVIDGFFKEGEVDKAYFL 222

Query: 456 FEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR 504
           F EM   G+  +V+    LI  L KA+ +D  V +     D+GV PD R
Sbjct: 223 FHEMMGQGLPPDVVTYNSLIDGLCKAQAMDKAVAILQHMFDKGVMPDTR 271



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 89/208 (42%), Gaps = 4/208 (1%)

Query: 191 NVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIIT--CAKRCNLFDEAIEWFERM 248
           N+ +  L    +     +L  +MV    +L   TY+T++   C   C   DEA+  FE +
Sbjct: 589 NIMLHGLFQAGRIVAARELYMKMVDRGTQLRIETYNTVLGGLCENSC--VDEALRMFEDL 646

Query: 249 YKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY 308
                  D  T+S +++   K G+++E  SL+   V  G  PD I +S++ K   E G  
Sbjct: 647 RSKEFELDVRTFSIVINALLKVGRIDEAKSLFSAMVLRGPVPDVITYSLMIKSHIEEGLL 706

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
           +    +   M+  G   +  + N ++  + + G    A +   ++ E   + +  T   L
Sbjct: 707 EESDNLFLSMEKNGCAADSHMLNIIVRRLLEKGDVRRAGTYLTKIDEKNFSLEASTAALL 766

Query: 369 IKIYGKARWAKDALELWERMRENKWPMD 396
           I I  + ++ K+   L E+      P D
Sbjct: 767 IPIVSEKKYQKEVKFLPEKYHSFMQPRD 794


>gi|359473390|ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
          Length = 748

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/279 (29%), Positives = 138/279 (49%), Gaps = 1/279 (0%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           +L +EM   +I  D ITY+ +I    +     EA + F  M    L PDEVTY+A++D Y
Sbjct: 379 RLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGY 438

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            K GK++E  SL+ + +  G  P+ + ++ L     + G+ D    +L EM   G++ N+
Sbjct: 439 CKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNI 498

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
             YN+L+  + KAG    A  L  +M  +G  PD  T T L+  Y K+R    A EL  +
Sbjct: 499 YTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQ 558

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           M + +     + +N L+N     G++E+ E+L + M L     P+  +Y +++  Y    
Sbjct: 559 MLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWM-LEKGIMPNATTYNSLIKQYCIRN 617

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
           N+    E++  M   GV  +      LI+   KAR + +
Sbjct: 618 NMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKE 656



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 146/320 (45%), Gaps = 11/320 (3%)

Query: 187 TIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           T  YN+   SL + GR  +   QL  +M       D I+YST+I    +       ++  
Sbjct: 253 TASYNIITHSLCQLGRVVE-AHQLLLQMELRGCIPDVISYSTVINGYCQVGELQRVLKLI 311

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           E M   GL P+  TY+ ++ +  K+GKV E   +    ++ G  PD + ++ L   F + 
Sbjct: 312 EEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKL 371

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G+      +  EM+   + P+ + Y  ++  + + G+   A  LF EMV   L PDE T 
Sbjct: 372 GNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTY 431

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
           TALI  Y K    K+A  L  +M +     + + Y  L +     G V+ A  L  +M  
Sbjct: 432 TALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEM-- 489

Query: 426 SDYCKP----DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
              C+     + Y+Y +++N     GN+D A++L ++M   G   + +  T L+    K+
Sbjct: 490 ---CRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKS 546

Query: 482 RRIDDLVRVFGVSIDRGVKP 501
           R +     +    +DR ++P
Sbjct: 547 REMVRAHELLRQMLDRELQP 566



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 82/329 (24%), Positives = 148/329 (44%), Gaps = 29/329 (8%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           Q  Y + +W     +F    IF+ V +++       +L +++ N             Y  
Sbjct: 170 QLIYTYKDWGSDPRVFD---IFFQVLVEAGMLDEARKLFDKMLN-------------YGL 213

Query: 228 IITCAKRCNLFDE-----------AIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV 276
           +I+    CNLF             A++ F    + G+  +  +Y+ I     + G+V E 
Sbjct: 214 LIS-VDSCNLFISHLSEDLDGIKIALKVFVEFPEVGVCWNTASYNIITHSLCQLGRVVEA 272

Query: 277 LSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA 336
             L  +    G  PD I++S +   + + G+   +  +++EM+  G++PN   YN ++  
Sbjct: 273 HQLLLQMELRGCIPDVISYSTVINGYCQVGELQRVLKLIEEMQIKGLKPNPYTYNGVILL 332

Query: 337 MGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMD 396
           + K GK   A  +  EM+  G+ PD    T LI  + K      A  L++ M++ K   D
Sbjct: 333 LCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPD 392

Query: 397 FILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELF 456
           FI Y  ++      G V EA++LF +M +    +PD  +YTA+++ Y   G +  A  L 
Sbjct: 393 FITYTAVICGLCQTGRVMEADKLFHEM-VCKRLEPDEVTYTALIDGYCKEGKMKEAFSLH 451

Query: 457 EEMSELGVAINVMGCTCLIQCLGKARRID 485
            +M ++G+  N++  T L   L K   +D
Sbjct: 452 NQMLQMGLTPNIVTYTALADGLCKCGEVD 480



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 112/254 (44%), Gaps = 1/254 (0%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           +L +EM    +EL+  TY++++    +    D+A++  + M   G  PD VTY+ ++D Y
Sbjct: 484 ELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAY 543

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            KS ++     L  + +    +P  + F+VL   F  SG  +    +L+ M   G+ PN 
Sbjct: 544 CKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNA 603

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
             YN+L++             ++  M   G+ PD  T   LIK + KAR  K+A  L   
Sbjct: 604 TTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRD 663

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           M    + +    YN L+          EA  LFE M+       D   Y    +I    G
Sbjct: 664 MVGKGFNLTVSSYNALIKGFYKRKKFLEARELFEQMRREGLV-ADREIYNIFADINYDEG 722

Query: 448 NVDNAIELFEEMSE 461
            ++  +EL +E  E
Sbjct: 723 KMELTLELCDEAIE 736



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 114/257 (44%), Gaps = 1/257 (0%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L N+M+   +  + +TY+ +     +C   D A E    M + GL  +  TY+++++   
Sbjct: 450 LHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLC 509

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           K+G +++ + L +    +G+ PD + ++ L   + +S +      +L++M    +QP +V
Sbjct: 510 KAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVV 569

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            +N L+     +G       L   M+E G+ P+  T  +LIK Y      +   E++  M
Sbjct: 570 TFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGM 629

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
                  D   YN L+        ++EA  L  DM    +      SY A++  +     
Sbjct: 630 CAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGF-NLTVSSYNALIKGFYKRKK 688

Query: 449 VDNAIELFEEMSELGVA 465
              A ELFE+M   G+ 
Sbjct: 689 FLEARELFEQMRREGLV 705



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/202 (19%), Positives = 89/202 (44%), Gaps = 4/202 (1%)

Query: 183 FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
           F  + + Y   M +    R+     +L  +M+  E++   +T++ ++       + ++  
Sbjct: 529 FHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGE 588

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
           +  + M + G+MP+  TY++++  Y     +     +Y    A G  PD   +++L K  
Sbjct: 589 KLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGH 648

Query: 303 GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
            ++ +     ++ ++M   G    +  YN L++   K  K   AR LF++M   GL  D 
Sbjct: 649 CKARNMKEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADR 708

Query: 363 KTLTALIKIYGKARWAKDALEL 384
           +    +  I+    + +  +EL
Sbjct: 709 E----IYNIFADINYDEGKMEL 726



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 77/178 (43%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
            + +NV M         +  E+L   M+   I  +  TY+++I      N      E + 
Sbjct: 568 VVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYR 627

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
            M   G++PD  TY+ ++  + K+  ++E   L+   V  G+     +++ L K F +  
Sbjct: 628 GMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRK 687

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
            +   R + ++M+  G+  +  +YN   +     GK  L   L DE +E  L  D +T
Sbjct: 688 KFLEARELFEQMRREGLVADREIYNIFADINYDEGKMELTLELCDEAIEKCLVGDIQT 745


>gi|222637660|gb|EEE67792.1| hypothetical protein OsJ_25528 [Oryza sativa Japonica Group]
          Length = 475

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/322 (27%), Positives = 149/322 (46%), Gaps = 1/322 (0%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           Y + +  L   R    +E +  EM S  +  D   YS++I    R      A E F+   
Sbjct: 140 YTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNVRRASEVFDECV 199

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
             G+ P+E TY A+++ + K G++E    L       G   + I F+ +   +      D
Sbjct: 200 GNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMIDGYCRKNMVD 259

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               +   M+ +G++ ++  YNTL   + +A +   A++L   M+E G+ P+  + T LI
Sbjct: 260 KALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMIEKGVRPNHVSYTTLI 319

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
            I+       +A  L+  M  N      + YN +++     G + EAER   +M+     
Sbjct: 320 SIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERFKNEMEKKGLV 379

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
            PD YSY A+++ +   G VD A+ LFEEM + G   N++  T LI  L K  R ++  +
Sbjct: 380 -PDIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLVAYTALISGLAKEGRSEEAFQ 438

Query: 490 VFGVSIDRGVKPDDRLCGCLLS 511
           ++   +  G+ PDD L   L+ 
Sbjct: 439 LYDNMLGDGLTPDDALYSALVG 460



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 125/261 (47%), Gaps = 4/261 (1%)

Query: 255 PDEVT---YSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGI 311
           PD VT    S ++D Y KSG+V     L +     G K + + ++ L   +    D D +
Sbjct: 62  PDSVTPLSASVVVDGYCKSGRVAHARQLLDEMPRHGVKVNALCYNSLLDAYTREKDDDRV 121

Query: 312 RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371
             +L+ M++ G++P +  Y  L++ +  A       ++F+EM    L+ D    +++I  
Sbjct: 122 AEMLKVMENEGIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINA 181

Query: 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
           Y +A   + A E+++    N    +   Y  L+N    IG +E AE L  DM++      
Sbjct: 182 YCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRG-VGI 240

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           +   +  M++ Y     VD A+E+   M ++G+ ++V     L   L +A R+D+   + 
Sbjct: 241 NQIVFNTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLL 300

Query: 492 GVSIDRGVKPDDRLCGCLLSV 512
            + I++GV+P+      L+S+
Sbjct: 301 RIMIEKGVRPNHVSYTTLISI 321


>gi|222629097|gb|EEE61229.1| hypothetical protein OsJ_15269 [Oryza sativa Japonica Group]
          Length = 855

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/387 (23%), Positives = 180/387 (46%), Gaps = 29/387 (7%)

Query: 184 PMETIFYNVTMKSLRFGRQ-------FQLIEQLANEMVSNEIELDNITYSTIITCAKRCN 236
           P   + YN+ + S+  G++         L E++  EM++    L+ +  +    C     
Sbjct: 209 PPGYVVYNIFIGSI-CGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVG 267

Query: 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS 296
            FD+A +  + M + G +PD  TYS ++     + KVE+   L++     G  PD   ++
Sbjct: 268 KFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYT 327

Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356
           +L   F ++G  +  +++ +EM+S+G  P +V Y  L+ A  KA +   A  +F  MV++
Sbjct: 328 ILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDA 387

Query: 357 GLTPDEKTLTALIKIYGKARWAKDALELWERM-----------------RENKWPMDFIL 399
           G  P++ T  AL+    KA     A E++ ++                 R    P + + 
Sbjct: 388 GCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAP-NVVT 446

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           Y  L++       V+ A  L + M LS  C+P++  Y A+++ +   G +D+A E+F +M
Sbjct: 447 YGALVDGLCKAHKVDHAHELLDAM-LSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQM 505

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETS 519
           ++ G   +V   T LI  + K  R+D  ++V    +     P+      ++  +     S
Sbjct: 506 TKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGES 565

Query: 520 EDVGKVITCLQQ--ANPKLVAFLNLIE 544
           E   K+++ +++   +P +V +  LI+
Sbjct: 566 EKALKLLSLMEEKGCSPNVVTYTALID 592



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 90/311 (28%), Positives = 144/311 (46%), Gaps = 19/311 (6%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  EM    +  D  TY+ +I    +  L ++A   FE M   G  P  VTY+A++  Y 
Sbjct: 310 LFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYL 369

Query: 269 KSGKVEEVLSLYERGVASGWKPDPI-----------------AFSVLGKMFGESGDYDGI 311
           K+ +V +   ++ R V +G +P+ +                 AF V  K+ G S   D  
Sbjct: 370 KAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSD 429

Query: 312 RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371
            Y   E +   + PN+V Y  L++ + KA K   A  L D M+ SG  P+     ALI  
Sbjct: 430 FYFPCEDRHT-LAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDG 488

Query: 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
           + KA     A E++ +M +  +      Y +L++     G ++ A ++   M L D C P
Sbjct: 489 FCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQM-LKDSCTP 547

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           +  +YTAM++     G  + A++L   M E G + NV+  T LI  LGKA +ID  + +F
Sbjct: 548 NVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLF 607

Query: 492 GVSIDRGVKPD 502
                +G  P+
Sbjct: 608 TQMSRKGCSPN 618



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/349 (24%), Positives = 156/349 (44%), Gaps = 18/349 (5%)

Query: 170 SYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTII 229
           S F+F       L P   + Y   +  L    +     +L + M+S+  E ++I Y  +I
Sbjct: 428 SDFYFPCEDRHTLAP-NVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALI 486

Query: 230 TCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWK 289
               +    D A E F +M K G +P   TY++++D   K G+++  + +  + +     
Sbjct: 487 DGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCT 546

Query: 290 PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSL 349
           P+ + ++ +       G+ +    +L  M+  G  PN+V Y  L++ +GKAGK  L+  L
Sbjct: 547 PNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDL 606

Query: 350 FDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL----- 404
           F +M   G +P+  T   LI     A     A  L   M++  WP     Y   +     
Sbjct: 607 FTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSK 666

Query: 405 NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
           +  A +G++EE E        S    P    Y  +++ +   G ++ A+EL +EM E+  
Sbjct: 667 SFIASLGILEEME--------SYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPS 718

Query: 465 AI---NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
           ++   N M  + LIQ L  A ++++  R++     RG  P+  +  CL+
Sbjct: 719 SVKTDNDMYAS-LIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLI 766



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 84/338 (24%), Positives = 153/338 (45%), Gaps = 18/338 (5%)

Query: 189 FYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERM 248
           F +   K  R+     +IE+        + +LD +  + +I+     + FDEA+ +  RM
Sbjct: 81  FAHALCKEGRWADALDMIER-------EDFKLDTVLCTHMISGLMEASYFDEAMSFLHRM 133

Query: 249 YKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY 308
                +P+ VTY  +L  + K  ++     +    +  G  P+P  F+ L   +    DY
Sbjct: 134 RCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDY 193

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAM-GKAGKPG-----LARSLFDEMVESGLTPDE 362
                +L  M + G  P  VVYN  + ++ G+   P      LA  ++ EM+ +    ++
Sbjct: 194 AYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNK 253

Query: 363 KTLTALIK-IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFE 421
             +    + + G  ++ K A +L + M    +  D   Y+ ++        VE+A  LF+
Sbjct: 254 VNVANFARCLCGVGKFDK-AFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQ 312

Query: 422 DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
           +MK+     PD Y+YT +++ +   G ++ A  LFEEM  +G +  V+  T LI    KA
Sbjct: 313 EMKMVGV-TPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKA 371

Query: 482 RRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETS 519
           +++     +F   +D G +P+D   G L  V  LC+  
Sbjct: 372 KQVPQANDIFHRMVDAGCRPNDVTYGAL--VDGLCKAG 407



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 6/125 (4%)

Query: 318 MKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK-AR 376
           +K  G +P+ V YN L++ +  AG+  L   +  EM ESG   D  T+        K  R
Sbjct: 31  LKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGR 90

Query: 377 WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY 436
           WA DAL++ ER     + +D +L   +++   +    +EA      M+ +  C P+  +Y
Sbjct: 91  WA-DALDMIER---EDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNS-CIPNVVTY 145

Query: 437 TAMLN 441
             +L+
Sbjct: 146 RTLLS 150



 Score = 41.2 bits (95), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 38/182 (20%), Positives = 78/182 (42%), Gaps = 14/182 (7%)

Query: 287 GWKPDPIAFSVLGKMFGESGDYD-GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGL 345
           G++P  + ++ L ++   +G  D G R V +EM   G   +         A+ K G+   
Sbjct: 35  GYRPSKVTYNALVQVLSSAGQVDLGFR-VQKEMSESGFCMDRFTVGCFAHALCKEGRWAD 93

Query: 346 ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405
           A    D +       D    T +I    +A +  +A+    RMR N    + + Y TLL+
Sbjct: 94  A---LDMIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLS 150

Query: 406 MCADIGLVEEAE----RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461
                G +++ +    +   +M +++ C P+   + ++++ Y +  +   A +L   M+ 
Sbjct: 151 -----GFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTT 205

Query: 462 LG 463
            G
Sbjct: 206 CG 207


>gi|356540375|ref|XP_003538665.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
           chloroplastic-like [Glycine max]
          Length = 1476

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 164/335 (48%), Gaps = 10/335 (2%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLA--NEMVSNEIELDNITYSTIIT 230
             N ++   + P + I YN  + +    R+  L E +A  ++M S+  + D  TY+ +I+
Sbjct: 308 LLNEVRRSGIRP-DIITYNTLISAC--SRESNLEEAVAVFSDMESHRCQPDLWTYNAMIS 364

Query: 231 CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
              RC    +A E F+ +   G  PD VTY+++L  +++ G  E+V  + E  V  G+  
Sbjct: 365 VYGRCARARKAEELFKELESKGFFPDAVTYNSLLYAFSREGNTEKVRDICEEMVKRGFGQ 424

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
           D + ++ +  M+G+ G +D    + ++MKS G  P+ V Y  L++++GKA K   A ++ 
Sbjct: 425 DEMTYNTIIHMYGKQGRHDQAMQIYRDMKSSGRNPDAVTYTVLIDSLGKASKVEEAANVM 484

Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
            EM+++G+ P   T +ALI  Y KA   ++A E +  MR +    D + Y+ +L+     
Sbjct: 485 SEMLDAGVKPTLHTYSALICAYAKAGKREEAEETFNCMRRSGIKPDRLAYSVMLDFFLRF 544

Query: 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG 470
             +++A  L+ +M + +   PDN  Y  M++        D    +  +M EL    + M 
Sbjct: 545 NEMKKAMGLYHEM-IREGFTPDNGLYEVMMHALVRENMWDVVDRIIRDMEEL----SGMN 599

Query: 471 CTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRL 505
              +   L K    D   ++  V+I  G + D  +
Sbjct: 600 PQVISSVLVKGGCYDHAAKMLKVAISNGYELDHEI 634



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 77/256 (30%), Positives = 125/256 (48%), Gaps = 1/256 (0%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           QL NE+  + I  D ITY+T+I+   R +  +EA+  F  M      PD  TY+A++ VY
Sbjct: 307 QLLNEVRRSGIRPDIITYNTLISACSRESNLEEAVAVFSDMESHRCQPDLWTYNAMISVY 366

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            +  +  +   L++   + G+ PD + ++ L   F   G+ + +R + +EM   G   + 
Sbjct: 367 GRCARARKAEELFKELESKGFFPDAVTYNSLLYAFSREGNTEKVRDICEEMVKRGFGQDE 426

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
           + YNT++   GK G+   A  ++ +M  SG  PD  T T LI   GKA   ++A  +   
Sbjct: 427 MTYNTIIHMYGKQGRHDQAMQIYRDMKSSGRNPDAVTYTVLIDSLGKASKVEEAANVMSE 486

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           M +         Y+ L+   A  G  EEAE  F  M+ S   KPD  +Y+ ML+ +    
Sbjct: 487 MLDAGVKPTLHTYSALICAYAKAGKREEAEETFNCMRRSG-IKPDRLAYSVMLDFFLRFN 545

Query: 448 NVDNAIELFEEMSELG 463
            +  A+ L+ EM   G
Sbjct: 546 EMKKAMGLYHEMIREG 561



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/354 (20%), Positives = 164/354 (46%), Gaps = 6/354 (1%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDE--AIEWFER 247
           YN  M       +F  +++L + M       D ++++T+I    +    +   A++    
Sbjct: 252 YNAMMGVYARNGRFSKVKELLDLMRERGCVPDLVSFNTLINARMKSGAMEPNLALQLLNE 311

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           + ++G+ PD +TY+ ++   ++   +EE ++++    +   +PD   ++ +  ++G    
Sbjct: 312 VRRSGIRPDIITYNTLISACSRESNLEEAVAVFSDMESHRCQPDLWTYNAMISVYGRCAR 371

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
                 + +E++S G  P+ V YN+LL A  + G     R + +EMV+ G   DE T   
Sbjct: 372 ARKAEELFKELESKGFFPDAVTYNSLLYAFSREGNTEKVRDICEEMVKRGFGQDEMTYNT 431

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           +I +YGK      A++++  M+ +    D + Y  L++       VEEA  +  +M L  
Sbjct: 432 IIHMYGKQGRHDQAMQIYRDMKSSGRNPDAVTYTVLIDSLGKASKVEEAANVMSEM-LDA 490

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
             KP  ++Y+A++  Y   G  + A E F  M   G+  + +  + ++    +   +   
Sbjct: 491 GVKPTLHTYSALICAYAKAGKREEAEETFNCMRRSGIKPDRLAYSVMLDFFLRFNEMKKA 550

Query: 488 VRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ---ANPKLVA 538
           + ++   I  G  PD+ L   ++  +      + V ++I  +++    NP++++
Sbjct: 551 MGLYHEMIREGFTPDNGLYEVMMHALVRENMWDVVDRIIRDMEELSGMNPQVIS 604



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 107/482 (22%), Positives = 207/482 (42%), Gaps = 20/482 (4%)

Query: 227  TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
            T+   A+  NLF E  + +  M   G  P    Y  +L +  K  +V +V ++      +
Sbjct: 885  TLEAFAQAGNLF-EVQKIYNGMKAAGYFPTMHVYRIMLRLLCKCKRVRDVETMLCEMEEA 943

Query: 287  GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
            G++PD    + + K++    D+  +  + Q+++   ++P+   YNTL+    +  +P   
Sbjct: 944  GFQPDLQICNSILKLYLGIEDFKSMGIIYQKIQDASLKPDEETYNTLIIMYCRDRRPEEG 1003

Query: 347  RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
             SL ++M   GL P   T  +LI  + K R  + A EL+E +R N + +D   Y+ ++  
Sbjct: 1004 FSLMNKMRSLGLEPKLDTYRSLITAFNKQRMYEQAEELFEELRSNGYKLDRAFYHLMMKT 1063

Query: 407  CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
                G   +AE L   MK S   +P   +   ++  YG  G  + A  + + +   GV +
Sbjct: 1064 YRTSGDHRKAENLLAIMKESG-IEPTISTMHLLMVSYGKSGQPEEAENVLKNLRTTGVVL 1122

Query: 467  NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
            + +  + +I    K       +       + G++PD R+  C +   +L E + +   ++
Sbjct: 1123 DTLPYSSVIDAYLKKGDFKAGIEKLTEMKEAGIEPDHRIWTCFIRAATLSEGTNEAIVLL 1182

Query: 527  TCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLN 586
              LQ A   L   + L+++ S    +  ++    ++  E +A     N L+D+     L 
Sbjct: 1183 NALQDAGFDLP--IRLLKEKSESLVSEVDQCLERLEPVEDNAAFNLVNALVDLLWAFELR 1240

Query: 587  ERAHELLYLGTLYGLYPGLHNKTLD-EWSLDVRSLSVGAAQTA-LEEWMWTLAKIVLREE 644
              A  +  L     +Y     +  D +W  D R LS G+A  A L+ +  +   +VL   
Sbjct: 1241 ATASWVFQLAIKRSIYRHDIFRVADKDWGADFRKLSAGSALDASLQGYPESPKSVVLI-- 1298

Query: 645  VLPQLFLAETGTGTHKFSQ-GLATAFASHVNKLAAPFRQSEGKAGCFVATREDLVSWVQA 703
                       TGT +++   L +   + + ++ +PF   + + G  VA    L  W++ 
Sbjct: 1299 -----------TGTAEYNMVSLDSTLKACLWEMGSPFLPCKTRQGILVAKAHSLRMWLKD 1347

Query: 704  RP 705
             P
Sbjct: 1348 SP 1349



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 81/170 (47%)

Query: 221  DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
            D  TY+T+I    R    +E      +M   GL P   TY +++  + K    E+   L+
Sbjct: 983  DEETYNTLIIMYCRDRRPEEGFSLMNKMRSLGLEPKLDTYRSLITAFNKQRMYEQAEELF 1042

Query: 281  ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
            E   ++G+K D   + ++ K +  SGD+     +L  MK  G++P +   + L+ + GK+
Sbjct: 1043 EELRSNGYKLDRAFYHLMMKTYRTSGDHRKAENLLAIMKESGIEPTISTMHLLMVSYGKS 1102

Query: 341  GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
            G+P  A ++   +  +G+  D    +++I  Y K    K  +E    M+E
Sbjct: 1103 GQPEEAENVLKNLRTTGVVLDTLPYSSVIDAYLKKGDFKAGIEKLTEMKE 1152



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 122/264 (46%), Gaps = 16/264 (6%)

Query: 117  YNPRVRDLKLFARKLNDCDNTE--EAFLRAITEIPHQPTRE--NALLILN-SLKFWQKSY 171
            Y P +   ++  R L  C      E  L  + E   QP  +  N++L L   ++ ++   
Sbjct: 910  YFPTMHVYRIMLRLLCKCKRVRDVETMLCEMEEAGFQPDLQICNSILKLYLGIEDFKSMG 969

Query: 172  FFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITC 231
              +  I+  +L P E  +  + +   R  R  +    L N+M S  +E    TY ++IT 
Sbjct: 970  IIYQKIQDASLKPDEETYNTLIIMYCRDRRPEEGF-SLMNKMRSLGLEPKLDTYRSLITA 1028

Query: 232  AKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG---KVEEVLSLYERGVASGW 288
              +  ++++A E FE +   G   D   Y  ++  Y  SG   K E +L++ +    SG 
Sbjct: 1029 FNKQRMYEQAEELFEELRSNGYKLDRAFYHLMMKTYRTSGDHRKAENLLAIMKE---SGI 1085

Query: 289  KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG--KPGLA 346
            +P      +L   +G+SG  +    VL+ +++ GV  + + Y+++++A  K G  K G+ 
Sbjct: 1086 EPTISTMHLLMVSYGKSGQPEEAENVLKNLRTTGVVLDTLPYSSVIDAYLKKGDFKAGIE 1145

Query: 347  RSLFDEMVESGLTPDEKTLTALIK 370
            +    EM E+G+ PD +  T  I+
Sbjct: 1146 K--LTEMKEAGIEPDHRIWTCFIR 1167



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 71/387 (18%), Positives = 147/387 (37%), Gaps = 44/387 (11%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + Y V + SL    + +    + +EM+   ++    TYS +I    +    +EA E F
Sbjct: 460 DAVTYTVLIDSLGKASKVEEAANVMSEMLDAGVKPTLHTYSALICAYAKAGKREEAEETF 519

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
             M ++G+ PD + YS +LD + +  ++++ + LY   +  G+ PD   + V+       
Sbjct: 520 NCMRRSGIKPDRLAYSVMLDFFLRFNEMKKAMGLYHEMIREGFTPDNGLYEVMMHALVRE 579

Query: 306 GDYDGIRYVLQEMKSL-GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
             +D +  ++++M+ L G+ P ++        + K G    A  +    + +G   D + 
Sbjct: 580 NMWDVVDRIIRDMEELSGMNPQVIS-----SVLVKGGCYDHAAKMLKVAISNGYELDHEI 634

Query: 365 L-----------------------------------TALIKIYGKARWAKDALELWERMR 389
                                                ALI I  KA+    ALE +    
Sbjct: 635 FLSIMSSYSSSARYSEACELLEFSREHAPNDIQMITEALIIILCKAKKLDAALEEYRSKG 694

Query: 390 ENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNV 449
           E        +Y +L+  C    L + A ++F DM+ +   +     Y  M+++Y      
Sbjct: 695 ELGQFRSCTMYESLIQECIQNELFDVASQIFSDMRFNG-VESSECLYQGMVSVYCRMDLP 753

Query: 450 DNAIELFEEMSELGVAI--NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCG 507
           + A  L     + G+ +  ++     +++  GK +       + G    R  K D ++  
Sbjct: 754 ETAHHLLYHAEKNGIILDNDISVYIDIVETYGKLKIWQKAESLVGSLRQRCSKMDRKVWN 813

Query: 508 CLLSVVSLCETSEDVGKVITCLQQANP 534
            L+   +     E    +   + +  P
Sbjct: 814 ALIHAYAFSGCYERARAIFNTMMRDGP 840



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 61/278 (21%), Positives = 111/278 (39%), Gaps = 43/278 (15%)

Query: 325 PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384
           PN  +  T+L  +GKA +  LA  +F    ES +    +   A++ +Y +        EL
Sbjct: 213 PNARMVATILGVLGKANQEALAVEIFAR-AESSVGDTVQVYNAMMGVYARNGRFSKVKEL 271

Query: 385 WERMRENKWPMDFILYNTLLN-------------------------------------MC 407
            + MRE     D + +NTL+N                                      C
Sbjct: 272 LDLMRERGCVPDLVSFNTLINARMKSGAMEPNLALQLLNEVRRSGIRPDIITYNTLISAC 331

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
           +    +EEA  +F DM+ S  C+PD ++Y AM+++YG       A ELF+E+   G   +
Sbjct: 332 SRESNLEEAVAVFSDME-SHRCQPDLWTYNAMISVYGRCARARKAEELFKELESKGFFPD 390

Query: 468 VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVIT 527
            +    L+    +    + +  +    + RG   D+     ++ +       +   ++  
Sbjct: 391 AVTYNSLLYAFSREGNTEKVRDICEEMVKRGFGQDEMTYNTIIHMYGKQGRHDQAMQIYR 450

Query: 528 CLQQA--NPKLVAFLNLIEDNSTGFENIKEEFRNVIKD 563
            ++ +  NP  V +  LI  +S G  +  EE  NV+ +
Sbjct: 451 DMKSSGRNPDAVTYTVLI--DSLGKASKVEEAANVMSE 486


>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
          Length = 973

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 160/337 (47%), Gaps = 18/337 (5%)

Query: 191 NVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITC---------AKR------- 234
           N  +  L  G + +L  ++ + M ++++  D  TY+ +I+          AKR       
Sbjct: 193 NSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGE 252

Query: 235 -CNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
              L DEAIE    M   GL+PD  TY  +++ +    +  E   +    +  G KP+PI
Sbjct: 253 KARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPI 312

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
            ++ L   F   GD +    +  EM + G++ NL+++NTLL  + KAGK   A  +  EM
Sbjct: 313 TYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEM 372

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
           +E G+ PD +T + LI+ + + +    A EL + M++ K     + Y+ ++N     G +
Sbjct: 373 MEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNL 432

Query: 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTC 473
           +    +  +M ++   KP+   YT ++  +   G V+ +  + E M E G+  +V     
Sbjct: 433 QGTNAILREMVMNGL-KPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNS 491

Query: 474 LIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
           LI    KA+R+++        ++R ++P+    G  +
Sbjct: 492 LIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFI 528



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 109/427 (25%), Positives = 195/427 (45%), Gaps = 16/427 (3%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQ---LANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
           E I YN  +    F RQ   IEQ   + +EMV+  IE + I ++T++    +    ++A+
Sbjct: 310 EPITYNALIDG--FMRQGD-IEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKAL 366

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
           E  + M + G+ PD  TYS +++ + +   +     L +        P  + +SV+    
Sbjct: 367 EIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGL 426

Query: 303 GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
              G+  G   +L+EM   G++PN VVY TL+ A  K G+   +R + + M E G+ PD 
Sbjct: 427 CRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDV 486

Query: 363 KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED 422
               +LI  + KA+  ++A      M E +   +   Y   ++  +  G +E A+R F +
Sbjct: 487 FCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNE 546

Query: 423 MKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKAR 482
           M LS    P+   YTA++  +   GNV  A  +F  +    V  +V   + LI  L +  
Sbjct: 547 M-LSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNG 605

Query: 483 RIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI--TCLQQANPKLVAFL 540
           ++ +   +F    ++G+ P+      L+S        +   +++   C++  NP +V + 
Sbjct: 606 KMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYN 665

Query: 541 NLIEDNSTGFENIKEEFRNVIKDTEVDARRPFC---NCLID-ICRNRNLNERAHELLYLG 596
            LI+      E   E  +N+  D E     P C     ++D  C+++N    A +LL   
Sbjct: 666 ILIDGLCKAGE--IERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTA-AFQLLEEM 722

Query: 597 TLYGLYP 603
            L G+ P
Sbjct: 723 LLRGVPP 729



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 137/292 (46%), Gaps = 3/292 (1%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
            +++  F+ ++ + L P    + ++   S + G       QL  EM    I  D +TY+ 
Sbjct: 608 HEAFGIFSELQEKGLLPNAFTYNSLISGSCKQG-NVDKASQLLEEMCIKGINPDIVTYNI 666

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           +I    +    + A   F+ +   GL P+ VTY+A++D Y KS        L E  +  G
Sbjct: 667 LIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRG 726

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
             PD   ++V+     +   ++    + QEM   G   + V +NTL+E   K+GK   A 
Sbjct: 727 VPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGF-ASTVSFNTLIEGYCKSGKLQEAN 785

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
            L +EM+E    P+  T T+LI    KA    +A  LW  M+E         Y +LL+  
Sbjct: 786 HLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGY 845

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
            +IG + E   LFE+M ++   +PD  +Y  M++ Y   GNV  A +L +E+
Sbjct: 846 HNIGNMSEVSALFEEM-VAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEI 896



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 142/300 (47%), Gaps = 2/300 (0%)

Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS 261
           + ++ ++  NEM+S  +  +   Y+ +I    +     EA   F  +    ++ D  TYS
Sbjct: 536 EMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYS 595

Query: 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
            ++   +++GK+ E   ++      G  P+   ++ L     + G+ D    +L+EM   
Sbjct: 596 VLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIK 655

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
           G+ P++V YN L++ + KAG+   A++LFD++   GLTP+  T  A++  Y K++    A
Sbjct: 656 GINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAA 715

Query: 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
            +L E M     P D  +YN +LN C      E+A  LF++M    +      S+  ++ 
Sbjct: 716 FQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGF--ASTVSFNTLIE 773

Query: 442 IYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
            Y   G +  A  L EEM E     N +  T LI    KA  + +  R++    +R V P
Sbjct: 774 GYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMP 833



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/380 (21%), Positives = 172/380 (45%), Gaps = 9/380 (2%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           +++   + +K + L P   + Y+V +  L      Q    +  EMV N ++ + + Y+T+
Sbjct: 399 RAFELLDEMKKRKLAP-TVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTL 457

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
           +T   +    +E+    ERM + G++PD   Y++++  + K+ ++EE  +     +    
Sbjct: 458 MTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRL 517

Query: 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348
           +P+   +      + ++G+ +       EM S GV PN+ +Y  L+E   K G    A S
Sbjct: 518 RPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFS 577

Query: 349 LFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCA 408
           +F  ++   +  D +T + LI    +     +A  ++  ++E     +   YN+L++   
Sbjct: 578 VFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSC 637

Query: 409 DIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINV 468
             G V++A +L E+M +     PD  +Y  +++     G ++ A  LF+++   G+  N 
Sbjct: 638 KQGNVDKASQLLEEMCIKGI-NPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNC 696

Query: 469 MGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITC 528
           +    ++    K++      ++    + RGV PD  +   +L   + C   E   K +  
Sbjct: 697 VTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVIL---NFCCKEEKFEKALDL 753

Query: 529 LQQANPK----LVAFLNLIE 544
            Q+   K     V+F  LIE
Sbjct: 754 FQEMLEKGFASTVSFNTLIE 773



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 135/291 (46%), Gaps = 1/291 (0%)

Query: 212 EMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG 271
           EM+   ++ + ITY+ +I    R    ++A    + M   G+  + + ++ +L+   K+G
Sbjct: 301 EMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAG 360

Query: 272 KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYN 331
           K+E+ L + +  +  G +PD   +S+L +      +      +L EMK   + P ++ Y+
Sbjct: 361 KMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYS 420

Query: 332 TLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN 391
            ++  + + G      ++  EMV +GL P+    T L+  + K    +++  + ERMRE 
Sbjct: 421 VIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQ 480

Query: 392 KWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDN 451
               D   YN+L+        +EEA     +M L    +P+ ++Y A ++ Y   G ++ 
Sbjct: 481 GILPDVFCYNSLIIGFCKAKRMEEARTYLMEM-LERRLRPNAHTYGAFIDGYSKAGEMEI 539

Query: 452 AIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           A   F EM   GV  NV   T LI+   K   + +   VF   + R V  D
Sbjct: 540 ADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQD 590



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 91/193 (47%), Gaps = 5/193 (2%)

Query: 203 FQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSA 262
           FQL+E    EM+   +  D   Y+ I+    +   F++A++ F+ M + G     V+++ 
Sbjct: 716 FQLLE----EMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGF-ASTVSFNT 770

Query: 263 ILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG 322
           +++ Y KSGK++E   L E  +   + P+ + ++ L     ++G     + +  EM+   
Sbjct: 771 LIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERN 830

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382
           V P    Y +LL      G      +LF+EMV  G+ PD+ T   +I  Y +     +A 
Sbjct: 831 VMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEAC 890

Query: 383 ELWERMRENKWPM 395
           +L + +     PM
Sbjct: 891 KLKDEILVKGMPM 903



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 62/299 (20%), Positives = 131/299 (43%), Gaps = 18/299 (6%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           +++ +  ++   ++     EA+  F         P  ++ +++L    K  KVE    ++
Sbjct: 153 NSVIFDMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELFWKVF 212

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEM--------------KSL---GV 323
           +   A    PD   ++ +     + G+    + VL EM              +S+   G+
Sbjct: 213 DGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKARLLDEAIELKRSMVDKGL 272

Query: 324 QPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALE 383
            P+L  Y+ L+       +   A+ +  EM++ GL P+  T  ALI  + +    + A  
Sbjct: 273 VPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFR 332

Query: 384 LWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIY 443
           + + M       + I++NTLLN     G +E+A  + ++M +    +PD+ +Y+ ++  +
Sbjct: 333 IKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEM-MEKGVEPDSQTYSLLIEGH 391

Query: 444 GSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
             G N+  A EL +EM +  +A  V+  + +I  L +   +     +    +  G+KP+
Sbjct: 392 CRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPN 450



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 106/233 (45%), Gaps = 20/233 (8%)

Query: 290 PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSL 349
           P+ + F +L   + + G       V    K+   +P+L+  N+LL  + K  K  L   +
Sbjct: 152 PNSVIFDMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELFWKV 211

Query: 350 FDEMVESGLTPDEKTLTALIKIYGKARWAKDA----LELWERMR------ENKWPM---- 395
           FD M    + PD  T T +I  + K    KDA    LE+ E+ R      E K  M    
Sbjct: 212 FDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKARLLDEAIELKRSMVDKG 271

Query: 396 ---DFILYNTLLN-MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDN 451
              D   Y+ L+N  C +    E    L E + +    KP+  +Y A+++ +   G+++ 
Sbjct: 272 LVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVG--LKPEPITYNALIDGFMRQGDIEQ 329

Query: 452 AIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR 504
           A  + +EM   G+  N++    L+  + KA +++  + +    +++GV+PD +
Sbjct: 330 AFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQ 382


>gi|115459104|ref|NP_001053152.1| Os04g0488500 [Oryza sativa Japonica Group]
 gi|113564723|dbj|BAF15066.1| Os04g0488500 [Oryza sativa Japonica Group]
          Length = 801

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/387 (23%), Positives = 180/387 (46%), Gaps = 29/387 (7%)

Query: 184 PMETIFYNVTMKSLRFGRQ-------FQLIEQLANEMVSNEIELDNITYSTIITCAKRCN 236
           P   + YN+ + S+  G++         L E++  EM++    L+ +  +    C     
Sbjct: 209 PPGYVVYNIFIGSI-CGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVG 267

Query: 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS 296
            FD+A +  + M + G +PD  TYS ++     + KVE+   L++     G  PD   ++
Sbjct: 268 KFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYT 327

Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356
           +L   F ++G  +  +++ +EM+S+G  P +V Y  L+ A  KA +   A  +F  MV++
Sbjct: 328 ILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDA 387

Query: 357 GLTPDEKTLTALIKIYGKARWAKDALELWERM-----------------RENKWPMDFIL 399
           G  P++ T  AL+    KA     A E++ ++                 R    P + + 
Sbjct: 388 GCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAP-NVVT 446

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           Y  L++       V+ A  L + M LS  C+P++  Y A+++ +   G +D+A E+F +M
Sbjct: 447 YGALVDGLCKAHKVDHAHELLDAM-LSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQM 505

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETS 519
           ++ G   +V   T LI  + K  R+D  ++V    +     P+      ++  +     S
Sbjct: 506 TKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGES 565

Query: 520 EDVGKVITCLQQ--ANPKLVAFLNLIE 544
           E   K+++ +++   +P +V +  LI+
Sbjct: 566 EKALKLLSLMEEKGCSPNVVTYTALID 592



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 90/311 (28%), Positives = 144/311 (46%), Gaps = 19/311 (6%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  EM    +  D  TY+ +I    +  L ++A   FE M   G  P  VTY+A++  Y 
Sbjct: 310 LFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYL 369

Query: 269 KSGKVEEVLSLYERGVASGWKPDPI-----------------AFSVLGKMFGESGDYDGI 311
           K+ +V +   ++ R V +G +P+ +                 AF V  K+ G S   D  
Sbjct: 370 KAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSD 429

Query: 312 RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371
            Y   E +   + PN+V Y  L++ + KA K   A  L D M+ SG  P+     ALI  
Sbjct: 430 FYFPCEDRHT-LAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDG 488

Query: 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
           + KA     A E++ +M +  +      Y +L++     G ++ A ++   M L D C P
Sbjct: 489 FCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQM-LKDSCTP 547

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           +  +YTAM++     G  + A++L   M E G + NV+  T LI  LGKA +ID  + +F
Sbjct: 548 NVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLF 607

Query: 492 GVSIDRGVKPD 502
                +G  P+
Sbjct: 608 TQMSRKGCSPN 618



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/349 (24%), Positives = 156/349 (44%), Gaps = 18/349 (5%)

Query: 170 SYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTII 229
           S F+F       L P   + Y   +  L    +     +L + M+S+  E ++I Y  +I
Sbjct: 428 SDFYFPCEDRHTLAP-NVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALI 486

Query: 230 TCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWK 289
               +    D A E F +M K G +P   TY++++D   K G+++  + +  + +     
Sbjct: 487 DGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCT 546

Query: 290 PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSL 349
           P+ + ++ +       G+ +    +L  M+  G  PN+V Y  L++ +GKAGK  L+  L
Sbjct: 547 PNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDL 606

Query: 350 FDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL----- 404
           F +M   G +P+  T   LI     A     A  L   M++  WP     Y   +     
Sbjct: 607 FTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSK 666

Query: 405 NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
           +  A +G++EE E        S    P    Y  +++ +   G ++ A+EL +EM E+  
Sbjct: 667 SFIASLGILEEME--------SYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPS 718

Query: 465 AI---NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
           ++   N M  + LIQ L  A ++++  R++     RG  P+  +  CL+
Sbjct: 719 SVKTDNDMYAS-LIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLI 766



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 84/338 (24%), Positives = 153/338 (45%), Gaps = 18/338 (5%)

Query: 189 FYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERM 248
           F +   K  R+     +IE+        + +LD +  + +I+     + FDEA+ +  RM
Sbjct: 81  FAHALCKEGRWADALDMIER-------EDFKLDTVLCTHMISGLMEASYFDEAMSFLHRM 133

Query: 249 YKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY 308
                +P+ VTY  +L  + K  ++     +    +  G  P+P  F+ L   +    DY
Sbjct: 134 RCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDY 193

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAM-GKAGKPG-----LARSLFDEMVESGLTPDE 362
                +L  M + G  P  VVYN  + ++ G+   P      LA  ++ EM+ +    ++
Sbjct: 194 AYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNK 253

Query: 363 KTLTALIK-IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFE 421
             +    + + G  ++ K A +L + M    +  D   Y+ ++        VE+A  LF+
Sbjct: 254 VNVANFARCLCGVGKFDK-AFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQ 312

Query: 422 DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
           +MK+     PD Y+YT +++ +   G ++ A  LFEEM  +G +  V+  T LI    KA
Sbjct: 313 EMKMVGV-TPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKA 371

Query: 482 RRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETS 519
           +++     +F   +D G +P+D   G L  V  LC+  
Sbjct: 372 KQVPQANDIFHRMVDAGCRPNDVTYGAL--VDGLCKAG 407



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 6/125 (4%)

Query: 318 MKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK-AR 376
           +K  G +P+ V YN L++ +  AG+  L   +  EM ESG   D  T+        K  R
Sbjct: 31  LKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGR 90

Query: 377 WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY 436
           WA DAL++ ER     + +D +L   +++   +    +EA      M+ +  C P+  +Y
Sbjct: 91  WA-DALDMIER---EDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNS-CIPNVVTY 145

Query: 437 TAMLN 441
             +L+
Sbjct: 146 RTLLS 150



 Score = 40.8 bits (94), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 38/182 (20%), Positives = 78/182 (42%), Gaps = 14/182 (7%)

Query: 287 GWKPDPIAFSVLGKMFGESGDYD-GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGL 345
           G++P  + ++ L ++   +G  D G R V +EM   G   +         A+ K G+   
Sbjct: 35  GYRPSKVTYNALVQVLSSAGQVDLGFR-VQKEMSESGFCMDRFTVGCFAHALCKEGRWAD 93

Query: 346 ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405
           A    D +       D    T +I    +A +  +A+    RMR N    + + Y TLL+
Sbjct: 94  A---LDMIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLS 150

Query: 406 MCADIGLVEEAE----RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461
                G +++ +    +   +M +++ C P+   + ++++ Y +  +   A +L   M+ 
Sbjct: 151 -----GFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTT 205

Query: 462 LG 463
            G
Sbjct: 206 CG 207


>gi|297849642|ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338544|gb|EFH68961.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 667

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/316 (26%), Positives = 158/316 (50%), Gaps = 1/316 (0%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
            + YN  +  +       L   L  +M    ++ D  TYSTII    R    D AI  F+
Sbjct: 170 VVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDGCIDAAISLFK 229

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
            M   G+    VTY++++    K+GK  + + L +   +    P+ I F+VL  +F + G
Sbjct: 230 EMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEG 289

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
                  + +EM + G+ PN + YN+L++      +   A ++ D MV +  +PD  T T
Sbjct: 290 KLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCSPDIVTFT 349

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
           +LIK Y K +   + ++L+ ++ +     + + Y+ L+      G +E AE LF++M +S
Sbjct: 350 SLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQEM-VS 408

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
               PD  +Y  +L+     G ++ A+E+FE++ +  + ++++  T +I+ + K  +++D
Sbjct: 409 LGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCKGGKVED 468

Query: 487 LVRVFGVSIDRGVKPD 502
              +F     +GVKP+
Sbjct: 469 AWNLFCSLPCKGVKPN 484



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/335 (25%), Positives = 158/335 (47%), Gaps = 7/335 (2%)

Query: 219 ELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS 278
           E D  T++T+I      +   EA+    RM + G  P+ VTY++I++   KSG     L 
Sbjct: 132 EPDTTTFNTLINGLCLESKVSEAVVLVARMVENGCQPNVVTYNSIVNGICKSGDTSLALD 191

Query: 279 LYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMG 338
           L  +      K D   +S +       G  D    + +EM++ G++ +LV YN+L+  + 
Sbjct: 192 LLRKMDERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLC 251

Query: 339 KAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFI 398
           KAGK      L  +M    + P+  T   LI ++ K    ++A EL++ M       + I
Sbjct: 252 KAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTI 311

Query: 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458
            YN+L++       + EA  +  D+ + + C PD  ++T+++  Y     VD  ++LF +
Sbjct: 312 TYNSLMDGYCMQNRLSEANNML-DLMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRK 370

Query: 459 MSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCET 518
           +S+ G+  N +  + L+Q   ++ +++    +F   +  GV PD    G LL    LC+ 
Sbjct: 371 ISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLD--GLCDN 428

Query: 519 S--EDVGKVITCLQQA--NPKLVAFLNLIEDNSTG 549
              E   ++   LQ++  N  +V +  +IE    G
Sbjct: 429 GKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCKG 463



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 115/238 (48%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
           TI YN  M       +      + + MV N    D +T++++I    +    DE ++ F 
Sbjct: 310 TITYNSLMDGYCMQNRLSEANNMLDLMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFR 369

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
           ++ K GL+ + VTYS ++  + +SGK+E    L++  V+ G  PD + + +L     ++G
Sbjct: 370 KISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNG 429

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
             +    + ++++   +  ++V+Y  ++E M K GK   A +LF  +   G+ P+  T T
Sbjct: 430 KLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYT 489

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
            +I    K     +A  L  +M E+    +   YNTL+      G +  + +L E+MK
Sbjct: 490 VMISGLCKKGSLSEANILLRKMEEDGNEPNDCTYNTLIRAHLRDGDLTASAKLIEEMK 547



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 99/205 (48%), Gaps = 1/205 (0%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F  I  + L    T+ Y++ ++      + ++ E+L  EMVS  +  D +TY  ++   
Sbjct: 367 LFRKISKRGLVA-NTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGL 425

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
                 ++A+E FE + K+ +  D V Y+ I++   K GKVE+  +L+      G KP+ 
Sbjct: 426 CDNGKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCKGGKVEDAWNLFCSLPCKGVKPNV 485

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           + ++V+     + G       +L++M+  G +PN   YNTL+ A  + G    +  L +E
Sbjct: 486 MTYTVMISGLCKKGSLSEANILLRKMEEDGNEPNDCTYNTLIRAHLRDGDLTASAKLIEE 545

Query: 353 MVESGLTPDEKTLTALIKIYGKARW 377
           M   G + D  ++  +I +   A W
Sbjct: 546 MKSCGFSADASSIKMVIDMLSSAVW 570



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 84/176 (47%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           + +TYS ++    +    + A E F+ M   G++PD +TY  +LD    +GK+E+ L ++
Sbjct: 379 NTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIF 438

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
           E    S    D + ++++ +   + G  +    +   +   GV+PN++ Y  ++  + K 
Sbjct: 439 EDLQKSKMNLDIVMYTIIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKK 498

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMD 396
           G    A  L  +M E G  P++ T   LI+ + +      + +L E M+   +  D
Sbjct: 499 GSLSEANILLRKMEEDGNEPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSAD 554


>gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
          Length = 850

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 154/321 (47%), Gaps = 1/321 (0%)

Query: 191 NVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYK 250
           N+ + +L   ++ +  +   ++M    +  D +TY+T+I    R  L +EA E  + M  
Sbjct: 362 NIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSG 421

Query: 251 TGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDG 310
            GL P   TY+AI++   K+GK      + +  +  G  PD   +++L      + +   
Sbjct: 422 KGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMD 481

Query: 311 IRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK 370
              +  EM S GV P+LV ++ L+  + K G    A   F +M  +GL PD    T LI 
Sbjct: 482 AERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIG 541

Query: 371 IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCK 430
            + +     +AL++ + M E    +D + YNT+LN      ++ EA+ LF +M       
Sbjct: 542 GFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMT-ERGVF 600

Query: 431 PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRV 490
           PD Y++T ++N Y   GN++ A+ LFE M +  +  +V+    LI    K   ++ +  +
Sbjct: 601 PDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNEL 660

Query: 491 FGVSIDRGVKPDDRLCGCLLS 511
           +   I R + P+    G L++
Sbjct: 661 WNDMISRRIYPNHISYGILIN 681



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 155/317 (48%), Gaps = 9/317 (2%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIIT-CAKRCNLFDEAIEWFERM 248
           YN  +  L    ++   + + +EM+   +  D  TY+ ++  C +  N+ D A   F+ M
Sbjct: 431 YNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMD-AERIFDEM 489

Query: 249 YKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY 308
              G++PD V++SA++ + +K+G +++ L  +     +G  PD + +++L   F  +G  
Sbjct: 490 PSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVM 549

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
                V  EM   G   ++V YNT+L  + K      A  LF EM E G+ PD  T T L
Sbjct: 550 SEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTL 609

Query: 369 IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428
           I  Y K      A+ L+E M +     D + YNTL++       +E+   L+ DM +S  
Sbjct: 610 INGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDM-ISRR 668

Query: 429 CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ--C-LGKARRID 485
             P++ SY  ++N Y + G V  A  L++EM E G    ++ C  +++  C  G A + D
Sbjct: 669 IYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKAD 728

Query: 486 DLVRVFGVSIDRGVKPD 502
           + +      + +G+ PD
Sbjct: 729 EFLSNM---LLKGIVPD 742



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 138/295 (46%), Gaps = 1/295 (0%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           ++  E+V + ++++  T + +I    +    +    +   M + G+ PD VTY+ +++ Y
Sbjct: 344 EIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAY 403

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            + G +EE   L +     G KP    ++ +     ++G Y   + VL EM  +G+ P+ 
Sbjct: 404 CRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDT 463

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
             YN LL    +      A  +FDEM   G+ PD  + +ALI +  K      AL+ +  
Sbjct: 464 ATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRD 523

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           M+      D ++Y  L+      G++ EA ++ ++M L   C  D  +Y  +LN      
Sbjct: 524 MKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEM-LEQGCXLDVVTYNTILNGLCKEK 582

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            +  A ELF EM+E GV  +    T LI    K   ++  V +F + I R +KPD
Sbjct: 583 MLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPD 637



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 150/335 (44%), Gaps = 6/335 (1%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLA--NEMVSNEIELDNITYSTIIT 230
           +F  +K+  L P + + Y + +    F R   + E L   +EM+     LD +TY+TI+ 
Sbjct: 520 YFRDMKNAGLAP-DNVIYTILIGG--FCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILN 576

Query: 231 CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
              +  +  EA E F  M + G+ PD  T++ +++ Y K G + + ++L+E  +    KP
Sbjct: 577 GLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKP 636

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
           D + ++ L   F +  + + +  +  +M S  + PN + Y  L+      G    A  L+
Sbjct: 637 DVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLW 696

Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
           DEMVE G      T   ++K Y +A  A  A E    M       D I YNTL+N     
Sbjct: 697 DEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKE 756

Query: 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG 470
             ++ A  L   M+ S    PD  +Y  +LN +   G +  A  +  +M E GV  +   
Sbjct: 757 ENMDRAFALVNKMENSGLL-PDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRST 815

Query: 471 CTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRL 505
            T LI        + +  RV    + RG  PDD+ 
Sbjct: 816 YTSLINGHVTQNNLKEAFRVHDEMLQRGFVPDDKF 850



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 128/264 (48%), Gaps = 1/264 (0%)

Query: 239 DEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
           D A E ++ + ++G+  +  T + +++   K+ K+E   S        G  PD + ++ L
Sbjct: 340 DLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTL 399

Query: 299 GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
              +   G  +    ++  M   G++P +  YN ++  + K GK   A+ + DEM++ G+
Sbjct: 400 INAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGM 459

Query: 359 TPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAER 418
           +PD  T   L+    +     DA  +++ M       D + ++ L+ + +  G +++A +
Sbjct: 460 SPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALK 519

Query: 419 LFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL 478
            F DMK +    PDN  YT ++  +   G +  A+++ +EM E G  ++V+    ++  L
Sbjct: 520 YFRDMKNAGL-APDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGL 578

Query: 479 GKARRIDDLVRVFGVSIDRGVKPD 502
            K + + +   +F    +RGV PD
Sbjct: 579 CKEKMLSEADELFTEMTERGVFPD 602



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 70/310 (22%), Positives = 126/310 (40%), Gaps = 46/310 (14%)

Query: 160 ILNSL---KFWQKSYFFFNWIKSQNLFP---METIFYNVTMKSLRFGRQFQLIEQLANEM 213
           ILN L   K   ++   F  +  + +FP     T   N   K     +   L E     M
Sbjct: 574 ILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEM----M 629

Query: 214 VSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKV 273
           +   ++ D +TY+T+I    + +  ++  E +  M    + P+ ++Y  +++ Y   G V
Sbjct: 630 IQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCV 689

Query: 274 EEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTL 333
            E   L++  V  G++   I  + + K +  +G+       L  M   G+ P+ + YNTL
Sbjct: 690 SEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTL 749

Query: 334 LEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKW 393
           +    K      A +L ++M  SGL P                                 
Sbjct: 750 INGFIKEENMDRAFALVNKMENSGLLP--------------------------------- 776

Query: 394 PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAI 453
             D I YN +LN  +  G ++EAE +   M +     PD  +YT+++N + +  N+  A 
Sbjct: 777 --DVITYNVILNGFSRQGRMQEAELIMLKM-IERGVNPDRSTYTSLINGHVTQNNLKEAF 833

Query: 454 ELFEEMSELG 463
            + +EM + G
Sbjct: 834 RVHDEMLQRG 843



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 123/274 (44%), Gaps = 11/274 (4%)

Query: 235 CNLFDEAIEWFERM----YKTGLMPDEVTYSAILDVYAKSG--KVEEVLSLYERGVASGW 288
           C  F  +++ F  M     ++  +PD    + IL +  KSG  +VE V SL       G 
Sbjct: 229 CPNFKHSLQSFSAMIHILVRSRRLPD--AQAVILRMVRKSGVSRVEIVESLVLTYGNCG- 285

Query: 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348
             +P+ F +L + + ++          + +KS G+  ++   N+LL  + K G   LA  
Sbjct: 286 -SNPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWE 344

Query: 349 LFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCA 408
           ++ E+V SG+  +  TL  +I    K +  ++       M E     D + YNTL+N   
Sbjct: 345 IYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYC 404

Query: 409 DIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINV 468
             GL+EEA  L + M      KP  ++Y A++N     G    A  + +EM ++G++ + 
Sbjct: 405 RQGLLEEAFELMDSMS-GKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDT 463

Query: 469 MGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
                L+    +   + D  R+F     +GV PD
Sbjct: 464 ATYNILLVECCRNDNMMDAERIFDEMPSQGVVPD 497


>gi|168047776|ref|XP_001776345.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672305|gb|EDQ58844.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 503

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/274 (32%), Positives = 134/274 (48%), Gaps = 10/274 (3%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG-KVEEVLSLYER 282
            Y+T+ITC   CN +D  +E +  +    + PD VT+S +++   K G  ++EV +LY+ 
Sbjct: 107 VYNTLITCLTNCNRYD--LELYHNLAFYEVFPDSVTFSVLMNSAVKGGGSLKEVWALYQD 164

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
            V  G  P    F    K F ++G       +  EM+ L V  N+V+YN L++A G+ G+
Sbjct: 165 MVQRGISPSVSVFGTFIKAFCDAGRLKEALLITTEMEKLNVPFNVVIYNILIDAYGRVGQ 224

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD---ALELWERMRENKWPMDFIL 399
              A  L  EM E G+ P+  T  ALI  Y +A+  +    A  L E M  +    D + 
Sbjct: 225 LEEAEGLMTEMRERGIQPNVGTYNALITGYLEAKPKRQFVVAEGLIEEMEASGLYPDVVT 284

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           +  LL      GL E+AE++F  MK     +P++YSYTA++N Y      + A   FE +
Sbjct: 285 FTMLLGAYGHEGLTEQAEQVFNRMKARG-VQPNSYSYTALINAYAERRCPEKAARAFEMI 343

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGV 493
            + GV   V   T L   L   RR  DL  V  V
Sbjct: 344 RKQGVNPTVETYTAL---LDAYRRAGDLEMVQAV 374



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 90/371 (24%), Positives = 150/371 (40%), Gaps = 41/371 (11%)

Query: 182 LFPMETIFYNVTMKS-LRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDE 240
           +FP +++ ++V M S ++ G   + +  L  +MV   I      + T I          E
Sbjct: 134 VFP-DSVTFSVLMNSAVKGGGSLKEVWALYQDMVQRGISPSVSVFGTFIKAFCDAGRLKE 192

Query: 241 AIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY----ERGV------------ 284
           A+     M K  +  + V Y+ ++D Y + G++EE   L     ERG+            
Sbjct: 193 ALLITTEMEKLNVPFNVVIYNILIDAYGRVGQLEEAEGLMTEMRERGIQPNVGTYNALIT 252

Query: 285 ----------------------ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG 322
                                 ASG  PD + F++L   +G  G  +    V   MK+ G
Sbjct: 253 GYLEAKPKRQFVVAEGLIEEMEASGLYPDVVTFTMLLGAYGHEGLTEQAEQVFNRMKARG 312

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382
           VQPN   Y  L+ A  +   P  A   F+ + + G+ P  +T TAL+  Y +A   +   
Sbjct: 313 VQPNSYSYTALINAYAERRCPEKAARAFEMIRKQGVNPTVETYTALLDAYRRAGDLEMVQ 372

Query: 383 ELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNI 442
            +W+ M+        + Y T+L+     G  +EA  L E+ K   + KPD   Y  +LN 
Sbjct: 373 AVWKSMKVEGCVATRVTYMTILDAFQKQGRYKEARDLIEEFKNQGH-KPDLMVYNMLLNS 431

Query: 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           Y  GG    A ++  EM   G   +      LI    + R     ++     ++RG  PD
Sbjct: 432 YMRGGRHVKASDILLEMKTAGFLPDSFTYCTLIYGFLRVRDQTKALKYHREMMNRGQLPD 491

Query: 503 DRLCGCLLSVV 513
            +    L +++
Sbjct: 492 PKTYAKLRAIL 502



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 107/242 (44%), Gaps = 10/242 (4%)

Query: 312 RYVLQEMKSLG---VQPNLVVYNTLLEAMGKAGKP-GLARSLFDEMVESGLTPDEKTLTA 367
           RY L+   +L    V P+ V ++ L+ +  K G       +L+ +MV+ G++P       
Sbjct: 120 RYDLELYHNLAFYEVFPDSVTFSVLMNSAVKGGGSLKEVWALYQDMVQRGISPSVSVFGT 179

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
            IK +  A   K+AL +   M +   P + ++YN L++    +G +EEAE L  +M+   
Sbjct: 180 FIKAFCDAGRLKEALLITTEMEKLNVPFNVVIYNILIDAYGRVGQLEEAEGLMTEMRERG 239

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAI---ELFEEMSELGVAINVMGCTCLIQCLGKARRI 484
             +P+  +Y A++  Y         +    L EEM   G+  +V+  T L+   G     
Sbjct: 240 -IQPNVGTYNALITGYLEAKPKRQFVVAEGLIEEMEASGLYPDVVTFTMLLGAYGHEGLT 298

Query: 485 DDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCL--QQANPKLVAFLNL 542
           +   +VF     RGV+P+      L++  +     E   +    +  Q  NP +  +  L
Sbjct: 299 EQAEQVFNRMKARGVQPNSYSYTALINAYAERRCPEKAARAFEMIRKQGVNPTVETYTAL 358

Query: 543 IE 544
           ++
Sbjct: 359 LD 360


>gi|242074832|ref|XP_002447352.1| hypothetical protein SORBIDRAFT_06g033480 [Sorghum bicolor]
 gi|241938535|gb|EES11680.1| hypothetical protein SORBIDRAFT_06g033480 [Sorghum bicolor]
          Length = 888

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/359 (25%), Positives = 160/359 (44%), Gaps = 40/359 (11%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           ++ EM S+ I+ +N TYS +I      + F  A   FE M K+GL PD   Y+ +++ + 
Sbjct: 450 VSKEMESHGIKHNNKTYSMLINGFIHLHDFANAFSIFEDMIKSGLQPDRAIYNLLVEAFC 509

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           K G ++  + ++ER      +P    F  + + F  +GD       L  M+  G  P ++
Sbjct: 510 KMGNMDRAIRIFERMKKERMQPSNRTFRPIIEGFAVAGDMKRALDTLDLMRRSGCAPTVM 569

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            YN L+  + +  +   A S+ D+M  +G+ P+E T T +++ Y  +     A E + ++
Sbjct: 570 TYNALIHGLIRKHQVERAVSVLDKMSIAGIAPNEHTYTIIMRGYAASGDIGKAFEYFTKI 629

Query: 389 RENKWPMDFILYNTLLNMCADIGLVE---------------------------------- 414
           +E+   +D  +Y TLL  C   G ++                                  
Sbjct: 630 KESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDV 689

Query: 415 -EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTC 473
            EA  L + MK  D   P+ +++T+ +N     G++  A  + +EM+++G+  NV   T 
Sbjct: 690 WEAADLMKQMK-EDGIPPNIHTFTSYINACCKAGDMQRAENVIQEMADVGLKPNVKTFTT 748

Query: 474 LIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGC----LLSVVSLCETSEDVGKVITC 528
           LI+   K    D  ++ F      G+KPD+    C    LLS  ++ E S   G +  C
Sbjct: 749 LIKGWAKVSLPDRALKCFEEMKSAGLKPDEAAYHCLVTSLLSRATVMEGSTYTGILSVC 807



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 143/303 (47%), Gaps = 2/303 (0%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           I+ N+     + G      E+L  EM  + I+     Y +++          + +  FER
Sbjct: 360 IYSNIIHAHCQSG-NMDRAEELVREMEEDGIDAPIDVYHSMMHGYTVAQDEKKCLIVFER 418

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           + + G  P  ++Y  ++++Y K GKV + L++ +   + G K +   +S+L   F    D
Sbjct: 419 LKECGFRPSIISYGCLINLYVKIGKVPKALAVSKEMESHGIKHNNKTYSMLINGFIHLHD 478

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
           +     + ++M   G+QP+  +YN L+EA  K G    A  +F+ M +  + P  +T   
Sbjct: 479 FANAFSIFEDMIKSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMKKERMQPSNRTFRP 538

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           +I+ +  A   K AL+  + MR +      + YN L++       VE A  + + M ++ 
Sbjct: 539 IIEGFAVAGDMKRALDTLDLMRRSGCAPTVMTYNALIHGLIRKHQVERAVSVLDKMSIAG 598

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
              P+ ++YT ++  Y + G++  A E F ++ E G+ ++V     L++   K+ R+   
Sbjct: 599 IA-PNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSA 657

Query: 488 VRV 490
           + V
Sbjct: 658 LAV 660



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 126/260 (48%), Gaps = 1/260 (0%)

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
           FE M   G+ P+   +++++  YA +  +   LS  E   + G +   + +S+L   +G+
Sbjct: 276 FENMRARGIEPNAFVFTSLVHAYAVARDMRGALSCVEEMKSEGLEMTVVTYSILIAGYGK 335

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
           + D +    + +E K+     N ++Y+ ++ A  ++G    A  L  EM E G+      
Sbjct: 336 TNDAESADKLFKEAKTKLDNLNGIIYSNIIHAHCQSGNMDRAEELVREMEEDGIDAPIDV 395

Query: 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
             +++  Y  A+  K  L ++ER++E  +    I Y  L+N+   IG V +A  + ++M+
Sbjct: 396 YHSMMHGYTVAQDEKKCLIVFERLKECGFRPSIISYGCLINLYVKIGKVPKALAVSKEME 455

Query: 425 LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484
            S   K +N +Y+ ++N +    +  NA  +FE+M + G+  +      L++   K   +
Sbjct: 456 -SHGIKHNNKTYSMLINGFIHLHDFANAFSIFEDMIKSGLQPDRAIYNLLVEAFCKMGNM 514

Query: 485 DDLVRVFGVSIDRGVKPDDR 504
           D  +R+F       ++P +R
Sbjct: 515 DRAIRIFERMKKERMQPSNR 534



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 76/366 (20%), Positives = 148/366 (40%), Gaps = 42/366 (11%)

Query: 213 MVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK 272
           M +  IE +   +++++           A+   E M   GL    VTYS ++  Y K+  
Sbjct: 279 MRARGIEPNAFVFTSLVHAYAVARDMRGALSCVEEMKSEGLEMTVVTYSILIAGYGKTND 338

Query: 273 VEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEM-------------- 318
            E    L++         + I +S +     +SG+ D    +++EM              
Sbjct: 339 AESADKLFKEAKTKLDNLNGIIYSNIIHAHCQSGNMDRAEELVREMEEDGIDAPIDVYHS 398

Query: 319 ---------------------KSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
                                K  G +P+++ Y  L+    K GK   A ++  EM   G
Sbjct: 399 MMHGYTVAQDEKKCLIVFERLKECGFRPSIISYGCLINLYVKIGKVPKALAVSKEMESHG 458

Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417
           +  + KT + LI  +       +A  ++E M ++    D  +YN L+     +G ++ A 
Sbjct: 459 IKHNNKTYSMLINGFIHLHDFANAFSIFEDMIKSGLQPDRAIYNLLVEAFCKMGNMDRAI 518

Query: 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
           R+FE MK  +  +P N ++  ++  +   G++  A++  + M   G A  VM    LI  
Sbjct: 519 RIFERMK-KERMQPSNRTFRPIIEGFAVAGDMKRALDTLDLMRRSGCAPTVMTYNALIHG 577

Query: 478 LGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKV---ITCLQQANP 534
           L +  +++  V V       G+ P++     ++   +    S D+GK     T ++++  
Sbjct: 578 LIRKHQVERAVSVLDKMSIAGIAPNEHTYTIIMRGYA---ASGDIGKAFEYFTKIKESGL 634

Query: 535 KLVAFL 540
           KL  ++
Sbjct: 635 KLDVYI 640



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 109/238 (45%), Gaps = 5/238 (2%)

Query: 274 EEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTL 333
           + V+S +ER      KP    F ++   + + GD    R   + M++ G++PN  V+ +L
Sbjct: 239 QAVVSAFERIP----KPSRREFGLMVVYYAKRGDKHHARATFENMRARGIEPNAFVFTSL 294

Query: 334 LEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKW 393
           + A   A     A S  +EM   GL     T + LI  YGK   A+ A +L++  +    
Sbjct: 295 VHAYAVARDMRGALSCVEEMKSEGLEMTVVTYSILIAGYGKTNDAESADKLFKEAKTKLD 354

Query: 394 PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAI 453
            ++ I+Y+ +++     G ++ AE L  +M+      P +  Y +M++ Y    +    +
Sbjct: 355 NLNGIIYSNIIHAHCQSGNMDRAEELVREMEEDGIDAPIDV-YHSMMHGYTVAQDEKKCL 413

Query: 454 ELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
            +FE + E G   +++   CLI    K  ++   + V       G+K +++    L++
Sbjct: 414 IVFERLKECGFRPSIISYGCLINLYVKIGKVPKALAVSKEMESHGIKHNNKTYSMLIN 471


>gi|297839813|ref|XP_002887788.1| EMB2217 [Arabidopsis lyrata subsp. lyrata]
 gi|297333629|gb|EFH64047.1| EMB2217 [Arabidopsis lyrata subsp. lyrata]
          Length = 832

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 122/511 (23%), Positives = 218/511 (42%), Gaps = 34/511 (6%)

Query: 189 FYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERM 248
           + N+ M  L  G  ++  E +   M   +  LD  TY  II    +    D A + F++M
Sbjct: 277 YNNLMMLFLNKGLPYKAFE-IYESMEKTDSLLDGSTYELIIPSLAKSGRLDAAFKLFQQM 335

Query: 249 YKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY 308
            +  L P    +S+++D   K+G+++  + +Y      G +P    F  L   + ++G  
Sbjct: 336 KERKLRPSFSVFSSLVDSMGKAGRLDTSMKVYMEMQGFGHRPSATMFVSLIDSYAKAGKL 395

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
           D    +  EMK  G +PN  +Y  ++E+  K+GK  +A S+F +M ++G  P   T + L
Sbjct: 396 DTALRLWDEMKKSGFRPNFGLYTMIIESHAKSGKLEVAMSVFKDMEKAGFLPTPSTYSCL 455

Query: 369 IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428
           ++++  +     A++++  M           Y +LL + A+  LV+ A ++  +MK   Y
Sbjct: 456 LEMHAGSGQVDSAMKIYNSMTNAGLRPGLSSYISLLTLLANKRLVDVAGKILLEMKAMGY 515

Query: 429 ----CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484
               C  D      +L IY    +VD A++    M   G+  N      L +   K    
Sbjct: 516 SVDVCASD------VLMIYIKDASVDLALKWLRFMGSSGIKTNNFIIRQLFESCMKNGLY 569

Query: 485 DDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIE 544
           D    +    +    K D  L   +L+ +  C+  +   ++++ L     K  AF+  + 
Sbjct: 570 DSARPLLETLVHSAGKVDLVLYTSILAHLVRCQDEDKERQLMSILSATKHKAHAFMCGL- 628

Query: 545 DNSTGFEN--------IKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLG 596
              TG E         ++E ++ +  + E  A R F N L++         RA  +  + 
Sbjct: 629 --FTGPEQRKQPVLTFVREFYQGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVA 686

Query: 597 TLYGLYPGLHNKTLDE---WSLDVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQLFLAE 653
               L+P       D+   WSLDVR+LSVGAA  A+   +    K +L   V+P+     
Sbjct: 687 YENKLFP--KAIVFDQHIAWSLDVRNLSVGAALIAVVHTLHRFRKRMLYYGVVPRRIKLV 744

Query: 654 TGTGTHKFSQGLATAFASHVNKLAAPFRQSE 684
           TG         L    A  ++ + +PF  S+
Sbjct: 745 TGP-------TLKIVIAQVLSSVESPFEVSK 768



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 101/435 (23%), Positives = 195/435 (44%), Gaps = 34/435 (7%)

Query: 156 NALLILNSLKFWQK---SYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANE 212
           N + I  SLK  ++   +   F W K Q  +      Y V    L  GR F  I+ L  E
Sbjct: 167 NMVHITQSLKIVKEVDAALSLFRWAKKQPWYLPSDECYVVLFDGLNQGRDFVGIQSLFEE 226

Query: 213 MV---SNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAK 269
           MV   S+  +L    Y+ +I    +    + A   F++  ++G   D  TY+ ++ ++  
Sbjct: 227 MVQDSSSHGDLSFGAYNQVIQYLAKAEKLEVAFCCFKKAQESGCKIDTQTYNNLMMLFLN 286

Query: 270 SGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVV 329
            G   +   +YE    +    D   + ++     +SG  D    + Q+MK   ++P+  V
Sbjct: 287 KGLPYKAFEIYESMEKTDSLLDGSTYELIIPSLAKSGRLDAAFKLFQQMKERKLRPSFSV 346

Query: 330 YNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMR 389
           +++L+++MGKAG+   +  ++ EM   G  P      +LI  Y KA     AL LW+ M+
Sbjct: 347 FSSLVDSMGKAGRLDTSMKVYMEMQGFGHRPSATMFVSLIDSYAKAGKLDTALRLWDEMK 406

Query: 390 ENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNV 449
           ++ +  +F LY  ++   A  G +E A  +F+DM+ + +  P   +Y+ +L ++   G V
Sbjct: 407 KSGFRPNFGLYTMIIESHAKSGKLEVAMSVFKDMEKAGFL-PTPSTYSCLLEMHAGSGQV 465

Query: 450 DNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL------VRVFGVSIDRGVKPDD 503
           D+A++++  M+  G+   +     L+  L   R +D        ++  G S+D       
Sbjct: 466 DSAMKIYNSMTNAGLRPGLSSYISLLTLLANKRLVDVAGKILLEMKAMGYSVD------- 518

Query: 504 RLCGCLLSVVSLCETSEDVG-KVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIK 562
            +C   + ++ + + S D+  K +  +  +  K   F+            I++ F + +K
Sbjct: 519 -VCASDVLMIYIKDASVDLALKWLRFMGSSGIKTNNFI------------IRQLFESCMK 565

Query: 563 DTEVDARRPFCNCLI 577
           +   D+ RP    L+
Sbjct: 566 NGLYDSARPLLETLV 580


>gi|115471647|ref|NP_001059422.1| Os07g0300200 [Oryza sativa Japonica Group]
 gi|34394343|dbj|BAC84898.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50509027|dbj|BAD31989.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113610958|dbj|BAF21336.1| Os07g0300200 [Oryza sativa Japonica Group]
          Length = 1013

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/365 (23%), Positives = 181/365 (49%), Gaps = 4/365 (1%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           ++++ F   ++   L P +   Y   +  L   R+    + L +EM   E++ + + Y+ 
Sbjct: 296 EEAFGFKKDMEDYGLVP-DGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYAN 354

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           +I    R    DEA +  + M   G+ P+++TY  ++    K G+++    L ++ V   
Sbjct: 355 LIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDS 414

Query: 288 WKPDPIAFS-VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
            +PD I ++ ++   F      D  R +L EM++ G+ PN+  Y+ ++  + ++G+P  A
Sbjct: 415 HRPDTITYNLIIEGHFRHHSKKDAFR-LLSEMENAGISPNVYTYSIMIHGLCQSGEPEKA 473

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
             L +EM   GL P+      LI  Y +      A E++++M +     D   YN+L+  
Sbjct: 474 SDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFG 533

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
            + +G VEE+ + F  M+      P+ ++Y+ +++ Y   G++++A +L + M + G+  
Sbjct: 534 LSKVGRVEESTKYFAQMQERGLL-PNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKP 592

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           N +    L++   K+  I+ +   F   +D+GV  D+R+ G L+  +S     E   +V+
Sbjct: 593 NDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVL 652

Query: 527 TCLQQ 531
           + +++
Sbjct: 653 SGIEK 657



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 147/303 (48%), Gaps = 1/303 (0%)

Query: 201 RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTY 260
           R+F   +++  EM      L+ +TY+ +I    R    +EA  + + M   GL+PD  TY
Sbjct: 258 REFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTY 317

Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
            A+++   KS +  E  +L +    +  KP+ + ++ L   F   G+ D    +++EM +
Sbjct: 318 GALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVA 377

Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380
            GVQPN + Y+ L+  + K G+   A  L  +MV     PD  T   +I+ + +    KD
Sbjct: 378 AGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKD 437

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
           A  L   M       +   Y+ +++     G  E+A  L E+M      KP+ + Y  ++
Sbjct: 438 AFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGL-KPNAFVYAPLI 496

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
           + Y   GNV  A E+F++M+++ V  ++     LI  L K  R+++  + F    +RG+ 
Sbjct: 497 SGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLL 556

Query: 501 PDD 503
           P++
Sbjct: 557 PNE 559



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/355 (23%), Positives = 160/355 (45%), Gaps = 13/355 (3%)

Query: 147 EIPHQPTRENALLIL---NSLKFW-------QKSYFFFNWIKSQNLFPMETIFYNVTMKS 196
           EI  + T+ N L  L   NSL F        ++S  +F  ++ + L P E  +  +    
Sbjct: 510 EIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGY 569

Query: 197 LRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPD 256
           L+ G   +  EQL   M+   ++ +++ Y  ++    + +  ++    F+ M   G+M D
Sbjct: 570 LKNG-DLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLD 628

Query: 257 EVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQ 316
              Y  ++   + SG +E    +      +G  PD   +S L     ++ D +    +L 
Sbjct: 629 NRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILD 688

Query: 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
           EM   GV PN+V YN L++ + K+G    AR++F+ ++  GL P+  T T+LI    K  
Sbjct: 689 EMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVG 748

Query: 377 WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY 436
              +A  L+  M       D  +Y+ L   C+  G +E+A  L E+M L  +      S+
Sbjct: 749 DISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHASIS--SF 806

Query: 437 TAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
             +++ +   G +   ++L   +   G+  N +    +I  L +A ++ ++  +F
Sbjct: 807 NNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIF 861



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 139/318 (43%), Gaps = 7/318 (2%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           I Y+  ++ L    Q      L  +MV +    D ITY+ II    R +   +A      
Sbjct: 385 ITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSE 444

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M   G+ P+  TYS ++    +SG+ E+   L E     G KP+   ++ L   +   G+
Sbjct: 445 MENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGN 504

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
                 +  +M  + V P+L  YN+L+  + K G+   +   F +M E GL P+E T + 
Sbjct: 505 VSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSG 564

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           LI  Y K    + A +L +RM +     + ++Y  LL        +E+    F+ M L  
Sbjct: 565 LIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSM-LDQ 623

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
               DN  Y  +++   S GN++ A  +   + + G   +V   + LI  L K     D 
Sbjct: 624 GVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTA---DR 680

Query: 488 VRVFGVSID---RGVKPD 502
            + FG+  +   +GV P+
Sbjct: 681 EKAFGILDEMSKKGVDPN 698



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 105/228 (46%), Gaps = 3/228 (1%)

Query: 276 VLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLE 335
           VL+   R ++      P    VL   + +SG       V+  M+  G+ P++   N LL+
Sbjct: 158 VLASIHRALSDSGHRSPAVLDVLVDTYKKSGRVQDAAEVVLMMRDRGMAPSIRCCNALLK 217

Query: 336 AMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPM 395
            + +A    L   + + MV +G++PD  T + LI+ Y K R    A ++   MRE    +
Sbjct: 218 DLLRADAMALLWKVREFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGL 277

Query: 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDY-CKPDNYSYTAMLNIYGSGGNVDNAIE 454
           + + YN L+      G VEEA    +DM+  DY   PD ++Y A++N        + A  
Sbjct: 278 NTVTYNVLIAGLCRSGAVEEAFGFKKDME--DYGLVPDGFTYGALINGLCKSRRSNEAKA 335

Query: 455 LFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           L +EMS   +  NV+    LI    +    D+  ++    +  GV+P+
Sbjct: 336 LLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPN 383



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 107/233 (45%), Gaps = 1/233 (0%)

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
            ++   K+     +A E    M   G+ P     +A+L    ++  +  +  + E  V +
Sbjct: 179 VLVDTYKKSGRVQDAAEVVLMMRDRGMAPSIRCCNALLKDLLRADAMALLWKVREFMVGA 238

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G  PD   +S L + + +  ++D  + VL EM+  G   N V YN L+  + ++G    A
Sbjct: 239 GISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEA 298

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
                +M + GL PD  T  ALI    K+R + +A  L + M   +   + ++Y  L++ 
Sbjct: 299 FGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDG 358

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
               G  +EA ++ ++M ++   +P+  +Y  ++      G +D A  L ++M
Sbjct: 359 FMREGNADEAFKMIKEM-VAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQM 410



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 56/273 (20%), Positives = 108/273 (39%), Gaps = 19/273 (6%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           FN I ++ L P    + ++   S + G        L NEM++  I  D   YS + T   
Sbjct: 722 FNSILAKGLVPNCVTYTSLIDGSCKVGDISNAF-YLYNEMLATGITPDAFVYSVLTTGCS 780

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
                ++A+   E M+  G      +++ ++D + K GK++E L L    +  G  P+ +
Sbjct: 781 SAGDLEQAMFLIEEMFLRG-HASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNAL 839

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
               +     E+G    +  +  E++    +     ++                SLF +M
Sbjct: 840 TIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFS----------------SLFMDM 883

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
           +  G  P +  +  +I+ + K      AL L + +     PM    Y  +++     G +
Sbjct: 884 INQGKIPLD-VVDDMIRDHCKEGNLDKALMLRDVIVAKSAPMGCSSYLAIVDNLCRKGKL 942

Query: 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
            EA  L ++M     C  +N     + N++ SG
Sbjct: 943 SEALNLLKEMDKRGICPSENQCLILLTNLHTSG 975


>gi|357164338|ref|XP_003580022.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Brachypodium distachyon]
          Length = 966

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 156/328 (47%), Gaps = 22/328 (6%)

Query: 195 KSLRFGRQFQLIEQ---LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKT 251
           K + F  Q + +E+   L  EM    +  D  TY+ +I    +  L ++A  WF+ M   
Sbjct: 457 KVITFLCQAKKVEKSFLLFQEMKRAGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSV 516

Query: 252 GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL------------- 298
           G  P+ VTY+A+L  Y KS ++ +   ++ R V +   P+ + +S L             
Sbjct: 517 GCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMVDAACYPNAVTYSALIDGLCKAGEIQKA 576

Query: 299 ----GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMV 354
                K+ G SG+ +   Y  +   +  + PN+V Y  L++ + KA K   A  L D M+
Sbjct: 577 CEVYEKLIGTSGNVESDFY-FEGNDTCTIAPNVVTYGALIDGLCKAQKVSDAHELLDAML 635

Query: 355 ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
            +G  P++    ALI  + K     +A E++ RM +  +      Y +L++     G ++
Sbjct: 636 AAGCEPNQIVYDALIDGFCKIGKIDNAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLD 695

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
            A ++  +M L+D C P+  +YTAM++     G ++ A+ L   M E G + NV+  T L
Sbjct: 696 LAMKVLSEM-LNDSCNPNVVTYTAMIDGLSKVGEIEKALNLLSLMEEKGCSPNVVTYTAL 754

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           I  LGK  + D  +++F     +G  P+
Sbjct: 755 IDGLGKTGKADASLKLFKQMNSKGCAPN 782



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 89/359 (24%), Positives = 167/359 (46%), Gaps = 26/359 (7%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQ-------FQLIEQLANEMVSNEIE 219
           +  +Y  FN + +    P   + YN+ + S+  G++         L+E++  EM++    
Sbjct: 357 YAYAYKLFNRMTTCG-SPPGYVAYNIFIGSI-CGQEELPNAELLDLVEKVYEEMLAASCV 414

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
           L+ +  +    C      F++A +  + M + G +PD  TY+ ++    ++ KVE+   L
Sbjct: 415 LNKVNTANFSRCLCGVGKFEKAFQILKEMMRKGFVPDTSTYTKVITFLCQAKKVEKSFLL 474

Query: 280 YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
           ++    +G  PD   +++L   F ++G  +  R    EM+S+G  PN+V Y  LL A  K
Sbjct: 475 FQEMKRAGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLK 534

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM--RENKWPMDF 397
           + +   A  +F  MV++   P+  T +ALI    KA   + A E++E++         DF
Sbjct: 535 SKQLIQAHDIFHRMVDAACYPNAVTYSALIDGLCKAGEIQKACEVYEKLIGTSGNVESDF 594

Query: 398 --------------ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIY 443
                         + Y  L++       V +A  L + M L+  C+P+   Y A+++ +
Sbjct: 595 YFEGNDTCTIAPNVVTYGALIDGLCKAQKVSDAHELLDAM-LAAGCEPNQIVYDALIDGF 653

Query: 444 GSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
              G +DNA E+F  M++ G   +V   T LI  + K  R+D  ++V    ++    P+
Sbjct: 654 CKIGKIDNAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPN 712



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 157/344 (45%), Gaps = 43/344 (12%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           +TY  +I    +     +A E  + M   G  P+++ Y A++D + K GK++    ++ R
Sbjct: 609 VTYGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEVFLR 668

Query: 283 GVASGWKPDPIAF-SVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG 341
               G+ P    + S++ +MF + G  D    VL EM +    PN+V Y  +++ + K G
Sbjct: 669 MTKCGYLPSVHTYTSLIDRMF-KDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSKVG 727

Query: 342 KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYN 401
           +   A +L   M E G +P+  T TALI   GK   A  +L+L+++M       +++ Y 
Sbjct: 728 EIEKALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSKGCAPNYVTYR 787

Query: 402 TLLNMCADIGLVEEAERLFEDMKLSD--------YCKPDNYS------------------ 435
            L+N C   GL++EA  L ++MK +         +C    +S                  
Sbjct: 788 VLINHCCAAGLLDEAHLLLDEMKHTHWPKHLQGYHCAVQGFSKKFIASLGLLEEMESHET 847

Query: 436 ------YTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC---TCLIQCLGKARRIDD 486
                 Y  +++ +   G ++ A+EL +E+ E+  ++N+        LIQ L  A ++++
Sbjct: 848 VPIAPVYGMLIDSFSKAGRLETALELHKELVEVSSSLNMTSTGMYASLIQALCLASQVEE 907

Query: 487 LVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQ 530
              ++     +G+ PD      L+  VSL +   +V K    LQ
Sbjct: 908 AFTLYTEMTRKGIVPD------LIVFVSLVKGLIEVNKWDEALQ 945



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/322 (22%), Positives = 125/322 (38%), Gaps = 42/322 (13%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
           N +   +  LD +  + +I+     +LF+EA+ +  RM     +P+ VTY  +L  + K 
Sbjct: 260 NMLEKEDFNLDTVLCTQMISGLMEASLFNEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKK 319

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
            +      +    +  G  P+P  F+ L   +  +GDY     +   M + G  P  V Y
Sbjct: 320 KQFGWCKRIINMMMTEGCNPNPSLFNSLVHGYCNAGDYAYAYKLFNRMTTCGSPPGYVAY 379

Query: 331 NTLL-----------------------------------------EAMGKAGKPGLARSL 349
           N  +                                           +   GK   A  +
Sbjct: 380 NIFIGSICGQEELPNAELLDLVEKVYEEMLAASCVLNKVNTANFSRCLCGVGKFEKAFQI 439

Query: 350 FDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCAD 409
             EM+  G  PD  T T +I    +A+  + +  L++ M+      D   Y  L++    
Sbjct: 440 LKEMMRKGFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDVYTYTILIDSFCK 499

Query: 410 IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVM 469
            GL+E+A   F++M+ S  C P+  +YTA+L+ Y     +  A ++F  M +     N +
Sbjct: 500 AGLIEQARSWFDEMR-SVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMVDAACYPNAV 558

Query: 470 GCTCLIQCLGKARRIDDLVRVF 491
             + LI  L KA  I     V+
Sbjct: 559 TYSALIDGLCKAGEIQKACEVY 580



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 80/368 (21%), Positives = 148/368 (40%), Gaps = 39/368 (10%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           FF W + Q  +      Y+   + L F    +  E+L  E+  ++ E+     + ++   
Sbjct: 120 FFLWAERQVGYSHTGACYDALAEILGFEDPARTAERLLREIGEDDREVLRRLLNVLVRRC 179

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            R  L+DEA+E   R+   G  P  VTY+A++ V A +G+VE    + +   ASG+  D 
Sbjct: 180 CRHGLWDEALEELGRLKDFGYRPSAVTYNALVQVLASAGQVEMGFRVQKEMSASGFCMDR 239

Query: 293 IAFSVLGKMFGESGDY-DGIRYV-------------------------------LQEMKS 320
                  +   + G + D +  +                               L  M+ 
Sbjct: 240 STIGYFAQALCKVGRWADALNMLEKEDFNLDTVLCTQMISGLMEASLFNEAMSFLHRMRC 299

Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380
               PN+V Y TLL    K  + G  + + + M+  G  P+     +L+  Y  A     
Sbjct: 300 NSCIPNVVTYRTLLSGFLKKKQFGWCKRIINMMMTEGCNPNPSLFNSLVHGYCNAGDYAY 359

Query: 381 ALELWERMRENKWPMDFILYNTLL-NMCA-----DIGLVEEAERLFEDMKLSDYCKPDNY 434
           A +L+ RM     P  ++ YN  + ++C      +  L++  E+++E+M L+  C  +  
Sbjct: 360 AYKLFNRMTTCGSPPGYVAYNIFIGSICGQEELPNAELLDLVEKVYEEM-LAASCVLNKV 418

Query: 435 SYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVS 494
           +           G  + A ++ +EM   G   +    T +I  L +A++++    +F   
Sbjct: 419 NTANFSRCLCGVGKFEKAFQILKEMMRKGFVPDTSTYTKVITFLCQAKKVEKSFLLFQEM 478

Query: 495 IDRGVKPD 502
              GV PD
Sbjct: 479 KRAGVNPD 486


>gi|145336953|ref|NP_176455.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806497|sp|Q3ECK2.2|PPR92_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62680, mitochondrial; Flags: Precursor
 gi|332195872|gb|AEE33993.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 548

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/342 (24%), Positives = 167/342 (48%), Gaps = 3/342 (0%)

Query: 161 LNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIEL 220
           L  +K       F + +KS+  FP   + +N  + ++   +++ ++  L  +M    I  
Sbjct: 61  LRDIKLNDAIDLFSDMVKSRP-FP-SIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRN 118

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D  T++ +I C   C     A+    +M K G  PD VT  ++++ + +  +V + +SL 
Sbjct: 119 DLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLV 178

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
           ++ V  G+KPD +A++ +     ++   +      +E++  G++PN+V Y  L+  +  +
Sbjct: 179 DKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNS 238

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
            +   A  L  +M++  +TP+  T +AL+  + K     +A EL+E M       D + Y
Sbjct: 239 SRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTY 298

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           ++L+N       ++EA ++F D+ +S  C  D  SY  ++N +     V++ ++LF EMS
Sbjct: 299 SSLINGLCLHDRIDEANQMF-DLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMS 357

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           + G+  N +    LIQ   +A  +D     F      G+ PD
Sbjct: 358 QRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPD 399



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 146/294 (49%), Gaps = 1/294 (0%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L ++MV    + D + Y+ II    +    ++A ++F+ + + G+ P+ VTY+A+++   
Sbjct: 177 LVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLC 236

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
            S +  +   L    +     P+ I +S L   F ++G     + + +EM  + + P++V
Sbjct: 237 NSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIV 296

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            Y++L+  +    +   A  +FD MV  G   D  +   LI  + KA+  +D ++L+  M
Sbjct: 297 TYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREM 356

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
            +     + + YNTL+      G V++A+  F  M       PD ++Y  +L      G 
Sbjct: 357 SQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGI-SPDIWTYNILLGGLCDNGE 415

Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           ++ A+ +FE+M +  + ++++  T +I+ + K  ++++   +F     +G+KPD
Sbjct: 416 LEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPD 469



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 157/326 (48%), Gaps = 5/326 (1%)

Query: 145 ITEIPHQPTRENALLILNSL---KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGR 201
           + EI ++P       I++SL   K    ++ FF  I+ + + P   + Y   +  L    
Sbjct: 181 MVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRP-NVVTYTALVNGLCNSS 239

Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS 261
           ++    +L ++M+  +I  + ITYS ++    +     EA E FE M +  + PD VTYS
Sbjct: 240 RWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYS 299

Query: 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
           ++++      +++E   +++  V+ G   D ++++ L   F ++   +    + +EM   
Sbjct: 300 SLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQR 359

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
           G+  N V YNTL++   +AG    A+  F +M   G++PD  T   L+         + A
Sbjct: 360 GLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKA 419

Query: 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
           L ++E M++ +  +D + Y T++      G VEEA  LF  + L    KPD  +YT M++
Sbjct: 420 LVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGL-KPDIVTYTTMMS 478

Query: 442 IYGSGGNVDNAIELFEEMSELGVAIN 467
              + G +     L+ +M + G+  N
Sbjct: 479 GLCTKGLLHEVEALYTKMKQEGLMKN 504



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 123/259 (47%), Gaps = 9/259 (3%)

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
           ++L  EMV   I+ D +TYS++I      +  DEA + F+ M   G + D V+Y+ +++ 
Sbjct: 280 KELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLING 339

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
           + K+ +VE+ + L+      G   + + ++ L + F ++GD D  +    +M   G+ P+
Sbjct: 340 FCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPD 399

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
           +  YN LL  +   G+   A  +F++M +  +  D  T T +I+   K    ++A  L+ 
Sbjct: 400 IWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFC 459

Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
            +       D + Y T+++     GL+ E E L+  MK     K D            S 
Sbjct: 460 SLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKND---------CTLSD 510

Query: 447 GNVDNAIELFEEMSELGVA 465
           G++  + EL ++M   G A
Sbjct: 511 GDITLSAELIKKMLSCGYA 529


>gi|125548803|gb|EAY94625.1| hypothetical protein OsI_16402 [Oryza sativa Indica Group]
          Length = 769

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/387 (23%), Positives = 180/387 (46%), Gaps = 29/387 (7%)

Query: 184 PMETIFYNVTMKSLRFGRQ-------FQLIEQLANEMVSNEIELDNITYSTIITCAKRCN 236
           P   + YN+ + S+  G++         L E++  EM++    L+ +  +    C     
Sbjct: 378 PPGYVVYNIFIGSI-CGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVG 436

Query: 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS 296
            FD+A +  + M + G +PD  TYS ++     + KVE+   L++     G  PD   ++
Sbjct: 437 KFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYT 496

Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356
           +L   F ++G  +  +++ +EM+S+G  P +V Y  L+ A  KA +   A  +F  MV++
Sbjct: 497 ILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDA 556

Query: 357 GLTPDEKTLTALIKIYGKARWAKDALELWERM-----------------RENKWPMDFIL 399
           G  P++ T  AL+    KA     A E++ ++                 R    P + + 
Sbjct: 557 GCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAP-NVVT 615

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           Y  L++       V+ A  L + M LS  C+P++  Y A+++ +   G +D+A E+F +M
Sbjct: 616 YGALVDGLCKAHKVDHAHELLDAM-LSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQM 674

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETS 519
           ++ G   +V   T LI  + K  R+D  ++V    +     P+      ++  +     S
Sbjct: 675 TKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGES 734

Query: 520 EDVGKVITCLQQ--ANPKLVAFLNLIE 544
           E   K+++ +++   +P +V +  LI+
Sbjct: 735 EKALKLLSLMEEKGCSPNVVTYTALID 761



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 134/290 (46%), Gaps = 19/290 (6%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  EM    +  D  TY+ +I    +  L ++A   FE M   G  P  VTY+A++  Y 
Sbjct: 479 LFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYL 538

Query: 269 KSGKVEEVLSLYERGVASGWKPDPI-----------------AFSVLGKMFGESGDYDGI 311
           K+ +V +   ++ R V +G +P+ +                 AF V  K+ G S   D  
Sbjct: 539 KAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSD 598

Query: 312 RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371
            Y   E +   + PN+V Y  L++ + KA K   A  L D M+ SG  P+     ALI  
Sbjct: 599 FYFPCEDRHT-LAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDG 657

Query: 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
           + KA     A E++ +M +  +      Y +L++     G ++ A ++   M L D C P
Sbjct: 658 FCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQM-LKDSCTP 716

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
           +  +YTAM++     G  + A++L   M E G + NV+  T LI  LG++
Sbjct: 717 NVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGQS 766



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/338 (24%), Positives = 153/338 (45%), Gaps = 18/338 (5%)

Query: 189 FYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERM 248
           F +   K  R+     +IE+        + +LD +  + +I+     + FDEA+ +  RM
Sbjct: 250 FAHALCKEGRWADALDMIER-------EDFKLDTVLCTHMISGLMEASYFDEAMSFLHRM 302

Query: 249 YKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY 308
                +P+ VTY  +L  + K  ++     +    +  G  P+P  F+ L   +    DY
Sbjct: 303 RCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDY 362

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAM-GKAGKPG-----LARSLFDEMVESGLTPDE 362
                +L  M + G  P  VVYN  + ++ G+   P      LA  ++ EM+ +    ++
Sbjct: 363 AYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNK 422

Query: 363 KTLTALIK-IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFE 421
             +    + + G  ++ K A +L + M    +  D   Y+ ++        VE+A  LF+
Sbjct: 423 VNVANFARCLCGVGKFDK-AFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQ 481

Query: 422 DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
           +MK+     PD Y+YT +++ +   G ++ A  LFEEM  +G +  V+  T LI    KA
Sbjct: 482 EMKMVGV-TPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKA 540

Query: 482 RRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETS 519
           +++     +F   +D G +P+D   G L  V  LC+  
Sbjct: 541 KQVPQANDIFHRMVDAGCRPNDVTYGAL--VDGLCKAG 576



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 75/368 (20%), Positives = 142/368 (38%), Gaps = 39/368 (10%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           FF W + Q  +      Y+    +L F  + +  E+L  E+   + E+     + ++   
Sbjct: 125 FFLWAERQVGYSHTGACYDALADALGFDGRARDAERLLREIGEEDREVLGRLLNVLVRRC 184

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            R  +++EA+E   R+   G  P +VTY+A++ V + +G+V+    + +    SG+  D 
Sbjct: 185 CRGGMWNEALEELGRLKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDR 244

Query: 293 IAFSVLGKMFGESGD--------------------------------YDGIRYVLQEMKS 320
                      + G                                 +D     L  M+ 
Sbjct: 245 FTVGCFAHALCKEGRWADALDMIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRC 304

Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380
               PN+V Y TLL    K  + G  + + + M+  G  P+     +L+  Y   +    
Sbjct: 305 NSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAY 364

Query: 381 ALELWERMRENKWPMDFILYNTLL-NMCAD-----IGLVEEAERLFEDMKLSDYCKPDNY 434
           A +L  RM     P  +++YN  + ++C         L++ AE+++ +M L+  C  +  
Sbjct: 365 AYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEM-LAANCVLNKV 423

Query: 435 SYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVS 494
           +           G  D A +L +EM   G   +    + +I  L  A +++    +F   
Sbjct: 424 NVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEM 483

Query: 495 IDRGVKPD 502
              GV PD
Sbjct: 484 KMVGVTPD 491



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 78/171 (45%), Gaps = 1/171 (0%)

Query: 170 SYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTII 229
           S F+F       L P   + Y   +  L    +     +L + M+S+  E ++I Y  +I
Sbjct: 597 SDFYFPCEDRHTLAP-NVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALI 655

Query: 230 TCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWK 289
               +    D A E F +M K G +P   TY++++D   K G+++  + +  + +     
Sbjct: 656 DGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCT 715

Query: 290 PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
           P+ + ++ +       G+ +    +L  M+  G  PN+V Y  L++ +G++
Sbjct: 716 PNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGQS 766



 Score = 43.5 bits (101), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 47/216 (21%), Positives = 90/216 (41%), Gaps = 11/216 (5%)

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
           GK E VL         G+  D +  +VLG +          R+ L   + +G       Y
Sbjct: 90  GKAERVLRR-----CRGFLTDSVVVAVLGAV--RDAPELCARFFLWAERQVGYSHTGACY 142

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
           + L +A+G  G+   A  L  E+ E       + L  L++   +     +ALE   R+++
Sbjct: 143 DALADALGFDGRARDAERLLREIGEEDREVLGRLLNVLVRRCCRGGMWNEALEELGRLKD 202

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
             +    + YN L+ + +  G V+   R+ ++M  S +C  D ++     +     G   
Sbjct: 203 FGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCM-DRFTVGCFAHALCKEGRWA 261

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
           +A+++ E        ++ + CT +I  L +A   D+
Sbjct: 262 DALDMIERED---FKLDTVLCTHMISGLMEASYFDE 294


>gi|297837161|ref|XP_002886462.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297332303|gb|EFH62721.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 550

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 166/342 (48%), Gaps = 3/342 (0%)

Query: 161 LNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIEL 220
           L  +K       F   +K++  FP   + +N  + ++   +++ ++  L  +M    I  
Sbjct: 61  LRDIKLHDAINLFREMVKTRP-FP-SIVDFNRLLSAIVKMKKYDVVISLGKKMEVLGIRN 118

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D  T++ +I C   C     A+    +M K G  PD VT  ++++ + +  +V + +SL 
Sbjct: 119 DLYTFNIVINCFCCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLV 178

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
           ++ V  G++PD +A++ +     ++   +      +E+   G++PN+V Y  L+  +  +
Sbjct: 179 DKMVEIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNS 238

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G+   A  L  +M++  +TP+  T +AL+  + K     +A E++E M       D + Y
Sbjct: 239 GRWNDAARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTY 298

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           ++L+N       ++EA ++F D+ +S  C PD  SY  ++N +     V++ ++LF +MS
Sbjct: 299 SSLINGLCLHDRIDEANQMF-DLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMS 357

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           + G+  N +    LIQ   +   +D     F      GV PD
Sbjct: 358 QRGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPD 399



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 151/294 (51%), Gaps = 1/294 (0%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L ++MV      D + Y+ II    +    ++A+++F+ + + G+ P+ VTY+A+++   
Sbjct: 177 LVDKMVEIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLC 236

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
            SG+  +   L    +     P+ I +S L   F ++G     + + +EM  + + P++V
Sbjct: 237 NSGRWNDAARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIV 296

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            Y++L+  +    +   A  +FD MV  G  PD  +   LI  + KA+  +D ++L+ +M
Sbjct: 297 TYSSLINGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKM 356

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
            +     + + YNTL+     +G V++A+  F  M  S    PD ++Y  +L      G 
Sbjct: 357 SQRGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMD-SFGVSPDIWTYNILLGGLCDNGL 415

Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           ++ A+ +FE+M +  + ++++  T +IQ + K  +++D   +F     +G+KPD
Sbjct: 416 LEKALVIFEDMQKSEMDLDIVTYTTVIQGMCKTGKVEDAWGLFCSLSLKGLKPD 469



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 154/326 (47%), Gaps = 5/326 (1%)

Query: 145 ITEIPHQPTRENALLILNSL---KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGR 201
           + EI ++P       I++SL   +    +  FF  I  + + P   + Y   +  L    
Sbjct: 181 MVEIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRP-NVVTYTALVNGLCNSG 239

Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS 261
           ++    +L  +M+  +I  + ITYS ++    +     EA E FE M +  + PD VTYS
Sbjct: 240 RWNDAARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYS 299

Query: 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
           ++++      +++E   +++  V+ G  PD ++++ L   F ++   +    + ++M   
Sbjct: 300 SLINGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQR 359

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
           G+  N V YNTL++   + G    A+  F +M   G++PD  T   L+         + A
Sbjct: 360 GLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGLCDNGLLEKA 419

Query: 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
           L ++E M++++  +D + Y T++      G VE+A  LF  + L    KPD  +YT M++
Sbjct: 420 LVIFEDMQKSEMDLDIVTYTTVIQGMCKTGKVEDAWGLFCSLSLKGL-KPDIVTYTTMMS 478

Query: 442 IYGSGGNVDNAIELFEEMSELGVAIN 467
              + G       L+ +M + G+  N
Sbjct: 479 GLCTKGLQHEVEALYTKMKQEGLMKN 504



 Score =  103 bits (256), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 130/264 (49%), Gaps = 7/264 (2%)

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
           +++  EMV   I+ D +TYS++I      +  DEA + F+ M   G  PD V+Y+ +++ 
Sbjct: 280 KEIFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLING 339

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
           + K+ +VE+ + L+ +    G   + + ++ L + F + GD D  +    +M S GV P+
Sbjct: 340 FCKAKRVEDGMKLFRKMSQRGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPD 399

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
           +  YN LL  +   G    A  +F++M +S +  D  T T +I+   K    +DA  L+ 
Sbjct: 400 IWTYNILLGGLCDNGLLEKALVIFEDMQKSEMDLDIVTYTTVIQGMCKTGKVEDAWGLFC 459

Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
            +       D + Y T+++     GL  E E L+  MK     K D     +ML +    
Sbjct: 460 SLSLKGLKPDIVTYTTMMSGLCTKGLQHEVEALYTKMKQEGLMKND-----SMLCL--GD 512

Query: 447 GNVDNAIELFEEMSELGVAINVMG 470
           G++  + EL ++M   G A +++G
Sbjct: 513 GDITISAELIKKMLSCGYAPSLLG 536



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 133/293 (45%), Gaps = 1/293 (0%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + YN  + SL   R+         E+    I  + +TY+ ++        +++A    
Sbjct: 189 DIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAARLL 248

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
             M K  + P+ +TYSA+LD + K+GKV E   ++E  V     PD + +S L       
Sbjct: 249 RDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLINGLCLH 308

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
              D    +   M S G  P++V YNTL+    KA +      LF +M + GL  +  T 
Sbjct: 309 DRIDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRGLVNNTVTY 368

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
             LI+ + +      A E + +M       D   YN LL    D GL+E+A  +FEDM+ 
Sbjct: 369 NTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGLCDNGLLEKALVIFEDMQK 428

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL 478
           S+    D  +YT ++      G V++A  LF  +S  G+  +++  T ++  L
Sbjct: 429 SEM-DLDIVTYTTVIQGMCKTGKVEDAWGLFCSLSLKGLKPDIVTYTTMMSGL 480



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/193 (21%), Positives = 92/193 (47%), Gaps = 1/193 (0%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F+ + S+  FP + + YN  +      ++ +   +L  +M    +  + +TY+T+I   
Sbjct: 317 MFDLMVSKGCFP-DVVSYNTLINGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYNTLIQGF 375

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +    D+A E+F +M   G+ PD  TY+ +L     +G +E+ L ++E    S    D 
Sbjct: 376 FQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGLCDNGLLEKALVIFEDMQKSEMDLDI 435

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           + ++ + +   ++G  +    +   +   G++P++V Y T++  +   G      +L+ +
Sbjct: 436 VTYTTVIQGMCKTGKVEDAWGLFCSLSLKGLKPDIVTYTTMMSGLCTKGLQHEVEALYTK 495

Query: 353 MVESGLTPDEKTL 365
           M + GL  ++  L
Sbjct: 496 MKQEGLMKNDSML 508


>gi|255661212|gb|ACU25775.1| pentatricopeptide repeat-containing protein [Bouchea fluminensis]
          Length = 426

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/287 (30%), Positives = 147/287 (51%), Gaps = 1/287 (0%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           TYST+IT   +  LFD+A+ W ++M +  +  D V YS ++++  K     + +S++ R 
Sbjct: 11  TYSTLITHFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLYDYSKAISIFSRL 70

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
             SG  PD +A++ +  +FG++  +   R ++ EM+ +GV P+ V Y+TLL    +  K 
Sbjct: 71  KRSGIVPDLVAYNSMINVFGKAKLFREARSLISEMRMVGVVPDTVSYSTLLTMYVENQKF 130

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
             A S+F EM E     D  T   +I +YG+   AK+A +L+  MR+     + + YNTL
Sbjct: 131 LEALSVFAEMREIKCLLDLTTCNIMIDVYGQLDMAKEADKLFWSMRKMGIEPNVVSYNTL 190

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           L +  D  L  EA  LF  M+  +  + +  +Y  M+ IYG     + A  L +EM   G
Sbjct: 191 LRVYGDAELFGEAIHLFRLMQRKN-IEQNVVTYNTMMMIYGKTLEHEKANNLIQEMHSRG 249

Query: 464 VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
           +  N +  + +I   GK  ++D    +F      GV+ D  L   ++
Sbjct: 250 IEPNAITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDHVLYQTMI 296



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 164/345 (47%), Gaps = 6/345 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K   + P + + YN  +      + F+    L +EM    +  D ++YS
Sbjct: 60  YSKAISIFSRLKRSGIVP-DLVAYNSMINVFGKAKLFREARSLISEMRMVGVVPDTVSYS 118

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY +    +E   L+      
Sbjct: 119 TLLTMYVENQKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLDMAKEADKLFWSMRKM 178

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   ++ N+V YNT++   GK  +   A
Sbjct: 179 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKA 238

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R +   +D +LY T++  
Sbjct: 239 NNLIQEMHSRGIEPNAITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDHVLYQTMIVA 298

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K     +PDN      ++I    G ++ A  +F +  + G   
Sbjct: 299 YERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATWVFRQAIDAGEVK 353

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
           ++     ++    K ++  ++V VF      G  PD  +   +L+
Sbjct: 354 DITVFERMVDLFSKYKKYPNVVEVFEKMRGLGYFPDSNVIALVLN 398



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 144/286 (50%), Gaps = 3/286 (1%)

Query: 198 RFGRQFQLIEQLA--NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMP 255
            FG++    + L+   +M  + +  D + YS +I  +++   + +AI  F R+ ++G++P
Sbjct: 18  HFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLYDYSKAISIFSRLKRSGIVP 77

Query: 256 DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVL 315
           D V Y+++++V+ K+    E  SL       G  PD +++S L  M+ E+  +     V 
Sbjct: 78  DLVAYNSMINVFGKAKLFREARSLISEMRMVGVVPDTVSYSTLLTMYVENQKFLEALSVF 137

Query: 316 QEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA 375
            EM+ +    +L   N +++  G+      A  LF  M + G+ P+  +   L+++YG A
Sbjct: 138 AEMREIKCLLDLTTCNIMIDVYGQLDMAKEADKLFWSMRKMGIEPNVVSYNTLLRVYGDA 197

Query: 376 RWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYS 435
               +A+ L+  M+      + + YNT++ +       E+A  L ++M  S   +P+  +
Sbjct: 198 ELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANNLIQEMH-SRGIEPNAIT 256

Query: 436 YTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
           Y+ +++I+G  G +D A  LF+++   GV I+ +    +I    +A
Sbjct: 257 YSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDHVLYQTMIVAYERA 302



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 124/261 (47%), Gaps = 1/261 (0%)

Query: 252 GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGI 311
           GL P   TYS ++  + K G  ++ LS  ++        D + +S L ++  +  DY   
Sbjct: 4   GLSPXRYTYSTLITHFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLYDYSKA 63

Query: 312 RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371
             +   +K  G+ P+LV YN+++   GKA     ARSL  EM   G+ PD  + + L+ +
Sbjct: 64  ISIFSRLKRSGIVPDLVAYNSMINVFGKAKLFREARSLISEMRMVGVVPDTVSYSTLLTM 123

Query: 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
           Y + +   +AL ++  MRE K  +D    N ++++   + + +EA++LF  M+     +P
Sbjct: 124 YVENQKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLDMAKEADKLFWSMRKMG-IEP 182

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           +  SY  +L +YG       AI LF  M    +  NV+    ++   GK    +    + 
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANNLI 242

Query: 492 GVSIDRGVKPDDRLCGCLLSV 512
                RG++P+      ++S+
Sbjct: 243 QEMHSRGIEPNAITYSTIISI 263



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/238 (21%), Positives = 111/238 (46%), Gaps = 31/238 (13%)

Query: 218 IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL 277
           IE + ++Y+T++       LF EAI  F  M +  +  + VTY+ ++ +Y K+ + E+  
Sbjct: 180 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKAN 239

Query: 278 SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
           +L +   + G +P+ I +S +  ++G+ G  D    + Q+++S GV+ + V+Y T++ A 
Sbjct: 240 NLIQEMHSRGIEPNAITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDHVLYQTMIVAY 299

Query: 338 GKAGKPGLARSLFDEM-------------------------------VESGLTPDEKTLT 366
            +AG    A+ L  E+                               +++G   D     
Sbjct: 300 ERAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFE 359

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
            ++ ++ K +   + +E++E+MR   +  D  +   +LN    +   ++A  ++ +M+
Sbjct: 360 RMVDLFSKYKKYPNVVEVFEKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVYLEMQ 417



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 103/247 (41%), Gaps = 36/247 (14%)

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G  P    +S L   FG+ G +D     LQ+M+   V  +LV+Y+ L+E         L+
Sbjct: 4   GLSPXRYTYSTLITHFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIE---------LS 54

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
           R L+D                    Y KA      + ++ R++ +    D + YN+++N+
Sbjct: 55  RKLYD--------------------YSKA------ISIFSRLKRSGIVPDLVAYNSMINV 88

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
                L  EA  L  +M++     PD  SY+ +L +Y        A+ +F EM E+   +
Sbjct: 89  FGKAKLFREARSLISEMRMVGVV-PDTVSYSTLLTMYVENQKFLEALSVFAEMREIKCLL 147

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           ++  C  +I   G+     +  ++F      G++P+      LL V    E   +   + 
Sbjct: 148 DLTTCNIMIDVYGQLDMAKEADKLFWSMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLF 207

Query: 527 TCLQQAN 533
             +Q+ N
Sbjct: 208 RLMQRKN 214



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 90/191 (47%), Gaps = 3/191 (1%)

Query: 355 ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
           E GL+P   T + LI  +GK     DAL   ++M +++ P D +LY+ L+ +   +    
Sbjct: 2   ERGLSPXRYTYSTLITHFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLYDYS 61

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
           +A  +F  +K S    PD  +Y +M+N++G       A  L  EM  +GV  + +  + L
Sbjct: 62  KAISIFSRLKRSGIV-PDLVAYNSMINVFGKAKLFREARSLISEMRMVGVVPDTVSYSTL 120

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN- 533
           +    + ++  + + VF    +     D   C  ++ V    + +++  K+   +++   
Sbjct: 121 LTMYVENQKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLDMAKEADKLFWSMRKMGI 180

Query: 534 -PKLVAFLNLI 543
            P +V++  L+
Sbjct: 181 EPNVVSYNTLL 191



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/242 (20%), Positives = 102/242 (42%), Gaps = 5/242 (2%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           P+  +    L +    + + ++   F  ++ +N+     + YN  M       + +    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNI-EQNVVTYNTMMMIYGKTLEHEKANN 240

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  EM S  IE + ITYSTII+   +    D A   F+++  +G+  D V Y  ++  Y 
Sbjct: 241 LIQEMHSRGIEPNAITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDHVLYQTMIVAYE 300

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           ++G V       +R +    +PD I       +   +G  +   +V ++    G   ++ 
Sbjct: 301 RAGLVAHA----KRLLHELKRPDNIPRDTAIHILAGAGRIEEATWVFRQAIDAGEVKDIT 356

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
           V+  +++   K  K      +F++M   G  PD   +  ++  YGK      A +++  M
Sbjct: 357 VFERMVDLFSKYKKYPNVVEVFEKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVYLEM 416

Query: 389 RE 390
           ++
Sbjct: 417 QD 418


>gi|297830278|ref|XP_002883021.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328861|gb|EFH59280.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 504

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/355 (25%), Positives = 171/355 (48%), Gaps = 13/355 (3%)

Query: 161 LNSLKFWQKSYFFFNWIKSQNLFPMETI-----FYNVTMKSLRFGRQFQLIEQLANEMVS 215
           L++L+F +    F   + S+   P+ +I       +V  K  RF     L EQ+    +S
Sbjct: 58  LHNLQFNEALDLFTRMVHSR---PLPSIVDFTRLLSVIAKMKRFDVVISLFEQMQILGIS 114

Query: 216 NEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEE 275
             +   NI  + +   ++ C     A  +  +M K G  PD VT++++L  +    ++E+
Sbjct: 115 PVLYTCNIVMNCVCRSSQPC----RASCFLGKMMKLGFEPDLVTFTSLLHGFCHWNRIED 170

Query: 276 VLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLE 335
            L+L+++ V  G++P+ + ++ L     ++   +    +  +M   G++PN+V YN+L+ 
Sbjct: 171 ALALFDQIVGMGFRPNVVTYTTLIHCLCKNRHLNHAVEIFNQMGDNGIRPNVVTYNSLVS 230

Query: 336 AMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPM 395
            + + G+   A  L  +M++ G+ P+  T TALI  + K     +A EL++ M +     
Sbjct: 231 GLCEIGRWSDAAWLLRDMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSVYP 290

Query: 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIEL 455
           D   Y  L+N     G ++EA ++F  M+ + Y  P+  +YT +++ +     V++  ++
Sbjct: 291 DVFTYTALINGLCTYGRLDEARQMFYLMESNGY-YPNEVTYTTLIHGFCKSKRVEDGTKI 349

Query: 456 FEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
           F EMS+ G+  N +  T LIQ      R D    VF     R   PD R    LL
Sbjct: 350 FYEMSQKGLVANTITYTVLIQGYCLVGRPDVAQEVFNQMGSRRAPPDIRTYNVLL 404



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/348 (25%), Positives = 153/348 (43%), Gaps = 7/348 (2%)

Query: 139 EAFLRAITEIPHQPTRENALLILNSLKFWQK---SYFFFNWIKSQNLFPMETIFYNVTMK 195
             FL  + ++  +P       +L+    W +   +   F+ I      P   + Y   + 
Sbjct: 137 SCFLGKMMKLGFEPDLVTFTSLLHGFCHWNRIEDALALFDQIVGMGFRP-NVVTYTTLIH 195

Query: 196 SLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMP 255
            L   R      ++ N+M  N I  + +TY+++++       + +A      M K G+ P
Sbjct: 196 CLCKNRHLNHAVEIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSDAAWLLRDMMKRGIQP 255

Query: 256 DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVL 315
           + +T++A++D + K GK+ E   LY+  +     PD   ++ L       G  D  R + 
Sbjct: 256 NVITFTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALINGLCTYGRLDEARQMF 315

Query: 316 QEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA 375
             M+S G  PN V Y TL+    K+ +      +F EM + GL  +  T T LI+ Y   
Sbjct: 316 YLMESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLVANTITYTVLIQGYCLV 375

Query: 376 RWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYS 435
                A E++ +M   + P D   YN LL+     G VE+A  +F+ M+  +    +  +
Sbjct: 376 GRPDVAQEVFNQMGSRRAPPDIRTYNVLLDGLCYNGYVEKALMIFKYMRKREM-DINIVT 434

Query: 436 YTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483
           YT ++      G V++A +LF  +   G+  NV+  T +I   G  RR
Sbjct: 435 YTIIIQGMCKVGKVEDAFDLFCSLFSKGMKPNVITYTTMIS--GFCRR 480


>gi|242055005|ref|XP_002456648.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
 gi|241928623|gb|EES01768.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
          Length = 702

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 104/449 (23%), Positives = 203/449 (45%), Gaps = 51/449 (11%)

Query: 103 SVLSLQRQKRSTYSYNPRVR------DLKLFARKLNDCDN-----TEEAFLRAITEIPHQ 151
           + L+  R   S    NP VR      D  + AR+ +D D      +  AF R I   P+ 
Sbjct: 101 AALAAFRDLPSLLGCNPGVRSHNTLLDAFVRARRYSDADAFFASLSHGAFGRRIA--PNL 158

Query: 152 PTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLAN 211
            T    L  L +     ++   F+ ++ + + P + + Y+  M  L    Q      L +
Sbjct: 159 QTYNIILRSLCARGDVDRAVSLFSSLRRRGVAP-DRVTYSTLMSGLAKHDQLDNALDLLD 217

Query: 212 EMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKT-GLMPDEVTYSAILDVYAKS 270
           EM +  ++ D + Y+ +++   R  +F++A++ +E++ +  G  P+  TY  +LD   K 
Sbjct: 218 EMPNYGVQADAVCYNALLSGCFRTGMFEKAMKVWEQLVRDPGASPNLATYKVMLDGLCKL 277

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
           G+ +E   ++ R +A+  + D + + +L      SGD D    V  +M   G+  ++ VY
Sbjct: 278 GRFKEAGEVWSRMMANNHQADTVTYGILIHGLCRSGDVDSAARVYSDMVKAGLVLDVSVY 337

Query: 331 NTLLEAMGKAGKPGLARSLFDE------------------MVESGL-------------- 358
           N+L++   + G+ G A   +D                   +++SG+              
Sbjct: 338 NSLIKGFCEVGRTGEAWKFWDSTGFSGIRQITTYNIMTKGLLDSGMVSEATELLKQLEND 397

Query: 359 ---TPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEE 415
              +PD+ T   LI    +  +A  A E+ E  R +   +D   Y++++N     G   +
Sbjct: 398 ASCSPDKVTFGTLIHGLCENGYANRAFEILEDARNSGEELDVFSYSSMINRFCKDGRTHD 457

Query: 416 AERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLI 475
           A  ++++M + D CKP+++ Y A++N +     +++AI+++ EM+  G    ++    LI
Sbjct: 458 ANEVYKNM-VKDGCKPNSHVYNALINGFCRVSKINDAIKIYIEMTSNGCCPTIITYNTLI 516

Query: 476 QCLGKARRIDDLVRVFGVSIDRGVKPDDR 504
             L KA +  +   +    ++RG KPD R
Sbjct: 517 DGLCKAEKYQEASSLTKEMLERGFKPDIR 545



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/341 (24%), Positives = 159/341 (46%), Gaps = 17/341 (4%)

Query: 165 KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSL----RFGRQFQLIEQLANEMVSNEIEL 220
           KFW  +   F+ I+       +   YN+  K L          +L++QL N+   +    
Sbjct: 355 KFWDST--GFSGIR-------QITTYNIMTKGLLDSGMVSEATELLKQLENDASCSP--- 402

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D +T+ T+I         + A E  E    +G   D  +YS++++ + K G+  +   +Y
Sbjct: 403 DKVTFGTLIHGLCENGYANRAFEILEDARNSGEELDVFSYSSMINRFCKDGRTHDANEVY 462

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
           +  V  G KP+   ++ L   F      +    +  EM S G  P ++ YNTL++ + KA
Sbjct: 463 KNMVKDGCKPNSHVYNALINGFCRVSKINDAIKIYIEMTSNGCCPTIITYNTLIDGLCKA 522

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
            K   A SL  EM+E G  PD +T  +LI+   + +    AL +W+ + +    +D +++
Sbjct: 523 EKYQEASSLTKEMLERGFKPDIRTYASLIRGLCRDKKVDVALRIWDEILDAGLQVDVMVH 582

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           N L++     G V+EA  ++ +MK  + C P+  +Y  +++ +   G++D A  L+  + 
Sbjct: 583 NILIHGLCSAGKVDEAFCIYLEMKEKN-CSPNLVTYNTLMDGFYEIGSIDKAASLWTAIL 641

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
           + G+  +++     I+ L    R  + V +    +  G+ P
Sbjct: 642 DNGLKPDIVTYNTRIKGLCSCNRTPEGVLLLNEVLATGIMP 682



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 73/332 (21%), Positives = 145/332 (43%), Gaps = 4/332 (1%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN+ ++SL           L + +    +  D +TYST+++   + +  D A++  + M 
Sbjct: 161 YNIILRSLCARGDVDRAVSLFSSLRRRGVAPDRVTYSTLMSGLAKHDQLDNALDLLDEMP 220

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS-GWKPDPIAFSVLGKMFGESGDY 308
             G+  D V Y+A+L    ++G  E+ + ++E+ V   G  P+   + V+     + G +
Sbjct: 221 NYGVQADAVCYNALLSGCFRTGMFEKAMKVWEQLVRDPGASPNLATYKVMLDGLCKLGRF 280

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
                V   M +   Q + V Y  L+  + ++G    A  ++ +MV++GL  D     +L
Sbjct: 281 KEAGEVWSRMMANNHQADTVTYGILIHGLCRSGDVDSAARVYSDMVKAGLVLDVSVYNSL 340

Query: 369 IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428
           IK + +     +A + W+    +        YN +     D G+V EA  L + ++    
Sbjct: 341 IKGFCEVGRTGEAWKFWDSTGFSGI-RQITTYNIMTKGLLDSGMVSEATELLKQLENDAS 399

Query: 429 CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLV 488
           C PD  ++  +++     G  + A E+ E+    G  ++V   + +I    K  R  D  
Sbjct: 400 CSPDKVTFGTLIHGLCENGYANRAFEILEDARNSGEELDVFSYSSMINRFCKDGRTHDAN 459

Query: 489 RVFGVSIDRGVKPDDRLCGCLLSVVSLCETSE 520
            V+   +  G KP+  +   L++    C  S+
Sbjct: 460 EVYKNMVKDGCKPNSHVYNALIN--GFCRVSK 489



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 83/183 (45%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           I YN  +  L    ++Q    L  EM+    + D  TY+++I    R    D A+  ++ 
Sbjct: 510 ITYNTLIDGLCKAEKYQEASSLTKEMLERGFKPDIRTYASLIRGLCRDKKVDVALRIWDE 569

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           +   GL  D + ++ ++     +GKV+E   +Y         P+ + ++ L   F E G 
Sbjct: 570 ILDAGLQVDVMVHNILIHGLCSAGKVDEAFCIYLEMKEKNCSPNLVTYNTLMDGFYEIGS 629

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
            D    +   +   G++P++V YNT ++ +    +      L +E++ +G+ P   T + 
Sbjct: 630 IDKAASLWTAILDNGLKPDIVTYNTRIKGLCSCNRTPEGVLLLNEVLATGIMPTVITWSI 689

Query: 368 LIK 370
           L++
Sbjct: 690 LVR 692


>gi|356561683|ref|XP_003549109.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 445

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/321 (25%), Positives = 156/321 (48%), Gaps = 1/321 (0%)

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           P  T  +N  + SL   +++  +  L  +   N I  D  T S +I C         A  
Sbjct: 58  PPPTFLFNNILSSLVKNKRYPTVISLFKQFEPNGITPDLCTLSILINCFCHLTHITFAFS 117

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
            F  + K G  P+ +T + ++      G+++  L  +++ VA G++ D +++  L     
Sbjct: 118 VFANILKRGYHPNAITLNTLIKGLCFCGEIKRALHFHDKVVAQGFQLDQVSYGTLINGLC 177

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
           ++G+   +  +L++++   V+P+LV+Y T++  + K    G A  L+ EM+  G++P+  
Sbjct: 178 KAGETKAVARLLRKLEGHSVKPDLVMYTTIIHCLCKNKLLGDACDLYSEMIVKGISPNVF 237

Query: 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
           T T LI  +      K+A  L   M+      D   +N L++  A  G ++EA  LFE+M
Sbjct: 238 TYTTLIHGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALAKEGKIDEAMSLFEEM 297

Query: 424 KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483
           K  +   P+  +YT++++      +++ AI L ++M E G+  NV   T L+  L K  R
Sbjct: 298 KHKNM-FPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPNVYSYTILLDALCKGGR 356

Query: 484 IDDLVRVFGVSIDRGVKPDDR 504
           +++  + F   + +G   + R
Sbjct: 357 LENAKQFFQHLLVKGYHLNVR 377



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 62/297 (20%), Positives = 132/297 (44%), Gaps = 2/297 (0%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           +++  F + + +Q  F ++ + Y   +  L    + + + +L  ++  + ++ D + Y+T
Sbjct: 148 KRALHFHDKVVAQG-FQLDQVSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDLVMYTT 206

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           II C  +  L  +A + +  M   G+ P+  TY+ ++  +   G ++E  SL        
Sbjct: 207 IIHCLCKNKLLGDACDLYSEMIVKGISPNVFTYTTLIHGFCIMGNLKEAFSLLNEMKLKN 266

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
             PD   F++L     + G  D    + +EMK   + PN+V Y +L++ + K      A 
Sbjct: 267 INPDVYTFNILIDALAKEGKIDEAMSLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAI 326

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
           +L  +M E G+ P+  + T L+    K    ++A + ++ +    + ++   YN ++N  
Sbjct: 327 ALCKKMKEQGIQPNVYSYTILLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMINGL 386

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
              GL  +   L   M+    C P+  ++  ++         D A +   EM   G+
Sbjct: 387 CKAGLFGDVMDLKSKME-GKGCMPNAITFKTIICALLEKDENDKAEKFLREMIARGL 442


>gi|224133034|ref|XP_002327945.1| predicted protein [Populus trichocarpa]
 gi|222837354|gb|EEE75733.1| predicted protein [Populus trichocarpa]
          Length = 1450

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 106/406 (26%), Positives = 183/406 (45%), Gaps = 34/406 (8%)

Query: 117 YNPRVRDLKLFARKLNDCDN---TEEAFLRAITEIPHQPTRENALLILNSL--------K 165
           Y+P  R L      L   +      E F RA      +P+ EN + + N++        K
Sbjct: 218 YSPNARMLSTILAVLGKANQEPLAVEVFTRA------EPSVENTVKVYNAMMGVYARSGK 271

Query: 166 FWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQF-QLIEQLANEMVSNEIELDNIT 224
           F  K    F+ ++ +   P    F  +    L+ G     L  +L  E+  + +  D IT
Sbjct: 272 F-NKVQELFDLMRERGCEPDLVSFNTLINARLKAGEMTPNLAIELLTEVRRSGLRPDIIT 330

Query: 225 YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAK---SGKVEEVLSLYE 281
           Y+T+I+   R +  +EA+  F+ M      PD  TY+A++ VY +   SGK E++ +  E
Sbjct: 331 YNTLISACSRASNLEEAVNVFDDMVAHHCEPDLWTYNAMISVYGRCGLSGKAEQLFNDLE 390

Query: 282 RGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG 341
              + G+ PD ++++     F   G+ + ++ + +EM  +G   + + YNT++   GK G
Sbjct: 391 ---SRGFFPDAVSYNSFLYAFAREGNVEKVKDICEEMVKIGFGKDEMTYNTMIHMYGKQG 447

Query: 342 KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYN 401
           +  LA  L+ +M  SG  PD  T T LI   GK    ++A  +   M           Y+
Sbjct: 448 QNDLALQLYRDMKSSGRNPDVITYTVLIDSLGKTNKIEEAAGMMSEMLNTGVKPTLRTYS 507

Query: 402 TLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461
            L+   A  G   EAE  F+ M L    +PD  +Y+ ML+I+        A+  ++EM  
Sbjct: 508 ALICGYAKAGKPVEAEETFDCM-LRSGTRPDQLAYSVMLDIHLRFNEPKRAMTFYKEMIH 566

Query: 462 LGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCG 507
            G+         +++ LG A +++D+ RV        V+  + +CG
Sbjct: 567 DGIMPEHSLYELMLRTLGNANKVEDIGRV--------VRDMEEVCG 604



 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 82/356 (23%), Positives = 167/356 (46%), Gaps = 6/356 (1%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLF--DEAIEWFER 247
           YN  M       +F  +++L + M     E D ++++T+I    +      + AIE    
Sbjct: 259 YNAMMGVYARSGKFNKVQELFDLMRERGCEPDLVSFNTLINARLKAGEMTPNLAIELLTE 318

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           + ++GL PD +TY+ ++   +++  +EE +++++  VA   +PD   ++ +  ++G  G 
Sbjct: 319 VRRSGLRPDIITYNTLISACSRASNLEEAVNVFDDMVAHHCEPDLWTYNAMISVYGRCGL 378

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
                 +  +++S G  P+ V YN+ L A  + G     + + +EMV+ G   DE T   
Sbjct: 379 SGKAEQLFNDLESRGFFPDAVSYNSFLYAFAREGNVEKVKDICEEMVKIGFGKDEMTYNT 438

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           +I +YGK      AL+L+  M+ +    D I Y  L++       +EEA  +  +M L+ 
Sbjct: 439 MIHMYGKQGQNDLALQLYRDMKSSGRNPDVITYTVLIDSLGKTNKIEEAAGMMSEM-LNT 497

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
             KP   +Y+A++  Y   G    A E F+ M   G   + +  + ++    +       
Sbjct: 498 GVKPTLRTYSALICGYAKAGKPVEAEETFDCMLRSGTRPDQLAYSVMLDIHLRFNEPKRA 557

Query: 488 VRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQA---NPKLVAFL 540
           +  +   I  G+ P+  L   +L  +      ED+G+V+  +++    NP+ ++++
Sbjct: 558 MTFYKEMIHDGIMPEHSLYELMLRTLGNANKVEDIGRVVRDMEEVCGMNPQAISYI 613



 Score =  103 bits (257), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 79/354 (22%), Positives = 159/354 (44%), Gaps = 16/354 (4%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSN-EIELDNIT- 224
           W +++  + W+  ++ +       +  +  L    Q    E LA E+ +  E  ++N   
Sbjct: 202 WHRAFEVYEWLNLRHWYSPNARMLSTILAVLGKANQ----EPLAVEVFTRAEPSVENTVK 257

Query: 225 -YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVE-----EVLS 278
            Y+ ++    R   F++  E F+ M + G  PD V+++ +++   K+G++      E+L+
Sbjct: 258 VYNAMMGVYARSGKFNKVQELFDLMRERGCEPDLVSFNTLINARLKAGEMTPNLAIELLT 317

Query: 279 LYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMG 338
              R   SG +PD I ++ L      + + +    V  +M +   +P+L  YN ++   G
Sbjct: 318 EVRR---SGLRPDIITYNTLISACSRASNLEEAVNVFDDMVAHHCEPDLWTYNAMISVYG 374

Query: 339 KAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFI 398
           + G  G A  LF+++   G  PD  +  + +  + +    +   ++ E M +  +  D +
Sbjct: 375 RCGLSGKAEQLFNDLESRGFFPDAVSYNSFLYAFAREGNVEKVKDICEEMVKIGFGKDEM 434

Query: 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458
            YNT+++M    G  + A +L+ DMK S    PD  +YT +++  G    ++ A  +  E
Sbjct: 435 TYNTMIHMYGKQGQNDLALQLYRDMKSSGR-NPDVITYTVLIDSLGKTNKIEEAAGMMSE 493

Query: 459 MSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSV 512
           M   GV   +   + LI    KA +  +    F   +  G +PD      +L +
Sbjct: 494 MLNTGVKPTLRTYSALICGYAKAGKPVEAEETFDCMLRSGTRPDQLAYSVMLDI 547



 Score = 99.0 bits (245), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 99/476 (20%), Positives = 199/476 (41%), Gaps = 18/476 (3%)

Query: 232  AKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291
            A+  N+F E  + +  M   G  P    Y  +  +  +  +V +V ++      +G+KPD
Sbjct: 896  ARAGNIF-EVKKIYHGMKAAGYFPSMHLYRVMAQLLCRGKQVRDVEAMLSEMEEAGFKPD 954

Query: 292  PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
               ++ + KM+    D+     + Q +K  G++P+   YN L+    +  +P     L D
Sbjct: 955  LSIWNSVLKMYVAIDDFRKTTQIYQRIKEDGLEPDEDTYNILIVMYCRDHRPKEGLVLMD 1014

Query: 352  EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411
            EM   GL P   T  +L+  +GK +  + A EL+E ++     +D   Y+ ++ +  + G
Sbjct: 1015 EMRTVGLEPKLDTYKSLVASFGKQQLVEQAEELFEELQSTGCKLDRSFYHIMMKIYRNSG 1074

Query: 412  LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC 471
               +A+RLF  MK  +  +P   +   ++  YGS G    A ++   + E    ++ +  
Sbjct: 1075 SHSKAQRLFSMMK-DEGVEPTIATMHLLMVSYGSSGQPQEAEKVLSNLKETDANLSTLPY 1133

Query: 472  TCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ 531
            + +I    +    +  ++      + G++PD R+  C +   SL + + +   ++  L+ 
Sbjct: 1134 SSVIDAYVRNGDYNAGIQKLKQVKEEGLEPDHRIWTCFIRAASLSQHTSEAILLLNALRD 1193

Query: 532  ANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHE 591
                L   + L+ +      +  +    +++    +A   F N L D+     L   A  
Sbjct: 1194 TGFDLP--IRLLTEKPEPLVSALDLCLEMLETLGDNAAFNFVNALEDLLWAFELRATASW 1251

Query: 592  LLYLGTLYGLYPGLHNKTLD-EWSLDVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQLF 650
            +  L     +Y     +  D +W  D R LS GAA  A  +      K V          
Sbjct: 1252 VFLLAIKRKIYRHDVFRVADKDWGADFRKLSGGAALDASLQGCPESPKSV---------- 1301

Query: 651  LAETGTGTHKFSQ-GLATAFASHVNKLAAPFRQSEGKAGCFVATREDLVSWVQARP 705
                 TGT +++   L +   + + ++ +PF   + ++G  +A    L  W++  P
Sbjct: 1302 --ALITGTAEYNMVSLDSTLKACLWEMGSPFLPCKTRSGLLIAKAHSLKMWLKDSP 1355



 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 85/420 (20%), Positives = 178/420 (42%), Gaps = 58/420 (13%)

Query: 142  LRAITEIPHQPTRENALLILNSLKFWQKSYFF-----FNWIKSQNLFPMETIFYNVTMKS 196
            ++ + +I  + ++ + LL+L++  F +    F     ++ +K+   FP     Y V  + 
Sbjct: 873  VQELQDIGFKISKSSILLMLDA--FARAGNIFEVKKIYHGMKAAGYFP-SMHLYRVMAQL 929

Query: 197  LRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPD 256
            L  G+Q + +E + +EM     + D   +++++      + F +  + ++R+ + GL PD
Sbjct: 930  LCRGKQVRDVEAMLSEMEEAGFKPDLSIWNSVLKMYVAIDDFRKTTQIYQRIKEDGLEPD 989

Query: 257  EVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQ 316
            E TY+ ++ +Y +  + +E L L                                   + 
Sbjct: 990  EDTYNILIVMYCRDHRPKEGLVL-----------------------------------MD 1014

Query: 317  EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
            EM+++G++P L  Y +L+ + GK      A  LF+E+  +G   D      ++KIY  + 
Sbjct: 1015 EMRTVGLEPKLDTYKSLVASFGKQQLVEQAEELFEELQSTGCKLDRSFYHIMMKIYRNSG 1074

Query: 377  WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY 436
                A  L+  M++          + L+      G  +EAE++  ++K +D        Y
Sbjct: 1075 SHSKAQRLFSMMKDEGVEPTIATMHLLMVSYGSSGQPQEAEKVLSNLKETD-ANLSTLPY 1133

Query: 437  TAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496
            +++++ Y   G+ +  I+  +++ E G+  +    TC I+    ++   + + +     D
Sbjct: 1134 SSVIDAYVRNGDYNAGIQKLKQVKEEGLEPDHRIWTCFIRAASLSQHTSEAILLLNALRD 1193

Query: 497  RGVKPDDRLCG----CLLSVVSLC-ETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFE 551
             G     RL       L+S + LC E  E +G         +     F+N +ED    FE
Sbjct: 1194 TGFDLPIRLLTEKPEPLVSALDLCLEMLETLG---------DNAAFNFVNALEDLLWAFE 1244



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 77/370 (20%), Positives = 145/370 (39%), Gaps = 42/370 (11%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           K+   FN ++S+  FP + + YN  + +       + ++ +  EMV      D +TY+T+
Sbjct: 381 KAEQLFNDLESRGFFP-DAVSYNSFLYAFAREGNVEKVKDICEEMVKIGFGKDEMTYNTM 439

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
           I    +    D A++ +  M  +G  PD +TY+ ++D   K+ K+EE   +    + +G 
Sbjct: 440 IHMYGKQGQNDLALQLYRDMKSSGRNPDVITYTVLIDSLGKTNKIEEAAGMMSEMLNTGV 499

Query: 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348
           KP    +S L   + ++G           M   G +P+ + Y+ +L+   +  +P  A +
Sbjct: 500 KPTLRTYSALICGYAKAGKPVEAEETFDCMLRSGTRPDQLAYSVMLDIHLRFNEPKRAMT 559

Query: 349 LFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE----NKWPMDFIL----- 399
            + EM+  G+ P+      +++  G A   +D   +   M E    N   + +IL     
Sbjct: 560 FYKEMIHDGIMPEHSLYELMLRTLGNANKVEDIGRVVRDMEEVCGMNPQAISYILVKGDC 619

Query: 400 YNTLLNMC----------------------ADIGLVEEAERLFEDMKLSDYCKPDNYSYT 437
           Y+    M                       +  G    A  L E +K     +       
Sbjct: 620 YDEAAKMLRRAISDRYEIDRENLLSILSSYSSSGRHSVALDLLELLK-EHTPRSSQMITE 678

Query: 438 AMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDR 497
           A++ +      +D A++ +    ELG   +      LIQC  +     +  +VF      
Sbjct: 679 ALVVMLCKAQQLDTALKEYSNSRELGFTGSFTMFEALIQCCLENELFTEASQVFS----- 733

Query: 498 GVKPDDRLCG 507
               D R CG
Sbjct: 734 ----DMRFCG 739



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 76/389 (19%), Positives = 158/389 (40%), Gaps = 13/389 (3%)

Query: 225  YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
            +  +I C     LF EA + F  M   G+   E  Y +++ +Y K G  E    L +   
Sbjct: 712  FEALIQCCLENELFTEASQVFSDMRFCGIKASECLYQSMMLLYCKMGFPETAHHLIDLTE 771

Query: 285  ASGWKPDPIAFSV-LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
              G   + I+  V + + +G    +     V   M+   +  N  V+N L+EA   +G  
Sbjct: 772  TDGTVLNNISVYVDVIEAYGRLKLWQKAESVAGNMRQSCITVNRKVWNALIEAYAASGCY 831

Query: 344  GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
              AR++F+ M++ G +P   ++  L++        ++   + + +++  + +       +
Sbjct: 832  ERARAVFNTMMKDGPSPTVDSINGLLQALIVDGRLEELYVVVQELQDIGFKISKSSILLM 891

Query: 404  LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
            L+  A  G + E ++++  MK + Y  P  + Y  M  +   G  V +   +  EM E G
Sbjct: 892  LDAFARAGNIFEVKKIYHGMKAAGYF-PSMHLYRVMAQLLCRGKQVRDVEAMLSEMEEAG 950

Query: 464  VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVG 523
               ++     +++            +++    + G++PD+     L  +V  C       
Sbjct: 951  FKPDLSIWNSVLKMYVAIDDFRKTTQIYQRIKEDGLEPDEDTYNIL--IVMYCRDHRPKE 1008

Query: 524  KVITCLQQAN----PKLVAFLNLIEDNSTGFENI---KEEFRNVIKDTEVDARRPFCNCL 576
             ++   +       PKL  + +L+   S G + +    EE    ++ T     R F + +
Sbjct: 1009 GLVLMDEMRTVGLEPKLDTYKSLVA--SFGKQQLVEQAEELFEELQSTGCKLDRSFYHIM 1066

Query: 577  IDICRNRNLNERAHELLYLGTLYGLYPGL 605
            + I RN   + +A  L  +    G+ P +
Sbjct: 1067 MKIYRNSGSHSKAQRLFSMMKDEGVEPTI 1095


>gi|110741592|dbj|BAE98744.1| PPR-repeat protein [Arabidopsis thaliana]
          Length = 548

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/342 (24%), Positives = 167/342 (48%), Gaps = 3/342 (0%)

Query: 161 LNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIEL 220
           L  +K       F + +KS+  FP   + +N  + ++   +++ ++  L  +M    I  
Sbjct: 61  LRDIKLNDAIDLFSDMVKSRP-FP-SIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRN 118

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D  T++ +I C   C     A+    +M K G  PD VT  ++++ + +  +V + +SL 
Sbjct: 119 DLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLV 178

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
           ++ V  G+KPD +A++ +     ++   +      +E++  G++PN+V Y  L+  +  +
Sbjct: 179 DKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNS 238

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
            +   A  L  +M++  +TP+  T +AL+  + K     +A EL+E M       D + Y
Sbjct: 239 SRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTY 298

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           ++L+N       ++EA ++F D+ +S  C  D  SY  ++N +     V++ ++LF EMS
Sbjct: 299 SSLVNGLCLHDRIDEANQMF-DLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMS 357

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           + G+  N +    LIQ   +A  +D     F      G+ PD
Sbjct: 358 QRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPD 399



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 146/294 (49%), Gaps = 1/294 (0%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L ++MV    + D + Y+ II    +    ++A ++F+ + + G+ P+ VTY+A+++   
Sbjct: 177 LVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLC 236

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
            S +  +   L    +     P+ I +S L   F ++G     + + +EM  + + P++V
Sbjct: 237 NSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIV 296

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            Y++L+  +    +   A  +FD MV  G   D  +   LI  + KA+  +D ++L+  M
Sbjct: 297 TYSSLVNGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREM 356

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
            +     + + YNTL+      G V++A+  F  M       PD ++Y  +L      G 
Sbjct: 357 SQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGI-SPDIWTYNILLGGLCDNGE 415

Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           ++ A+ +FE+M +  + ++++  T +I+ + K  ++++   +F     +G+KPD
Sbjct: 416 LEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPD 469



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 157/326 (48%), Gaps = 5/326 (1%)

Query: 145 ITEIPHQPTRENALLILNSL---KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGR 201
           + EI ++P       I++SL   K    ++ FF  I+ + + P   + Y   +  L    
Sbjct: 181 MVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRP-NVVTYTALVNGLCNSS 239

Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS 261
           ++    +L ++M+  +I  + ITYS ++    +     EA E FE M +  + PD VTYS
Sbjct: 240 RWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYS 299

Query: 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
           ++++      +++E   +++  V+ G   D ++++ L   F ++   +    + +EM   
Sbjct: 300 SLVNGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQR 359

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
           G+  N V YNTL++   +AG    A+  F +M   G++PD  T   L+         + A
Sbjct: 360 GLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKA 419

Query: 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
           L ++E M++ +  +D + Y T++      G VEEA  LF  + L    KPD  +YT M++
Sbjct: 420 LVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGL-KPDIVTYTTMMS 478

Query: 442 IYGSGGNVDNAIELFEEMSELGVAIN 467
              + G +     L+ +M + G+  N
Sbjct: 479 GLCTKGLLHEVEALYTKMKQEGLMKN 504



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 123/259 (47%), Gaps = 9/259 (3%)

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
           ++L  EMV   I+ D +TYS+++      +  DEA + F+ M   G + D V+Y+ +++ 
Sbjct: 280 KELFEEMVRMSIDPDIVTYSSLVNGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLING 339

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
           + K+ +VE+ + L+      G   + + ++ L + F ++GD D  +    +M   G+ P+
Sbjct: 340 FCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPD 399

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
           +  YN LL  +   G+   A  +F++M +  +  D  T T +I+   K    ++A  L+ 
Sbjct: 400 IWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFC 459

Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
            +       D + Y T+++     GL+ E E L+  MK     K D            S 
Sbjct: 460 SLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKND---------CTLSD 510

Query: 447 GNVDNAIELFEEMSELGVA 465
           G++  + EL ++M   G A
Sbjct: 511 GDITLSAELIKKMLSCGYA 529


>gi|297743291|emb|CBI36158.3| unnamed protein product [Vitis vinifera]
          Length = 638

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 100/355 (28%), Positives = 163/355 (45%), Gaps = 6/355 (1%)

Query: 160 ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIE 219
           +L   K   K+   F  IK +   P    + ++ +  ++ G   + + +L NEM +    
Sbjct: 168 VLGKAKMVNKALSIFYQIKGRKCKPTSNTYNSMILMLMQEGHH-EKVHELYNEMCNEGDC 226

Query: 220 L-DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS 278
           L D +TYS +I    +    D AI  F+ M + GL P    Y+ IL +Y K G+VE+ L 
Sbjct: 227 LPDTVTYSALIAAFGKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALG 286

Query: 279 LYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMG 338
           L +     G       ++ L K  G++G  +    +   M   G +P++V+ N L+  +G
Sbjct: 287 LVQEMKEKGCALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLG 346

Query: 339 KAGKPGLARSLFDEMVESGLTPDEKTLTALIK--IYGKARWAKDALELWERMRENKWPMD 396
           KAG+   A  LF+EM     TP+  T   +IK     KAR A +A   +E+M+EN     
Sbjct: 347 KAGRLADAIKLFEEMESLQCTPNVVTYNTVIKALFESKAR-ASEAFLWYEKMKENGVVPS 405

Query: 397 FILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELF 456
              Y+ L++       VE+A  L E+M    +  P   +Y +++N  G     + A ELF
Sbjct: 406 SFTYSILIDGFCKTNRVEKALLLLEEMDEKGFA-PCPAAYCSLINALGKAKRYEAANELF 464

Query: 457 EEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
           +E+ E     +      +I+ LGK  R+ + V +F      G  PD      L+S
Sbjct: 465 QELRENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMS 519



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 83/267 (31%), Positives = 130/267 (48%), Gaps = 4/267 (1%)

Query: 219 ELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS 278
           E D+ TY  +I C     +  E  +  + M ++  +      S I+ V  K+  V + LS
Sbjct: 121 EHDSTTYMALIHCLDEAGMLGEMWKTIQEMVRSTCVIGPADLSEIVKVLGKAKMVNKALS 180

Query: 279 LYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG-VQPNLVVYNTLLEAM 337
           ++ +      KP    ++ +  M  + G ++ +  +  EM + G   P+ V Y+ L+ A 
Sbjct: 181 IFYQIKGRKCKPTSNTYNSMILMLMQEGHHEKVHELYNEMCNEGDCLPDTVTYSALIAAF 240

Query: 338 GKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDF 397
           GK G+   A SLFDEM E+GL P  K  T ++ IY K    + AL L + M+E    +  
Sbjct: 241 GKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKEKGCALTV 300

Query: 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE 457
             Y  L+      G VEEA  +F +M L + CKPD      ++N+ G  G + +AI+LFE
Sbjct: 301 YTYTELIKGVGKAGKVEEAYSIFMNM-LKEGCKPDVVLINNLINLLGKAGRLADAIKLFE 359

Query: 458 EMSELGVAINVMGCTCLIQCL--GKAR 482
           EM  L    NV+    +I+ L   KAR
Sbjct: 360 EMESLQCTPNVVTYNTVIKALFESKAR 386



 Score =  115 bits (288), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 141/296 (47%), Gaps = 16/296 (5%)

Query: 191 NVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFD------EAIEW 244
           N+  K+ R     +L E    EM S +   + +TY+T+I       LF+      EA  W
Sbjct: 343 NLLGKAGRLADAIKLFE----EMESLQCTPNVVTYNTVIKA-----LFESKARASEAFLW 393

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
           +E+M + G++P   TYS ++D + K+ +VE+ L L E     G+ P P A+  L    G+
Sbjct: 394 YEKMKENGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGK 453

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
           +  Y+    + QE++      +  VY  +++ +GK G+   A  LF+EM + G  PD   
Sbjct: 454 AKRYEAANELFQELRENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYA 513

Query: 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
             AL+    +     +A  L   M EN    D   +N +LN  A  G  + A  +F  MK
Sbjct: 514 YNALMSGMVRVGMTDEAHSLLRTMEENGCTPDLNSHNIILNGFARTGGPKGAIEMFTRMK 573

Query: 425 LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK 480
            S   KPD  SY  +L      G  + A +L +EM+  G   +++  + +++ +GK
Sbjct: 574 NSK-IKPDVVSYNTVLGCLSRAGMFEEAAKLMKEMNSKGFEYDLITYSSILEAVGK 628



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 87/389 (22%), Positives = 158/389 (40%), Gaps = 47/389 (12%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F+ +K   L P   I+  +     + GR  + +  L  EM      L   TY+ +I   
Sbjct: 252 LFDEMKENGLHPTAKIYTTILGIYFKLGRVEKAL-GLVQEMKEKGCALTVYTYTELIKGV 310

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL------------- 279
            +    +EA   F  M K G  PD V  + ++++  K+G++ + + L             
Sbjct: 311 GKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLFEEMESLQCTPNV 370

Query: 280 -----------------------YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQ 316
                                  YE+   +G  P    +S+L   F ++   +    +L+
Sbjct: 371 VTYNTVIKALFESKARASEAFLWYEKMKENGVVPSSFTYSILIDGFCKTNRVEKALLLLE 430

Query: 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
           EM   G  P    Y +L+ A+GKA +   A  LF E+ E+      +    +IK  GK  
Sbjct: 431 EMDEKGFAPCPAAYCSLINALGKAKRYEAANELFQELRENCGYSSARVYAVMIKHLGKCG 490

Query: 377 WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY 436
              +A++L+  M++     D   YN L++    +G+ +EA  L   M+  + C PD  S+
Sbjct: 491 RLSEAVDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTME-ENGCTPDLNSH 549

Query: 437 TAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496
             +LN +   G    AIE+F  M    +  +V+    ++ CL +A   ++  ++      
Sbjct: 550 NIILNGFARTGGPKGAIEMFTRMKNSKIKPDVVSYNTVLGCLSRAGMFEEAAKLMKEMNS 609

Query: 497 RGVKPDDRLCGCLLSVVSLCETSEDVGKV 525
           +G + D         +++     E VGK+
Sbjct: 610 KGFEYD---------LITYSSILEAVGKI 629



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 124/292 (42%), Gaps = 39/292 (13%)

Query: 256 DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVL 315
           D  TY A++    ++G + E+    +  V S     P   S + K+ G++   +    + 
Sbjct: 123 DSTTYMALIHCLDEAGMLGEMWKTIQEMVRSTCVIGPADLSEIVKVLGKAKMVNKALSIF 182

Query: 316 QEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG-LTPDEKTLTALIKIYGK 374
            ++K    +P    YN+++  + + G       L++EM   G   PD  T +ALI  +GK
Sbjct: 183 YQIKGRKCKPTSNTYNSMILMLMQEGHHEKVHELYNEMCNEGDCLPDTVTYSALIAAFGK 242

Query: 375 ARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNY 434
                                              +G  + A  LF++MK  +   P   
Sbjct: 243 -----------------------------------LGRDDSAISLFDEMK-ENGLHPTAK 266

Query: 435 SYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVS 494
            YT +L IY   G V+ A+ L +EM E G A+ V   T LI+ +GKA ++++   +F   
Sbjct: 267 IYTTILGIYFKLGRVEKALGLVQEMKEKGCALTVYTYTELIKGVGKAGKVEEAYSIFMNM 326

Query: 495 IDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQ--QANPKLVAFLNLIE 544
           +  G KPD  L   L++++       D  K+   ++  Q  P +V +  +I+
Sbjct: 327 LKEGCKPDVVLINNLINLLGKAGRLADAIKLFEEMESLQCTPNVVTYNTVIK 378


>gi|410110095|gb|AFV61127.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           montevidensis]
          Length = 418

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/268 (31%), Positives = 140/268 (52%), Gaps = 1/268 (0%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           TYST+IT   +  LFD A+ W ++M +  +  D V YS ++++  K     + +S++ R 
Sbjct: 1   TYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 60

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
             SG+ PD +A++ +  +FG++  +   R ++ EMK+ GV PN   Y+TLL    +  K 
Sbjct: 61  KRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTTSYSTLLTMYVENKKF 120

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
             A S+F EM E     D  T   +I +YG+   AK+A +L+  MR+     + + YNTL
Sbjct: 121 LEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTL 180

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           L +  D  L  EA  LF  M+  +  + +  +Y +M+ IYG     + A  L +EM   G
Sbjct: 181 LRVYGDAELFGEAIHLFRLMQRKN-IEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRG 239

Query: 464 VAINVMGCTCLIQCLGKARRIDDLVRVF 491
           +  N +  + +I   GK  ++D    +F
Sbjct: 240 IEPNSITYSTIISIWGKVGKLDRAAMLF 267



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 83/367 (22%), Positives = 170/367 (46%), Gaps = 6/367 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K     P + + YN  +      + F+    L  EM +  +  +  +YS
Sbjct: 50  YSKAISIFSRLKRSGFTP-DLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTTSYS 108

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY + G  +E   L+      
Sbjct: 109 TLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 168

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   ++ N+V YN+++   GK  +   A
Sbjct: 169 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKA 228

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R +   +D IL+ T++  
Sbjct: 229 NNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGXEIDQILFQTMIVA 288

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K     +PDN      ++I    G ++ A  +F +  + G   
Sbjct: 289 YERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVK 343

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           ++     +I  L K ++  ++V VF      G  PD  +   +L+     +  +    V 
Sbjct: 344 DITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVY 403

Query: 527 TCLQQAN 533
             +Q+  
Sbjct: 404 MEMQEVG 410



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 138/271 (50%), Gaps = 1/271 (0%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
            +M  + +  D + YS +I  +++   + +AI  F R+ ++G  PD V Y+A+++V+ K+
Sbjct: 23  QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKA 82

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
               E  SL     A+G  P+  ++S L  M+ E+  +     V  EM+ +    +L   
Sbjct: 83  KLFREARSLIGEMKAAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTC 142

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
           N +++  G+ G    A  LF  M + G+ P+  +   L+++YG A    +A+ L+  M+ 
Sbjct: 143 NIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR 202

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
                + + YN+++ +       E+A  L ++M+ S   +P++ +Y+ +++I+G  G +D
Sbjct: 203 KNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ-SRGIEPNSITYSTIISIWGKVGKLD 261

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
            A  LF+++   G  I+ +    +I    +A
Sbjct: 262 RAAMLFQKLRSSGXEIDQILFQTMIVAYERA 292



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 90/204 (44%), Gaps = 1/204 (0%)

Query: 330 YNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMR 389
           Y+TL+   GK G    A S   +M +  +  D    + LI++  K      A+ ++ R++
Sbjct: 2   YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLK 61

Query: 390 ENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNV 449
            + +  D + YN ++N+     L  EA  L  +MK +    P+  SY+ +L +Y      
Sbjct: 62  RSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAG-VMPNTTSYSTLLTMYVENKKF 120

Query: 450 DNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCL 509
             A+ +F EM E+   +++  C  +I   G+     +  ++F      G++P+      L
Sbjct: 121 LEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTL 180

Query: 510 LSVVSLCETSEDVGKVITCLQQAN 533
           L V    E   +   +   +Q+ N
Sbjct: 181 LRVYGDAELFGEAIHLFRLMQRKN 204


>gi|356528166|ref|XP_003532676.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Glycine max]
          Length = 852

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 161/332 (48%), Gaps = 6/332 (1%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLA--NEMVSNEIELDNITYSTIIT 230
            F  +K++ L P + + YN  +    +G+   L   ++   EM     E D ITY+++I 
Sbjct: 273 LFEEMKAKGLRP-DIVTYNSLIDG--YGKVGMLTGAVSVFEEMKDAGCEPDVITYNSLIN 329

Query: 231 CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
           C  +     +A E+   M + GL P+ VTYS ++D + K+G + E    +   +  G +P
Sbjct: 330 CFCKFERIPQAFEYLHGMKQRGLQPNVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQP 389

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
           +   ++ L     + GD +    +  EM+  GV  N+V Y  LL+ + + G+   A  LF
Sbjct: 390 NEFTYTSLIDANCKIGDLNEAFKLESEMQQAGVNLNIVTYTALLDGLCEDGRMREAEELF 449

Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
             ++++G T +++  T+L   Y KA+  + A+++ E M +     D +LY T +      
Sbjct: 450 GALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKKNLKPDLLLYGTKIWGLCRQ 509

Query: 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG 470
             +E++  +  +M +      ++Y YT +++ Y   G    A+ L +EM +LG+ I V+ 
Sbjct: 510 NEIEDSMAVIREM-MDCGLTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKITVVT 568

Query: 471 CTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
              LI  L K   +   VR F      G++P+
Sbjct: 569 YGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPN 600



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 142/275 (51%), Gaps = 1/275 (0%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
            + T+        + +EA + F +M K  ++P   + + +L   +KS K    LS ++  
Sbjct: 183 VFDTLFNVLVDLGMLEEARQCFWKMNKFRVLPKVRSCNELLHRLSKSSKGGLALSFFKDM 242

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
           V +G  P    ++++       GD +  R + +EMK+ G++P++V YN+L++  GK G  
Sbjct: 243 VVAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLIDGYGKVGML 302

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
             A S+F+EM ++G  PD  T  +LI  + K      A E    M++     + + Y+TL
Sbjct: 303 TGAVSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQPNVVTYSTL 362

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           ++     G++ EA + F DM +    +P+ ++YT++++     G+++ A +L  EM + G
Sbjct: 363 IDAFCKAGMLLEANKFFVDM-IRVGLQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQAG 421

Query: 464 VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRG 498
           V +N++  T L+  L +  R+ +   +FG  +  G
Sbjct: 422 VNLNIVTYTALLDGLCEDGRMREAEELFGALLKAG 456



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 90/326 (27%), Positives = 157/326 (48%), Gaps = 11/326 (3%)

Query: 212 EMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG 271
           +MV   +     TY+ +I C  R    + A   FE M   GL PD VTY++++D Y K G
Sbjct: 241 DMVVAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLIDGYGKVG 300

Query: 272 KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYN 331
            +   +S++E    +G +PD I ++ L   F +          L  MK  G+QPN+V Y+
Sbjct: 301 MLTGAVSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQPNVVTYS 360

Query: 332 TLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN 391
           TL++A  KAG    A   F +M+  GL P+E T T+LI    K     +A +L   M++ 
Sbjct: 361 TLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQA 420

Query: 392 KWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDN 451
              ++ + Y  LL+   + G + EAE LF  +  + +   +   YT++ + Y     ++ 
Sbjct: 421 GVNLNIVTYTALLDGLCEDGRMREAEELFGALLKAGW-TLNQQIYTSLFHGYIKAKMMEK 479

Query: 452 AIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
           A+++ EEM++  +  +++     I  L +   I+D + V    +D G+  +  +   L+ 
Sbjct: 480 AMDILEEMNKKNLKPDLLLYGTKIWGLCRQNEIEDSMAVIREMMDCGLTANSYIYTTLID 539

Query: 512 ----------VVSLCETSEDVGKVIT 527
                      V+L +  +D+G  IT
Sbjct: 540 AYFKVGKTTEAVNLLQEMQDLGIKIT 565



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 140/305 (45%), Gaps = 5/305 (1%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           +L +EM    + L+ +TY+ ++          EA E F  + K G   ++  Y+++   Y
Sbjct: 412 KLESEMQQAGVNLNIVTYTALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGY 471

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG--ESGDYDGIRYVLQEMKSLGVQP 325
            K+  +E+ + + E       KPD + +    K++G     + +    V++EM   G+  
Sbjct: 472 IKAKMMEKAMDILEEMNKKNLKPDLLLYGT--KIWGLCRQNEIEDSMAVIREMMDCGLTA 529

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
           N  +Y TL++A  K GK   A +L  EM + G+     T   LI    K    + A+  +
Sbjct: 530 NSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQAVRYF 589

Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445
           + M  N    + ++Y  L++       +EEA+ LF +M L     PD   YT++++    
Sbjct: 590 DHMTRNGLQPNIMIYTALIDGLCKNDCLEEAKNLFNEM-LDKGISPDKLVYTSLIDGNMK 648

Query: 446 GGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRL 505
            GN   A+ L   M E+G+ +++   T LI    +  ++     +    + +G+ PD  L
Sbjct: 649 HGNPGEALSLRNRMVEIGMELDLCAYTSLIWGFSRYGQVQLAKSLLDEMLRKGIIPDQVL 708

Query: 506 CGCLL 510
           C CLL
Sbjct: 709 CICLL 713



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 127/264 (48%), Gaps = 11/264 (4%)

Query: 165 KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLA--NEMVSNEIELDN 222
           K  +K+      +  +NL P + + Y   +  L   RQ ++ + +A   EM+   +  ++
Sbjct: 475 KMMEKAMDILEEMNKKNLKP-DLLLYGTKIWGL--CRQNEIEDSMAVIREMMDCGLTANS 531

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
             Y+T+I    +     EA+   + M   G+    VTY  ++D   K G V++ +  ++ 
Sbjct: 532 YIYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQAVRYFDH 591

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
              +G +P+ + ++ L     ++   +  + +  EM   G+ P+ +VY +L++   K G 
Sbjct: 592 MTRNGLQPNIMIYTALIDGLCKNDCLEEAKNLFNEMLDKGISPDKLVYTSLIDGNMKHGN 651

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALI---KIYGKARWAKDALELWERMRENKWPMDFIL 399
           PG A SL + MVE G+  D    T+LI     YG+ + AK  L+  E +R+   P D +L
Sbjct: 652 PGEALSLRNRMVEIGMELDLCAYTSLIWGFSRYGQVQLAKSLLD--EMLRKGIIP-DQVL 708

Query: 400 YNTLLNMCADIGLVEEAERLFEDM 423
              LL    ++G + EA  L +DM
Sbjct: 709 CICLLRKYYELGDINEALALHDDM 732



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/274 (23%), Positives = 123/274 (44%), Gaps = 9/274 (3%)

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
           E+L   ++     L+   Y+++     +  + ++A++  E M K  L PD + Y   +  
Sbjct: 446 EELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKKNLKPDLLLYGTKIWG 505

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
             +  ++E+ +++    +  G   +   ++ L   + + G       +LQEM+ LG++  
Sbjct: 506 LCRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKIT 565

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
           +V Y  L++ + K G    A   FD M  +GL P+    TALI    K    ++A  L+ 
Sbjct: 566 VVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTALIDGLCKNDCLEEAKNLFN 625

Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEA----ERLFEDMKLSDYCKPDNYSYTAMLNI 442
            M +     D ++Y +L++     G   EA     R+ E     D C     +YT+++  
Sbjct: 626 EMLDKGISPDKLVYTSLIDGNMKHGNPGEALSLRNRMVEIGMELDLC-----AYTSLIWG 680

Query: 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
           +   G V  A  L +EM   G+  + + C CL++
Sbjct: 681 FSRYGQVQLAKSLLDEMLRKGIIPDQVLCICLLR 714



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 77/168 (45%), Gaps = 6/168 (3%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
           + M  N ++ + + Y+ +I    + +  +EA   F  M   G+ PD++ Y++++D   K 
Sbjct: 590 DHMTRNGLQPNIMIYTALIDGLCKNDCLEEAKNLFNEMLDKGISPDKLVYTSLIDGNMKH 649

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
           G   E LSL  R V  G + D  A++ L   F   G     + +L EM   G+ P+ V+ 
Sbjct: 650 GNPGEALSLRNRMVEIGMELDLCAYTSLIWGFSRYGQVQLAKSLLDEMLRKGIIPDQVLC 709

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDE------KTLTALIKIY 372
             LL    + G    A +L D+M   GL            LTA+ K++
Sbjct: 710 ICLLRKYYELGDINEALALHDDMARRGLISGTIDITVPSCLTAVTKLH 757



 Score = 42.7 bits (99), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 34/140 (24%)

Query: 397 FILYNTLLNMCADIGLVEEAERLFEDM-----------------KLSDYCK--------- 430
           F +++TL N+  D+G++EEA + F  M                 +LS   K         
Sbjct: 181 FGVFDTLFNVLVDLGMLEEARQCFWKMNKFRVLPKVRSCNELLHRLSKSSKGGLALSFFK 240

Query: 431 --------PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKAR 482
                   P  ++Y  ++      G+++ A  LFEEM   G+  +++    LI   GK  
Sbjct: 241 DMVVAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLIDGYGKVG 300

Query: 483 RIDDLVRVFGVSIDRGVKPD 502
            +   V VF    D G +PD
Sbjct: 301 MLTGAVSVFEEMKDAGCEPD 320


>gi|147858101|emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera]
          Length = 962

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 157/338 (46%), Gaps = 2/338 (0%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            ++ +  + L P  T+ YN  +  L  G +F    ++ + M  +    +  TY+ II   
Sbjct: 402 LYHKMLKEGLVP-NTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGL 460

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
                 ++A+  FE+M K G +P  VTY+ +++ Y   G V     L +    +G +PD 
Sbjct: 461 CLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDE 520

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
             ++ L   F + G  +   +  QEM   G+ PN V Y TL++   K GK  +A SL + 
Sbjct: 521 WTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTTLIDGHSKDGKVDIALSLLER 580

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M E G  P+ ++  A+I    K     +A ++ ++M E     + I Y TL++     G 
Sbjct: 581 MEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGR 640

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
            + A ++F DM+    C P+ Y+Y++++      G  D A  L +EM   G+A + +  T
Sbjct: 641 TQFAFKIFHDME-KRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFT 699

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
            LI       RID    +    +D G KP+ R    LL
Sbjct: 700 SLIDGFVVLGRIDHAFLLLRRMVDVGCKPNYRTYSVLL 737



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 139/303 (45%), Gaps = 2/303 (0%)

Query: 200 GRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVT 259
           GR  + ++ L  EM+   IE    TY+  IT        +EAIE   RM K G  P+  T
Sbjct: 324 GRVDEALDML-EEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQT 382

Query: 260 YSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMK 319
           Y+A++   ++ GK+E  + LY + +  G  P+ + ++ L       G +     +   M+
Sbjct: 383 YTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWME 442

Query: 320 SLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAK 379
             G   N   YN +++ +   G    A  LF++M++ G  P   T   LI  Y       
Sbjct: 443 GHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVN 502

Query: 380 DALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAM 439
           +A  L + M+EN    D   YN L++  +  G +E A   F++M +     P+  SYT +
Sbjct: 503 NAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEM-VECGLNPNPVSYTTL 561

Query: 440 LNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGV 499
           ++ +   G VD A+ L E M E+G   NV     +I  L K  R  +  ++     ++G+
Sbjct: 562 IDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMAEQGL 621

Query: 500 KPD 502
            P+
Sbjct: 622 LPN 624



 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 77/302 (25%), Positives = 134/302 (44%), Gaps = 1/302 (0%)

Query: 201 RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTY 260
           R   L   + + MV    + +++TYST+I         DEA++  E M + G+ P   TY
Sbjct: 289 RNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTY 348

Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
           +  +         EE + L  R    G +P+   ++ L       G  +    +  +M  
Sbjct: 349 TLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLK 408

Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380
            G+ PN V YN L+  +   G+   A  +F  M   G   + +T   +IK        + 
Sbjct: 409 EGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEK 468

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
           A+ L+E+M +       + YNTL+N     G V  A RL + MK  + C+PD ++Y  ++
Sbjct: 469 AMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMK-ENGCEPDEWTYNELV 527

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
           + +   G +++A   F+EM E G+  N +  T LI    K  ++D  + +     + G  
Sbjct: 528 SGFSKWGKLESASFYFQEMVECGLNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCN 587

Query: 501 PD 502
           P+
Sbjct: 588 PN 589



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 71/304 (23%), Positives = 137/304 (45%), Gaps = 25/304 (8%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           +Y+ +I    + N F EA +  ++M + GL+P+ +TY+ ++D   ++G+ +    ++   
Sbjct: 592 SYNAVINGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDM 651

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
                 P+   +S L     + G  D    +L+EM+  G+ P+ V + +L++     G+ 
Sbjct: 652 EKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRI 711

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIK-------------------IYGKARWAKD---- 380
             A  L   MV+ G  P+ +T + L+K                   +Y  +   KD    
Sbjct: 712 DHAFLLLRRMVDVGCKPNYRTYSVLLKGLQKECLLLEEKVAVQHEAVYSFSPHEKDVNFE 771

Query: 381 -ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAM 439
               L  RM E         Y+TL++     G   EAE+L +DMK   +C PD   Y ++
Sbjct: 772 IVSNLLARMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFC-PDREIYYSL 830

Query: 440 LNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGV 499
           L  +     VD+A+++F  +   G  +++     LI  L KA ++++   +F   +++  
Sbjct: 831 LIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKEW 890

Query: 500 KPDD 503
             D+
Sbjct: 891 NADE 894



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 79/353 (22%), Positives = 162/353 (45%), Gaps = 10/353 (2%)

Query: 202 QFQLIE---QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEV 258
           +F+++E    L  +M+++ I+   +T++T+I    +     EA     ++++  L PD  
Sbjct: 217 KFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVF 276

Query: 259 TYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEM 318
           TY++++  + ++  ++    +++R V  G  P+ + +S L       G  D    +L+EM
Sbjct: 277 TYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEM 336

Query: 319 KSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWA 378
              G++P +  Y   + A+        A  L   M + G  P+ +T TALI    +    
Sbjct: 337 IEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKL 396

Query: 379 KDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTA 438
           + A+ L+ +M +     + + YN L+N     G    A ++F  M+       +  +Y  
Sbjct: 397 EVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWME-GHGSLANTQTYNE 455

Query: 439 MLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRG 498
           ++     GG+++ A+ LFE+M ++G    V+    LI        +++  R+  +  + G
Sbjct: 456 IIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENG 515

Query: 499 VKPDDRLCGCLLSVVS----LCETSEDVGKVITCLQQANPKLVAFLNLIEDNS 547
            +PD+     L+S  S    L   S    +++ C    NP  V++  LI+ +S
Sbjct: 516 CEPDEWTYNELVSGFSKWGKLESASFYFQEMVEC--GLNPNPVSYTTLIDGHS 566



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 66/290 (22%), Positives = 129/290 (44%), Gaps = 3/290 (1%)

Query: 192 VTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKT 251
           + +K+ R   + + +    NE+          + +T++    +  + + A   +++M  +
Sbjct: 175 LMIKACRNEEEIRRVADFLNEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNS 234

Query: 252 GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGI 311
           G+ P  +T++ ++++ +K GKV E   +  +       PD   ++ L      + + D  
Sbjct: 235 GIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLA 294

Query: 312 RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371
             V   M   G  PN V Y+TL+  +   G+   A  + +EM+E G+ P   T T  I  
Sbjct: 295 FGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITA 354

Query: 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
                  ++A+EL  RM++     +   Y  L++  + +G +E A  L+  M L +   P
Sbjct: 355 LCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKM-LKEGLVP 413

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ--CLG 479
           +  +Y A++N    GG    A+++F  M   G   N      +I+  CLG
Sbjct: 414 NTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLG 463



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 82/347 (23%), Positives = 142/347 (40%), Gaps = 79/347 (22%)

Query: 180 QNLFPMETIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLF 238
           Q L P   I Y   +  L R GR  Q   ++ ++M   +   +  TYS++I    +    
Sbjct: 619 QGLLP-NVITYTTLIDGLCRNGRT-QFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKA 676

Query: 239 DEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
           DEA    + M + GL PDEVT+++++D +   G+++    L  R V  G KP+   +SVL
Sbjct: 677 DEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDVGCKPNYRTYSVL 736

Query: 299 GKMFGESG------------------------DYDGIRYVLQEMKSLGVQPNLVVYNTLL 334
            K   +                          +++ +  +L  M  +G +P L  Y+TL+
Sbjct: 737 LKGLQKECLLLEEKVAVQHEAVYSFSPHEKDVNFEIVSNLLARMSEIGCEPTLDTYSTLV 796

Query: 335 EAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI-------------KIYG-------- 373
             + + G+   A  L  +M E G  PD +   +L+             KI+         
Sbjct: 797 SGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQ 856

Query: 374 --------------KARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
                         KA   ++A  L++ M E +W  D I++  L++     GL++E E L
Sbjct: 857 LHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLVD-----GLLKEGE-L 910

Query: 420 FEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
              MKL    +  N++            N+   + L  E+S +G +I
Sbjct: 911 DLCMKLLHIMESKNFT-----------PNIQTYVILGRELSRIGKSI 946



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 96/201 (47%), Gaps = 3/201 (1%)

Query: 315 LQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK 374
           L E+  +G   +L   NTLL  + K      AR+L+ +M+ SG+ P   T   LI I  K
Sbjct: 193 LNEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSK 252

Query: 375 ARWAKDALELWERMRENKWPMDFILYNTL-LNMCADIGLVEEAERLFEDMKLSDYCKPDN 433
               ++A  +  ++ +     D   Y +L L  C +  L + A  +F+ M + + C P++
Sbjct: 253 KGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNL-DLAFGVFDRM-VKEGCDPNS 310

Query: 434 YSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGV 493
            +Y+ ++N   + G VD A+++ EEM E G+   V   T  I  L      ++ + +   
Sbjct: 311 VTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVAR 370

Query: 494 SIDRGVKPDDRLCGCLLSVVS 514
              RG +P+ +    L+S +S
Sbjct: 371 MKKRGCRPNVQTYTALISGLS 391



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 71/157 (45%), Gaps = 3/157 (1%)

Query: 198 RFGRQFQLIEQLANEMVSNEIELD-NITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPD 256
           R GR ++  EQL  +M       D  I YS +I   K   + D A++ F  +   G    
Sbjct: 801 RKGRFYE-AEQLVKDMKERGFCPDREIYYSLLIAHCKNLEV-DHALKIFHSIEAKGFQLH 858

Query: 257 EVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQ 316
              Y A++    K+G+VEE  +L++  +   W  D I ++VL     + G+ D    +L 
Sbjct: 859 LSIYRALICALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLVDGLLKEGELDLCMKLLH 918

Query: 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
            M+S    PN+  Y  L   + + GK   +  L D++
Sbjct: 919 IMESKNFTPNIQTYVILGRELSRIGKSIESEPLADKL 955


>gi|225442663|ref|XP_002279821.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Vitis vinifera]
          Length = 725

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 100/355 (28%), Positives = 163/355 (45%), Gaps = 6/355 (1%)

Query: 160 ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIE 219
           +L   K   K+   F  IK +   P    + ++ +  ++ G   + + +L NEM +    
Sbjct: 168 VLGKAKMVNKALSIFYQIKGRKCKPTSNTYNSMILMLMQEGHH-EKVHELYNEMCNEGDC 226

Query: 220 L-DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS 278
           L D +TYS +I    +    D AI  F+ M + GL P    Y+ IL +Y K G+VE+ L 
Sbjct: 227 LPDTVTYSALIAAFGKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALG 286

Query: 279 LYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMG 338
           L +     G       ++ L K  G++G  +    +   M   G +P++V+ N L+  +G
Sbjct: 287 LVQEMKEKGCALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLG 346

Query: 339 KAGKPGLARSLFDEMVESGLTPDEKTLTALIK--IYGKARWAKDALELWERMRENKWPMD 396
           KAG+   A  LF+EM     TP+  T   +IK     KAR A +A   +E+M+EN     
Sbjct: 347 KAGRLADAIKLFEEMESLQCTPNVVTYNTVIKALFESKAR-ASEAFLWYEKMKENGVVPS 405

Query: 397 FILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELF 456
              Y+ L++       VE+A  L E+M    +  P   +Y +++N  G     + A ELF
Sbjct: 406 SFTYSILIDGFCKTNRVEKALLLLEEMDEKGFA-PCPAAYCSLINALGKAKRYEAANELF 464

Query: 457 EEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
           +E+ E     +      +I+ LGK  R+ + V +F      G  PD      L+S
Sbjct: 465 QELRENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMS 519



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 83/267 (31%), Positives = 130/267 (48%), Gaps = 4/267 (1%)

Query: 219 ELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS 278
           E D+ TY  +I C     +  E  +  + M ++  +      S I+ V  K+  V + LS
Sbjct: 121 EHDSTTYMALIHCLDEAGMLGEMWKTIQEMVRSTCVIGPADLSEIVKVLGKAKMVNKALS 180

Query: 279 LYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG-VQPNLVVYNTLLEAM 337
           ++ +      KP    ++ +  M  + G ++ +  +  EM + G   P+ V Y+ L+ A 
Sbjct: 181 IFYQIKGRKCKPTSNTYNSMILMLMQEGHHEKVHELYNEMCNEGDCLPDTVTYSALIAAF 240

Query: 338 GKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDF 397
           GK G+   A SLFDEM E+GL P  K  T ++ IY K    + AL L + M+E    +  
Sbjct: 241 GKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKEKGCALTV 300

Query: 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE 457
             Y  L+      G VEEA  +F +M L + CKPD      ++N+ G  G + +AI+LFE
Sbjct: 301 YTYTELIKGVGKAGKVEEAYSIFMNM-LKEGCKPDVVLINNLINLLGKAGRLADAIKLFE 359

Query: 458 EMSELGVAINVMGCTCLIQCL--GKAR 482
           EM  L    NV+    +I+ L   KAR
Sbjct: 360 EMESLQCTPNVVTYNTVIKALFESKAR 386



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 102/378 (26%), Positives = 171/378 (45%), Gaps = 39/378 (10%)

Query: 191 NVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFD------EAIEW 244
           N+  K+ R     +L E    EM S +   + +TY+T+I       LF+      EA  W
Sbjct: 343 NLLGKAGRLADAIKLFE----EMESLQCTPNVVTYNTVIKA-----LFESKARASEAFLW 393

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
           +E+M + G++P   TYS ++D + K+ +VE+ L L E     G+ P P A+  L    G+
Sbjct: 394 YEKMKENGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGK 453

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
           +  Y+    + QE++      +  VY  +++ +GK G+   A  LF+EM + G  PD   
Sbjct: 454 AKRYEAANELFQELRENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYA 513

Query: 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
             AL+    +     +A  L   M EN    D   +N +LN  A  G  + A  +F  MK
Sbjct: 514 YNALMSGMVRVGMTDEAHSLLRTMEENGCTPDLNSHNIILNGFARTGGPKGAIEMFTRMK 573

Query: 425 LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKAR-- 482
            S   KPD  SY  +L      G  + A +L +EM+  G   +++  + +++ +GK    
Sbjct: 574 NSKI-KPDVVSYNTVLGCLSRAGMFEEAAKLMKEMNSKGFEYDLITYSSILEAVGKIDED 632

Query: 483 --------------RIDDLVRVFG-VSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVIT 527
                         +I +LVR  G VS +  ++  D  C C +  + L E      + I 
Sbjct: 633 HTPAGQTVMHIVNIKIINLVRREGHVSSEYLLRSTDPECQCCVDGLYLIE------QAIR 686

Query: 528 CLQQANPKLVAFLNLIED 545
            +++    L + L + ED
Sbjct: 687 AVERKPEALYSLLEMAED 704



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 124/292 (42%), Gaps = 39/292 (13%)

Query: 256 DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVL 315
           D  TY A++    ++G + E+    +  V S     P   S + K+ G++   +    + 
Sbjct: 123 DSTTYMALIHCLDEAGMLGEMWKTIQEMVRSTCVIGPADLSEIVKVLGKAKMVNKALSIF 182

Query: 316 QEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG-LTPDEKTLTALIKIYGK 374
            ++K    +P    YN+++  + + G       L++EM   G   PD  T +ALI  +GK
Sbjct: 183 YQIKGRKCKPTSNTYNSMILMLMQEGHHEKVHELYNEMCNEGDCLPDTVTYSALIAAFGK 242

Query: 375 ARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNY 434
                                              +G  + A  LF++MK  +   P   
Sbjct: 243 -----------------------------------LGRDDSAISLFDEMK-ENGLHPTAK 266

Query: 435 SYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVS 494
            YT +L IY   G V+ A+ L +EM E G A+ V   T LI+ +GKA ++++   +F   
Sbjct: 267 IYTTILGIYFKLGRVEKALGLVQEMKEKGCALTVYTYTELIKGVGKAGKVEEAYSIFMNM 326

Query: 495 IDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQ--QANPKLVAFLNLIE 544
           +  G KPD  L   L++++       D  K+   ++  Q  P +V +  +I+
Sbjct: 327 LKEGCKPDVVLINNLINLLGKAGRLADAIKLFEEMESLQCTPNVVTYNTVIK 378


>gi|449457361|ref|XP_004146417.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g23020-like [Cucumis sativus]
          Length = 858

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 149/310 (48%), Gaps = 13/310 (4%)

Query: 159 LILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEI 218
           +IL     W+++   F W      + +  I YN+ + +L   ++++L+E L  EM    I
Sbjct: 158 IILKEQTSWERALEIFEWFNMAGCYEVNVIHYNIVLGTLGKAQKWRLVESLWVEMNKKGI 217

Query: 219 ELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS 278
           +  N TY T+I    +    +EA+ W ERM + G+ PDEVT   ++ +Y K+G+ ++  S
Sbjct: 218 KPINSTYGTLIDVYSKGGFKEEALVWLERMNEQGMEPDEVTMGIVVQLYKKAGEFQKAES 277

Query: 279 LYERGVASGWKP-DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
            +++     W   + + + +  K    S        V   +    V  +   YNTL++  
Sbjct: 278 FFKK-----WSSCNSMKYEITNKKKAASVK------VESSLHPPHVSLSTYTYNTLIDTY 326

Query: 338 GKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDF 397
           GKAG+   A + F+ M++ G++P   T   +I I G     K+   L ++M E + P D 
Sbjct: 327 GKAGQLKEASTTFENMLKEGVSPTTVTFNTMIHICGNHGQLKEVTFLMQKMEELQCPPDT 386

Query: 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE 457
             YN L+++ A    ++ A   F +M+ +   +PD  SY  +L  Y     V  A +L  
Sbjct: 387 RTYNILISLYAKHDNIDLASNYFAEMEEAG-LQPDIVSYRTLLYAYSIRHMVAEAEKLIT 445

Query: 458 EMSELGVAIN 467
           EM E G+ I+
Sbjct: 446 EMDERGLEID 455



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 87/370 (23%), Positives = 169/370 (45%), Gaps = 43/370 (11%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           +NV +K+    + +   +++ + M SN +  D  +YS++I      ++   A+ + ++M 
Sbjct: 527 FNVMIKAYGVVKDYAKAQKIFDSMKSNGVVPDKCSYSSLIQILTGADMPAMALAYLKKMQ 586

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY- 308
             GL+ D + YS ++  ++K G +E    LY   V  G +PD I + VL   F ++G   
Sbjct: 587 SAGLVSDCIPYSVVISSFSKLGHLEMADKLYREMVKHGVQPDIIVYGVLINAFADAGSVK 646

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
           + I YV   MK  G+  N V+YN+                                   L
Sbjct: 647 EAINYV-NAMKRDGLSGNTVIYNS-----------------------------------L 670

Query: 369 IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428
           IK+Y K  + K+A E ++ + +          N ++++ ++  +V+EAE +FE +K    
Sbjct: 671 IKLYTKVGYLKEAHEAYKMLEQTDDGPAIYSSNCMIDLYSERSMVKEAEEIFESLKKKG- 729

Query: 429 CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLV 488
            + + +++  ML +Y   G +  AI +  +M E G+  +++    +I       R  + V
Sbjct: 730 -EANEFTFAMMLCMYKKIGRIQEAICVARQMKEQGLLSDLLSFNNMISLYAMDGRFKEAV 788

Query: 489 RVFGVSIDRGVKPDDRLCGCLLSVVSLCETSED-VGKV-ITCLQQANPKLVAFLNLIEDN 546
            +F   +   V+PD+     L  V+  C  S+  V K+ +T  + A   L A+++++  +
Sbjct: 789 SIFQEMMKAAVQPDECTYKSLGVVLLKCGVSKQAVSKLEVTAKKDAQSGLQAWVSVL--S 846

Query: 547 STGFENIKEE 556
           S    N+ EE
Sbjct: 847 SVVGMNVNEE 856



 Score = 99.0 bits (245), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 95/419 (22%), Positives = 174/419 (41%), Gaps = 49/419 (11%)

Query: 217 EIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV 276
            + L   TY+T+I    +     EA   FE M K G+ P  VT++ ++ +    G+++EV
Sbjct: 311 HVSLSTYTYNTLIDTYGKAGQLKEASTTFENMLKEGVSPTTVTFNTMIHICGNHGQLKEV 370

Query: 277 LSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA 336
             L ++       PD   +++L  ++ +  + D       EM+  G+QP++V Y TLL A
Sbjct: 371 TFLMQKMEELQCPPDTRTYNILISLYAKHDNIDLASNYFAEMEEAGLQPDIVSYRTLLYA 430

Query: 337 MGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMD 396
                    A  L  EM E GL  DE T +AL ++Y  A   +++   + R       M 
Sbjct: 431 YSIRHMVAEAEKLITEMDERGLEIDEFTQSALTRMYIDAGMLEESWSWFWRFHLAG-HMS 489

Query: 397 FILYNTLLNMCADIGLVEEAERLF----EDMK---------------LSDYCK------- 430
              Y+  ++   + G + EAER+F    E+ K               + DY K       
Sbjct: 490 SECYSANIDAYGERGFILEAERVFVSCQEEKKCTVLEFNVMIKAYGVVKDYAKAQKIFDS 549

Query: 431 -------PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483
                  PD  SY++++ I         A+   ++M   G+  + +  + +I    K   
Sbjct: 550 MKSNGVVPDKCSYSSLIQILTGADMPAMALAYLKKMQSAGLVSDCIPYSVVISSFSKLGH 609

Query: 484 IDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANP--------K 535
           ++   +++   +  GV+PD  + G L++  +      D G V   +   N          
Sbjct: 610 LEMADKLYREMVKHGVQPDIIVYGVLINAFA------DAGSVKEAINYVNAMKRDGLSGN 663

Query: 536 LVAFLNLIE-DNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELL 593
            V + +LI+     G+     E   +++ T+        NC+ID+   R++ + A E+ 
Sbjct: 664 TVIYNSLIKLYTKVGYLKEAHEAYKMLEQTDDGPAIYSSNCMIDLYSERSMVKEAEEIF 722



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 138/319 (43%), Gaps = 4/319 (1%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           +F  ++   L P + + Y   + +          E+L  EM    +E+D  T S +    
Sbjct: 408 YFAEMEEAGLQP-DIVSYRTLLYAYSIRHMVAEAEKLITEMDERGLEIDEFTQSALTRMY 466

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
               + +E+  WF R +  G M  E  YSA +D Y + G + E   ++        K   
Sbjct: 467 IDAGMLEESWSWFWRFHLAGHMSSEC-YSANIDAYGERGFILEAERVF-VSCQEEKKCTV 524

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           + F+V+ K +G   DY   + +   MKS GV P+   Y++L++ +  A  P +A +   +
Sbjct: 525 LEFNVMIKAYGVVKDYAKAQKIFDSMKSNGVVPDKCSYSSLIQILTGADMPAMALAYLKK 584

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M  +GL  D    + +I  + K    + A +L+  M ++    D I+Y  L+N  AD G 
Sbjct: 585 MQSAGLVSDCIPYSVVISSFSKLGHLEMADKLYREMVKHGVQPDIIVYGVLINAFADAGS 644

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
           V+EA      MK  D    +   Y +++ +Y   G +  A E ++ + +      +    
Sbjct: 645 VKEAINYVNAMK-RDGLSGNTVIYNSLIKLYTKVGYLKEAHEAYKMLEQTDDGPAIYSSN 703

Query: 473 CLIQCLGKARRIDDLVRVF 491
           C+I    +   + +   +F
Sbjct: 704 CMIDLYSERSMVKEAEEIF 722



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 89/371 (23%), Positives = 162/371 (43%), Gaps = 12/371 (3%)

Query: 113 STYSYNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTRENALLILNSLKFWQKSYF 172
           STY+YN  + D    A +L +   T E  L+     P   T    + I  +    ++  F
Sbjct: 315 STYTYNTLI-DTYGKAGQLKEASTTFENMLKEGVS-PTTVTFNTMIHICGNHGQLKEVTF 372

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
               ++     P +T  YN+ +          L      EM    ++ D ++Y T++   
Sbjct: 373 LMQKMEELQC-PPDTRTYNILISLYAKHDNIDLASNYFAEMEEAGLQPDIVSYRTLLYAY 431

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
              ++  EA +    M + GL  DE T SA+  +Y  +G +EE  S + R   +G     
Sbjct: 432 SIRHMVAEAEKLITEMDERGLEIDEFTQSALTRMYIDAGMLEESWSWFWRFHLAGHMSSE 491

Query: 293 IAFSVLGKMFGESG---DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSL 349
             +S     +GE G   + + +    QE K   V    + +N +++A G       A+ +
Sbjct: 492 -CYSANIDAYGERGFILEAERVFVSCQEEKKCTV----LEFNVMIKAYGVVKDYAKAQKI 546

Query: 350 FDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCAD 409
           FD M  +G+ PD+ + ++LI+I   A     AL   ++M+      D I Y+ +++  + 
Sbjct: 547 FDSMKSNGVVPDKCSYSSLIQILTGADMPAMALAYLKKMQSAGLVSDCIPYSVVISSFSK 606

Query: 410 IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVM 469
           +G +E A++L+ +M +    +PD   Y  ++N +   G+V  AI     M   G++ N +
Sbjct: 607 LGHLEMADKLYREM-VKHGVQPDIIVYGVLINAFADAGSVKEAINYVNAMKRDGLSGNTV 665

Query: 470 GCTCLIQCLGK 480
               LI+   K
Sbjct: 666 IYNSLIKLYTK 676



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 64/344 (18%), Positives = 144/344 (41%), Gaps = 45/344 (13%)

Query: 99  KPRRSVLSLQRQKRSTY-SYNPRVRDLKLFARKLNDCDNTEEAF--LRAITEIPHQPTRE 155
           +  R  +S Q +K+ T   +N  ++   +    + D    ++ F  +++   +P + +  
Sbjct: 508 EAERVFVSCQEEKKCTVLEFNVMIKAYGV----VKDYAKAQKIFDSMKSNGVVPDKCSYS 563

Query: 156 NALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVS 215
           + + IL        +  +   ++S  L   + I Y+V + S       ++ ++L  EMV 
Sbjct: 564 SLIQILTGADMPAMALAYLKKMQSAGLVS-DCIPYSVVISSFSKLGHLEMADKLYREMVK 622

Query: 216 NEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEE 275
           + ++ D I Y  +I          EAI +   M + GL  + V Y++++ +Y K G ++E
Sbjct: 623 HGVQPDIIVYGVLINAFADAGSVKEAINYVNAMKRDGLSGNTVIYNSLIKLYTKVGYLKE 682

Query: 276 VLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLE 335
               Y                   KM  ++ D                 P +   N +++
Sbjct: 683 AHEAY-------------------KMLEQTDD----------------GPAIYSSNCMID 707

Query: 336 AMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPM 395
              +      A  +F+ + + G   +E T   ++ +Y K    ++A+ +  +M+E     
Sbjct: 708 LYSERSMVKEAEEIFESLKKKG-EANEFTFAMMLCMYKKIGRIQEAICVARQMKEQGLLS 766

Query: 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAM 439
           D + +N ++++ A  G  +EA  +F++M +    +PD  +Y ++
Sbjct: 767 DLLSFNNMISLYAMDGRFKEAVSIFQEM-MKAAVQPDECTYKSL 809


>gi|356562834|ref|XP_003549673.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Glycine max]
          Length = 747

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/264 (29%), Positives = 132/264 (50%), Gaps = 3/264 (1%)

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           EA E+  +M   G  PD++TY++I+D Y K G V++   + +  V  G+KPD   +  L 
Sbjct: 278 EAEEYLRKMVNGGFEPDDLTYNSIIDGYCKKGMVQDANRVLKDAVFKGFKPDEFTYCSLI 337

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
             F + GD D    V ++    G++P++V+YNTL++ + + G    A  L +EM E+G  
Sbjct: 338 NGFCKDGDPDRAMAVFKDGLGKGLRPSIVLYNTLIKGLSQQGLILPALQLMNEMAENGCL 397

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN-MCADIGLVEEAER 418
           P+  T   +I    K     DA  L +       P D   YNTL++  C  + L + A  
Sbjct: 398 PNIWTYNLVINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLIDGYCKQLKL-DSATE 456

Query: 419 LFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL 478
           +   M  S    PD  +Y  +LN     G  +  +E+F+ M E G   N++    ++  L
Sbjct: 457 MVNRM-WSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCTPNIITYNIIVDSL 515

Query: 479 GKARRIDDLVRVFGVSIDRGVKPD 502
            KA+++++ V + G    +G+KPD
Sbjct: 516 CKAKKVNEAVDLLGEMKSKGLKPD 539



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 144/318 (45%), Gaps = 6/318 (1%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNI-TYSTIITCAKRCNLFDEAIEWFE 246
           + YN  +K L          QL NEM  N   L NI TY+ +I    +     +A    +
Sbjct: 366 VLYNTLIKGLSQQGLILPALQLMNEMAENGC-LPNIWTYNLVINGLCKMGCVSDASHLVD 424

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
                G  PD  TY+ ++D Y K  K++    +  R  + G  PD I ++ L     ++G
Sbjct: 425 DAIAKGCPPDIFTYNTLIDGYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKAG 484

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
             + +  + + M+  G  PN++ YN +++++ KA K   A  L  EM   GL PD  +  
Sbjct: 485 KSEEVMEIFKAMEEKGCTPNIITYNIIVDSLCKAKKVNEAVDLLGEMKSKGLKPDVVSFG 544

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFI--LYNTLLNMCADIGLVEEAERLFEDMK 424
            L   + K      A +L+ RM E ++ +      YN +++  ++   +  A +LF  MK
Sbjct: 545 TLFTGFCKIGDIDGAYQLFRRM-EKQYDVCHTTATYNIIVSAFSEQLNMNMAMKLFSVMK 603

Query: 425 LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484
            S  C PDNY+Y  +++ +   GN+    +   E  E     ++     ++ CL    ++
Sbjct: 604 NSG-CDPDNYTYRVVIDGFCKMGNITQGYKFLLENMEKRFIPSLTTFGRVLNCLCVKDKV 662

Query: 485 DDLVRVFGVSIDRGVKPD 502
            + V +  + + +G+ P+
Sbjct: 663 HEAVGIIHLMLQKGIVPE 680



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/333 (22%), Positives = 140/333 (42%), Gaps = 37/333 (11%)

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
           E+   +MV+   E D++TY++II    +  +  +A    +     G  PDE TY ++++ 
Sbjct: 280 EEYLRKMVNGGFEPDDLTYNSIIDGYCKKGMVQDANRVLKDAVFKGFKPDEFTYCSLING 339

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
           + K G  +  +++++ G+  G +P  + ++ L K   + G       ++ EM   G  PN
Sbjct: 340 FCKDGDPDRAMAVFKDGLGKGLRPSIVLYNTLIKGLSQQGLILPALQLMNEMAENGCLPN 399

Query: 327 L-----------------------------------VVYNTLLEAMGKAGKPGLARSLFD 351
           +                                     YNTL++   K  K   A  + +
Sbjct: 400 IWTYNLVINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLIDGYCKQLKLDSATEMVN 459

Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411
            M   G+TPD  T   L+    KA  +++ +E+++ M E     + I YN +++      
Sbjct: 460 RMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCTPNIITYNIIVDSLCKAK 519

Query: 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM-SELGVAINVMG 470
            V EA  L  +MK S   KPD  S+  +   +   G++D A +LF  M  +  V      
Sbjct: 520 KVNEAVDLLGEMK-SKGLKPDVVSFGTLFTGFCKIGDIDGAYQLFRRMEKQYDVCHTTAT 578

Query: 471 CTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
              ++    +   ++  +++F V  + G  PD+
Sbjct: 579 YNIIVSAFSEQLNMNMAMKLFSVMKNSGCDPDN 611



 Score = 86.3 bits (212), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 145/336 (43%), Gaps = 48/336 (14%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSN-EIELDNITYST 227
           K+   FN  KS++ F      Y   ++ L    +F+ +E+L +EM  N    L    Y  
Sbjct: 22  KALEMFNSAKSEDGFKHTASTYKCIVQKLGHHGEFEEMEKLLSEMRENVNNALLEGAYIE 81

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
            +    R     EA++ FERM      P   +++AI+++  + G   +   +Y R    G
Sbjct: 82  AMKNYGRKGKVQEAVDTFERMDFYNCDPSVHSHNAIMNILVEFGYHNQAHKVYMRMRDRG 141

Query: 288 WKPDPIAFSVLGKMFGESGD-YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
            + D   +++  K F ++   Y  +R +L+ M  LG   N V Y T++  +  +G+   A
Sbjct: 142 VQSDVYTYTIRIKSFCKTARPYAALR-LLRNMPELGCDSNAVAYCTVVAGLYDSGEHDHA 200

Query: 347 RSLFDEMVESGLTPD--------------------EKTLTALIK-------------IYG 373
           R LFDEM+   L PD                    E+ L  ++K             + G
Sbjct: 201 RELFDEMLARCLCPDVVAFNKLVHVLCKKGLVFESERLLGKVLKRGVCPNLFTFNIFVQG 260

Query: 374 KARWAK-----------DALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED 422
             R              +A E   +M    +  D + YN++++     G+V++A R+ +D
Sbjct: 261 LCREGALDRAVRNSRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYCKKGMVQDANRVLKD 320

Query: 423 MKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458
                + KPD ++Y +++N +   G+ D A+ +F++
Sbjct: 321 AVFKGF-KPDEFTYCSLINGFCKDGDPDRAMAVFKD 355


>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Vitis vinifera]
          Length = 746

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 154/321 (47%), Gaps = 1/321 (0%)

Query: 191 NVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYK 250
           N+ + +L   ++ +  +   ++M    +  D +TY+T+I    R  L +EA E  + M  
Sbjct: 258 NIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSG 317

Query: 251 TGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDG 310
            GL P   TY+AI++   K+GK      + +  +  G  PD   +++L      + +   
Sbjct: 318 KGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMD 377

Query: 311 IRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK 370
              +  EM S GV P+LV ++ L+  + K G    A   F +M  +GL PD    T LI 
Sbjct: 378 AERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIG 437

Query: 371 IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCK 430
            + +     +AL++ + M E    +D + YNT+LN      ++ EA+ LF +M       
Sbjct: 438 GFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMT-ERGVF 496

Query: 431 PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRV 490
           PD Y++T ++N Y   GN++ A+ LFE M +  +  +V+    LI    K   ++ +  +
Sbjct: 497 PDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNEL 556

Query: 491 FGVSIDRGVKPDDRLCGCLLS 511
           +   I R + P+    G L++
Sbjct: 557 WNDMISRRIYPNHISYGILIN 577



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 155/317 (48%), Gaps = 9/317 (2%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIIT-CAKRCNLFDEAIEWFERM 248
           YN  +  L    ++   + + +EM+   +  D  TY+ ++  C +  N+ D A   F+ M
Sbjct: 327 YNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMD-AERIFDEM 385

Query: 249 YKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY 308
              G++PD V++SA++ + +K+G +++ L  +     +G  PD + +++L   F  +G  
Sbjct: 386 PSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVM 445

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
                V  EM   G   ++V YNT+L  + K      A  LF EM E G+ PD  T T L
Sbjct: 446 SEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTL 505

Query: 369 IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428
           I  Y K      A+ L+E M +     D + YNTL++       +E+   L+ DM +S  
Sbjct: 506 INGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDM-ISRR 564

Query: 429 CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ--C-LGKARRID 485
             P++ SY  ++N Y + G V  A  L++EM E G    ++ C  +++  C  G A + D
Sbjct: 565 IYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKAD 624

Query: 486 DLVRVFGVSIDRGVKPD 502
           + +      + +G+ PD
Sbjct: 625 EFLSNM---LLKGIVPD 638



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 138/295 (46%), Gaps = 1/295 (0%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           ++  E+V + ++++  T + +I    +    +    +   M + G+ PD VTY+ +++ Y
Sbjct: 240 EIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAY 299

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            + G +EE   L +     G KP    ++ +     ++G Y   + VL EM  +G+ P+ 
Sbjct: 300 CRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDT 359

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
             YN LL    +      A  +FDEM   G+ PD  + +ALI +  K      AL+ +  
Sbjct: 360 ATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRD 419

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           M+      D ++Y  L+      G++ EA ++ ++M L   C  D  +Y  +LN      
Sbjct: 420 MKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEM-LEQGCVLDVVTYNTILNGLCKEK 478

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            +  A ELF EM+E GV  +    T LI    K   ++  V +F + I R +KPD
Sbjct: 479 MLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPD 533



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 151/335 (45%), Gaps = 6/335 (1%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLA--NEMVSNEIELDNITYSTIIT 230
           +F  +K+  L P + + Y + +    F R   + E L   +EM+     LD +TY+TI+ 
Sbjct: 416 YFRDMKNAGLAP-DNVIYTILIGG--FCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILN 472

Query: 231 CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
              +  +  EA E F  M + G+ PD  T++ +++ Y+K G + + ++L+E  +    KP
Sbjct: 473 GLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKP 532

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
           D + ++ L   F +  + + +  +  +M S  + PN + Y  L+      G    A  L+
Sbjct: 533 DVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLW 592

Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
           DEMVE G      T   ++K Y +A  A  A E    M       D I YNTL+N     
Sbjct: 593 DEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKE 652

Query: 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG 470
             ++ A  L   M+ S    PD  +Y  +LN +   G +  A  +  +M E GV  +   
Sbjct: 653 ENMDRAFALVNKMENSGLL-PDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRST 711

Query: 471 CTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRL 505
            T LI        + +  RV    + RG  PDD+ 
Sbjct: 712 YTSLINGHVTQNNLKEAFRVHDEMLQRGFVPDDKF 746



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 128/264 (48%), Gaps = 1/264 (0%)

Query: 239 DEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
           D A E ++ + ++G+  +  T + +++   K+ K+E   S        G  PD + ++ L
Sbjct: 236 DLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTL 295

Query: 299 GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
              +   G  +    ++  M   G++P +  YN ++  + K GK   A+ + DEM++ G+
Sbjct: 296 INAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGM 355

Query: 359 TPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAER 418
           +PD  T   L+    +     DA  +++ M       D + ++ L+ + +  G +++A +
Sbjct: 356 SPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALK 415

Query: 419 LFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL 478
            F DMK +    PDN  YT ++  +   G +  A+++ +EM E G  ++V+    ++  L
Sbjct: 416 YFRDMKNAGL-APDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGL 474

Query: 479 GKARRIDDLVRVFGVSIDRGVKPD 502
            K + + +   +F    +RGV PD
Sbjct: 475 CKEKMLSEADELFTEMTERGVFPD 498



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 125/281 (44%), Gaps = 11/281 (3%)

Query: 228 IITCAKRCNLFDEAIEWFERM----YKTGLMPDEVTYSAILDVYAKSG--KVEEVLSLYE 281
           I +    C  F  +++ F  M     ++  +PD    + IL +  KSG  +VE V SL  
Sbjct: 118 IDSITSNCPNFKHSLQSFSAMIHILVRSRRLPD--AQAVILRMVRKSGVSRVEIVESLVL 175

Query: 282 RGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG 341
                G   +P+ F +L + + ++          + +KS G+  ++   N+LL  + K G
Sbjct: 176 TYGNCG--SNPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVG 233

Query: 342 KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYN 401
              LA  ++ E+V SG+  +  TL  +I    K +  ++       M E     D + YN
Sbjct: 234 WVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYN 293

Query: 402 TLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461
           TL+N     GL+EEA  L + M      KP  ++Y A++N     G    A  + +EM +
Sbjct: 294 TLINAYCRQGLLEEAFELMDSMS-GKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLK 352

Query: 462 LGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           +G++ +      L+    +   + D  R+F     +GV PD
Sbjct: 353 IGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPD 393


>gi|255661198|gb|ACU25768.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
          Length = 426

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/283 (30%), Positives = 144/283 (50%), Gaps = 7/283 (2%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D  TYST+IT   +  LFD+A+ W ++M +  +  D V YS ++++  K     + +S++
Sbjct: 8   DRYTYSTLITYFGKEGLFDDALSWLQKMEQDRVRGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
            R   SG  PD + ++ +  +FG++  +   R ++ EM++ GV P+ V Y  LL    + 
Sbjct: 68  SRLKRSGIMPDLVVYNSMINVFGKAKLFREARSLISEMRTAGVMPDTVSYTALLTMYVEN 127

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
            K   A S+F EM E     D  T   +I +YG+   AK+A +L+  MR+     + + Y
Sbjct: 128 KKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWSMRKLGIEPNVVSY 187

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           NTLL +  D  L  EA  LF  M+  D  + +  +Y +M+ IYG     + A  L +EM 
Sbjct: 188 NTLLRVYGDAELFGEAIHLFRLMQRKD-IEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 246

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVF------GVSIDR 497
             G+  N +  + +I   GK  ++D    +F      G+ ID+
Sbjct: 247 SRGIEPNAITYSTIISIWGKVGKLDRAAILFEKLRSSGIEIDQ 289



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/325 (23%), Positives = 157/325 (48%), Gaps = 6/325 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K   + P + + YN  +      + F+    L +EM +  +  D ++Y+
Sbjct: 60  YSKAISIFSRLKRSGIMP-DLVVYNSMINVFGKAKLFREARSLISEMRTAGVMPDTVSYT 118

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
            ++T       F EA+  F  M +   + D  T + ++DVY + G  +E   L+      
Sbjct: 119 ALLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWSMRKL 178

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   ++ N+V YN+++   GK  +   A
Sbjct: 179 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKDIEQNVVTYNSMMMIYGKTLEHEKA 238

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L+E++R +   +D +LY T++  
Sbjct: 239 NNLIQEMQSRGIEPNAITYSTIISIWGKVGKLDRAAILFEKLRSSGIEIDQVLYQTMIVA 298

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K      PDN      ++I    G ++ A  +F +  + G   
Sbjct: 299 YERAGLVSHAKRLLHELK-----TPDNIPRDTAIHILARAGRIEEATWVFRQAIDAGEVK 353

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVF 491
           ++     +I    K ++  ++V VF
Sbjct: 354 DITVFERMIDLFSKYKKYSNIVEVF 378



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 147/285 (51%), Gaps = 3/285 (1%)

Query: 199 FGRQFQLIEQLA--NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPD 256
           FG++    + L+   +M  + +  D + YS +I  +++   + +AI  F R+ ++G+MPD
Sbjct: 19  FGKEGLFDDALSWLQKMEQDRVRGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGIMPD 78

Query: 257 EVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQ 316
            V Y+++++V+ K+    E  SL      +G  PD ++++ L  M+ E+  +     V  
Sbjct: 79  LVVYNSMINVFGKAKLFREARSLISEMRTAGVMPDTVSYTALLTMYVENKKFLEALSVFA 138

Query: 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
           EM+ +    +L   N +++  G+ G    A  LF  M + G+ P+  +   L+++YG A 
Sbjct: 139 EMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWSMRKLGIEPNVVSYNTLLRVYGDAE 198

Query: 377 WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY 436
              +A+ L+  M+      + + YN+++ +       E+A  L ++M+ S   +P+  +Y
Sbjct: 199 LFGEAIHLFRLMQRKDIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ-SRGIEPNAITY 257

Query: 437 TAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
           + +++I+G  G +D A  LFE++   G+ I+ +    +I    +A
Sbjct: 258 STIISIWGKVGKLDRAAILFEKLRSSGIEIDQVLYQTMIVAYERA 302



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 130/262 (49%), Gaps = 3/262 (1%)

Query: 252 GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGI 311
            L PD  TYS ++  + K G  ++ LS  ++      + D + +S L ++  +  DY   
Sbjct: 4   ALSPDRYTYSTLITYFGKEGLFDDALSWLQKMEQDRVRGDLVLYSNLIELSRKLCDYSKA 63

Query: 312 RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371
             +   +K  G+ P+LVVYN+++   GKA     ARSL  EM  +G+ PD  + TAL+ +
Sbjct: 64  ISIFSRLKRSGIMPDLVVYNSMINVFGKAKLFREARSLISEMRTAGVMPDTVSYTALLTM 123

Query: 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM-KLSDYCK 430
           Y + +   +AL ++  MRE K  +D    N ++++   +G+ +EA++LF  M KL    +
Sbjct: 124 YVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWSMRKLG--IE 181

Query: 431 PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRV 490
           P+  SY  +L +YG       AI LF  M    +  NV+    ++   GK    +    +
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKDIEQNVVTYNSMMMIYGKTLEHEKANNL 241

Query: 491 FGVSIDRGVKPDDRLCGCLLSV 512
                 RG++P+      ++S+
Sbjct: 242 IQEMQSRGIEPNAITYSTIISI 263



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/238 (20%), Positives = 113/238 (47%), Gaps = 31/238 (13%)

Query: 218 IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL 277
           IE + ++Y+T++       LF EAI  F  M +  +  + VTY++++ +Y K+ + E+  
Sbjct: 180 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKDIEQNVVTYNSMMMIYGKTLEHEKAN 239

Query: 278 SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
           +L +   + G +P+ I +S +  ++G+ G  D    + ++++S G++ + V+Y T++ A 
Sbjct: 240 NLIQEMQSRGIEPNAITYSTIISIWGKVGKLDRAAILFEKLRSSGIEIDQVLYQTMIVAY 299

Query: 338 GKAGKPGLARSLFDEM-------------------------------VESGLTPDEKTLT 366
            +AG    A+ L  E+                               +++G   D     
Sbjct: 300 ERAGLVSHAKRLLHELKTPDNIPRDTAIHILARAGRIEEATWVFRQAIDAGEVKDITVFE 359

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
            +I ++ K +   + +E++++MR  ++  D  +   +LN    +   E+A  ++ +M+
Sbjct: 360 RMIDLFSKYKKYSNIVEVFDKMRGLEYFSDSYVIALVLNAYGKLHEFEKANDVYTEMQ 417



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/191 (22%), Positives = 86/191 (45%), Gaps = 3/191 (1%)

Query: 355 ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
           +  L+PD  T + LI  +GK     DAL   ++M +++   D +LY+ L+ +   +    
Sbjct: 2   DRALSPDRYTYSTLITYFGKEGLFDDALSWLQKMEQDRVRGDLVLYSNLIELSRKLCDYS 61

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
           +A  +F  +K S    PD   Y +M+N++G       A  L  EM   GV  + +  T L
Sbjct: 62  KAISIFSRLKRSG-IMPDLVVYNSMINVFGKAKLFREARSLISEMRTAGVMPDTVSYTAL 120

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ--A 532
           +    + ++  + + VF    +     D   C  ++ V      +++  K+   +++   
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWSMRKLGI 180

Query: 533 NPKLVAFLNLI 543
            P +V++  L+
Sbjct: 181 EPNVVSYNTLL 191



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 80/182 (43%), Gaps = 4/182 (2%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  EM S  IE + ITYSTII+   +    D A   FE++  +G+  D+V Y  ++  Y 
Sbjct: 241 LIQEMQSRGIEPNAITYSTIISIWGKVGKLDRAAILFEKLRSSGIEIDQVLYQTMIVAYE 300

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           ++G V       +R +     PD I       +   +G  +   +V ++    G   ++ 
Sbjct: 301 RAGLVSHA----KRLLHELKTPDNIPRDTAIHILARAGRIEEATWVFRQAIDAGEVKDIT 356

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
           V+  +++   K  K      +FD+M       D   +  ++  YGK    + A +++  M
Sbjct: 357 VFERMIDLFSKYKKYSNIVEVFDKMRGLEYFSDSYVIALVLNAYGKLHEFEKANDVYTEM 416

Query: 389 RE 390
           ++
Sbjct: 417 QD 418


>gi|53793262|dbj|BAD54485.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 713

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 130/254 (51%), Gaps = 1/254 (0%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L +EM +  +ELD   Y  +I      +  DEA     +M ++GL P+ + Y+ ++D   
Sbjct: 420 LLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACF 479

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           KSGKV E +++ ++ + SG++P+ I +  L     ++G  D       +M+ LG+ PN+ 
Sbjct: 480 KSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQ 539

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            Y  L++ + K G    A  LF+EMV  G++ D+   TAL+  Y K     DA  L  +M
Sbjct: 540 AYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKM 599

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
            ++   +D   Y   ++   ++ ++ EA  +F +M +     PD   Y  +++ Y   GN
Sbjct: 600 IDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEM-IGHGIAPDRAVYNCLISKYQKLGN 658

Query: 449 VDNAIELFEEMSEL 462
           ++ AI L +EM  +
Sbjct: 659 LEEAISLQDEMERV 672



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 93/353 (26%), Positives = 159/353 (45%), Gaps = 12/353 (3%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F+ +K     P + + +N  +       +   +EQL  EM  +  + D +TY+ +I C 
Sbjct: 210 LFSRMKEMGCLP-DVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCF 268

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +    + A  +F  M + G+M + VT+S  +D + K G V E + L+ +    G   + 
Sbjct: 269 CKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNE 328

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
             ++ L     ++G  D    +L EM   GV  N+V Y  L++ + K  K   A  +   
Sbjct: 329 FTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRM 388

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M ++G+  +E   T LI  +   + ++ AL L   M+     +D  LY  L+    ++  
Sbjct: 389 MEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHK 448

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
           ++EA+ L   M  S   +P+   YT M++     G V  AI + +++ + G   NV+   
Sbjct: 449 LDEAKSLLTKMDESGL-EPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYC 507

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPD--------DRLC--GCLLSVVSL 515
            LI  L KA  ID+ +  F    D G+ P+        D LC  GCL   V L
Sbjct: 508 ALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQL 560



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 96/356 (26%), Positives = 165/356 (46%), Gaps = 13/356 (3%)

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           EA   F RM + G +PD VT+++++D Y K G+++EV  L E    SG K D + ++ L 
Sbjct: 206 EARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALI 265

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
             F + G  +        MK  GV  N+V ++T ++A  K G    A  LF +M   G+ 
Sbjct: 266 NCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMA 325

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
            +E T T LI    KA    DA+ L + M     P++ + Y  L++       V EAE +
Sbjct: 326 LNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDV 385

Query: 420 FEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479
              M+ +   + +   YT +++ +    N + A+ L  EM   G+ +++     LIQ L 
Sbjct: 386 LRMMEKAGV-RANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLC 444

Query: 480 KARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQA-----NP 534
              ++D+   +     + G++P+  +     +++  C  S  V + I  LQ+       P
Sbjct: 445 NVHKLDEAKSLLTKMDESGLEPNYII---YTTMMDACFKSGKVPEAIAMLQKILDSGFQP 501

Query: 535 KLVAFLNLIEDNSTGFENIKEEFR--NVIKDTEVDARRPFCNCLID-ICRNRNLNE 587
            ++ +  LI D      +I E     N ++D  +D        L+D +C+N  LNE
Sbjct: 502 NVITYCALI-DGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNE 556



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 143/303 (47%), Gaps = 1/303 (0%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L +EMV   + L+ +TY+ ++    +     EA +    M K G+  +E+ Y+ ++  + 
Sbjct: 350 LLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHF 409

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
            +   E+ L L       G + D   +  L +        D  + +L +M   G++PN +
Sbjct: 410 MNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYI 469

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
           +Y T+++A  K+GK   A ++  ++++SG  P+  T  ALI    KA    +A+  + +M
Sbjct: 470 IYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKM 529

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
           R+     +   Y  L++     G + EA +LF +M +      D   YTA+L+ Y   GN
Sbjct: 530 RDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEM-VHKGMSLDKVVYTALLDGYLKQGN 588

Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGC 508
           + +A  L  +M + G+ +++   TC I        + +   VF   I  G+ PD  +  C
Sbjct: 589 LHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNC 648

Query: 509 LLS 511
           L+S
Sbjct: 649 LIS 651



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 107/254 (42%), Gaps = 34/254 (13%)

Query: 279 LYERGVASGWKPDPIAFSV--LGKMFGESGDYDGIRYVLQEMKSLGV------------- 323
           L+   +A G +   +A  V  L  +  + G  D     +  ++ L V             
Sbjct: 107 LHRAALALGPRRSALASVVDTLLSVLADRGLLDDAVRAVARVRELRVPPNTRTCNHILLR 166

Query: 324 ------------------QPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
                              PN+  +N +++ + K G+   ARSLF  M E G  PD  T 
Sbjct: 167 LARDRSGRLVRRLFEQLPAPNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTF 226

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
            +LI  YGK     +  +L E MR +    D + YN L+N     G +E A   F  MK 
Sbjct: 227 NSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMK- 285

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
            +    +  +++  ++ +   G V  A++LF +M   G+A+N    TCLI    KA R+D
Sbjct: 286 REGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLD 345

Query: 486 DLVRVFGVSIDRGV 499
           D + +    + +GV
Sbjct: 346 DAIVLLDEMVRQGV 359


>gi|15219388|ref|NP_178067.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75200795|sp|Q9SAK0.1|PP132_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g79490, mitochondrial; AltName: Full=Protein EMBRYO
           DEFECTIVE 2217; Flags: Precursor
 gi|4835759|gb|AAD30226.1|AC007202_8 T8K14.9 [Arabidopsis thaliana]
 gi|332198129|gb|AEE36250.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 836

 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 121/511 (23%), Positives = 218/511 (42%), Gaps = 34/511 (6%)

Query: 189 FYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERM 248
           + N+ M  L  G  ++  E +   M   +  LD  TY  II    +    D A + F++M
Sbjct: 281 YNNLMMLFLNKGLPYKAFE-IYESMEKTDSLLDGSTYELIIPSLAKSGRLDAAFKLFQQM 339

Query: 249 YKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY 308
            +  L P    +S+++D   K+G+++  + +Y      G +P    F  L   + ++G  
Sbjct: 340 KERKLRPSFSVFSSLVDSMGKAGRLDTSMKVYMEMQGFGHRPSATMFVSLIDSYAKAGKL 399

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
           D    +  EMK  G +PN  +Y  ++E+  K+GK  +A ++F +M ++G  P   T + L
Sbjct: 400 DTALRLWDEMKKSGFRPNFGLYTMIIESHAKSGKLEVAMTVFKDMEKAGFLPTPSTYSCL 459

Query: 369 IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428
           ++++  +     A++++  M           Y +LL + A+  LV+ A ++  +MK   Y
Sbjct: 460 LEMHAGSGQVDSAMKIYNSMTNAGLRPGLSSYISLLTLLANKRLVDVAGKILLEMKAMGY 519

Query: 429 ----CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484
               C  D      +L IY    +VD A++    M   G+  N      L +   K    
Sbjct: 520 SVDVCASD------VLMIYIKDASVDLALKWLRFMGSSGIKTNNFIIRQLFESCMKNGLY 573

Query: 485 DDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIE 544
           D    +    +    K D  L   +L+ +  C+  +   ++++ L     K  AF+  + 
Sbjct: 574 DSARPLLETLVHSAGKVDLVLYTSILAHLVRCQDEDKERQLMSILSATKHKAHAFMCGL- 632

Query: 545 DNSTGFEN--------IKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLG 596
              TG E         ++E ++ +  + E  A R F N L++         RA  +  + 
Sbjct: 633 --FTGPEQRKQPVLTFVREFYQGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVA 690

Query: 597 TLYGLYPGLHNKTLDE---WSLDVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQLFLAE 653
               L+P       D+   WSLDVR+LSVGAA  A+   +    K +L   V+P+     
Sbjct: 691 YENKLFP--KAIVFDQHIAWSLDVRNLSVGAALIAVVHTLHRFRKRMLYYGVVPRRIKLV 748

Query: 654 TGTGTHKFSQGLATAFASHVNKLAAPFRQSE 684
           TG         L    A  ++ + +PF  S+
Sbjct: 749 TGP-------TLKIVIAQMLSSVESPFEVSK 772



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 101/435 (23%), Positives = 195/435 (44%), Gaps = 34/435 (7%)

Query: 156 NALLILNSLKFWQK---SYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANE 212
           N + I  SLK  ++   +   F W K Q  +      Y V    L  GR F  I+ L  E
Sbjct: 171 NMVHITQSLKIVKEVDAALSLFRWAKKQPWYLPSDECYVVLFDGLNQGRDFVGIQSLFEE 230

Query: 213 MV---SNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAK 269
           MV   S+  +L    Y+ +I    +    + A   F++  ++G   D  TY+ ++ ++  
Sbjct: 231 MVQDSSSHGDLSFNAYNQVIQYLAKAEKLEVAFCCFKKAQESGCKIDTQTYNNLMMLFLN 290

Query: 270 SGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVV 329
            G   +   +YE    +    D   + ++     +SG  D    + Q+MK   ++P+  V
Sbjct: 291 KGLPYKAFEIYESMEKTDSLLDGSTYELIIPSLAKSGRLDAAFKLFQQMKERKLRPSFSV 350

Query: 330 YNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMR 389
           +++L+++MGKAG+   +  ++ EM   G  P      +LI  Y KA     AL LW+ M+
Sbjct: 351 FSSLVDSMGKAGRLDTSMKVYMEMQGFGHRPSATMFVSLIDSYAKAGKLDTALRLWDEMK 410

Query: 390 ENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNV 449
           ++ +  +F LY  ++   A  G +E A  +F+DM+ + +  P   +Y+ +L ++   G V
Sbjct: 411 KSGFRPNFGLYTMIIESHAKSGKLEVAMTVFKDMEKAGFL-PTPSTYSCLLEMHAGSGQV 469

Query: 450 DNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL------VRVFGVSIDRGVKPDD 503
           D+A++++  M+  G+   +     L+  L   R +D        ++  G S+D       
Sbjct: 470 DSAMKIYNSMTNAGLRPGLSSYISLLTLLANKRLVDVAGKILLEMKAMGYSVD------- 522

Query: 504 RLCGCLLSVVSLCETSEDVG-KVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIK 562
            +C   + ++ + + S D+  K +  +  +  K   F+            I++ F + +K
Sbjct: 523 -VCASDVLMIYIKDASVDLALKWLRFMGSSGIKTNNFI------------IRQLFESCMK 569

Query: 563 DTEVDARRPFCNCLI 577
           +   D+ RP    L+
Sbjct: 570 NGLYDSARPLLETLV 584


>gi|115460498|ref|NP_001053849.1| Os04g0612800 [Oryza sativa Japonica Group]
 gi|38568022|emb|CAE05207.3| OSJNBa0070C17.14 [Oryza sativa Japonica Group]
 gi|113565420|dbj|BAF15763.1| Os04g0612800 [Oryza sativa Japonica Group]
          Length = 784

 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 120/506 (23%), Positives = 214/506 (42%), Gaps = 22/506 (4%)

Query: 164 LKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRF-GRQFQLIEQLANEMVSNEIELDN 222
           +   + ++F F  ++      +ET  YN  +  L   G  F+  E L +EM S+   LD 
Sbjct: 203 MALLEPAFFCFKRLRDAGFRVLETHAYNALLSLLLTRGLAFKAFEVL-DEMSSSGCALDE 261

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKT-GL-MPDEVTYSAILDVYAKSGKVEEVLSLY 280
            TY  ++    R    D A + F+ M K  G+       Y  ++DV AK+G+++  + +Y
Sbjct: 262 GTYELVVPALARAGRIDAARKMFDEMRKREGIGRASAGMYGVLVDVLAKAGRLDAAMGMY 321

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
              VA G +  P   + + +    +G  D    + +EM+  G++P+  +Y  ++EA  ++
Sbjct: 322 REMVAVGHRASPAVSTAVVEGLVRAGKLDAGMELWEEMRRGGLRPSFGLYTMVVEANARS 381

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G+  +A  LF +M +SG  P   T   L++++  A     A+ L+  M           +
Sbjct: 382 GRLDVATQLFGDMEKSGFFPTPATYACLVEMHASAGQVDAAMRLYHSMANAGQRPGLSTF 441

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
             LL M A+  +++ A ++  +MK S +  P   + + +L IY   G+ + A+     M 
Sbjct: 442 TALLMMLANKRMLDLAAKVLLEMKASGF--PIEVTASDLLMIYIKEGSTELALRWLRFMG 499

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSE 520
             G+  N      L +   K    D    +    +    K D  L   +L+ +  C+   
Sbjct: 500 SAGIRTNNFIIRQLFESCMKTGLYDSARPLLETYVAGAAKVDLILYTSILAHLVRCQDEG 559

Query: 521 DVGKVITCLQQANPKLVAFLNLI-----EDNSTGFENIKEEFRNVIKDTEVDARRPFCNC 575
               ++  L  +  K   F+  +     +        ++E F+ +  D E  A R F N 
Sbjct: 560 RERAIMDILSVSKHKAHDFMCGLFTGPEQRKKPVLSFVREFFQGIDYDNEESAARYFVNV 619

Query: 576 LIDICRNRNLNERAH---ELLYLGTLYGLYPGLHNKTLDE---WSLDVRSLSVGAAQTAL 629
           L++         RA    ++ Y   L+           D+   WSLDVR+LSVGAA  A 
Sbjct: 620 LLNYLVLMGQMNRARCIWKVAYENKLFA-----KAIVFDQHIAWSLDVRNLSVGAALVAT 674

Query: 630 EEWMWTLAKIVLREEVLPQLFLAETG 655
              +    K +L   V+P+     TG
Sbjct: 675 VHTLHRFRKRMLYYGVVPRRIKLVTG 700


>gi|357449185|ref|XP_003594869.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483917|gb|AES65120.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 545

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/340 (26%), Positives = 169/340 (49%), Gaps = 12/340 (3%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSL-RFGR---QFQLIEQLANEMVSNEIELDNI 223
            K+ +F + + +Q  F ++ + Y   +  L R G      QL+ ++  ++V   +    +
Sbjct: 145 HKALYFHDKVVAQG-FQLDQVSYGTLINGLCRVGETKAAVQLLRRVDGKLVRPNV----V 199

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
            YSTII    +  L ++A + +  M    + PD VTYS+++  +   GK++  + L+ R 
Sbjct: 200 MYSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDVVTYSSLISGFCVVGKLKYAVDLFNRM 259

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
           ++    P+   FS+L   F + G     + VL  M    V+ ++V YN+L++      + 
Sbjct: 260 ISDNINPNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQV 319

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
             A+SLF+ M + G+TPD  + + +I  + K +   +A++L+E M   +   + + YN+L
Sbjct: 320 NKAKSLFNVMAQRGVTPDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNSL 379

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDN-YSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
           ++     G    A  L ++M   D  +P N  +Y ++L+      +VD AI L  ++ E 
Sbjct: 380 VDGLCKSGRTSCALELVDEM--HDRGQPSNIITYNSILDAICKNNHVDKAIVLLTKIKEK 437

Query: 463 GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           G+  ++   T LI  L K  R+DD  +VF   + +G  P+
Sbjct: 438 GIQPDIFTYTVLINGLCKVGRLDDAQKVFEDLLVKGYSPN 477



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 148/298 (49%), Gaps = 1/298 (0%)

Query: 194 MKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGL 253
           + SL   +Q+Q    L+ +M  N I+ D IT + ++ C  +      +   F ++ K G 
Sbjct: 65  LGSLLKAKQYQTALSLSQQMEFNGIKPDFITCNLLMNCFSQLGHIKFSFSVFAKILKKGY 124

Query: 254 MPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRY 313
            PD VT++ ++      G+V + L  +++ VA G++ D +++  L       G+      
Sbjct: 125 HPDAVTFTILIKGLCLKGEVHKALYFHDKVVAQGFQLDQVSYGTLINGLCRVGETKAAVQ 184

Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYG 373
           +L+ +    V+PN+V+Y+T++++M K      A  L+ EMV   ++PD  T ++LI  + 
Sbjct: 185 LLRRVDGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDVVTYSSLISGFC 244

Query: 374 KARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDN 433
                K A++L+ RM  +    +   ++ L++     G V EA+ +   M +    K D 
Sbjct: 245 VVGKLKYAVDLFNRMISDNINPNVYTFSILIDGFCKEGKVREAKNVLAVM-MKKNVKLDV 303

Query: 434 YSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
            +Y ++++ Y     V+ A  LF  M++ GV  +V   + +I    K + +D+ +++F
Sbjct: 304 VTYNSLMDGYCLVKQVNKAKSLFNVMAQRGVTPDVWSYSIMINGFCKIKMVDEAMKLF 361



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 117/239 (48%)

Query: 185 METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEW 244
           ++ + YN  M      +Q    + L N M    +  D  +YS +I    +  + DEA++ 
Sbjct: 301 LDVVTYNSLMDGYCLVKQVNKAKSLFNVMAQRGVTPDVWSYSIMINGFCKIKMVDEAMKL 360

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
           FE M+   + P+ VTY++++D   KSG+    L L +     G   + I ++ +     +
Sbjct: 361 FEEMHCKQIFPNVVTYNSLVDGLCKSGRTSCALELVDEMHDRGQPSNIITYNSILDAICK 420

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
           +   D    +L ++K  G+QP++  Y  L+  + K G+   A+ +F++++  G +P+  T
Sbjct: 421 NNHVDKAIVLLTKIKEKGIQPDIFTYTVLINGLCKVGRLDDAQKVFEDLLVKGYSPNIYT 480

Query: 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
            T+LI  +    +  + L +  +M++N    + I Y  L++   +    ++AE+L  +M
Sbjct: 481 YTSLINGFCNKGFFDEGLAMLSKMKDNGCIPNAITYEILIHSLFEKDENDKAEKLLREM 539



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 95/196 (48%), Gaps = 3/196 (1%)

Query: 164 LKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDN 222
           +K   ++   F  +  + +FP   + YN  +  L + GR    +E L +EM       + 
Sbjct: 351 IKMVDEAMKLFEEMHCKQIFP-NVVTYNSLVDGLCKSGRTSCALE-LVDEMHDRGQPSNI 408

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           ITY++I+    + N  D+AI    ++ + G+ PD  TY+ +++   K G++++   ++E 
Sbjct: 409 ITYNSILDAICKNNHVDKAIVLLTKIKEKGIQPDIFTYTVLINGLCKVGRLDDAQKVFED 468

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
            +  G+ P+   ++ L   F   G +D    +L +MK  G  PN + Y  L+ ++ +  +
Sbjct: 469 LLVKGYSPNIYTYTSLINGFCNKGFFDEGLAMLSKMKDNGCIPNAITYEILIHSLFEKDE 528

Query: 343 PGLARSLFDEMVESGL 358
              A  L  EM+  GL
Sbjct: 529 NDKAEKLLREMIARGL 544


>gi|297793693|ref|XP_002864731.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310566|gb|EFH40990.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 732

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/305 (28%), Positives = 152/305 (49%), Gaps = 3/305 (0%)

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
           E+L +EM S  ++ +   Y+  I    R N  +EA + FE M   G++P+  TYSA++D 
Sbjct: 253 EKLLDEMTSLGVKPNVYIYTIYIRDLCRENKMEEAEKMFELMKIHGVVPNLYTYSAMIDG 312

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
           Y K+G + +   LY+  + +   P+ + F  L   F ++ +    R +   M   GV PN
Sbjct: 313 YCKTGNLRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVAARSLFVHMVKFGVDPN 372

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
           L VYN L+    K+G    A  L  EM    L+PD  T T LI          +A  L++
Sbjct: 373 LYVYNCLIHGQCKSGNMLEAMGLLSEMESLNLSPDVFTYTILINGLCTEERLAEANRLFQ 432

Query: 387 RMRENKWPMDFILYNTLLN-MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445
           RM+  +     + YN+L++  C +   +E+A  L  +M  S   +P+  +++ +++ Y  
Sbjct: 433 RMKNERIFPSSVTYNSLIHGFCKEYN-IEKALDLCSEMT-SSGVEPNIITFSTLIDGYCK 490

Query: 446 GGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRL 505
             N+  A+ L+ EM+  G+  +V+  T LI    K   + + +R++   ++ G+ P+D  
Sbjct: 491 VRNIKAAMGLYFEMTIKGIVPDVVTYTTLIDAHFKEANMKEALRLYSDMLEAGIHPNDHT 550

Query: 506 CGCLL 510
             CL+
Sbjct: 551 FACLV 555



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 125/271 (46%), Gaps = 13/271 (4%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L +EM S  +  D  TY+ +I          EA   F+RM    + P  VTY++++  + 
Sbjct: 395 LLSEMESLNLSPDVFTYTILINGLCTEERLAEANRLFQRMKNERIFPSSVTYNSLIHGFC 454

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           K   +E+ L L     +SG +P+ I FS L   + +  +      +  EM   G+ P++V
Sbjct: 455 KEYNIEKALDLCSEMTSSGVEPNIITFSTLIDGYCKVRNIKAAMGLYFEMTIKGIVPDVV 514

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW--- 385
            Y TL++A  K      A  L+ +M+E+G+ P++ T   L+  + K     DA++ +   
Sbjct: 515 TYTTLIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSDAIDFYLEN 574

Query: 386 -------ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTA 438
                    ++ + W   ++ +  L+      G +  A R F DMK S    PD +SY +
Sbjct: 575 NQAATGKSIVQRSCW--KYVGFTCLIEGLCQNGYILRASRFFSDMK-SGGVTPDIWSYVS 631

Query: 439 MLNIYGSGGNVDNAIELFEEMSELGVAINVM 469
           ML  +     + + + L  +M + G+  N+M
Sbjct: 632 MLKAHLREKRITDTMMLHCDMIKTGILPNLM 662



 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 125/301 (41%), Gaps = 38/301 (12%)

Query: 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
           FD     ++ M   GL+PD   YS +     K G   +   L +   + G KP+   +++
Sbjct: 214 FDSVWVDYQLMISRGLVPDVHIYSVLFQCCFKQGFPSKKEKLLDEMTSLGVKPNVYIYTI 273

Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNL------------------------------ 327
             +        +    + + MK  GV PNL                              
Sbjct: 274 YIRDLCRENKMEEAEKMFELMKIHGVVPNLYTYSAMIDGYCKTGNLRQAYGLYKEILVAE 333

Query: 328 -----VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382
                VV+ TL++   KA +   ARSLF  MV+ G+ P+      LI    K+    +A+
Sbjct: 334 LLPNVVVFGTLVDGFCKARELVAARSLFVHMVKFGVDPNLYVYNCLIHGQCKSGNMLEAM 393

Query: 383 ELWERMRENKWPMDFILYNTLLN-MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
            L   M       D   Y  L+N +C +  L  EA RLF+ MK ++   P + +Y ++++
Sbjct: 394 GLLSEMESLNLSPDVFTYTILINGLCTEERLA-EANRLFQRMK-NERIFPSSVTYNSLIH 451

Query: 442 IYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
            +    N++ A++L  EM+  GV  N++  + LI    K R I   + ++     +G+ P
Sbjct: 452 GFCKEYNIEKALDLCSEMTSSGVEPNIITFSTLIDGYCKVRNIKAAMGLYFEMTIKGIVP 511

Query: 502 D 502
           D
Sbjct: 512 D 512



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 120/256 (46%), Gaps = 6/256 (2%)

Query: 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS 296
           LF++A+ W  R  +    PD     AIL+   +  + + V   Y+  ++ G  PD   +S
Sbjct: 181 LFEDAL-WVSREMRCS--PDSKACLAILNGLVRRRRFDSVWVDYQLMISRGLVPDVHIYS 237

Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356
           VL +   + G       +L EM SLGV+PN+ +Y   +  + +  K   A  +F+ M   
Sbjct: 238 VLFQCCFKQGFPSKKEKLLDEMTSLGVKPNVYIYTIYIRDLCRENKMEEAEKMFELMKIH 297

Query: 357 GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN-MCADIGLVEE 415
           G+ P+  T +A+I  Y K    + A  L++ +   +   + +++ TL++  C    LV  
Sbjct: 298 GVVPNLYTYSAMIDGYCKTGNLRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELV-A 356

Query: 416 AERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLI 475
           A  LF  M +     P+ Y Y  +++     GN+  A+ L  EM  L ++ +V   T LI
Sbjct: 357 ARSLFVHM-VKFGVDPNLYVYNCLIHGQCKSGNMLEAMGLLSEMESLNLSPDVFTYTILI 415

Query: 476 QCLGKARRIDDLVRVF 491
             L    R+ +  R+F
Sbjct: 416 NGLCTEERLAEANRLF 431


>gi|218192142|gb|EEC74569.1| hypothetical protein OsI_10130 [Oryza sativa Indica Group]
          Length = 823

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 150/310 (48%), Gaps = 10/310 (3%)

Query: 159 LILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEI 218
           +IL   K W+++   FNW + +    +  I YNV + ++   R++ L+ +L +EM S  +
Sbjct: 113 IILKEQKDWRRAVEIFNWFRRRRRHEVNVIHYNVVLCAVGRARRWDLVARLWHEMHSGGV 172

Query: 219 ELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS 278
             DN TY T+I    +      A+ W   M K GL+PDE+T S +L V+ K+G+ E+   
Sbjct: 173 APDNSTYGTLIDVHCKGGRERMALLWLGDMIKRGLLPDEITMSIVLQVHKKAGEYEKAEL 232

Query: 279 LYERGVASG---WKPDP----IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYN 331
            ++R         K  P      ++ L   +G++G  + +     +M   GV PN+V +N
Sbjct: 233 FFKRWSLESDVKMKGHPCYSLYTYNTLIDTYGKAGQLEKVSDTFNQMLREGVSPNVVTFN 292

Query: 332 TLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMR-E 390
           T++   GK  +     SL   M E    PD +T   LI +Y +      A   + +M+ E
Sbjct: 293 TMIHVWGKHRRMEQVASLMRTMEEFQCLPDTRTYNILISLYREINDIDVAEYYFRKMKAE 352

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
           N  P D +   TLL   +  G+V EA+ L ++M   +    D Y+ +A+  +Y   G ++
Sbjct: 353 NLLP-DVVSCRTLLYGYSIKGMVTEAQALLKEMYERNMV-IDEYTQSAVTRMYVDAGMLE 410

Query: 451 NAIELFEEMS 460
            A   FE+ +
Sbjct: 411 QAWRWFEKFN 420



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 62/266 (23%), Positives = 135/266 (50%), Gaps = 2/266 (0%)

Query: 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
            DEA E  + M + G++PD +TYS+++ + + +   E+ L    +  A+    D + +SV
Sbjct: 475 LDEACEIADGMERYGILPDYLTYSSLIHLMSTAKLPEKALYYLRKMQAAKLLIDCVPYSV 534

Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
           +   F ++G+   +  + +EM + G+Q +  VY+ L++A  + G    A + F  + ++G
Sbjct: 535 VISCFAKNGNLHMVDCLFREMITSGIQADTYVYSILIDAYAEVGDVQKAEAYFGLLKKAG 594

Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417
           L        +LIK+Y K  +  +A ++++ ++      +    N ++++ +D  +V+EA 
Sbjct: 595 LCESATIYNSLIKLYTKVVYLAEAQKMYKLLKSLNADTNLYASNCMIDLYSDHCMVKEAR 654

Query: 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
            +FE++K++   K + +S+  M+ +Y      D A  + +EM   G     +    +IQ 
Sbjct: 655 EIFENLKVTG--KANEFSHAMMVCLYKKIARFDEAHRISKEMQASGFLTQALSYNSVIQM 712

Query: 478 LGKARRIDDLVRVFGVSIDRGVKPDD 503
                R++D +++F   +     P+D
Sbjct: 713 YVSGGRMEDALKIFQKMLASNTPPND 738



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 84/423 (19%), Positives = 161/423 (38%), Gaps = 44/423 (10%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           FN +  + + P   + +N  +      R+ + +  L   M   +   D  TY+ +I+  +
Sbjct: 276 FNQMLREGVSP-NVVTFNTMIHVWGKHRRMEQVASLMRTMEEFQCLPDTRTYNILISLYR 334

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
             N  D A  +F +M    L+PD V+   +L  Y+  G V E  +L +         D  
Sbjct: 335 EINDIDVAEYYFRKMKAENLLPDVVSCRTLLYGYSIKGMVTEAQALLKEMYERNMVIDEY 394

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
             S + +M+ ++G    +    +  +    Q N   ++  ++A G+ G   LA   F   
Sbjct: 395 TQSAVTRMYVDAG---MLEQAWRWFEKFNYQLNSECFSANIDAFGERGHILLAEKAFMCC 451

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
           ++  +         +IK YG      +A E+ + M       D++ Y++L+++ +   L 
Sbjct: 452 IKRKML-STCVCNVMIKAYGLVEKLDEACEIADGMERYGILPDYLTYSSLIHLMSTAKLP 510

Query: 414 EEAERLFEDM---KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG 470
           E+A      M   KL   C P    Y+ +++ +   GN+     LF EM   G+  +   
Sbjct: 511 EKALYYLRKMQAAKLLIDCVP----YSVVISCFAKNGNLHMVDCLFREMITSGIQADTYV 566

Query: 471 CTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQ 530
            + LI    +   +      FG                LL    LCE++     +   L 
Sbjct: 567 YSILIDAYAEVGDVQKAEAYFG----------------LLKKAGLCESA----TIYNSLI 606

Query: 531 QANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAH 590
           +   K+V                 ++   ++K    D      NC+ID+  +  + + A 
Sbjct: 607 KLYTKVVYLAE------------AQKMYKLLKSLNADTNLYASNCMIDLYSDHCMVKEAR 654

Query: 591 ELL 593
           E+ 
Sbjct: 655 EIF 657



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/280 (17%), Positives = 118/280 (42%), Gaps = 37/280 (13%)

Query: 148 IPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIE 207
           +P   T  + + ++++ K  +K+ ++   +++  L  ++ + Y+V +          +++
Sbjct: 491 LPDYLTYSSLIHLMSTAKLPEKALYYLRKMQAAKLL-IDCVPYSVVISCFAKNGNLHMVD 549

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAIL--- 264
            L  EM+++ I+ D   YS +I          +A  +F  + K GL      Y++++   
Sbjct: 550 CLFREMITSGIQADTYVYSILIDAYAEVGDVQKAEAYFGLLKKAGLCESATIYNSLIKLY 609

Query: 265 --------------------------------DVYAKSGKVEEVLSLYERGVASGWKPDP 292
                                           D+Y+    V+E   ++E    +G K + 
Sbjct: 610 TKVVYLAEAQKMYKLLKSLNADTNLYASNCMIDLYSDHCMVKEAREIFENLKVTG-KANE 668

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
            + +++  ++ +   +D    + +EM++ G     + YN++++     G+   A  +F +
Sbjct: 669 FSHAMMVCLYKKIARFDEAHRISKEMQASGFLTQALSYNSVIQMYVSGGRMEDALKIFQK 728

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENK 392
           M+ S   P++ T  AL  I  K   + + +   E +R+N+
Sbjct: 729 MLASNTPPNDATFKALKIILVKRGVSNNDIRRLELLRKNR 768


>gi|449518091|ref|XP_004166077.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g23020-like [Cucumis sativus]
          Length = 859

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 149/310 (48%), Gaps = 13/310 (4%)

Query: 159 LILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEI 218
           +IL     W+++   F W      + +  I YN+ + +L   ++++L+E L  EM    I
Sbjct: 159 IILKEQTSWERALEIFEWFNMAGCYEVNVIHYNIVLGTLGKAQKWRLVESLWVEMNKKGI 218

Query: 219 ELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS 278
           +  N TY T+I    +    +EA+ W ERM + G+ PDEVT   ++ +Y K+G+ ++  S
Sbjct: 219 KPINSTYGTLIDVYSKGGFKEEALVWLERMNEQGMEPDEVTMGIVVQLYKKAGEFQKAES 278

Query: 279 LYERGVASGWKP-DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
            +++     W   + + + +  K    S        V   +    V  +   YNTL++  
Sbjct: 279 FFKK-----WSSCNSMKYEITNKKKAASVK------VESSLHPPHVSLSTYTYNTLIDTY 327

Query: 338 GKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDF 397
           GKAG+   A + F+ M++ G++P   T   +I I G     K+   L ++M E + P D 
Sbjct: 328 GKAGQLKEASTTFENMLKEGVSPTTVTFNTMIHICGNHGQLKEVTFLMQKMEELQCPPDT 387

Query: 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE 457
             YN L+++ A    ++ A   F +M+ +   +PD  SY  +L  Y     V  A +L  
Sbjct: 388 RTYNILISLYAKHDNIDLASNYFAEMEEAG-LQPDIVSYRTLLYAYSIRHMVAEAEKLIT 446

Query: 458 EMSELGVAIN 467
           EM E G+ I+
Sbjct: 447 EMDERGLEID 456



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 135/276 (48%), Gaps = 4/276 (1%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           +NV +K+    + +   +++ + M SN +  D  +YS++I      ++   A+ + ++M 
Sbjct: 528 FNVMIKAYGVVKDYAKAQKIFDSMKSNGVVPDKCSYSSLIQILTGADMPAMALAYLKKMQ 587

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY- 308
             GL+ D + YS ++  ++K G +E    LY   V  G +PD I + VL   F ++G   
Sbjct: 588 SAGLVSDCIPYSVVISSFSKLGHLEMADKLYREMVKHGVQPDIIVYGVLINAFADAGSVK 647

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
           + I YV   MK  G+  N V+YN+L++   K G    A   +  + ++   P   +   +
Sbjct: 648 EAINYV-NAMKRDGLSGNTVIYNSLIKLYTKVGYLKEAHEAYKMLEQTDDGPAIYSSNCM 706

Query: 369 IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428
           I +Y +    K+A E++E +++     +F  +  +L M   IG ++EA  +   MK    
Sbjct: 707 IDLYSERSMVKEAEEIFESLKKKGEANEFT-FAMMLCMYKKIGRIQEAICVARQMKEQGL 765

Query: 429 CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
              D  S+  M+++Y   G    A+ +F+EM +  V
Sbjct: 766 L-SDLLSFNNMISLYAMDGRFKEAVSIFQEMMKAAV 800



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 95/419 (22%), Positives = 174/419 (41%), Gaps = 49/419 (11%)

Query: 217 EIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV 276
            + L   TY+T+I    +     EA   FE M K G+ P  VT++ ++ +    G+++EV
Sbjct: 312 HVSLSTYTYNTLIDTYGKAGQLKEASTTFENMLKEGVSPTTVTFNTMIHICGNHGQLKEV 371

Query: 277 LSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA 336
             L ++       PD   +++L  ++ +  + D       EM+  G+QP++V Y TLL A
Sbjct: 372 TFLMQKMEELQCPPDTRTYNILISLYAKHDNIDLASNYFAEMEEAGLQPDIVSYRTLLYA 431

Query: 337 MGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMD 396
                    A  L  EM E GL  DE T +AL ++Y  A   +++   + R       M 
Sbjct: 432 YSIRHMVAEAEKLITEMDERGLEIDEFTQSALTRMYIDAGMLEESWSWFWRFHLAG-HMS 490

Query: 397 FILYNTLLNMCADIGLVEEAERLF----EDMK---------------LSDYCK------- 430
              Y+  ++   + G + EAER+F    E+ K               + DY K       
Sbjct: 491 SECYSANIDAYGERGFILEAERVFVSCQEEKKCTVLEFNVMIKAYGVVKDYAKAQKIFDS 550

Query: 431 -------PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483
                  PD  SY++++ I         A+   ++M   G+  + +  + +I    K   
Sbjct: 551 MKSNGVVPDKCSYSSLIQILTGADMPAMALAYLKKMQSAGLVSDCIPYSVVISSFSKLGH 610

Query: 484 IDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANP--------K 535
           ++   +++   +  GV+PD  + G L++  +      D G V   +   N          
Sbjct: 611 LEMADKLYREMVKHGVQPDIIVYGVLINAFA------DAGSVKEAINYVNAMKRDGLSGN 664

Query: 536 LVAFLNLIE-DNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELL 593
            V + +LI+     G+     E   +++ T+        NC+ID+   R++ + A E+ 
Sbjct: 665 TVIYNSLIKLYTKVGYLKEAHEAYKMLEQTDDGPAIYSSNCMIDLYSERSMVKEAEEIF 723



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 138/319 (43%), Gaps = 4/319 (1%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           +F  ++   L P + + Y   + +          E+L  EM    +E+D  T S +    
Sbjct: 409 YFAEMEEAGLQP-DIVSYRTLLYAYSIRHMVAEAEKLITEMDERGLEIDEFTQSALTRMY 467

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
               + +E+  WF R +  G M  E  YSA +D Y + G + E   ++        K   
Sbjct: 468 IDAGMLEESWSWFWRFHLAGHMSSEC-YSANIDAYGERGFILEAERVF-VSCQEEKKCTV 525

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           + F+V+ K +G   DY   + +   MKS GV P+   Y++L++ +  A  P +A +   +
Sbjct: 526 LEFNVMIKAYGVVKDYAKAQKIFDSMKSNGVVPDKCSYSSLIQILTGADMPAMALAYLKK 585

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M  +GL  D    + +I  + K    + A +L+  M ++    D I+Y  L+N  AD G 
Sbjct: 586 MQSAGLVSDCIPYSVVISSFSKLGHLEMADKLYREMVKHGVQPDIIVYGVLINAFADAGS 645

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
           V+EA      MK  D    +   Y +++ +Y   G +  A E ++ + +      +    
Sbjct: 646 VKEAINYVNAMK-RDGLSGNTVIYNSLIKLYTKVGYLKEAHEAYKMLEQTDDGPAIYSSN 704

Query: 473 CLIQCLGKARRIDDLVRVF 491
           C+I    +   + +   +F
Sbjct: 705 CMIDLYSERSMVKEAEEIF 723



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 89/371 (23%), Positives = 162/371 (43%), Gaps = 12/371 (3%)

Query: 113 STYSYNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTRENALLILNSLKFWQKSYF 172
           STY+YN  + D    A +L +   T E  L+     P   T    + I  +    ++  F
Sbjct: 316 STYTYNTLI-DTYGKAGQLKEASTTFENMLKEGVS-PTTVTFNTMIHICGNHGQLKEVTF 373

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
               ++     P +T  YN+ +          L      EM    ++ D ++Y T++   
Sbjct: 374 LMQKMEELQC-PPDTRTYNILISLYAKHDNIDLASNYFAEMEEAGLQPDIVSYRTLLYAY 432

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
              ++  EA +    M + GL  DE T SA+  +Y  +G +EE  S + R   +G     
Sbjct: 433 SIRHMVAEAEKLITEMDERGLEIDEFTQSALTRMYIDAGMLEESWSWFWRFHLAGHMSSE 492

Query: 293 IAFSVLGKMFGESG---DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSL 349
             +S     +GE G   + + +    QE K   V    + +N +++A G       A+ +
Sbjct: 493 -CYSANIDAYGERGFILEAERVFVSCQEEKKCTV----LEFNVMIKAYGVVKDYAKAQKI 547

Query: 350 FDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCAD 409
           FD M  +G+ PD+ + ++LI+I   A     AL   ++M+      D I Y+ +++  + 
Sbjct: 548 FDSMKSNGVVPDKCSYSSLIQILTGADMPAMALAYLKKMQSAGLVSDCIPYSVVISSFSK 607

Query: 410 IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVM 469
           +G +E A++L+ +M +    +PD   Y  ++N +   G+V  AI     M   G++ N +
Sbjct: 608 LGHLEMADKLYREM-VKHGVQPDIIVYGVLINAFADAGSVKEAINYVNAMKRDGLSGNTV 666

Query: 470 GCTCLIQCLGK 480
               LI+   K
Sbjct: 667 IYNSLIKLYTK 677



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 64/344 (18%), Positives = 144/344 (41%), Gaps = 45/344 (13%)

Query: 99  KPRRSVLSLQRQKRSTY-SYNPRVRDLKLFARKLNDCDNTEEAF--LRAITEIPHQPTRE 155
           +  R  +S Q +K+ T   +N  ++   +    + D    ++ F  +++   +P + +  
Sbjct: 509 EAERVFVSCQEEKKCTVLEFNVMIKAYGV----VKDYAKAQKIFDSMKSNGVVPDKCSYS 564

Query: 156 NALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVS 215
           + + IL        +  +   ++S  L   + I Y+V + S       ++ ++L  EMV 
Sbjct: 565 SLIQILTGADMPAMALAYLKKMQSAGLVS-DCIPYSVVISSFSKLGHLEMADKLYREMVK 623

Query: 216 NEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEE 275
           + ++ D I Y  +I          EAI +   M + GL  + V Y++++ +Y K G ++E
Sbjct: 624 HGVQPDIIVYGVLINAFADAGSVKEAINYVNAMKRDGLSGNTVIYNSLIKLYTKVGYLKE 683

Query: 276 VLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLE 335
               Y                   KM  ++ D                 P +   N +++
Sbjct: 684 AHEAY-------------------KMLEQTDD----------------GPAIYSSNCMID 708

Query: 336 AMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPM 395
              +      A  +F+ + + G   +E T   ++ +Y K    ++A+ +  +M+E     
Sbjct: 709 LYSERSMVKEAEEIFESLKKKG-EANEFTFAMMLCMYKKIGRIQEAICVARQMKEQGLLS 767

Query: 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAM 439
           D + +N ++++ A  G  +EA  +F++M +    +PD  +Y ++
Sbjct: 768 DLLSFNNMISLYAMDGRFKEAVSIFQEM-MKAAVQPDECTYKSL 810


>gi|255661172|gb|ACU25755.1| pentatricopeptide repeat-containing protein [Junellia seriphioides]
          Length = 426

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/283 (30%), Positives = 145/283 (51%), Gaps = 7/283 (2%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D  TYST+IT   +  LFD A+ W ++M +  +  D V YS ++++  K     + +S++
Sbjct: 8   DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
            R   S + PD +A++ +  +FG++  +   R ++ EM++ GV PN   Y+TLL    + 
Sbjct: 68  SRLKRSRFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVEN 127

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
            K   A S+F EM E     D  T   +I +YG+   AK+A +L+  MR+     + + Y
Sbjct: 128 KKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSY 187

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           NTLL +  D  L  EA  LF  M+  +  + +  +Y +M+ IYG     + A  L +EM 
Sbjct: 188 NTLLRVYGDAELFGEAIHLFRLMQRKN-IEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 246

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVF------GVSIDR 497
             G+  N +  + +I   GK  ++D    +F      GV ID+
Sbjct: 247 NRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQ 289



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/366 (22%), Positives = 169/366 (46%), Gaps = 6/366 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K     P + + YN  +      + F+    L +EM +  +  +  +YS
Sbjct: 60  YSKAISIFSRLKRSRFTP-DLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYS 118

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY + G  +E   L+      
Sbjct: 119 TLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 178

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   ++ N+V YN+++   GK  +   A
Sbjct: 179 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKA 238

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R +   +D +LY T++  
Sbjct: 239 NNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVA 298

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K     +PDN      ++I    G ++ A  +F +  + G   
Sbjct: 299 YERSGLVAHAKRLLHELK-----RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVK 353

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           ++     +I    K ++  ++V VF      G  PD  +   +L+        +    V 
Sbjct: 354 DITVFERMIHLFSKYKKYGNVVEVFDKMCGLGYFPDSNVIALVLNAYGKLHEFDKANDVY 413

Query: 527 TCLQQA 532
             +Q+ 
Sbjct: 414 MEMQEV 419



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 132/257 (51%), Gaps = 1/257 (0%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
            +M  + +  D + YS +I  +++   + +AI  F R+ ++   PD V Y+A+++V+ K+
Sbjct: 33  QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSRFTPDLVAYNAMINVFGKA 92

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
               E  SL      +G  P+  ++S L  M+ E+  +     V  EM+ +    +L   
Sbjct: 93  KLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTC 152

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
           N +++  G+ G    A  LF  M + G+ P+  +   L+++YG A    +A+ L+  M+ 
Sbjct: 153 NIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR 212

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
                + + YN+++ +       E+A  L ++M+ +   +P++ +Y+ +++I+G  G +D
Sbjct: 213 KNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ-NRGIEPNSITYSTIISIWGKVGKLD 271

Query: 451 NAIELFEEMSELGVAIN 467
            A  LF+++   GV I+
Sbjct: 272 RAAMLFQKLRSSGVDID 288



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 124/261 (47%), Gaps = 1/261 (0%)

Query: 252 GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGI 311
            L PD  TYS ++  + K G  +  LS  ++        D + +S L ++  +  DY   
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 312 RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371
             +   +K     P+LV YN ++   GKA     ARSL  EM  +G+TP+  + + L+ +
Sbjct: 64  ISIFSRLKRSRFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTM 123

Query: 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
           Y + +   +AL ++  MRE K  +D    N ++++   +G+ +EA++LF  M+     +P
Sbjct: 124 YVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG-IEP 182

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           +  SY  +L +YG       AI LF  M    +  NV+    ++   GK    +    + 
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 242

Query: 492 GVSIDRGVKPDDRLCGCLLSV 512
               +RG++P+      ++S+
Sbjct: 243 QEMQNRGIEPNSITYSTIISI 263



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/242 (21%), Positives = 105/242 (43%), Gaps = 5/242 (2%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           P+  +    L +    + + ++   F  ++ +N+     + YN  M       + +    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNI-EQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  EM +  IE ++ITYSTII+   +    D A   F+++  +G+  D+V Y  ++  Y 
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYE 300

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           +SG V       +R +    +PD I   +   +   +G  +   +V ++    G   ++ 
Sbjct: 301 RSGLVAHA----KRLLHELKRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDIT 356

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
           V+  ++    K  K G    +FD+M   G  PD   +  ++  YGK      A +++  M
Sbjct: 357 VFERMIHLFSKYKKYGNVVEVFDKMCGLGYFPDSNVIALVLNAYGKLHEFDKANDVYMEM 416

Query: 389 RE 390
           +E
Sbjct: 417 QE 418



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 87/191 (45%), Gaps = 3/191 (1%)

Query: 355 ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
           E  L+PD  T + LI  +GK      AL   ++M +++ P D +LY+ L+ +   +    
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
           +A  +F  +K S +  PD  +Y AM+N++G       A  L  EM   GV  N    + L
Sbjct: 62  KAISIFSRLKRSRFT-PDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN- 533
           +    + ++  + + VF    +     D   C  ++ V      +++  K+   +++   
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180

Query: 534 -PKLVAFLNLI 543
            P +V++  L+
Sbjct: 181 EPNVVSYNTLL 191


>gi|224160015|ref|XP_002338159.1| predicted protein [Populus trichocarpa]
 gi|222871069|gb|EEF08200.1| predicted protein [Populus trichocarpa]
          Length = 368

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/282 (28%), Positives = 143/282 (50%), Gaps = 1/282 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D +TYSTII    +    +EA++ F  M   G+ P+  TY++++       +  E  ++ 
Sbjct: 44  DVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAML 103

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
              ++    P+ + FS+L  +F + G+    R VL+ M  +GV+PN+V Y++L+      
Sbjct: 104 NEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQ 163

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
            +   AR LFD M+  G  PD  +   LI  Y KA+   +A +L+  M       D + Y
Sbjct: 164 AEVFEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSY 223

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           NTL++    +G + EA  LF++M L++   PD  +Y+ +L+ +   G +  A  LF  M 
Sbjct: 224 NTLIDGLCQLGRLREAHDLFKNM-LTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQ 282

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
              +  N++    LI  + K+R + +  ++F     +G++P+
Sbjct: 283 STYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPN 324



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 134/283 (47%), Gaps = 1/283 (0%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + Y+  + SL   R+      + + M +  I  +  TY+++I      + + EA    
Sbjct: 44  DVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAML 103

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
             M    +MP+ VT+S +++++ K G V E   + +     G +P+ + +S L   +   
Sbjct: 104 NEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQ 163

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
            +    R +   M + G +P++  YN L+    KA + G A+ LF+EM+  GLTPD  + 
Sbjct: 164 AEVFEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSY 223

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
             LI    +    ++A +L++ M  N    D   Y+ LL+     G + +A RLF  M+ 
Sbjct: 224 NTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQ- 282

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINV 468
           S Y KP+   Y  +++      N+  A +LF E+   G+  N+
Sbjct: 283 STYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNM 325



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 135/253 (53%), Gaps = 7/253 (2%)

Query: 174 FNWIKSQNLFPMETIF-YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITC- 231
           F+++K++ + P   IF YN  ++ L    +++    + NEM+S  I  + +T+S +I   
Sbjct: 68  FSYMKAKGISP--NIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIF 125

Query: 232 AKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291
            K  N+F EA    + M + G+ P+ VTYS++++ Y+   +V E   L++  +  G KPD
Sbjct: 126 CKEGNVF-EARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKGCKPD 184

Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
             ++++L   + ++      + +  EM   G+ P++V YNTL++ + + G+   A  LF 
Sbjct: 185 VFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFK 244

Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN-MCADI 410
            M+ +G  PD  T + L+  + K  +   A  L+  M+      + ++YN L++ MC   
Sbjct: 245 NMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSR 304

Query: 411 GLVEEAERLFEDM 423
            L +EA +LF ++
Sbjct: 305 NL-KEARKLFSEL 316



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 88/341 (25%), Positives = 161/341 (47%), Gaps = 19/341 (5%)

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
           VA G++PD   ++ +     + G+      + ++M   G QP++V Y+T+++++ K  + 
Sbjct: 2   VARGYQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRRV 61

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIK-IYGKARWAKDALELWERMRENKWPMDFILYNT 402
             A  +F  M   G++P+  T  +LI+ +   +RW + +  L E M  N  P + + ++ 
Sbjct: 62  NEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMP-NIVTFSL 120

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
           L+N+    G V EA  + + M      +P+  +Y++++N Y     V  A +LF+ M   
Sbjct: 121 LINIFCKEGNVFEARGVLKTMTEMG-VEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITK 179

Query: 463 GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCET---- 518
           G   +V     LI    KA+RI +  ++F   I +G+ PD      L+    LC+     
Sbjct: 180 GCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLID--GLCQLGRLR 237

Query: 519 -SEDVGKVITCLQQAN-PKLVAFLNLIEDNSTGFENIKEEFR--NVIKDTEVDARRPFCN 574
            + D+ K    L   N P L  + +++ D       + + FR    ++ T +       N
Sbjct: 238 EAHDLFK--NMLTNGNLPDLCTY-SILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYN 294

Query: 575 CLID-ICRNRNLNERAHELLYLGTLYGLYPGL-HNKTLDEW 613
            LID +C++RNL E A +L     + GL P + H K  + W
Sbjct: 295 ILIDAMCKSRNLKE-ARKLFSELFVQGLQPNMKHWKLFEIW 334



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 95/201 (47%), Gaps = 18/201 (8%)

Query: 192 VTMKSLRFGRQFQL----IEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           VT  SL  G   Q       +L + M++   + D  +Y+ +I    +     EA + F  
Sbjct: 151 VTYSSLMNGYSLQAEVFEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNE 210

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M   GL PD V+Y+ ++D   + G++ E   L++  + +G  PD   +S+L   F + G 
Sbjct: 211 MIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGY 270

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
                 + + M+S  ++PN+V+YN L++AM K+     AR LF E+   GL P+ K    
Sbjct: 271 LAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNMK---- 326

Query: 368 LIKIYGKARWAKDALELWERM 388
                    W     E+W+RM
Sbjct: 327 --------HW--KLFEIWKRM 337



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 93/185 (50%), Gaps = 1/185 (0%)

Query: 318 MKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARW 377
           M + G QP++  Y T++  + K G+   A  LF +M E+G  PD  T + +I    K R 
Sbjct: 1   MVARGYQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRR 60

Query: 378 AKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYT 437
             +AL+++  M+      +   YN+L+    +     EA  +  +M +S    P+  +++
Sbjct: 61  VNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEM-MSLNIMPNIVTFS 119

Query: 438 AMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDR 497
            ++NI+   GNV  A  + + M+E+GV  NV+  + L+        + +  ++F V I +
Sbjct: 120 LLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITK 179

Query: 498 GVKPD 502
           G KPD
Sbjct: 180 GCKPD 184


>gi|15219527|ref|NP_177512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169780|sp|Q9C9U0.1|PP118_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g73710
 gi|12324197|gb|AAG52063.1|AC012679_1 hypothetical protein; 49134-52109 [Arabidopsis thaliana]
 gi|332197379|gb|AEE35500.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 991

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/271 (27%), Positives = 136/271 (50%), Gaps = 2/271 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D + Y+ +I    +  L ++A+  F+ M   G  PDE TY+++  + A    V+E   + 
Sbjct: 514 DVLEYNVMIKAYGKAKLHEKALSLFKGMKNQGTWPDECTYNSLFQMLAGVDLVDEAQRIL 573

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
              + SG KP    ++ +   +   G       + + M+  GV+PN VVY +L+    ++
Sbjct: 574 AEMLDSGCKPGCKTYAAMIASYVRLGLLSDAVDLYEAMEKTGVKPNEVVYGSLINGFAES 633

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G    A   F  M E G+  +   LT+LIK Y K    ++A  ++++M++++   D    
Sbjct: 634 GMVEEAIQYFRMMEEHGVQSNHIVLTSLIKAYSKVGCLEEARRVYDKMKDSEGGPDVAAS 693

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           N++L++CAD+G+V EAE +F  ++    C  D  S+  M+ +Y   G +D AIE+ EEM 
Sbjct: 694 NSMLSLCADLGIVSEAESIFNALREKGTC--DVISFATMMYLYKGMGMLDEAIEVAEEMR 751

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           E G+  +      ++ C     ++ +   +F
Sbjct: 752 ESGLLSDCTSFNQVMACYAADGQLSECCELF 782



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 94/357 (26%), Positives = 173/357 (48%), Gaps = 27/357 (7%)

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           P++T+ +N  + +          E L  +M    I  D  TY+ +++        + A+E
Sbjct: 337 PIDTVTFNTMIHTCGTHGHLSEAESLLKKMEEKGISPDTKTYNILLSLHADAGDIEAALE 396

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
           ++ ++ K GL PD VT+ A+L +  +   V EV ++      +  + D  +  V+ +M+ 
Sbjct: 397 YYRKIRKVGLFPDTVTHRAVLHILCQRKMVAEVEAVIAEMDRNSIRIDEHSVPVIMQMYV 456

Query: 304 ESGDYDGIRYVLQEMKSL--GVQPNLVVYNTLLEAMGKA-GKPGL---ARSLF-DEMVES 356
             G       ++ + K+L    Q + V+ +T L A+     + GL   A ++F  +   S
Sbjct: 457 NEG-------LVVQAKALFERFQLDCVLSSTTLAAVIDVYAEKGLWVEAETVFYGKRNMS 509

Query: 357 GLTPDEKTLTALIKIYGKARWAKDALELWERMR-ENKWPMDFILYNTLLNMCADIGLVEE 415
           G   D      +IK YGKA+  + AL L++ M+ +  WP D   YN+L  M A + LV+E
Sbjct: 510 GQRNDVLEYNVMIKAYGKAKLHEKALSLFKGMKNQGTWP-DECTYNSLFQMLAGVDLVDE 568

Query: 416 AERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLI 475
           A+R+  +M L   CKP   +Y AM+  Y   G + +A++L+E M + GV  N +    LI
Sbjct: 569 AQRILAEM-LDSGCKPGCKTYAAMIASYVRLGLLSDAVDLYEAMEKTGVKPNEVVYGSLI 627

Query: 476 QCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQA 532
               ++  +++ ++ F +  + GV+ +       + + SL +    VG    CL++A
Sbjct: 628 NGFAESGMVEEAIQYFRMMEEHGVQSNH------IVLTSLIKAYSKVG----CLEEA 674



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 133/289 (46%), Gaps = 2/289 (0%)

Query: 165 KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNIT 224
           K  +K+   F  +K+Q  +P E   YN   + L         +++  EM+ +  +    T
Sbjct: 529 KLHEKALSLFKGMKNQGTWPDECT-YNSLFQMLAGVDLVDEAQRILAEMLDSGCKPGCKT 587

Query: 225 YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
           Y+ +I    R  L  +A++ +E M KTG+ P+EV Y ++++ +A+SG VEE +  +    
Sbjct: 588 YAAMIASYVRLGLLSDAVDLYEAMEKTGVKPNEVVYGSLINGFAESGMVEEAIQYFRMME 647

Query: 285 ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344
             G + + I  + L K + + G  +  R V  +MK     P++   N++L      G   
Sbjct: 648 EHGVQSNHIVLTSLIKAYSKVGCLEEARRVYDKMKDSEGGPDVAASNSMLSLCADLGIVS 707

Query: 345 LARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
            A S+F+ + E G T D  +   ++ +Y       +A+E+ E MRE+    D   +N ++
Sbjct: 708 EAESIFNALREKG-TCDVISFATMMYLYKGMGMLDEAIEVAEEMRESGLLSDCTSFNQVM 766

Query: 405 NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAI 453
              A  G + E   LF +M +      D  ++  +  +   GG    A+
Sbjct: 767 ACYAADGQLSECCELFHEMLVERKLLLDWGTFKTLFTLLKKGGVPSEAV 815



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 80/327 (24%), Positives = 146/327 (44%), Gaps = 39/327 (11%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           ++  I+   LFP +T+ +   +  L   +    +E +  EM  N I +D  +   I+   
Sbjct: 397 YYRKIRKVGLFP-DTVTHRAVLHILCQRKMVAEVEAVIAEMDRNSIRIDEHSVPVIMQMY 455

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK-VEEVLSLYERGVASGWKPD 291
               L  +A   FER ++   +    T +A++DVYA+ G  VE     Y +   SG + D
Sbjct: 456 VNEGLVVQAKALFER-FQLDCVLSSTTLAAVIDVYAEKGLWVEAETVFYGKRNMSGQRND 514

Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
            + ++V+ K +G++  ++    + + MK+ G  P+   YN+L + +        A+ +  
Sbjct: 515 VLEYNVMIKAYGKAKLHEKALSLFKGMKNQGTWPDECTYNSLFQMLAGVDLVDEAQRILA 574

Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411
           EM++SG  P  KT  A+I  Y +     DA++L+E M +     + ++Y +L+N  A+ G
Sbjct: 575 EMLDSGCKPGCKTYAAMIASYVRLGLLSDAVDLYEAMEKTGVKPNEVVYGSLINGFAESG 634

Query: 412 LVEEA-----------------------------------ERLFEDMKLSDYCKPDNYSY 436
           +VEEA                                    R+++ MK S+   PD  + 
Sbjct: 635 MVEEAIQYFRMMEEHGVQSNHIVLTSLIKAYSKVGCLEEARRVYDKMKDSE-GGPDVAAS 693

Query: 437 TAMLNIYGSGGNVDNAIELFEEMSELG 463
            +ML++    G V  A  +F  + E G
Sbjct: 694 NSMLSLCADLGIVSEAESIFNALREKG 720



 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 76/346 (21%), Positives = 141/346 (40%), Gaps = 56/346 (16%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           W++    F + +S   +    I YN+ +++L    ++  +     EM  N +   N TY 
Sbjct: 125 WERVLRVFRFFQSHQSYVPNVIHYNIVLRALGRAGKWDELRLCWIEMAHNGVLPTNNTYG 184

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV---------- 276
            ++    +  L  EA+ W + M +    PDEVT + ++ V+  SG+ +            
Sbjct: 185 MLVDVYGKAGLVKEALLWIKHMGQRMHFPDEVTMATVVRVFKNSGEFDRADRFFKGWCAG 244

Query: 277 -----------------------------LSLYERGV----------ASGWKPDP----- 292
                                        + L++ G           ASG    P     
Sbjct: 245 KVDLDLDSIDDFPKNGSAQSPVNLKQFLSMELFKVGARNPIEKSLHFASGSDSSPRKPRL 304

Query: 293 -IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
              F+ L  ++G++G  +    +  EM   GV  + V +NT++   G  G    A SL  
Sbjct: 305 TSTFNTLIDLYGKAGRLNDAANLFSEMLKSGVPIDTVTFNTMIHTCGTHGHLSEAESLLK 364

Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411
           +M E G++PD KT   L+ ++  A   + ALE + ++R+     D + +  +L++     
Sbjct: 365 KMEEKGISPDTKTYNILLSLHADAGDIEAALEYYRKIRKVGLFPDTVTHRAVLHILCQRK 424

Query: 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE 457
           +V E E +  +M   +  + D +S   ++ +Y + G V  A  LFE
Sbjct: 425 MVAEVEAVIAEMD-RNSIRIDEHSVPVIMQMYVNEGLVVQAKALFE 469



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 125/282 (44%), Gaps = 9/282 (3%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           T++T+I    +    ++A   F  M K+G+  D VT++ ++      G + E  SL ++ 
Sbjct: 307 TFNTLIDLYGKAGRLNDAANLFSEMLKSGVPIDTVTFNTMIHTCGTHGHLSEAESLLKKM 366

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
              G  PD   +++L  +  ++GD +      ++++ +G+ P+ V +  +L  + +    
Sbjct: 367 EEKGISPDTKTYNILLSLHADAGDIEAALEYYRKIRKVGLFPDTVTHRAVLHILCQRKMV 426

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
               ++  EM  + +  DE ++  ++++Y        A  L+ER +     +D +L +T 
Sbjct: 427 AEVEAVIAEMDRNSIRIDEHSVPVIMQMYVNEGLVVQAKALFERFQ-----LDCVLSSTT 481

Query: 404 LNMCADI----GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           L    D+    GL  EAE +F   +     + D   Y  M+  YG     + A+ LF+ M
Sbjct: 482 LAAVIDVYAEKGLWVEAETVFYGKRNMSGQRNDVLEYNVMIKAYGKAKLHEKALSLFKGM 541

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
              G   +      L Q L     +D+  R+    +D G KP
Sbjct: 542 KNQGTWPDECTYNSLFQMLAGVDLVDEAQRILAEMLDSGCKP 583



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/270 (21%), Positives = 126/270 (46%), Gaps = 3/270 (1%)

Query: 259 TYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEM 318
           T++ ++D+Y K+G++ +  +L+   + SG   D + F+ +    G  G       +L++M
Sbjct: 307 TFNTLIDLYGKAGRLNDAANLFSEMLKSGVPIDTVTFNTMIHTCGTHGHLSEAESLLKKM 366

Query: 319 KSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWA 378
           +  G+ P+   YN LL     AG    A   + ++ + GL PD  T  A++ I  + +  
Sbjct: 367 EEKGISPDTKTYNILLSLHADAGDIEAALEYYRKIRKVGLFPDTVTHRAVLHILCQRKMV 426

Query: 379 KDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTA 438
            +   +   M  N   +D      ++ M  + GLV +A+ LFE  +L   C   + +  A
Sbjct: 427 AEVEAVIAEMDRNSIRIDEHSVPVIMQMYVNEGLVVQAKALFERFQLD--CVLSSTTLAA 484

Query: 439 MLNIYGSGGN-VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDR 497
           ++++Y   G  V+     + + +  G   +V+    +I+  GKA+  +  + +F    ++
Sbjct: 485 VIDVYAEKGLWVEAETVFYGKRNMSGQRNDVLEYNVMIKAYGKAKLHEKALSLFKGMKNQ 544

Query: 498 GVKPDDRLCGCLLSVVSLCETSEDVGKVIT 527
           G  PD+     L  +++  +  ++  +++ 
Sbjct: 545 GTWPDECTYNSLFQMLAGVDLVDEAQRILA 574



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 104/245 (42%), Gaps = 12/245 (4%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D I+++T++   K   + DEAIE  E M ++GL+ D  +++ ++  YA  G++ E   L+
Sbjct: 723 DVISFATMMYLYKGMGMLDEAIEVAEEMRESGLLSDCTSFNQVMACYAADGQLSECCELF 782

Query: 281 -----ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLE 335
                ER +   W      F++L K    S     ++    E K L       +  TL  
Sbjct: 783 HEMLVERKLLLDWGTFKTLFTLLKKGGVPSEAVSQLQTAYNEAKPLATP---AITATLFS 839

Query: 336 AMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPM 395
           AMG       A     E+    +  +     A+I  Y  +     AL+ + RM+E     
Sbjct: 840 AMGLYA---YALESCQELTSGEIPREHFAYNAVIYTYSASGDIDMALKAYMRMQEKGLEP 896

Query: 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIEL 455
           D +    L+ +    G+VE  +R+   +   +  +P    + A+ + Y S    D A  +
Sbjct: 897 DIVTQAYLVGIYGKAGMVEGVKRVHSRLTFGE-LEPSQSLFKAVRDAYVSANRQDLADVV 955

Query: 456 FEEMS 460
            +EMS
Sbjct: 956 KKEMS 960



 Score = 47.4 bits (111), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 50/108 (46%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
            E+ S EI  ++  Y+ +I         D A++ + RM + GL PD VT + ++ +Y K+
Sbjct: 852 QELTSGEIPREHFAYNAVIYTYSASGDIDMALKAYMRMQEKGLEPDIVTQAYLVGIYGKA 911

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEM 318
           G VE V  ++ R      +P    F  +   +  +   D    V +EM
Sbjct: 912 GMVEGVKRVHSRLTFGELEPSQSLFKAVRDAYVSANRQDLADVVKKEM 959


>gi|357134934|ref|XP_003569069.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Brachypodium distachyon]
          Length = 642

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 148/313 (47%), Gaps = 1/313 (0%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN  + +L    + + +  + +EMV   +  D + Y++I+    +      A     RM 
Sbjct: 230 YNAVVHALCGQFRMREVFLVVDEMVHRGLRPDTVAYTSIVGAFCKARELRMACAILARMV 289

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
             G +P+  T++ ++  +   GKV + L ++   VA GW P  I+++VL +     GD  
Sbjct: 290 TEGCVPNVQTFTVLVKGFFDDGKVHDALGMWNWMVAEGWAPSTISYNVLIRGLCHIGDLK 349

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
              +V   M      P++  Y+TL++   KAG   +A S++++M  +G  P+    T ++
Sbjct: 350 RALFVFSCMGKSDCLPDVRTYSTLIDGFSKAGDLDVAMSIWNDMTNAGCKPNVVVYTNMV 409

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
            +  K      A  L ++M     P + + +NTL+    D+G    A  +F  M+    C
Sbjct: 410 DVLCKKVMFDQAENLIDKMSLENCPPNTLTFNTLIRSLCDLGRAGRALNVFHGMRRYG-C 468

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
            P++ +Y  +L+     GN ++A+ +  EM   G  ++++     I  L + R I + + 
Sbjct: 469 PPNDRTYNELLHGLFREGNCEDALRMLTEMLNHGFELSLVSYNTTISGLCQMRMIKEAMI 528

Query: 490 VFGVSIDRGVKPD 502
           + G  I +G++PD
Sbjct: 529 LLGRMIIQGIQPD 541



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/293 (22%), Positives = 140/293 (47%), Gaps = 1/293 (0%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
           N MV+       I+Y+ +I           A+  F  M K+  +PD  TYS ++D ++K+
Sbjct: 321 NWMVAEGWAPSTISYNVLIRGLCHIGDLKRALFVFSCMGKSDCLPDVRTYSTLIDGFSKA 380

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
           G ++  +S++     +G KP+ + ++ +  +  +   +D    ++ +M      PN + +
Sbjct: 381 GDLDVAMSIWNDMTNAGCKPNVVVYTNMVDVLCKKVMFDQAENLIDKMSLENCPPNTLTF 440

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
           NTL+ ++   G+ G A ++F  M   G  P+++T   L+    +    +DAL +   M  
Sbjct: 441 NTLIRSLCDLGRAGRALNVFHGMRRYGCPPNDRTYNELLHGLFREGNCEDALRMLTEMLN 500

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
           + + +  + YNT ++    + +++EA  L   M +    +PD +++ A+++ Y   GNV 
Sbjct: 501 HGFELSLVSYNTTISGLCQMRMIKEAMILLGRMIIQGI-QPDAFTFNAIIHAYCKEGNVR 559

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
            A  +   M  +    N++  T L+  L    ++DD +      +  G+ P++
Sbjct: 560 AAAWMLGRMDAVNCPRNIVAYTSLMSGLCSQHKLDDAMVYLLKMLYEGICPNE 612



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 135/296 (45%), Gaps = 6/296 (2%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN  + +L        +  + + M    +E +  TY+ +I    + +    A    + M 
Sbjct: 130 YNHLLDALLRENLVAAVVPVYDNMRKAGVEPNVYTYNLLIKALCQNDRVGAARRMLDEMA 189

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
           + G  PDEV+++ I+    K  +++E      RG+ +   P   +++ +           
Sbjct: 190 RKGCRPDEVSHTTIISALCKLDRLDEA-----RGILAEMTPVGASYNAVVHALCGQFRMR 244

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
            +  V+ EM   G++P+ V Y +++ A  KA +  +A ++   MV  G  P+ +T T L+
Sbjct: 245 EVFLVVDEMVHRGLRPDTVAYTSIVGAFCKARELRMACAILARMVTEGCVPNVQTFTVLV 304

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
           K +       DAL +W  M    W    I YN L+     IG ++ A  +F  M  SD C
Sbjct: 305 KGFFDDGKVHDALGMWNWMVAEGWAPSTISYNVLIRGLCHIGDLKRALFVFSCMGKSD-C 363

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
            PD  +Y+ +++ +   G++D A+ ++ +M+  G   NV+  T ++  L K    D
Sbjct: 364 LPDVRTYSTLIDGFSKAGDLDVAMSIWNDMTNAGCKPNVVVYTNMVDVLCKKVMFD 419



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 74/315 (23%), Positives = 138/315 (43%), Gaps = 6/315 (1%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN+ +K+L    +     ++ +EM       D ++++TII+   + +  DEA      M 
Sbjct: 165 YNLLIKALCQNDRVGAARRMLDEMARKGCRPDEVSHTTIISALCKLDRLDEARGILAEMT 224

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
             G      +Y+A++       ++ EV  + +  V  G +PD +A++ +   F ++ +  
Sbjct: 225 PVG-----ASYNAVVHALCGQFRMREVFLVVDEMVHRGLRPDTVAYTSIVGAFCKARELR 279

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               +L  M + G  PN+  +  L++     GK   A  +++ MV  G  P   +   LI
Sbjct: 280 MACAILARMVTEGCVPNVQTFTVLVKGFFDDGKVHDALGMWNWMVAEGWAPSTISYNVLI 339

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
           +        K AL ++  M ++    D   Y+TL++  +  G ++ A  ++ DM  +  C
Sbjct: 340 RGLCHIGDLKRALFVFSCMGKSDCLPDVRTYSTLIDGFSKAGDLDVAMSIWNDMTNAG-C 398

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
           KP+   YT M+++       D A  L ++MS      N +    LI+ L    R    + 
Sbjct: 399 KPNVVVYTNMVDVLCKKVMFDQAENLIDKMSLENCPPNTLTFNTLIRSLCDLGRAGRALN 458

Query: 490 VFGVSIDRGVKPDDR 504
           VF      G  P+DR
Sbjct: 459 VFHGMRRYGCPPNDR 473



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 48/239 (20%), Positives = 105/239 (43%), Gaps = 3/239 (1%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           +++ F F+ +   +  P +   Y+  +          +   + N+M +   + + + Y+ 
Sbjct: 349 KRALFVFSCMGKSDCLP-DVRTYSTLIDGFSKAGDLDVAMSIWNDMTNAGCKPNVVVYTN 407

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           ++    +  +FD+A    ++M      P+ +T++ ++      G+    L+++      G
Sbjct: 408 MVDVLCKKVMFDQAENLIDKMSLENCPPNTLTFNTLIRSLCDLGRAGRALNVFHGMRRYG 467

Query: 288 WKPDPIAFS-VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
             P+   ++ +L  +F E    D +R +L EM + G + +LV YNT +  + +      A
Sbjct: 468 CPPNDRTYNELLHGLFREGNCEDALR-MLTEMLNHGFELSLVSYNTTISGLCQMRMIKEA 526

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405
             L   M+  G+ PD  T  A+I  Y K    + A  +  RM     P + + Y +L++
Sbjct: 527 MILLGRMIIQGIQPDAFTFNAIIHAYCKEGNVRAAAWMLGRMDAVNCPRNIVAYTSLMS 585



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/263 (22%), Positives = 106/263 (40%), Gaps = 16/263 (6%)

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER-----GVASGWKPDPIAFSVLG 299
            + M   G+   E    A +  +A++G  +  L  + R     G A+   P    ++ L 
Sbjct: 78  LQEMRLRGVACPEGALVAAICAFARAGAADRALKTFYRARHDLGCAA---PTVRVYNHLL 134

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
                      +  V   M+  GV+PN+  YN L++A+ +  + G AR + DEM   G  
Sbjct: 135 DALLRENLVAAVVPVYDNMRKAGVEPNVYTYNLLIKALCQNDRVGAARRMLDEMARKGCR 194

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN-MCADIGLVEEAER 418
           PDE + T +I    K     +A  +   M     P+    YN +++ +C    + E    
Sbjct: 195 PDEVSHTTIISALCKLDRLDEARGILAEMT----PVG-ASYNAVVHALCGQFRMREVF-- 247

Query: 419 LFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL 478
           L  D  +    +PD  +YT+++  +     +  A  +   M   G   NV   T L++  
Sbjct: 248 LVVDEMVHRGLRPDTVAYTSIVGAFCKARELRMACAILARMVTEGCVPNVQTFTVLVKGF 307

Query: 479 GKARRIDDLVRVFGVSIDRGVKP 501
               ++ D + ++   +  G  P
Sbjct: 308 FDDGKVHDALGMWNWMVAEGWAP 330



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 87/205 (42%), Gaps = 8/205 (3%)

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA-RSLFDEMVESGL 358
           +    +GD DG++Y LQEM+  GV          + A  +AG    A ++ +    + G 
Sbjct: 63  RRLAAAGDLDGVQYTLQEMRLRGVACPEGALVAAICAFARAGAADRALKTFYRARHDLGC 122

Query: 359 -TPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417
             P  +    L+    +       + +++ MR+     +   YN L+        V  A 
Sbjct: 123 AAPTVRVYNHLLDALLRENLVAAVVPVYDNMRKAGVEPNVYTYNLLIKALCQNDRVGAAR 182

Query: 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
           R+ ++M     C+PD  S+T +++       +D A  +  EM+ +G + N      ++  
Sbjct: 183 RMLDEMARKG-CRPDEVSHTTIISALCKLDRLDEARGILAEMTPVGASYNA-----VVHA 236

Query: 478 LGKARRIDDLVRVFGVSIDRGVKPD 502
           L    R+ ++  V    + RG++PD
Sbjct: 237 LCGQFRMREVFLVVDEMVHRGLRPD 261


>gi|41152686|dbj|BAD08211.1| hypothetical protein [Oryza sativa Indica Group]
 gi|67906118|dbj|BAE00069.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 142/292 (48%), Gaps = 1/292 (0%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
           +EM+   I  + +TY++II    +    D+A+E    M K G+MP+  TY++I+  Y  S
Sbjct: 223 HEMLDRGILPNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSS 282

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
           G+ +E +   ++  + G +PD + ++ L     ++G     R +   M   G++P +  Y
Sbjct: 283 GQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTY 342

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
            TLL+     G       L D MV +G+ P+    + LI  Y K      A+ ++ +MR+
Sbjct: 343 GTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQ 402

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
                D + Y T++ +    G VE+A R FE M + +   P N  Y ++++        D
Sbjct: 403 QGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQM-IDERLSPGNIVYNSLIHSLCIFDKWD 461

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            A EL  EM + G+ ++ +    +I    K  R+ +  ++F + +  GVKP+
Sbjct: 462 KAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPN 513



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 84/304 (27%), Positives = 151/304 (49%), Gaps = 10/304 (3%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTM----KSLRFGRQFQLIEQLANEMVSNEIELDNIT 224
           ++   F+ ++ Q L P +T+ Y   +    KS R     +  EQ+ +E +S      NI 
Sbjct: 392 QAMLVFSKMRQQGLNP-DTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSP----GNIV 446

Query: 225 YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
           Y+++I      + +D+A E    M   G+  D + +++I+D + K G+V E   L++  V
Sbjct: 447 YNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMV 506

Query: 285 ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344
             G KP+ I +S L   +  +G  D    +L  M S+G++P+ V YNTL+    K  +  
Sbjct: 507 RIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRME 566

Query: 345 LARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
            A  LF EM  SG++PD  T   +++   + R    A EL+  + E+   ++   YN +L
Sbjct: 567 DALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIIL 626

Query: 405 NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
           +      L +EA R+F+++ L+D  + +  ++  M+      G  D A +LF  +S  G+
Sbjct: 627 HGLCKNNLTDEALRMFQNLCLTDL-QLETRTFNIMIGALLKVGRNDEAKDLFAALSANGL 685

Query: 465 AINV 468
             +V
Sbjct: 686 VPDV 689



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 122/276 (44%), Gaps = 7/276 (2%)

Query: 241 AIEWFERMYKTG---LMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS- 296
           A+  + RM + G   + P+  TY  ++     +G+++   +     +  G++ D IAF+ 
Sbjct: 72  AVSRYNRMARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTP 131

Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356
           +L  +  +    D +  VL+ M  LG  PN+  YN LL+ +    +   A  L   M + 
Sbjct: 132 LLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDD 191

Query: 357 G--LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
           G    PD  + T +I  + K      A   +  M +     + + YN+++        ++
Sbjct: 192 GGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQAMD 251

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
           +A  +   M + +   P+  +Y ++++ Y S G    AI   ++M   GV  +V+    L
Sbjct: 252 KAMEVLTSM-VKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSL 310

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
           +  L K  R  +  ++F     RG+KP+    G LL
Sbjct: 311 MDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLL 346



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 102/241 (42%), Gaps = 45/241 (18%)

Query: 172 FFFNWIKSQNLF--------PMETIFYNVTMKS-LRFGRQFQLIEQLANEMVSNEIELDN 222
            F  W K++ L          ++TIF+N  + S  + GR  +  E+L + MV   ++ + 
Sbjct: 456 IFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIE-SEKLFDLMVRIGVKPNI 514

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           ITYST+I         DEA +    M   G+ PD VTY+ +++ Y K  ++E+ L L+  
Sbjct: 515 ITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFRE 574

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLE------- 335
             +SG  PD I ++++ +   ++      + +   +   G Q  L  YN +L        
Sbjct: 575 MESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNL 634

Query: 336 ----------------------------AMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
                                       A+ K G+   A+ LF  +  +GL PD +T + 
Sbjct: 635 TDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSL 694

Query: 368 L 368
           +
Sbjct: 695 M 695



 Score = 49.7 bits (117), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 41/189 (21%), Positives = 87/189 (46%), Gaps = 4/189 (2%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
            + +   F  ++S  + P + I YN+ ++ L   R+    ++L   +  +  +L+  TY+
Sbjct: 565 MEDALVLFREMESSGVSP-DIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYN 623

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
            I+    + NL DEA+  F+ +  T L  +  T++ ++    K G+ +E   L+    A+
Sbjct: 624 IILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSAN 683

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM---GKAGKP 343
           G  PD   +S++ +   E G  + +  +   M+  G   N  + N+++  +   G   + 
Sbjct: 684 GLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRA 743

Query: 344 GLARSLFDE 352
           G    + DE
Sbjct: 744 GTYLFMIDE 752



 Score = 39.7 bits (91), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 44/237 (18%), Positives = 97/237 (40%), Gaps = 43/237 (18%)

Query: 177 IKSQNLFPM--------ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           I+S+ LF +          I Y+  +       +     +L   MVS  ++ D +TY+T+
Sbjct: 496 IESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTL 555

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAIL-------------DVYA------- 268
           I    + +  ++A+  F  M  +G+ PD +TY+ IL             ++Y        
Sbjct: 556 INGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGT 615

Query: 269 ---------------KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRY 313
                          K+   +E L +++    +  + +   F+++     + G  D  + 
Sbjct: 616 QLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKD 675

Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK 370
           +   + + G+ P++  Y+ + E + + G       LF  M E+G T + + L ++++
Sbjct: 676 LFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVR 732


>gi|162460542|ref|NP_001105869.1| pentatricopeptide repeat protein [Zea mays]
 gi|95931777|gb|ABF57644.1| pentatricopeptide repeat protein [Zea mays]
          Length = 886

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/359 (24%), Positives = 159/359 (44%), Gaps = 40/359 (11%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           ++ EM S+ I+ +N TYS +I      + F  A   FE M K+GL PD   Y+ +++ + 
Sbjct: 448 ISKEMESHGIKHNNKTYSMLINGFIHLHDFANAFSIFEDMIKSGLQPDRAIYNLLVEAFC 507

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           K G ++  + ++ER      +P    F  + + F  +GD       L  M+  G  P ++
Sbjct: 508 KMGNMDRAIRIFERMQKERMQPSNRTFRPIIEGFAVAGDMKRAFDTLDLMRRSGCAPTVM 567

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            YN L+  + +  +   A S+ D+M  +G+ P+E T T +++ Y  +     A E + ++
Sbjct: 568 TYNALIHGLVRKHQVEKAVSVLDKMSIAGIAPNEHTYTIIMRGYAASGDIGKAFEYFTKI 627

Query: 389 RENKWPMDFILYNTLLNMCADIGLVE---------------------------------- 414
           +E+   +D  +Y TLL  C   G ++                                  
Sbjct: 628 KESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDV 687

Query: 415 -EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTC 473
            EA  L + MK  D   P+ +++T+ +N     G++  A  + +EM+++G+  NV   T 
Sbjct: 688 WEAADLLKQMK-EDGIPPNIHTFTSYINACCKAGDMQRAENVIQEMADVGLKPNVKTFTT 746

Query: 474 LIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGC----LLSVVSLCETSEDVGKVITC 528
           LI+   +    D  ++ F      G+KPD+    C    LLS  ++ E S   G    C
Sbjct: 747 LIKGWARVSLPDRALKCFEEMKSAGLKPDEAAYHCLVTSLLSRATVMEGSTYTGIFSVC 805



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/309 (23%), Positives = 145/309 (46%), Gaps = 14/309 (4%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS------TIITCAKRCNLFDEA 241
           I+ N+     + G      E+L  EM  + I+     Y       T++   K+C +    
Sbjct: 358 IYSNIIHAHCQSG-NMDRAEELVREMEEDGIDAPIDVYHSMMHGYTVVQDEKKCLIV--- 413

Query: 242 IEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKM 301
              FER+ + G  P  ++Y  ++++Y K GKV + +++ +   + G K +   +S+L   
Sbjct: 414 ---FERLKECGFKPTIISYGCLINLYVKVGKVPKAIAISKEMESHGIKHNNKTYSMLING 470

Query: 302 FGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD 361
           F    D+     + ++M   G+QP+  +YN L+EA  K G    A  +F+ M +  + P 
Sbjct: 471 FIHLHDFANAFSIFEDMIKSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMQKERMQPS 530

Query: 362 EKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFE 421
            +T   +I+ +  A   K A +  + MR +      + YN L++       VE+A  + +
Sbjct: 531 NRTFRPIIEGFAVAGDMKRAFDTLDLMRRSGCAPTVMTYNALIHGLVRKHQVEKAVSVLD 590

Query: 422 DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
            M ++    P+ ++YT ++  Y + G++  A E F ++ E G+ ++V     L++   K+
Sbjct: 591 KMSIAGIA-PNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKS 649

Query: 482 RRIDDLVRV 490
            R+   + V
Sbjct: 650 GRMQSALAV 658



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 89/419 (21%), Positives = 172/419 (41%), Gaps = 10/419 (2%)

Query: 127 FARKLNDCDNTEEAFLRAITEIPHQPTRENALLILNSLKFWQKSYF--FFNWIKSQNLFP 184
           F R L       +A + A   IP    RE  L+++   K   K +    F  ++++ + P
Sbjct: 225 FRRVLESRPEDWQAVVSAFERIPKPSRREFGLMVVYYAKRGDKHHARATFENMRARGIEP 284

Query: 185 METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEW 244
              +F ++       G     +     EM S  IE+  +TYS +I+   + N    A   
Sbjct: 285 NAFVFTSLVHAYAVAGDMRGAL-SCVEEMKSEGIEMTVVTYSILISGYGKTNDAQSADNL 343

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
           F+         + + YS I+  + +SG ++    L       G       +  +   +  
Sbjct: 344 FKEAKTKLDNLNGIIYSNIIHAHCQSGNMDRAEELVREMEEDGIDAPIDVYHSMMHGYTV 403

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
             D      V + +K  G +P ++ Y  L+    K GK   A ++  EM   G+  + KT
Sbjct: 404 VQDEKKCLIVFERLKECGFKPTIISYGCLINLYVKVGKVPKAIAISKEMESHGIKHNNKT 463

Query: 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
            + LI  +       +A  ++E M ++    D  +YN L+     +G ++ A R+FE M+
Sbjct: 464 YSMLINGFIHLHDFANAFSIFEDMIKSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMQ 523

Query: 425 LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484
             +  +P N ++  ++  +   G++  A +  + M   G A  VM    LI  L +  ++
Sbjct: 524 -KERMQPSNRTFRPIIEGFAVAGDMKRAFDTLDLMRRSGCAPTVMTYNALIHGLVRKHQV 582

Query: 485 DDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKV---ITCLQQANPKLVAFL 540
           +  V V       G+ P++     ++   +    S D+GK     T ++++  KL  ++
Sbjct: 583 EKAVSVLDKMSIAGIAPNEHTYTIIMRGYA---ASGDIGKAFEYFTKIKESGLKLDVYI 638



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 86/378 (22%), Positives = 155/378 (41%), Gaps = 20/378 (5%)

Query: 242 IEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKM 301
           +  FER+ K    P    +  ++  YAK G      + +E   A G +P+   F+ L   
Sbjct: 240 VSAFERIPK----PSRREFGLMVVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHA 295

Query: 302 FGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD 361
           +  +GD  G    ++EMKS G++  +V Y+ L+   GK      A +LF E        +
Sbjct: 296 YAVAGDMRGALSCVEEMKSEGIEMTVVTYSILISGYGKTNDAQSADNLFKEAKTKLDNLN 355

Query: 362 EKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFE 421
               + +I  + ++     A EL   M E+       +Y+++++    +   ++   +FE
Sbjct: 356 GIIYSNIIHAHCQSGNMDRAEELVREMEEDGIDAPIDVYHSMMHGYTVVQDEKKCLIVFE 415

Query: 422 DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
            +K   + KP   SY  ++N+Y   G V  AI + +EM   G+  N    + LI      
Sbjct: 416 RLKECGF-KPTIISYGCLINLYVKVGKVPKAIAISKEMESHGIKHNNKTYSMLINGFIHL 474

Query: 482 RRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ--ANPKLVAF 539
               +   +F   I  G++PD  +   L+         +   ++   +Q+    P    F
Sbjct: 475 HDFANAFSIFEDMIKSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMQKERMQPSNRTF 534

Query: 540 LNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFC-------NCLIDICRNRNLNERAHEL 592
             +IE  +    ++K  F     DT    RR  C       N LI     ++  E+A  +
Sbjct: 535 RPIIEGFAVA-GDMKRAF-----DTLDLMRRSGCAPTVMTYNALIHGLVRKHQVEKAVSV 588

Query: 593 LYLGTLYGLYPGLHNKTL 610
           L   ++ G+ P  H  T+
Sbjct: 589 LDKMSIAGIAPNEHTYTI 606


>gi|334183592|ref|NP_001185295.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179660|sp|Q9LQ15.1|PPR95_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62914, mitochondrial; Flags: Precursor
 gi|8493579|gb|AAF75802.1|AC011000_5 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats. EST gb|AA728420 comes from this gene
           [Arabidopsis thaliana]
 gi|332195900|gb|AEE34021.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 528

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 147/294 (50%), Gaps = 1/294 (0%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L ++MV    + D +T++T+I      N   EA+   +RM + G  PD VTY A+++   
Sbjct: 170 LVDQMVEMGYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLC 229

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           K G  +  L+L  +  A+  + + + +S +     +    D    +  EM++ GV+PN++
Sbjct: 230 KRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVI 289

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            Y++L+  +   G+   A  L  +M+E  + P+  T +ALI  + K      A +L+E M
Sbjct: 290 TYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEM 349

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
            +     +   Y++L+N    +  + EA+++ E M   D C P+  +Y  ++N +     
Sbjct: 350 IKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKD-CLPNVVTYNTLINGFCKAKR 408

Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           VD  +ELF EMS+ G+  N +  T LI    +AR  D+   VF   +  GV P+
Sbjct: 409 VDKGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPN 462



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 119/254 (46%), Gaps = 1/254 (0%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
            + Y+  + SL   R       L  EM +  +  + ITYS++I+C      + +A     
Sbjct: 253 VVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLS 312

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
            M +  + P+ VT+SA++D + K GK+ +   LYE  +     P+   +S L   F    
Sbjct: 313 DMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLD 372

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
                + +L+ M      PN+V YNTL+    KA +      LF EM + GL  +  T T
Sbjct: 373 RLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYT 432

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
            LI  + +AR   +A  ++++M       + + YN LL+     G + +A  +FE ++ S
Sbjct: 433 TLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRS 492

Query: 427 DYCKPDNYSYTAML 440
              +PD Y+Y  M+
Sbjct: 493 TM-EPDIYTYNIMI 505



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 92/172 (53%), Gaps = 1/172 (0%)

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
           E+L  EM+   I+ +  TYS++I      +   EA +  E M +   +P+ VTY+ +++ 
Sbjct: 343 EKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLING 402

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
           + K+ +V++ + L+      G   + + ++ L   F ++ D D  + V ++M S+GV PN
Sbjct: 403 FCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPN 462

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA-RW 377
           ++ YN LL+ + K GK   A  +F+ +  S + PD  T   +I+   KA +W
Sbjct: 463 ILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKW 514



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 137/291 (47%), Gaps = 11/291 (3%)

Query: 260 YSAILDVYAKSGKVEEVLSLYERGVASGWKPDP--IAFSVLGKMFGESGDYDGIRYVLQE 317
           Y  +L       ++++ + L+  GV +  +P P  I FS L     +   +D +    ++
Sbjct: 46  YREVLRTGLSDIELDDAIGLF--GVMAQSRPFPSIIEFSKLLSAIAKMNKFDLVISFGEK 103

Query: 318 MKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARW 377
           M+ LG+  NL  YN L+    +  +  LA +L  +M++ G  PD  TL +L+  +     
Sbjct: 104 MEILGISHNLYTYNILINCFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNR 163

Query: 378 AKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYT 437
             DA+ L ++M E  +  D + + TL++         EA  L + M +   C+PD  +Y 
Sbjct: 164 ISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNKASEAVALIDRM-VQRGCQPDLVTYG 222

Query: 438 AMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDR 497
           A++N     G+ D A+ L  +M    +  NV+  + +I  L K R  DD + +F    ++
Sbjct: 223 AVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENK 282

Query: 498 GVKPD----DRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIE 544
           GV+P+      L  CL +     + S  +  +I   ++ NP LV F  LI+
Sbjct: 283 GVRPNVITYSSLISCLCNYGRWSDASRLLSDMIE--RKINPNLVTFSALID 331



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/280 (21%), Positives = 133/280 (47%), Gaps = 1/280 (0%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           I +S +++   + N FD  I + E+M   G+  +  TY+ +++ + +  ++   L+L  +
Sbjct: 79  IEFSKLLSAIAKMNKFDLVISFGEKMEILGISHNLYTYNILINCFCRCSRLSLALALLGK 138

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
            +  G++PD +  + L   F           ++ +M  +G +P+ V + TL+  +    K
Sbjct: 139 MMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNK 198

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
              A +L D MV+ G  PD  T  A++    K      AL L  +M   K   + ++Y+T
Sbjct: 199 ASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYST 258

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
           +++        ++A  LF +M+ +   +P+  +Y+++++   + G   +A  L  +M E 
Sbjct: 259 VIDSLCKYRHEDDALNLFTEME-NKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIER 317

Query: 463 GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            +  N++  + LI    K  ++    +++   I R + P+
Sbjct: 318 KINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPN 357



 Score = 62.4 bits (150), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 45/201 (22%), Positives = 94/201 (46%), Gaps = 1/201 (0%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           +L ++M+  +I  + +T+S +I    +     +A + +E M K  + P+  TYS++++ +
Sbjct: 309 RLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGF 368

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
               ++ E   + E  +     P+ + ++ L   F ++   D    + +EM   G+  N 
Sbjct: 369 CMLDRLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNT 428

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
           V Y TL+    +A     A+ +F +MV  G+ P+  T   L+    K      A+ ++E 
Sbjct: 429 VTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEY 488

Query: 388 MRENKWPMDFILYNTLL-NMC 407
           ++ +    D   YN ++  MC
Sbjct: 489 LQRSTMEPDIYTYNIMIEGMC 509


>gi|125591609|gb|EAZ31959.1| hypothetical protein OsJ_16132 [Oryza sativa Japonica Group]
          Length = 756

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 124/515 (24%), Positives = 219/515 (42%), Gaps = 23/515 (4%)

Query: 156 NALL-ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRF-GRQFQLIEQLANEM 213
           NA+L  L +    + ++F F  ++      +ET  YN  +  L   G  F+  E L +EM
Sbjct: 151 NAVLSALATHGLLEPAFFCFKRLRDAGFRVLETHAYNALLSLLLTRGLAFKAFEVL-DEM 209

Query: 214 VSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKT-GL-MPDEVTYSAILDVYAKSG 271
            S+   LD  TY  ++    R    D A + F+ M K  G+       Y  ++DV AK+G
Sbjct: 210 SSSGCALDEGTYELVVPALARAGRIDAARKMFDEMRKREGIGRASAGMYGVLVDVLAKAG 269

Query: 272 KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYN 331
           +++  + +Y   VA G +  P   + + +    +G  D    + +EM+  G++P+  +Y 
Sbjct: 270 RLDAAMGMYREMVAVGHRASPAVSTAVVEGLVRAGKLDAGMELWEEMRRGGLRPSFGLYT 329

Query: 332 TLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN 391
            ++EA  ++G+  +A  LF +M +SG  P   T   L++++  A     A+ L+  M   
Sbjct: 330 MVVEANARSGRLDVATQLFGDMEKSGFFPTPATYACLVEMHASAGQVDAAMRLYHSMANA 389

Query: 392 KWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDN 451
                   +  LL M A+  +++ A ++  +MK S +  P   + + +L IY   G+ + 
Sbjct: 390 GQRPGLSTFTALLMMLANKRMLDLAAKVLLEMKASGF--PIEVTASDLLMIYIKEGSTEL 447

Query: 452 AIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
           A+     M   G+  N      L +   K    D    +    +    K D  L   +L+
Sbjct: 448 ALRWLRFMGSAGIRTNNFIIRQLFESCMKTGLYDSARPLLETYVAGAAKVDLILYTSILA 507

Query: 512 VVSLCETSEDVGKVITCLQQANPKLVAFLNLI-----EDNSTGFENIKEEFRNVIKDTEV 566
            +  C+       ++  L  +  K   F+  +     +        ++E F+ +  D E 
Sbjct: 508 HLVRCQDEGRERAIMDILSVSKHKAHDFMCGLFTGPEQRKKPVLSFVREFFQGIDYDNEE 567

Query: 567 DARRPFCNCLIDICRNRNLNERAH---ELLYLGTLYGLYPGLHNKTLDE---WSLDVRSL 620
            A R F N L++         RA    ++ Y   L+           D+   WSLDVR+L
Sbjct: 568 SAARYFVNVLLNYLVLMGQMNRARCIWKVAYENKLFA-----KAIVFDQHIAWSLDVRNL 622

Query: 621 SVGAAQTALEEWMWTLAKIVLREEVLPQLFLAETG 655
           SVGAA  A    +    K +L   V+P+     TG
Sbjct: 623 SVGAALVATVHTLHRFRKRMLYYGVVPRRIKLVTG 657


>gi|115445137|ref|NP_001046348.1| Os02g0226900 [Oryza sativa Japonica Group]
 gi|49388538|dbj|BAD25660.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|49388672|dbj|BAD25856.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113535879|dbj|BAF08262.1| Os02g0226900 [Oryza sativa Japonica Group]
          Length = 637

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 95/366 (25%), Positives = 169/366 (46%), Gaps = 34/366 (9%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           +++  F  +K ++  P    +  +   S + GR  + +    +EMVS    L+ I ++TI
Sbjct: 239 QAFQVFEDMKQKHCVPDAYTYTILIRMSGKAGRTSKFL-SFFDEMVSKGCVLNLIAFNTI 297

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVE---EVL-------- 277
           I    +  + D+ I    +M +    P++ TYS  LD+ A  G++    EVL        
Sbjct: 298 IEALGKNKMVDKVIFVLSKMVENDCQPNQFTYSITLDILATEGQLHRLNEVLDICSRFMN 357

Query: 278 -SLYERGVASGWKPDPI--AFSVLGKMFG--ESGDYDGIRYVLQ---------------- 316
            S+Y   V S  K      A +V  +M+   E GD D    +L+                
Sbjct: 358 RSIYSYLVKSLCKSGHASEAHNVFCRMWNSHEKGDRDAFVSMLEVLCNAEKTLEAIDLLH 417

Query: 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
            M   G+  ++ +YN +  A+GK  +     +LFD+M  +G+ PD  T   +I  YG+  
Sbjct: 418 MMPEKGIVTDVGMYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVG 477

Query: 377 WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY 436
               A EL+E M  +    D + YN+L+N     G ++EA  LF++M+   Y  PD ++Y
Sbjct: 478 LVDKASELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGY-DPDVFTY 536

Query: 437 TAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496
           + ++  +G    V+ A  LF+EM   G   N++    L+ CL +  + ++  +++     
Sbjct: 537 SILIECFGKSNKVEMACSLFDEMISEGCTPNIVTYNILLDCLERRGKTEEAHKLYETMKQ 596

Query: 497 RGVKPD 502
           +G+ PD
Sbjct: 597 QGLIPD 602



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 98/405 (24%), Positives = 177/405 (43%), Gaps = 72/405 (17%)

Query: 194 MKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGL 253
           ++S    + FQ+ E    EM     +LD   Y+ ++    +  + D+A + FE M +   
Sbjct: 197 LRSREVSKGFQVYE----EMRRKGYKLDIFAYNMLLDALAKAGMVDQAFQVFEDMKQKHC 252

Query: 254 MPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRY 313
           +PD  TY+ ++ +  K+G+  + LS ++  V+ G   + IAF+ + +  G++   D + +
Sbjct: 253 VPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEALGKNKMVDKVIF 312

Query: 314 VLQEMKSLGVQPNLV--------------------------------VYNTLLEAMGKAG 341
           VL +M     QPN                                  +Y+ L++++ K+G
Sbjct: 313 VLSKMVENDCQPNQFTYSITLDILATEGQLHRLNEVLDICSRFMNRSIYSYLVKSLCKSG 372

Query: 342 KPGLARSLFDEMVESGLTPD--------------EKTLTAL--------------IKIY- 372
               A ++F  M  S    D              EKTL A+              + +Y 
Sbjct: 373 HASEAHNVFCRMWNSHEKGDRDAFVSMLEVLCNAEKTLEAIDLLHMMPEKGIVTDVGMYN 432

Query: 373 ------GKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
                 GK +       L+++M+ N    D   YN +++    +GLV++A  LFE M+ S
Sbjct: 433 MVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEAS 492

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
             CKPD  +Y +++N  G  G++D A  LF+EM E G   +V   + LI+C GK+ +++ 
Sbjct: 493 S-CKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEM 551

Query: 487 LVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ 531
              +F   I  G  P+      LL  +     +E+  K+   ++Q
Sbjct: 552 ACSLFDEMISEGCTPNIVTYNILLDCLERRGKTEEAHKLYETMKQ 596



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 100/188 (53%)

Query: 189 FYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERM 248
            YN+   +L   +Q   I  L ++M +N I  D  TY+ +I+   R  L D+A E FE M
Sbjct: 430 MYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVM 489

Query: 249 YKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY 308
             +   PD VTY+++++   K G ++E   L++     G+ PD   +S+L + FG+S   
Sbjct: 490 EASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKV 549

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
           +    +  EM S G  PN+V YN LL+ + + GK   A  L++ M + GL PD  T + L
Sbjct: 550 EMACSLFDEMISEGCTPNIVTYNILLDCLERRGKTEEAHKLYETMKQQGLIPDSITYSIL 609

Query: 369 IKIYGKAR 376
            ++  +++
Sbjct: 610 ERLESRSQ 617



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 87/159 (54%)

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
           F++M   G++PD  TY+ ++  Y + G V++   L+E   AS  KPD + ++ L    G+
Sbjct: 451 FDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTYNSLINCLGK 510

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
            GD D    + +EM+  G  P++  Y+ L+E  GK+ K  +A SLFDEM+  G TP+  T
Sbjct: 511 HGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIVT 570

Query: 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
              L+    +    ++A +L+E M++     D I Y+ L
Sbjct: 571 YNILLDCLERRGKTEEAHKLYETMKQQGLIPDSITYSIL 609



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 101/200 (50%), Gaps = 1/200 (0%)

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           EAI+    M + G++ D   Y+ +     K  +V  + +L+++   +G  PD   ++++ 
Sbjct: 411 EAIDLLHMMPEKGIVTDVGMYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMI 470

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
             +G  G  D    + + M++   +P++V YN+L+  +GK G    A  LF EM E G  
Sbjct: 471 SSYGRVGLVDKASELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYD 530

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
           PD  T + LI+ +GK+   + A  L++ M       + + YN LL+     G  EEA +L
Sbjct: 531 PDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIVTYNILLDCLERRGKTEEAHKL 590

Query: 420 FEDMKLSDYCKPDNYSYTAM 439
           +E MK      PD+ +Y+ +
Sbjct: 591 YETMKQQGLI-PDSITYSIL 609



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 87/352 (24%), Positives = 142/352 (40%), Gaps = 68/352 (19%)

Query: 218 IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL 277
           + L   TY  I+    R     +  + +E M + G   D   Y+ +LD  AK+G V++  
Sbjct: 182 LRLSGYTYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQAF 241

Query: 278 SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
            ++E        PD   +++L +M G++G          EM S G   NL+ +NT++EA+
Sbjct: 242 QVFEDMKQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEAL 301

Query: 338 GKAGKPGLARSLFDEMVESGLTPDEKTLTA------------------------------ 367
           GK         +  +MVE+   P++ T +                               
Sbjct: 302 GKNKMVDKVIFVLSKMVENDCQPNQFTYSITLDILATEGQLHRLNEVLDICSRFMNRSIY 361

Query: 368 --LIKIYGKARWAKDALELWERM--------RENKWPMDFILYNT--------LLNMCAD 409
             L+K   K+  A +A  ++ RM        R+    M  +L N         LL+M  +
Sbjct: 362 SYLVKSLCKSGHASEAHNVFCRMWNSHEKGDRDAFVSMLEVLCNAEKTLEAIDLLHMMPE 421

Query: 410 IGLVEEA-------------------ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
            G+V +                      LF+ MK ++   PD ++Y  M++ YG  G VD
Sbjct: 422 KGIVTDVGMYNMVFSALGKLKQVSFISNLFDKMK-TNGIIPDVFTYNIMISSYGRVGLVD 480

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            A ELFE M       +V+    LI CLGK   +D+   +F    ++G  PD
Sbjct: 481 KASELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPD 532



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 52/116 (44%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + YN  +  L           L  EM     + D  TYS +I C  + N  + A   F
Sbjct: 497 DVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLF 556

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKM 301
           + M   G  P+ VTY+ +LD   + GK EE   LYE     G  PD I +S+L ++
Sbjct: 557 DEMISEGCTPNIVTYNILLDCLERRGKTEEAHKLYETMKQQGLIPDSITYSILERL 612



 Score = 46.2 bits (108), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 27/125 (21%), Positives = 64/125 (51%), Gaps = 4/125 (3%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           +++  F  ++ +   P +   Y++ ++      + ++   L +EM+S     + +TY+ +
Sbjct: 516 EAHMLFKEMQEKGYDP-DVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIVTYNIL 574

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
           + C +R    +EA + +E M + GL+PD +TYS +  + ++S   +  + + +    SGW
Sbjct: 575 LDCLERRGKTEEAHKLYETMKQQGLIPDSITYSILERLESRS---QRTVRIRKPTRISGW 631

Query: 289 KPDPI 293
              P+
Sbjct: 632 VVSPL 636


>gi|147859909|emb|CAN83144.1| hypothetical protein VITISV_040783 [Vitis vinifera]
          Length = 724

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 155/331 (46%), Gaps = 10/331 (3%)

Query: 216 NEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEE 275
           N +     T   +IT        +EA   FE + + GLMP    Y+A+L  Y K+G +++
Sbjct: 356 NGLSPKTATLVAVITALGNAGRTEEAEAIFEELKEGGLMPRTRAYNALLKGYVKTGSLKD 415

Query: 276 VLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLE 335
             S+      SG+ PD   +S+L   +  +G ++  R VL+EM++ GV+PN  V++ +L 
Sbjct: 416 AESIVSEMERSGFSPDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRILA 475

Query: 336 AMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPM 395
           +    GK   +  +  EM  SG++PD      +I  +GK      AL  ++RMR      
Sbjct: 476 SYRDRGKWQKSFQVLREMRNSGVSPDRHFYNVMIDTFGKCNCLDHALATFDRMRMEGVQP 535

Query: 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIEL 455
           D + +NTL++     G   +AE LFE M+ S  C P   +Y  M+N +G     ++   L
Sbjct: 536 DAVTWNTLIDCHCKSGHHNKAEELFEAMQESG-CSPCTTTYNIMINSFGEQERWEDVKTL 594

Query: 456 FEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSL 515
             +M   G+  NV+  T     LG + +  +  RV       G+KP   +   L++    
Sbjct: 595 LGKMQSQGLLANVVTYT----TLGLSEQAINAFRVMRAD---GLKPSVLVLNSLINAFGE 647

Query: 516 CETSEDVGKVITCLQQAN--PKLVAFLNLIE 544
                +   V+  +++ +  P +V +  L++
Sbjct: 648 DRRDAEAFSVLQYMKENDLKPDVVTYTTLMK 678



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 145/344 (42%), Gaps = 9/344 (2%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           F  +K   L P  T  YN  +K        +  E + +EM  +    D  TYS +I    
Sbjct: 385 FEELKEGGLMP-RTRAYNALLKGYVKTGSLKDAESIVSEMERSGFSPDEHTYSLLIDAYA 443

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
               ++ A    + M  +G+ P+   +S IL  Y   GK ++   +      SG  PD  
Sbjct: 444 NAGRWESARIVLKEMEASGVRPNSYVFSRILASYRDRGKWQKSFQVLREMRNSGVSPDRH 503

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
            ++V+   FG+    D        M+  GVQP+ V +NTL++   K+G    A  LF+ M
Sbjct: 504 FYNVMIDTFGKCNCLDHALATFDRMRMEGVQPDAVTWNTLIDCHCKSGHHNKAEELFEAM 563

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
            ESG +P   T   +I  +G+    +D   L  +M+      + + Y TL       GL 
Sbjct: 564 QESGCSPCTTTYNIMINSFGEQERWEDVKTLLGKMQSQGLLANVVTYTTL-------GLS 616

Query: 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTC 473
           E+A   F  M+ +D  KP      +++N +G       A  + + M E  +  +V+  T 
Sbjct: 617 EQAINAFRVMR-ADGLKPSVLVLNSLINAFGEDRRDAEAFSVLQYMKENDLKPDVVTYTT 675

Query: 474 LIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCE 517
           L++ L +  + D +  V+      G  PD +    L S +   E
Sbjct: 676 LMKALIRVEKFDKVPAVYEEMTLSGCTPDRKARAMLRSALRYME 719



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 152/335 (45%), Gaps = 8/335 (2%)

Query: 170 SYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTII 229
           +Y    W++  NL     + Y++ + +L  GR  +L E     ++S    L  +TY+ +I
Sbjct: 208 AYSLVTWLERHNLCFSYELLYSILIHAL--GRSEKLYEAF---LLSQRQTLTPLTYNALI 262

Query: 230 TCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL--SLYERGVASG 287
               R +  ++A+    RM + G   D V YS I+    ++ K +  +   +Y    +  
Sbjct: 263 GACARNDDLEKALNLMSRMRRDGYPSDFVNYSFIIQSLTRTNKSDSSMLQKIYAEIESDK 322

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
            + D    + +   F +SGD +     L  ++  G+ P       ++ A+G AG+   A 
Sbjct: 323 IELDGQLLNDIIVGFAKSGDVNRAMSFLAMVQGNGLSPKTATLVAVITALGNAGRTEEAE 382

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
           ++F+E+ E GL P  +   AL+K Y K    KDA  +   M  + +  D   Y+ L++  
Sbjct: 383 AIFEELKEGGLMPRTRAYNALLKGYVKTGSLKDAESIVSEMERSGFSPDEHTYSLLIDAY 442

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
           A+ G  E A  + ++M+ S   +P++Y ++ +L  Y   G    + ++  EM   GV+ +
Sbjct: 443 ANAGRWESARIVLKEMEASG-VRPNSYVFSRILASYRDRGKWQKSFQVLREMRNSGVSPD 501

Query: 468 VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
                 +I   GK   +D  +  F      GV+PD
Sbjct: 502 RHFYNVMIDTFGKCNCLDHALATFDRMRMEGVQPD 536


>gi|115461911|ref|NP_001054555.1| Os05g0132000 [Oryza sativa Japonica Group]
 gi|52353663|gb|AAU44229.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113578106|dbj|BAF16469.1| Os05g0132000 [Oryza sativa Japonica Group]
 gi|125550727|gb|EAY96436.1| hypothetical protein OsI_18334 [Oryza sativa Indica Group]
          Length = 637

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 147/313 (46%), Gaps = 1/313 (0%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN  + +L    +   +  + NEMV   ++ + +TY+TI+    +      A     RM 
Sbjct: 225 YNAVVHALCGEFRMWEVFSVVNEMVQRGLQPNVVTYTTIVDAFCKARELRMACAILARMV 284

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
             G  P+ +T++A++  + + GKV + LS++   V  GW P  I+++VL +     GD  
Sbjct: 285 SMGCTPNVLTFTALVKGFFEDGKVHDALSMWHWMVDEGWAPSTISYNVLIRGLCCIGDLK 344

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
           G       MK   + PN   Y+TL++    AG    A  +++EM  SG  P+    T +I
Sbjct: 345 GALDFFNSMKRNALLPNATTYSTLVDGFSNAGDLDGAMLIWNEMKSSGCKPNVVVYTNMI 404

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
            +  K      A  L ++M  +  P + + +NTL+    D G V  A  +F  M+  + C
Sbjct: 405 DVLCKKMMFDQAESLIDKMLMDNCPPNTVTFNTLIGRLCDCGRVGRALNVFHGMR-RNGC 463

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
            P++ +Y  +L+     GN  +A  +  EM   G  ++++    +I CL +       + 
Sbjct: 464 HPNDRTYNELLHGLFREGNHKDAFAMVIEMLNNGFELSLVTYNTVINCLCQMCMRKHAML 523

Query: 490 VFGVSIDRGVKPD 502
           + G  + +G++PD
Sbjct: 524 LLGRMMVQGIQPD 536



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 145/297 (48%), Gaps = 8/297 (2%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN  + +L        +  + + M    ++ +  TY+ +I    + +  D A +  + M 
Sbjct: 125 YNHLLDALLRENMVGAVVPVYDNMRKAGVDPNVYTYNLLIRALCQNDRVDAARKMLDEMS 184

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAF-SVLGKMFGESGDY 308
           + G  PDEV++  I+    K G+VEE      RG  +   P   ++ +V+  + GE   +
Sbjct: 185 RKGCHPDEVSHGTIVSGMCKLGRVEEA-----RGFLAETVPVQASYNAVVHALCGEFRMW 239

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
           + +  V+ EM   G+QPN+V Y T+++A  KA +  +A ++   MV  G TP+  T TAL
Sbjct: 240 E-VFSVVNEMVQRGLQPNVVTYTTIVDAFCKARELRMACAILARMVSMGCTPNVLTFTAL 298

Query: 369 IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428
           +K + +     DAL +W  M +  W    I YN L+     IG ++ A   F  MK  + 
Sbjct: 299 VKGFFEDGKVHDALSMWHWMVDEGWAPSTISYNVLIRGLCCIGDLKGALDFFNSMK-RNA 357

Query: 429 CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
             P+  +Y+ +++ + + G++D A+ ++ EM   G   NV+  T +I  L K    D
Sbjct: 358 LLPNATTYSTLVDGFSNAGDLDGAMLIWNEMKSSGCKPNVVVYTNMIDVLCKKMMFD 414



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 96/416 (23%), Positives = 177/416 (42%), Gaps = 42/416 (10%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN+ +++L    +     ++ +EM       D +++ TI++   +    +EA     R +
Sbjct: 160 YNLLIRALCQNDRVDAARKMLDEMSRKGCHPDEVSHGTIVSGMCKLGRVEEA-----RGF 214

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
               +P + +Y+A++       ++ EV S+    V  G +P+ + ++ +   F ++ +  
Sbjct: 215 LAETVPVQASYNAVVHALCGEFRMWEVFSVVNEMVQRGLQPNVVTYTTIVDAFCKARELR 274

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               +L  M S+G  PN++ +  L++   + GK   A S++  MV+ G  P   +   LI
Sbjct: 275 MACAILARMVSMGCTPNVLTFTALVKGFFEDGKVHDALSMWHWMVDEGWAPSTISYNVLI 334

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
           +        K AL+ +  M+ N    +   Y+TL++  ++ G ++ A  ++ +MK S  C
Sbjct: 335 RGLCCIGDLKGALDFFNSMKRNALLPNATTYSTLVDGFSNAGDLDGAMLIWNEMK-SSGC 393

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
           KP+   YT M+++       D A  L ++M       N +    LI  L    R+   + 
Sbjct: 394 KPNVVVYTNMIDVLCKKMMFDQAESLIDKMLMDNCPPNTVTFNTLIGRLCDCGRVGRALN 453

Query: 490 VFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTG 549
           VF      G  P+DR    LL  +                ++ N K  AF  +IE  + G
Sbjct: 454 VFHGMRRNGCHPNDRTYNELLHGL---------------FREGNHK-DAFAMVIEMLNNG 497

Query: 550 FENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLY--GLYP 603
           FE     +  VI            NCL  +C       R H +L LG +   G+ P
Sbjct: 498 FELSLVTYNTVI------------NCLCQMCM------RKHAMLLLGRMMVQGIQP 535



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 65/290 (22%), Positives = 121/290 (41%), Gaps = 4/290 (1%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           FFN +K   L P  T  Y+  +              + NEM S+  + + + Y+ +I   
Sbjct: 349 FFNSMKRNALLPNATT-YSTLVDGFSNAGDLDGAMLIWNEMKSSGCKPNVVVYTNMIDVL 407

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +  +FD+A    ++M      P+ VT++ ++      G+V   L+++     +G  P+ 
Sbjct: 408 CKKMMFDQAESLIDKMLMDNCPPNTVTFNTLIGRLCDCGRVGRALNVFHGMRRNGCHPND 467

Query: 293 IAFS-VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
             ++ +L  +F E    D    V+ EM + G + +LV YNT++  + +      A  L  
Sbjct: 468 RTYNELLHGLFREGNHKDAFAMVI-EMLNNGFELSLVTYNTVINCLCQMCMRKHAMLLLG 526

Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411
            M+  G+ PD  T  A+I  Y K      A  L  +M     P + + Y  L++   + G
Sbjct: 527 RMMVQGIQPDAFTFNAIIHAYCKEGKVSIAACLLGQMNAVNCPRNVVAYTILISELCNQG 586

Query: 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461
            +  A      M     C P+  ++  ++    +       I LF+ + E
Sbjct: 587 KLSNAMVYLLKMLYEGIC-PNEATWNVLVRAIFTNIGTIGPIHLFKYIVE 635



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/239 (20%), Positives = 91/239 (38%), Gaps = 42/239 (17%)

Query: 300 KMFGESGDYDGIRYVLQEMKSLGV------------------------------------ 323
           +    +GD DG++Y LQEM+  GV                                    
Sbjct: 59  RRLAAAGDVDGVQYALQEMRLRGVACTEDALVAAIGAFARAGSADRALKTFYRASDLGCR 118

Query: 324 QPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALE 383
            P + VYN LL+A+ +    G    ++D M ++G+ P+  T   LI+   +      A +
Sbjct: 119 DPGVRVYNHLLDALLRENMVGAVVPVYDNMRKAGVDPNVYTYNLLIRALCQNDRVDAARK 178

Query: 384 LWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIY 443
           + + M       D + + T+++    +G VEEA     +        P   SY A+++  
Sbjct: 179 MLDEMSRKGCHPDEVSHGTIVSGMCKLGRVEEARGFLAET------VPVQASYNAVVHAL 232

Query: 444 GSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
                +     +  EM + G+  NV+  T ++    KAR +     +    +  G  P+
Sbjct: 233 CGEFRMWEVFSVVNEMVQRGLQPNVVTYTTIVDAFCKARELRMACAILARMVSMGCTPN 291



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/262 (20%), Positives = 109/262 (41%), Gaps = 15/262 (5%)

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWK-PDPIAFSVLGKMFG 303
            + M   G+   E    A +  +A++G  +  L  + R    G + P    ++ L     
Sbjct: 74  LQEMRLRGVACTEDALVAAIGAFARAGSADRALKTFYRASDLGCRDPGVRVYNHLLDALL 133

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE- 362
                  +  V   M+  GV PN+  YN L+ A+ +  +   AR + DEM   G  PDE 
Sbjct: 134 RENMVGAVVPVYDNMRKAGVDPNVYTYNLLIRALCQNDRVDAARKMLDEMSRKGCHPDEV 193

Query: 363 --KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN-MCADIGLVEEAERL 419
              T+ + +   G+   A+  L     ++ +        YN +++ +C +  + E    +
Sbjct: 194 SHGTIVSGMCKLGRVEEARGFLAETVPVQAS--------YNAVVHALCGEFRMWEVFSVV 245

Query: 420 FEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479
            E ++     +P+  +YT +++ +     +  A  +   M  +G   NV+  T L++   
Sbjct: 246 NEMVQRG--LQPNVVTYTTIVDAFCKARELRMACAILARMVSMGCTPNVLTFTALVKGFF 303

Query: 480 KARRIDDLVRVFGVSIDRGVKP 501
           +  ++ D + ++   +D G  P
Sbjct: 304 EDGKVHDALSMWHWMVDEGWAP 325


>gi|38344241|emb|CAE02059.2| OJ991113_30.18 [Oryza sativa Japonica Group]
          Length = 736

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/387 (23%), Positives = 180/387 (46%), Gaps = 29/387 (7%)

Query: 184 PMETIFYNVTMKSLRFGRQ-------FQLIEQLANEMVSNEIELDNITYSTIITCAKRCN 236
           P   + YN+ + S+  G++         L E++  EM++    L+ +  +    C     
Sbjct: 144 PPGYVVYNIFIGSI-CGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVG 202

Query: 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS 296
            FD+A +  + M + G +PD  TYS ++     + KVE+   L++     G  PD   ++
Sbjct: 203 KFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYT 262

Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356
           +L   F ++G  +  +++ +EM+S+G  P +V Y  L+ A  KA +   A  +F  MV++
Sbjct: 263 ILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDA 322

Query: 357 GLTPDEKTLTALIKIYGKARWAKDALELWERM-----------------RENKWPMDFIL 399
           G  P++ T  AL+    KA     A E++ ++                 R    P + + 
Sbjct: 323 GCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAP-NVVT 381

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           Y  L++       V+ A  L + M LS  C+P++  Y A+++ +   G +D+A E+F +M
Sbjct: 382 YGALVDGLCKAHKVDHAHELLDAM-LSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQM 440

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETS 519
           ++ G   +V   T LI  + K  R+D  ++V    +     P+      ++  +     S
Sbjct: 441 TKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGES 500

Query: 520 EDVGKVITCLQQ--ANPKLVAFLNLIE 544
           E   K+++ +++   +P +V +  LI+
Sbjct: 501 EKALKLLSLMEEKGCSPNVVTYTALID 527



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/311 (28%), Positives = 144/311 (46%), Gaps = 19/311 (6%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  EM    +  D  TY+ +I    +  L ++A   FE M   G  P  VTY+A++  Y 
Sbjct: 245 LFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYL 304

Query: 269 KSGKVEEVLSLYERGVASGWKPDPI-----------------AFSVLGKMFGESGDYDGI 311
           K+ +V +   ++ R V +G +P+ +                 AF V  K+ G S   D  
Sbjct: 305 KAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSD 364

Query: 312 RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371
            Y   E +   + PN+V Y  L++ + KA K   A  L D M+ SG  P+     ALI  
Sbjct: 365 FYFPCEDRHT-LAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDG 423

Query: 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
           + KA     A E++ +M +  +      Y +L++     G ++ A ++   M L D C P
Sbjct: 424 FCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQM-LKDSCTP 482

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           +  +YTAM++     G  + A++L   M E G + NV+  T LI  LGKA +ID  + +F
Sbjct: 483 NVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLF 542

Query: 492 GVSIDRGVKPD 502
                +G  P+
Sbjct: 543 TQMSRKGCSPN 553



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 86/349 (24%), Positives = 156/349 (44%), Gaps = 18/349 (5%)

Query: 170 SYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTII 229
           S F+F       L P   + Y   +  L    +     +L + M+S+  E ++I Y  +I
Sbjct: 363 SDFYFPCEDRHTLAP-NVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALI 421

Query: 230 TCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWK 289
               +    D A E F +M K G +P   TY++++D   K G+++  + +  + +     
Sbjct: 422 DGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCT 481

Query: 290 PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSL 349
           P+ + ++ +       G+ +    +L  M+  G  PN+V Y  L++ +GKAGK  L+  L
Sbjct: 482 PNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDL 541

Query: 350 FDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL----- 404
           F +M   G +P+  T   LI     A     A  L   M++  WP     Y   +     
Sbjct: 542 FTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSK 601

Query: 405 NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
           +  A +G++EE E        S    P    Y  +++ +   G ++ A+EL +EM E+  
Sbjct: 602 SFIASLGILEEME--------SYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPS 653

Query: 465 AI---NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
           ++   N M  + LIQ L  A ++++  R++     RG  P+  +  CL+
Sbjct: 654 SVKTDNDMYAS-LIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLI 701



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/338 (24%), Positives = 153/338 (45%), Gaps = 18/338 (5%)

Query: 189 FYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERM 248
           F +   K  R+     +IE+        + +LD +  + +I+     + FDEA+ +  RM
Sbjct: 16  FAHALCKEGRWADALDMIER-------EDFKLDTVLCTHMISGLMEASYFDEAMSFLHRM 68

Query: 249 YKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY 308
                +P+ VTY  +L  + K  ++     +    +  G  P+P  F+ L   +    DY
Sbjct: 69  RCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDY 128

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAM-GKAGKPG-----LARSLFDEMVESGLTPDE 362
                +L  M + G  P  VVYN  + ++ G+   P      LA  ++ EM+ +    ++
Sbjct: 129 AYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNK 188

Query: 363 KTLTALIK-IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFE 421
             +    + + G  ++ K A +L + M    +  D   Y+ ++        VE+A  LF+
Sbjct: 189 VNVANFARCLCGVGKFDK-AFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQ 247

Query: 422 DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
           +MK+     PD Y+YT +++ +   G ++ A  LFEEM  +G +  V+  T LI    KA
Sbjct: 248 EMKMVGV-TPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKA 306

Query: 482 RRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETS 519
           +++     +F   +D G +P+D   G L  V  LC+  
Sbjct: 307 KQVPQANDIFHRMVDAGCRPNDVTYGAL--VDGLCKAG 342


>gi|357473123|ref|XP_003606846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355507901|gb|AES89043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 624

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 97/397 (24%), Positives = 188/397 (47%), Gaps = 52/397 (13%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           W+K+  F   ++   + P   + YN  +       +F+   ++   M    ++ D  TY+
Sbjct: 233 WKKAKDFIGHMEVYGVKP-NVVTYNTVINGYCLRGKFEAASKIFKTMKDKNLKPDCYTYN 291

Query: 227 TIIT--CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
           + I+  C +R    +EA     ++ ++GL+P+ VTY+A++D     G +++  +  +  +
Sbjct: 292 SFISRLCKER--RIEEASGVLCKLLESGLVPNAVTYNALIDGCCNKGDLDKAFAYRDEMM 349

Query: 285 ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344
             G       +++L          +    +++EM+  GV+P++V YN  +    + G   
Sbjct: 350 NRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDVVTYNIQINGYCRCGNAK 409

Query: 345 LARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER-MRENKWPMDFILYNTL 403
            A SLFDEMVE  + P  +T T+LI ++GK     +A E +++ ++E   P D I++N L
Sbjct: 410 KALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLP-DIIMFNAL 468

Query: 404 LN-MCADIGL----------------------------------VEEAERLFEDMKLSDY 428
           ++  C +  +                                  VEEA++L ++MK    
Sbjct: 469 IDGHCVNGNIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDEMK-ERG 527

Query: 429 CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC---LGKARRID 485
            KPD+ SY  +++ Y   G++ +A+E+F+EM  LG    ++    LIQ    +G+A   +
Sbjct: 528 IKPDHISYNTLISGYSKRGDMKDALEVFDEMLSLGFDPTLLTYNALIQGYSKIGEADHAE 587

Query: 486 DLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDV 522
           +L+R       +G+ PDD      L V+   +T++D+
Sbjct: 588 ELLREMQ---SKGITPDD---STYLYVIEAMKTNDDL 618



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 114/261 (43%), Gaps = 3/261 (1%)

Query: 244 WF--ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKM 301
           WF  E M K  +    VT++ ++++  + GK ++           G KP+ + ++ +   
Sbjct: 202 WFVYEEMVKMNIKSSIVTFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVING 261

Query: 302 FGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD 361
           +   G ++    + + MK   ++P+   YN+ +  + K  +   A  +  +++ESGL P+
Sbjct: 262 YCLRGKFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPN 321

Query: 362 EKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFE 421
             T  ALI           A    + M           YN L++       +EEAE + +
Sbjct: 322 AVTYNALIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIK 381

Query: 422 DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
           +M+     +PD  +Y   +N Y   GN   A+ LF+EM E  +   V   T LI   GK 
Sbjct: 382 EMR-EKGVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKR 440

Query: 482 RRIDDLVRVFGVSIDRGVKPD 502
            R+ +    F  SI  G+ PD
Sbjct: 441 NRMSEAEEKFKKSIKEGMLPD 461


>gi|293335157|ref|NP_001169529.1| uncharacterized protein LOC100383403 [Zea mays]
 gi|224029903|gb|ACN34027.1| unknown [Zea mays]
 gi|414887232|tpg|DAA63246.1| TPA: hypothetical protein ZEAMMB73_160132 [Zea mays]
          Length = 819

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 97/411 (23%), Positives = 181/411 (44%), Gaps = 43/411 (10%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           P + T  N +    +   W+K+      +    + P + I +N+ + + + G Q+     
Sbjct: 221 PSRTTYNNVINACGAAGNWKKALELCKKMTENGVGP-DLITHNIVLSAFKNGAQYSKAIA 279

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY--KTGLMPDEVTYSAILDV 266
               M S+++  D  T + +I C  +  L+ EAIE F  M   +T   PD VTY++I+  
Sbjct: 280 YFEIMKSSKVAPDTCTMNIVIHCLVKIGLYGEAIELFNSMRERRTTCHPDVVTYTSIMYS 339

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
           Y+  G+ E   ++++  VA G +P+ ++++ L   +   G +       + +K  G++P+
Sbjct: 340 YSVCGQAENCKAVFDIMVAEGVRPNIVSYNALLGAYASHGMHTEALETFKLLKQNGLRPD 399

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
           +V Y +LL A G++ +P  AR +F+EM ++   P++ +  ALI  YG A   K+A+ L  
Sbjct: 400 IVSYTSLLNAYGRSAQPEKAREVFNEMRKNACKPNKVSYNALIDAYGSAGMLKEAISLLH 459

Query: 387 RMRENKWPMDFILYNTLLNMCA--------DIGLVEEAER------------LFEDMKLS 426
            M ++    D I  +TLL  C         DI L     R            +   + L 
Sbjct: 460 EMEQDGIQPDVISISTLLTACGRCKQLTKIDIILAAAKSRGIQLNTVAYNSGIGSYLSLG 519

Query: 427 DY--------------CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
           DY               KPD  +Y  +++     G    +++ FE+M +L + +     +
Sbjct: 520 DYKKALVLYTSMRAGNVKPDAVTYNILISGSCKLGRYVESLKFFEDMLDLNIHLTKEVYS 579

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVG 523
            +I    K  ++ +    F    + G  PD      +L+  +L +   D G
Sbjct: 580 SVICSYVKQGKLTEAASTFNSMKETGCFPD------VLTYTTLIKAYSDDG 624



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 80/370 (21%), Positives = 156/370 (42%), Gaps = 38/370 (10%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           + +   F W+K+Q  +      Y + ++      +      L  EM     + +  TY++
Sbjct: 134 KHAVHVFRWMKNQENYCARNDIYGMMIRLHARHNKVDQARGLFFEMQEWRCKPNTDTYNS 193

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           +I    R   +  AI   + M +  + P   TY+ +++    +G  ++ L L ++   +G
Sbjct: 194 LIHAHARAGQWCWAINIMDDMQRAAIPPSRTTYNNVINACGAAGNWKKALELCKKMTENG 253

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA- 346
             PD I  +++   F     Y       + MKS  V P+    N ++  + K G  G A 
Sbjct: 254 VGPDLITHNIVLSAFKNGAQYSKAIAYFEIMKSSKVAPDTCTMNIVIHCLVKIGLYGEAI 313

Query: 347 ------------------------------------RSLFDEMVESGLTPDEKTLTALIK 370
                                               +++FD MV  G+ P+  +  AL+ 
Sbjct: 314 ELFNSMRERRTTCHPDVVTYTSIMYSYSVCGQAENCKAVFDIMVAEGVRPNIVSYNALLG 373

Query: 371 IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCK 430
            Y       +ALE ++ +++N    D + Y +LLN        E+A  +F +M+  + CK
Sbjct: 374 AYASHGMHTEALETFKLLKQNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNEMR-KNACK 432

Query: 431 PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRV 490
           P+  SY A+++ YGS G +  AI L  EM + G+  +V+  + L+   G+ +++  +  +
Sbjct: 433 PNKVSYNALIDAYGSAGMLKEAISLLHEMEQDGIQPDVISISTLLTACGRCKQLTKIDII 492

Query: 491 FGVSIDRGVK 500
              +  RG++
Sbjct: 493 LAAAKSRGIQ 502



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 131/279 (46%), Gaps = 8/279 (2%)

Query: 203 FQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSA 262
           F+L++Q       N +  D ++Y++++    R    ++A E F  M K    P++V+Y+A
Sbjct: 388 FKLLKQ-------NGLRPDIVSYTSLLNAYGRSAQPEKAREVFNEMRKNACKPNKVSYNA 440

Query: 263 ILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG 322
           ++D Y  +G ++E +SL       G +PD I+ S L    G       I  +L   KS G
Sbjct: 441 LIDAYGSAGMLKEAISLLHEMEQDGIQPDVISISTLLTACGRCKQLTKIDIILAAAKSRG 500

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382
           +Q N V YN+ + +    G    A  L+  M    + PD  T   LI    K     ++L
Sbjct: 501 IQLNTVAYNSGIGSYLSLGDYKKALVLYTSMRAGNVKPDAVTYNILISGSCKLGRYVESL 560

Query: 383 ELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNI 442
           + +E M +    +   +Y++++      G + EA   F  MK +  C PD  +YT ++  
Sbjct: 561 KFFEDMLDLNIHLTKEVYSSVICSYVKQGKLTEAASTFNSMKETG-CFPDVLTYTTLIKA 619

Query: 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
           Y   G+   A +LF+EM   G   + + C+ L++ L K 
Sbjct: 620 YSDDGSWRRAWDLFKEMENNGTQPDAIVCSSLMEALNKG 658



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/281 (24%), Positives = 130/281 (46%), Gaps = 3/281 (1%)

Query: 185 METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEW 244
           + T+ YN  + S      ++    L   M +  ++ D +TY+ +I+ + +   + E++++
Sbjct: 503 LNTVAYNSGIGSYLSLGDYKKALVLYTSMRAGNVKPDAVTYNILISGSCKLGRYVESLKF 562

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
           FE M    +   +  YS+++  Y K GK+ E  S +     +G  PD + ++ L K + +
Sbjct: 563 FEDMLDLNIHLTKEVYSSVICSYVKQGKLTEAASTFNSMKETGCFPDVLTYTTLIKAYSD 622

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
            G +     + +EM++ G QP+ +V ++L+EA+ K G+P     L + M +  +  ++K 
Sbjct: 623 DGSWRRAWDLFKEMENNGTQPDAIVCSSLMEALNKGGQPERVLQLIEFMKQKKIQLNQKA 682

Query: 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
              +I      R  K A ++ E +  +   + F   N +LN     G  E   +LF  M 
Sbjct: 683 YFEIISSCTMLRDWKTASQIIEHLDSSLSSISFGTLNHILNFLGKCGRTESMMKLFYKMV 742

Query: 425 LSDYCKPDNYS-YTAMLNIYGSGGNVDNAIELFEEMSELGV 464
            S  C     S YT +L      G     +E+ + M + GV
Sbjct: 743 TS--CSTVGLSTYTILLRNLLIVGKWRKYVEVLQWMEDAGV 781



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 70/315 (22%), Positives = 136/315 (43%), Gaps = 5/315 (1%)

Query: 260 YSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMK 319
           Y  ++ ++A+  KV++   L+        KP+   ++ L      +G +     ++ +M+
Sbjct: 156 YGMMIRLHARHNKVDQARGLFFEMQEWRCKPNTDTYNSLIHAHARAGQWCWAINIMDDMQ 215

Query: 320 SLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAK 379
              + P+   YN ++ A G AG    A  L  +M E+G+ PD  T   ++  +       
Sbjct: 216 RAAIPPSRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLITHNIVLSAFKNGAQYS 275

Query: 380 DALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK-LSDYCKPDNYSYTA 438
            A+  +E M+ +K   D    N +++    IGL  EA  LF  M+     C PD  +YT+
Sbjct: 276 KAIAYFEIMKSSKVAPDTCTMNIVIHCLVKIGLYGEAIELFNSMRERRTTCHPDVVTYTS 335

Query: 439 MLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRG 498
           ++  Y   G  +N   +F+ M   GV  N++    L+          + +  F +    G
Sbjct: 336 IMYSYSVCGQAENCKAVFDIMVAEGVRPNIVSYNALLGAYASHGMHTEALETFKLLKQNG 395

Query: 499 VKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ--ANPKLVAFLNLIEDNSTGFENIKEE 556
           ++PD      LL+        E   +V   +++    P  V++  LI+  + G   + +E
Sbjct: 396 LRPDIVSYTSLLNAYGRSAQPEKAREVFNEMRKNACKPNKVSYNALID--AYGSAGMLKE 453

Query: 557 FRNVIKDTEVDARRP 571
             +++ + E D  +P
Sbjct: 454 AISLLHEMEQDGIQP 468



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 137/316 (43%), Gaps = 10/316 (3%)

Query: 295 FSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMV 354
           + ++ ++       D  R +  EM+    +PN   YN+L+ A  +AG+   A ++ D+M 
Sbjct: 156 YGMMIRLHARHNKVDQARGLFFEMQEWRCKPNTDTYNSLIHAHARAGQWCWAINIMDDMQ 215

Query: 355 ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
            + + P   T   +I   G A   K ALEL ++M EN    D I +N +L+   +     
Sbjct: 216 RAAIPPSRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLITHNIVLSAFKNGAQYS 275

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN--VMGCT 472
           +A   FE MK S    PD  +   +++     G    AIELF  M E     +  V+  T
Sbjct: 276 KAIAYFEIMK-SSKVAPDTCTMNIVIHCLVKIGLYGEAIELFNSMRERRTTCHPDVVTYT 334

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQA 532
            ++       + ++   VF + +  GV+P+      LL   +      +  +    L+Q 
Sbjct: 335 SIMYSYSVCGQAENCKAVFDIMVAEGVRPNIVSYNALLGAYASHGMHTEALETFKLLKQN 394

Query: 533 N--PKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRP---FCNCLIDICRNRNLNE 587
              P +V++ +L+  N+ G     E+ R V  +   +A +P     N LID   +  + +
Sbjct: 395 GLRPDIVSYTSLL--NAYGRSAQPEKAREVFNEMRKNACKPNKVSYNALIDAYGSAGMLK 452

Query: 588 RAHELLYLGTLYGLYP 603
            A  LL+     G+ P
Sbjct: 453 EAISLLHEMEQDGIQP 468



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 84/368 (22%), Positives = 143/368 (38%), Gaps = 35/368 (9%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           +K+   FN ++     P   + YN  + +       +    L +EM  + I+ D I+ ST
Sbjct: 417 EKAREVFNEMRKNACKP-NKVSYNALIDAYGSAGMLKEAISLLHEMEQDGIQPDVISIST 475

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           ++T   RC    +           G+  + V Y++ +  Y   G  ++ L LY    A  
Sbjct: 476 LLTACGRCKQLTKIDIILAAAKSRGIQLNTVAYNSGIGSYLSLGDYKKALVLYTSMRAGN 535

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
            KPD + +++L     + G Y       ++M  L +     VY++++ +  K GK   A 
Sbjct: 536 VKPDAVTYNILISGSCKLGRYVESLKFFEDMLDLNIHLTKEVYSSVICSYVKQGKLTEAA 595

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
           S F+ M E+G  PD  T T LIK Y      + A +L++ M  N    D I+ ++L+   
Sbjct: 596 STFNSMKETGCFPDVLTYTTLIKAYSDDGSWRRAWDLFKEMENNGTQPDAIVCSSLMEAL 655

Query: 408 ADIGLVEEAERLFEDMK--------------------LSDYCKPDNY------------- 434
              G  E   +L E MK                    L D+                   
Sbjct: 656 NKGGQPERVLQLIEFMKQKKIQLNQKAYFEIISSCTMLRDWKTASQIIEHLDSSLSSISF 715

Query: 435 -SYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGV 493
            +   +LN  G  G  ++ ++LF +M      + +   T L++ L    +    V V   
Sbjct: 716 GTLNHILNFLGKCGRTESMMKLFYKMVTSCSTVGLSTYTILLRNLLIVGKWRKYVEVLQW 775

Query: 494 SIDRGVKP 501
             D GV P
Sbjct: 776 MEDAGVCP 783



 Score = 44.7 bits (104), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 76/168 (45%), Gaps = 1/168 (0%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           W++++  F  +++    P + I  +  M++L  G Q + + QL   M   +I+L+   Y 
Sbjct: 626 WRRAWDLFKEMENNGTQP-DAIVCSSLMEALNKGGQPERVLQLIEFMKQKKIQLNQKAYF 684

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
            II+       +  A +  E +  +       T + IL+   K G+ E ++ L+ + V S
Sbjct: 685 EIISSCTMLRDWKTASQIIEHLDSSLSSISFGTLNHILNFLGKCGRTESMMKLFYKMVTS 744

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLL 334
                   +++L +     G +     VLQ M+  GV P L +Y ++L
Sbjct: 745 CSTVGLSTYTILLRNLLIVGKWRKYVEVLQWMEDAGVCPTLYMYQSVL 792


>gi|255565671|ref|XP_002523825.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536913|gb|EEF38551.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 528

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 157/336 (46%), Gaps = 3/336 (0%)

Query: 155 ENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMV 214
           E    + + + F+Q +  FFNW  S+  F      YN  +      R F L  Q+ + M 
Sbjct: 111 EKCAAVRHGIPFFQ-ALSFFNWATSRPGFTHHPEPYNEMIDLAGKVRNFDLGWQVIDLMK 169

Query: 215 SNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVE 274
           +  +E+   T+S +I    R  L  EA+  F RM      PD++ +S ++ +  +  +  
Sbjct: 170 ARNVEISIETFSILIRRYVRAGLASEAVHAFNRMEDYNCKPDKIAFSILISILCRKRRAT 229

Query: 275 EVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLL 334
           E  S ++  +   ++PD I ++ L + +  +G+      V  EMK  G  PN+  Y  ++
Sbjct: 230 EAQSFFD-SLKDKFEPDVIVYTNLVRGWCRAGNIPEAERVFTEMKVAGCMPNVYTYTIVI 288

Query: 335 EAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWP 394
           +A+ + G+   A  +F EM++ G  P+  T   L++++ KA   +  L+++ +M+    P
Sbjct: 289 DALCRCGQITRAHDVFAEMLDVGCEPNSITFNNLLRVHVKAGRTEKVLQVYNQMKRMGCP 348

Query: 395 MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIE 454
            D + YN L+      G ++EA ++   M +   C P+  ++  +        +V+ A  
Sbjct: 349 PDTVTYNFLIESHCKDGNLDEALKVLNSM-VKKGCSPNASTFNGLFGSIAKLRDVNGAHR 407

Query: 455 LFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRV 490
           L+ +M EL    N +    L++     +  D ++++
Sbjct: 408 LYAKMKELKCKANTVTYNILMRMFVDTKSTDMVLKL 443



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 138/288 (47%), Gaps = 6/288 (2%)

Query: 214 VSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKV 273
           + ++ E D I Y+ ++    R     EA   F  M   G MP+  TY+ ++D   + G++
Sbjct: 238 LKDKFEPDVIVYTNLVRGWCRAGNIPEAERVFTEMKVAGCMPNVYTYTIVIDALCRCGQI 297

Query: 274 EEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTL 333
                ++   +  G +P+ I F+ L ++  ++G  + +  V  +MK +G  P+ V YN L
Sbjct: 298 TRAHDVFAEMLDVGCEPNSITFNNLLRVHVKAGRTEKVLQVYNQMKRMGCPPDTVTYNFL 357

Query: 334 LEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKW 393
           +E+  K G    A  + + MV+ G +P+  T   L     K R    A  L+ +M+E K 
Sbjct: 358 IESHCKDGNLDEALKVLNSMVKKGCSPNASTFNGLFGSIAKLRDVNGAHRLYAKMKELKC 417

Query: 394 PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAI 453
             + + YN L+ M  D    +   +L ++M   D  +P+  +Y  ++ +Y   G+ +NA 
Sbjct: 418 KANTVTYNILMRMFVDTKSTDMVLKLKKEMDEDD-VEPNVNTYCVLIAMYCGMGHWNNAY 476

Query: 454 ELFEEMSE---LGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRG 498
           + F EM E   L  ++ V     ++Q L KA ++     +  V +DRG
Sbjct: 477 KFFREMVEEKCLKPSLPVY--EKVLQQLRKAGQLKKHEELVAVMVDRG 522



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 121/293 (41%), Gaps = 2/293 (0%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           FF+ +K +  F  + I Y   ++           E++  EM       +  TY+ +I   
Sbjct: 234 FFDSLKDK--FEPDVIVYTNLVRGWCRAGNIPEAERVFTEMKVAGCMPNVYTYTIVIDAL 291

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            RC     A + F  M   G  P+ +T++ +L V+ K+G+ E+VL +Y +    G  PD 
Sbjct: 292 CRCGQITRAHDVFAEMLDVGCEPNSITFNNLLRVHVKAGRTEKVLQVYNQMKRMGCPPDT 351

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           + ++ L +   + G+ D    VL  M   G  PN   +N L  ++ K      A  L+ +
Sbjct: 352 VTYNFLIESHCKDGNLDEALKVLNSMVKKGCSPNASTFNGLFGSIAKLRDVNGAHRLYAK 411

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M E     +  T   L++++   +     L+L + M E+    +   Y  L+ M   +G 
Sbjct: 412 MKELKCKANTVTYNILMRMFVDTKSTDMVLKLKKEMDEDDVEPNVNTYCVLIAMYCGMGH 471

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
              A + F +M      KP    Y  +L      G +    EL   M + G A
Sbjct: 472 WNNAYKFFREMVEEKCLKPSLPVYEKVLQQLRKAGQLKKHEELVAVMVDRGFA 524



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 97/219 (44%), Gaps = 4/219 (1%)

Query: 330 YNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMR 389
           YN +++  GK     L   + D M    +    +T + LI+ Y +A  A +A+  + RM 
Sbjct: 145 YNEMIDLAGKVRNFDLGWQVIDLMKARNVEISIETFSILIRRYVRAGLASEAVHAFNRME 204

Query: 390 ENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNV 449
           +     D I ++ L+++        EA+  F+ +K  D  +PD   YT ++  +   GN+
Sbjct: 205 DYNCKPDKIAFSILISILCRKRRATEAQSFFDSLK--DKFEPDVIVYTNLVRGWCRAGNI 262

Query: 450 DNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCL 509
             A  +F EM   G   NV   T +I  L +  +I     VF   +D G +P+      L
Sbjct: 263 PEAERVFTEMKVAGCMPNVYTYTIVIDALCRCGQITRAHDVFAEMLDVGCEPNSITFNNL 322

Query: 510 LSVVSLCETSEDVGKVITCLQQAN--PKLVAFLNLIEDN 546
           L V      +E V +V   +++    P  V +  LIE +
Sbjct: 323 LRVHVKAGRTEKVLQVYNQMKRMGCPPDTVTYNFLIESH 361


>gi|125560423|gb|EAZ05871.1| hypothetical protein OsI_28108 [Oryza sativa Indica Group]
          Length = 608

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/360 (25%), Positives = 173/360 (48%), Gaps = 11/360 (3%)

Query: 158 LLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGR--QFQLIEQLANEMVS 215
           L+    LK W        W+++Q+ +    +  +  M    +G+   F   E++   M  
Sbjct: 113 LMRFKQLKKWNLVSEILEWLRTQHWWNFSEM--DFLMLVTAYGKLGDFSRAERVLKYMNK 170

Query: 216 NEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEE 275
              +   I+ + ++    R   + +A   F RM  +G  P  VTY  IL  + +  K +E
Sbjct: 171 KGYKPSVISQTALMEAYGRAKQYRKAEAVFRRMQTSGPEPSAVTYQIILKSFVEGDKYKE 230

Query: 276 VLSLYERGV---ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNT 332
             +++E  +    + +KPD   F ++  M+ ++GDY   R +  +M   G+  + V +N+
Sbjct: 231 AEAIFEDLLNEKRASFKPDQKMFHMMIYMYKKAGDYAQARKLFAQMSERGIPLSTVTFNS 290

Query: 333 LLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENK 392
           L+       +     +++D+M  + L PD  + + LIK YGKAR  ++AL ++E M +  
Sbjct: 291 LMSFETDYKE---VSNIYDQMQRTALKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAG 347

Query: 393 WPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNA 452
                  YN L++  A  GLVEEA  +F+ M+     +PD  SYT M+  Y +  ++D A
Sbjct: 348 VRPTRKSYNILIDAFAISGLVEEAHTVFKAMR-RHRVEPDLCSYTTMVLAYVNASDMDGA 406

Query: 453 IELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSV 512
            + F  + E G+  NV+    L++   K   ++ ++RV+     +GV+P+  +   ++ V
Sbjct: 407 EKFFRRIKEDGLKPNVVVYGTLMKGYSKLNNVERVMRVYERMRMQGVEPNQTIYTTIMDV 466



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 129/268 (48%), Gaps = 5/268 (1%)

Query: 179 SQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLF 238
           S+   P+ T+ +N  M    F   ++ +  + ++M    ++ D ++YS +I    +    
Sbjct: 277 SERGIPLSTVTFNSLMS---FETDYKEVSNIYDQMQRTALKPDVVSYSLLIKAYGKARRE 333

Query: 239 DEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
           +EA+  FE M   G+ P   +Y+ ++D +A SG VEE  ++++       +PD  +++ +
Sbjct: 334 EEALAVFEEMLDAGVRPTRKSYNILIDAFAISGLVEEAHTVFKAMRRHRVEPDLCSYTTM 393

Query: 299 GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
              +  + D DG     + +K  G++PN+VVY TL++   K         +++ M   G+
Sbjct: 394 VLAYVNASDMDGAEKFFRRIKEDGLKPNVVVYGTLMKGYSKLNNVERVMRVYERMRMQGV 453

Query: 359 TPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAER 418
            P++   T ++ ++G+     +A+  ++ M    +P D    N LL++       EEA  
Sbjct: 454 EPNQTIYTTIMDVHGRNSDFGNAVIWFKEMEARGYPADKKAKNILLSLAKTPEEQEEANE 513

Query: 419 LFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
           L  +  +    KPD  +Y   L I G+G
Sbjct: 514 LTGNCAIQLEAKPDGTTYG--LEINGTG 539



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 137/297 (46%), Gaps = 17/297 (5%)

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG---KVEEVLSLYERGVASGWK 289
           K+ NL  E +EW    +       E+ +  ++  Y K G   + E VL    +    G+K
Sbjct: 120 KKWNLVSEILEWLRTQHWWNF--SEMDFLMLVTAYGKLGDFSRAERVLKYMNK---KGYK 174

Query: 290 PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSL 349
           P  I+ + L + +G +  Y     V + M++ G +P+ V Y  +L++  +  K   A ++
Sbjct: 175 PSVISQTALMEAYGRAKQYRKAEAVFRRMQTSGPEPSAVTYQIILKSFVEGDKYKEAEAI 234

Query: 350 FDEMV---ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
           F++++    +   PD+K    +I +Y KA     A +L+ +M E   P+  + +N+L++ 
Sbjct: 235 FEDLLNEKRASFKPDQKMFHMMIYMYKKAGDYAQARKLFAQMSERGIPLSTVTFNSLMSF 294

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
             D    +E   +++ M+ +   KPD  SY+ ++  YG     + A+ +FEEM + GV  
Sbjct: 295 ETDY---KEVSNIYDQMQRTA-LKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRP 350

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVG 523
                  LI     +  +++   VF       V+PD  LC     V++    S+  G
Sbjct: 351 TRKSYNILIDAFAISGLVEEAHTVFKAMRRHRVEPD--LCSYTTMVLAYVNASDMDG 405



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/284 (22%), Positives = 133/284 (46%), Gaps = 13/284 (4%)

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
           W    + F +L   +G+ GD+     VL+ M   G +P+++    L+EA G+A +   A 
Sbjct: 138 WNFSEMDFLMLVTAYGKLGDFSRAERVLKYMNKKGYKPSVISQTALMEAYGRAKQYRKAE 197

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENK---WPMDFILYNTLL 404
           ++F  M  SG  P   T   ++K + +    K+A  ++E +   K   +  D  +++ ++
Sbjct: 198 AVFRRMQTSGPEPSAVTYQIILKSFVEGDKYKEAEAIFEDLLNEKRASFKPDQKMFHMMI 257

Query: 405 NMCADIGLVEEAERLFEDMKLSDYCKP-DNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
            M    G   +A +LF  M  S+   P    ++ ++++       V N   ++++M    
Sbjct: 258 YMYKKAGDYAQARKLFAQM--SERGIPLSTVTFNSLMSFETDYKEVSN---IYDQMQRTA 312

Query: 464 VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVG 523
           +  +V+  + LI+  GKARR ++ + VF   +D GV+P  +    L+   ++    E+  
Sbjct: 313 LKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKSYNILIDAFAISGLVEEAH 372

Query: 524 KVITCL--QQANPKLVAFLNLIED--NSTGFENIKEEFRNVIKD 563
            V   +   +  P L ++  ++    N++  +  ++ FR + +D
Sbjct: 373 TVFKAMRRHRVEPDLCSYTTMVLAYVNASDMDGAEKFFRRIKED 416


>gi|115468576|ref|NP_001057887.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|113595927|dbj|BAF19801.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|125597608|gb|EAZ37388.1| hypothetical protein OsJ_21726 [Oryza sativa Japonica Group]
          Length = 687

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 130/254 (51%), Gaps = 1/254 (0%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L +EM +  +ELD   Y  +I      +  DEA     +M ++GL P+ + Y+ ++D   
Sbjct: 420 LLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACF 479

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           KSGKV E +++ ++ + SG++P+ I +  L     ++G  D       +M+ LG+ PN+ 
Sbjct: 480 KSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQ 539

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            Y  L++ + K G    A  LF+EMV  G++ D+   TAL+  Y K     DA  L  +M
Sbjct: 540 AYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKM 599

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
            ++   +D   Y   ++   ++ ++ EA  +F +M +     PD   Y  +++ Y   GN
Sbjct: 600 IDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEM-IGHGIAPDRAVYNCLISKYQKLGN 658

Query: 449 VDNAIELFEEMSEL 462
           ++ AI L +EM  +
Sbjct: 659 LEEAISLQDEMERV 672



 Score =  122 bits (307), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 93/353 (26%), Positives = 159/353 (45%), Gaps = 12/353 (3%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F+ +K     P + + +N  +       +   +EQL  EM  +  + D +TY+ +I C 
Sbjct: 210 LFSRMKEMGCLP-DVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCF 268

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +    + A  +F  M + G+M + VT+S  +D + K G V E + L+ +    G   + 
Sbjct: 269 CKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNE 328

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
             ++ L     ++G  D    +L EM   GV  N+V Y  L++ + K  K   A  +   
Sbjct: 329 FTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRM 388

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M ++G+  +E   T LI  +   + ++ AL L   M+     +D  LY  L+    ++  
Sbjct: 389 MEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHK 448

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
           ++EA+ L   M  S   +P+   YT M++     G V  AI + +++ + G   NV+   
Sbjct: 449 LDEAKSLLTKMDESGL-EPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYC 507

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPD--------DRLC--GCLLSVVSL 515
            LI  L KA  ID+ +  F    D G+ P+        D LC  GCL   V L
Sbjct: 508 ALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQL 560



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 96/356 (26%), Positives = 165/356 (46%), Gaps = 13/356 (3%)

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           EA   F RM + G +PD VT+++++D Y K G+++EV  L E    SG K D + ++ L 
Sbjct: 206 EARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALI 265

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
             F + G  +        MK  GV  N+V ++T ++A  K G    A  LF +M   G+ 
Sbjct: 266 NCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMA 325

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
            +E T T LI    KA    DA+ L + M     P++ + Y  L++       V EAE +
Sbjct: 326 LNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDV 385

Query: 420 FEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479
              M+ +   + +   YT +++ +    N + A+ L  EM   G+ +++     LIQ L 
Sbjct: 386 LRMMEKAGV-RANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLC 444

Query: 480 KARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQA-----NP 534
              ++D+   +     + G++P+  +     +++  C  S  V + I  LQ+       P
Sbjct: 445 NVHKLDEAKSLLTKMDESGLEPNYII---YTTMMDACFKSGKVPEAIAMLQKILDSGFQP 501

Query: 535 KLVAFLNLIEDNSTGFENIKEEFR--NVIKDTEVDARRPFCNCLID-ICRNRNLNE 587
            ++ +  LI D      +I E     N ++D  +D        L+D +C+N  LNE
Sbjct: 502 NVITYCALI-DGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNE 556



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 143/303 (47%), Gaps = 1/303 (0%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L +EMV   + L+ +TY+ ++    +     EA +    M K G+  +E+ Y+ ++  + 
Sbjct: 350 LLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHF 409

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
            +   E+ L L       G + D   +  L +        D  + +L +M   G++PN +
Sbjct: 410 MNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYI 469

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
           +Y T+++A  K+GK   A ++  ++++SG  P+  T  ALI    KA    +A+  + +M
Sbjct: 470 IYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKM 529

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
           R+     +   Y  L++     G + EA +LF +M +      D   YTA+L+ Y   GN
Sbjct: 530 RDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEM-VHKGMSLDKVVYTALLDGYLKQGN 588

Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGC 508
           + +A  L  +M + G+ +++   TC I        + +   VF   I  G+ PD  +  C
Sbjct: 589 LHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNC 648

Query: 509 LLS 511
           L+S
Sbjct: 649 LIS 651



 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 107/254 (42%), Gaps = 34/254 (13%)

Query: 279 LYERGVASGWKPDPIAFSV--LGKMFGESGDYDGIRYVLQEMKSLGV------------- 323
           L+   +A G +   +A  V  L  +  + G  D     +  ++ L V             
Sbjct: 107 LHRAALALGPRRSALASVVDTLLSVLADRGLLDDAVRAVARVRELRVPPNTRTCNHILLR 166

Query: 324 ------------------QPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
                              PN+  +N +++ + K G+   ARSLF  M E G  PD  T 
Sbjct: 167 LARDRSGRLVRRLFEQLPAPNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTF 226

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
            +LI  YGK     +  +L E MR +    D + YN L+N     G +E A   F  MK 
Sbjct: 227 NSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMK- 285

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
            +    +  +++  ++ +   G V  A++LF +M   G+A+N    TCLI    KA R+D
Sbjct: 286 REGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLD 345

Query: 486 DLVRVFGVSIDRGV 499
           D + +    + +GV
Sbjct: 346 DAIVLLDEMVRQGV 359


>gi|242077154|ref|XP_002448513.1| hypothetical protein SORBIDRAFT_06g028250 [Sorghum bicolor]
 gi|241939696|gb|EES12841.1| hypothetical protein SORBIDRAFT_06g028250 [Sorghum bicolor]
          Length = 718

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 120/467 (25%), Positives = 199/467 (42%), Gaps = 23/467 (4%)

Query: 203 FQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYK---TGLMPDEVT 259
           F+  E L +EM ++   LD  TY   +    R    D A + F+ M +    G  P  V 
Sbjct: 177 FKAFEVL-DEMATSGCALDESTYELAVPALARAGRIDAARKMFDEMKQREGIGRAPVGV- 234

Query: 260 YSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMK 319
           YS ++DV AK+G+++  + +Y   VA G +      + + +    SG  D    + +EM+
Sbjct: 235 YSVMVDVLAKAGRLDAAMGMYREMVAVGHRVSTAVSTAMVEALVRSGKLDAGMELWEEMR 294

Query: 320 SLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAK 379
             G++P+  +Y  ++EA  ++G+  +A  LF +M +SG  P   T   L++++  A    
Sbjct: 295 RGGLRPSFGLYTMVVEANARSGRLDMAAKLFGDMEKSGFFPTPATYACLVEMHASAGQVD 354

Query: 380 DALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAM 439
            A+ L+  M           +  LL M A+  L++ A ++  +MK S +  P   + + +
Sbjct: 355 AAMRLYHSMANAGTRPGLSTFTALLTMLANKRLLDLAAKVLLEMKASGF--PIEVTASDL 412

Query: 440 LNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGV 499
           L IY   G+ D A+     M   G+  N      L +   K    D    +    +    
Sbjct: 413 LMIYIKDGSTDLALRWLRFMGSAGIRTNNFIIRQLFESCMKTGLYDSARPLLEAYVAGAA 472

Query: 500 KPDDRLCGCLLSVVSLC--ETSEDVGKVITCL--QQANPKLVAFLNLIEDNSTG-FENIK 554
           K D  L   +L+ +  C  E+SE     I C    +A+  +       E         ++
Sbjct: 473 KVDLILYTSILAHLVRCQDESSERAIMDILCASKHKAHDFMCGLFTGPEQRKQPVLSFVR 532

Query: 555 EEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAH---ELLYLGTLYGLYPGLHNKTLD 611
           E F+ +  D E  A R F N L++         RA    ++ Y   L+           D
Sbjct: 533 EFFQGIDYDNEESAARYFVNVLLNYLVLMGQMNRARCVWKVAYENKLFA-----KAIVFD 587

Query: 612 E---WSLDVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQLFLAETG 655
           +   WSLDVRSLSVGAA  A    +    K +L   V+P+     TG
Sbjct: 588 QHIAWSLDVRSLSVGAALVATVHTLHRFRKRMLYYGVVPRRIKLVTG 634


>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Glycine max]
          Length = 623

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 98/390 (25%), Positives = 171/390 (43%), Gaps = 40/390 (10%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           +K+  F   +++  + P   + YN  +       +FQ    +   M    +E D  TY++
Sbjct: 233 KKAKEFIGHMETLGVKP-NVVTYNTIIHGHCLRGKFQRARVIFQTMKDKGLEPDCYTYNS 291

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS----LYERG 283
            I+   +    +EA     +M + GL+P+ VTY+A++D Y   G +++  +    +  +G
Sbjct: 292 FISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALIDGYCNKGDLDKAYAYRDEMISKG 351

Query: 284 VAS-------------------------------GWKPDPIAFSVLGKMFGESGDYDGIR 312
           + +                               G  PD +  ++L   +   GD     
Sbjct: 352 IMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNILINGYCRCGDAKRAF 411

Query: 313 YVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIY 372
            +L EM   G+QP LV Y +L+  +GK  +   A +LF ++ + GL PD     ALI  +
Sbjct: 412 GLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALIDGH 471

Query: 373 GKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPD 432
                   A +L + M   K   D I YNTL+      G VEEA +L ++MK     KPD
Sbjct: 472 CANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRG-IKPD 530

Query: 433 NYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFG 492
           + SY  +++ Y   G++ +A  + +EM   G    ++    LIQ L K +  +    +  
Sbjct: 531 HISYNTLISGYSKRGDMKDAFRVRDEMMTTGFDPTILTYNALIQGLCKNQEGEHAEELLK 590

Query: 493 VSIDRGVKPDDRLCGCLLSVVSLCETSEDV 522
             + +G+ PDD      LS++   ET +D+
Sbjct: 591 EMVSKGITPDD---STYLSIIEAMETVDDL 617



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 81/365 (22%), Positives = 152/365 (41%), Gaps = 39/365 (10%)

Query: 174 FNWIKSQNLFP-METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           F  IK +   P +ET    +++  L+  R  Q+   L  EM    I     T++ +I   
Sbjct: 169 FYLIKEKGFVPNIETCNQMLSL-FLKLNRT-QMAWVLYAEMFRMNIRSSLYTFNIMINVL 226

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +     +A E+   M   G+ P+ VTY+ I+  +   GK +    +++     G +PD 
Sbjct: 227 CKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGKFQRARVIFQTMKDKGLEPDC 286

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLE----------------- 335
             ++       + G  +    ++ +M   G+ PN V YN L++                 
Sbjct: 287 YTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALIDGYCNKGDLDKAYAYRDE 346

Query: 336 ------------------AMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARW 377
                             A+   G+ G A ++  EM E G+ PD  T   LI  Y +   
Sbjct: 347 MISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNILINGYCRCGD 406

Query: 378 AKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYT 437
           AK A  L + M         + Y +L+ +      ++EA+ LF  ++  +   PD   + 
Sbjct: 407 AKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQ-QEGLLPDIIVFN 465

Query: 438 AMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDR 497
           A+++ + + GN+D A +L +EM  + V  + +    L+Q   +  ++++  ++      R
Sbjct: 466 ALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRR 525

Query: 498 GVKPD 502
           G+KPD
Sbjct: 526 GIKPD 530



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 69/298 (23%), Positives = 125/298 (41%), Gaps = 34/298 (11%)

Query: 239 DEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
           +EA+E F  + + G +P+  T + +L ++ K  + +    LY        +     F+++
Sbjct: 163 NEALECFYLIKEKGFVPNIETCNQMLSLFLKLNRTQMAWVLYAEMFRMNIRSSLYTFNIM 222

Query: 299 GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
             +  + G     +  +  M++LGV+PN+V YNT++      GK   AR +F  M + GL
Sbjct: 223 INVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGKFQRARVIFQTMKDKGL 282

Query: 359 TPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEA-- 416
            PD  T  + I    K    ++A  L  +M E     + + YN L++   + G +++A  
Sbjct: 283 EPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALIDGYCNKGDLDKAYA 342

Query: 417 ---------------------ERLFEDMKLSDY-----------CKPDNYSYTAMLNIYG 444
                                  LF + ++ D              PD  ++  ++N Y 
Sbjct: 343 YRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNILINGYC 402

Query: 445 SGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
             G+   A  L +EM   G+   ++  T LI  LGK  R+ +   +F      G+ PD
Sbjct: 403 RCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPD 460



 Score = 40.0 bits (92), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 33/175 (18%), Positives = 76/175 (43%), Gaps = 1/175 (0%)

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
           ++++ L+ A  +  KP  A   F  + E G  P+ +T   ++ ++ K    + A  L+  
Sbjct: 147 LIFDLLVRAYCELKKPNEALECFYLIKEKGFVPNIETCNQMLSLFLKLNRTQMAWVLYAE 206

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           M           +N ++N+    G +++A+     M+     KP+  +Y  +++ +   G
Sbjct: 207 MFRMNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHMETLG-VKPNVVTYNTIIHGHCLRG 265

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
               A  +F+ M + G+  +       I  L K  R+++   +    ++ G+ P+
Sbjct: 266 KFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPN 320


>gi|224054488|ref|XP_002298285.1| predicted protein [Populus trichocarpa]
 gi|222845543|gb|EEE83090.1| predicted protein [Populus trichocarpa]
          Length = 575

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 160/337 (47%), Gaps = 7/337 (2%)

Query: 158 LLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNE 217
           L+    LK W        W++SQ+ +    + + + + +      F   E +   M  N 
Sbjct: 87  LVRFKQLKKWDLVSEILEWLQSQHWWDFNEMDFLMLITAYGKLGDFNGAEMVLRSMNGNG 146

Query: 218 IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL 277
              + ++++ ++    R   ++ A   F RM  +G  P  +TY  IL  + +  K +E  
Sbjct: 147 YVPNVVSHTALMEAYGRGGRYNNAEAIFRRMQTSGPEPSALTYQIILKTFVEGNKFKEAE 206

Query: 278 SLYERGVA---SGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLL 334
            ++E  +    S  +PD   F ++  M  ++G+Y+  R V   M   GV  + V YN+L+
Sbjct: 207 EVFETLLNKENSPLEPDQKMFHMMIYMQKKAGNYEKARKVFALMAERGVPQSTVTYNSLM 266

Query: 335 EAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWP 394
                  +      ++D+M  SGL PD  +   LIK YG+AR  ++AL ++E M +    
Sbjct: 267 SFETNYKE---VSKIYDQMQRSGLRPDVVSYALLIKAYGRARREEEALAVFEEMLDAGVR 323

Query: 395 MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIE 454
                YN LL+  A  G+VE+A  +F+ M+  D C PD  SYT ML+ Y +  +++ A  
Sbjct: 324 PSHKAYNILLDAFAISGMVEQARVVFKSMR-RDRCTPDLCSYTTMLSAYVNASDMEGAEN 382

Query: 455 LFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
            F+ + + G+  NV+    LI+   K   ++ ++ ++
Sbjct: 383 FFKRLRQDGLKPNVVTYGALIKGHAKVNNLEKMMEIY 419



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 68/278 (24%), Positives = 140/278 (50%), Gaps = 7/278 (2%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNE---IELDNITYSTIITCAKRCNLFDEAIEWFE 246
           Y + +K+   G +F+  E++   +++ E   +E D   +  +I   K+   +++A + F 
Sbjct: 189 YQIILKTFVEGNKFKEAEEVFETLLNKENSPLEPDQKMFHMMIYMQKKAGNYEKARKVFA 248

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
            M + G+    VTY++++         +EV  +Y++   SG +PD +++++L K +G + 
Sbjct: 249 LMAERGVPQSTVTYNSLMSF---ETNYKEVSKIYDQMQRSGLRPDVVSYALLIKAYGRAR 305

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
             +    V +EM   GV+P+   YN LL+A   +G    AR +F  M     TPD  + T
Sbjct: 306 REEEALAVFEEMLDAGVRPSHKAYNILLDAFAISGMVEQARVVFKSMRRDRCTPDLCSYT 365

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
            ++  Y  A   + A   ++R+R++    + + Y  L+   A +  +E+   ++E+M+L+
Sbjct: 366 TMLSAYVNASDMEGAENFFKRLRQDGLKPNVVTYGALIKGHAKVNNLEKMMEIYEEMQLN 425

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
              K +    T +++ YG   +  +A+  ++EM   GV
Sbjct: 426 S-IKANQTILTTIMDAYGKNKDFGSAVIWYKEMEHHGV 462



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 141/285 (49%), Gaps = 15/285 (5%)

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
           W  + + F +L   +G+ GD++G   VL+ M   G  PN+V +  L+EA G+ G+   A 
Sbjct: 112 WDFNEMDFLMLITAYGKLGDFNGAEMVLRSMNGNGYVPNVVSHTALMEAYGRGGRYNNAE 171

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM--RENKWPM--DFILYNTL 403
           ++F  M  SG  P   T   ++K + +    K+A E++E +  +EN  P+  D  +++ +
Sbjct: 172 AIFRRMQTSGPEPSALTYQIILKTFVEGNKFKEAEEVFETLLNKENS-PLEPDQKMFHMM 230

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDN-YSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
           + M    G  E+A ++F  M  ++   P +  +Y ++++      N     +++++M   
Sbjct: 231 IYMQKKAGNYEKARKVFALM--AERGVPQSTVTYNSLMSF---ETNYKEVSKIYDQMQRS 285

Query: 463 GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDV 522
           G+  +V+    LI+  G+ARR ++ + VF   +D GV+P  +    LL   ++    E  
Sbjct: 286 GLRPDVVSYALLIKAYGRARREEEALAVFEEMLDAGVRPSHKAYNILLDAFAISGMVEQA 345

Query: 523 GKVITCLQ--QANPKLVAFLNLIED--NSTGFENIKEEFRNVIKD 563
             V   ++  +  P L ++  ++    N++  E  +  F+ + +D
Sbjct: 346 RVVFKSMRRDRCTPDLCSYTTMLSAYVNASDMEGAENFFKRLRQD 390



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/253 (22%), Positives = 118/253 (46%), Gaps = 11/253 (4%)

Query: 175 NWIKSQNLF--------PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           N+ K++ +F        P  T+ YN  M    F   ++ + ++ ++M  + +  D ++Y+
Sbjct: 239 NYEKARKVFALMAERGVPQSTVTYNSLMS---FETNYKEVSKIYDQMQRSGLRPDVVSYA 295

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
            +I    R    +EA+  FE M   G+ P    Y+ +LD +A SG VE+   +++     
Sbjct: 296 LLIKAYGRARREEEALAVFEEMLDAGVRPSHKAYNILLDAFAISGMVEQARVVFKSMRRD 355

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
              PD  +++ +   +  + D +G     + ++  G++PN+V Y  L++   K       
Sbjct: 356 RCTPDLCSYTTMLSAYVNASDMEGAENFFKRLRQDGLKPNVVTYGALIKGHAKVNNLEKM 415

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
             +++EM  + +  ++  LT ++  YGK +    A+  ++ M  +  P D    N LL++
Sbjct: 416 MEIYEEMQLNSIKANQTILTTIMDAYGKNKDFGSAVIWYKEMEHHGVPPDQKAQNILLSL 475

Query: 407 CADIGLVEEAERL 419
                  +EA +L
Sbjct: 476 AKTQDEQKEASQL 488


>gi|15235288|ref|NP_193742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098720|sp|O49436.1|PP327_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g20090; AltName: Full=Protein EMBRYO DEFECTIVE 1025
 gi|2827663|emb|CAA16617.1| membrane-associated salt-inducible-like protein [Arabidopsis
           thaliana]
 gi|7268804|emb|CAB79009.1| membrane-associated salt-inducible-like protein [Arabidopsis
           thaliana]
 gi|58013024|gb|AAW62965.1| embryo-defective 1025 [Arabidopsis thaliana]
 gi|332658871|gb|AEE84271.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 660

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/361 (24%), Positives = 174/361 (48%), Gaps = 9/361 (2%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           ++    + ++S+   P   + YNV +  L        + +L + M       + +TY+T+
Sbjct: 240 EAVLLLDEMQSEGCSP-SPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTL 298

Query: 229 IT--CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           I   C K     D+A+   ERM  +  +P++VTY  +++   K  +  + + L       
Sbjct: 299 IHGLCLK--GKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEER 356

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G+  +   +SVL     + G  +    + ++M   G +PN+VVY+ L++ + + GKP  A
Sbjct: 357 GYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEA 416

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
           + + + M+ SG  P+  T ++L+K + K    ++A+++W+ M +     +   Y+ L++ 
Sbjct: 417 KEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDG 476

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM---SELG 463
              +G V+EA  ++  M L+   KPD  +Y++++      G++D A++L+ EM    E  
Sbjct: 477 LCGVGRVKEAMMVWSKM-LTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPK 535

Query: 464 VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVG 523
              +V+    L+  L   + I   V +    +DRG  PD   C   L+ +S    S D G
Sbjct: 536 SQPDVVTYNILLDGLCMQKDISRAVDLLNSMLDRGCDPDVITCNTFLNTLSEKSNSCDKG 595

Query: 524 K 524
           +
Sbjct: 596 R 596



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/346 (23%), Positives = 152/346 (43%), Gaps = 34/346 (9%)

Query: 191 NVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYK 250
           NV +    + R  +  + + N  ++  I  + ++++ +I    +    D AIE F  M +
Sbjct: 156 NVIINEGLYHRGLEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPE 215

Query: 251 TGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDG 310
              +PD  TY  ++D   K  +++E + L +   + G  P P+ ++VL     + GD   
Sbjct: 216 RKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTR 275

Query: 311 IRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK 370
           +  ++  M   G  PN V YNTL+  +   GK   A SL + MV S   P++ T   LI 
Sbjct: 276 VTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLIN 335

Query: 371 IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK------ 424
              K R A DA+ L   M E  + ++  +Y+ L++     G  EEA  L+  M       
Sbjct: 336 GLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKP 395

Query: 425 ----------------------------LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELF 456
                                       ++  C P+ Y+Y++++  +   G  + A++++
Sbjct: 396 NIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVW 455

Query: 457 EEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           +EM + G + N    + LI  L    R+ + + V+   +  G+KPD
Sbjct: 456 KEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPD 501



 Score = 45.4 bits (106), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 44/197 (22%), Positives = 84/197 (42%), Gaps = 15/197 (7%)

Query: 302 FGESGDYDGIRYVLQEMKSLGVQPNLVV---YNTLLEAMGKAGKPGLARSLFDEMV-ESG 357
           +  SGD+D +  +L  ++   ++  +++   +  +  A GKA  P  A  LF  MV E  
Sbjct: 87  YANSGDFDSVEKLLSRIR---LENRVIIERSFIVVFRAYGKAHLPDKAVDLFHRMVDEFR 143

Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDF----ILYNTLLNMCADIGLV 413
                K+  +++ +          LE ++ +  +   M+     + +N ++     +  V
Sbjct: 144 CKRSVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLRFV 203

Query: 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTC 473
           + A  +F  M     C PD Y+Y  +++       +D A+ L +EM   G + + +    
Sbjct: 204 DRAIEVFRGMP-ERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNV 262

Query: 474 LIQCLGKARRIDDLVRV 490
           LI  L K     DL RV
Sbjct: 263 LIDGLCKK---GDLTRV 276


>gi|225424178|ref|XP_002280443.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial [Vitis vinifera]
          Length = 531

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/364 (25%), Positives = 163/364 (44%), Gaps = 36/364 (9%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           FF W + Q  F   T  YN  +++L   +QF++I  L N+M S  + L   T++ I    
Sbjct: 131 FFRWAEKQKGFKYSTENYNALIEALGKIKQFKMIWNLVNDMRSKGL-LTQETFALISRRY 189

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            R     EA+E FE+M K GL P    ++ +LD   KS  VE    ++++     ++PD 
Sbjct: 190 ARARKVKEAVETFEKMEKFGLQPVLSDFNRLLDALCKSRHVERAQEVFDKMKDRKFRPDI 249

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
            ++++L + +G+  +   +  V +EMK  G +P+ V Y  L+ A  KA +   A  LF +
Sbjct: 250 KSYTILLEGWGQEQNLLRLDEVYREMKDEGFEPDAVTYGILINAHCKARRYDAAVELFHK 309

Query: 353 M-----------------------------------VESGLTPDEKTLTALIKIYGKARW 377
           M                                     SG TP+  T  A++  Y ++  
Sbjct: 310 MEANKCMPTPHIYCTLINGLGSERRLTEALQFFERSKASGFTPEAPTYNAVVGSYCQSMR 369

Query: 378 AKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYT 437
             DA  + + MR+         Y+ +L+        +EA R+F+ M     C+P   +Y 
Sbjct: 370 MDDAYRIVDEMRKCGVGPQTRTYDIILHHLIKARRTKEAYRVFQGMSSEPGCEPSVSTYE 429

Query: 438 AMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDR 497
            ++ ++ +   VD A+ +++EM   GV   +   + LI  L    ++D+  + F   +D 
Sbjct: 430 IVVRMFCNEERVDMALRVWDEMKAKGVLPGMHMFSTLINSLCYENKLDEACKYFHEMLDM 489

Query: 498 GVKP 501
           G++P
Sbjct: 490 GIRP 493


>gi|302803484|ref|XP_002983495.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
 gi|300148738|gb|EFJ15396.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
          Length = 561

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 111/435 (25%), Positives = 205/435 (47%), Gaps = 32/435 (7%)

Query: 148 IPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVT---MKSLRFGRQFQ 204
           +P++ T  + +  L       ++Y   + ++ + + P   +   V     K+ RFG    
Sbjct: 27  VPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIRGLCKAGRFGDALG 86

Query: 205 LIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTG-LMPDEVTYSAI 263
             + +A    + +I    IT++ ++    +    +EA + FE M+ +   +P+ VTY+ +
Sbjct: 87  YFKTVAGTKCTPDI----ITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTV 142

Query: 264 LDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGV 323
           ++   K GK++  + L +    +G  P+ I +SVL +   ++G  D    +LQEM   G 
Sbjct: 143 INGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGF 202

Query: 324 QPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALE 383
           QP++++YNTLL  + K+ +   A  L   M+ SG  P   T  +L++++ +++    A  
Sbjct: 203 QPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFR 262

Query: 384 LWERMRENKWPMDFILYNTLL-NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNI 442
           L + M E   P D I YNT++  +C D  L ++A+ L + M ++  C PD  +Y+ +++ 
Sbjct: 263 LIQVMSERGCPPDVINYNTVIAGLCRDARL-DDAQALLKQM-VAARCVPDVITYSTIIDG 320

Query: 443 YGSGGNVD------NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496
                 VD       A E+ E M + G   N      +I+ L +AR+    + +    ID
Sbjct: 321 LCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMID 380

Query: 497 RGVKPDDRLCGCLLSVVSLCETSE-DVGKVITCL---QQANPKLVAFLNLIEDNSTG--- 549
             V PD  L    + + SLC++ + D    I  +   ++  P  VA+  LI+  S G   
Sbjct: 381 SEVVPD--LSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEV 438

Query: 550 ------FENIKEEFR 558
                 FE + E FR
Sbjct: 439 DKAVRVFELMVESFR 453



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 135/297 (45%), Gaps = 9/297 (3%)

Query: 191 NVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYK 250
           N+ +++ + G+  QL  +     V NE      TY ++I    +    D+A E  + M  
Sbjct: 6   NLLVRAGQHGQAVQLFRE--ERCVPNEF-----TYGSLIHGLCKAGKLDQAYELLDEMRD 58

Query: 251 TGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDG 310
            G+ P    ++ ++    K+G+  + L  ++    +   PD I F++L     +SG  + 
Sbjct: 59  RGIPPGVAVHNGVIRGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEE 118

Query: 311 IRYVLQEMK-SLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
              + + M  S    PN+V Y T++  + K GK   A  L D M E+G  P+  T + L+
Sbjct: 119 AFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLV 178

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
           +   KA        L + M    +  D I+YNTLLN       ++EA  L + M  S  C
Sbjct: 179 EGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSG-C 237

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
            P   +Y +++ ++     VD A  L + MSE G   +V+    +I  L +  R+DD
Sbjct: 238 YPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDD 294



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 90/335 (26%), Positives = 141/335 (42%), Gaps = 43/335 (12%)

Query: 172 FFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIIT- 230
           F    + S+   P + I YN  +  L    +    + L  +MV+     D ITYSTII  
Sbjct: 261 FRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDG 320

Query: 231 -CAK-RCNL---FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVA 285
            C   R +     + A E  E M +TG  P+  TY+ +++   ++ K ++ L+L  R + 
Sbjct: 321 LCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMID 380

Query: 286 SGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGL 345
           S   PD  +FS++     +S D D    +   M     +PN V Y  L++ + K G+   
Sbjct: 381 SEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDK 440

Query: 346 ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405
           A  +F+ MVES   P   T                                   YN++L+
Sbjct: 441 AVRVFELMVES-FRPGVAT-----------------------------------YNSVLD 464

Query: 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
               +G +EEA R+ E M +   C PD  SY A++        V+ A ELF+ +   G A
Sbjct: 465 GLCGVGRIEEAVRMVEGM-IHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFA 523

Query: 466 INVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
           + V     L+  L K +R+ D   V    I+ G K
Sbjct: 524 MEVGVYNVLVNELCKKKRLSDAHGVANKLIEAGYK 558



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 117/242 (48%), Gaps = 11/242 (4%)

Query: 264 LDVYAKSGKVEEVLSLY--ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
           L++  ++G+  + + L+  ER V     P+   +  L     ++G  D    +L EM+  
Sbjct: 5   LNLLVRAGQHGQAVQLFREERCV-----PNEFTYGSLIHGLCKAGKLDQAYELLDEMRDR 59

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
           G+ P + V+N ++  + KAG+ G A   F  +  +  TPD  T   L+    K+   ++A
Sbjct: 60  GIPPGVAVHNGVIRGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEA 119

Query: 382 LELWERMRENKWPM-DFILYNTLLN-MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAM 439
            +++E M  +   + + + Y T++N +C D G ++ A  L + M  +  C P+  +Y+ +
Sbjct: 120 FQIFESMHTSSQCLPNVVTYTTVINGLCKD-GKLDRAIELLDLMNETGCC-PNVITYSVL 177

Query: 440 LNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGV 499
           +      G  D    L +EM+  G   +V+    L+  L K+RR+D+ + +  + I  G 
Sbjct: 178 VEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGC 237

Query: 500 KP 501
            P
Sbjct: 238 YP 239



 Score = 40.8 bits (94), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 4/102 (3%)

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           N  LN+    G   +A +LF +    + C P+ ++Y ++++     G +D A EL +EM 
Sbjct: 2   NCALNLLVRAGQHGQAVQLFRE----ERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMR 57

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           + G+   V     +I+ L KA R  D +  F         PD
Sbjct: 58  DRGIPPGVAVHNGVIRGLCKAGRFGDALGYFKTVAGTKCTPD 99


>gi|302784458|ref|XP_002974001.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
 gi|300158333|gb|EFJ24956.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
          Length = 561

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 112/436 (25%), Positives = 207/436 (47%), Gaps = 34/436 (7%)

Query: 148 IPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSL----RFGRQF 203
           +P++ T  + +  L       ++Y   + ++ + + P   + +N  +K L    RFG   
Sbjct: 27  VPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAV-HNGVIKGLCKAGRFGDAL 85

Query: 204 QLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTG-LMPDEVTYSA 262
              + +A    + +I    IT++ ++    +    +EA + FE M+ +   +P+ VTY+ 
Sbjct: 86  GYFKTVAGTKCTPDI----ITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTT 141

Query: 263 ILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG 322
           +++   K GK++  + L +    +G  P+ I +SVL +   ++G  D    +LQEM   G
Sbjct: 142 VINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRG 201

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382
            QP++++YNTLL  + K+ +   A  L   M+ SG  P   T  +L++++ +++    A 
Sbjct: 202 FQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAF 261

Query: 383 ELWERMRENKWPMDFILYNTLL-NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
            L + M E   P D I YNT++  +C D  L ++A+ L + M ++  C PD  +Y+ +++
Sbjct: 262 RLIQVMSERGCPPDVINYNTVIAGLCRDARL-DDAQALLKQM-VAARCVPDVITYSTIID 319

Query: 442 IYGSGGNVD------NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSI 495
                  VD       A E+ E M + G   N      +I+ L +AR+    + +    I
Sbjct: 320 GLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMI 379

Query: 496 DRGVKPDDRLCGCLLSVVSLCETSE-DVGKVITCL---QQANPKLVAFLNLIEDNSTG-- 549
           D  V PD  L    + + SLC++ + D    I  +   ++  P  VA+  LI+  S G  
Sbjct: 380 DSEVVPD--LSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGE 437

Query: 550 -------FENIKEEFR 558
                  FE + E FR
Sbjct: 438 VDKAVRVFELMVESFR 453



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 135/297 (45%), Gaps = 9/297 (3%)

Query: 191 NVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYK 250
           N+ +++ + G+  QL  +     V NE      TY ++I    +    D+A E  + M  
Sbjct: 6   NLLVRAGQHGQAVQLFRE--ERCVPNEF-----TYGSLIHGLCKAGKLDQAYELLDEMRD 58

Query: 251 TGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDG 310
            G+ P    ++ ++    K+G+  + L  ++    +   PD I F++L     +SG  + 
Sbjct: 59  RGIPPGVAVHNGVIKGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEE 118

Query: 311 IRYVLQEMK-SLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
              + + M  S    PN+V Y T++  + K GK   A  L D M E+G  P+  T + L+
Sbjct: 119 AFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLV 178

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
           +   KA        L + M    +  D I+YNTLLN       ++EA  L + M  S  C
Sbjct: 179 EGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSG-C 237

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
            P   +Y +++ ++     VD A  L + MSE G   +V+    +I  L +  R+DD
Sbjct: 238 YPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDD 294



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 90/335 (26%), Positives = 141/335 (42%), Gaps = 43/335 (12%)

Query: 172 FFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIIT- 230
           F    + S+   P + I YN  +  L    +    + L  +MV+     D ITYSTII  
Sbjct: 261 FRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDG 320

Query: 231 -CAK-RCNL---FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVA 285
            C   R +     + A E  E M +TG  P+  TY+ +++   ++ K ++ L+L  R + 
Sbjct: 321 LCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMID 380

Query: 286 SGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGL 345
           S   PD  +FS++     +S D D    +   M     +PN V Y  L++ + K G+   
Sbjct: 381 SEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDK 440

Query: 346 ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405
           A  +F+ MVES   P   T                                   YN++L+
Sbjct: 441 AVRVFELMVES-FRPGVAT-----------------------------------YNSVLD 464

Query: 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
               +G +EEA R+ E M +   C PD  SY A++        V+ A ELF+ +   G A
Sbjct: 465 GLCGVGRIEEAVRMVEGM-IHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFA 523

Query: 466 INVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
           + V     L+  L K +R+ D   V    I+ G K
Sbjct: 524 MEVGVYNVLVNELCKKKRLSDAHGVANKLIEAGYK 558



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 118/242 (48%), Gaps = 11/242 (4%)

Query: 264 LDVYAKSGKVEEVLSLY--ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
           L++  ++G+  + + L+  ER V     P+   +  L     ++G  D    +L EM+  
Sbjct: 5   LNLLVRAGQHGQAVQLFREERCV-----PNEFTYGSLIHGLCKAGKLDQAYELLDEMRDR 59

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
           G+ P + V+N +++ + KAG+ G A   F  +  +  TPD  T   L+    K+   ++A
Sbjct: 60  GIPPGVAVHNGVIKGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEA 119

Query: 382 LELWERMRENKWPM-DFILYNTLLN-MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAM 439
            +++E M  +   + + + Y T++N +C D G ++ A  L + M  +  C P+  +Y+ +
Sbjct: 120 FQIFESMHTSSQCLPNVVTYTTVINGLCKD-GKLDRAIELLDLMNETGCC-PNVITYSVL 177

Query: 440 LNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGV 499
           +      G  D    L +EM+  G   +V+    L+  L K+RR+D+ + +  + I  G 
Sbjct: 178 VEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGC 237

Query: 500 KP 501
            P
Sbjct: 238 YP 239



 Score = 41.2 bits (95), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 4/102 (3%)

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           N  LN+    G   +A +LF +    + C P+ ++Y ++++     G +D A EL +EM 
Sbjct: 2   NCALNLLVRAGQHGQAVQLFRE----ERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMR 57

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           + G+   V     +I+ L KA R  D +  F         PD
Sbjct: 58  DRGIPPGVAVHNGVIKGLCKAGRFGDALGYFKTVAGTKCTPD 99


>gi|326491875|dbj|BAJ98162.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 628

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 98/353 (27%), Positives = 163/353 (46%), Gaps = 10/353 (2%)

Query: 135 DNTEEAFLRAITEIPHQPTRENALLILNSLKFWQKS------YFFFNWIKSQNLFPMETI 188
           DN   A L    E+ HQ  R +       ++   K+      Y FF+ ++ +   P +T+
Sbjct: 275 DNVHGA-LGLFEEMRHQYCRPDVFTYTELIRGLGKAGRLDEAYNFFHEMRREGCRP-DTV 332

Query: 189 FYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA-KRCNLFDEAIEWFER 247
             N  +  L    +     +L  EM +       +TY+TII    +  +   E   WFER
Sbjct: 333 LMNNMINFLGKAGRLDDAIKLFEEMETLRCIPSVVTYNTIIKALFESKSRVSEISSWFER 392

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M  +G+ P   TYS ++D + K+ + E+ + L E     G+ P P A+  L    G++  
Sbjct: 393 MKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKR 452

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
           YD    + QE+K      +  VY  +++ +GKAG+   A  LFDEM   G TP+     A
Sbjct: 453 YDLANELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVDLFDEMNRLGCTPNVYAYNA 512

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           L+    +A    +AL    RM+++    D   YN +LN  A  G  + A  +  +MK S 
Sbjct: 513 LMSGLARAGMLDEALTTMRRMQDHGCIPDINSYNIILNALAKTGGPDRAMGMLCNMKQSA 572

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK 480
             KPD  SY  +L      G  + A +L +EM+ +G   +++  + +++ +GK
Sbjct: 573 -IKPDAVSYNTVLGALSHAGMFEEAAKLMKEMNAIGFDYDLITYSSILEAIGK 624



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 91/359 (25%), Positives = 173/359 (48%), Gaps = 11/359 (3%)

Query: 151 QPTRE---NALLILNSLKFWQKSYFFFNWIKSQ-NLFPMETIFYNVTMKSL-RFGRQFQL 205
           QPT     + +++L     ++K +  +N + ++   FP +T+ Y+  + +  + GRQ   
Sbjct: 187 QPTAHAYNSMIIMLMHEGEYEKVHELYNEMSNEGQCFP-DTVTYSALISAFCKLGRQDSA 245

Query: 206 IEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
           I  L NEM  N ++     Y+ ++    + +    A+  FE M      PD  TY+ ++ 
Sbjct: 246 I-WLLNEMKDNGMQPTAKIYTMLMALLFKLDNVHGALGLFEEMRHQYCRPDVFTYTELIR 304

Query: 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325
              K+G+++E  + +      G +PD +  + +    G++G  D    + +EM++L   P
Sbjct: 305 GLGKAGRLDEAYNFFHEMRREGCRPDTVLMNNMINFLGKAGRLDDAIKLFEEMETLRCIP 364

Query: 326 NLVVYNTLLEAMGKA-GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384
           ++V YNT+++A+ ++  +     S F+ M  SG++P   T + LI  + K    + A+ L
Sbjct: 365 SVVTYNTIIKALFESKSRVSEISSWFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMML 424

Query: 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYS-YTAMLNIY 443
            E M E  +P     Y +L++        + A  LF+++K  + C   +   Y  M+   
Sbjct: 425 LEEMDEKGFPPCPAAYCSLIDALGKAKRYDLANELFQELK--ENCGSSSARVYAVMIKHL 482

Query: 444 GSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           G  G +D+A++LF+EM+ LG   NV     L+  L +A  +D+ +       D G  PD
Sbjct: 483 GKAGRLDDAVDLFDEMNRLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQDHGCIPD 541



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/351 (24%), Positives = 147/351 (41%), Gaps = 39/351 (11%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEI------ELDNI--- 223
           FF W   +  +  +T  Y   ++ L    Q+  + ++  EMV N +      EL +I   
Sbjct: 105 FFRWAARKRNYEHDTSTYMALIRCLEVVEQYGEMWKMIQEMVRNPVCVVTPMELSDIIRM 164

Query: 224 ---------------------------TYSTIITCAKRCNLFDEAIEWFERMYKTG-LMP 255
                                       Y+++I        +++  E +  M   G   P
Sbjct: 165 LGNAKMISKAVAIFYQIKARKCQPTAHAYNSMIIMLMHEGEYEKVHELYNEMSNEGQCFP 224

Query: 256 DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVL 315
           D VTYSA++  + K G+ +  + L      +G +P    +++L  +  +  +  G   + 
Sbjct: 225 DTVTYSALISAFCKLGRQDSAIWLLNEMKDNGMQPTAKIYTMLMALLFKLDNVHGALGLF 284

Query: 316 QEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA 375
           +EM+    +P++  Y  L+  +GKAG+   A + F EM   G  PD   +  +I   GKA
Sbjct: 285 EEMRHQYCRPDVFTYTELIRGLGKAGRLDEAYNFFHEMRREGCRPDTVLMNNMINFLGKA 344

Query: 376 RWAKDALELWERMRENKWPMDFILYNTLLN-MCADIGLVEEAERLFEDMKLSDYCKPDNY 434
               DA++L+E M   +     + YNT++  +      V E    FE MK S    P  +
Sbjct: 345 GRLDDAIKLFEEMETLRCIPSVVTYNTIIKALFESKSRVSEISSWFERMKGSG-ISPSPF 403

Query: 435 SYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
           +Y+ +++ +      + A+ L EEM E G          LI  LGKA+R D
Sbjct: 404 TYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYD 454



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/319 (22%), Positives = 137/319 (42%), Gaps = 2/319 (0%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  EM       D  TY+ +I    +    DEA  +F  M + G  PD V  + +++   
Sbjct: 283 LFEEMRHQYCRPDVFTYTELIRGLGKAGRLDEAYNFFHEMRREGCRPDTVLMNNMINFLG 342

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAF-SVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
           K+G++++ + L+E        P  + + +++  +F        I    + MK  G+ P+ 
Sbjct: 343 KAGRLDDAIKLFEEMETLRCIPSVVTYNTIIKALFESKSRVSEISSWFERMKGSGISPSP 402

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
             Y+ L++   K  +   A  L +EM E G  P      +LI   GKA+    A EL++ 
Sbjct: 403 FTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLANELFQE 462

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           ++EN       +Y  ++      G +++A  LF++M     C P+ Y+Y A+++     G
Sbjct: 463 LKENCGSSSARVYAVMIKHLGKAGRLDDAVDLFDEMNRLG-CTPNVYAYNALMSGLARAG 521

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCG 507
            +D A+     M + G   ++     ++  L K    D  + +        +KPD     
Sbjct: 522 MLDEALTTMRRMQDHGCIPDINSYNIILNALAKTGGPDRAMGMLCNMKQSAIKPDAVSYN 581

Query: 508 CLLSVVSLCETSEDVGKVI 526
            +L  +S     E+  K++
Sbjct: 582 TVLGALSHAGMFEEAAKLM 600



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 95/201 (47%), Gaps = 2/201 (0%)

Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
           P+  S + +M G +        +  ++K+   QP    YN+++  +   G+      L++
Sbjct: 155 PMELSDIIRMLGNAKMISKAVAIFYQIKARKCQPTAHAYNSMIIMLMHEGEYEKVHELYN 214

Query: 352 EMVESGLT-PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
           EM   G   PD  T +ALI  + K      A+ L   M++N       +Y  L+ +   +
Sbjct: 215 EMSNEGQCFPDTVTYSALISAFCKLGRQDSAIWLLNEMKDNGMQPTAKIYTMLMALLFKL 274

Query: 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG 470
             V  A  LFE+M+   YC+PD ++YT ++   G  G +D A   F EM   G   + + 
Sbjct: 275 DNVHGALGLFEEMR-HQYCRPDVFTYTELIRGLGKAGRLDEAYNFFHEMRREGCRPDTVL 333

Query: 471 CTCLIQCLGKARRIDDLVRVF 491
              +I  LGKA R+DD +++F
Sbjct: 334 MNNMINFLGKAGRLDDAIKLF 354



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/255 (21%), Positives = 104/255 (40%), Gaps = 42/255 (16%)

Query: 330 YNTLLEAMGKAGKPGLARSLFDEMVESGL---TPDEKTLTALIKIYGKARWAKDALELWE 386
           Y  L+  +    + G    +  EMV + +   TP E  L+ +I++ G A+    A+ ++ 
Sbjct: 122 YMALIRCLEVVEQYGEMWKMIQEMVRNPVCVVTPME--LSDIIRMLGNAKMISKAVAIFY 179

Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
           +++  K       YN+++ M    G  E+   L+ +M     C PD  +Y+A+++ +   
Sbjct: 180 QIKARKCQPTAHAYNSMIIMLMHEGEYEKVHELYNEMSNEGQCFPDTVTYSALISAFCKL 239

Query: 447 G-----------------------------------NVDNAIELFEEMSELGVAINVMGC 471
           G                                   NV  A+ LFEEM       +V   
Sbjct: 240 GRQDSAIWLLNEMKDNGMQPTAKIYTMLMALLFKLDNVHGALGLFEEMRHQYCRPDVFTY 299

Query: 472 TCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQ- 530
           T LI+ LGKA R+D+    F      G +PD  L   +++ +      +D  K+   ++ 
Sbjct: 300 TELIRGLGKAGRLDEAYNFFHEMRREGCRPDTVLMNNMINFLGKAGRLDDAIKLFEEMET 359

Query: 531 -QANPKLVAFLNLIE 544
            +  P +V +  +I+
Sbjct: 360 LRCIPSVVTYNTIIK 374


>gi|297817834|ref|XP_002876800.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322638|gb|EFH53059.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1010

 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 127/242 (52%), Gaps = 1/242 (0%)

Query: 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS 296
           + +EAI+ F +M +  + P   + + +L  +AK GK + V   ++  + +G KP    ++
Sbjct: 40  MVEEAIQCFSKMKRFRVFPKTRSCNGLLHKFAKLGKTDGVKRFFKDMIGAGAKPTVFTYN 99

Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356
           ++     + GD +  R + +EMK  G+ P+ V YN++++  GK G+       F+EM + 
Sbjct: 100 IMIDCMCKEGDVEAARGLFEEMKFRGLIPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDM 159

Query: 357 GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEA 416
              PD  T  ALI  + K       LE +  M+ N    + + Y+TL++     G++++A
Sbjct: 160 CCEPDVITYNALINCFCKFGKLPKGLEFFREMKRNGLKPNVVSYSTLVDAFCKEGMMQQA 219

Query: 417 ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
            + + DM+      P+ Y+YT++++ Y   GN+ +A  L  EM ++GV  NV+  T LI 
Sbjct: 220 IKFYVDMRRVGLV-PNEYTYTSLIDAYCKIGNLSDAFRLANEMLQVGVEWNVVTYTALID 278

Query: 477 CL 478
            L
Sbjct: 279 GL 280



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 96/387 (24%), Positives = 172/387 (44%), Gaps = 20/387 (5%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLA--NEMVSNEIELDNITYSTIIT 230
            F  +K + L P +T+ YN  +    FG+  +L + +    EM     E D ITY+ +I 
Sbjct: 117 LFEEMKFRGLIP-DTVTYNSMIDG--FGKVGRLDDTVCFFEEMKDMCCEPDVITYNALIN 173

Query: 231 CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
           C  +     + +E+F  M + GL P+ V+YS ++D + K G +++ +  Y      G  P
Sbjct: 174 CFCKFGKLPKGLEFFREMKRNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVP 233

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
           +   ++ L   + + G+      +  EM  +GV+ N+V Y  L++ +     P     L 
Sbjct: 234 NEYTYTSLIDAYCKIGNLSDAFRLANEMLQVGVEWNVVTYTALIDGLCGWENPTEGLHLL 293

Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN-KWPMDFILYNTLLNMCAD 409
           DEMVE  +     T   LI    K +    A++ + R+  +     +  +Y  +++    
Sbjct: 294 DEMVELDIKVTVVTFCVLIDGLCKNKLVSKAIDYFGRISNDFGLQANAAIYTAMIDGLCK 353

Query: 410 IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVM 469
              VE A  LFE M       PD  +YT++++     GNV  A+ L ++M E G+ ++++
Sbjct: 354 GNQVEAATTLFEQMAQKGLV-PDRTAYTSLMDGNFKQGNVLEALALRDKMVETGMKLDLL 412

Query: 470 GCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCL 529
             T L+  L    ++          I  G+ PD+ LC      +S+ +   ++G    C+
Sbjct: 413 AYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLC------ISVLKKHYELG----CI 462

Query: 530 QQA---NPKLVAFLNLIEDNSTGFENI 553
            +A      L+    L  DN     NI
Sbjct: 463 NEAVELQSYLMKHQLLTSDNDNALPNI 489



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 155/344 (45%), Gaps = 3/344 (0%)

Query: 160 ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIE 219
           +L  L   +++   F+ +K   +FP       +  K  + G+    +++   +M+    +
Sbjct: 34  VLIDLGMVEEAIQCFSKMKRFRVFPKTRSCNGLLHKFAKLGKT-DGVKRFFKDMIGAGAK 92

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
               TY+ +I C  +    + A   FE M   GL+PD VTY++++D + K G++++ +  
Sbjct: 93  PTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLIPDTVTYNSMIDGFGKVGRLDDTVCF 152

Query: 280 YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
           +E       +PD I ++ L   F + G         +EMK  G++PN+V Y+TL++A  K
Sbjct: 153 FEEMKDMCCEPDVITYNALINCFCKFGKLPKGLEFFREMKRNGLKPNVVSYSTLVDAFCK 212

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
            G    A   + +M   GL P+E T T+LI  Y K     DA  L   M +     + + 
Sbjct: 213 EGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDAYCKIGNLSDAFRLANEMLQVGVEWNVVT 272

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           Y  L++         E   L ++M   D  K    ++  +++       V  AI+ F  +
Sbjct: 273 YTALIDGLCGWENPTEGLHLLDEMVELDI-KVTVVTFCVLIDGLCKNKLVSKAIDYFGRI 331

Query: 460 S-ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           S + G+  N    T +I  L K  +++    +F     +G+ PD
Sbjct: 332 SNDFGLQANAAIYTAMIDGLCKGNQVEAATTLFEQMAQKGLVPD 375


>gi|193806393|sp|P0C7Q7.1|PPR38_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial; Flags: Precursor
          Length = 602

 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 157/317 (49%), Gaps = 1/317 (0%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + YN  +  +       L   L  +M    ++ D  TYSTII    R    D AI  F
Sbjct: 192 DVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLF 251

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           + M   G+    VTY++++    K+GK  +   L +  V+    P+ I F+VL  +F + 
Sbjct: 252 KEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKE 311

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G       + +EM + G+ PN++ YNTL++      +   A ++ D MV +  +PD  T 
Sbjct: 312 GKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTF 371

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
           T+LIK Y   +   D ++++  + +     + + Y+ L+      G ++ AE LF++M +
Sbjct: 372 TSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEM-V 430

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
           S    PD  +Y  +L+     G ++ A+E+FE++ +  + + ++  T +I+ + K  +++
Sbjct: 431 SHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVE 490

Query: 486 DLVRVFGVSIDRGVKPD 502
           D   +F     +GVKP+
Sbjct: 491 DAWNLFCSLPCKGVKPN 507



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 87/335 (25%), Positives = 157/335 (46%), Gaps = 7/335 (2%)

Query: 219 ELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS 278
           E D  T++T+I          EA+   +RM + G  PD VTY++I++   +SG     L 
Sbjct: 155 EPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALD 214

Query: 279 LYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMG 338
           L  +      K D   +S +       G  D    + +EM++ G++ ++V YN+L+  + 
Sbjct: 215 LLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLC 274

Query: 339 KAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFI 398
           KAGK      L  +MV   + P+  T   L+ ++ K    ++A EL++ M       + I
Sbjct: 275 KAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNII 334

Query: 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458
            YNTL++       + EA  +  D+ + + C PD  ++T+++  Y     VD+ +++F  
Sbjct: 335 TYNTLMDGYCMQNRLSEANNML-DLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRN 393

Query: 459 MSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCET 518
           +S+ G+  N +  + L+Q   ++ +I     +F   +  GV PD    G LL    LC+ 
Sbjct: 394 ISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLD--GLCDN 451

Query: 519 S--EDVGKVITCLQQANPKL--VAFLNLIEDNSTG 549
              E   ++   LQ++   L  V +  +IE    G
Sbjct: 452 GKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKG 486



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 122/259 (47%), Gaps = 1/259 (0%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           I YN  M       +      + + MV N+   D +T++++I         D+ ++ F  
Sbjct: 334 ITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRN 393

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           + K GL+ + VTYS ++  + +SGK++    L++  V+ G  PD + + +L     ++G 
Sbjct: 394 ISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGK 453

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
            +    + ++++   +   +V+Y T++E M K GK   A +LF  +   G+ P+  T T 
Sbjct: 454 LEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTV 513

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           +I    K     +A  L  +M E+    +   YNTL+      G +  + +L E+MK   
Sbjct: 514 MISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCG 573

Query: 428 YCKPDNYSYTAMLNIYGSG 446
           +   D  S   ++++  SG
Sbjct: 574 F-SADASSIKMVIDMLLSG 591



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 51/247 (20%), Positives = 113/247 (45%), Gaps = 1/247 (0%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           + +S   +   R   F+  +++ +++   G+  +  T + +++ + +  K     S+  +
Sbjct: 89  VDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGK 148

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
            +  G++PD   F+ L K     G       ++  M   G QP++V YN+++  + ++G 
Sbjct: 149 VMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGD 208

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
             LA  L  +M E  +  D  T + +I    +      A+ L++ M         + YN+
Sbjct: 209 TSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNS 268

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
           L+      G   +   L +DM +S    P+  ++  +L+++   G +  A EL++EM   
Sbjct: 269 LVRGLCKAGKWNDGALLLKDM-VSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITR 327

Query: 463 GVAINVM 469
           G++ N++
Sbjct: 328 GISPNII 334



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 95/197 (48%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           + Y++ ++      + +L E+L  EMVS+ +  D +TY  ++         ++A+E FE 
Sbjct: 404 VTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFED 463

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           + K+ +    V Y+ I++   K GKVE+  +L+      G KP+ + ++V+     + G 
Sbjct: 464 LQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGS 523

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
                 +L++M+  G  PN   YNTL+ A  + G    +  L +EM   G + D  ++  
Sbjct: 524 LSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKM 583

Query: 368 LIKIYGKARWAKDALEL 384
           +I +       K  L++
Sbjct: 584 VIDMLLSGELDKSFLDM 600



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 112/242 (46%), Gaps = 6/242 (2%)

Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
           S I+D+     K ++ ++L++  + S   P  + FS        +  ++ +    ++++ 
Sbjct: 62  SGIVDI-----KKDDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLEL 116

Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380
            G+  N+   N ++    +  K   A S+  ++++ G  PD  T   LIK         +
Sbjct: 117 NGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSE 176

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
           A+ L +RM EN    D + YN+++N     G    A  L   M+  +  K D ++Y+ ++
Sbjct: 177 AVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNV-KADVFTYSTII 235

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
           +     G +D AI LF+EM   G+  +V+    L++ L KA + +D   +    + R + 
Sbjct: 236 DSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIV 295

Query: 501 PD 502
           P+
Sbjct: 296 PN 297



 Score = 42.0 bits (97), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 30/154 (19%), Positives = 68/154 (44%), Gaps = 1/154 (0%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F  + S  + P + + Y + +  L    + +   ++  ++  ++++L  + Y+TII   
Sbjct: 425 LFQEMVSHGVLP-DVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGM 483

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +    ++A   F  +   G+ P+ +TY+ ++    K G + E   L  +    G  P+ 
Sbjct: 484 CKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPND 543

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
             ++ L +     GD      +++EMKS G   +
Sbjct: 544 CTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSAD 577


>gi|297733951|emb|CBI15198.3| unnamed protein product [Vitis vinifera]
          Length = 948

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 89/319 (27%), Positives = 144/319 (45%), Gaps = 36/319 (11%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           +L +EM+  +I    + Y+ +I      +   EA   F  M  +G++P+  TY+ ++D Y
Sbjct: 214 RLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGY 273

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            K   V++ L LY+  +  G  P+ + F +L     ++ +    R  L +M S GV PN+
Sbjct: 274 CKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNI 333

Query: 328 VVYNTLLEAMGKAGK---------------------------PGL--------ARSLFDE 352
            VYN L++   KAG                             GL        A  L  E
Sbjct: 334 FVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQE 393

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M + G  P+  T   LI  Y K    + A+E+  +M E     + I ++TL++     G 
Sbjct: 394 MKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGK 453

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
           +E A  L+ +M +     PD  +YTA+++ +   GN   A  L +EM E G+  NV   +
Sbjct: 454 MEAAMGLYTEMVIKGLL-PDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLS 512

Query: 473 CLIQCLGKARRIDDLVRVF 491
           CLI  L K  RI D +++F
Sbjct: 513 CLIDGLCKDGRISDAIKLF 531



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 147/312 (47%), Gaps = 1/312 (0%)

Query: 191 NVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYK 250
           N+ +  L    +F  + ++  +MV+     + +TY T+I    R   F +A   F+ M +
Sbjct: 162 NMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIE 221

Query: 251 TGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDG 310
             + P  V Y+ ++       ++ E  S++     SG  P+   ++ +   + +      
Sbjct: 222 KKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKK 281

Query: 311 IRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK 370
              + QEM   G+ PN+V +  L++ + K  +   AR    +M   G+ P+      LI 
Sbjct: 282 ALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLID 341

Query: 371 IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCK 430
            Y KA    +AL L   + +++   D   Y+ L+     +  +EEA+ L ++MK   +  
Sbjct: 342 GYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFL- 400

Query: 431 PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRV 490
           P+  +Y  +++ Y   GN++ AIE+  +M+E G+  N++  + LI    KA +++  + +
Sbjct: 401 PNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGL 460

Query: 491 FGVSIDRGVKPD 502
           +   + +G+ PD
Sbjct: 461 YTEMVIKGLLPD 472



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 114/263 (43%), Gaps = 4/263 (1%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
            +  +I       L +EA+ W    YK  ++P     + +LD   K G+ + +  +Y   
Sbjct: 128 VFGVLIIAFSEMGLVEEAL-WV--YYKMDVLPAMQACNMVLDGLVKKGRFDTMWKVYGDM 184

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
           VA G  P+ + +  L       GD+     +  EM    + P +V+Y  L+  +    + 
Sbjct: 185 VARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRI 244

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
             A S+F  M  SG+ P+  T   ++  Y K    K ALEL++ M  +    + + +  L
Sbjct: 245 SEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGIL 304

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           ++       +  A +   DM  S    P+ + Y  +++ Y   GN+  A+ L  E+ +  
Sbjct: 305 IDGLCKTDEMVSARKFLIDMA-SFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHE 363

Query: 464 VAINVMGCTCLIQCLGKARRIDD 486
           +  +V   + LI+ L    R+++
Sbjct: 364 ILPDVFTYSILIKGLCGVDRMEE 386



 Score = 40.4 bits (93), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 29/137 (21%), Positives = 62/137 (45%), Gaps = 13/137 (9%)

Query: 320 SLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAK 379
           + G +P + +  +L+      G    A ++FDE+    L     + T++I  Y   +   
Sbjct: 659 NFGFEPIIFLQTSLISMYSATGNVADAHNMFDEIPSKNLI----SWTSVISAYVDNQRPN 714

Query: 380 DALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL----SDYCKPDNYS 435
            AL+L+ +M+ +    D +     L+ CAD+G ++  E +   ++     +D C  +   
Sbjct: 715 KALQLFRQMQMDDVQPDIVTVTVALSACADLGALDMGEWIHAYIRHRGLDTDLCLNN--- 771

Query: 436 YTAMLNIYGSGGNVDNA 452
             +++N+Y   G +  A
Sbjct: 772 --SLINMYSKCGEIGTA 786


>gi|115450907|ref|NP_001049054.1| Os03g0162900 [Oryza sativa Japonica Group]
 gi|108706330|gb|ABF94125.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113547525|dbj|BAF10968.1| Os03g0162900 [Oryza sativa Japonica Group]
 gi|222624238|gb|EEE58370.1| hypothetical protein OsJ_09514 [Oryza sativa Japonica Group]
          Length = 823

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 143/309 (46%), Gaps = 29/309 (9%)

Query: 159 LILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEI 218
           +IL   K W+++   FNW + +    +  I YNV + ++   R++ L+ +L +EM S  +
Sbjct: 113 IILKEQKDWRRAVEIFNWFRRRRRHEVNVIHYNVVLCAVGRARRWDLVARLWHEMHSGGV 172

Query: 219 ELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS 278
             DN TY T+I    +      A+ W   M K GL+PDE+T S +L V+ K+G+ E+   
Sbjct: 173 APDNSTYGTLIDVHCKGGRERMALLWLGDMIKRGLLPDEITMSIVLQVHKKAGEYEKAEL 232

Query: 279 LYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMG 338
            ++R     W  +        KM G                      +L  YNTL++  G
Sbjct: 233 FFKR-----WSLESDV-----KMKGHPC------------------YSLYTYNTLIDTYG 264

Query: 339 KAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFI 398
           KAG+       F++M+  G++P+  T   +I ++GK R  +    L   M E +   D  
Sbjct: 265 KAGQLEKVSDTFNQMLREGVSPNVVTFNTMIHVWGKHRRMEQVASLMRTMEEFQCLPDTR 324

Query: 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458
            YN L+++  +I  ++ AE  F  MK  +   PD  S   +L  Y   G V  A  L +E
Sbjct: 325 TYNILISLYREINDIDVAEYYFRKMKAENLL-PDVVSCRTLLYGYSIKGMVTEAQALLKE 383

Query: 459 MSELGVAIN 467
           M E  + I+
Sbjct: 384 MYERNMVID 392



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/266 (22%), Positives = 134/266 (50%), Gaps = 2/266 (0%)

Query: 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
            DEA E  + M + G++PD +TYS+++ + + +   E+ L    +  A+    D + +SV
Sbjct: 475 LDEACEIADGMERYGILPDYLTYSSLIHLMSTAKLPEKALYYLRKMQAAKLLIDCVPYSV 534

Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
           +   F ++G+   +  + +EM + G+Q +  VY+ L++A  + G    A + F  + ++G
Sbjct: 535 VISCFAKNGNLHMVDCLFREMITSGIQADTYVYSILIDAYAEVGDVQKAEAYFGLLKKAG 594

Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417
           L        +LIK+Y K  +  +A + ++ ++      +    N ++++ +D  +V+EA 
Sbjct: 595 LCESATIYNSLIKLYTKVVYLAEAQKTYKLLKSLNADTNLYASNCMIDLYSDHCMVKEAR 654

Query: 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
            +FE++K++   K + +S+  M+ +Y      D A  + ++M   G     +    +IQ 
Sbjct: 655 EIFENLKVTG--KANEFSHAMMVCLYKKIARFDEAHRISKKMQASGFLTQALSYNSVIQM 712

Query: 478 LGKARRIDDLVRVFGVSIDRGVKPDD 503
                R++D +++F   +     P+D
Sbjct: 713 YVSGGRMEDALKIFQKMLASNTPPND 738



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 86/427 (20%), Positives = 162/427 (37%), Gaps = 52/427 (12%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           FN +  + + P   + +N  +      R+ + +  L   M   +   D  TY+ +I+  +
Sbjct: 276 FNQMLREGVSP-NVVTFNTMIHVWGKHRRMEQVASLMRTMEEFQCLPDTRTYNILISLYR 334

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
             N  D A  +F +M    L+PD V+   +L  Y+  G V E  +L +         D  
Sbjct: 335 EINDIDVAEYYFRKMKAENLLPDVVSCRTLLYGYSIKGMVTEAQALLKEMYERNMVIDEY 394

Query: 294 AFSVLGKMFGESGDYDGIRYVLQE----MKSLGVQPNLVVYNTLLEAMGKAGKPGLARSL 349
             S + +M+ ++G       +L++     +    Q N   ++  ++A G+ G   LA   
Sbjct: 395 TQSAVTRMYVDAG-------MLEQAWCWFEKFNYQLNSECFSANIDAFGERGHILLAEKA 447

Query: 350 FDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCAD 409
           F   ++  +         +IK YG      +A E+ + M       D++ Y++L+++ + 
Sbjct: 448 FMCCIKRKML-STCVCNVMIKAYGLVEKLDEACEIADGMERYGILPDYLTYSSLIHLMST 506

Query: 410 IGLVEEAERLFEDM---KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
             L E+A      M   KL   C P    Y+ +++ +   GN+     LF EM   G+  
Sbjct: 507 AKLPEKALYYLRKMQAAKLLIDCVP----YSVVISCFAKNGNLHMVDCLFREMITSGIQA 562

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           +    + LI    +   +      FG                LL    LCE++     +I
Sbjct: 563 DTYVYSILIDAYAEVGDVQKAEAYFG----------------LLKKAGLCESATIYNSLI 606

Query: 527 TCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLN 586
               +        + L E   T           ++K    D      NC+ID+  +  + 
Sbjct: 607 KLYTKV-------VYLAEAQKT---------YKLLKSLNADTNLYASNCMIDLYSDHCMV 650

Query: 587 ERAHELL 593
           + A E+ 
Sbjct: 651 KEAREIF 657


>gi|224089797|ref|XP_002308815.1| predicted protein [Populus trichocarpa]
 gi|222854791|gb|EEE92338.1| predicted protein [Populus trichocarpa]
          Length = 129

 Score =  123 bits (309), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 52/126 (41%), Positives = 86/126 (68%)

Query: 263 ILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG 322
           ++D Y ++G VE+ LSLY+R     W+ D   FS L +++  +G++DG   V +EMK+LG
Sbjct: 1   MIDSYGRAGNVEKALSLYDRARTGEWRLDATTFSTLIRIYKVAGNFDGCLNVYEEMKALG 60

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382
           V+PNLV+YN LL+AMG+A +P   +  + ++++SGL+P   T  AL+  YG+AR+  DA 
Sbjct: 61  VKPNLVIYNILLDAMGRAKRPWQVKKFYQDIIDSGLSPSFVTYAALLHAYGRARYGDDAF 120

Query: 383 ELWERM 388
           +++ +M
Sbjct: 121 KIYRKM 126



 Score = 51.2 bits (121), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 57/115 (49%), Gaps = 1/115 (0%)

Query: 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG 470
           G VE+A  L++  +  ++ + D  +++ ++ IY   GN D  + ++EEM  LGV  N++ 
Sbjct: 9   GNVEKALSLYDRARTGEW-RLDATTFSTLIRIYKVAGNFDGCLNVYEEMKALGVKPNLVI 67

Query: 471 CTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKV 525
              L+  +G+A+R   + + +   ID G+ P       LL         +D  K+
Sbjct: 68  YNILLDAMGRAKRPWQVKKFYQDIIDSGLSPSFVTYAALLHAYGRARYGDDAFKI 122



 Score = 50.4 bits (119), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 61/127 (48%), Gaps = 1/127 (0%)

Query: 333 LLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENK 392
           ++++ G+AG    A SL+D         D  T + LI+IY  A      L ++E M+   
Sbjct: 1   MIDSYGRAGNVEKALSLYDRARTGEWRLDATTFSTLIRIYKVAGNFDGCLNVYEEMKALG 60

Query: 393 WPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNA 452
              + ++YN LL+         + ++ ++D+ +     P   +Y A+L+ YG     D+A
Sbjct: 61  VKPNLVIYNILLDAMGRAKRPWQVKKFYQDI-IDSGLSPSFVTYAALLHAYGRARYGDDA 119

Query: 453 IELFEEM 459
            +++ +M
Sbjct: 120 FKIYRKM 126



 Score = 48.5 bits (114), Expect = 0.014,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 45/91 (49%)

Query: 215 SNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVE 274
           + E  LD  T+ST+I   K    FD  +  +E M   G+ P+ V Y+ +LD   ++ +  
Sbjct: 23  TGEWRLDATTFSTLIRIYKVAGNFDGCLNVYEEMKALGVKPNLVIYNILLDAMGRAKRPW 82

Query: 275 EVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           +V   Y+  + SG  P  + ++ L   +G +
Sbjct: 83  QVKKFYQDIIDSGLSPSFVTYAALLHAYGRA 113


>gi|255584082|ref|XP_002532784.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527472|gb|EEF29603.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 487

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 141/299 (47%), Gaps = 1/299 (0%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + YN  + +      F     L N M    I  D +TY+++I  A R  L  E++  F
Sbjct: 71  DVVTYNTLIDAYSRFVSFNAAYSLLNRMREASISPDVVTYNSLIAGAARNCLLLESLNLF 130

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           + M   G++PD  +Y+ ++  + K GK EE   +  +    G  P P  F+++     ++
Sbjct: 131 DEMLNMGIVPDVWSYNTLMHCFFKLGKAEEANEVLRQIFGHGLSPCPTTFNIMINGLCKN 190

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G       + + +K  G  P L+ YN L+  + K  +   ARS+  E+  SG  P+  T 
Sbjct: 191 GFTSNALMLFRSLKQHGFVPQLITYNILINGLCKDRRLRAARSMLKELETSGYVPNAITY 250

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
           T ++K   ++R  K  LE+ + M +  +  D   Y T++ +    G +EEA      M +
Sbjct: 251 TTVMKFCFRSRRFKQGLEILQEMIDKGYTFDGFAYCTVVGVLIKTGRLEEATEYMRQM-I 309

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484
            +  + D  SY  ++N+Y   GN++ A +L +E+ + G+  +    T LI  + KA  I
Sbjct: 310 KNGIEHDLASYNTLINLYCKQGNLEAAYQLLDEIEKEGLQCDEYTHTILINWMCKAGNI 368



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 78/342 (22%), Positives = 135/342 (39%), Gaps = 57/342 (16%)

Query: 125 KLFARKLNDCDNTEEAFLRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFP 184
           ++F   L+ C  T   F   I  +       NAL++  SLK              Q+ F 
Sbjct: 167 QIFGHGLSPCPTT---FNIMINGLCKNGFTSNALMLFRSLK--------------QHGFV 209

Query: 185 METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEW 244
            + I YN+ +  L   R+ +    +  E+ ++    + ITY+T++    R   F + +E 
Sbjct: 210 PQLITYNILINGLCKDRRLRAARSMLKELETSGYVPNAITYTTVMKFCFRSRRFKQGLEI 269

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
            + M   G   D   Y  ++ V  K+G++EE                             
Sbjct: 270 LQEMIDKGYTFDGFAYCTVVGVLIKTGRLEE----------------------------- 300

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
                   Y+ Q +K+ G++ +L  YNTL+    K G    A  L DE+ + GL  DE T
Sbjct: 301 -----ATEYMRQMIKN-GIEHDLASYNTLINLYCKQGNLEAAYQLLDEIEKEGLQCDEYT 354

Query: 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
            T LI    KA     A    + M    +    +  N +++     G ++ A +LFE MK
Sbjct: 355 HTILINWMCKAGNILGARRHMQHMNMMGFDSCLVALNCMVDGLCKNGQIDHAVKLFESMK 414

Query: 425 LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
           +      D+++Y+++++     G    A +L       G+ I
Sbjct: 415 MR-----DSFTYSSLVHNLCKNGRFHRASKLLLSCLRSGMKI 451


>gi|449484944|ref|XP_004157025.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g16010-like [Cucumis sativus]
          Length = 637

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 104/382 (27%), Positives = 166/382 (43%), Gaps = 39/382 (10%)

Query: 158 LLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVS-N 216
           L IL   K   K+   F  IK +   P  T+ YN  +  L      + I +L NE+ S  
Sbjct: 166 LKILGKAKMVNKALSVFYQIKGRKCNPTATV-YNTLILMLMHEGHHEKIHELYNEICSEG 224

Query: 217 EIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV 276
               D ITYS +I+   +   +D A   F+ M + GL P E  Y+ IL +Y K  KVE  
Sbjct: 225 NCSPDTITYSALISAFGKLERYDFAFRLFDEMKENGLHPTEKIYTTILAMYFKLNKVEAA 284

Query: 277 LSLYE----RGVA-------------------------------SGWKPDPIAFSVLGKM 301
           L L E    +G A                                G KPD +  + L  +
Sbjct: 285 LRLVEEMKGKGCAPTVFTYTELIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLINNLINI 344

Query: 302 FGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSL-FDEMVESGLTP 360
            G +G  +    +  +M SL   PN+V YNT+++A+ ++  P    +L F++M  +G+ P
Sbjct: 345 LGRAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFESKAPASEAALWFEKMKANGIAP 404

Query: 361 DEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLF 420
              T   LI  + K    + AL L E M E  +P     Y +L++        E A  LF
Sbjct: 405 SSFTYAILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAANELF 464

Query: 421 EDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK 480
           +++K  +  +     Y  M+  +G+ G + +A++LF E  +LG + +V     L+  + +
Sbjct: 465 QELK-ENCGRSSARVYAVMIKHFGNCGRLSDAVDLFCEXEKLGCSPDVYTYNALMSGMIR 523

Query: 481 ARRIDDLVRVFGVSIDRGVKPD 502
           A  ID+   +     + G  PD
Sbjct: 524 AGMIDEAHSLMRNMRENGCTPD 545



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 127/263 (48%), Gaps = 2/263 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D+ TY  +I C +   L DE     + M ++        +S IL +  K+  V + LS++
Sbjct: 123 DSTTYMALIRCLEESGLVDEMWRTIQDMIRSPCSVGPAEWSEILKILGKAKMVNKALSVF 182

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG-VQPNLVVYNTLLEAMGK 339
            +       P    ++ L  M    G ++ I  +  E+ S G   P+ + Y+ L+ A GK
Sbjct: 183 YQIKGRKCNPTATVYNTLILMLMHEGHHEKIHELYNEICSEGNCSPDTITYSALISAFGK 242

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
             +   A  LFDEM E+GL P EK  T ++ +Y K    + AL L E M+          
Sbjct: 243 LERYDFAFRLFDEMKENGLHPTEKIYTTILAMYFKLNKVEAALRLVEEMKGKGCAPTVFT 302

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           Y  L+     +G V++A  LF +M L D CKPD      ++NI G  G +++A++LF +M
Sbjct: 303 YTELIKGLGKVGRVDDAYSLFFNM-LKDGCKPDVVLINNLINILGRAGRLEDALKLFGKM 361

Query: 460 SELGVAINVMGCTCLIQCLGKAR 482
             L  A NV+    +I+ + +++
Sbjct: 362 DSLQCAPNVVTYNTVIKAIFESK 384



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 141/310 (45%), Gaps = 4/310 (1%)

Query: 172 FFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITC 231
            FFN +K     P   +  N+     R GR    + +L  +M S +   + +TY+T+I  
Sbjct: 322 LFFNMLK-DGCKPDVVLINNLINILGRAGRLEDAL-KLFGKMDSLQCAPNVVTYNTVIKA 379

Query: 232 AKRCNL-FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
                    EA  WFE+M   G+ P   TY+ ++D + K+ +VE+ L L E     G+ P
Sbjct: 380 IFESKAPASEAALWFEKMKANGIAPSSFTYAILIDGFCKTNRVEKALLLLEEMDEKGFPP 439

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
            P A+  L    G +  Y+    + QE+K    + +  VY  +++  G  G+   A  LF
Sbjct: 440 CPAAYCSLIDSLGRAKRYEAANELFQELKENCGRSSARVYAVMIKHFGNCGRLSDAVDLF 499

Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
            E  + G +PD  T  AL+    +A    +A  L   MREN    D   +N +LN  A  
Sbjct: 500 CEXEKLGCSPDVYTYNALMSGMIRAGMIDEAHSLMRNMRENGCTPDIKSHNIILNGLAKT 559

Query: 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG 470
           G  + A  +F  MK S+   PD  SY  +L+     G  + A +L  EM   G   + + 
Sbjct: 560 GGPKRAIEMFTKMKESEI-MPDAVSYNTILSCLSRAGMFEMAAKLMREMKLKGFEYDSIT 618

Query: 471 CTCLIQCLGK 480
            + +++ +GK
Sbjct: 619 YSSILEAVGK 628



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 117/238 (49%), Gaps = 2/238 (0%)

Query: 256 DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVL 315
           D  TY A++    +SG V+E+    +  + S     P  +S + K+ G++   +    V 
Sbjct: 123 DSTTYMALIRCLEESGLVDEMWRTIQDMIRSPCSVGPAEWSEILKILGKAKMVNKALSVF 182

Query: 316 QEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG-LTPDEKTLTALIKIYGK 374
            ++K     P   VYNTL+  +   G       L++E+   G  +PD  T +ALI  +GK
Sbjct: 183 YQIKGRKCNPTATVYNTLILMLMHEGHHEKIHELYNEICSEGNCSPDTITYSALISAFGK 242

Query: 375 ARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNY 434
                 A  L++ M+EN       +Y T+L M   +  VE A RL E+MK    C P  +
Sbjct: 243 LERYDFAFRLFDEMKENGLHPTEKIYTTILAMYFKLNKVEAALRLVEEMK-GKGCAPTVF 301

Query: 435 SYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFG 492
           +YT ++   G  G VD+A  LF  M + G   +V+    LI  LG+A R++D +++FG
Sbjct: 302 TYTELIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLINNLINILGRAGRLEDALKLFG 359



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 112/275 (40%), Gaps = 41/275 (14%)

Query: 311 IRYVLQEMKSLG----VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
           IR  +Q  K  G     Q +   Y  L+  + ++G          +M+ S  +      +
Sbjct: 104 IRAKIQFFKWAGKRQHFQHDSTTYMALIRCLEESGLVDEMWRTIQDMIRSPCSVGPAEWS 163

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
            ++KI GKA+    AL ++ +++  K      +YNTL+ M    G  E+   L+ ++   
Sbjct: 164 EILKILGKAKMVNKALSVFYQIKGRKCNPTATVYNTLILMLMHEGHHEKIHELYNEICSE 223

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV---------------------- 464
             C PD  +Y+A+++ +G     D A  LF+EM E G+                      
Sbjct: 224 GNCSPDTITYSALISAFGKLERYDFAFRLFDEMKENGLHPTEKIYTTILAMYFKLNKVEA 283

Query: 465 -------------AINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
                        A  V   T LI+ LGK  R+DD   +F   +  G KPD  L   L++
Sbjct: 284 ALRLVEEMKGKGCAPTVFTYTELIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLINNLIN 343

Query: 512 VVSLCETSEDVGKVITCLQ--QANPKLVAFLNLIE 544
           ++      ED  K+   +   Q  P +V +  +I+
Sbjct: 344 ILGRAGRLEDALKLFGKMDSLQCAPNVVTYNTVIK 378


>gi|255661218|gb|ACU25778.1| pentatricopeptide repeat-containing protein [Casselia glaziovii]
          Length = 426

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/290 (29%), Positives = 148/290 (51%), Gaps = 1/290 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D  TYST+IT   +   FD+A+ W ++M +  +  D V YS ++++  K     + +S++
Sbjct: 8   DRYTYSTLITHFGKEGRFDDALSWLQKMEEDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
            R   SG  PD +A++ +  +FG++  +   R ++ EM++ GV PN + Y+TLL    + 
Sbjct: 68  SRLKRSGITPDLVAYNSMINVFGKAKLFKEARSLIGEMRTAGVMPNTISYSTLLTMYVEN 127

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
            K   A S+F EM E   + D  T   +I +YG+   AK+A +L+   R+ +   + + Y
Sbjct: 128 KKFIEALSVFAEMREIQCSLDLITCNIMIDVYGQLGMAKEADKLFWGXRKMEIEPNVVSY 187

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           NTLL +  D  L  EA  LF  M+  +  + +  +Y  M+ IYG     + A  L +EM 
Sbjct: 188 NTLLRVYGDAELFGEAIHLFRLMQRKN-IEQNVVTYNTMMMIYGKTLEHEKANNLIQEMQ 246

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
             G+  N +  + +I   GK  ++D    +F      G++ D  L   ++
Sbjct: 247 NRGIEPNTITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQVLYQTMI 296



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 78/345 (22%), Positives = 157/345 (45%), Gaps = 40/345 (11%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D + Y+++I    +  LF EA      M   G+MP+ ++YS +L +Y ++ K  E LS++
Sbjct: 78  DLVAYNSMINVFGKAKLFKEARSLIGEMRTAGVMPNTISYSTLLTMYVENKKFIEALSVF 137

Query: 281 -----------------------ERGVASG-----W-------KPDPIAFSVLGKMFGES 305
                                  + G+A       W       +P+ ++++ L +++G++
Sbjct: 138 AEMREIQCSLDLITCNIMIDVYGQLGMAKEADKLFWGXRKMEIEPNVVSYNTLLRVYGDA 197

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
             +    ++ + M+   ++ N+V YNT++   GK  +   A +L  EM   G+ P+  T 
Sbjct: 198 ELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANNLIQEMQNRGIEPNTITY 257

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
           + +I I+GK      A  L++++R +   +D +LY T++      GLV  A+RL  ++K 
Sbjct: 258 STIISIWGKVGKLDRAAMLFQKLRSSGIEIDQVLYQTMIITYERAGLVAHAKRLLHELK- 316

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
               +PDN      ++I    G ++ A  +F +  E G   ++     +I    K ++  
Sbjct: 317 ----RPDNIPRDTAIHILAGAGRIEEATWVFRQAIEAGEVKDITVFEHMIDLFSKYKKYS 372

Query: 486 DLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQ 530
           +++ VF      G  PD R+   +L+     +  +   +V   +Q
Sbjct: 373 NIIEVFDKMRGIGYFPDSRVIALVLNAYGKLQEFDKANEVYMEMQ 417



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 129/261 (49%), Gaps = 1/261 (0%)

Query: 252 GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGI 311
            L PD  TYS ++  + K G+ ++ LS  ++        D + +S L ++  +  DY   
Sbjct: 4   ALSPDRYTYSTLITHFGKEGRFDDALSWLQKMEEDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 312 RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371
             +   +K  G+ P+LV YN+++   GKA     ARSL  EM  +G+ P+  + + L+ +
Sbjct: 64  ISIFSRLKRSGITPDLVAYNSMINVFGKAKLFKEARSLIGEMRTAGVMPNTISYSTLLTM 123

Query: 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
           Y + +   +AL ++  MRE +  +D I  N ++++   +G+ +EA++LF   +  +  +P
Sbjct: 124 YVENKKFIEALSVFAEMREIQCSLDLITCNIMIDVYGQLGMAKEADKLFWGXRKME-IEP 182

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           +  SY  +L +YG       AI LF  M    +  NV+    ++   GK    +    + 
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANNLI 242

Query: 492 GVSIDRGVKPDDRLCGCLLSV 512
               +RG++P+      ++S+
Sbjct: 243 QEMQNRGIEPNTITYSTIISI 263



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 86/189 (45%), Gaps = 3/189 (1%)

Query: 357 GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEA 416
            L+PD  T + LI  +GK     DAL   ++M E++ P D +LY+ L+ +   +    +A
Sbjct: 4   ALSPDRYTYSTLITHFGKEGRFDDALSWLQKMEEDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 417 ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
             +F  +K S    PD  +Y +M+N++G       A  L  EM   GV  N +  + L+ 
Sbjct: 64  ISIFSRLKRSG-ITPDLVAYNSMINVFGKAKLFKEARSLIGEMRTAGVMPNTISYSTLLT 122

Query: 477 CLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQ--QANP 534
              + ++  + + VF    +     D   C  ++ V      +++  K+    +  +  P
Sbjct: 123 MYVENKKFIEALSVFAEMREIQCSLDLITCNIMIDVYGQLGMAKEADKLFWGXRKMEIEP 182

Query: 535 KLVAFLNLI 543
            +V++  L+
Sbjct: 183 NVVSYNTLL 191


>gi|218191892|gb|EEC74319.1| hypothetical protein OsI_09597 [Oryza sativa Indica Group]
          Length = 1167

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 86/365 (23%), Positives = 181/365 (49%), Gaps = 4/365 (1%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           ++++ F   ++   L P +   Y   +  L   R+    + L +EM   E++ + + Y+ 
Sbjct: 169 EEAFGFKKDMEDYGLVP-DGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYAN 227

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           +I    R    DEA +  + M   G+ P+++TY  ++    K G+++    L ++ V   
Sbjct: 228 LIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDS 287

Query: 288 WKPDPIAFS-VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
            +PD I ++ ++   F      D  R +L EM++ G+ PN+  Y+ ++  + ++G+P  A
Sbjct: 288 HRPDTITYNLIIEGHFRHHNKKDAFR-LLSEMENAGISPNVYTYSIMIHGLCQSGEPEKA 346

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
             L +EM   GL P+      LI  Y +      A E++++M +     D   YN+L+  
Sbjct: 347 SDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFG 406

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
            + +G VEE+ + F  M+      P+ ++Y+ +++ Y   G++++A +L + M + G+  
Sbjct: 407 LSKVGRVEESTKYFAQMQERGLL-PNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKP 465

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           N +    L++   K+  I+ +   F   +D+GV  D+R+ G L+  +S     E   +V+
Sbjct: 466 NDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVL 525

Query: 527 TCLQQ 531
           + +++
Sbjct: 526 SEIEK 530



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 148/303 (48%), Gaps = 1/303 (0%)

Query: 201 RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTY 260
           R+F   +++  EM      L+ +TY+ +I    R    +EA  + + M   GL+PD  TY
Sbjct: 131 REFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTY 190

Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
            A+++   KS +  E  +L +    +  KP+ + ++ L   F   G+ D    +++EM +
Sbjct: 191 GALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVA 250

Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380
            GVQPN + Y+ L+  + K G+   A  L  +MV     PD  T   +I+ + +    KD
Sbjct: 251 AGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNKKD 310

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
           A  L   M       +   Y+ +++     G  E+A  L E+M  +   KP+ + Y  ++
Sbjct: 311 AFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMT-TKGLKPNAFVYAPLI 369

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
           + Y   GNV  A E+F++M+++ V  ++     LI  L K  R+++  + F    +RG+ 
Sbjct: 370 SGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLL 429

Query: 501 PDD 503
           P++
Sbjct: 430 PNE 432



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 84/355 (23%), Positives = 160/355 (45%), Gaps = 13/355 (3%)

Query: 147 EIPHQPTRENALLIL---NSLKFW-------QKSYFFFNWIKSQNLFPMETIFYNVTMKS 196
           EI  + T+ N L  L   NSL F        ++S  +F  ++ + L P E  +  +    
Sbjct: 383 EIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGY 442

Query: 197 LRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPD 256
           L+ G   +  EQL   M+   ++ +++ Y  ++    + +  ++    F+ M   G+M D
Sbjct: 443 LKNG-DLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLD 501

Query: 257 EVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQ 316
              Y  ++   + SG +E    +      +G  PD   +S L     ++ D +    +L 
Sbjct: 502 NRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADREKAFGILD 561

Query: 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
           EM   GV PN+V YN L++ + K+G    AR++F+ ++  GL P+  T T+LI    K  
Sbjct: 562 EMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVG 621

Query: 377 WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY 436
              +A  L+  M       D  +Y+ L   C+  G +E+A  L E+M L  +      S+
Sbjct: 622 DISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHASIS--SF 679

Query: 437 TAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
             +++ +   G +   ++L   +   G+  N +    +I  L +A ++ ++  +F
Sbjct: 680 NNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIF 734



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 140/318 (44%), Gaps = 7/318 (2%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           I Y+  ++ L    Q      L  +MV +    D ITY+ II    R +   +A      
Sbjct: 258 ITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRLLSE 317

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M   G+ P+  TYS ++    +SG+ E+   L E     G KP+   ++ L   +   G+
Sbjct: 318 MENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGN 377

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
                 +  +M  + V P+L  YN+L+  + K G+   +   F +M E GL P+E T + 
Sbjct: 378 VSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSG 437

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           LI  Y K    + A +L +RM +     + ++Y  LL        +E+    F+ M L  
Sbjct: 438 LIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSM-LDQ 496

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
               DN  Y  +++   S GN++ A  +  E+ + G   +V   + LI  L K     D 
Sbjct: 497 GVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTA---DR 553

Query: 488 VRVFGVSID---RGVKPD 502
            + FG+  +   +GV P+
Sbjct: 554 EKAFGILDEMSKKGVDPN 571



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 128/289 (44%), Gaps = 12/289 (4%)

Query: 276 VLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLE 335
           VL+   R ++      P    VL   + +SG       V+  M+  G+ P++   N LL+
Sbjct: 31  VLASIHRALSDSGHRSPAVLDVLVDTYKKSGRVQDAAEVVLMMRDRGLAPSIRCCNALLK 90

Query: 336 AMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPM 395
            + +A    L   + + MV +G++PD  T + LI+ Y K R    A ++   MRE    +
Sbjct: 91  DLLRADAMALLWKVREFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGL 150

Query: 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDY-CKPDNYSYTAMLNIYGSGGNVDNAIE 454
           + + YN L+      G VEEA    +DM+  DY   PD ++Y A++N        + A  
Sbjct: 151 NTVTYNVLIAGLCRSGAVEEAFGFKKDME--DYGLVPDGFTYGALINGLCKSRRSNEAKA 208

Query: 455 LFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVS 514
           L +EMS   +  NV+    LI    +    D+  ++    +  GV+P+      L  V  
Sbjct: 209 LLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNL--VRG 266

Query: 515 LCETSEDVGKVITCLQQA-----NPKLVAFLNLIEDNSTGFENIKEEFR 558
           LC+  + + +    L+Q       P  + + NLI +      N K+ FR
Sbjct: 267 LCKMGQ-MDRASLLLKQMVRDSHRPDTITY-NLIIEGHFRHHNKKDAFR 313



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 75/323 (23%), Positives = 130/323 (40%), Gaps = 42/323 (13%)

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
            ++   K+     +A E    M   GL P     +A+L    ++  +  +  + E  V +
Sbjct: 52  VLVDTYKKSGRVQDAAEVVLMMRDRGLAPSIRCCNALLKDLLRADAMALLWKVREFMVGA 111

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G  PD   +S L + + +  ++D  + VL EM+  G   N V YN L+  + ++G    A
Sbjct: 112 GISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEA 171

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER------------------- 387
                +M + GL PD  T  ALI    K+R + +A  L +                    
Sbjct: 172 FGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDG 231

Query: 388 -MRENKWPMDF---------------ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
            MRE      F               I Y+ L+     +G ++ A  L + M + D  +P
Sbjct: 232 FMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQM-VRDSHRP 290

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL---GKARRIDDLV 488
           D  +Y  ++  +    N  +A  L  EM   G++ NV   + +I  L   G+  +  DL+
Sbjct: 291 DTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLL 350

Query: 489 RVFGVSIDRGVKPDDRLCGCLLS 511
                   +G+KP+  +   L+S
Sbjct: 351 EEM---TTKGLKPNAFVYAPLIS 370



 Score = 45.4 bits (106), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 55/270 (20%), Positives = 107/270 (39%), Gaps = 22/270 (8%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           FN I ++ L P    + ++   S + G        L NEM++  I  D   YS + T   
Sbjct: 595 FNSILAKGLVPNCVTYTSLIDGSCKVGDISNAF-YLYNEMLATGITPDAFVYSVLTTGCS 653

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
                ++A+   E M+  G      +++ ++D + K GK++E L L    +  G  P+ +
Sbjct: 654 SAGDLEQAMFLIEEMFLRG-HASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNAL 712

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
               +     E+G    +  +  E++    +     ++                SLF +M
Sbjct: 713 TIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFS----------------SLFMDM 756

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
           +  G  P +  +  +I+ + K      AL L + +     PM    Y  +++     G +
Sbjct: 757 INQGKIPLD-VVDDMIRDHCKEGNLDKALMLRDVIVAKSAPMGCSSYLAIVDNLCRKGKL 815

Query: 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIY 443
            EA  L ++M      +P   +  A+L I+
Sbjct: 816 SEALNLLKEMDKRGNLQP---TLVALLGIF 842


>gi|357448559|ref|XP_003594555.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483603|gb|AES64806.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/336 (25%), Positives = 167/336 (49%), Gaps = 9/336 (2%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLA--NEMVSNEIELDNITYS 226
           K+Y  F  +K ++  P +T  Y + ++    G+  +  E LA    M+     L+ I Y+
Sbjct: 241 KAYKVFEDMKRRHCEP-DTFTYTIMIRMT--GKAGKTDESLALFQAMLEKGFTLNLIAYN 297

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T+I    +  + D+A+  F +M + G  P+E TYS +L+V    G++ ++ ++ E  ++ 
Sbjct: 298 TMIEALAKGRMADKAVLLFSKMVENGCQPNEFTYSVLLNVLVAEGQLNKLDNIVE--MSK 355

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
            +    I ++   +   + G       +   M ++  + +   Y ++LE++  +GK   A
Sbjct: 356 KYMNKQI-YAYFVRTLSKLGHSSEAHRLFCNMWNVHDKGDKDAYMSMLESLCSSGKIAEA 414

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
             L +   E  +T D      +    G+ +      +L+E+M+++  P D   YN L++ 
Sbjct: 415 IDLLNRFHEKCITTDTIMYNTVFTALGRLKQVSHIHDLYEKMKQDGPPPDIFTYNILISS 474

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               G V+ A ++FE+++ S+ C+PD  SY +++N  G  G+VD A   F+EM E G+  
Sbjct: 475 YGRAGRVDSAVKIFEELENSN-CQPDVISYNSLINCLGKNGDVDEAHMRFKEMQEKGLNP 533

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           +V+  + LI+C GK  +++    +F   I  G  P+
Sbjct: 534 DVVTYSTLIECFGKTDKVEMACSLFDEMIAEGCSPN 569



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 102/195 (52%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L N      I  D I Y+T+ T   R        + +E+M + G  PD  TY+ ++  Y 
Sbjct: 417 LLNRFHEKCITTDTIMYNTVFTALGRLKQVSHIHDLYEKMKQDGPPPDIFTYNILISSYG 476

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           ++G+V+  + ++E    S  +PD I+++ L    G++GD D      +EM+  G+ P++V
Sbjct: 477 RAGRVDSAVKIFEELENSNCQPDVISYNSLINCLGKNGDVDEAHMRFKEMQEKGLNPDVV 536

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            Y+TL+E  GK  K  +A SLFDEM+  G +P+  T   L+    ++    +A++L+ ++
Sbjct: 537 TYSTLIECFGKTDKVEMACSLFDEMIAEGCSPNLVTYNILLDCLERSGRTAEAVDLYAKL 596

Query: 389 RENKWPMDFILYNTL 403
           ++     D I Y  L
Sbjct: 597 KQQGLTPDSITYAVL 611



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 105/436 (24%), Positives = 190/436 (43%), Gaps = 42/436 (9%)

Query: 141 FLRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKS--QNLFPMETIFYNVTMKS-- 196
           +L++++ IP  P    A LIL SLK    ++ FF++  S   + F    +F  ++  S  
Sbjct: 81  YLQSLS-IPLTPLE--ASLILKSLKNPTLAFKFFHFCPSLKNDPFIYNRLFLTLSRSSSQ 137

Query: 197 LRFGRQFQLIEQLANEMVSNEIELDNI-------------------------TYSTIITC 231
           LRF +   L++ +    V   I   NI                         +Y  ++  
Sbjct: 138 LRFEQTESLLDDMEKRGVKGSISTVNILIGFFGDLDRCVGLVKKWGLRFNAYSYKCLLQG 197

Query: 232 AKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291
             R    D+A   +  M + G   D   ++ +LD  AK  KV++   ++E       +PD
Sbjct: 198 YLRLRDCDKAFGVYLDMLRCGYSLDIFAFNMLLDALAKDQKVDKAYKVFEDMKRRHCEPD 257

Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
              ++++ +M G++G  D    + Q M   G   NL+ YNT++EA+ K      A  LF 
Sbjct: 258 TFTYTIMIRMTGKAGKTDESLALFQAMLEKGFTLNLIAYNTMIEALAKGRMADKAVLLFS 317

Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE-NKWPMDFILYNTLLNMCADI 410
           +MVE+G  P+E T + L+ +      A+  L   + + E +K  M+  +Y   +   + +
Sbjct: 318 KMVENGCQPNEFTYSVLLNVL----VAEGQLNKLDNIVEMSKKYMNKQIYAYFVRTLSKL 373

Query: 411 GLVEEAERLFEDM-KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVM 469
           G   EA RLF +M  + D  K D  +Y +ML    S G +  AI+L     E  +  + +
Sbjct: 374 GHSSEAHRLFCNMWNVHD--KGDKDAYMSMLESLCSSGKIAEAIDLLNRFHEKCITTDTI 431

Query: 470 GCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCL 529
               +   LG+ +++  +  ++      G  PD      L+S        +   K+   L
Sbjct: 432 MYNTVFTALGRLKQVSHIHDLYEKMKQDGPPPDIFTYNILISSYGRAGRVDSAVKIFEEL 491

Query: 530 QQAN--PKLVAFLNLI 543
           + +N  P ++++ +LI
Sbjct: 492 ENSNCQPDVISYNSLI 507



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 96/200 (48%), Gaps = 1/200 (0%)

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           EAI+   R ++  +  D + Y+ +     +  +V  +  LYE+    G  PD   +++L 
Sbjct: 413 EAIDLLNRFHEKCITTDTIMYNTVFTALGRLKQVSHIHDLYEKMKQDGPPPDIFTYNILI 472

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
             +G +G  D    + +E+++   QP+++ YN+L+  +GK G    A   F EM E GL 
Sbjct: 473 SSYGRAGRVDSAVKIFEELENSNCQPDVISYNSLINCLGKNGDVDEAHMRFKEMQEKGLN 532

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
           PD  T + LI+ +GK    + A  L++ M       + + YN LL+     G   EA  L
Sbjct: 533 PDVVTYSTLIECFGKTDKVEMACSLFDEMIAEGCSPNLVTYNILLDCLERSGRTAEAVDL 592

Query: 420 FEDMKLSDYCKPDNYSYTAM 439
           +  +K      PD+ +Y  +
Sbjct: 593 YAKLKQQGL-TPDSITYAVL 611



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 99/195 (50%), Gaps = 4/195 (2%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           +TI YN    +L   +Q   I  L  +M  +    D  TY+ +I+   R    D A++ F
Sbjct: 429 DTIMYNTVFTALGRLKQVSHIHDLYEKMKQDGPPPDIFTYNILISSYGRAGRVDSAVKIF 488

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           E +  +   PD ++Y+++++   K+G V+E    ++     G  PD + +S L + FG++
Sbjct: 489 EELENSNCQPDVISYNSLINCLGKNGDVDEAHMRFKEMQEKGLNPDVVTYSTLIECFGKT 548

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
              +    +  EM + G  PNLV YN LL+ + ++G+   A  L+ ++ + GLTPD  T 
Sbjct: 549 DKVEMACSLFDEMIAEGCSPNLVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSITY 608

Query: 366 TALIKI----YGKAR 376
             L ++    +GK R
Sbjct: 609 AVLERLQSGRHGKLR 623


>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
          Length = 851

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 152/314 (48%), Gaps = 1/314 (0%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN+ ++      + Q       EM  N    + +TY+T+I    +    DEA    + M 
Sbjct: 13  YNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMS 72

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
             G+ P+ ++Y+ I++   + G ++E   + E     G+ PD + ++ L   + + G++ 
Sbjct: 73  SKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFH 132

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               +  EM   GV P++V Y  L+ +M KA     A   FD+M   GL P+E+T T LI
Sbjct: 133 QALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLI 192

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
             + +     +A  +   M E+ +    + YN  ++    +  +EEA  + ++M +    
Sbjct: 193 DGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEM-VEKGL 251

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
            PD  SY+ +++ +   G +D A ++ +EM E GV+ + +  + LIQ L + RR+ +   
Sbjct: 252 APDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACD 311

Query: 490 VFGVSIDRGVKPDD 503
           +    +D G+ PD+
Sbjct: 312 LSQEMLDMGLPPDE 325



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 149/305 (48%), Gaps = 3/305 (0%)

Query: 213 MVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK 272
           M+ + +  +  TY+ +I          + +  F  M + G +P+ VTY+ ++D Y K G+
Sbjct: 1   MIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGR 60

Query: 273 VEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNT 332
           ++E   L +   + G +P+ I+++V+       G       +L+EM   G  P+ V YNT
Sbjct: 61  IDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNT 120

Query: 333 LLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENK 392
           LL    K G    A  +  EMV +G++P   T TALI    KAR    A+E +++MR   
Sbjct: 121 LLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRG 180

Query: 393 WPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNA 452
              +   Y TL++  +  GL+ EA R+  +M  S +  P   +Y A ++ +     ++ A
Sbjct: 181 LRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGF-SPSVVTYNAFIHGHCVLERMEEA 239

Query: 453 IELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSV 512
           + + +EM E G+A +V+  + +I    +   +D   ++    +++GV PD      L+  
Sbjct: 240 LGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQ- 298

Query: 513 VSLCE 517
             LCE
Sbjct: 299 -GLCE 302



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 154/338 (45%), Gaps = 23/338 (6%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIE--QLANEMVSNEIELDNITYSTIIT 230
           FF+ ++ + L P E  +  +      F RQ  L E  ++ NEM  +      +TY+  I 
Sbjct: 172 FFDQMRIRGLRPNERTYTTLIDG---FSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIH 228

Query: 231 CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
                   +EA+   + M + GL PD V+YS I+  + + G+++    + +  V  G  P
Sbjct: 229 GHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSP 288

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
           D + +S L +   E         + QEM  +G+ P+   Y TL+ A    G    A  L 
Sbjct: 289 DAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLH 348

Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALEL-WERMRENKWPMDFILYNTLLNMCAD 409
           DEM+  G  PD  T + LI    K    ++A  L ++ + E   P D + Y+TL+  C++
Sbjct: 349 DEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSD-VTYDTLIENCSN 407

Query: 410 I---------------GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIE 454
           I               GL+ EA+R+FE M   ++ KP    Y  +++ +  GGN+  A  
Sbjct: 408 IEFKSVVALIKGFCMKGLMHEADRVFESMVERNH-KPGEAVYNVIIHGHCRGGNLPKAFN 466

Query: 455 LFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFG 492
           L++EM   G   + +    LI+ L K    +++  V G
Sbjct: 467 LYKEMIHSGFVPHTVTVITLIKALFKEGMNEEMSEVIG 504



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 86/362 (23%), Positives = 154/362 (42%), Gaps = 43/362 (11%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTM----KSLRFGRQFQLIEQLANEMVSNEIELDNI 223
           QK    F  ++     P   + YN  +    K  R    F L++     M S  ++ + I
Sbjct: 27  QKGLGCFGEMERNGCLP-NVVTYNTLIDAYCKMGRIDEAFGLLKS----MSSKGMQPNLI 81

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           +Y+ II    R     EA E  E M   G  PDEVTY+ +L+ Y K G   + L ++   
Sbjct: 82  SYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEM 141

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
           V +G  P  + ++ L     ++ + +       +M+  G++PN   Y TL++   + G  
Sbjct: 142 VRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLL 201

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
             A  + +EM ESG +P   T  A I  +      ++AL + + M E     D + Y+T+
Sbjct: 202 NEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTI 261

Query: 404 LNMCADIGLVEEAERLFEDM-----------------------KLSDYCK---------- 430
           ++     G ++ A ++ ++M                       +L++ C           
Sbjct: 262 ISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGL 321

Query: 431 -PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
            PD ++YT ++N Y   G+++ A+ L +EM   G   + +  + LI  L K  R  +  R
Sbjct: 322 PPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKR 381

Query: 490 VF 491
           + 
Sbjct: 382 LL 383


>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
 gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 145/296 (48%), Gaps = 3/296 (1%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           QL  +M     + + + YSTII    +  L  EA+E+   M   G+ P+ VTYS+IL  +
Sbjct: 103 QLLKKMEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGF 162

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
              G+  E  SL+++ V     PD + F++L     + G     + V + M   GV+PN+
Sbjct: 163 CNLGRSNEATSLFKQMVERNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNV 222

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
             YN L++      +   A+ LF+ MV  G  P  ++   LIK + K+    +A  L   
Sbjct: 223 NTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAE 282

Query: 388 MRENKWPMDFILYNTLL-NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
           M       D + Y+TL+   C D G  ++A++L E+M+ S    PD  +Y+ +L+     
Sbjct: 283 MSHKALTPDTVTYSTLMKGFCQD-GRPQDAQKLLEEMR-SYGLLPDLMTYSIVLDGLCKQ 340

Query: 447 GNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           G++D A EL + M E  +  N+   T LIQ +    +++    +F     +G++PD
Sbjct: 341 GHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGKLEAARELFSNLFVKGIQPD 396



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 88/346 (25%), Positives = 163/346 (47%), Gaps = 5/346 (1%)

Query: 160 ILNSL---KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSN 216
           I++SL   K   ++  F + + ++ + P    + ++       GR  +    L  +MV  
Sbjct: 123 IIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNE-ATSLFKQMVER 181

Query: 217 EIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV 276
            +  D +T++ ++    +  +  EA   FE M + G+ P+  TY+A++D Y    +++E 
Sbjct: 182 NVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEA 241

Query: 277 LSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA 336
             L+   V  G  P   ++++L K   +SG  D  + +L EM    + P+ V Y+TL++ 
Sbjct: 242 QKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKG 301

Query: 337 MGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMD 396
             + G+P  A+ L +EM   GL PD  T + ++    K     +A EL + M+E+K   +
Sbjct: 302 FCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPN 361

Query: 397 FILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELF 456
             +Y  L+    + G +E A  LF ++ +    +PD  +YT M++    GG  + A ELF
Sbjct: 362 IFIYTILIQGMCNFGKLEAARELFSNLFVKGI-QPDVVTYTVMISGLLKGGLSNEACELF 420

Query: 457 EEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            +M+  G   N      +IQ   +     +  R+    + RG   D
Sbjct: 421 RDMAVHGCLPNSCTYNVIIQGFLRNGDTSNAGRLIEEMVGRGFSAD 466



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 145/287 (50%), Gaps = 3/287 (1%)

Query: 218 IELDNITYSTIITCAKRCNL--FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEE 275
           I  D  T + +I C    N   F  A      M+K GL P+ VT+S +L+  +   K+ +
Sbjct: 6   IRPDVYTLTILINCFCHSNHDHFHFAFSVLGNMFKLGLQPNHVTFSTLLNGLSSKAKIID 65

Query: 276 VLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLE 335
            + L++  V  G++PD I +S +     + G       +L++M+  G +PN+VVY+T+++
Sbjct: 66  AVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIID 125

Query: 336 AMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPM 395
           ++ K      A     EMV  G++P+  T ++++  +     + +A  L+++M E     
Sbjct: 126 SLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMP 185

Query: 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIEL 455
           D + +N L++  +  G++ EA+ +FE M +    +P+  +Y A+++ Y S   +D A +L
Sbjct: 186 DTVTFNILVDGLSKEGMILEAQCVFETM-IEKGVEPNVNTYNALMDGYCSQSQMDEAQKL 244

Query: 456 FEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           F  M   G A +V     LI+   K+ RID+   +      + + PD
Sbjct: 245 FNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPD 291



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 82/183 (44%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           +T+ Y+  MK      + Q  ++L  EM S  +  D +TYS ++    +    DEA E  
Sbjct: 291 DTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFELL 350

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           + M ++ + P+   Y+ ++      GK+E    L+      G +PD + ++V+     + 
Sbjct: 351 KAMQESKIEPNIFIYTILIQGMCNFGKLEAARELFSNLFVKGIQPDVVTYTVMISGLLKG 410

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G  +    + ++M   G  PN   YN +++   + G    A  L +EMV  G + D  T 
Sbjct: 411 GLSNEACELFRDMAVHGCLPNSCTYNVIIQGFLRNGDTSNAGRLIEEMVGRGFSADSSTF 470

Query: 366 TAL 368
             L
Sbjct: 471 QML 473



 Score = 47.8 bits (112), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 54/113 (47%), Gaps = 2/113 (1%)

Query: 190 YNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERM 248
           Y + ++ +  FG+  +   +L + +    I+ D +TY+ +I+   +  L +EA E F  M
Sbjct: 365 YTILIQGMCNFGK-LEAARELFSNLFVKGIQPDVVTYTVMISGLLKGGLSNEACELFRDM 423

Query: 249 YKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKM 301
              G +P+  TY+ I+  + ++G       L E  V  G+  D   F +L  +
Sbjct: 424 AVHGCLPNSCTYNVIIQGFLRNGDTSNAGRLIEEMVGRGFSADSSTFQMLSDL 476



 Score = 47.8 bits (112), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 72/161 (44%), Gaps = 9/161 (5%)

Query: 177 IKSQNLFPMETIFYNVTMKSLRFGRQFQLIE--QLANEMVSNEIELDNITYSTIITCAKR 234
           ++S  L P + + Y++ +  L   +Q  L E  +L   M  ++IE +   Y+ +I     
Sbjct: 318 MRSYGLLP-DLMTYSIVLDGL--CKQGHLDEAFELLKAMQESKIEPNIFIYTILI--QGM 372

Query: 235 CNL--FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
           CN    + A E F  ++  G+ PD VTY+ ++    K G   E   L+      G  P+ 
Sbjct: 373 CNFGKLEAARELFSNLFVKGIQPDVVTYTVMISGLLKGGLSNEACELFRDMAVHGCLPNS 432

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTL 333
             ++V+ + F  +GD      +++EM   G   +   +  L
Sbjct: 433 CTYNVIIQGFLRNGDTSNAGRLIEEMVGRGFSADSSTFQML 473


>gi|159464329|ref|XP_001690394.1| hypothetical protein CHLREDRAFT_114572 [Chlamydomonas reinhardtii]
 gi|158279894|gb|EDP05653.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 287

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/264 (30%), Positives = 136/264 (51%), Gaps = 3/264 (1%)

Query: 201 RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTY 260
           +Q +   +L  EM S  I+ +  TYS ++    + N  D A + +++M + G  P+ VTY
Sbjct: 14  QQLRRALELVAEMRSRGIDCNVHTYSALMNVCIKANELDLAQDVYKQMLEEGCSPNLVTY 73

Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
           + ++DV A   K  E   L    V SG + +   ++ +     +SG  +    V ++M +
Sbjct: 74  NILIDVEASKRKTTERRRLAVALVRSGIQAEVRTYNTVISACNKSGQPEQALKVYEKMLA 133

Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA-RWAK 379
            GV+P+   Y  L+ A GK G+   A  +F +M+  G   +  T ++LI    KA RW +
Sbjct: 134 AGVKPSATTYTALISAYGKKGQVEKALDIFRDMIRRGCERNVITYSSLISACEKAGRW-E 192

Query: 380 DALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAM 439
            ALEL+ +M +     + + YN+L+  C+  G  E+A  LFE M+ +  CKPD+ +Y  +
Sbjct: 193 MALELFSKMHKENCKPNVVTYNSLIAACSHGGHWEKASELFEQMQ-TQGCKPDSITYCGL 251

Query: 440 LNIYGSGGNVDNAIELFEEMSELG 463
           +  Y  GG    A++ FE+M   G
Sbjct: 252 ITAYERGGQWRRALKAFEQMQSQG 275



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 135/279 (48%), Gaps = 1/279 (0%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           TY+T+I+          A+E    M   G+  +  TYSA+++V  K+ +++    +Y++ 
Sbjct: 2   TYTTMISQCGSHQQLRRALELVAEMRSRGIDCNVHTYSALMNVCIKANELDLAQDVYKQM 61

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
           +  G  P+ + +++L  +          R +   +   G+Q  +  YNT++ A  K+G+P
Sbjct: 62  LEEGCSPNLVTYNILIDVEASKRKTTERRRLAVALVRSGIQAEVRTYNTVISACNKSGQP 121

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
             A  ++++M+ +G+ P   T TALI  YGK    + AL+++  M       + I Y++L
Sbjct: 122 EQALKVYEKMLAAGVKPSATTYTALISAYGKKGQVEKALDIFRDMIRRGCERNVITYSSL 181

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           ++ C   G  E A  LF  M   + CKP+  +Y +++     GG+ + A ELFE+M   G
Sbjct: 182 ISACEKAGRWEMALELFSKMH-KENCKPNVVTYNSLIAACSHGGHWEKASELFEQMQTQG 240

Query: 464 VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
              + +    LI    +  +    ++ F     +G  PD
Sbjct: 241 CKPDSITYCGLITAYERGGQWRRALKAFEQMQSQGCHPD 279



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 110/217 (50%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           + YN+ +      R+     +LA  +V + I+ +  TY+T+I+   +    ++A++ +E+
Sbjct: 71  VTYNILIDVEASKRKTTERRRLAVALVRSGIQAEVRTYNTVISACNKSGQPEQALKVYEK 130

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M   G+ P   TY+A++  Y K G+VE+ L ++   +  G + + I +S L     ++G 
Sbjct: 131 MLAAGVKPSATTYTALISAYGKKGQVEKALDIFRDMIRRGCERNVITYSSLISACEKAGR 190

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
           ++    +  +M     +PN+V YN+L+ A    G    A  LF++M   G  PD  T   
Sbjct: 191 WEMALELFSKMHKENCKPNVVTYNSLIAACSHGGHWEKASELFEQMQTQGCKPDSITYCG 250

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
           LI  Y +    + AL+ +E+M+      D  ++N+L+
Sbjct: 251 LITAYERGGQWRRALKAFEQMQSQGCHPDAAVFNSLM 287


>gi|218194011|gb|EEC76438.1| hypothetical protein OsI_14128 [Oryza sativa Indica Group]
          Length = 669

 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 115/485 (23%), Positives = 199/485 (41%), Gaps = 39/485 (8%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           +T  Y   + +         + +L  EM +     D   Y  ++    R     EA+   
Sbjct: 86  DTASYRHIVDAFAGAGNLSRVAELFAEMAATGHTPDPSAYLGLMEAHTRVGATAEAVAVL 145

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
            +M   G  P   TY  +LD+Y + G+ + V  L+ R + +   PD   ++VL ++FG+ 
Sbjct: 146 RQMQADGCPPTAATYRVLLDLYGRQGRFDGVRELF-REMRTTVPPDTATYNVLFRVFGDG 204

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G +  +  + Q+M    V+P++     ++ A G+ G    AR + D +   G+ P  K  
Sbjct: 205 GFFKEVVELFQDMLHSEVEPDIDTCENVMVACGRGGLHEDAREVLDYITTEGMVPTAKAY 264

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
           T L++  G A   ++A   +  M E         YN L N  A  GL +EAE +F  M  
Sbjct: 265 TGLVEALGHAAMYEEAYVAFNMMTEIGSLPTIETYNALANAFAKGGLFQEAEAIFSRMTN 324

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
           +   + D  S+ A++  Y  G  +D+A++ + EM +     +      ++     A  ID
Sbjct: 325 NAAIQKDKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCIAGVID 384

Query: 486 DLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIED 545
           +    F         P         S+++ C        ++  L   N +     +L+E+
Sbjct: 385 ESKEQFEELQSMVTVP---------SIIAYC--------MMLSLYARNDRWTDAYDLLEE 427

Query: 546 NSTGFEN---------IKEEFRN---------VIKDTEV---DARRPFCNCLIDICRNRN 584
             T   +         IK E+ +         V+ ++ +   D    F N L+D+     
Sbjct: 428 MKTNRASSTHQVIASMIKGEYDDDSNWQMVEYVLDNSNLEGCDYSLRFFNALLDVLWWFG 487

Query: 585 LNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAKIVLREE 644
              RA  +L     YGL+P L   T   WS DV  +SVG +  A+  W+  L   +  +E
Sbjct: 488 QKGRAARVLDQALKYGLFPELFRDTKLVWSADVHRMSVGGSLVAVSVWLNKLYDRLKGDE 547

Query: 645 VLPQL 649
            LPQL
Sbjct: 548 DLPQL 552



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 63/277 (22%), Positives = 119/277 (42%), Gaps = 37/277 (13%)

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           P +T  YNV  +    G  F+ + +L  +M+ +E+E D  T   ++    R  L ++A E
Sbjct: 188 PPDTATYNVLFRVFGDGGFFKEVVELFQDMLHSEVEPDIDTCENVMVACGRGGLHEDARE 247

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
             + +   G++P    Y+ +++    +   EE                 +AF++      
Sbjct: 248 VLDYITTEGMVPTAKAYTGLVEALGHAAMYEEAY---------------VAFNM------ 286

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMV-ESGLTPDE 362
                         M  +G  P +  YN L  A  K G    A ++F  M   + +  D+
Sbjct: 287 --------------MTEIGSLPTIETYNALANAFAKGGLFQEAEAIFSRMTNNAAIQKDK 332

Query: 363 KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED 422
            +  ALI+ Y +     DA++ +  MR++++  D      +LN     G+++E++  FE+
Sbjct: 333 DSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCIAGVIDESKEQFEE 392

Query: 423 MKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           ++ S    P   +Y  ML++Y       +A +L EEM
Sbjct: 393 LQ-SMVTVPSIIAYCMMLSLYARNDRWTDAYDLLEEM 428



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/271 (22%), Positives = 96/271 (35%), Gaps = 46/271 (16%)

Query: 318 MKSLGVQPNLVVYNTLLEAMGKAGKP--------GL------------------------ 345
           MK+ GV P    YNT+L A  +A  P        GL                        
Sbjct: 1   MKASGVAPTAATYNTVLAACARATDPPVPFDMLLGLFAEMRHDPSPSVRPDLTTYNTLLA 60

Query: 346 ----------ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPM 395
                     +  L   M+E+G+ PD  +   ++  +  A       EL+  M       
Sbjct: 61  AAAVRALSDQSEMLLRTMLEAGVLPDTASYRHIVDAFAGAGNLSRVAELFAEMAATGHTP 120

Query: 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIEL 455
           D   Y  L+     +G   EA  +   M+ +D C P   +Y  +L++YG  G  D   EL
Sbjct: 121 DPSAYLGLMEAHTRVGATAEAVAVLRQMQ-ADGCPPTAATYRVLLDLYGRQGRFDGVREL 179

Query: 456 FEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSL 515
           F EM    V  +      L +  G      ++V +F   +   V+PD   C  ++     
Sbjct: 180 FREM-RTTVPPDTATYNVLFRVFGDGGFFKEVVELFQDMLHSEVEPDIDTCENVMVACGR 238

Query: 516 CETSEDVGKVITCLQQAN--PKLVAFLNLIE 544
               ED  +V+  +      P   A+  L+E
Sbjct: 239 GGLHEDAREVLDYITTEGMVPTAKAYTGLVE 269



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/239 (21%), Positives = 97/239 (40%), Gaps = 40/239 (16%)

Query: 161 LNSLKFWQKSYFFFNWIKSQNLFP-METIFYNVTMKSLRFGRQFQLIEQLANEMVSNE-I 218
           L     ++++Y  FN +      P +ET  YN    +   G  FQ  E + + M +N  I
Sbjct: 271 LGHAAMYEEAYVAFNMMTEIGSLPTIET--YNALANAFAKGGLFQEAEAIFSRMTNNAAI 328

Query: 219 ELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS 278
           + D  ++  +I    +    D+A++ +  M K+   PDE +   +L+ Y  +G ++E   
Sbjct: 329 QKDKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCIAGVIDESKE 388

Query: 279 LYERGVASGWKPDPIAFSVLGKMFGES------------------------------GDY 308
            +E   +    P  IA+ ++  ++  +                              G+Y
Sbjct: 389 QFEELQSMVTVPSIIAYCMMLSLYARNDRWTDAYDLLEEMKTNRASSTHQVIASMIKGEY 448

Query: 309 DG------IRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD 361
           D       + YVL      G   +L  +N LL+ +   G+ G A  + D+ ++ GL P+
Sbjct: 449 DDDSNWQMVEYVLDNSNLEGCDYSLRFFNALLDVLWWFGQKGRAARVLDQALKYGLFPE 507


>gi|296081018|emb|CBI18522.3| unnamed protein product [Vitis vinifera]
          Length = 808

 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 152/293 (51%), Gaps = 11/293 (3%)

Query: 175 NWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQL--ANEMVSNEIELDNITYSTIITCA 232
           +W++ +  F  + +FY+  +    + R+  L+E +    EM+   I  D ++Y+ +I   
Sbjct: 147 SWMEREE-FVFDVVFYSSWICG--YFREGVLVEAIRKHKEMIEKGIAPDTVSYTILIDGF 203

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            R    ++AI + E+M K GL P+ VTY+AI+  + K GK++E  +L++     G + D 
Sbjct: 204 SREGYVEKAIGFLEKMKKDGLKPNLVTYTAIMLGFCKKGKLDEAYTLFKMVENLGIEVDE 263

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
             +  L   F   GD D +  +L++M+  G+ P++V YN+++  + KAG+   A    DE
Sbjct: 264 FMYVTLIDGFCTRGDIDCVFGLLEDMEKRGISPSIVTYNSIINGLCKAGRTSEA----DE 319

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
            V  G+  D  T + L+  Y +    K  LE   R+ E+   +D ++ NT++     +G 
Sbjct: 320 -VSKGIAGDAVTFSTLLHGYIEEENVKGILETKRRLEEDGVCIDLVMCNTIIKALLMVGA 378

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
           +E+A   ++ M   D    D+ +Y  M+N Y     ++ A+E+F+E  +  ++
Sbjct: 379 LEDAYAFYKGMSGMDLV-ADSVTYCTMINGYCRVSRIEEALEIFDEFRKTSIS 430



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 73/328 (22%), Positives = 145/328 (44%), Gaps = 27/328 (8%)

Query: 185 METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEW 244
           ++ +  N  +K+L      +        M   ++  D++TY T+I    R +  +EA+E 
Sbjct: 361 IDLVMCNTIIKALLMVGALEDAYAFYKGMSGMDLVADSVTYCTMINGYCRVSRIEEALEI 420

Query: 245 FERMYKT------------GLMP-----------DEVTYS---AILDVYAKSGKVEEVLS 278
           F+   KT            G  P           + +T +   ++L    K+G++ +   
Sbjct: 421 FDEFRKTSISSCYLFFVQEGFFPGCMRSIHENEKETITVAFPVSVLKSLKKNGRILDAYK 480

Query: 279 LYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMG 338
           L      +    D + +S++  +  + G  D    +   +K  G+  N+  YN+++  + 
Sbjct: 481 LVIGAEENLPVMDLVDYSIMIDVLCKEGHLDKALDLCAFVKKKGIALNIYAYNSVINGLC 540

Query: 339 KAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFI 398
           + G    A  LFD + +  L P E T   LI    K     DA +L+E+M    +  +  
Sbjct: 541 RQGCLVQAFRLFDSLEKIDLVPSEITYATLIDSLCKEGCLLDAKQLFEKMVIKGFNPNVR 600

Query: 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458
           +YN+L++     G +EEA  L  D+K +   KPD ++ +A++N Y   G+++ A+  F E
Sbjct: 601 VYNSLIDGYCKFGNMEEALNLLIDLK-ARCIKPDEFTVSALINGYCHKGDMEGALGFFFE 659

Query: 459 MSELGVAINVMGCTCLIQCLGKARRIDD 486
             +  +  + +G   L++ L    R+++
Sbjct: 660 FKKKDILPDFLGFMYLVRGLCAKGRMEE 687



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 67/136 (49%), Gaps = 4/136 (2%)

Query: 223 ITYSTIIT--CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           ITY+T+I   C + C L  +A + FE+M   G  P+   Y++++D Y K G +EE L+L 
Sbjct: 565 ITYATLIDSLCKEGCLL--DAKQLFEKMVIKGFNPNVRVYNSLIDGYCKFGNMEEALNLL 622

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
               A   KPD    S L   +   GD +G      E K   + P+ + +  L+  +   
Sbjct: 623 IDLKARCIKPDEFTVSALINGYCHKGDMEGALGFFFEFKKKDILPDFLGFMYLVRGLCAK 682

Query: 341 GKPGLARSLFDEMVES 356
           G+   AR +  EM+++
Sbjct: 683 GRMEEARGILREMLQT 698



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 88/207 (42%), Gaps = 37/207 (17%)

Query: 218 IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL 277
           I L+   Y+++I    R     +A   F+ + K  L+P E+TY+ ++D   K G + +  
Sbjct: 525 IALNIYAYNSVINGLCRQGCLVQAFRLFDSLEKIDLVPSEITYATLIDSLCKEGCLLDAK 584

Query: 278 SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
            L+E+ V  G+                                    PN+ VYN+L++  
Sbjct: 585 QLFEKMVIKGF-----------------------------------NPNVRVYNSLIDGY 609

Query: 338 GKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDF 397
            K G    A +L  ++    + PDE T++ALI  Y      + AL  +   ++     DF
Sbjct: 610 CKFGNMEEALNLLIDLKARCIKPDEFTVSALINGYCHKGDMEGALGFFFEFKKKDILPDF 669

Query: 398 ILYNTLL-NMCADIGLVEEAERLFEDM 423
           + +  L+  +CA  G +EEA  +  +M
Sbjct: 670 LGFMYLVRGLCAK-GRMEEARGILREM 695



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 61/284 (21%), Positives = 126/284 (44%), Gaps = 10/284 (3%)

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
           +D +  +TII         ++A  +++ M    L+ D VTY  +++ Y +  ++EE L +
Sbjct: 361 IDLVMCNTIIKALLMVGALEDAYAFYKGMSGMDLVADSVTYCTMINGYCRVSRIEEALEI 420

Query: 280 YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
           ++      ++   I+   L   F + G + G    + E +   +     V  ++L+++ K
Sbjct: 421 FDE-----FRKTSISSCYL--FFVQEGFFPGCMRSIHENEKETITVAFPV--SVLKSLKK 471

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
            G+   A  L     E+    D    + +I +  K      AL+L   +++    ++   
Sbjct: 472 NGRILDAYKLVIGAEENLPVMDLVDYSIMIDVLCKEGHLDKALDLCAFVKKKGIALNIYA 531

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           YN+++N     G + +A RLF+ ++  D   P   +Y  +++     G + +A +LFE+M
Sbjct: 532 YNSVINGLCRQGCLVQAFRLFDSLEKIDLV-PSEITYATLIDSLCKEGCLLDAKQLFEKM 590

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
              G   NV     LI    K   +++ + +      R +KPD+
Sbjct: 591 VIKGFNPNVRVYNSLIDGYCKFGNMEEALNLLIDLKARCIKPDE 634



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 98/220 (44%), Gaps = 4/220 (1%)

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL--VVYNTLLEAMGKAGKPG 344
           G  P    F  L   F   G       VL+ M    V+      V ++++    K  KP 
Sbjct: 45  GILPSSFTFHSLIHSFTSQGKMSRAIEVLELMTHDKVRYPFGNFVSSSVISGFCKISKPQ 104

Query: 345 LARSLFDEMVESG-LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
           LA   F+  V S  L P+  T TAL+    +    ++  +L   M   ++  D + Y++ 
Sbjct: 105 LAVGFFENAVNSRVLRPNIATCTALLGALFQLGRVREVSDLVSWMEREEFVFDVVFYSSW 164

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           +      G++ EA R  ++M +     PD  SYT +++ +   G V+ AI   E+M + G
Sbjct: 165 ICGYFREGVLVEAIRKHKEM-IEKGIAPDTVSYTILIDGFSREGYVEKAIGFLEKMKKDG 223

Query: 464 VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
           +  N++  T ++    K  ++D+   +F +  + G++ D+
Sbjct: 224 LKPNLVTYTAIMLGFCKKGKLDEAYTLFKMVENLGIEVDE 263



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 86/412 (20%), Positives = 162/412 (39%), Gaps = 90/412 (21%)

Query: 166 FWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQ------FQLIEQLANEMVSNEIE 219
           + +K+  F   +K   L P    +  + +   + G+       F+++E L        IE
Sbjct: 208 YVEKAIGFLEKMKKDGLKPNLVTYTAIMLGFCKKGKLDEAYTLFKMVENLG-------IE 260

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
           +D   Y T+I         D      E M K G+ P  VTY++I++   K+G+  E    
Sbjct: 261 VDEFMYVTLIDGFCTRGDIDCVFGLLEDMEKRGISPSIVTYNSIINGLCKAGRTSEA--- 317

Query: 280 YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM-- 337
               V+ G   D + FS L   + E  +  GI    + ++  GV  +LV+ NT+++A+  
Sbjct: 318 --DEVSKGIAGDAVTFSTLLHGYIEEENVKGILETKRRLEEDGVCIDLVMCNTIIKALLM 375

Query: 338 ------------GKAGKPGLARS---------------------LFDEM----------- 353
                       G +G   +A S                     +FDE            
Sbjct: 376 VGALEDAYAFYKGMSGMDLVADSVTYCTMINGYCRVSRIEEALEIFDEFRKTSISSCYLF 435

Query: 354 -VESGLTP---------DEKTLT-----ALIKIYGKARWAKDALELWERMRENKWPMDFI 398
            V+ G  P         +++T+T     +++K   K     DA +L     EN   MD +
Sbjct: 436 FVQEGFFPGCMRSIHENEKETITVAFPVSVLKSLKKNGRILDAYKLVIGAEENLPVMDLV 495

Query: 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDN-----YSYTAMLNIYGSGGNVDNAI 453
            Y+ ++++    G +++A      + L  + K        Y+Y +++N     G +  A 
Sbjct: 496 DYSIMIDVLCKEGHLDKA------LDLCAFVKKKGIALNIYAYNSVINGLCRQGCLVQAF 549

Query: 454 ELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRL 505
            LF+ + ++ +  + +    LI  L K   + D  ++F   + +G  P+ R+
Sbjct: 550 RLFDSLEKIDLVPSEITYATLIDSLCKEGCLLDAKQLFEKMVIKGFNPNVRV 601


>gi|147845950|emb|CAN82028.1| hypothetical protein VITISV_000613 [Vitis vinifera]
          Length = 790

 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/325 (24%), Positives = 155/325 (47%), Gaps = 35/325 (10%)

Query: 212 EMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG 271
           +M     E D  TY+ +I    +    DE++  F+ M + G  P+ + Y+ ++   A + 
Sbjct: 317 DMKRKHCEPDEYTYTIMIRMTGKIGKADESLTLFQEMTEKGYTPNLIAYNTMIQALANNR 376

Query: 272 KVEEVLSLYERGVASGWKPDPIAFSVLGKMF---GESGDYDGI-------------RYVL 315
            V++ + L+ + V +  +P+   FSV+  +    G+ G  D +              Y++
Sbjct: 377 MVDKTIFLFSKMVENNCRPNGFTFSVILNVLVAEGQLGRLDEVVEVSNKFMNKSIYAYLV 436

Query: 316 QEMKSLGV------------------QPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
           + +  LG                   + +   Y ++LE++  AGK   A  L  ++ E  
Sbjct: 437 RTLSKLGHASEAHRLLHLQYDWSFHDEGDRDAYMSMLESLCDAGKTTEALDLLSKIHEKR 496

Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417
           ++ D      ++   GK +   D  +L+E+M+++    D   YN L++     G VEEA 
Sbjct: 497 ISTDTVMYNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDIFSYNILISSFGRAGRVEEAV 556

Query: 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
           ++FE+++ S  CKPD  S+ +++N  G  G++D A   F+EM E G++ +V+  + LI+C
Sbjct: 557 KIFEELENSS-CKPDIISFNSLINCLGKNGDIDEAHMRFKEMREEGLSPDVVTYSTLIEC 615

Query: 478 LGKARRIDDLVRVFGVSIDRGVKPD 502
            GK  +++   R+F   +  G  P+
Sbjct: 616 FGKTDKVEMACRLFDEMLAEGCSPN 640



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 106/195 (54%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L +++    I  D + Y+T+++   +     +  + +E+M + G  PD  +Y+ ++  + 
Sbjct: 488 LLSKIHEKRISTDTVMYNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDIFSYNILISSFG 547

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           ++G+VEE + ++E    S  KPD I+F+ L    G++GD D      +EM+  G+ P++V
Sbjct: 548 RAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEMREEGLSPDVV 607

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            Y+TL+E  GK  K  +A  LFDEM+  G +P+  T   L+    ++    +A++L+ ++
Sbjct: 608 TYSTLIECFGKTDKVEMACRLFDEMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKL 667

Query: 389 RENKWPMDFILYNTL 403
           ++     D I Y  L
Sbjct: 668 KQQGLTPDSITYAVL 682



 Score = 97.4 bits (241), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 105/209 (50%), Gaps = 2/209 (0%)

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           EA++   ++++  +  D V Y+ +L    K  K  ++  LYE+    G  PD  ++++L 
Sbjct: 484 EALDLLSKIHEKRISTDTVMYNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDIFSYNILI 543

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
             FG +G  +    + +E+++   +P+++ +N+L+  +GK G    A   F EM E GL+
Sbjct: 544 SSFGRAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEMREEGLS 603

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
           PD  T + LI+ +GK    + A  L++ M       + + YN LL+     G   EA  L
Sbjct: 604 PDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCSPNIVTYNILLDCLERSGRTAEAVDL 663

Query: 420 FEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
           +  +K      PD+ +Y A+L    SG +
Sbjct: 664 YAKLK-QQGLTPDSITY-AVLERLQSGSH 690



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 97/186 (52%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           +T+ YN  + +L   ++   +  L  +M  +    D  +Y+ +I+   R    +EA++ F
Sbjct: 500 DTVMYNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDIFSYNILISSFGRAGRVEEAVKIF 559

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           E +  +   PD ++++++++   K+G ++E    ++     G  PD + +S L + FG++
Sbjct: 560 EELENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEMREEGLSPDVVTYSTLIECFGKT 619

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
              +    +  EM + G  PN+V YN LL+ + ++G+   A  L+ ++ + GLTPD  T 
Sbjct: 620 DKVEMACRLFDEMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSITY 679

Query: 366 TALIKI 371
             L ++
Sbjct: 680 AVLERL 685



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 110/242 (45%), Gaps = 36/242 (14%)

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
           +S   D IR +L +M+  GV+ ++   N L+   G  G   + R  FD + +  L  +  
Sbjct: 170 DSERLDLIRAILDDMERCGVRGSISTINILIGIFG--GGADVERC-FDLVKKWDLQMNCY 226

Query: 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM----------------- 406
           T   L++ + ++  +  A E++  +R   + +D   YN LL+                  
Sbjct: 227 TYKCLLQAHLRSNNSNKAFEVYVELRRRGYKLDIFAYNMLLDALAKDNKLTWNLLLVCLQ 286

Query: 407 ------CADIGL---------VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDN 451
                 C  + L         V++   +F+DMK   +C+PD Y+YT M+ + G  G  D 
Sbjct: 287 IAELLDCLTVALDNDKIISVEVDQVYMVFKDMK-RKHCEPDEYTYTIMIRMTGKIGKADE 345

Query: 452 AIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
           ++ LF+EM+E G   N++    +IQ L   R +D  + +F   ++   +P+      +L+
Sbjct: 346 SLTLFQEMTEKGYTPNLIAYNTMIQALANNRMVDKTIFLFSKMVENNCRPNGFTFSVILN 405

Query: 512 VV 513
           V+
Sbjct: 406 VL 407



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 79/364 (21%), Positives = 145/364 (39%), Gaps = 42/364 (11%)

Query: 217 EIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV 276
           +++++  TY  ++    R N  ++A E +  + + G   D   Y+ +LD  AK  K+   
Sbjct: 220 DLQMNCYTYKCLLQAHLRSNNSNKAFEVYVELRRRGYKLDIFAYNMLLDALAKDNKLTWN 279

Query: 277 LSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA 336
           L L    +A       +A     K+   S + D +  V ++MK    +P+   Y  ++  
Sbjct: 280 LLLVCLQIAELLDCLTVALDN-DKII--SVEVDQVYMVFKDMKRKHCEPDEYTYTIMIRM 336

Query: 337 MGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWP-- 394
            GK GK   + +LF EM E G TP+      +I+     R     + L+ +M EN     
Sbjct: 337 TGKIGKADESLTLFQEMTEKGYTPNLIAYNTMIQALANNRMVDKTIFLFSKMVENNCRPN 396

Query: 395 ------------------------------MDFILYNTLLNMCADIGLVEEAERLFE--- 421
                                         M+  +Y  L+   + +G   EA RL     
Sbjct: 397 GFTFSVILNVLVAEGQLGRLDEVVEVSNKFMNKSIYAYLVRTLSKLGHASEAHRLLHLQY 456

Query: 422 DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
           D    D  + D  +Y +ML      G    A++L  ++ E  ++ + +    ++  LGK 
Sbjct: 457 DWSFHD--EGDRDAYMSMLESLCDAGKTTEALDLLSKIHEKRISTDTVMYNTVLSALGKL 514

Query: 482 RRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAF 539
           ++  DL  ++      G  PD      L+S        E+  K+   L+ ++  P +++F
Sbjct: 515 KKTSDLHDLYEKMKQDGPSPDIFSYNILISSFGRAGRVEEAVKIFEELENSSCKPDIISF 574

Query: 540 LNLI 543
            +LI
Sbjct: 575 NSLI 578


>gi|224113511|ref|XP_002316516.1| predicted protein [Populus trichocarpa]
 gi|222865556|gb|EEF02687.1| predicted protein [Populus trichocarpa]
          Length = 761

 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 95/339 (28%), Positives = 155/339 (45%), Gaps = 19/339 (5%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIIT- 230
            FN    + L P   I YN+ +K L + G   Q + Q+ NEM  N    D  TY+ +I  
Sbjct: 378 LFNAALGKGLKP-TVILYNMLIKGLCQEGLILQAL-QMMNEMSENGCSSDIWTYNLVING 435

Query: 231 -CAKRC-----NLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
            C   C     NL ++AI         G +PD  T++ ++D Y K  K+E  + +  +  
Sbjct: 436 LCKMGCVSDANNLMNDAIA-------KGYVPDVFTFNTLIDGYCKQLKMETTIQILNKMW 488

Query: 285 ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344
           + G  PD I ++ +     ++   + +    + M   G  PN + YN L E++ KAGK  
Sbjct: 489 SHGVTPDVITYNSVLNGLSKAVKNEDLMETFETMVEKGCVPNKITYNILTESLCKAGKVN 548

Query: 345 LARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN-KWPMDFILYNTL 403
            A  L DE++  G+TPD  +   +I  +      K A +L+ RM E  K       YN +
Sbjct: 549 EALDLVDEILNKGITPDTVSFATIISGFANNGDLKGAYQLFRRMGEQYKVSHTTATYNIM 608

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           +N  A+   +   E+LF +M     C PD Y+Y  M++ +   GN D+  +   EM E G
Sbjct: 609 INAFAEKLDLHMGEKLFLEMGAGG-CAPDTYTYRVMIDGFCITGNTDSGYKFLLEMIEKG 667

Query: 464 VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
              ++     +I CL    R+ + V +    +  G+ P+
Sbjct: 668 FIPSLTTFGRVINCLCVQHRVHEAVDIIHFMVHNGIVPE 706



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 84/348 (24%), Positives = 154/348 (44%), Gaps = 3/348 (0%)

Query: 156 NALL-ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMV 214
           NA++ IL    ++++++  F  +K+  + P +   + + +KS    ++     +L N MV
Sbjct: 115 NAIMNILVESGYFKQAHKVFLRMKNVGIVP-DVYTFTIRIKSFCRTKRPHSALRLLNNMV 173

Query: 215 SNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVE 274
           S   +L+ + Y T++      N   EA E F  M + G+ PD  T++ +L    K G+V+
Sbjct: 174 SQGCQLNAVAYCTVVAGFYEENYRVEAYELFNDMLRIGIFPDVSTFNKLLHTLCKKGEVQ 233

Query: 275 EVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLL 334
           E   L  + +  G   +   F++  +     G   G   +L  +   G+ P++V YNTL+
Sbjct: 234 ESERLLNKVLKKGMCSNLFTFNIFIQGLCRKGMLSGAMSMLDSVIREGLTPDVVTYNTLI 293

Query: 335 EAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWP 394
             + K      A     ++V  GL PD  T   LI  Y K    ++A ++ +      + 
Sbjct: 294 CGLCKNSNVVEAEKYLHKLVNGGLEPDGFTYNTLIDGYCKMGMLQNAEKILQGAICKGFV 353

Query: 395 MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIE 454
            D   Y +L+N       ++ A  LF +  L    KP    Y  ++      G +  A++
Sbjct: 354 PDEFTYCSLINGLCQNDEIDRALALF-NAALGKGLKPTVILYNMLIKGLCQEGLILQALQ 412

Query: 455 LFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           +  EMSE G + ++     +I  L K   + D   +   +I +G  PD
Sbjct: 413 MMNEMSENGCSSDIWTYNLVINGLCKMGCVSDANNLMNDAIAKGYVPD 460



 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/258 (23%), Positives = 121/258 (46%), Gaps = 1/258 (0%)

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
           E+  +++V+  +E D  TY+T+I    +  +   A +  +     G +PDE TY ++++ 
Sbjct: 306 EKYLHKLVNGGLEPDGFTYNTLIDGYCKMGMLQNAEKILQGAICKGFVPDEFTYCSLING 365

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
             ++ +++  L+L+   +  G KP  I +++L K   + G       ++ EM   G   +
Sbjct: 366 LCQNDEIDRALALFNAALGKGLKPTVILYNMLIKGLCQEGLILQALQMMNEMSENGCSSD 425

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
           +  YN ++  + K G    A +L ++ +  G  PD  T   LI  Y K    +  +++  
Sbjct: 426 IWTYNLVINGLCKMGCVSDANNLMNDAIAKGYVPDVFTFNTLIDGYCKQLKMETTIQILN 485

Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
           +M  +    D I YN++LN  +     E+    FE M +   C P+  +Y  +       
Sbjct: 486 KMWSHGVTPDVITYNSVLNGLSKAVKNEDLMETFETM-VEKGCVPNKITYNILTESLCKA 544

Query: 447 GNVDNAIELFEEMSELGV 464
           G V+ A++L +E+   G+
Sbjct: 545 GKVNEALDLVDEILNKGI 562



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 130/283 (45%), Gaps = 3/283 (1%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D +TY+T+I    + +   EA ++  ++   GL PD  TY+ ++D Y K G ++    + 
Sbjct: 285 DVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLEPDGFTYNTLIDGYCKMGMLQNAEKIL 344

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
           +  +  G+ PD   +  L     ++ + D    +       G++P +++YN L++ + + 
Sbjct: 345 QGAICKGFVPDEFTYCSLINGLCQNDEIDRALALFNAALGKGLKPTVILYNMLIKGLCQE 404

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G    A  + +EM E+G + D  T   +I    K     DA  L        +  D   +
Sbjct: 405 GLILQALQMMNEMSENGCSSDIWTYNLVINGLCKMGCVSDANNLMNDAIAKGYVPDVFTF 464

Query: 401 NTLLN-MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           NTL++  C  + + E   ++   M  S    PD  +Y ++LN        ++ +E FE M
Sbjct: 465 NTLIDGYCKQLKM-ETTIQILNKM-WSHGVTPDVITYNSVLNGLSKAVKNEDLMETFETM 522

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            E G   N +    L + L KA ++++ + +    +++G+ PD
Sbjct: 523 VEKGCVPNKITYNILTESLCKAGKVNEALDLVDEILNKGITPD 565



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 92/406 (22%), Positives = 166/406 (40%), Gaps = 53/406 (13%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNI----T 224
           K+   FN +K ++ F    + Y   ++ L F   F  +E   N +    +++DN      
Sbjct: 22  KALEMFNKVKREDGFKHSLLTYKCIIQKLGFHGNFVAME---NVLAETRMDIDNSLLEGV 78

Query: 225 YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
           Y   +    R     EA++ FERM      P  ++Y+AI+++  +SG  ++   ++ R  
Sbjct: 79  YIGAMKSYGRKGKVQEAVDVFERMDFYNCEPSVLSYNAIMNILVESGYFKQAHKVFLRMK 138

Query: 285 ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344
             G  PD   F++  K F  +        +L  M S G Q N V Y T++    +     
Sbjct: 139 NVGIVPDVYTFTIRIKSFCRTKRPHSALRLLNNMVSQGCQLNAVAYCTVVAGFYEENYRV 198

Query: 345 LARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER----------------- 387
            A  LF++M+  G+ PD  T   L+    K    +++  L  +                 
Sbjct: 199 EAYELFNDMLRIGIFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLFTFNIFI 258

Query: 388 -------------------MRENKWPMDFILYNTLL-NMCADIGLVEEAERLFEDMKLSD 427
                              +RE   P D + YNTL+  +C +  +V EAE+    + ++ 
Sbjct: 259 QGLCRKGMLSGAMSMLDSVIREGLTP-DVVTYNTLICGLCKNSNVV-EAEKYLHKL-VNG 315

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
             +PD ++Y  +++ Y   G + NA ++ +     G   +      LI  L +   ID  
Sbjct: 316 GLEPDGFTYNTLIDGYCKMGMLQNAEKILQGAICKGFVPDEFTYCSLINGLCQNDEIDRA 375

Query: 488 VRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN 533
           + +F  ++ +G+KP   L   L+    LC+     G ++  LQ  N
Sbjct: 376 LALFNAALGKGLKPTVILYNMLIK--GLCQE----GLILQALQMMN 415


>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic [Vitis vinifera]
          Length = 772

 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 111/476 (23%), Positives = 201/476 (42%), Gaps = 45/476 (9%)

Query: 59  TKTLSLSEQLKPLSSTTLSPTKNDRTPLLSKPKS--TWVNPTKPRRSVLSLQRQKRSTYS 116
           T T    +Q    S +TLSP+   + P    PK     +       S+L L        +
Sbjct: 41  TSTHHHDQQAVSPSFSTLSPSPTTQLPQNFTPKQLRDALRRQSDEDSILDLLDWASKQPN 100

Query: 117 YNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQ--PTRENALLIL----NSLKFWQKS 170
           + P     +   RKL   D +  +  R + E+ H     R    LIL       + + ++
Sbjct: 101 FVPSSVIYEEVLRKLGK-DGSFGSMRRVLQEMKHTGCEIRRGTFLILIESYAKFELFDEA 159

Query: 171 YFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIIT 230
               + ++ +    ++   YN  +  L  G + +L+E + + MVS  I+ D  T++ +I 
Sbjct: 160 VAVVDIMEEEFGLKLDAFTYNFLLNVLVDGNKLKLVEIVNSRMVSRGIKPDVTTFNILIK 219

Query: 231 CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
              R +    AI   E M   GL PDE T++ ++  + + G +   L + E+ VA+G   
Sbjct: 220 ALCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGNMNGALRIREQMVAAGCPS 279

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
             +  +VL   + + G  + +   + EM + G +P+   +N+L+  + + G    A  + 
Sbjct: 280 SNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALEIL 339

Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
           D M++ G  PD  T  +LI    K    ++A+E+  +M    +  + + YNTL++     
Sbjct: 340 DVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTLISTLCKE 399

Query: 411 GLVEEAE-----------------------------------RLFEDMKLSDYCKPDNYS 435
             VEEA                                     LFE+MK +  C PD ++
Sbjct: 400 NQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFEEMK-TKGCHPDEFT 458

Query: 436 YTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           Y  +++   S G ++ A+ L +EM   G + NV+    LI    K +RI++   +F
Sbjct: 459 YNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIF 514



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 158/344 (45%), Gaps = 12/344 (3%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           ++ N+M+  +   + +TY+T+I+   + N  +EA E    +   G++PD  T+++++   
Sbjct: 372 EILNQMILRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGL 431

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
             +      + L+E     G  PD   +++L       G  +    +L+EM+S G   N+
Sbjct: 432 CLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNV 491

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
           V YNTL++   K  +   A  +FDEM   G++ +  T   LI    K R  ++A +L ++
Sbjct: 492 VTYNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQ 551

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           M       D   YN+LL      G +++A  + + M  S+ C+PD+ +Y  ++      G
Sbjct: 552 MLMEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMT-SNGCEPDSVTYGTLILGLSKAG 610

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCG 507
            V+ A  L   +   G+ +       +I+ L + +R  + VR+F   +++G  PD     
Sbjct: 611 RVELASRLLRTVQLKGMVLAPQTYNPVIKALFREKRTSEAVRLFREMMEKGDPPD----A 666

Query: 508 CLLSVV--SLCETSEDVGKVITCLQQAN-----PKLVAFLNLIE 544
               VV   LC     +G+ +  L +       P   +FL L E
Sbjct: 667 VTYKVVFRGLCSGGGPIGEAVDFLVEMTDKGFLPDFSSFLMLAE 710



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 80/281 (28%), Positives = 132/281 (46%), Gaps = 1/281 (0%)

Query: 183 FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
           F   T+ YN  + +L    Q +   +LA  + S  I  D  T++++I      N    A+
Sbjct: 382 FSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAM 441

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
           E FE M   G  PDE TY+ ++D     G++EE LSL +   +SG   + + ++ L   F
Sbjct: 442 ELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGF 501

Query: 303 GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
            ++   +    +  EM+  G+  N+V YNTL++ + K  +   A  L D+M+  GL PD+
Sbjct: 502 CKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDK 561

Query: 363 KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED 422
            T  +L+  + +A   K A ++ + M  N    D + Y TL+   +  G VE A RL   
Sbjct: 562 FTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVELASRLLRT 621

Query: 423 MKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           ++L         +Y  ++           A+ LF EM E G
Sbjct: 622 VQLKGMVLAPQ-TYNPVIKALFREKRTSEAVRLFREMMEKG 661



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 75/333 (22%), Positives = 148/333 (44%), Gaps = 38/333 (11%)

Query: 191 NVTMKSLRFG--RQFQLIEQLA--NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
           NVT+  L  G  ++ ++ E L+  +EM +     D  T+++++    R      A+E  +
Sbjct: 281 NVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALEILD 340

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
            M + G  PD  TY++++    K G+VEE + +  + +   + P+ + ++ L     +  
Sbjct: 341 VMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTLISTLCKEN 400

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
             +    + + + S G+ P++  +N+L++ +       LA  LF+EM   G  PDE T  
Sbjct: 401 QVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYN 460

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
            LI         ++AL L + M  +    + + YNTL++       +EEAE +F++M+L 
Sbjct: 461 MLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDEMELQ 520

Query: 427 ----------------------------------DYCKPDNYSYTAMLNIYGSGGNVDNA 452
                                             +  KPD ++Y ++L  +   G++  A
Sbjct: 521 GISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLTYFCRAGDIKKA 580

Query: 453 IELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
            ++ + M+  G   + +    LI  L KA R++
Sbjct: 581 ADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVE 613



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 125/265 (47%), Gaps = 3/265 (1%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F  +K++   P E   YN+ + SL    + +    L  EM S+    + +TY+T+I   
Sbjct: 443 LFEEMKTKGCHPDE-FTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGF 501

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +    +EA E F+ M   G+  + VTY+ ++D   K+ +VEE   L ++ +  G KPD 
Sbjct: 502 CKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDK 561

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
             ++ L   F  +GD      ++Q M S G +P+ V Y TL+  + KAG+  LA  L   
Sbjct: 562 FTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVELASRLLRT 621

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL-NMCADIG 411
           +   G+    +T   +IK   + +   +A+ L+  M E   P D + Y  +   +C+  G
Sbjct: 622 VQLKGMVLAPQTYNPVIKALFREKRTSEAVRLFREMMEKGDPPDAVTYKVVFRGLCSGGG 681

Query: 412 LVEEAERLFEDMKLSDYCKPDNYSY 436
            + EA     +M    +  PD  S+
Sbjct: 682 PIGEAVDFLVEMTDKGFL-PDFSSF 705



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/261 (21%), Positives = 102/261 (39%), Gaps = 17/261 (6%)

Query: 251 TGLMPDEVTYSAILDVYAKSGKVEEVLSLYE-RGVASGWKPDPIAFSVLGKMFGESGDYD 309
           T  +P   T   + D   +    + +L L +       + P  + +  + +  G+ G + 
Sbjct: 63  TTQLPQNFTPKQLRDALRRQSDEDSILDLLDWASKQPNFVPSSVIYEEVLRKLGKDGSFG 122

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMV--------ESGLTPD 361
            +R VLQEMK  G +     +  L+E+  K         LFDE V        E GL  D
Sbjct: 123 SMRRVLQEMKHTGCEIRRGTFLILIESYAKF-------ELFDEAVAVVDIMEEEFGLKLD 175

Query: 362 EKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFE 421
             T   L+ +       K    +  RM       D   +N L+        +  A  + E
Sbjct: 176 AFTYNFLLNVLVDGNKLKLVEIVNSRMVSRGIKPDVTTFNILIKALCRAHQIRPAILMME 235

Query: 422 DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
           +M  S    PD  ++T ++  +   GN++ A+ + E+M   G   + +    L+    K 
Sbjct: 236 EMG-SYGLSPDEKTFTTLMQGFIEEGNMNGALRIREQMVAAGCPSSNVTVNVLVHGYCKE 294

Query: 482 RRIDDLVRVFGVSIDRGVKPD 502
            RI++++       + G +PD
Sbjct: 295 GRIEEVLSFIDEMSNEGFRPD 315


>gi|357120470|ref|XP_003561950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 925

 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 87/317 (27%), Positives = 153/317 (48%), Gaps = 7/317 (2%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L + M  + +  + +TY+ ++         D A+  F  M K G +P+  +Y+ ++  Y 
Sbjct: 387 LFHRMSRDGVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIRGYC 446

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
             G  E+ +S+    +     P  + ++++ K + +SGD D    VL+ MK+ G QP+  
Sbjct: 447 TIGDTEKAMSMLTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKANGCQPDEW 506

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            Y  L+    K  K  LA  +F+EM++ GL P+E T TALI  Y K      A  + ERM
Sbjct: 507 SYTELISGFCKISKMELASGMFNEMMDRGLCPNEVTYTALISGYCKDEKLDCAARMLERM 566

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
           + +    +   YN L++          AE L + M L +   PD  +Y+ ++N   + G 
Sbjct: 567 KRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVM-LEEKISPDVVTYSTVINGLCNNGA 625

Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGC 508
           +  A+E+F +M + G   N+   + LIQ LG+  R+++   +F     +G+ PD+     
Sbjct: 626 IPLALEMFNKMVKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFSELKKQGLIPDE----- 680

Query: 509 LLSVVSLCETSEDVGKV 525
            ++ V + E     GKV
Sbjct: 681 -VTYVKMIEVCVMSGKV 696



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 123/280 (43%), Gaps = 41/280 (14%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           TY+T++    + N+    ++ + ++ + GL P+ + Y+++++   K G V +  S+  + 
Sbjct: 195 TYTTLLIQLNKLNMTSTVMDRYHQILREGLQPNLLIYNSVINALCKDGNVRDAESIINKV 254

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
             SG KPD   ++ +   +  + D D    +   M   G +PN   Y+TL+  +  +G+ 
Sbjct: 255 FKSGMKPDTFTYTSMILGYCRNRDLDSAFEIFNRMDEEGCEPNAATYSTLINGLCNSGRV 314

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
             A     EM   G+ P   T TA I                                  
Sbjct: 315 NEALDFISEMTRHGVLPTVHTFTAPI---------------------------------- 340

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDN-AIELFEEMSEL 462
           + +C D+G +E+A ++F DMK    CKP+ Y+YT+++    SG  V   AI LF  MS  
Sbjct: 341 VALC-DMGRIEDAWKIFIDMK-KKGCKPNVYTYTSLI----SGQRVSRMAIGLFHRMSRD 394

Query: 463 GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           GV  N +    L+  L +   ID  + VF +    G  P+
Sbjct: 395 GVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPN 434



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 149/354 (42%), Gaps = 5/354 (1%)

Query: 158 LLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNE 217
           L+ LN L         ++ I  + L P   + YN  + +L      +  E + N++  + 
Sbjct: 200 LIQLNKLNMTSTVMDRYHQILREGLQP-NLLIYNSVINALCKDGNVRDAESIINKVFKSG 258

Query: 218 IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL 277
           ++ D  TY+++I    R    D A E F RM + G  P+  TYS +++    SG+V E L
Sbjct: 259 MKPDTFTYTSMILGYCRNRDLDSAFEIFNRMDEEGCEPNAATYSTLINGLCNSGRVNEAL 318

Query: 278 SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
                    G  P    F+       + G  +    +  +MK  G +PN+  Y +L+   
Sbjct: 319 DFISEMTRHGVLPTVHTFTAPIVALCDMGRIEDAWKIFIDMKKKGCKPNVYTYTSLISGQ 378

Query: 338 GKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDF 397
             +    +A  LF  M   G+ P+  T  AL+ +  +      AL ++  M ++    + 
Sbjct: 379 RVS---RMAIGLFHRMSRDGVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNT 435

Query: 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE 457
             YN L+     IG  E+A  +  +M L     P   +Y  ++  Y   G+ D AI + E
Sbjct: 436 SSYNELIRGYCTIGDTEKAMSMLTNM-LKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLE 494

Query: 458 EMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
            M   G   +    T LI    K  +++    +F   +DRG+ P++     L+S
Sbjct: 495 LMKANGCQPDEWSYTELISGFCKISKMELASGMFNEMMDRGLCPNEVTYTALIS 548



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/253 (23%), Positives = 125/253 (49%), Gaps = 1/253 (0%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           + YN+ +K         +  ++   M +N  + D  +Y+ +I+   + +  + A   F  
Sbjct: 471 VTYNIIIKGYCDSGDTDVAIRVLELMKANGCQPDEWSYTELISGFCKISKMELASGMFNE 530

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M   GL P+EVTY+A++  Y K  K++    + ER   SG +P+   ++VL     +  +
Sbjct: 531 MMDRGLCPNEVTYTALISGYCKDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLTKQNN 590

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
           + G   + + M    + P++V Y+T++  +   G   LA  +F++MV+ G  P+  T ++
Sbjct: 591 FSGAEELCKVMLEEKISPDVVTYSTVINGLCNNGAIPLALEMFNKMVKHGCLPNLHTYSS 650

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           LI+  G+    ++A E++  +++     D + Y  ++ +C   G V+ A     +M ++ 
Sbjct: 651 LIQALGQEGRVEEAEEMFSELKKQGLIPDEVTYVKMIEVCVMSGKVDRAFDFLGEM-INA 709

Query: 428 YCKPDNYSYTAML 440
            C+P   +Y  ++
Sbjct: 710 GCQPTLQTYDVLI 722



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 136/317 (42%), Gaps = 20/317 (6%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YNV +  L     F   E+L   M+  +I  D +TYST+I           A+E F +M 
Sbjct: 578 YNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVVTYSTVINGLCNNGAIPLALEMFNKMV 637

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
           K G +P+  TYS+++    + G+VEE   ++      G  PD + +  + ++   SG  D
Sbjct: 638 KHGCLPNLHTYSSLIQALGQEGRVEEAEEMFSELKKQGLIPDEVTYVKMIEVCVMSGKVD 697

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT--PDEKTLTA 367
                L EM + G QP L  Y+ L+            + L +EMV   L   P+     A
Sbjct: 698 RAFDFLGEMINAGCQPTLQTYDVLI------------KGLQNEMVYHKLVALPN----AA 741

Query: 368 LIKIYGKARWAKDALE-LWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
               +      KD +  L  ++ E  + +   LY+ LL+  +  G   EA  L+  M   
Sbjct: 742 STSTFDDQIINKDVISVLSSKLAELDFELSRQLYDALLSRLSRSGRWFEANNLYRSMVSQ 801

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
             C P+  +Y   L        VD A+++F+ MS+    +++ G   LI  L +  R  +
Sbjct: 802 SQC-PNQDTYKHFLISLLRALKVDLAMDVFKHMSDQRCELHLTGYKELICTLCQLHRRKE 860

Query: 487 LVRVFGVSIDRGVKPDD 503
              VF   + R +  D+
Sbjct: 861 ARFVFEKMLSRALNADE 877


>gi|225446761|ref|XP_002278350.1| PREDICTED: pentatricopeptide repeat-containing protein At3g59040
           [Vitis vinifera]
 gi|302143502|emb|CBI22063.3| unnamed protein product [Vitis vinifera]
          Length = 548

 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 89/358 (24%), Positives = 167/358 (46%), Gaps = 11/358 (3%)

Query: 158 LLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQ--FQLIEQLANEMVS 215
           L+    LK W        W+++Q  +    +  +  M    +G+Q  F   E++  +M  
Sbjct: 111 LVRFKQLKKWSLVSEILEWLQTQPWWDFSEM--DFLMLVTAYGKQGDFNKAERVFGDMHK 168

Query: 216 NEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEE 275
                  I+++ ++    +   +++A   F RM  +G  P  +TY  IL ++ +  K +E
Sbjct: 169 KGYSPSVISHTALMEAYGKGKQYNKAESVFRRMLSSGPEPSALTYQLILKIFVEGNKFKE 228

Query: 276 VLSLYERGV---ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNT 332
               +E  +    S  KPD   F ++  M+ ++G+Y+  R +   M+  GV  + V YN+
Sbjct: 229 AEETFETLLDDEKSPLKPDQKMFHMMIYMYRKAGNYEKARKIFGLMRERGVPQSTVTYNS 288

Query: 333 LLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENK 392
           L+       +       +D+M  +GL PD  +   LI  YGKAR  ++AL ++E M +  
Sbjct: 289 LMSFETNYKE---VSKTYDQMQRAGLRPDVVSYALLINAYGKARREEEALAVFEEMLDAG 345

Query: 393 WPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNA 452
                  YN LL+  A  G+V++A  +F+ M+  D C PD  SYT ML+ Y +  +++ A
Sbjct: 346 VRPTHKAYNILLDAFAISGMVDQARTVFKSMR-RDRCTPDICSYTTMLSAYVNASDMEGA 404

Query: 453 IELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
            + F  + + G   NV+    LI+   K   ++ ++  +      G+K +  +   ++
Sbjct: 405 EKFFRRLKQDGFEPNVVTYGTLIKGYAKISNLEKMMEKYEEMQVHGIKANQAIYTAMM 462



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 154/334 (46%), Gaps = 15/334 (4%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
            I +   M++   G+Q+   E +   M+S+  E   +TY  I+      N F EA E FE
Sbjct: 175 VISHTALMEAYGKGKQYNKAESVFRRMLSSGPEPSALTYQLILKIFVEGNKFKEAEETFE 234

Query: 247 RMY---KTGLMPDEVTYSAILDVYAKSGKVEEVLSLY----ERGVASGWKPDPIAFSVLG 299
            +    K+ L PD+  +  ++ +Y K+G  E+   ++    ERGV       P +     
Sbjct: 235 TLLDDEKSPLKPDQKMFHMMIYMYRKAGNYEKARKIFGLMRERGV-------PQSTVTYN 287

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
            +     +Y  +     +M+  G++P++V Y  L+ A GKA +   A ++F+EM+++G+ 
Sbjct: 288 SLMSFETNYKEVSKTYDQMQRAGLRPDVVSYALLINAYGKARREEEALAVFEEMLDAGVR 347

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
           P  K    L+  +  +     A  +++ MR ++   D   Y T+L+   +   +E AE+ 
Sbjct: 348 PTHKAYNILLDAFAISGMVDQARTVFKSMRRDRCTPDICSYTTMLSAYVNASDMEGAEKF 407

Query: 420 FEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479
           F  +K  D  +P+  +Y  ++  Y    N++  +E +EEM   G+  N    T ++   G
Sbjct: 408 FRRLK-QDGFEPNVVTYGTLIKGYAKISNLEKMMEKYEEMQVHGIKANQAIYTAMMDAYG 466

Query: 480 KARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVV 513
           K +     V  F      GV PD +    LLS+ 
Sbjct: 467 KNKDFGSAVFWFKEMGFCGVPPDRKATNILLSLA 500



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 134/283 (47%), Gaps = 11/283 (3%)

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
           W    + F +L   +G+ GD++    V  +M   G  P+++ +  L+EA GK  +   A 
Sbjct: 136 WDFSEMDFLMLVTAYGKQGDFNKAERVFGDMHKKGYSPSVISHTALMEAYGKGKQYNKAE 195

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN-KWPM--DFILYNTLL 404
           S+F  M+ SG  P   T   ++KI+ +    K+A E +E + ++ K P+  D  +++ ++
Sbjct: 196 SVFRRMLSSGPEPSALTYQLILKIFVEGNKFKEAEETFETLLDDEKSPLKPDQKMFHMMI 255

Query: 405 NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
            M    G  E+A ++F  M+          +Y ++++      N     + +++M   G+
Sbjct: 256 YMYRKAGNYEKARKIFGLMRERG-VPQSTVTYNSLMSF---ETNYKEVSKTYDQMQRAGL 311

Query: 465 AINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGK 524
             +V+    LI   GKARR ++ + VF   +D GV+P  +    LL   ++    +    
Sbjct: 312 RPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQART 371

Query: 525 VITCLQ--QANPKLVAFLNLIED--NSTGFENIKEEFRNVIKD 563
           V   ++  +  P + ++  ++    N++  E  ++ FR + +D
Sbjct: 372 VFKSMRRDRCTPDICSYTTMLSAYVNASDMEGAEKFFRRLKQD 414



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 58/253 (22%), Positives = 116/253 (45%), Gaps = 4/253 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           ++K+   F  ++ + + P  T+ YN  M    F   ++ + +  ++M    +  D ++Y+
Sbjct: 264 YEKARKIFGLMRERGV-PQSTVTYNSLMS---FETNYKEVSKTYDQMQRAGLRPDVVSYA 319

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
            +I    +    +EA+  FE M   G+ P    Y+ +LD +A SG V++  ++++     
Sbjct: 320 LLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKSMRRD 379

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
              PD  +++ +   +  + D +G     + +K  G +PN+V Y TL++   K       
Sbjct: 380 RCTPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFEPNVVTYGTLIKGYAKISNLEKM 439

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
              ++EM   G+  ++   TA++  YGK +    A+  ++ M     P D    N LL++
Sbjct: 440 MEKYEEMQVHGIKANQAIYTAMMDAYGKNKDFGSAVFWFKEMGFCGVPPDRKATNILLSL 499

Query: 407 CADIGLVEEAERL 419
                  EEA  L
Sbjct: 500 AKTEAEKEEANLL 512


>gi|302761794|ref|XP_002964319.1| hypothetical protein SELMODRAFT_63559 [Selaginella moellendorffii]
 gi|300168048|gb|EFJ34652.1| hypothetical protein SELMODRAFT_63559 [Selaginella moellendorffii]
          Length = 384

 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 95/326 (29%), Positives = 149/326 (45%), Gaps = 6/326 (1%)

Query: 241 AIEWFERMYKTGLMPDEVTYSAILDVYAKS-GKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           A   F RM K G     VTY+ I+  Y +   K++  L L E    SG KPD I ++ L 
Sbjct: 1   ACSLFYRMMKDGCEATVVTYTVIIHGYLRQKSKLDHALRLLEVMKESGKKPDEILYNCLV 60

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
                SG  +    +L +MK   V  NLV Y  L++    AG+    R LF EM + G +
Sbjct: 61  NGLVNSGRLEAAEKILDDMKQDKVSANLVTYTNLIKEYANAGRLQDCRKLFQEMKDKGES 120

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
           P+  T  ALI+ YG+    K+ALEL++ M       D   YN  + M    GL+E+ ERL
Sbjct: 121 PNSWTYNALIQGYGRKGLFKEALELYDEMDGVGCAKDVHTYNIAIAMYGKRGLLEDMERL 180

Query: 420 FEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479
            ++M       PD  +Y  +L++Y        A E+  EM+E G   N+     ++    
Sbjct: 181 LDEMDTKG-VPPDQVTYNTLLDVYAKKSYFVKAHEILREMTEAGYRPNIWTYNIMLSSAR 239

Query: 480 KARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLV 537
           K + + +  ++F     +GV P+      +LS+        +  K+   + +A   P ++
Sbjct: 240 KEQSVAEATQLFENLKSKGVVPNIVTYSAMLSLYGRHGLYTEAAKLWDEMIEAGCIPCII 299

Query: 538 AFLNLIEDNSTGFENIKEEFRNVIKD 563
           A+  LIE  S G   + +E     +D
Sbjct: 300 AYSGLIE--SYGHHGMYQEALACFQD 323



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 95/387 (24%), Positives = 176/387 (45%), Gaps = 17/387 (4%)

Query: 126 LFARKLND-CDNTEEAFLRAITEIPHQPTR-ENALLILNSLKFWQKSYFFFNWIKSQNLF 183
           LF R + D C+ T   +   I     Q ++ ++AL +L  +K   K              
Sbjct: 4   LFYRMMKDGCEATVVTYTVIIHGYLRQKSKLDHALRLLEVMKESGKK------------- 50

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           P E I YN  +  L    + +  E++ ++M  +++  + +TY+ +I          +  +
Sbjct: 51  PDE-ILYNCLVNGLVNSGRLEAAEKILDDMKQDKVSANLVTYTNLIKEYANAGRLQDCRK 109

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
            F+ M   G  P+  TY+A++  Y + G  +E L LY+     G   D   +++   M+G
Sbjct: 110 LFQEMKDKGESPNSWTYNALIQGYGRKGLFKEALELYDEMDGVGCAKDVHTYNIAIAMYG 169

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
           + G  + +  +L EM + GV P+ V YNTLL+   K      A  +  EM E+G  P+  
Sbjct: 170 KRGLLEDMERLLDEMDTKGVPPDQVTYNTLLDVYAKKSYFVKAHEILREMTEAGYRPNIW 229

Query: 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
           T   ++    K +   +A +L+E ++      + + Y+ +L++    GL  EA +L+++M
Sbjct: 230 TYNIMLSSARKEQSVAEATQLFENLKSKGVVPNIVTYSAMLSLYGRHGLYTEAAKLWDEM 289

Query: 424 KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483
            +   C P   +Y+ ++  YG  G    A+  F++M + G+  +    T L+   GKA R
Sbjct: 290 -IEAGCIPCIIAYSGLIESYGHHGMYQEALACFQDMRKSGIVPDTKIYTALMDAYGKAGR 348

Query: 484 IDDLVRVFGVSIDRGVKPDDRLCGCLL 510
             +   ++      G  PD    G L+
Sbjct: 349 CREAELLYFEMTKEGFVPDGITYGILV 375



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 141/305 (46%), Gaps = 1/305 (0%)

Query: 180 QNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFD 239
           Q+      + Y   +K      + Q   +L  EM       ++ TY+ +I    R  LF 
Sbjct: 81  QDKVSANLVTYTNLIKEYANAGRLQDCRKLFQEMKDKGESPNSWTYNALIQGYGRKGLFK 140

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           EA+E ++ M   G   D  TY+  + +Y K G +E++  L +     G  PD + ++ L 
Sbjct: 141 EALELYDEMDGVGCAKDVHTYNIAIAMYGKRGLLEDMERLLDEMDTKGVPPDQVTYNTLL 200

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
            ++ +   +     +L+EM   G +PN+  YN +L +  K      A  LF+ +   G+ 
Sbjct: 201 DVYAKKSYFVKAHEILREMTEAGYRPNIWTYNIMLSSARKEQSVAEATQLFENLKSKGVV 260

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
           P+  T +A++ +YG+     +A +LW+ M E       I Y+ L+      G+ +EA   
Sbjct: 261 PNIVTYSAMLSLYGRHGLYTEAAKLWDEMIEAGCIPCIIAYSGLIESYGHHGMYQEALAC 320

Query: 420 FEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479
           F+DM+ S    PD   YTA+++ YG  G    A  L+ EM++ G   + +    L++   
Sbjct: 321 FQDMRKSGIV-PDTKIYTALMDAYGKAGRCREAELLYFEMTKEGFVPDGITYGILVRAFA 379

Query: 480 KARRI 484
            A R+
Sbjct: 380 NAGRL 384



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 83/322 (25%), Positives = 146/322 (45%), Gaps = 11/322 (3%)

Query: 213 MVSNEIELDNITYSTIITCAKRC-NLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG 271
           M+ +  E   +TY+ II    R  +  D A+   E M ++G  PDE+ Y+ +++    SG
Sbjct: 8   MMKDGCEATVVTYTVIIHGYLRQKSKLDHALRLLEVMKESGKKPDEILYNCLVNGLVNSG 67

Query: 272 KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYN 331
           ++E    + +         + + ++ L K +  +G     R + QEMK  G  PN   YN
Sbjct: 68  RLEAAEKILDDMKQDKVSANLVTYTNLIKEYANAGRLQDCRKLFQEMKDKGESPNSWTYN 127

Query: 332 TLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN 391
            L++  G+ G    A  L+DEM   G   D  T    I +YGK    +D   L + M   
Sbjct: 128 ALIQGYGRKGLFKEALELYDEMDGVGCAKDVHTYNIAIAMYGKRGLLEDMERLLDEMDTK 187

Query: 392 KWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDN 451
             P D + YNTLL++ A      +A  +  +M  + Y +P+ ++Y  ML+      +V  
Sbjct: 188 GVPPDQVTYNTLLDVYAKKSYFVKAHEILREMTEAGY-RPNIWTYNIMLSSARKEQSVAE 246

Query: 452 AIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
           A +LFE +   GV  N++  + ++   G+     +  +++   I+ G  P      C+++
Sbjct: 247 ATQLFENLKSKGVVPNIVTYSAMLSLYGRHGLYTEAAKLWDEMIEAGCIP------CIIA 300

Query: 512 VVSLCETSEDVG---KVITCLQ 530
              L E+    G   + + C Q
Sbjct: 301 YSGLIESYGHHGMYQEALACFQ 322



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 117/289 (40%), Gaps = 47/289 (16%)

Query: 346 ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD-ALELWERMRENKWPMDFILYNTLL 404
           A SLF  M++ G      T T +I  Y + +   D AL L E M+E+    D ILYN L+
Sbjct: 1   ACSLFYRMMKDGCEATVVTYTVIIHGYLRQKSKLDHALRLLEVMKESGKKPDEILYNCLV 60

Query: 405 NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
           N   + G +E AE++ +DMK  D    +  +YT ++  Y + G + +  +LF+EM + G 
Sbjct: 61  NGLVNSGRLEAAEKILDDMK-QDKVSANLVTYTNLIKEYANAGRLQDCRKLFQEMKDKGE 119

Query: 465 AINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGK 524
           + N      LIQ  G+                          G     + L +  + VG 
Sbjct: 120 SPNSWTYNALIQGYGRK-------------------------GLFKEALELYDEMDGVG- 153

Query: 525 VITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRP---FCNCLIDICR 581
              C +  +   +A          G   + E+   ++ + +     P     N L+D+  
Sbjct: 154 ---CAKDVHTYNIAI------AMYGKRGLLEDMERLLDEMDTKGVPPDQVTYNTLLDVYA 204

Query: 582 NRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALE 630
            ++   +AHE+L   T  G  P +       W+ ++   S    Q+  E
Sbjct: 205 KKSYFVKAHEILREMTEAGYRPNI-------WTYNIMLSSARKEQSVAE 246


>gi|356573733|ref|XP_003555011.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79490,
           mitochondrial-like [Glycine max]
          Length = 752

 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 118/509 (23%), Positives = 222/509 (43%), Gaps = 33/509 (6%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
           T+F N   K L + + F++ E +     S    LD  TY  +I    +    D A + F+
Sbjct: 202 TLFLN---KGLPY-KAFEMYESMEKAGCS----LDGSTYELMIPNLAKSGRLDAAFKLFQ 253

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
            M   G  P    +++++D   K+G+++  + +Y      G+KP P  +  L + + +SG
Sbjct: 254 EMKVRGFRPGLNVFASLVDSMGKAGRLDSAMKVYMEMRGYGYKPPPTIYVSLIESYVKSG 313

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
             +    +  EM+  G +PN  +Y  ++E+  K+GK  +A S F +M ++G  P   T  
Sbjct: 314 KLETALRLWDEMRMAGFRPNFGLYTLIIESHAKSGKLEIAMSTFLDMEKAGFLPTPSTYA 373

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
            L++++  +     A++L+  M           Y  LL + A+  LV+ A ++  +MK  
Sbjct: 374 CLLEMHAASGQIDPAMKLYNSMTNAGLRPGLSTYTVLLTLLANKKLVDVAAKILLEMKAM 433

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
            Y    + + + +L +Y   G+VD A+     M   G+  N      L +   K+   + 
Sbjct: 434 GYSV--DVTASDILMVYIKEGSVDLALRWLRFMGSSGIRTNNFIIRQLFESCMKSGLFES 491

Query: 487 LVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDN 546
              +    ++   K D  L   +L+ +  C+  ++   +++ L     K  +F+  +   
Sbjct: 492 AKPLLETYVNSAAKVDLILYTSILAHLVRCQEEKNERHLMSILSATKHKAHSFMCGL--- 548

Query: 547 STGFEN--------IKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTL 598
            TG E+        ++E F+ +  + E  A + F N L++         RA  +  +   
Sbjct: 549 FTGPEHRGQPVLTFVREFFQGIDYELEEGAAKYFVNVLLNYLVLMGQINRARCVWKVAYE 608

Query: 599 YGLYPGLHNKTLDE---WSLDVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQLFLAETG 655
             L+P       D+   WSLDVR+LSVGAA  A+   +    K +L   ++P+     TG
Sbjct: 609 NKLFP--KAIVFDQHIAWSLDVRNLSVGAALIAVVHTLHRFRKRMLYYGIVPRRIKLVTG 666

Query: 656 TGTHKFSQGLATAFASHVNKLAAPFRQSE 684
                    L    A  ++ + +PF  S+
Sbjct: 667 A-------TLKIVIAQMLSSVESPFEVSK 688



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 82/332 (24%), Positives = 153/332 (46%), Gaps = 9/332 (2%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST--IIT 230
            F W K Q  +      Y +    L   R F+ I+ L +EMV +  +  ++  +   +I 
Sbjct: 108 LFRWAKRQAWYVPSDDCYVMLFDGLNQKRDFEGIQLLFDEMVGDSADGVSLFAACNRVIR 167

Query: 231 CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
              +    + +   F+++   G   D  TY++++ ++   G   +   +YE    +G   
Sbjct: 168 YLAKAEKLEVSFCCFKKILNAGCKVDTETYNSLITLFLNKGLPYKAFEMYESMEKAGCSL 227

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
           D   + ++     +SG  D    + QEMK  G +P L V+ +L+++MGKAG+   A  ++
Sbjct: 228 DGSTYELMIPNLAKSGRLDAAFKLFQEMKVRGFRPGLNVFASLVDSMGKAGRLDSAMKVY 287

Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
            EM   G  P      +LI+ Y K+   + AL LW+ MR   +  +F LY  ++   A  
Sbjct: 288 MEMRGYGYKPPPTIYVSLIESYVKSGKLETALRLWDEMRMAGFRPNFGLYTLIIESHAKS 347

Query: 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG 470
           G +E A   F DM+ + +  P   +Y  +L ++ + G +D A++L+  M+  G+   +  
Sbjct: 348 GKLEIAMSTFLDMEKAGFL-PTPSTYACLLEMHAASGQIDPAMKLYNSMTNAGLRPGLST 406

Query: 471 CTCLIQCLGKARRIDDLVRVF------GVSID 496
            T L+  L   + +D   ++       G S+D
Sbjct: 407 YTVLLTLLANKKLVDVAAKILLEMKAMGYSVD 438


>gi|22773251|gb|AAN06857.1| Hypothetical protein [Oryza sativa Japonica Group]
          Length = 769

 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 143/309 (46%), Gaps = 29/309 (9%)

Query: 159 LILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEI 218
           +IL   K W+++   FNW + +    +  I YNV + ++   R++ L+ +L +EM S  +
Sbjct: 113 IILKEQKDWRRAVEIFNWFRRRRRHEVNVIHYNVVLCAVGRARRWDLVARLWHEMHSGGV 172

Query: 219 ELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS 278
             DN TY T+I    +      A+ W   M K GL+PDE+T S +L V+ K+G+ E+   
Sbjct: 173 APDNSTYGTLIDVHCKGGRERMALLWLGDMIKRGLLPDEITMSIVLQVHKKAGEYEKAEL 232

Query: 279 LYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMG 338
            ++R     W  +        KM G                      +L  YNTL++  G
Sbjct: 233 FFKR-----WSLESDV-----KMKGHPC------------------YSLYTYNTLIDTYG 264

Query: 339 KAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFI 398
           KAG+       F++M+  G++P+  T   +I ++GK R  +    L   M E +   D  
Sbjct: 265 KAGQLEKVSDTFNQMLREGVSPNVVTFNTMIHVWGKHRRMEQVASLMRTMEEFQCLPDTR 324

Query: 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458
            YN L+++  +I  ++ AE  F  MK  +   PD  S   +L  Y   G V  A  L +E
Sbjct: 325 TYNILISLYREINDIDVAEYYFRKMKAENLL-PDVVSCRTLLYGYSIKGMVTEAQALLKE 383

Query: 459 MSELGVAIN 467
           M E  + I+
Sbjct: 384 MYERNMVID 392



 Score =  103 bits (256), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 61/266 (22%), Positives = 134/266 (50%), Gaps = 2/266 (0%)

Query: 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
            DEA E  + M + G++PD +TYS+++ + + +   E+ L    +  A+    D + +SV
Sbjct: 475 LDEACEIADGMERYGILPDYLTYSSLIHLMSTAKLPEKALYYLRKMQAAKLLIDCVPYSV 534

Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
           +   F ++G+   +  + +EM + G+Q +  VY+ L++A  + G    A + F  + ++G
Sbjct: 535 VISCFAKNGNLHMVDCLFREMITSGIQADTYVYSILIDAYAEVGDVQKAEAYFGLLKKAG 594

Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417
           L        +LIK+Y K  +  +A + ++ ++      +    N ++++ +D  +V+EA 
Sbjct: 595 LCESATIYNSLIKLYTKVVYLAEAQKTYKLLKSLNADTNLYASNCMIDLYSDHCMVKEAR 654

Query: 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
            +FE++K++   K + +S+  M+ +Y      D A  + ++M   G     +    +IQ 
Sbjct: 655 EIFENLKVTG--KANEFSHAMMVCLYKKIARFDEAHRISKKMQASGFLTQALSYNSVIQM 712

Query: 478 LGKARRIDDLVRVFGVSIDRGVKPDD 503
                R++D +++F   +     P+D
Sbjct: 713 YVSGGRMEDALKIFQKMLASNTPPND 738



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 86/427 (20%), Positives = 162/427 (37%), Gaps = 52/427 (12%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           FN +  + + P   + +N  +      R+ + +  L   M   +   D  TY+ +I+  +
Sbjct: 276 FNQMLREGVSP-NVVTFNTMIHVWGKHRRMEQVASLMRTMEEFQCLPDTRTYNILISLYR 334

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
             N  D A  +F +M    L+PD V+   +L  Y+  G V E  +L +         D  
Sbjct: 335 EINDIDVAEYYFRKMKAENLLPDVVSCRTLLYGYSIKGMVTEAQALLKEMYERNMVIDEY 394

Query: 294 AFSVLGKMFGESGDYDGIRYVLQE----MKSLGVQPNLVVYNTLLEAMGKAGKPGLARSL 349
             S + +M+ ++G       +L++     +    Q N   ++  ++A G+ G   LA   
Sbjct: 395 TQSAVTRMYVDAG-------MLEQAWCWFEKFNYQLNSECFSANIDAFGERGHILLAEKA 447

Query: 350 FDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCAD 409
           F   ++  +         +IK YG      +A E+ + M       D++ Y++L+++ + 
Sbjct: 448 FMCCIKRKML-STCVCNVMIKAYGLVEKLDEACEIADGMERYGILPDYLTYSSLIHLMST 506

Query: 410 IGLVEEAERLFEDM---KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
             L E+A      M   KL   C P    Y+ +++ +   GN+     LF EM   G+  
Sbjct: 507 AKLPEKALYYLRKMQAAKLLIDCVP----YSVVISCFAKNGNLHMVDCLFREMITSGIQA 562

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           +    + LI    +   +      FG                LL    LCE++     +I
Sbjct: 563 DTYVYSILIDAYAEVGDVQKAEAYFG----------------LLKKAGLCESATIYNSLI 606

Query: 527 TCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLN 586
               +        + L E   T           ++K    D      NC+ID+  +  + 
Sbjct: 607 KLYTKV-------VYLAEAQKT---------YKLLKSLNADTNLYASNCMIDLYSDHCMV 650

Query: 587 ERAHELL 593
           + A E+ 
Sbjct: 651 KEAREIF 657


>gi|255582603|ref|XP_002532083.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528243|gb|EEF30297.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 841

 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 120/512 (23%), Positives = 220/512 (42%), Gaps = 27/512 (5%)

Query: 185 METIFYNVTMKS-LRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           ++T  YN  + S L  G  ++  E +   M + +  LD  TY  +I    +    D A +
Sbjct: 286 IDTQTYNALITSFLNKGLPYKAFE-IYESMQAAQCSLDASTYELMIPSLAKSGRLDVAFK 344

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
            F+ M +  + P    +S+++D   KSG+++  + +Y      G +     +  L + + 
Sbjct: 345 LFQEMKERKIRPSFGIFSSLVDSMGKSGRLDTSMKIYMEMQGFGLRSSASMYVSLIESYT 404

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
           ++G  D    +  EMK  G +PN  +Y  ++E+  K+GK  +A S+F +M ++G  P   
Sbjct: 405 KAGKLDTALRLWDEMKKAGFRPNYGLYTLIIESHAKSGKLDIATSIFKDMDKAGFLPTPS 464

Query: 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
           T + L++++  +     A++L+  M           Y  LL + A   LV+ A ++  +M
Sbjct: 465 TYSCLLEMHAASGQVDSAMKLYNSMTNAGLKPGLSTYTALLTLLASKKLVDVAAKILLEM 524

Query: 424 KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483
           K   +    + S + +L +Y   G+VD A+     M   G+  N      L +   K   
Sbjct: 525 KAMGFSV--DVSASDVLMVYIKDGSVDLALRWLSFMGSSGIRTNNFIIRQLFESCMKKGL 582

Query: 484 IDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLI 543
            +    +    ++   K D  L   +L+ +  C+  +    +++ L     K  AF+  +
Sbjct: 583 YESAKPLLETYVNSAAKVDLILYTSILANLVRCQEEQHERHLMSILGATRHKAHAFMCGL 642

Query: 544 EDNSTGFEN--------IKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYL 595
               TG E         ++E F+ +  D E  A + F N L++         RA  +  +
Sbjct: 643 ---FTGPEQRQQPVLFFVREFFQGIDYDLEEGAAKYFVNVLLNYLVLMGQINRARCVWKV 699

Query: 596 GTLYGLYPGLHNKTLDE---WSLDVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQLFLA 652
                L+P       D+   WSLDVR+LSVGAA  A+   +    K +L   V+P+    
Sbjct: 700 AYENKLFP--KAIVFDQHIAWSLDVRNLSVGAALIAVVHTLHRFRKRMLYYGVVPRRIKL 757

Query: 653 ETGTGTHKFSQGLATAFASHVNKLAAPFRQSE 684
            TG         L    A  ++ + +PF  S+
Sbjct: 758 VTGP-------TLKIVVAQMLSSVESPFEVSK 782



 Score =  115 bits (289), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 79/333 (23%), Positives = 161/333 (48%), Gaps = 10/333 (3%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMV--SNEIELDNI-TYSTII 229
            F W K Q  + ++   Y +    L   R F  I+ L +EMV  S++  + ++  Y+ +I
Sbjct: 201 LFKWAKRQTWYVVDDECYALLFDGLNKIRDFDGIQSLFDEMVQDSSKGGISSVYAYNRVI 260

Query: 230 TCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWK 289
               +    + +   F+++  +G   D  TY+A++  +   G   +   +YE   A+   
Sbjct: 261 QHLAKAEKLELSFCCFKKVQDSGCKIDTQTYNALITSFLNKGLPYKAFEIYESMQAAQCS 320

Query: 290 PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSL 349
            D   + ++     +SG  D    + QEMK   ++P+  ++++L+++MGK+G+   +  +
Sbjct: 321 LDASTYELMIPSLAKSGRLDVAFKLFQEMKERKIRPSFGIFSSLVDSMGKSGRLDTSMKI 380

Query: 350 FDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCAD 409
           + EM   GL        +LI+ Y KA     AL LW+ M++  +  ++ LY  ++   A 
Sbjct: 381 YMEMQGFGLRSSASMYVSLIESYTKAGKLDTALRLWDEMKKAGFRPNYGLYTLIIESHAK 440

Query: 410 IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVM 469
            G ++ A  +F+DM  + +  P   +Y+ +L ++ + G VD+A++L+  M+  G+   + 
Sbjct: 441 SGKLDIATSIFKDMDKAGFL-PTPSTYSCLLEMHAASGQVDSAMKLYNSMTNAGLKPGLS 499

Query: 470 GCTCLIQCLGKARRIDDLVRVF------GVSID 496
             T L+  L   + +D   ++       G S+D
Sbjct: 500 TYTALLTLLASKKLVDVAAKILLEMKAMGFSVD 532


>gi|218190347|gb|EEC72774.1| hypothetical protein OsI_06434 [Oryza sativa Indica Group]
          Length = 579

 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 95/366 (25%), Positives = 169/366 (46%), Gaps = 34/366 (9%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           +++  F  +K ++  P    +  +   S + GR  + +    +EMVS    L+ I ++TI
Sbjct: 181 QAFQVFEDMKQKHCVPDAYTYTILIRMSGKAGRTSKFL-SFFDEMVSKGCVLNLIAFNTI 239

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVE---EVL-------- 277
           I    +  + D+ I    +M +    P++ TYS  LD+ A  G++    EVL        
Sbjct: 240 IEALGKNKMVDKVIFVLSKMVENDCQPNQFTYSITLDILATEGQLHRLNEVLDICSRFMN 299

Query: 278 -SLYERGVASGWKPDPI--AFSVLGKMFG--ESGDYDGIRYVLQ---------------- 316
            S+Y   V S  K      A +V  +M+   E GD D    +L+                
Sbjct: 300 RSIYSYLVKSLCKSGHASEAHNVFCRMWNSHEKGDRDAFVSMLEVLCNAEKTLEAIDLLH 359

Query: 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
            M   G+  ++ +YN +  A+GK  +     +LFD+M  +G+ PD  T   +I  YG+  
Sbjct: 360 MMPEKGIVTDVGMYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVG 419

Query: 377 WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY 436
               A EL+E M  +    D + YN+L+N     G ++EA  LF++M+   Y  PD ++Y
Sbjct: 420 LVDKASELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGY-DPDVFTY 478

Query: 437 TAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496
           + ++  +G    V+ A  LF+EM   G   N++    L+ CL +  + ++  +++     
Sbjct: 479 SILIECFGKSNKVEMACSLFDEMISEGCTPNIVTYNILLDCLERRGKTEEAHKLYETMKQ 538

Query: 497 RGVKPD 502
           +G+ PD
Sbjct: 539 QGLIPD 544



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 98/405 (24%), Positives = 177/405 (43%), Gaps = 72/405 (17%)

Query: 194 MKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGL 253
           ++S    + FQ+ E    EM     +LD   Y+ ++    +  + D+A + FE M +   
Sbjct: 139 LRSREVSKGFQVYE----EMRRKGYKLDIFAYNMLLDALAKAGMVDQAFQVFEDMKQKHC 194

Query: 254 MPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRY 313
           +PD  TY+ ++ +  K+G+  + LS ++  V+ G   + IAF+ + +  G++   D + +
Sbjct: 195 VPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEALGKNKMVDKVIF 254

Query: 314 VLQEMKSLGVQPNLV--------------------------------VYNTLLEAMGKAG 341
           VL +M     QPN                                  +Y+ L++++ K+G
Sbjct: 255 VLSKMVENDCQPNQFTYSITLDILATEGQLHRLNEVLDICSRFMNRSIYSYLVKSLCKSG 314

Query: 342 KPGLARSLFDEMVESGLTPD--------------EKTLTAL--------------IKIY- 372
               A ++F  M  S    D              EKTL A+              + +Y 
Sbjct: 315 HASEAHNVFCRMWNSHEKGDRDAFVSMLEVLCNAEKTLEAIDLLHMMPEKGIVTDVGMYN 374

Query: 373 ------GKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
                 GK +       L+++M+ N    D   YN +++    +GLV++A  LFE M+ S
Sbjct: 375 MVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEAS 434

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
             CKPD  +Y +++N  G  G++D A  LF+EM E G   +V   + LI+C GK+ +++ 
Sbjct: 435 S-CKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEM 493

Query: 487 LVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ 531
              +F   I  G  P+      LL  +     +E+  K+   ++Q
Sbjct: 494 ACSLFDEMISEGCTPNIVTYNILLDCLERRGKTEEAHKLYETMKQ 538



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 100/187 (53%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN+   +L   +Q   I  L ++M +N I  D  TY+ +I+   R  L D+A E FE M 
Sbjct: 373 YNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVME 432

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
            +   PD VTY+++++   K G ++E   L++     G+ PD   +S+L + FG+S   +
Sbjct: 433 ASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVE 492

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               +  EM S G  PN+V YN LL+ + + GK   A  L++ M + GL PD  T + L 
Sbjct: 493 MACSLFDEMISEGCTPNIVTYNILLDCLERRGKTEEAHKLYETMKQQGLIPDSITYSILE 552

Query: 370 KIYGKAR 376
           ++  +++
Sbjct: 553 RLESRSQ 559



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 87/159 (54%)

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
           F++M   G++PD  TY+ ++  Y + G V++   L+E   AS  KPD + ++ L    G+
Sbjct: 393 FDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTYNSLINCLGK 452

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
            GD D    + +EM+  G  P++  Y+ L+E  GK+ K  +A SLFDEM+  G TP+  T
Sbjct: 453 HGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIVT 512

Query: 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
              L+    +    ++A +L+E M++     D I Y+ L
Sbjct: 513 YNILLDCLERRGKTEEAHKLYETMKQQGLIPDSITYSIL 551



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 101/200 (50%), Gaps = 1/200 (0%)

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           EAI+    M + G++ D   Y+ +     K  +V  + +L+++   +G  PD   ++++ 
Sbjct: 353 EAIDLLHMMPEKGIVTDVGMYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMI 412

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
             +G  G  D    + + M++   +P++V YN+L+  +GK G    A  LF EM E G  
Sbjct: 413 SSYGRVGLVDKASELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYD 472

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
           PD  T + LI+ +GK+   + A  L++ M       + + YN LL+     G  EEA +L
Sbjct: 473 PDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIVTYNILLDCLERRGKTEEAHKL 532

Query: 420 FEDMKLSDYCKPDNYSYTAM 439
           +E MK      PD+ +Y+ +
Sbjct: 533 YETMKQQGLI-PDSITYSIL 551



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 87/352 (24%), Positives = 142/352 (40%), Gaps = 68/352 (19%)

Query: 218 IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL 277
           + L   TY  I+    R     +  + +E M + G   D   Y+ +LD  AK+G V++  
Sbjct: 124 LRLSGYTYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQAF 183

Query: 278 SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
            ++E        PD   +++L +M G++G          EM S G   NL+ +NT++EA+
Sbjct: 184 QVFEDMKQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEAL 243

Query: 338 GKAGKPGLARSLFDEMVESGLTPDEKTLTA------------------------------ 367
           GK         +  +MVE+   P++ T +                               
Sbjct: 244 GKNKMVDKVIFVLSKMVENDCQPNQFTYSITLDILATEGQLHRLNEVLDICSRFMNRSIY 303

Query: 368 --LIKIYGKARWAKDALELWERM--------RENKWPMDFILYNT--------LLNMCAD 409
             L+K   K+  A +A  ++ RM        R+    M  +L N         LL+M  +
Sbjct: 304 SYLVKSLCKSGHASEAHNVFCRMWNSHEKGDRDAFVSMLEVLCNAEKTLEAIDLLHMMPE 363

Query: 410 IGLVEEA-------------------ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
            G+V +                      LF+ MK ++   PD ++Y  M++ YG  G VD
Sbjct: 364 KGIVTDVGMYNMVFSALGKLKQVSFISNLFDKMK-TNGIIPDVFTYNIMISSYGRVGLVD 422

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            A ELFE M       +V+    LI CLGK   +D+   +F    ++G  PD
Sbjct: 423 KASELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPD 474



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 52/116 (44%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + YN  +  L           L  EM     + D  TYS +I C  + N  + A   F
Sbjct: 439 DVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLF 498

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKM 301
           + M   G  P+ VTY+ +LD   + GK EE   LYE     G  PD I +S+L ++
Sbjct: 499 DEMISEGCTPNIVTYNILLDCLERRGKTEEAHKLYETMKQQGLIPDSITYSILERL 554



 Score = 45.1 bits (105), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 27/125 (21%), Positives = 64/125 (51%), Gaps = 4/125 (3%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           +++  F  ++ +   P +   Y++ ++      + ++   L +EM+S     + +TY+ +
Sbjct: 458 EAHMLFKEMQEKGYDP-DVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIVTYNIL 516

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
           + C +R    +EA + +E M + GL+PD +TYS +  + ++S   +  + + +    SGW
Sbjct: 517 LDCLERRGKTEEAHKLYETMKQQGLIPDSITYSILERLESRS---QRTVRIRKPTRISGW 573

Query: 289 KPDPI 293
              P+
Sbjct: 574 VVSPL 578


>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
 gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
          Length = 924

 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 154/315 (48%), Gaps = 1/315 (0%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           + YN  +  L   +     E +  +M+   ++ D++TY+TII    +    D+A   F++
Sbjct: 296 VTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQ 355

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M   G+ PD +TY+ I+D   K+  V+    ++++ +  G KP+   ++ L   +  +G 
Sbjct: 356 MIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQ 415

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
           ++ +   ++EM +  ++P++  Y  LL+ + K GK   ARSLFD M+  G+ P       
Sbjct: 416 WEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGI 475

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           ++  YGK     +  +L   M  N    +  ++NT++   A   +++E   +F  MK   
Sbjct: 476 MLHGYGKKGALSEMHDLLNLMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQG 535

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
              P+  +Y  +++     G VD+A+  F +M   GV  N +    L+  L    + + +
Sbjct: 536 L-SPNVVTYGTLIDALCKLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKV 594

Query: 488 VRVFGVSIDRGVKPD 502
             +F   +++G++PD
Sbjct: 595 EELFLEMLNQGIRPD 609



 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 153/353 (43%), Gaps = 36/353 (10%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + YN  +  L   ++    E +  +MV   ++ +N+TY+TII    +    D A   F
Sbjct: 224 DVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVF 283

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           ++M   G+ P  VTY+ I+D   K+  V+    ++++ +  G KPD + ++ +     ++
Sbjct: 284 QKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKA 343

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
              D    V Q+M   GV+P+ + Y  +++ + KA     A  +F +M++ G+ P+  T 
Sbjct: 344 QAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTY 403

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
             LI  Y      ++ ++  + M  +    D   Y  LL+     G   EA  LF+ M +
Sbjct: 404 NCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSM-I 462

Query: 426 SDYCKPDNYSYTAMLNIYGSGGN-----------------------------------VD 450
               KP    Y  ML+ YG  G                                    +D
Sbjct: 463 RKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGISPNHRIFNTVICAYAKRAMID 522

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
             + +F +M + G++ NV+    LI  L K  R+DD V  F   I+ GV P++
Sbjct: 523 EVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMINEGVTPNN 575



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 82/329 (24%), Positives = 160/329 (48%), Gaps = 7/329 (2%)

Query: 185 METIFYNVTMKSLRFGRQFQLIEQLANEMVSNE---IELDNITYSTIITCAKRCNLFDEA 241
           +  + YN  +K L   R+ +   +L + MV  +      D ++Y+ +I         D+A
Sbjct: 153 LGVVSYNTLLKGLCDRRRAEEARELLHMMVDGQDSSCSPDVVSYNIVINGFFNEGQVDKA 212

Query: 242 IEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKM 301
              F  M   G+ PD VTY+ I+D   K+ +V+    ++++ V  G KP+ + ++ +   
Sbjct: 213 YSLFLEM---GVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNTIIDG 269

Query: 302 FGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD 361
             ++ + D    V Q+M   GV+P+ V YNT+++ + KA     A  +F +M++ G+ PD
Sbjct: 270 LCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPD 329

Query: 362 EKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFE 421
             T   +I    KA+    A  ++++M +     D + Y  +++       V+ AE +F+
Sbjct: 330 HVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQ 389

Query: 422 DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
            M +    KP+N +Y  +++ Y S G  +  ++  +EMS   +  +V     L+  L K 
Sbjct: 390 QM-IDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKN 448

Query: 482 RRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
            + ++   +F   I +G+KP   + G +L
Sbjct: 449 GKCNEARSLFDSMIRKGIKPSVTIYGIML 477



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 148/335 (44%), Gaps = 43/335 (12%)

Query: 215 SNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVE 274
           SN++  D  TYS +I C  R    +     F  + KTG   D++  + +L     + +V 
Sbjct: 77  SNKVAPDCCTYSIVIGCFCRIGRLELGFAAFGLILKTGWRVDDIVVNQLLKGLCDTKRVG 136

Query: 275 EVLSLYER---------------------------------------GVASGWKPDPIAF 295
           E + +  R                                       G  S   PD +++
Sbjct: 137 EAMHVLLRQMPEVGCRLGVVSYNTLLKGLCDRRRAEEARELLHMMVDGQDSSCSPDVVSY 196

Query: 296 SVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVE 355
           +++   F   G  D    +  EM   GV P++V YNT+++ + KA +   A  +F +MVE
Sbjct: 197 NIVINGFFNEGQVDKAYSLFLEM---GVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVE 253

Query: 356 SGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEE 415
            G+ P+  T   +I    KA+    A  ++++M +       + YNT+++       V+ 
Sbjct: 254 KGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDR 313

Query: 416 AERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLI 475
           AE +F+ M +    KPD+ +Y  +++       +D A  +F++M + GV  + +  T +I
Sbjct: 314 AEGVFQQM-IDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIII 372

Query: 476 QCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
             L KA+ +D    VF   ID+GVKP++    CL+
Sbjct: 373 DGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLI 407



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/352 (21%), Positives = 151/352 (42%), Gaps = 36/352 (10%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + YN  +  L   +     E +  +M+   ++ DN+TY+ II    +    D A   F
Sbjct: 329 DHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVF 388

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           ++M   G+ P+  TY+ ++  Y  +G+ EEV+   +   A   +PD   + +L     ++
Sbjct: 389 QQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKN 448

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G  +  R +   M   G++P++ +Y  +L   GK G       L + MV +G++P+ +  
Sbjct: 449 GKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGISPNHRIF 508

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEA--------- 416
             +I  Y K     + + ++ +M++     + + Y TL++    +G V++A         
Sbjct: 509 NTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMIN 568

Query: 417 --------------------------ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
                                     E LF +M L+   +PD   +  +L      G V 
Sbjct: 569 EGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEM-LNQGIRPDIVFFNTVLCNLCKEGRVM 627

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            A  L + M  +G+  +V+    LI     A R+D+ V++    +  G+KP+
Sbjct: 628 EARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPN 679



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 86/341 (25%), Positives = 167/341 (48%), Gaps = 8/341 (2%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITC 231
            F  +K Q L P   + Y   + +L + GR    + Q  N+M++  +  +N+ +++++  
Sbjct: 527 IFIKMKQQGLSP-NVVTYGTLIDALCKLGRVDDAVLQF-NQMINEGVTPNNVVFNSLVYG 584

Query: 232 AKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291
               + +++  E F  M   G+ PD V ++ +L    K G+V E   L +  V  G KPD
Sbjct: 585 LCTVDKWEKVEELFLEMLNQGIRPDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPD 644

Query: 292 PIAFSVL--GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSL 349
            I+++ L  G  F    D + ++ +L  M S G++PN+V YNTLL    KAG+   A  L
Sbjct: 645 VISYNTLIDGHCFASRMD-EAVK-LLDGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCL 702

Query: 350 FDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCAD 409
           F EM+  G+TP  +T   ++    ++    +A EL+  M +++       Y+ +L+    
Sbjct: 703 FREMLRKGVTPGVETYNTILNGLFRSGRFSEARELYVNMIKSRKLWSICTYSIILDGFCK 762

Query: 410 IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVM 469
               +EA ++F+ +   D  + D  ++  M++    GG  ++A++LF  +   G+  +V+
Sbjct: 763 NNCFDEAFKIFQSLCSMDL-QLDIITFNIMIDGLFKGGRKEDAMDLFAAIPANGLVPSVV 821

Query: 470 GCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
               + + L +   +++L  +F V    G  P+  +   L+
Sbjct: 822 TYRLIAENLIEEGSLEELDCLFSVMEKSGTAPNSHMLNALI 862



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/221 (22%), Positives = 100/221 (45%), Gaps = 3/221 (1%)

Query: 170 SYFFFNWIKSQNLFP-METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           +Y  F  +  + + P +ET  YN  +  L    +F    +L   M+ +       TYS I
Sbjct: 699 AYCLFREMLRKGVTPGVET--YNTILNGLFRSGRFSEARELYVNMIKSRKLWSICTYSII 756

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
           +    + N FDEA + F+ +    L  D +T++ ++D   K G+ E+ + L+    A+G 
Sbjct: 757 LDGFCKNNCFDEAFKIFQSLCSMDLQLDIITFNIMIDGLFKGGRKEDAMDLFAAIPANGL 816

Query: 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348
            P  + + ++ +   E G  + +  +   M+  G  PN  + N L+  +   G+   A +
Sbjct: 817 VPSVVTYRLIAENLIEEGSLEELDCLFSVMEKSGTAPNSHMLNALIRKLLDRGEIPRAGA 876

Query: 349 LFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMR 389
              ++ E   + +  T + LI ++ +  + + A  L E+ R
Sbjct: 877 YLSKLDEKNFSLEASTTSMLISLFSREEYQQHAKSLPEKCR 917


>gi|296087909|emb|CBI35192.3| unnamed protein product [Vitis vinifera]
          Length = 1001

 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 82/319 (25%), Positives = 146/319 (45%), Gaps = 1/319 (0%)

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           P  T+ +N  + S+   +    +  L+ +M S  I  D  T + +I      N  D A  
Sbjct: 42  PPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIVINSLCHLNRVDFAFS 101

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
              ++ K G  PD  T++ ++      GK+ E L L+++ +  G++P+ + +  L     
Sbjct: 102 ALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLC 161

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
           +         +  EM + G+ PN+V YN+L+  + K  +     +L +EMV+S + PD  
Sbjct: 162 KDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVF 221

Query: 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
           TL  ++    K     +A ++ + M       + + YN L++       V+ A ++F+ M
Sbjct: 222 TLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTM 281

Query: 424 KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483
              D C  +  SY  ++N Y    +VD A+ LFEEMS   +  N +    LI  L    R
Sbjct: 282 VHKD-CVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGR 340

Query: 484 IDDLVRVFGVSIDRGVKPD 502
           + D + +F   + RG  PD
Sbjct: 341 LQDAISLFHEMVARGQIPD 359



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 110/449 (24%), Positives = 191/449 (42%), Gaps = 53/449 (11%)

Query: 69  KPLSSTTLSPTKNDRTPLLSK--PKSTW--------VNPTKPRRSVLSLQRQKRSTYSYN 118
           KPL   TL    +    +L K  P ST         +  TK   ++LSL RQ  S +   
Sbjct: 19  KPLHFNTLDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDS-FGIP 77

Query: 119 PRVRDLKLFARKLNDCDNTEEAF--LRAITEIPHQPTRENALLILNSL----KFWQKSYF 172
           P V  L +    L   +  + AF  L  I ++ HQP       ++  L    K  +  + 
Sbjct: 78  PDVYTLAIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHL 137

Query: 173 F----------------------------------FNWIKSQNLFPMETIFYNVTMKSLR 198
           F                                  F+ + ++ + P   + YN  +  L 
Sbjct: 138 FDKMIGEGFQPNVVTYGTLINGLCKDRQVTEAFNIFSEMITKGISP-NIVTYNSLIHGLC 196

Query: 199 FGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEV 258
              +++ +  L NEMV ++I  D  T +T++    +  +  EA +  + M   G+ P+ V
Sbjct: 197 KLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVV 256

Query: 259 TYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEM 318
           TY+A++D +    +V+  + +++  V      + I+++ L   + +    D   Y+ +EM
Sbjct: 257 TYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEM 316

Query: 319 KSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWA 378
               + PN V YNTL+  +   G+   A SLF EMV  G  PD  T   L     K R  
Sbjct: 317 SRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHL 376

Query: 379 KDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTA 438
             A+ L + +  + W  D  +Y T+L+     G +E+A  LF ++  S   +P+ ++Y  
Sbjct: 377 DKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLS-SKGLQPNVWTYNI 435

Query: 439 MLNIYGSGGNVDNAIELFEEMSELGVAIN 467
           M++     G +  A +LF EM++ G + N
Sbjct: 436 MIHGLCKQGLLAEASKLFSEMNKNGCSPN 464



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 99/387 (25%), Positives = 177/387 (45%), Gaps = 22/387 (5%)

Query: 78  PTKNDRTPLLSKPKSTWVNPTKPRRSVLSLQRQKRSTYSYNPRVRDLKLFARKLNDCDNT 137
           P+  D T LL     T +   K   +VLSL  Q  S +   P V  L +           
Sbjct: 579 PSTVDFTKLL-----TSIAKMKHYSTVLSLSTQMDS-FGIPPDVYTLNILINSFCHLRRL 632

Query: 138 EEAF--LRAITEIPHQPTRENALLILNSL-KFWQKSYFFFNWIKSQNLFPMETIFYNVTM 194
             AF  L  + ++  QP       ++N L K   K         S ++F      YN  +
Sbjct: 633 GYAFSVLAKLLKLGFQPDVVTYGTLMNGLCKMITKGI-------SPDIFT-----YNSLI 680

Query: 195 KSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLM 254
            +L    +++ +  L NEMV+++I  + + +ST++    +  +   A +  + M K G+ 
Sbjct: 681 HALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVE 740

Query: 255 PDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYV 314
           PD VTY+A++D +    +++E + +++  V  G  P+  ++++L   + +    D    +
Sbjct: 741 PDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGL 800

Query: 315 LQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK 374
           L++M   G+  + V YNTL+  +   G+   A +LF EMV SG  PD  T   L+    K
Sbjct: 801 LEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCK 860

Query: 375 ARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNY 434
                +A+ L + +  +    D ++YN  ++     G +E A  LF ++  S   +PD  
Sbjct: 861 NHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLS-SKGLQPDVR 919

Query: 435 SYTAMLNIYGSGGNVDNAIELFEEMSE 461
           +Y  M++     G +D A +LF +M E
Sbjct: 920 TYNIMIHGLCKRGLLDEANKLFRKMDE 946



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 106/227 (46%), Gaps = 8/227 (3%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  EM   E+  + +TY+T+I          +AI  F  M   G +PD VTY  + D   
Sbjct: 312 LFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLC 371

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           K+  +++ ++L +    S W PD   ++ +      +G+ +  R +   + S G+QPN+ 
Sbjct: 372 KNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVW 431

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            YN ++  + K G    A  LF EM ++G +P++ T   + + + +   A   +EL E M
Sbjct: 432 TYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLEEM 491

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYS 435
               + +D      L+ M +D GL +  +++         CKP + S
Sbjct: 492 LARGFSVDVSTTTLLVGMLSDDGLDQSVKQIL--------CKPSSSS 530



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 118/291 (40%), Gaps = 36/291 (12%)

Query: 236 NLFDEAIEWFERMYKT-----------------------------------GLMPDEVTY 260
           N  DEA+  F RM                                      G+ PD  T 
Sbjct: 24  NTLDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTL 83

Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
           + +++      +V+   S   + +  G +PD   F+ L +     G      ++  +M  
Sbjct: 84  AIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIG 143

Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380
            G QPN+V Y TL+  + K  +   A ++F EM+  G++P+  T  +LI    K    K 
Sbjct: 144 EGFQPNVVTYGTLINGLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKH 203

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
              L   M ++K   D    NT+++     G+V EA  +  DM +    +P+  +Y A++
Sbjct: 204 VTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVV-DMMIHRGVEPNVVTYNALM 262

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           + +     VD A+++F+ M       NV+    LI    K + +D  + +F
Sbjct: 263 DGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLF 313



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/289 (24%), Positives = 122/289 (42%), Gaps = 23/289 (7%)

Query: 236 NLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD---- 291
           N  D+A+  F RM      P  V ++ +L   AK      VLSL  +  + G  PD    
Sbjct: 560 NTLDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTL 619

Query: 292 -------------PIAFSVLGKMFGESGDYDGIRYV-----LQEMKSLGVQPNLVVYNTL 333
                          AFSVL K+       D + Y      L +M + G+ P++  YN+L
Sbjct: 620 NILINSFCHLRRLGYAFSVLAKLLKLGFQPDVVTYGTLMNGLCKMITKGISPDIFTYNSL 679

Query: 334 LEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKW 393
           + A+    +     +L +EMV S + P+    + ++    K      A ++ + M +   
Sbjct: 680 IHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGV 739

Query: 394 PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAI 453
             D + Y  L++       ++EA ++F+ M +   C P+  SY  ++N Y     +D A+
Sbjct: 740 EPDVVTYTALMDGHCLRSEMDEAVKVFDTM-VHKGCVPNVRSYNILINGYCQIQRMDKAM 798

Query: 454 ELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            L E+MS  G+  + +    LI  L    R+   + +F   +  G  PD
Sbjct: 799 GLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPD 847



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 101/214 (47%), Gaps = 10/214 (4%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           +Y+ +I    +    D+A+   E+M   GL+ D VTY+ ++      G+++  ++L+   
Sbjct: 780 SYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEM 839

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
           VASG  PD + + +L     ++        +L+ ++   +  +++VYN  ++ M +AG+ 
Sbjct: 840 VASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGEL 899

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENK-WP-------M 395
             AR LF  +   GL PD +T   +I    K     +A +L+ +M EN  W         
Sbjct: 900 EAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDENDIWSNSTSSRNQ 959

Query: 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
             ++Y  +  M  +I LV     +FE M +   C
Sbjct: 960 KSLIYQKI--MLPEIDLVYSISVMFEKMFICHGC 991



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 75/161 (46%), Gaps = 4/161 (2%)

Query: 198 RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDE 257
           R  +   L+EQ++ +     +  D +TY+T+I           AI  F  M  +G +PD 
Sbjct: 793 RMDKAMGLLEQMSLQ----GLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDL 848

Query: 258 VTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQE 317
           VTY  +LD   K+  + E + L +    S    D + +++       +G+ +  R +   
Sbjct: 849 VTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSN 908

Query: 318 MKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
           + S G+QP++  YN ++  + K G    A  LF +M E+ +
Sbjct: 909 LSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDENDI 949


>gi|242067349|ref|XP_002448951.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
 gi|241934794|gb|EES07939.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
          Length = 799

 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 148/299 (49%), Gaps = 7/299 (2%)

Query: 206 IEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
           + Q+  EM +  ++ D  TY +++    +     EA  +F+ M + G+ P   TY  ++ 
Sbjct: 288 VVQMLEEMSARGLKPDCYTYGSLLNYLCKNGRCREARFFFDSMIRKGIKPKVSTYGILIH 347

Query: 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325
            YA  G + E+ S  +  V +G  PD   F++    + + G  D    +  +M+  G+ P
Sbjct: 348 GYATKGALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSP 407

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA---RWAKDAL 382
           N+V Y  L++A+ K G+   A   F++M+  G+TP+     +L  +YG     +W +   
Sbjct: 408 NVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSL--VYGLCTVDKWERAEE 465

Query: 383 ELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNI 442
            ++E + +   P + + +NTL+    ++G V E  RL + M+     +PD +SYT +++ 
Sbjct: 466 LVYEMLDQGICP-NAVFFNTLICNLCNVGRVMEGRRLIDLMEHVG-VRPDAFSYTPLISG 523

Query: 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
           Y   G  D A ++F+ M  +G++   +    L+     A RIDD   +F   + +GV P
Sbjct: 524 YCLTGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTP 582



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 141/319 (44%), Gaps = 1/319 (0%)

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           P   + Y++ +       Q      L  EM+   I  D +TY+T+I    +  LFD A  
Sbjct: 196 PPNVVSYSIVINGFFTEGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCKAQLFDRAEG 255

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
            F++M   G  P+  TY+ ++  Y   GK +EV+ + E   A G KPD   +  L     
Sbjct: 256 VFQQMIDNGFKPNNYTYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLLNYLC 315

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
           ++G     R+    M   G++P +  Y  L+      G      S  D MVE+GL+PD  
Sbjct: 316 KNGRCREARFFFDSMIRKGIKPKVSTYGILIHGYATKGALSEMHSFLDLMVENGLSPDHH 375

Query: 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
                   Y K      A++++ +MR++    + + Y  L++    +G V++AE  F  M
Sbjct: 376 IFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQM 435

Query: 424 KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483
            +++   P+   + +++    +    + A EL  EM + G+  N +    LI  L    R
Sbjct: 436 -INEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGR 494

Query: 484 IDDLVRVFGVSIDRGVKPD 502
           + +  R+  +    GV+PD
Sbjct: 495 VMEGRRLIDLMEHVGVRPD 513



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/322 (24%), Positives = 138/322 (42%), Gaps = 40/322 (12%)

Query: 220 LDNITYSTIITCAKRCNLFDEAIE-WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS 278
           +D+I  + ++          EA++   +RM + G MPD V+Y+ +L       + EE L 
Sbjct: 123 MDHIAINQLLKGLCHGKRVGEAMDVLLQRMPELGCMPDTVSYTILLKGLCNEKRAEEALE 182

Query: 279 LYERGVASGWK---PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLE 335
           L         +   P+ +++S++   F   G  D    +  EM   G+ P++V Y T+++
Sbjct: 183 LLHMMADDHGRRCPPNVVSYSIVINGFFTEGQVDKPYNLFLEMIDRGIPPDVVTYTTVID 242

Query: 336 AMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIY-GKARWAKDALELWERMRENKWP 394
            + KA     A  +F +M+++G  P+  T   LI  Y    +W K+ +++ E M      
Sbjct: 243 GLCKAQLFDRAEGVFQQMIDNGFKPNNYTYNCLIHGYLSIGKW-KEVVQMLEEMSARGLK 301

Query: 395 MDFILYNTLLNMCADIGLVEEAERLFEDM-------KLSDY------------------- 428
            D   Y +LLN     G   EA   F+ M       K+S Y                   
Sbjct: 302 PDCYTYGSLLNYLCKNGRCREARFFFDSMIRKGIKPKVSTYGILIHGYATKGALSEMHSF 361

Query: 429 --------CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK 480
                     PD++ +    + Y   G +D A+++F +M + G++ NV+    LI  L K
Sbjct: 362 LDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCK 421

Query: 481 ARRIDDLVRVFGVSIDRGVKPD 502
             R+DD    F   I+ GV P+
Sbjct: 422 LGRVDDAEVKFNQMINEGVTPN 443



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 154/343 (44%), Gaps = 4/343 (1%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYST 227
           K+   FN ++   L P   + Y   + +L + GR     E   N+M++  +  + + +++
Sbjct: 392 KAMDIFNKMRQHGLSP-NVVNYGALIDALCKLGR-VDDAEVKFNQMINEGVTPNIVVFNS 449

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           ++      + ++ A E    M   G+ P+ V ++ ++      G+V E   L +     G
Sbjct: 450 LVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVG 509

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
            +PD  +++ L   +  +G  D    V   M S+G+ P  V YNTLL     A +   A 
Sbjct: 510 VRPDAFSYTPLISGYCLTGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAY 569

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
            LF EM+  G+TP   T   ++    + +   +A EL+  M  +    D   YN +LN  
Sbjct: 570 CLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGL 629

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
                V+EA ++F+ +  S   + +  ++T M+     GG  ++A++LF  +   G+  N
Sbjct: 630 CKSNCVDEAFKMFQSL-CSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPN 688

Query: 468 VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
           V+    + + L +   +++   +F      G  P+ ++   L+
Sbjct: 689 VVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALV 731



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 85/364 (23%), Positives = 148/364 (40%), Gaps = 62/364 (17%)

Query: 234 RCNLFDE-AIEWFERMYK---TGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWK 289
           RC+   E A+  F RM +     + P+  TYS ++  + + G +E   + +   + +GW+
Sbjct: 63  RCSSASELAVSHFNRMVRECSDKVAPNLCTYSILIGRFCRMGHLEHGFAAFGLILKTGWR 122

Query: 290 PDPIAFSVL------GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM------ 337
            D IA + L      GK  GE+ D      +LQ M  LG  P+ V Y  LL+ +      
Sbjct: 123 MDHIAINQLLKGLCHGKRVGEAMD-----VLLQRMPELGCMPDTVSYTILLKGLCNEKRA 177

Query: 338 -----------------------------------GKAGKPGLARSLFDEMVESGLTPDE 362
                                              G+  KP    +LF EM++ G+ PD 
Sbjct: 178 EEALELLHMMADDHGRRCPPNVVSYSIVINGFFTEGQVDKP---YNLFLEMIDRGIPPDV 234

Query: 363 KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED 422
            T T +I    KA+    A  ++++M +N +  +   YN L++    IG  +E  ++ E+
Sbjct: 235 VTYTTVIDGLCKAQLFDRAEGVFQQMIDNGFKPNNYTYNCLIHGYLSIGKWKEVVQMLEE 294

Query: 423 MKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKAR 482
           M      KPD Y+Y ++LN     G    A   F+ M   G+   V     LI       
Sbjct: 295 MSARGL-KPDCYTYGSLLNYLCKNGRCREARFFFDSMIRKGIKPKVSTYGILIHGYATKG 353

Query: 483 RIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQA--NPKLVAFL 540
            + ++     + ++ G+ PD  +     S  + C   +    +   ++Q   +P +V + 
Sbjct: 354 ALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYG 413

Query: 541 NLIE 544
            LI+
Sbjct: 414 ALID 417



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/276 (21%), Positives = 117/276 (42%), Gaps = 7/276 (2%)

Query: 114 TYSYNPRVRDLKLFARKLNDCDNTEEAF--LRAITEIPHQPTRENALLILNSLKFWQKSY 171
            +SY P +    L  R     D  E+ F  + +I   P + T    L    S      +Y
Sbjct: 514 AFSYTPLISGYCLTGRT----DEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAY 569

Query: 172 FFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITC 231
             F  +  + + P   + YN  +  L   ++F   ++L   M+++  + D  TY+ I+  
Sbjct: 570 CLFREMLRKGVTP-GVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNG 628

Query: 232 AKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291
             + N  DEA + F+ +   GL  + +T++ ++    K G+ E+ + L+    A+G  P+
Sbjct: 629 LCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPN 688

Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
            + + ++ +   E G  +    +   M+  G  PN  + N L+  +   G    A +   
Sbjct: 689 VVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLS 748

Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
           ++ E   + +  T + L+ I+    +   A  L E+
Sbjct: 749 KLDERNFSVEASTTSLLMSIFTSDEYQHHAKSLPEK 784


>gi|356517404|ref|XP_003527377.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Glycine max]
          Length = 696

 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 114/473 (24%), Positives = 197/473 (41%), Gaps = 50/473 (10%)

Query: 175 NWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKR 234
           +W++  NL     + Y++ + +L  GR  +L E     ++S    L  +TY+ +I    R
Sbjct: 143 SWLQKHNLCFSYELLYSILINAL--GRSEKLYEAF---LLSQRQVLTPLTYNALIGACAR 197

Query: 235 CNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEE------------------- 275
               ++A+    +M + G  PD V YS+I+    +S K++                    
Sbjct: 198 NGDVEKALNLMSKMRRDGYQPDFVNYSSIIQYLTRSNKIDSPILQKLYTEIETDKIEIDG 257

Query: 276 ------VLSLYERG------------VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQE 317
                 +L   + G             ++G  P P     +    G SG       + +E
Sbjct: 258 HLMNDIILGFSKAGDPTRAMRFLAMAQSNGLNPKPSTLVAVILALGNSGRTHEAEALFEE 317

Query: 318 MKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA-R 376
           ++  G +P    YN LL+   K G    A  +  EM ++G+ PDE+T + LI  Y  A R
Sbjct: 318 IRENGSEPRTRAYNALLKGYVKTGSLKDAEFVVSEMEKAGVKPDEQTYSLLIDAYAHAGR 377

Query: 377 WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY 436
           W    + L E    N  P  ++ Y+ +L    D G  +++ ++ +DMK S+  +PD + Y
Sbjct: 378 WESARIVLKEMEASNVEPNSYV-YSRILASYRDKGEWQKSFQVLKDMK-SNGVQPDRHFY 435

Query: 437 TAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496
             M++ +G    +D+A+  FE M   G+  + +    LI C  K+ R +    +FG    
Sbjct: 436 NVMIDTFGKYNCLDHAMATFERMLSEGIRPDTVTWNTLINCHCKSGRHNMAEELFGEMQQ 495

Query: 497 RGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAFLNLIE--DNSTGFEN 552
           RG  P       +++ +   +  E V   ++ +Q     P  + +  L++    S  F +
Sbjct: 496 RGYSPCITTYNIMINSMGEQQRWEQVSLFLSKMQSQGLLPNSITYTTLVDVYGKSGRFSD 555

Query: 553 IKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGL 605
             E    V+K T         N LI+    R L+E A     L T  GL P L
Sbjct: 556 AIECLE-VLKSTGFKPTSTMYNALINAYAQRGLSELAVNAFRLMTTEGLTPSL 607



 Score =  115 bits (289), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 77/268 (28%), Positives = 131/268 (48%), Gaps = 6/268 (2%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLAN--EMVSNEIELDNIT 224
           WQKS+     +KS  + P +  FYNV + +  FG+   L   +A    M+S  I  D +T
Sbjct: 413 WQKSFQVLKDMKSNGVQP-DRHFYNVMIDT--FGKYNCLDHAMATFERMLSEGIRPDTVT 469

Query: 225 YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
           ++T+I C  +    + A E F  M + G  P   TY+ +++   +  + E+V     +  
Sbjct: 470 WNTLINCHCKSGRHNMAEELFGEMQQRGYSPCITTYNIMINSMGEQQRWEQVSLFLSKMQ 529

Query: 285 ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344
           + G  P+ I ++ L  ++G+SG +      L+ +KS G +P   +YN L+ A  + G   
Sbjct: 530 SQGLLPNSITYTTLVDVYGKSGRFSDAIECLEVLKSTGFKPTSTMYNALINAYAQRGLSE 589

Query: 345 LARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
           LA + F  M   GLTP    L +LI  +G+ R   +A  + + M+EN    D + Y TL+
Sbjct: 590 LAVNAFRLMTTEGLTPSLLALNSLINAFGEDRRDAEAFAVLQYMKENNIEPDVVTYTTLM 649

Query: 405 NMCADIGLVEEAERLFEDMKLSDYCKPD 432
                +   ++   ++E+M  S  C PD
Sbjct: 650 KALIRVEKFQKVPAVYEEMVTSG-CTPD 676



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 70/302 (23%), Positives = 141/302 (46%), Gaps = 1/302 (0%)

Query: 212 EMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG 271
           EM ++ +E ++  YS I+   +    + ++ +  + M   G+ PD   Y+ ++D + K  
Sbjct: 387 EMEASNVEPNSYVYSRILASYRDKGEWQKSFQVLKDMKSNGVQPDRHFYNVMIDTFGKYN 446

Query: 272 KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYN 331
            ++  ++ +ER ++ G +PD + ++ L     +SG ++    +  EM+  G  P +  YN
Sbjct: 447 CLDHAMATFERMLSEGIRPDTVTWNTLINCHCKSGRHNMAEELFGEMQQRGYSPCITTYN 506

Query: 332 TLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN 391
            ++ +MG+  +         +M   GL P+  T T L+ +YGK+    DA+E  E ++  
Sbjct: 507 IMINSMGEQQRWEQVSLFLSKMQSQGLLPNSITYTTLVDVYGKSGRFSDAIECLEVLKST 566

Query: 392 KWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDN 451
            +     +YN L+N  A  GL E A   F  M  ++   P   +  +++N +G       
Sbjct: 567 GFKPTSTMYNALINAYAQRGLSELAVNAFRLMT-TEGLTPSLLALNSLINAFGEDRRDAE 625

Query: 452 AIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
           A  + + M E  +  +V+  T L++ L +  +   +  V+   +  G  PD +    L S
Sbjct: 626 AFAVLQYMKENNIEPDVVTYTTLMKALIRVEKFQKVPAVYEEMVTSGCTPDRKARAMLRS 685

Query: 512 VV 513
            +
Sbjct: 686 AL 687



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 140/307 (45%), Gaps = 5/307 (1%)

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           EA   FE + + G  P    Y+A+L  Y K+G +++   +      +G KPD   +S+L 
Sbjct: 310 EAEALFEEIRENGSEPRTRAYNALLKGYVKTGSLKDAEFVVSEMEKAGVKPDEQTYSLLI 369

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
             +  +G ++  R VL+EM++  V+PN  VY+ +L +    G+   +  +  +M  +G+ 
Sbjct: 370 DAYAHAGRWESARIVLKEMEASNVEPNSYVYSRILASYRDKGEWQKSFQVLKDMKSNGVQ 429

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
           PD      +I  +GK      A+  +ERM       D + +NTL+N     G    AE L
Sbjct: 430 PDRHFYNVMIDTFGKYNCLDHAMATFERMLSEGIRPDTVTWNTLINCHCKSGRHNMAEEL 489

Query: 420 FEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479
           F +M+   Y  P   +Y  M+N  G     +       +M   G+  N +  T L+   G
Sbjct: 490 FGEMQQRGYS-PCITTYNIMINSMGEQQRWEQVSLFLSKMQSQGLLPNSITYTTLVDVYG 548

Query: 480 KARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVS---LCETSEDVGKVITCLQQANPKL 536
           K+ R  D +    V    G KP   +   L++  +   L E + +  +++T  +   P L
Sbjct: 549 KSGRFSDAIECLEVLKSTGFKPTSTMYNALINAYAQRGLSELAVNAFRLMTT-EGLTPSL 607

Query: 537 VAFLNLI 543
           +A  +LI
Sbjct: 608 LALNSLI 614



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 89/374 (23%), Positives = 159/374 (42%), Gaps = 4/374 (1%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           F    +S  L P  +    V +     GR  +  E L  E+  N  E     Y+ ++   
Sbjct: 279 FLAMAQSNGLNPKPSTLVAVILALGNSGRTHE-AEALFEEIRENGSEPRTRAYNALLKGY 337

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +     +A      M K G+ PDE TYS ++D YA +G+ E    + +   AS  +P+ 
Sbjct: 338 VKTGSLKDAEFVVSEMEKAGVKPDEQTYSLLIDAYAHAGRWESARIVLKEMEASNVEPNS 397

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
             +S +   + + G++     VL++MKS GVQP+   YN +++  GK      A + F+ 
Sbjct: 398 YVYSRILASYRDKGEWQKSFQVLKDMKSNGVQPDRHFYNVMIDTFGKYNCLDHAMATFER 457

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M+  G+ PD  T   LI  + K+     A EL+  M++  +      YN ++N   +   
Sbjct: 458 MLSEGIRPDTVTWNTLINCHCKSGRHNMAEELFGEMQQRGYSPCITTYNIMINSMGEQQR 517

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
            E+       M+ S    P++ +YT ++++YG  G   +AIE  E +   G         
Sbjct: 518 WEQVSLFLSKMQ-SQGLLPNSITYTTLVDVYGKSGRFSDAIECLEVLKSTGFKPTSTMYN 576

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQA 532
            LI    +    +  V  F +    G+ P       L++         +   V+  +++ 
Sbjct: 577 ALINAYAQRGLSELAVNAFRLMTTEGLTPSLLALNSLINAFGEDRRDAEAFAVLQYMKEN 636

Query: 533 N--PKLVAFLNLIE 544
           N  P +V +  L++
Sbjct: 637 NIEPDVVTYTTLMK 650


>gi|218184541|gb|EEC66968.1| hypothetical protein OsI_33625 [Oryza sativa Indica Group]
          Length = 1351

 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 101/422 (23%), Positives = 198/422 (46%), Gaps = 10/422 (2%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           Y+V M +    R  + +  L  EM ++ ++ +  +Y+  I    +   FDEA      M 
Sbjct: 277 YSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQARRFDEAYRILAEME 336

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
             G  PD +T++ ++ V   +G++ +   ++ +   S  KPD + +  L   F ++G+  
Sbjct: 337 NEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFADNGESQ 396

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
            +  +   MK+ G   N+V Y  +++A+ + G+   A  +FDEM + G+ P++ +  +LI
Sbjct: 397 SVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLI 456

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
             + KA    DALEL++ M  +    +   +   +N     G   +A + +E MK S   
Sbjct: 457 SGFLKADRFGDALELFKYMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMK-SKGI 515

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
            PD  +  A+L      G +  A  +F E+  +GV+ + +  T +I+C  KA + D+ V+
Sbjct: 516 VPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVK 575

Query: 490 VFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAFLNLIEDNS 547
           +F   I+    PD  +   L+  +      ++  ++   L++ N  P    +  L+    
Sbjct: 576 IFYDMIENNCVPDVLVVNSLIDTLYKAGRGDEAWQIFYQLKEMNLEPTDGTYNTLLA--G 633

Query: 548 TGFENIKEEFRNVIKDTEVDARRP---FCNCLID-ICRNRNLNERAHELLYLGTLYGLYP 603
            G E   +E  +++++       P     N ++D +C+N  +N+ A ++LY  T  G  P
Sbjct: 634 LGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVND-ALDMLYSMTTKGCIP 692

Query: 604 GL 605
            L
Sbjct: 693 DL 694



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 148/319 (46%), Gaps = 34/319 (10%)

Query: 218 IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL 277
           I L+  TY+ ++    +     EA+E ++ M   G++P   TYS ++  + K   VE VL
Sbjct: 235 IVLNAYTYNGLVYFLVKSGFDREALEVYKVMMVDGVVPSVRTYSVLMVAFGKRRDVETVL 294

Query: 278 SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
            L     A G KP+  ++++  ++ G++  +D    +L EM++ G +P+++ +  L++ +
Sbjct: 295 WLLREMEAHGVKPNVYSYTICIRVLGQARRFDEAYRILAEMENEGCKPDVITHTVLIQVL 354

Query: 338 GKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDF 397
             AG+   A+ +F +M +S   PD  T   L+  +     ++  +E+W  M+ + +  + 
Sbjct: 355 CDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFADNGESQSVMEIWNAMKADGYNDNV 414

Query: 398 ILYNTLLNMCADIGLVEEAERLFEDMK--------------LSDYC-------------- 429
           + Y  +++    +G V EA  +F++MK              +S +               
Sbjct: 415 VAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKY 474

Query: 430 ------KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483
                 KP+ Y++   +N YG  G    AI+ +E M   G+  +V+    ++  L K+ R
Sbjct: 475 MDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGR 534

Query: 484 IDDLVRVFGVSIDRGVKPD 502
           +    RVF      GV PD
Sbjct: 535 LGMAKRVFHELKAMGVSPD 553



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 142/282 (50%), Gaps = 1/282 (0%)

Query: 190  YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
            YN+ + ++    + + + ++  EM     E   +TY+TII+   +    ++AI+ +  + 
Sbjct: 872  YNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLM 931

Query: 250  KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
              G  P   TY  +LD   K+G++E+  +L+   +  G K +   +++L      +G+ +
Sbjct: 932  SQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTE 991

Query: 310  GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
             + ++ Q+M   G+ P++  Y  +++ + KAG+     + F +++E GL PD  T   LI
Sbjct: 992  KVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLI 1051

Query: 370  KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
               GK++  ++A+ L+  M++     +   YN+L+      G   EA +++E++ L+   
Sbjct: 1052 DGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEEL-LTKGW 1110

Query: 430  KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC 471
            KP+ ++Y A++  Y   G+ D+A   +  M   G   N   C
Sbjct: 1111 KPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLPNSSTC 1152



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 139/322 (43%), Gaps = 1/322 (0%)

Query: 185  METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEW 244
            ++T  YN  +  L       + E L  EM       D  TY+ ++    +    +E ++ 
Sbjct: 832  LKTGSYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKV 891

Query: 245  FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
             E M++ G     VTY+ I+    KS ++E+ + LY   ++ G+ P P  +  L     +
Sbjct: 892  QEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLK 951

Query: 305  SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
            +G  +    +  EM   G + N  +YN LL     AG       LF +MV+ G+ PD K+
Sbjct: 952  AGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKS 1011

Query: 365  LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
             T +I    KA    D L  + ++ E     D I YN L++       +EEA  LF +M+
Sbjct: 1012 YTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQ 1071

Query: 425  LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484
                  P+ Y+Y +++   G  G    A +++EE+   G   NV     LI+    +   
Sbjct: 1072 KKGIV-PNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSGST 1130

Query: 485  DDLVRVFGVSIDRGVKPDDRLC 506
            D     +G  I  G  P+   C
Sbjct: 1131 DSAYAAYGRMIVGGCLPNSSTC 1152



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/256 (29%), Positives = 128/256 (50%), Gaps = 3/256 (1%)

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M + G++ +  TY+ ++    KSG   E L +Y+  +  G  P    +SVL   FG+  D
Sbjct: 230 MKEAGIVLNAYTYNGLVYFLVKSGFDREALEVYKVMMVDGVVPSVRTYSVLMVAFGKRRD 289

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
            + + ++L+EM++ GV+PN+  Y   +  +G+A +   A  +  EM   G  PD  T T 
Sbjct: 290 VETVLWLLREMEAHGVKPNVYSYTICIRVLGQARRFDEAYRILAEMENEGCKPDVITHTV 349

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           LI++   A    DA +++ +M+++    D + Y TLL+  AD G  +    ++  MK   
Sbjct: 350 LIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFADNGESQSVMEIWNAMKADG 409

Query: 428 YCKPDN-YSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
           Y   DN  +YTA+++     G V  A+E+F+EM + G+         LI    KA R  D
Sbjct: 410 Y--NDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGD 467

Query: 487 LVRVFGVSIDRGVKPD 502
            + +F      G KP+
Sbjct: 468 ALELFKYMDIHGPKPN 483



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 79/340 (23%), Positives = 159/340 (46%), Gaps = 9/340 (2%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           +  +KS+ + P + +  N  +  L    +  + +++ +E+ +  +  D ITY+ +I C  
Sbjct: 507 YELMKSKGIVP-DVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCS 565

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
           + + FDEA++ F  M +   +PD +  ++++D   K+G+ +E   ++ +      +P   
Sbjct: 566 KASKFDEAVKIFYDMIENNCVPDVLVVNSLIDTLYKAGRGDEAWQIFYQLKEMNLEPTDG 625

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
            ++ L    G  G    + ++L+EM      PNL+ YNT+L+ + K G    A  +   M
Sbjct: 626 TYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSM 685

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
              G  PD  +   +I    K     +A  ++ +M++   P D+    T+L     IGL+
Sbjct: 686 TTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMKKVLIP-DYATLCTILPSFVKIGLM 744

Query: 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTC 473
           +EA  + ++  L    K D  S  +++         + +IE  E ++  G+ ++      
Sbjct: 745 KEALHIIKEYFLQPGSKTDRSSCHSLMEGILKKAGTEKSIEFAEIIASSGITLDDFFLCP 804

Query: 474 LIQCLGKARR---IDDLV---RVFGVSIDRGVKPDDRLCG 507
           LI+ L K ++     +LV   + FGVS+  G   +  +CG
Sbjct: 805 LIKHLCKQKKALEAHELVKKFKSFGVSLKTG-SYNSLICG 843



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 146/335 (43%), Gaps = 37/335 (11%)

Query: 168  QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
            +KS  F   I S  +  ++  F    +K L   ++     +L  +  S  + L   +Y++
Sbjct: 781  EKSIEFAEIIASSGI-TLDDFFLCPLIKHLCKQKKALEAHELVKKFKSFGVSLKTGSYNS 839

Query: 228  IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
            +I      NL D A   F  M + G  PDE TY+ +LD   KS ++EE+L          
Sbjct: 840  LICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLK--------- 890

Query: 288  WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
                                      V +EM   G +   V YNT++  + K+ +   A 
Sbjct: 891  --------------------------VQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAI 924

Query: 348  SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
             L+  ++  G +P   T   L+    KA   +DA  L+  M E     +  +YN LLN  
Sbjct: 925  DLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGH 984

Query: 408  ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
               G  E+   LF+DM +     PD  SYT +++     G +++ +  F ++ E+G+  +
Sbjct: 985  RIAGNTEKVCHLFQDM-VDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPD 1043

Query: 468  VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            ++    LI  LGK++R+++ V +F     +G+ P+
Sbjct: 1044 LITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPN 1078



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 53/230 (23%), Positives = 99/230 (43%), Gaps = 11/230 (4%)

Query: 239 DEAIEWFERMYKTGLMPDEVTYSA----ILDV---YAKSGKVEEVLSLYERGVASGWKPD 291
           D   E  ER       P  V  +A    +LD+   + + G + EV  + +R +    K +
Sbjct: 147 DGPAEALERFRSAARRPRVVHTTASCNYMLDLMRDHGRVGDMAEVFDVMQRQIV---KAN 203

Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
              F+ +    G  G        L  MK  G+  N   YN L+  + K+G    A  ++ 
Sbjct: 204 VGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLVYFLVKSGFDREALEVYK 263

Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411
            M+  G+ P  +T + L+  +GK R  +  L L   M  +    +   Y   + +     
Sbjct: 264 VMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQAR 323

Query: 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461
             +EA R+  +M+ ++ CKPD  ++T ++ +    G + +A ++F +M +
Sbjct: 324 RFDEAYRILAEME-NEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKK 372


>gi|242044666|ref|XP_002460204.1| hypothetical protein SORBIDRAFT_02g024500 [Sorghum bicolor]
 gi|241923581|gb|EER96725.1| hypothetical protein SORBIDRAFT_02g024500 [Sorghum bicolor]
          Length = 637

 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 82/333 (24%), Positives = 166/333 (49%), Gaps = 8/333 (2%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIIT-- 230
            F+ +  + + P   + YN  + + R+       +++ ++MV+ +I+ + ITY+++I   
Sbjct: 165 LFDEMLRRGMVP-SVVTYNTLINACRYQGAVAKAQEMWDQMVARQIDPNVITYTSMICVL 223

Query: 231 CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
           C + C    +A   F+ M + G+ P++ TY+ ++  + +   V     LY+  + SG  P
Sbjct: 224 CEEGC--IGDAERLFDAMKEAGMRPNQYTYNVLMSGHCQGDDVNSAFVLYQELLNSGLIP 281

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
           + + F+ L   F ++  +   + + ++M   GV P + VYN+L++   ++G    A SL+
Sbjct: 282 NAVVFTTLIDGFCKAKRFSEAKDMFRDMPRFGVAPTVPVYNSLMDGAFRSGDAQEALSLY 341

Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
            EM   GL PDE T + +++        + A    E +RE+   ++   YN L++     
Sbjct: 342 QEMTRLGLCPDEFTCSIVVRGLCDGGQIQVAARFLEGVREDGVNLNAAAYNALIDEYCRN 401

Query: 411 GLVEEAERLFEDMKLSDY-CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVM 469
           G +EEA  L    ++++   +P+  SY+++++ +   G +  A+ ++ EM   G+  NV+
Sbjct: 402 GNLEEA--LATCTRMTEVGVEPNVVSYSSLIDGHSKLGKMQIAMAIYTEMVAKGIEPNVV 459

Query: 470 GCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
             T LI    K   ID   R     I+ G+ P+
Sbjct: 460 TYTALIHGHAKNGGIDAAFRFHKEMIENGISPN 492



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/313 (23%), Positives = 156/313 (49%), Gaps = 3/313 (0%)

Query: 191 NVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYK 250
           N  +  L   R+ +   +L +EM+   +    +TY+T+I   +      +A E +++M  
Sbjct: 147 NAVLDGLVKARRSRCAWELFDEMLRRGMVPSVVTYNTLINACRYQGAVAKAQEMWDQMVA 206

Query: 251 TGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDG 310
             + P+ +TY++++ V  + G + +   L++    +G +P+   ++VL     +  D + 
Sbjct: 207 RQIDPNVITYTSMICVLCEEGCIGDAERLFDAMKEAGMRPNQYTYNVLMSGHCQGDDVNS 266

Query: 311 IRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK 370
              + QE+ + G+ PN VV+ TL++   KA +   A+ +F +M   G+ P      +L+ 
Sbjct: 267 AFVLYQELLNSGLIPNAVVFTTLIDGFCKAKRFSEAKDMFRDMPRFGVAPTVPVYNSLMD 326

Query: 371 IYGKARWAKDALELWERM-RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
              ++  A++AL L++ M R    P +F     +  +C D G ++ A R  E ++  D  
Sbjct: 327 GAFRSGDAQEALSLYQEMTRLGLCPDEFTCSIVVRGLC-DGGQIQVAARFLEGVR-EDGV 384

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
             +  +Y A+++ Y   GN++ A+     M+E+GV  NV+  + LI    K  ++   + 
Sbjct: 385 NLNAAAYNALIDEYCRNGNLEEALATCTRMTEVGVEPNVVSYSSLIDGHSKLGKMQIAMA 444

Query: 490 VFGVSIDRGVKPD 502
           ++   + +G++P+
Sbjct: 445 IYTEMVAKGIEPN 457



 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 82/310 (26%), Positives = 136/310 (43%), Gaps = 25/310 (8%)

Query: 290 PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSL 349
           P P A  VL     + G  D   YV + + +L   P L   N +L+ + KA +   A  L
Sbjct: 110 PAP-ALGVLVIALSQMGLLDEALYVFRRLWTL---PALPACNAVLDGLVKARRSRCAWEL 165

Query: 350 FDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCAD 409
           FDEM+  G+ P   T   LI           A E+W++M   +   + I Y +++ +  +
Sbjct: 166 FDEMLRRGMVPSVVTYNTLINACRYQGAVAKAQEMWDQMVARQIDPNVITYTSMICVLCE 225

Query: 410 IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVM 469
            G + +AERLF+ MK +   +P+ Y+Y  +++ +  G +V++A  L++E+   G+  N +
Sbjct: 226 EGCIGDAERLFDAMKEAGM-RPNQYTYNVLMSGHCQGDDVNSAFVLYQELLNSGLIPNAV 284

Query: 470 GCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCL 529
             T LI    KA+R  +   +F      GV P   +   L+        S D  + ++  
Sbjct: 285 VFTTLIDGFCKAKRFSEAKDMFRDMPRFGVAPTVPVYNSLMDGAF---RSGDAQEALSLY 341

Query: 530 QQANPKLVAFLNLIEDNST-----------GFENIKEEFRNVIKDTEVDARRPFCNCLID 578
           Q+     +  L L  D  T           G   +   F   +++  V+      N LID
Sbjct: 342 QE-----MTRLGLCPDEFTCSIVVRGLCDGGQIQVAARFLEGVREDGVNLNAAAYNALID 396

Query: 579 -ICRNRNLNE 587
             CRN NL E
Sbjct: 397 EYCRNGNLEE 406



 Score = 82.4 bits (202), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 124/293 (42%), Gaps = 39/293 (13%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F+ +K   + P +   YNV M     G        L  E++++ +  + + ++T+I   
Sbjct: 235 LFDAMKEAGMRPNQYT-YNVLMSGHCQGDDVNSAFVLYQELLNSGLIPNAVVFTTLIDGF 293

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +   F EA + F  M + G+ P    Y++++D   +SG  +E LSLY+     G  PD 
Sbjct: 294 CKAKRFSEAKDMFRDMPRFGVAPTVPVYNSLMDGAFRSGDAQEALSLYQEMTRLGLCPDE 353

Query: 293 IAFSVLGKMFGESGDY-------DGIR----------------------------YVLQE 317
              S++ +   + G         +G+R                                 
Sbjct: 354 FTCSIVVRGLCDGGQIQVAARFLEGVREDGVNLNAAAYNALIDEYCRNGNLEEALATCTR 413

Query: 318 MKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARW 377
           M  +GV+PN+V Y++L++   K GK  +A +++ EMV  G+ P+  T TALI  + K   
Sbjct: 414 MTEVGVEPNVVSYSSLIDGHSKLGKMQIAMAIYTEMVAKGIEPNVVTYTALIHGHAKNGG 473

Query: 378 AKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED---MKLSD 427
              A    + M EN    + I  + L++       V++A R   +   +K SD
Sbjct: 474 IDAAFRFHKEMIENGISPNAITVSVLVDGLCRENRVQDAVRFVMEHSGIKYSD 526


>gi|222622462|gb|EEE56594.1| hypothetical protein OsJ_05954 [Oryza sativa Japonica Group]
          Length = 579

 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 95/366 (25%), Positives = 169/366 (46%), Gaps = 34/366 (9%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           +++  F  +K ++  P    +  +   S + GR  + +    +EMVS    L+ I ++TI
Sbjct: 181 QAFQVFEDMKQKHCVPDAYTYTILIRMSGKAGRTSKFL-SFFDEMVSKGCVLNLIAFNTI 239

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVE---EVL-------- 277
           I    +  + D+ I    +M +    P++ TYS  LD+ A  G++    EVL        
Sbjct: 240 IEALGKNKMVDKVIFVLSKMVENDCQPNQFTYSITLDILATEGQLHRLNEVLDICSRFMN 299

Query: 278 -SLYERGVASGWKPDPI--AFSVLGKMFG--ESGDYDGIRYVLQ---------------- 316
            S+Y   V S  K      A +V  +M+   E GD D    +L+                
Sbjct: 300 RSIYSYLVKSLCKSGHASEAHNVFCRMWNSHEKGDRDAFVSMLEVLCNAEKTLEAIDLLH 359

Query: 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
            M   G+  ++ +YN +  A+GK  +     +LFD+M  +G+ PD  T   +I  YG+  
Sbjct: 360 MMPEKGIVTDVGMYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVG 419

Query: 377 WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY 436
               A EL+E M  +    D + YN+L+N     G ++EA  LF++M+   Y  PD ++Y
Sbjct: 420 LVDKASELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGY-DPDVFTY 478

Query: 437 TAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496
           + ++  +G    V+ A  LF+EM   G   N++    L+ CL +  + ++  +++     
Sbjct: 479 SILIECFGKSNKVEMACSLFDEMISEGCTPNIVTYNILLDCLERRGKTEEAHKLYETMKQ 538

Query: 497 RGVKPD 502
           +G+ PD
Sbjct: 539 QGLIPD 544



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 98/405 (24%), Positives = 177/405 (43%), Gaps = 72/405 (17%)

Query: 194 MKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGL 253
           ++S    + FQ+ E    EM     +LD   Y+ ++    +  + D+A + FE M +   
Sbjct: 139 LRSREVSKGFQVYE----EMRRKGYKLDIFAYNMLLDALAKAGMVDQAFQVFEDMKQKHC 194

Query: 254 MPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRY 313
           +PD  TY+ ++ +  K+G+  + LS ++  V+ G   + IAF+ + +  G++   D + +
Sbjct: 195 VPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEALGKNKMVDKVIF 254

Query: 314 VLQEMKSLGVQPNLV--------------------------------VYNTLLEAMGKAG 341
           VL +M     QPN                                  +Y+ L++++ K+G
Sbjct: 255 VLSKMVENDCQPNQFTYSITLDILATEGQLHRLNEVLDICSRFMNRSIYSYLVKSLCKSG 314

Query: 342 KPGLARSLFDEMVESGLTPD--------------EKTLTAL--------------IKIY- 372
               A ++F  M  S    D              EKTL A+              + +Y 
Sbjct: 315 HASEAHNVFCRMWNSHEKGDRDAFVSMLEVLCNAEKTLEAIDLLHMMPEKGIVTDVGMYN 374

Query: 373 ------GKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
                 GK +       L+++M+ N    D   YN +++    +GLV++A  LFE M+ S
Sbjct: 375 MVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEAS 434

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
             CKPD  +Y +++N  G  G++D A  LF+EM E G   +V   + LI+C GK+ +++ 
Sbjct: 435 S-CKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEM 493

Query: 487 LVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ 531
              +F   I  G  P+      LL  +     +E+  K+   ++Q
Sbjct: 494 ACSLFDEMISEGCTPNIVTYNILLDCLERRGKTEEAHKLYETMKQ 538



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 100/187 (53%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN+   +L   +Q   I  L ++M +N I  D  TY+ +I+   R  L D+A E FE M 
Sbjct: 373 YNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVME 432

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
            +   PD VTY+++++   K G ++E   L++     G+ PD   +S+L + FG+S   +
Sbjct: 433 ASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVE 492

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               +  EM S G  PN+V YN LL+ + + GK   A  L++ M + GL PD  T + L 
Sbjct: 493 MACSLFDEMISEGCTPNIVTYNILLDCLERRGKTEEAHKLYETMKQQGLIPDSITYSILE 552

Query: 370 KIYGKAR 376
           ++  +++
Sbjct: 553 RLESRSQ 559



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 87/159 (54%)

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
           F++M   G++PD  TY+ ++  Y + G V++   L+E   AS  KPD + ++ L    G+
Sbjct: 393 FDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTYNSLINCLGK 452

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
            GD D    + +EM+  G  P++  Y+ L+E  GK+ K  +A SLFDEM+  G TP+  T
Sbjct: 453 HGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIVT 512

Query: 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
              L+    +    ++A +L+E M++     D I Y+ L
Sbjct: 513 YNILLDCLERRGKTEEAHKLYETMKQQGLIPDSITYSIL 551



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 101/200 (50%), Gaps = 1/200 (0%)

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           EAI+    M + G++ D   Y+ +     K  +V  + +L+++   +G  PD   ++++ 
Sbjct: 353 EAIDLLHMMPEKGIVTDVGMYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMI 412

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
             +G  G  D    + + M++   +P++V YN+L+  +GK G    A  LF EM E G  
Sbjct: 413 SSYGRVGLVDKASELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYD 472

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
           PD  T + LI+ +GK+   + A  L++ M       + + YN LL+     G  EEA +L
Sbjct: 473 PDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIVTYNILLDCLERRGKTEEAHKL 532

Query: 420 FEDMKLSDYCKPDNYSYTAM 439
           +E MK      PD+ +Y+ +
Sbjct: 533 YETMKQQGLI-PDSITYSIL 551



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 87/352 (24%), Positives = 142/352 (40%), Gaps = 68/352 (19%)

Query: 218 IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL 277
           + L   TY  I+    R     +  + +E M + G   D   Y+ +LD  AK+G V++  
Sbjct: 124 LRLSGYTYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQAF 183

Query: 278 SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
            ++E        PD   +++L +M G++G          EM S G   NL+ +NT++EA+
Sbjct: 184 QVFEDMKQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEAL 243

Query: 338 GKAGKPGLARSLFDEMVESGLTPDEKTLTA------------------------------ 367
           GK         +  +MVE+   P++ T +                               
Sbjct: 244 GKNKMVDKVIFVLSKMVENDCQPNQFTYSITLDILATEGQLHRLNEVLDICSRFMNRSIY 303

Query: 368 --LIKIYGKARWAKDALELWERM--------RENKWPMDFILYNT--------LLNMCAD 409
             L+K   K+  A +A  ++ RM        R+    M  +L N         LL+M  +
Sbjct: 304 SYLVKSLCKSGHASEAHNVFCRMWNSHEKGDRDAFVSMLEVLCNAEKTLEAIDLLHMMPE 363

Query: 410 IGLVEEA-------------------ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
            G+V +                      LF+ MK ++   PD ++Y  M++ YG  G VD
Sbjct: 364 KGIVTDVGMYNMVFSALGKLKQVSFISNLFDKMK-TNGIIPDVFTYNIMISSYGRVGLVD 422

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            A ELFE M       +V+    LI CLGK   +D+   +F    ++G  PD
Sbjct: 423 KASELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPD 474



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 52/116 (44%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + YN  +  L           L  EM     + D  TYS +I C  + N  + A   F
Sbjct: 439 DVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLF 498

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKM 301
           + M   G  P+ VTY+ +LD   + GK EE   LYE     G  PD I +S+L ++
Sbjct: 499 DEMISEGCTPNIVTYNILLDCLERRGKTEEAHKLYETMKQQGLIPDSITYSILERL 554



 Score = 45.1 bits (105), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 27/125 (21%), Positives = 64/125 (51%), Gaps = 4/125 (3%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           +++  F  ++ +   P +   Y++ ++      + ++   L +EM+S     + +TY+ +
Sbjct: 458 EAHMLFKEMQEKGYDP-DVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIVTYNIL 516

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
           + C +R    +EA + +E M + GL+PD +TYS +  + ++S   +  + + +    SGW
Sbjct: 517 LDCLERRGKTEEAHKLYETMKQQGLIPDSITYSILERLESRS---QRTVRIRKPTRISGW 573

Query: 289 KPDPI 293
              P+
Sbjct: 574 VVSPL 578


>gi|357130063|ref|XP_003566676.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 822

 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 94/378 (24%), Positives = 166/378 (43%), Gaps = 36/378 (9%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
            K+   F+ +  Q + P + + Y+  + +L   R     E +  +M+SN  E D +TY+ 
Sbjct: 244 SKACNLFHEMMQQGVVP-DVVTYSSYIDALCKARAMDKAELVLRQMISNGFEPDKVTYNC 302

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           +I        + E    F  M + GLMPD  T ++ +    K GK +E    ++   A G
Sbjct: 303 MIHGYSILGQWKETAGMFREMTRRGLMPDIFTCNSYMSSLCKHGKSKEAAEFFDSMAAKG 362

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
            KPD + +SVL   +   G    +  +   M+  G+  +  VYN L++A GK G    A 
Sbjct: 363 HKPDLVTYSVLLHGYAAEGYVVDMLNLFNSMEGNGIVADHSVYNILIDAYGKRGMMDEAM 422

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL-NM 406
            +F +M E G+ PD  T   +I  + +     DA++ + +M       D I+YN+L+   
Sbjct: 423 LIFTQMQERGVMPDAWTYGTVIAAFSRMGRLADAMDKFNQMIAMGLKPDTIVYNSLIQGF 482

Query: 407 CADIGLVEEAERLFEDMK--------------LSDYCK--------------------PD 432
           C    LV+  E + E M               ++  CK                    PD
Sbjct: 483 CMHGNLVKAKELISEMMSRGIPRPNTVFFNSIINSLCKEGRVVEAQDIFDLVIHIGERPD 542

Query: 433 NYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFG 492
             ++ ++++ YG  G ++ A  + + M  +G+  +V+  + L+    +  RIDD + +F 
Sbjct: 543 VITFNSLIDGYGLVGKMEKAFGVLDAMISVGIEPDVVTYSALLDGYCRNGRIDDGLILFR 602

Query: 493 VSIDRGVKPDDRLCGCLL 510
             + +GVKP     G +L
Sbjct: 603 EMLSKGVKPTTITYGIIL 620



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 142/293 (48%), Gaps = 3/293 (1%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMV--SNEIELDNITYSTIITCAKRCNLFDEAIE 243
           +TI Y+  +KSL    + Q    L + MV  S     + ++Y+T+I    R     +A  
Sbjct: 189 DTISYSTVLKSLCEDSRSQRALDLLHTMVKKSGGCSPNVVSYNTVIHGFFREGEVSKACN 248

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
            F  M + G++PD VTYS+ +D   K+  +++   +  + +++G++PD + ++ +   + 
Sbjct: 249 LFHEMMQQGVVPDVVTYSSYIDALCKARAMDKAELVLRQMISNGFEPDKVTYNCMIHGYS 308

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
             G +     + +EM   G+ P++   N+ + ++ K GK   A   FD M   G  PD  
Sbjct: 309 ILGQWKETAGMFREMTRRGLMPDIFTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPDLV 368

Query: 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
           T + L+  Y    +  D L L+  M  N    D  +YN L++     G+++EA  +F  M
Sbjct: 369 TYSVLLHGYAAEGYVVDMLNLFNSMEGNGIVADHSVYNILIDAYGKRGMMDEAMLIFTQM 428

Query: 424 KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
           +      PD ++Y  ++  +   G + +A++ F +M  +G+  + +    LIQ
Sbjct: 429 Q-ERGVMPDAWTYGTVIAAFSRMGRLADAMDKFNQMIAMGLKPDTIVYNSLIQ 480



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 144/320 (45%), Gaps = 4/320 (1%)

Query: 186 ETIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEW 244
           + I  N+ +K L    R    +  L + M    +E D I+YST++      +    A++ 
Sbjct: 153 DVIVANILLKCLCHAKRSDDAVNVLLHRMPELGVEPDTISYSTVLKSLCEDSRSQRALDL 212

Query: 245 FERMYKT--GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
              M K   G  P+ V+Y+ ++  + + G+V +  +L+   +  G  PD + +S      
Sbjct: 213 LHTMVKKSGGCSPNVVSYNTVIHGFFREGEVSKACNLFHEMMQQGVVPDVVTYSSYIDAL 272

Query: 303 GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
            ++   D    VL++M S G +P+ V YN ++      G+      +F EM   GL PD 
Sbjct: 273 CKARAMDKAELVLRQMISNGFEPDKVTYNCMIHGYSILGQWKETAGMFREMTRRGLMPDI 332

Query: 363 KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED 422
            T  + +    K   +K+A E ++ M       D + Y+ LL+  A  G V +   LF  
Sbjct: 333 FTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPDLVTYSVLLHGYAAEGYVVDMLNLFNS 392

Query: 423 MKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKAR 482
           M+  +    D+  Y  +++ YG  G +D A+ +F +M E GV  +      +I    +  
Sbjct: 393 ME-GNGIVADHSVYNILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAAFSRMG 451

Query: 483 RIDDLVRVFGVSIDRGVKPD 502
           R+ D +  F   I  G+KPD
Sbjct: 452 RLADAMDKFNQMIAMGLKPD 471



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 141/293 (48%), Gaps = 3/293 (1%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDN-ITYSTIITCA 232
           FN + +  L P +TI YN  ++           ++L +EM+S  I   N + +++II   
Sbjct: 460 FNQMIAMGLKP-DTIVYNSLIQGFCMHGNLVKAKELISEMMSRGIPRPNTVFFNSIINSL 518

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +     EA + F+ +   G  PD +T+++++D Y   GK+E+   + +  ++ G +PD 
Sbjct: 519 CKEGRVVEAQDIFDLVIHIGERPDVITFNSLIDGYGLVGKMEKAFGVLDAMISVGIEPDV 578

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           + +S L   +  +G  D    + +EM S GV+P  + Y  +L  +   G+   A+ +  E
Sbjct: 579 VTYSALLDGYCRNGRIDDGLILFREMLSKGVKPTTITYGIILHGLFNDGRTVGAKKMCHE 638

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M+ESG T D  T   ++    +     +A+ L++++       +  + NT+++    +  
Sbjct: 639 MIESGTTMDISTCGIILGGLCRNNCDDEAIALFKKLGAMNVKFNIAIINTMIDAMYKVRK 698

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
            EEA  LF+ +  +    P+  +Y  M+      G+V+ A  +F  M + G A
Sbjct: 699 REEANELFDSISATGLV-PNASTYGVMITNLLKEGSVEEADNMFSLMEKSGCA 750



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 142/328 (43%), Gaps = 37/328 (11%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS-LYER 282
           TY+ ++ C  R +        F R  KTGL  D +  + +L     + + ++ ++ L  R
Sbjct: 121 TYNILMDCCCRAHRPTVGFALFGRFLKTGLKTDVIVANILLKCLCHAKRSDDAVNVLLHR 180

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEM--KSLGVQPNLVVYNTLLEAMGKA 340
               G +PD I++S + K   E         +L  M  KS G  PN+V YNT++    + 
Sbjct: 181 MPELGVEPDTISYSTVLKSLCEDSRSQRALDLLHTMVKKSGGCSPNVVSYNTVIHGFFRE 240

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G+   A +LF EM++ G+ PD  T ++ I    KAR    A  +  +M  N +  D + Y
Sbjct: 241 GEVSKACNLFHEMMQQGVVPDVVTYSSYIDALCKARAMDKAELVLRQMISNGFEPDKVTY 300

Query: 401 NTLLNMCADIGLVEEAERLFEDMK--------------LSDYC----------------- 429
           N +++  + +G  +E   +F +M               +S  C                 
Sbjct: 301 NCMIHGYSILGQWKETAGMFREMTRRGLMPDIFTCNSYMSSLCKHGKSKEAAEFFDSMAA 360

Query: 430 ---KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
              KPD  +Y+ +L+ Y + G V + + LF  M   G+  +      LI   GK   +D+
Sbjct: 361 KGHKPDLVTYSVLLHGYAAEGYVVDMLNLFNSMEGNGIVADHSVYNILIDAYGKRGMMDE 420

Query: 487 LVRVFGVSIDRGVKPDDRLCGCLLSVVS 514
            + +F    +RGV PD    G +++  S
Sbjct: 421 AMLIFTQMQERGVMPDAWTYGTVIAAFS 448



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 91/193 (47%), Gaps = 2/193 (1%)

Query: 325 PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALE- 383
           P +  YN L++   +A +P +  +LF   +++GL  D      L+K    A+ + DA+  
Sbjct: 117 PTVCTYNILMDCCCRAHRPTVGFALFGRFLKTGLKTDVIVANILLKCLCHAKRSDDAVNV 176

Query: 384 LWERMRENKWPMDFILYNTLL-NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNI 442
           L  RM E     D I Y+T+L ++C D       + L   +K S  C P+  SY  +++ 
Sbjct: 177 LLHRMPELGVEPDTISYSTVLKSLCEDSRSQRALDLLHTMVKKSGGCSPNVVSYNTVIHG 236

Query: 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           +   G V  A  LF EM + GV  +V+  +  I  L KAR +D    V    I  G +PD
Sbjct: 237 FFREGEVSKACNLFHEMMQQGVVPDVVTYSSYIDALCKARAMDKAELVLRQMISNGFEPD 296

Query: 503 DRLCGCLLSVVSL 515
                C++   S+
Sbjct: 297 KVTYNCMIHGYSI 309



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 62/266 (23%), Positives = 117/266 (43%), Gaps = 37/266 (13%)

Query: 187 TIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           T+F+N  + SL + GR  +  + + + ++      D IT++++I         ++A    
Sbjct: 508 TVFFNSIINSLCKEGRVVE-AQDIFDLVIHIGERPDVITFNSLIDGYGLVGKMEKAFGVL 566

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           + M   G+ PD VTYSA+LD Y ++G++++ L L+   ++ G KP  I + ++       
Sbjct: 567 DAMISVGIEPDVVTYSALLDGYCRNGRIDDGLILFREMLSKGVKPTTITYGIILHGLFND 626

Query: 306 GDYDGIRYVLQEM--------------------------------KSLG---VQPNLVVY 330
           G   G + +  EM                                K LG   V+ N+ + 
Sbjct: 627 GRTVGAKKMCHEMIESGTTMDISTCGIILGGLCRNNCDDEAIALFKKLGAMNVKFNIAII 686

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
           NT+++AM K  K   A  LFD +  +GL P+  T   +I    K    ++A  ++  M +
Sbjct: 687 NTMIDAMYKVRKREEANELFDSISATGLVPNASTYGVMITNLLKEGSVEEADNMFSLMEK 746

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEA 416
           +       L N ++ +  + G + +A
Sbjct: 747 SGCAPSSRLLNNIIRVLLEKGEISKA 772



 Score = 40.8 bits (94), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 37/203 (18%), Positives = 88/203 (43%), Gaps = 1/203 (0%)

Query: 172 FFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITC 231
             F  + S+ + P  TI Y + +  L    +    +++ +EM+ +   +D  T   I+  
Sbjct: 599 ILFREMLSKGVKP-TTITYGIILHGLFNDGRTVGAKKMCHEMIESGTTMDISTCGIILGG 657

Query: 232 AKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291
             R N  DEAI  F+++    +  +    + ++D   K  K EE   L++   A+G  P+
Sbjct: 658 LCRNNCDDEAIALFKKLGAMNVKFNIAIINTMIDAMYKVRKREEANELFDSISATGLVPN 717

Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
              + V+     + G  +    +   M+  G  P+  + N ++  + + G+   A +   
Sbjct: 718 ASTYGVMITNLLKEGSVEEADNMFSLMEKSGCAPSSRLLNNIIRVLLEKGEISKAGNYLS 777

Query: 352 EMVESGLTPDEKTLTALIKIYGK 374
           ++    ++ +  T + ++ ++ +
Sbjct: 778 KVDGKTISLEASTASLMLSLFSR 800


>gi|357122970|ref|XP_003563186.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Brachypodium distachyon]
          Length = 675

 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 76/251 (30%), Positives = 120/251 (47%), Gaps = 1/251 (0%)

Query: 214 VSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKV 273
           ++ EI+     Y+ ++    +      A +  + M   G+ PDE TYS ++D Y ++G+ 
Sbjct: 298 LAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSDCGVAPDEATYSLLVDAYTRAGRW 357

Query: 274 EEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTL 333
           E    L +   A G KP    FS +   F + GD+     VL+EM + GVQP+   YN +
Sbjct: 358 ESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMHASGVQPDRHFYNVM 417

Query: 334 LEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKW 393
           ++  GK    G A   F+ M E G+ PD  T   LI  + K      A+EL+E MRE+  
Sbjct: 418 IDTFGKYNCLGHAMDAFNRMREEGIEPDVVTWNTLIDAHRKGGRHDRAMELFEEMRESNC 477

Query: 394 PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAI 453
           P     YN ++N+  +       E +  +MK      P+  +YT ++++YG  G    AI
Sbjct: 478 PPGTTTYNIMINLLGEQERWVGVETMLSEMKEQGLV-PNIITYTTLVDVYGRSGRFKEAI 536

Query: 454 ELFEEMSELGV 464
           E  E M   G+
Sbjct: 537 ECIEVMKADGL 547



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 141/299 (47%), Gaps = 2/299 (0%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           W+ +      +++  + P   +F  + +   R    +Q    +  EM ++ ++ D   Y+
Sbjct: 357 WESARILLKEMEADGVKPSSYVFSRI-LAGFRDRGDWQKAFAVLREMHASGVQPDRHFYN 415

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
            +I    + N    A++ F RM + G+ PD VT++ ++D + K G+ +  + L+E    S
Sbjct: 416 VMIDTFGKYNCLGHAMDAFNRMREEGIEPDVVTWNTLIDAHRKGGRHDRAMELFEEMRES 475

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
              P    ++++  + GE   + G+  +L EMK  G+ PN++ Y TL++  G++G+   A
Sbjct: 476 NCPPGTTTYNIMINLLGEQERWVGVETMLSEMKEQGLVPNIITYTTLVDVYGRSGRFKEA 535

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
               + M   GL P      AL+  Y +   A  AL + + MR +      ++ N+L+N 
Sbjct: 536 IECIEVMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNSLMNA 595

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
             +   V EA  + + MK +D  +PD  +YT ++         D    ++EEM   G A
Sbjct: 596 FGEDRRVVEAFSVLQFMKEND-LRPDVITYTTLMKALIRIEQFDKVPVIYEEMITSGCA 653



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 148/332 (44%), Gaps = 4/332 (1%)

Query: 172 FFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITC 231
            F  +  +  + P  T  YN  +K        +  EQ+ +EM    +  D  TYS ++  
Sbjct: 292 LFLEFFLAGEIKP-RTRAYNALLKGYVKIGSLKNAEQVLDEMSDCGVAPDEATYSLLVDA 350

Query: 232 AKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291
             R   ++ A    + M   G+ P    +S IL  +   G  ++  ++     ASG +PD
Sbjct: 351 YTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMHASGVQPD 410

Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
              ++V+   FG+             M+  G++P++V +NTL++A  K G+   A  LF+
Sbjct: 411 RHFYNVMIDTFGKYNCLGHAMDAFNRMREEGIEPDVVTWNTLIDAHRKGGRHDRAMELFE 470

Query: 352 EMVESGLTPDEKTLTALIKIYG-KARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
           EM ES   P   T   +I + G + RW      L E M+E     + I Y TL+++    
Sbjct: 471 EMRESNCPPGTTTYNIMINLLGEQERWVGVETMLSE-MKEQGLVPNIITYTTLVDVYGRS 529

Query: 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG 470
           G  +EA    E MK +D  KP    Y A++N Y   G  D+A+ + + M   G+  + + 
Sbjct: 530 GRFKEAIECIEVMK-ADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVV 588

Query: 471 CTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
              L+   G+ RR+ +   V     +  ++PD
Sbjct: 589 LNSLMNAFGEDRRVVEAFSVLQFMKENDLRPD 620



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 87/362 (24%), Positives = 153/362 (42%), Gaps = 37/362 (10%)

Query: 205 LIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAIL 264
           ++E+L  ++  + +E D   +S +I+   R  L D A++        GL P     +A++
Sbjct: 218 ILERLLGDLRESRLEPDAPLFSDLISAFARAALPDAALDLLASAQAIGLTPRSNAVTALI 277

Query: 265 DVYAKSGKVEEVLSLY-ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGV 323
                +G+V E  +L+ E  +A   KP   A++ L K + + G       VL EM   GV
Sbjct: 278 SALGGAGRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSDCGV 337

Query: 324 QPNLVVYNTLLEAMGKAGKPGLARSLFDEM------------------------------ 353
            P+   Y+ L++A  +AG+   AR L  EM                              
Sbjct: 338 APDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFA 397

Query: 354 -----VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCA 408
                  SG+ PD      +I  +GK      A++ + RMRE     D + +NTL++   
Sbjct: 398 VLREMHASGVQPDRHFYNVMIDTFGKYNCLGHAMDAFNRMREEGIEPDVVTWNTLIDAHR 457

Query: 409 DIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINV 468
             G  + A  LFE+M+ S+ C P   +Y  M+N+ G          +  EM E G+  N+
Sbjct: 458 KGGRHDRAMELFEEMRESN-CPPGTTTYNIMINLLGEQERWVGVETMLSEMKEQGLVPNI 516

Query: 469 MGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITC 528
           +  T L+   G++ R  + +    V    G+KP   +   L++  +    ++    V+  
Sbjct: 517 ITYTTLVDVYGRSGRFKEAIECIEVMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKA 576

Query: 529 LQ 530
           ++
Sbjct: 577 MR 578



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 94/196 (47%), Gaps = 1/196 (0%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F  ++  N  P  T  YN+ +  L    ++  +E + +EM    +  + ITY+T++   
Sbjct: 468 LFEEMRESNC-PPGTTTYNIMINLLGEQERWVGVETMLSEMKEQGLVPNIITYTTLVDVY 526

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            R   F EAIE  E M   GL P    Y A+++ YA+ G  +  L++ +   A G +   
Sbjct: 527 GRSGRFKEAIECIEVMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLEAST 586

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           +  + L   FGE         VLQ MK   ++P+++ Y TL++A+ +  +      +++E
Sbjct: 587 VVLNSLMNAFGEDRRVVEAFSVLQFMKENDLRPDVITYTTLMKALIRIEQFDKVPVIYEE 646

Query: 353 MVESGLTPDEKTLTAL 368
           M+ SG  PD K    L
Sbjct: 647 MITSGCAPDRKARAML 662



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 113/256 (44%), Gaps = 7/256 (2%)

Query: 252 GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVA----SGWKPDPIAFSVLGKMFGESGD 307
           G +PD  +YS +L     +    +  ++ ER +     S  +PD   FS L   F  +  
Sbjct: 192 GFLPDLASYSHLLASLLNTRDPPDA-AILERLLGDLRESRLEPDAPLFSDLISAFARAAL 250

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG-LTPDEKTLT 366
            D    +L   +++G+ P       L+ A+G AG+   A +LF E   +G + P  +   
Sbjct: 251 PDAALDLLASAQAIGLTPRSNAVTALISALGGAGRVAEAEALFLEFFLAGEIKPRTRAYN 310

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
           AL+K Y K    K+A ++ + M +     D   Y+ L++     G  E A  L ++M+ +
Sbjct: 311 ALLKGYVKIGSLKNAEQVLDEMSDCGVAPDEATYSLLVDAYTRAGRWESARILLKEME-A 369

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
           D  KP +Y ++ +L  +   G+   A  +  EM   GV  +      +I   GK   +  
Sbjct: 370 DGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMHASGVQPDRHFYNVMIDTFGKYNCLGH 429

Query: 487 LVRVFGVSIDRGVKPD 502
            +  F    + G++PD
Sbjct: 430 AMDAFNRMREEGIEPD 445



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 119/289 (41%), Gaps = 12/289 (4%)

Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKP---GLARSLFDEMVESGLTPDEKTLTALIK 370
           +L  ++  G  P+L  Y+ LL ++     P    +   L  ++ ES L PD    + LI 
Sbjct: 184 LLALIREHGFLPDLASYSHLLASLLNTRDPPDAAILERLLGDLRESRLEPDAPLFSDLIS 243

Query: 371 IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCK 430
            + +A     AL+L    +             L++     G V EAE LF +  L+   K
Sbjct: 244 AFARAALPDAALDLLASAQAIGLTPRSNAVTALISALGGAGRVAEAEALFLEFFLAGEIK 303

Query: 431 PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRV 490
           P   +Y A+L  Y   G++ NA ++ +EMS+ GVA +    + L+    +A R +    +
Sbjct: 304 PRTRAYNALLKGYVKIGSLKNAEQVLDEMSDCGVAPDEATYSLLVDAYTRAGRWESARIL 363

Query: 491 FGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVA----FLNLIEDN 546
                  GVKP   +   +L+         D  K    L++ +   V     F N++ D 
Sbjct: 364 LKEMEADGVKPSSYVFSRILAGF---RDRGDWQKAFAVLREMHASGVQPDRHFYNVMIDT 420

Query: 547 STGFENIKEEFR--NVIKDTEVDARRPFCNCLIDICRNRNLNERAHELL 593
              +  +       N +++  ++      N LID  R    ++RA EL 
Sbjct: 421 FGKYNCLGHAMDAFNRMREEGIEPDVVTWNTLIDAHRKGGRHDRAMELF 469


>gi|222630089|gb|EEE62221.1| hypothetical protein OsJ_17008 [Oryza sativa Japonica Group]
          Length = 584

 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 147/313 (46%), Gaps = 1/313 (0%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN  + +L    +   +  + NEMV   ++ + +TY+TI+    +      A     RM 
Sbjct: 172 YNAVVHALCGEFRMWEVFSVVNEMVQRGLQPNVVTYTTIVDAFCKARELRMACAILARMV 231

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
             G  P+ +T++A++  + + GKV + LS++   V  GW P  I+++VL +     GD  
Sbjct: 232 SMGCTPNVLTFTALVKGFFEDGKVHDALSMWHWMVDEGWAPSTISYNVLIRGLCCIGDLK 291

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
           G       MK   + PN   Y+TL++    AG    A  +++EM  SG  P+    T +I
Sbjct: 292 GALDFFNSMKRNALLPNATTYSTLVDGFSNAGDLDGAMLIWNEMKSSGCKPNVVVYTNMI 351

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
            +  K      A  L ++M  +  P + + +NTL+    D G V  A  +F  M+  + C
Sbjct: 352 DVLCKKMMFDQAESLIDKMLMDNCPPNTVTFNTLIGRLCDCGRVGRALNVFHGMR-RNGC 410

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
            P++ +Y  +L+     GN  +A  +  EM   G  ++++    +I CL +       + 
Sbjct: 411 HPNDRTYNELLHGLFREGNHKDAFAMVIEMLNNGFELSLVTYNTVINCLCQMCMRKHAML 470

Query: 490 VFGVSIDRGVKPD 502
           + G  + +G++PD
Sbjct: 471 LLGRMMVQGIQPD 483



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 78/263 (29%), Positives = 133/263 (50%), Gaps = 8/263 (3%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           TY+ +I    + +  D A +  + M + G  PDEV++  I+    K G+VEE      RG
Sbjct: 106 TYNLLIRALCQNDRVDAARKMLDEMSRKGCHPDEVSHGTIVSGMCKLGRVEEA-----RG 160

Query: 284 VASGWKPDPIAF-SVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
             +   P   ++ +V+  + GE   ++ +  V+ EM   G+QPN+V Y T+++A  KA +
Sbjct: 161 FLAETVPVQASYNAVVHALCGEFRMWE-VFSVVNEMVQRGLQPNVVTYTTIVDAFCKARE 219

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
             +A ++   MV  G TP+  T TAL+K + +     DAL +W  M +  W    I YN 
Sbjct: 220 LRMACAILARMVSMGCTPNVLTFTALVKGFFEDGKVHDALSMWHWMVDEGWAPSTISYNV 279

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
           L+     IG ++ A   F  MK  +   P+  +Y+ +++ + + G++D A+ ++ EM   
Sbjct: 280 LIRGLCCIGDLKGALDFFNSMK-RNALLPNATTYSTLVDGFSNAGDLDGAMLIWNEMKSS 338

Query: 463 GVAINVMGCTCLIQCLGKARRID 485
           G   NV+  T +I  L K    D
Sbjct: 339 GCKPNVVVYTNMIDVLCKKMMFD 361



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 96/416 (23%), Positives = 177/416 (42%), Gaps = 42/416 (10%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN+ +++L    +     ++ +EM       D +++ TI++   +    +EA     R +
Sbjct: 107 YNLLIRALCQNDRVDAARKMLDEMSRKGCHPDEVSHGTIVSGMCKLGRVEEA-----RGF 161

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
               +P + +Y+A++       ++ EV S+    V  G +P+ + ++ +   F ++ +  
Sbjct: 162 LAETVPVQASYNAVVHALCGEFRMWEVFSVVNEMVQRGLQPNVVTYTTIVDAFCKARELR 221

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               +L  M S+G  PN++ +  L++   + GK   A S++  MV+ G  P   +   LI
Sbjct: 222 MACAILARMVSMGCTPNVLTFTALVKGFFEDGKVHDALSMWHWMVDEGWAPSTISYNVLI 281

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
           +        K AL+ +  M+ N    +   Y+TL++  ++ G ++ A  ++ +MK S  C
Sbjct: 282 RGLCCIGDLKGALDFFNSMKRNALLPNATTYSTLVDGFSNAGDLDGAMLIWNEMK-SSGC 340

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
           KP+   YT M+++       D A  L ++M       N +    LI  L    R+   + 
Sbjct: 341 KPNVVVYTNMIDVLCKKMMFDQAESLIDKMLMDNCPPNTVTFNTLIGRLCDCGRVGRALN 400

Query: 490 VFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTG 549
           VF      G  P+DR    LL  +                ++ N K  AF  +IE  + G
Sbjct: 401 VFHGMRRNGCHPNDRTYNELLHGL---------------FREGNHK-DAFAMVIEMLNNG 444

Query: 550 FENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLY--GLYP 603
           FE     +  VI            NCL  +C       R H +L LG +   G+ P
Sbjct: 445 FELSLVTYNTVI------------NCLCQMCM------RKHAMLLLGRMMVQGIQP 482



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/290 (22%), Positives = 121/290 (41%), Gaps = 4/290 (1%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           FFN +K   L P  T  Y+  +              + NEM S+  + + + Y+ +I   
Sbjct: 296 FFNSMKRNALLPNATT-YSTLVDGFSNAGDLDGAMLIWNEMKSSGCKPNVVVYTNMIDVL 354

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +  +FD+A    ++M      P+ VT++ ++      G+V   L+++     +G  P+ 
Sbjct: 355 CKKMMFDQAESLIDKMLMDNCPPNTVTFNTLIGRLCDCGRVGRALNVFHGMRRNGCHPND 414

Query: 293 IAFS-VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
             ++ +L  +F E    D    V+ EM + G + +LV YNT++  + +      A  L  
Sbjct: 415 RTYNELLHGLFREGNHKDAFAMVI-EMLNNGFELSLVTYNTVINCLCQMCMRKHAMLLLG 473

Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411
            M+  G+ PD  T  A+I  Y K      A  L  +M     P + + Y  L++   + G
Sbjct: 474 RMMVQGIQPDAFTFNAIIHAYCKEGKVSIAACLLGQMNAVNCPRNVVAYTILISELCNQG 533

Query: 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461
            +  A      M     C P+  ++  ++    +       I LF+ + E
Sbjct: 534 KLSNAMVYLLKMLYEGIC-PNEATWNVLVRAIFTNIGTIGPIHLFKYIVE 582



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/234 (21%), Positives = 90/234 (38%), Gaps = 42/234 (17%)

Query: 305 SGDYDGIRYVLQEMKSLGV------------------------------------QPNLV 328
           +GD DG++Y LQEM+  GV                                     P + 
Sbjct: 11  AGDVDGVQYALQEMRLRGVACTEDALVAAIGAFARAGSADRALKTFYRASDLGCRDPGVR 70

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
           VYN LL+A+ +    G    ++D M ++G+ P+  T   LI+   +      A ++ + M
Sbjct: 71  VYNHLLDALLRENMVGAVVPVYDNMRKAGVDPNVYTYNLLIRALCQNDRVDAARKMLDEM 130

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
                  D + + T+++    +G VEEA     +        P   SY A+++       
Sbjct: 131 SRKGCHPDEVSHGTIVSGMCKLGRVEEARGFLAET------VPVQASYNAVVHALCGEFR 184

Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           +     +  EM + G+  NV+  T ++    KAR +     +    +  G  P+
Sbjct: 185 MWEVFSVVNEMVQRGLQPNVVTYTTIVDAFCKARELRMACAILARMVSMGCTPN 238



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 53/262 (20%), Positives = 109/262 (41%), Gaps = 15/262 (5%)

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWK-PDPIAFSVLGKMFG 303
            + M   G+   E    A +  +A++G  +  L  + R    G + P    ++ L     
Sbjct: 21  LQEMRLRGVACTEDALVAAIGAFARAGSADRALKTFYRASDLGCRDPGVRVYNHLLDALL 80

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE- 362
                  +  V   M+  GV PN+  YN L+ A+ +  +   AR + DEM   G  PDE 
Sbjct: 81  RENMVGAVVPVYDNMRKAGVDPNVYTYNLLIRALCQNDRVDAARKMLDEMSRKGCHPDEV 140

Query: 363 --KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN-MCADIGLVEEAERL 419
              T+ + +   G+   A+  L     ++ +        YN +++ +C +  + E    +
Sbjct: 141 SHGTIVSGMCKLGRVEEARGFLAETVPVQAS--------YNAVVHALCGEFRMWEVFSVV 192

Query: 420 FEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479
            E ++     +P+  +YT +++ +     +  A  +   M  +G   NV+  T L++   
Sbjct: 193 NEMVQRG--LQPNVVTYTTIVDAFCKARELRMACAILARMVSMGCTPNVLTFTALVKGFF 250

Query: 480 KARRIDDLVRVFGVSIDRGVKP 501
           +  ++ D + ++   +D G  P
Sbjct: 251 EDGKVHDALSMWHWMVDEGWAP 272


>gi|302792250|ref|XP_002977891.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
 gi|300154594|gb|EFJ21229.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
          Length = 385

 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 142/306 (46%), Gaps = 6/306 (1%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           + YN  +  L    +      L  EMV +    D  TY+T+IT   +    D+A+  FE+
Sbjct: 55  VTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQ 114

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG-WKPDPIAFSVLGKMFGESG 306
           +   G  PD VTYS ++D   K G+++E + L+ R + SG   P+ + ++ L   F   G
Sbjct: 115 LVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMG 174

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
             D    +L+ M   G  P++V Y TL+    K  +   A  L ++M   GLTP+  T T
Sbjct: 175 KMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPNVVTFT 234

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAER-LFEDMKL 425
           +L+    +     DA+ +   MR          YNT+L+    +  +EEA + + E+M  
Sbjct: 235 SLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRVNQLEEARKFMLEEMD- 293

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
              C P+  S+  M+           A+EL EE        +V+  T +I  L + +++D
Sbjct: 294 ---CPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDVLCREKKVD 350

Query: 486 DLVRVF 491
           +  RV+
Sbjct: 351 EACRVY 356



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 127/268 (47%), Gaps = 8/268 (2%)

Query: 195 KSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTG-L 253
           KS +     ++ EQL    V+     D +TYS +I    +     EAI+ F RM K+G  
Sbjct: 101 KSKKSDDALRVFEQL----VARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSC 156

Query: 254 MPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRY 313
           MP+ VTY++++  + + GK++E ++L ER   +G  PD + ++ L   F +    D    
Sbjct: 157 MPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYD 216

Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYG 373
           +L +M   G+ PN+V + +L++ + +  +   A  +  EM     +P   T   ++  Y 
Sbjct: 217 LLNQMTRKGLTPNVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYC 276

Query: 374 KARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDN 433
           +    ++A +    + E   P + + +N ++     +    EA  L E+ +    C PD 
Sbjct: 277 RVNQLEEARKFM--LEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEAR-RRRCNPDV 333

Query: 434 YSYTAMLNIYGSGGNVDNAIELFEEMSE 461
             YT ++++      VD A  ++ +M E
Sbjct: 334 VMYTTVIDVLCREKKVDEACRVYRKMLE 361



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 94/178 (52%)

Query: 325 PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384
           P  V YN+L+  + KA +   A  L +EMV SG  PD  T T LI  + K++ + DAL +
Sbjct: 52  PTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRV 111

Query: 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYG 444
           +E++    +  D + Y+ L++     G ++EA  LF  M  S  C P+  +Y ++++ + 
Sbjct: 112 FEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFC 171

Query: 445 SGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
             G +D A+ L E M+E G + +V+  T L+    K  R+DD   +      +G+ P+
Sbjct: 172 RMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPN 229



 Score = 86.3 bits (212), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 89/378 (23%), Positives = 150/378 (39%), Gaps = 64/378 (16%)

Query: 254 MPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRY 313
           +P  VTY++++    K+ +  E   L E  V SG  PD   ++ L   F +S   D    
Sbjct: 51  VPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALR 110

Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG-LTPDEKTLTALIKIY 372
           V +++ + G +P++V Y+ L++ + K G+   A  LF  M++SG   P+  T  +LI  +
Sbjct: 111 VFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGF 170

Query: 373 GKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPD 432
            +     +A+ L ERM E     D + Y TL+N                      +CK  
Sbjct: 171 CRMGKMDEAMNLLERMAETGSSPDVVTYTTLMN---------------------GFCKL- 208

Query: 433 NYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFG 492
                           +D+A +L  +M+  G+  NV+  T L+  L +  R+ D V + G
Sbjct: 209 --------------ARLDDAYDLLNQMTRKGLTPNVVTFTSLMDGLCRENRLSDAVHILG 254

Query: 493 VSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAF------LNLIEDN 546
               +   P       +L         E+  K +       P +V+F      L  +  +
Sbjct: 255 EMRRKSCSPTVYTYNTILDGYCRVNQLEEARKFMLEEMDCPPNVVSFNIMIRGLCKVNRS 314

Query: 547 STGFENIKEEFRNVIKDTEVDARRPFCN-------CLIDI-CRNRNLNERAHELLYLGTL 598
           S   E ++E            ARR  CN        +ID+ CR + ++E       +   
Sbjct: 315 SEAMELVEE------------ARRRRCNPDVVMYTTVIDVLCREKKVDEACRVYRKMLEE 362

Query: 599 YGLYP-GLHNKTLDEWSL 615
            G  P  +   T D W L
Sbjct: 363 PGCLPNSITYSTFDYWPL 380


>gi|225459754|ref|XP_002284756.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Vitis vinifera]
          Length = 531

 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 155/319 (48%), Gaps = 5/319 (1%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           FFNW  +   F      Y   +      RQF L  QL + M +  +E+   T++ ++   
Sbjct: 132 FFNWATNLEEFGHSPEPYMEMIDLAGKVRQFDLAWQLIDLMKTRNVEIPVETFTILVRRY 191

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +  L  EA+  F RM   G  PD++ +S ++   +K  +  E  S ++  +   ++PD 
Sbjct: 192 VKAGLAAEAVHAFNRMEDYGCKPDKIAFSVVISSLSKKRRAIEAQSFFD-SLKDRFEPDV 250

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           + ++ L   +  +G+      V  EMK  G+QPN+  Y+ +++A+ ++G+   A  +F E
Sbjct: 251 VVYTSLVHGWCRAGNISEAERVFGEMKMAGIQPNVYTYSIVIDALCRSGQITRAHDVFSE 310

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL-NMCADIG 411
           M++ G  P+  T   L++++ KA   +  L+++ +M+    P D I YN L+ + C D  
Sbjct: 311 MIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDAITYNFLIESHCRDDN 370

Query: 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC 471
           L EEA ++   +K    C  +  S+  +       G+V++A  +F +M +L    N +  
Sbjct: 371 L-EEAVKILNSVKKG--CNLNASSFNPIFGCISKLGDVNSAHRMFAKMKDLKCRPNTVTY 427

Query: 472 TCLIQCLGKARRIDDLVRV 490
             L++     +  D ++++
Sbjct: 428 NILMRMFADKKSTDMVLKL 446



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 107/216 (49%), Gaps = 4/216 (1%)

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G  P+P  +  +  + G+   +D    ++  MK+  V+  +  +  L+    KAG    A
Sbjct: 143 GHSPEP--YMEMIDLAGKVRQFDLAWQLIDLMKTRNVEIPVETFTILVRRYVKAGLAAEA 200

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
              F+ M + G  PD+   + +I    K R A +A   ++ +++   P D ++Y +L++ 
Sbjct: 201 VHAFNRMEDYGCKPDKIAFSVVISSLSKKRRAIEAQSFFDSLKDRFEP-DVVVYTSLVHG 259

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               G + EAER+F +MK++   +P+ Y+Y+ +++     G +  A ++F EM ++G   
Sbjct: 260 WCRAGNISEAERVFGEMKMAG-IQPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDP 318

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           N +    L++   KA R + +++V+      G  PD
Sbjct: 319 NAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPD 354



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 102/253 (40%), Gaps = 37/253 (14%)

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
           E++  EM    I+ +  TYS +I    R      A + F  M   G  P+ +T++ ++ V
Sbjct: 270 ERVFGEMKMAGIQPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRV 329

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVL---------------------------- 298
           + K+G+ E+VL +Y +    G  PD I ++ L                            
Sbjct: 330 HVKAGRTEKVLQVYNQMKRLGCPPDAITYNFLIESHCRDDNLEEAVKILNSVKKGCNLNA 389

Query: 299 ---GKMFG---ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
                +FG   + GD +    +  +MK L  +PN V YN L+          +   L  E
Sbjct: 390 SSFNPIFGCISKLGDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFADKKSTDMVLKLRKE 449

Query: 353 MVESGLTPDEKTLTALIKIY-GKARWAKDALELWERMRENKWPMDFI-LYNTLLNMCADI 410
           M E+ + P+  T   LI  + G   W  +A   ++ M E K     + +Y  +L      
Sbjct: 450 MDENEIEPNANTYRVLISTFCGIGHW-NNAYSFFKEMIEEKCLRPSLPVYEMVLQQLRKA 508

Query: 411 GLVEEAERLFEDM 423
           G +++ E L E M
Sbjct: 509 GQLKKHEELVEKM 521



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 91/206 (44%), Gaps = 3/206 (1%)

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           P    F N+    ++ GR  +++ Q+ N+M       D ITY+ +I    R +  +EA++
Sbjct: 318 PNAITFNNLMRVHVKAGRTEKVL-QVYNQMKRLGCPPDAITYNFLIESHCRDDNLEEAVK 376

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
               + K G   +  +++ I    +K G V     ++ +      +P+ + +++L +MF 
Sbjct: 377 ILNSV-KKGCNLNASSFNPIFGCISKLGDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFA 435

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG-LTPDE 362
           +    D +  + +EM    ++PN   Y  L+      G    A S F EM+E   L P  
Sbjct: 436 DKKSTDMVLKLRKEMDENEIEPNANTYRVLISTFCGIGHWNNAYSFFKEMIEEKCLRPSL 495

Query: 363 KTLTALIKIYGKARWAKDALELWERM 388
                +++   KA   K   EL E+M
Sbjct: 496 PVYEMVLQQLRKAGQLKKHEELVEKM 521



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 40/177 (22%), Positives = 78/177 (44%), Gaps = 2/177 (1%)

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           P + I YN  ++S       +   ++ N  V     L+  +++ I  C  +    + A  
Sbjct: 352 PPDAITYNFLIESHCRDDNLEEAVKILNS-VKKGCNLNASSFNPIFGCISKLGDVNSAHR 410

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
            F +M      P+ VTY+ ++ ++A     + VL L +    +  +P+   + VL   F 
Sbjct: 411 MFAKMKDLKCRPNTVTYNILMRMFADKKSTDMVLKLRKEMDENEIEPNANTYRVLISTFC 470

Query: 304 ESGDYDGIRYVLQEM-KSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
             G ++      +EM +   ++P+L VY  +L+ + KAG+      L ++MV  G  
Sbjct: 471 GIGHWNNAYSFFKEMIEEKCLRPSLPVYEMVLQQLRKAGQLKKHEELVEKMVNRGFV 527


>gi|224123318|ref|XP_002319049.1| predicted protein [Populus trichocarpa]
 gi|222857425|gb|EEE94972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 157/336 (46%), Gaps = 6/336 (1%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           ++ +FF+ +  Q + P    + ++       G Q      L  +M+   +  + +T++ +
Sbjct: 229 EAMYFFSEMVDQGIPPNVVTYSSILHGFCNLG-QLNEATSLFKQMIGRNVMPNTVTFTIL 287

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
           +    +  +  EA   FE M + G+ PD  TYSA++D Y    +++E   L++  V  G+
Sbjct: 288 VDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGF 347

Query: 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348
            P    +++L     +S   +  + +L EM    + P+ V Y+TL++   +AG+P +A+ 
Sbjct: 348 APSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQK 407

Query: 349 LFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCA 408
           LF EM   GL PD  T + L+    K     +A  L + M+E+K      +YN L+    
Sbjct: 408 LFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHICIYNILIQGMC 467

Query: 409 DIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINV 468
           + G +E A  LF ++ +    +P   +YT M++     G  + A E+F +M   G   N 
Sbjct: 468 NFGKLEAARELFSNLFVKGI-QPSVVTYTVMISGLLKEGLSNEACEMFRKMVVNGCLPN- 525

Query: 469 MGCTCLIQCLGKARRID--DLVRVFGVSIDRGVKPD 502
             CT  +   G  R  D  + VR+    + RG   D
Sbjct: 526 -SCTYNVAIQGFLRNGDPSNAVRLIEEMVGRGFSAD 560



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 77/318 (24%), Positives = 153/318 (48%), Gaps = 3/318 (0%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCN--LFDEAIEW 244
            + +N  + SL   + +  +  L  +M  + I  +  T + +I C    N      A   
Sbjct: 69  VVVFNKLLGSLVKKKHYSTVISLCKQMDLSNIRPNVYTLTILINCLCHSNRDHVHFAFSA 128

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
             +M+K GL P  VT+  +L+      K+ + + L++     G+ P  I ++ + K   +
Sbjct: 129 LGKMFKLGLQPTHVTFGTLLNGLCSKAKIIDAVKLFDEIGKMGFAPSLITYTTIIKGLCK 188

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
            G       +L++M+  G +P++V YNT+++++ K  +   A   F EMV+ G+ P+  T
Sbjct: 189 IGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVVT 248

Query: 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
            ++++  +       +A  L+++M       + + +  L++     G++ EA R+FE M 
Sbjct: 249 YSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVFE-MM 307

Query: 425 LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484
             +  +PD Y+Y+A+++ Y     +D A +LF+ M   G A +V     LI    K+RR+
Sbjct: 308 TENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILINGHCKSRRL 367

Query: 485 DDLVRVFGVSIDRGVKPD 502
           ++   +     DR + PD
Sbjct: 368 NEAKTLLSEMYDRDLTPD 385



 Score =  115 bits (288), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 104/411 (25%), Positives = 186/411 (45%), Gaps = 12/411 (2%)

Query: 99  KPRRSVLSLQRQKRSTYSYNPRVRDLKLFARKL--NDCDNTEEAF--LRAITEIPHQPTR 154
           K   +V+SL +Q   + +  P V  L +    L  ++ D+   AF  L  + ++  QPT 
Sbjct: 83  KHYSTVISLCKQMDLS-NIRPNVYTLTILINCLCHSNRDHVHFAFSALGKMFKLGLQPTH 141

Query: 155 ENALLILNSLKFWQK---SYFFFNWIKSQNLFPMETIFYNVTMKSL-RFGRQFQLIEQLA 210
                +LN L    K   +   F+ I      P   I Y   +K L + G     + QL 
Sbjct: 142 VTFGTLLNGLCSKAKIIDAVKLFDEIGKMGFAP-SLITYTTIIKGLCKIGHTTNAL-QLL 199

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
            +M     + D + Y+T+I    +    +EA+ +F  M   G+ P+ VTYS+IL  +   
Sbjct: 200 KKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVVTYSSILHGFCNL 259

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
           G++ E  SL+++ +     P+ + F++L     + G     R V + M   GV+P+   Y
Sbjct: 260 GQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTY 319

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
           + L++      +   A+ LFD MV  G  P  +    LI  + K+R   +A  L   M +
Sbjct: 320 SALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYD 379

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
                D + Y+TL+      G  + A++LF++M  S    PD+ +Y+ +L+     G++D
Sbjct: 380 RDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEM-CSYGLLPDSITYSILLDGLCKHGHLD 438

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
            A  L + M E  +  ++     LIQ +    +++    +F     +G++P
Sbjct: 439 EAFRLLKAMQESKIEPHICIYNILIQGMCNFGKLEAARELFSNLFVKGIQP 489



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 95/208 (45%), Gaps = 9/208 (4%)

Query: 303 GESGDYDGIRYVLQEMKS----LGVQP--NLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356
           G   +Y+ +  V   + S    LG++P   +VV+N LL ++ K        SL  +M  S
Sbjct: 39  GFCSNYNNLHSVADAVASFNQLLGIRPLPPVVVFNKLLGSLVKKKHYSTVISLCKQMDLS 98

Query: 357 GLTPDEKTLTALIK--IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
            + P+  TLT LI    +        A     +M +       + + TLLN       + 
Sbjct: 99  NIRPNVYTLTILINCLCHSNRDHVHFAFSALGKMFKLGLQPTHVTFGTLLNGLCSKAKII 158

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
           +A +LF+++    +  P   +YT ++      G+  NA++L ++M E G   +V+    +
Sbjct: 159 DAVKLFDEIGKMGF-APSLITYTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTV 217

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           I  L K RR ++ +  F   +D+G+ P+
Sbjct: 218 IDSLCKDRRANEAMYFFSEMVDQGIPPN 245


>gi|168036199|ref|XP_001770595.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162678116|gb|EDQ64578.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 743

 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 114/501 (22%), Positives = 212/501 (42%), Gaps = 55/501 (10%)

Query: 95  VNPTKPRRSVLSLQRQKRSTYSYNPRVRDLKL-FARKLNDCDNTEEAFLRAITEIPHQPT 153
           V PT+   S++ L  QK      N +V D ++ F+  L        A+   I        
Sbjct: 77  VQPTRLTYSMMMLLYQK------NGKVEDAEVAFSHMLQSGIQVVAAYSAMIAIYTRCGF 130

Query: 154 RENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEM 213
            E A  I+  +   + +    NW+K  N +  +               + +  E + + M
Sbjct: 131 FEKAEKIMEDMWNHKIAPDRDNWLKQMNTYGQQG--------------KIEEAEHIMDTM 176

Query: 214 VSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKV 273
               + L  + Y+++IT   +  L+++A+  FE+M + GL PDEVTYS ++    ++GK+
Sbjct: 177 ERLGMHLGVVGYNSMITAYGKAGLYEKALRLFEKMKEAGLEPDEVTYSCMIGACGRAGKL 236

Query: 274 EEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTL 333
            + L  ++     G  P    F+ L  ++G++ +  GI  VL +MK+ G  P+    + +
Sbjct: 237 RDALDYFQAMKRLGIMPASSNFNTLISLYGKARNVVGIVRVLADMKNFGCTPDSQTLDAV 296

Query: 334 LEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKW 393
           + A  +AG+      +   + E+G   D ++   L+ +Y K    K+AL ++  MR+   
Sbjct: 297 VRAYERAGQTKKVVQVLSLLREAGWVEDTESYGTLLHVYLKCNLQKEALSVFSAMRKAGM 356

Query: 394 PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAI 453
                +  +L+  C D G+ E+A  +F DM+ S    P   +   M+N++G  G+V  A 
Sbjct: 357 APKEYMCRSLICACKDAGMFEDATNVFRDMQ-SAGVVPSLETSCTMINVHGLKGDVKQAE 415

Query: 454 ELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDR-GVKPDDRLCGCLLSV 512
           ELF  +      ++++    +I    +    ++  R++ +  +  G+ PD      +L +
Sbjct: 416 ELFRSLRSSVSKLDIIAYNVIINVYMRYGMHEEAFRIYKLMEEEDGLLPDSYTYHSMLRM 475

Query: 513 VSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPF 572
              C                        NL     T  E I    RN   D E+D     
Sbjct: 476 CQKC------------------------NL----QTQAEEIYWRLRN--SDVELD--EVM 503

Query: 573 CNCLIDICRNRNLNERAHELL 593
           CNC+++ C      E  H++ 
Sbjct: 504 CNCVLNTCARFLPLEEVHKIF 524



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 93/378 (24%), Positives = 166/378 (43%), Gaps = 35/378 (9%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN+  K L   +Q+ +I++L  +M+ +    D+ T++T+I  A + +  D A   F+ M 
Sbjct: 14  YNIMFKILGSRQQWPIIDELLGQMLGDGCVPDDYTFNTLIMSASKADYADYATRAFQMML 73

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG---------------------- 287
           + G+ P  +TYS ++ +Y K+GKVE+    +   + SG                      
Sbjct: 74  EKGVQPTRLTYSMMMLLYQKNGKVEDAEVAFSHMLQSGIQVVAAYSAMIAIYTRCGFFEK 133

Query: 288 --------WK----PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLE 335
                   W     PD   +      +G+ G  +   +++  M+ LG+   +V YN+++ 
Sbjct: 134 AEKIMEDMWNHKIAPDRDNWLKQMNTYGQQGKIEEAEHIMDTMERLGMHLGVVGYNSMIT 193

Query: 336 AMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPM 395
           A GKAG    A  LF++M E+GL PDE T + +I   G+A   +DAL+ ++ M+      
Sbjct: 194 AYGKAGLYEKALRLFEKMKEAGLEPDEVTYSCMIGACGRAGKLRDALDYFQAMKRLGIMP 253

Query: 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIEL 455
               +NTL+++      V    R+  DMK +  C PD+ +  A++  Y   G     +++
Sbjct: 254 ASSNFNTLISLYGKARNVVGIVRVLADMK-NFGCTPDSQTLDAVVRAYERAGQTKKVVQV 312

Query: 456 FEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSL 515
              + E G   +      L+    K     + + VF      G+ P + +C  L+     
Sbjct: 313 LSLLREAGWVEDTESYGTLLHVYLKCNLQKEALSVFSAMRKAGMAPKEYMCRSLICACKD 372

Query: 516 CETSEDVGKVITCLQQAN 533
               ED   V   +Q A 
Sbjct: 373 AGMFEDATNVFRDMQSAG 390



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 150/312 (48%), Gaps = 15/312 (4%)

Query: 185 METIFYNVTMK-SLRFG------RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNL 237
           ++ I YNV +   +R+G      R ++L+E+       + +  D+ TY +++   ++CNL
Sbjct: 428 LDIIAYNVIINVYMRYGMHEEAFRIYKLMEE------EDGLLPDSYTYHSMLRMCQKCNL 481

Query: 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
             +A E + R+  + +  DEV  + +L+  A+   +EEV  +++  +  G  P+ I F+V
Sbjct: 482 QTQAEEIYWRLRNSDVELDEVMCNCVLNTCARFLPLEEVHKIFQEMIDVGCIPNTITFNV 541

Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
           +  ++G+SG  D  R   +  + LGV  + + ++TL+ + GK        +   EM  +G
Sbjct: 542 MIDLYGKSGMLDRARDASKLAQQLGV-ADKITFSTLINSYGKKQDFRNMEATLWEMQNAG 600

Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417
                +    ++  YGKA       ++  RM ++   MD   YN L+N+      + E E
Sbjct: 601 HGGSLEAYNCVLDAYGKAGHLDKLEDVIARMEKSGLQMDLASYNILINIYGRHTKIAEME 660

Query: 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
            LF  M+   +  PD ++Y  M+  YG     D A++ F+ M + G+  + +    L+  
Sbjct: 661 ALFHKMQEEGFI-PDRWTYNTMIRTYGYADYPDKAVDTFKMMQDSGIMPDRVTYVMLVAA 719

Query: 478 LGKARRIDDLVR 489
             KA  + +  R
Sbjct: 720 FEKAGNLLEAAR 731



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 133/298 (44%), Gaps = 5/298 (1%)

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYK-TGLMPDEVTYSAILD 265
           E+L   + S+  +LD I Y+ II    R  + +EA   ++ M +  GL+PD  TY ++L 
Sbjct: 415 EELFRSLRSSVSKLDIIAYNVIINVYMRYGMHEEAFRIYKLMEEEDGLLPDSYTYHSMLR 474

Query: 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325
           +  K     +   +Y R   S  + D +  + +          + +  + QEM  +G  P
Sbjct: 475 MCQKCNLQTQAEEIYWRLRNSDVELDEVMCNCVLNTCARFLPLEEVHKIFQEMIDVGCIP 534

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA-LEL 384
           N + +N +++  GK+G    AR       + G+  D+ T + LI  YGK +  ++    L
Sbjct: 535 NTITFNVMIDLYGKSGMLDRARDASKLAQQLGV-ADKITFSTLINSYGKKQDFRNMEATL 593

Query: 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYG 444
           WE M+          YN +L+     G +++ E +   M+ S   + D  SY  ++NIYG
Sbjct: 594 WE-MQNAGHGGSLEAYNCVLDAYGKAGHLDKLEDVIARMEKSG-LQMDLASYNILINIYG 651

Query: 445 SGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
               +     LF +M E G   +      +I+  G A   D  V  F +  D G+ PD
Sbjct: 652 RHTKIAEMEALFHKMQEEGFIPDRWTYNTMIRTYGYADYPDKAVDTFKMMQDSGIMPD 709



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 106/218 (48%), Gaps = 2/218 (0%)

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
           +++++ K+ G    +  I  +L +M   G  P+   +NTL+ +  KA     A   F  M
Sbjct: 13  SYNIMFKILGSRQQWPIIDELLGQMLGDGCVPDDYTFNTLIMSASKADYADYATRAFQMM 72

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
           +E G+ P   T + ++ +Y K    +DA   +  M ++   +    Y+ ++ +    G  
Sbjct: 73  LEKGVQPTRLTYSMMMLLYQKNGKVEDAEVAFSHMLQSGIQV-VAAYSAMIAIYTRCGFF 131

Query: 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTC 473
           E+AE++ EDM  +    PD  ++   +N YG  G ++ A  + + M  LG+ + V+G   
Sbjct: 132 EKAEKIMEDM-WNHKIAPDRDNWLKQMNTYGQQGKIEEAEHIMDTMERLGMHLGVVGYNS 190

Query: 474 LIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
           +I   GKA   +  +R+F    + G++PD+    C++ 
Sbjct: 191 MITAYGKAGLYEKALRLFEKMKEAGLEPDEVTYSCMIG 228


>gi|449449675|ref|XP_004142590.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Cucumis sativus]
          Length = 581

 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 154/316 (48%), Gaps = 4/316 (1%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           F+ ++S+   P + + YN+ + SL    + +L  ++ +E++ +  +   ITY+ +I    
Sbjct: 154 FDRMRSRGFSP-DVVTYNIMIGSLCSRGKLELAFEVMDELLKDGCKPSVITYTILIEATI 212

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
                +EA+E F+ +   GL PD  TY+AI+    K G  +  L       A G  PD +
Sbjct: 213 LEGRINEALELFDELVSRGLRPDLYTYNAIIRGICKEGMEDRALDFVRHLSARGCNPDVV 272

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
           ++++L + F     ++    ++++M   G +PN+V ++ L+ +  + G+   A ++ + M
Sbjct: 273 SYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNVVTHSILISSFCREGRVREAVNVLEVM 332

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
            E GLTPD  +   LI  + K      A+E  E+M  +    D + YNT+L      G  
Sbjct: 333 KEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMVSDGCLPDIVNYNTILATLCKFGCA 392

Query: 414 EEAERLFEDMKLSDY-CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
           + A  +FE  KL +  C P   +Y  M +   S GN   A+E+  EM   G+  + +   
Sbjct: 393 DLALDVFE--KLDEVGCPPTVRAYNTMFSALWSCGNKIKALEMISEMIRKGIDPDEITYN 450

Query: 473 CLIQCLGKARRIDDLV 488
            LI CL +   +D+ +
Sbjct: 451 SLISCLCRDGLVDEAI 466



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 132/285 (46%), Gaps = 13/285 (4%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + YN+ ++S     +++  E+L  +MV +  E + +T+S +I+   R     EA+   
Sbjct: 270 DVVSYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNVVTHSILISSFCREGRVREAVNVL 329

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           E M + GL PD  +Y  ++  + K G+++  +   E+ V+ G  PD + ++ +     + 
Sbjct: 330 EVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMVSDGCLPDIVNYNTILATLCKF 389

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G  D    V +++  +G  P +  YNT+  A+   G    A  +  EM+  G+ PDE T 
Sbjct: 390 GCADLALDVFEKLDEVGCPPTVRAYNTMFSALWSCGNKIKALEMISEMIRKGIDPDEITY 449

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYN-TLLNMCADIGLVEEAERLFEDMK 424
            +LI    +     +A+ L   M   ++    I +N  LL MC       +A R+FE ++
Sbjct: 450 NSLISCLCRDGLVDEAIGLLVDMEATRFQPTVISFNIVLLGMC-------KAHRVFEGIE 502

Query: 425 L-----SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
           L        C P+  SY  ++      G    A+EL   +  LGV
Sbjct: 503 LLITMVEKGCLPNETSYVLLIEGIAYAGWRAEAMELANSLYRLGV 547



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 76/324 (23%), Positives = 141/324 (43%), Gaps = 1/324 (0%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN  +       Q     Q+ + M S     D +TY+ +I         + A E  + + 
Sbjct: 134 YNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFEVMDELL 193

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
           K G  P  +TY+ +++     G++ E L L++  V+ G +PD   ++ + +   + G  D
Sbjct: 194 KDGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRPDLYTYNAIIRGICKEGMED 253

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
                ++ + + G  P++V YN LL +     +      L  +MV SG  P+  T + LI
Sbjct: 254 RALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNVVTHSILI 313

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
             + +    ++A+ + E M+E     D   Y+ L++     G ++ A    E M +SD C
Sbjct: 314 SSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKM-VSDGC 372

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
            PD  +Y  +L      G  D A+++FE++ E+G    V     +   L         + 
Sbjct: 373 LPDIVNYNTILATLCKFGCADLALDVFEKLDEVGCPPTVRAYNTMFSALWSCGNKIKALE 432

Query: 490 VFGVSIDRGVKPDDRLCGCLLSVV 513
           +    I +G+ PD+     L+S +
Sbjct: 433 MISEMIRKGIDPDEITYNSLISCL 456



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 119/248 (47%), Gaps = 1/248 (0%)

Query: 255 PDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYV 314
           PD  +Y+A++  ++K+ +++    +++R  + G+ PD + ++++       G  +    V
Sbjct: 129 PDVYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFEV 188

Query: 315 LQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK 374
           + E+   G +P+++ Y  L+EA    G+   A  LFDE+V  GL PD  T  A+I+   K
Sbjct: 189 MDELLKDGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRPDLYTYNAIIRGICK 248

Query: 375 ARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNY 434
                 AL+    +       D + YN LL    +    E+ ERL +DM LS  C+P+  
Sbjct: 249 EGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSG-CEPNVV 307

Query: 435 SYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVS 494
           +++ +++ +   G V  A+ + E M E G+  +      LI    K  R+D  +      
Sbjct: 308 THSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKM 367

Query: 495 IDRGVKPD 502
           +  G  PD
Sbjct: 368 VSDGCLPD 375



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 134/297 (45%), Gaps = 3/297 (1%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D  +Y+ +I+   + N  D A + F+RM   G  PD VTY+ ++      GK+E    + 
Sbjct: 130 DVYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFEVM 189

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
           +  +  G KP  I +++L +     G  +    +  E+ S G++P+L  YN ++  + K 
Sbjct: 190 DELLKDGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRPDLYTYNAIIRGICKE 249

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIY-GKARWAKDALELWERMRENKWPMDFIL 399
           G    A      +   G  PD  +   L++ +  K+RW +D   L + M  +    + + 
Sbjct: 250 GMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRW-EDGERLMKDMVLSGCEPNVVT 308

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           ++ L++     G V EA  + E MK      PD+YSY  +++ +   G +D AIE  E+M
Sbjct: 309 HSILISSFCREGRVREAVNVLEVMKEKGL-TPDSYSYDPLISAFCKEGRLDLAIEYLEKM 367

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLC 516
              G   +++    ++  L K    D  + VF    + G  P  R    + S +  C
Sbjct: 368 VSDGCLPDIVNYNTILATLCKFGCADLALDVFEKLDEVGCPPTVRAYNTMFSALWSC 424



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 113/274 (41%), Gaps = 35/274 (12%)

Query: 263 ILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES----------------G 306
           +L+   ++GK  E L   E  V+ G+KPD +  + L K F  S                G
Sbjct: 68  LLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVMEILETYG 127

Query: 307 DYDGIRY------------------VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348
           D D   Y                  V   M+S G  P++V YN ++ ++   GK  LA  
Sbjct: 128 DPDVYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFE 187

Query: 349 LFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCA 408
           + DE+++ G  P   T T LI+         +ALEL++ +       D   YN ++    
Sbjct: 188 VMDELLKDGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRPDLYTYNAIIRGIC 247

Query: 409 DIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINV 468
             G+ + A      +  +  C PD  SY  +L  + +    ++   L ++M   G   NV
Sbjct: 248 KEGMEDRALDFVRHLS-ARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNV 306

Query: 469 MGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           +  + LI    +  R+ + V V  V  ++G+ PD
Sbjct: 307 VTHSILISSFCREGRVREAVNVLEVMKEKGLTPD 340


>gi|449531171|ref|XP_004172561.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
          Length = 761

 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 79/258 (30%), Positives = 132/258 (51%), Gaps = 7/258 (2%)

Query: 249 YKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY 308
           Y     P+ ++YS I+D   K G+ +E   L++   A G  PD I+++ L   F  SG +
Sbjct: 475 YGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKW 534

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
              +Y+  EM  +GVQP++  ++ L++ + K GK   A  L + M++ G  P+  T T L
Sbjct: 535 KDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTL 594

Query: 369 IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428
           +K         +A +L+ +M++     D + Y TL+      G ++ A  L + M LSD 
Sbjct: 595 VKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKM-LSDT 653

Query: 429 C------KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKAR 482
                  KPD  SY+ +++     G  D A ELF+EM  LGV  NV+  T LI    ++ 
Sbjct: 654 GQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSG 713

Query: 483 RIDDLVRVFGVSIDRGVK 500
           +++D   +F   +D+GV+
Sbjct: 714 KLEDAKHLFNEMVDQGVQ 731



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/321 (28%), Positives = 158/321 (49%), Gaps = 21/321 (6%)

Query: 199 FGRQFQLIE--QLANEMVSNEIELDNITYSTIIT--CAKRCNLFDEAIEWFERMYKTGLM 254
           F ++ ++IE  +L   MV     LD +TYST+I   C K  +   EA + F  M K G  
Sbjct: 20  FCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMK--HRISEATQLFMSMKKLGCR 77

Query: 255 PDEVTYSAILDVYAKSGKVEEVLSLYERGV------ASGWKPDPIAFSVLGKMFGESGDY 308
           PD + Y  ++    ++GK+   L L++  +          KP  +++S++     +    
Sbjct: 78  PDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKPTLVSYSIIIDGLCKDRRE 137

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
           D  R + +EMK+ G+ P+++ Y +L+    ++GK   A+ LF+EM++ G+  D  T + L
Sbjct: 138 DEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFNEMLDVGIRSDVTTSSML 197

Query: 369 IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM-KLSD 427
           I I  K     +A EL E M +    +D + Y+TL+        + EA RLF  M KL  
Sbjct: 198 IDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMKHRISEATRLFMSMQKLG- 256

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM----SELGVAI--NVMGCTCLIQCLGKA 481
            C+PD  +Y  ++      GN++ A++L +EM       G+     ++  + +I  L K 
Sbjct: 257 -CRPDAIAYGTLMKGLCQTGNINTALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKD 315

Query: 482 RRIDDLVRVFGVSIDRGVKPD 502
           RR D+   +F     +G+ PD
Sbjct: 316 RREDEARELFKEMKAQGIMPD 336



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 93/323 (28%), Positives = 157/323 (48%), Gaps = 14/323 (4%)

Query: 176 WIKSQNLFPMETIFYNVT-MKSLRFGRQFQLIEQLANEMVSN------EIELDNITYSTI 228
           ++K Q L  M  +    T MK L      ++  +L   M+S+        + + I+YS I
Sbjct: 430 FLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSII 489

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
           I    +C   DEA E F+ M   G++PD ++Y++++  + +SGK ++   L+   V  G 
Sbjct: 490 IDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGV 549

Query: 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348
           +PD   FSVL  M  + G       +L+ M   G  PN V Y TL++ +    +   A  
Sbjct: 550 QPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQ 609

Query: 349 LFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN------KWPMDFILYNT 402
           LF +M + G  PD  T   L+K   +    K ALEL ++M  +       +  D I Y+ 
Sbjct: 610 LFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISYSI 669

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
           +++     G  +EA  LF++MK      P+  SYT++++ +   G +++A  LF EM + 
Sbjct: 670 IIDGLCKHGREDEARELFKEMKALGVI-PNVISYTSLIHGFCRSGKLEDAKHLFNEMVDQ 728

Query: 463 GVAINVMGCTCLIQCLGKARRID 485
           GV +N +  + +I    K  +ID
Sbjct: 729 GVQLNAVTYSVMIHGFCKEGQID 751



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 102/392 (26%), Positives = 172/392 (43%), Gaps = 67/392 (17%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFG---RQFQLIEQLANEMVSNEIE---- 219
           W+K+   FN +          I  +VT  S+      ++ ++IE  ANE++   I+    
Sbjct: 172 WEKAKCLFNEMLDVG------IRSDVTTSSMLIDILCKEGKVIE--ANELLEVMIQRGCI 223

Query: 220 LDNITYSTIIT--CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL 277
           LD +TYST+I   C K  +   EA   F  M K G  PD + Y  ++    ++G +   L
Sbjct: 224 LDIVTYSTLIKGLCMK--HRISEATRLFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTAL 281

Query: 278 SLYER--------GV---------------------------------ASGWKPDPIAFS 296
            L++         G+                                 A G  PD I+++
Sbjct: 282 QLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGIMPDVISYT 341

Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356
            L   F  SG ++  + +  EM  +G+QP++   + L++ + K GK   A  L + +++ 
Sbjct: 342 TLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQR 401

Query: 357 GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEA 416
           G  PD  T T L+K          A +L+ +M++     + +   TL+      G ++ A
Sbjct: 402 GCIPDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIA 461

Query: 417 ERLFEDMKLSDY------CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG 470
             L ++M LSD       CKP+  SY+ +++     G  D A ELF+EM  LGV  +V+ 
Sbjct: 462 LELHKNM-LSDTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVIS 520

Query: 471 CTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            T LI    ++ +  D   +F   +D GV+PD
Sbjct: 521 YTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPD 552



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 92/329 (27%), Positives = 152/329 (46%), Gaps = 13/329 (3%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSN------EIELDNITYSTIITCAKRCNLFD 239
           + I Y   MK L          QL  EM+++      + +   I+YS II    +    D
Sbjct: 260 DAIAYGTLMKGLCQTGNINTALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRRED 319

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           EA E F+ M   G+MPD ++Y+ ++  +  SGK E+   L+   +  G +PD    SVL 
Sbjct: 320 EARELFKEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLI 379

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
            M  + G       +L+ +   G  P++V   TL++ +    +   A  LF +M + G  
Sbjct: 380 DMLCKKGKVIEANKLLEVVIQRGCIPDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCM 439

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDF------ILYNTLLNMCADIGLV 413
           P+  T   L+K   ++   K ALEL + M  +  P         I Y+ +++     G  
Sbjct: 440 PNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGRE 499

Query: 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTC 473
           +EA  LF++MK      PD  SYT++++ +   G   +A  LF EM ++GV  +V   + 
Sbjct: 500 DEARELFKEMKALGVI-PDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSV 558

Query: 474 LIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           LI  L K  ++ +   +  V I RG  P+
Sbjct: 559 LIDMLCKEGKVIEANELLEVMIQRGCIPN 587



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 83/330 (25%), Positives = 146/330 (44%), Gaps = 13/330 (3%)

Query: 185 METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEW 244
           ++ + Y+  +K L    +     QL   M       D I Y T++    +    + A+  
Sbjct: 43  LDIVTYSTLIKGLCMKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHL 102

Query: 245 FERM------YKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
            + M      Y     P  V+YS I+D   K  + +E   L++   A G  PD I+++ L
Sbjct: 103 HQEMLNDTSQYGIKCKPTLVSYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSL 162

Query: 299 GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
              F  SG ++  + +  EM  +G++ ++   + L++ + K GK   A  L + M++ G 
Sbjct: 163 IHGFCRSGKWEKAKCLFNEMLDVGIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGC 222

Query: 359 TPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAER 418
             D  T + LIK         +A  L+  M++     D I Y TL+      G +  A +
Sbjct: 223 ILDIVTYSTLIKGLCMKHRISEATRLFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTALQ 282

Query: 419 LFEDMKLSDY------CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
           L ++M L+D       CKP   SY+ +++        D A ELF+EM   G+  +V+  T
Sbjct: 283 LHQEM-LNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGIMPDVISYT 341

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            LI     + + +    +F   +D G++PD
Sbjct: 342 TLIHGFCLSGKWEKAKCLFNEMLDVGIQPD 371



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 133/289 (46%), Gaps = 13/289 (4%)

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M   G+ PD  T   ++D++ K GKV E   L E  V  G   D + +S L K       
Sbjct: 1   MLHVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHR 60

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMV----ESGL--TPD 361
                 +   MK LG +P+ + Y TL++ + + GK  +A  L  EM+    + G+   P 
Sbjct: 61  ISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKPT 120

Query: 362 EKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFE 421
             + + +I    K R   +A EL++ M+      D I Y +L++     G  E+A+ LF 
Sbjct: 121 LVSYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFN 180

Query: 422 DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
           +M L    + D  + + +++I    G V  A EL E M + G  ++++  + LI+ L   
Sbjct: 181 EM-LDVGIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMK 239

Query: 482 RRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQ 530
            RI +  R+F      G +PD    G L+    LC+T    G + T LQ
Sbjct: 240 HRISEATRLFMSMQKLGCRPDAIAYGTLMK--GLCQT----GNINTALQ 282


>gi|449455399|ref|XP_004145440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like [Cucumis sativus]
          Length = 576

 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 92/383 (24%), Positives = 175/383 (45%), Gaps = 5/383 (1%)

Query: 152 PTRENALLILNSL---KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           PT +   L+L +       +K+   F  ++   L P   I YN  +  L  G       +
Sbjct: 188 PTEDTYALLLKAYCKSGLLEKAEAVFAEMRKYGLSP-SAIVYNAYIDGLVKGGNNVKAVE 246

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           + + M  +  +    TY+ +I    + +    A   F+ M      P+  T++A+++  A
Sbjct: 247 IFHRMKRDGCQPTTDTYTMLINVYGKESKSHMAQNIFDEMRTQRCKPNICTFTALVNALA 306

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           + G  E+   ++E+   +G++PD  A++ L + +  +G   G   +   M+ +G +P+  
Sbjct: 307 REGLCEKAEEIFEQMQEAGYEPDVYAYNALMESYSRAGFPYGAAEIFSLMQHMGCEPDRA 366

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            YN +++A G+AG    A+++F+EM   G+TP  K+   L+  Y  A       ++  +M
Sbjct: 367 SYNIMVDAYGRAGLHEDAQAVFEEMKRIGITPTMKSHMLLLSAYSSAGNVAKCEDIIGQM 426

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
            ++    D  + N++LN+   +G   + E LF  M+    C+ D  +Y  ++N+YG  G 
Sbjct: 427 HKSGLKPDTFVMNSMLNLYGRLGQFGKMEDLFSTMQKGP-CRADISTYNILINVYGRAGF 485

Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGC 508
           V+   ELF+ +    +  +V+  T  I    + +     + +F   ID G  PD      
Sbjct: 486 VERMEELFQLLPAKNLEPDVVTWTSRIGAYSRKKLYKRCLELFEKMIDAGCYPDGGTAKV 545

Query: 509 LLSVVSLCETSEDVGKVITCLQQ 531
           LLS  S  E  E V  V+  + +
Sbjct: 546 LLSACSSEEQIEQVTNVVRTMHK 568



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 85/372 (22%), Positives = 161/372 (43%), Gaps = 34/372 (9%)

Query: 165 KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNIT 224
           K W        WI +++ F  + I YN+ M +      ++ +E    E++ +       T
Sbjct: 133 KKWGPIILICEWIMNKSTFRPDVIVYNLLMDAYGQRSLYKDVESTYLELLESHCIPTEDT 192

Query: 225 YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
           Y+ ++    +  L ++A   F  M K GL P  + Y+A +D   K G   + + ++ R  
Sbjct: 193 YALLLKAYCKSGLLEKAEAVFAEMRKYGLSPSAIVYNAYIDGLVKGGNNVKAVEIFHRMK 252

Query: 285 ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344
             G +P    +++L  ++G+       + +  EM++   +PN+  +  L+ A+ + G   
Sbjct: 253 RDGCQPTTDTYTMLINVYGKESKSHMAQNIFDEMRTQRCKPNICTFTALVNALAREGLCE 312

Query: 345 LARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
            A  +F++M E+G  PD     AL++ Y +A +   A E++  M+      D   YN ++
Sbjct: 313 KAEEIFEQMQEAGYEPDVYAYNALMESYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMV 372

Query: 405 NMCADIGLVEEAERLFEDMK--------------LSDYC--------------------K 430
           +     GL E+A+ +FE+MK              LS Y                     K
Sbjct: 373 DAYGRAGLHEDAQAVFEEMKRIGITPTMKSHMLLLSAYSSAGNVAKCEDIIGQMHKSGLK 432

Query: 431 PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRV 490
           PD +   +MLN+YG  G      +LF  M +     ++     LI   G+A  ++ +  +
Sbjct: 433 PDTFVMNSMLNLYGRLGQFGKMEDLFSTMQKGPCRADISTYNILINVYGRAGFVERMEEL 492

Query: 491 FGVSIDRGVKPD 502
           F +   + ++PD
Sbjct: 493 FQLLPAKNLEPD 504



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 129/316 (40%), Gaps = 40/316 (12%)

Query: 151 QPTRENALLILNSLKFWQKSYF---FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIE 207
           QPT +   +++N      KS+     F+ +++Q   P    F  +     R G   +  E
Sbjct: 257 QPTTDTYTMLINVYGKESKSHMAQNIFDEMRTQRCKPNICTFTALVNALAREG-LCEKAE 315

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           ++  +M     E D   Y+ ++    R      A E F  M   G  PD  +Y+ ++D Y
Sbjct: 316 EIFEQMQEAGYEPDVYAYNALMESYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAY 375

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            ++G  E+  +++E                                   EMK +G+ P +
Sbjct: 376 GRAGLHEDAQAVFE-----------------------------------EMKRIGITPTM 400

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
             +  LL A   AG       +  +M +SGL PD   + +++ +YG+        +L+  
Sbjct: 401 KSHMLLLSAYSSAGNVAKCEDIIGQMHKSGLKPDTFVMNSMLNLYGRLGQFGKMEDLFST 460

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           M++     D   YN L+N+    G VE  E LF+ +   +  +PD  ++T+ +  Y    
Sbjct: 461 MQKGPCRADISTYNILINVYGRAGFVERMEELFQLLPAKNL-EPDVVTWTSRIGAYSRKK 519

Query: 448 NVDNAIELFEEMSELG 463
                +ELFE+M + G
Sbjct: 520 LYKRCLELFEKMIDAG 535


>gi|357125910|ref|XP_003564632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like isoform 1 [Brachypodium distachyon]
 gi|357125912|ref|XP_003564633.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like isoform 2 [Brachypodium distachyon]
          Length = 704

 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 102/415 (24%), Positives = 194/415 (46%), Gaps = 24/415 (5%)

Query: 103 SVLSLQRQKRSTYSYNPRVR------DLKLFARKLNDCDN-----TEEAFLRAITEIPHQ 151
           + L+  R+  S    NP VR      D  + AR+ +D D      +  AF R I      
Sbjct: 102 AALAAFRRLPSFLGCNPGVRSHNALLDAFVRARRFSDADAFFASLSHGAFGRRIA----- 156

Query: 152 PTRENALLILNSLKF---WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           P  +   ++L SL       ++   F+ ++ + L P + I Y+  M       +      
Sbjct: 157 PNLQTYNIMLRSLCVRGDLDRAVTLFDSLRCRGLAP-DRITYSTLMSGFVKNNRLDNALY 215

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKT-GLMPDEVTYSAILDVY 267
           L +EM S E++ D + Y+ ++    R   F++A+  +E++ +  G  P+  TY+ +LD  
Sbjct: 216 LLDEMPSYEVQPDAVCYNALLGGCFRNGEFEKAMRVWEQLVRDPGASPNLATYNVMLDGL 275

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            K G  +E   ++ER VA+  +PD I +  +      S D D    V  EM   G+ P++
Sbjct: 276 CKLGMFKEAGDVWERMVANNHQPDMITYGTMIHGLCRSTDVDSAARVYSEMIKTGLVPDV 335

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
           V+YN+LL+    AG+ G A   +D M  SG+  +  +   ++K          A +LWE 
Sbjct: 336 VIYNSLLKGFCHAGRVGEAWKFWDSMSVSGIR-NVTSYNIMLKGLFDGGMVDKATDLWEL 394

Query: 388 M-RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
           + +++    D + ++T+++   + G   ++ ++ E+ + S   + D +SY++M++     
Sbjct: 395 LEKDDSLSPDMVTFSTMIHGLCEKGFANKSLQILEEARTSGK-ELDEFSYSSMISGLCKD 453

Query: 447 GNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
           G +D+A++L+E++S      N      LI    +A +  D +RV+    +    P
Sbjct: 454 GRLDDAVKLYEKISMDSFKPNSHIYNALINGFCQASKFSDAIRVYSQMAENDCSP 508



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/339 (24%), Positives = 167/339 (49%), Gaps = 18/339 (5%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN+ ++SL           L + +    +  D ITYST+++   + N  D A+   + M 
Sbjct: 162 YNIMLRSLCVRGDLDRAVTLFDSLRCRGLAPDRITYSTLMSGFVKNNRLDNALYLLDEMP 221

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS-GWKPDPIAFSVLGK------MF 302
              + PD V Y+A+L    ++G+ E+ + ++E+ V   G  P+   ++V+        MF
Sbjct: 222 SYEVQPDAVCYNALLGGCFRNGEFEKAMRVWEQLVRDPGASPNLATYNVMLDGLCKLGMF 281

Query: 303 GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
            E+GD      V + M +   QP+++ Y T++  + ++     A  ++ EM+++GL PD 
Sbjct: 282 KEAGD------VWERMVANNHQPDMITYGTMIHGLCRSTDVDSAARVYSEMIKTGLVPDV 335

Query: 363 KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED 422
               +L+K +  A    +A + W+ M  +    +   YN +L    D G+V++A  L+E 
Sbjct: 336 VIYNSLLKGFCHAGRVGEAWKFWDSMSVSGI-RNVTSYNIMLKGLFDGGMVDKATDLWEL 394

Query: 423 MKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKAR 482
           ++  D   PD  +++ M++     G  + ++++ EE    G  ++    + +I  L K  
Sbjct: 395 LEKDDSLSPDMVTFSTMIHGLCEKGFANKSLQILEEARTSGKELDEFSYSSMISGLCKDG 454

Query: 483 RIDDLVRVF-GVSIDRGVKPDDRLCGCLLSVVSLCETSE 520
           R+DD V+++  +S+D   KP+  +   L++    C+ S+
Sbjct: 455 RLDDAVKLYEKISMD-SFKPNSHIYNALIN--GFCQASK 490



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 150/317 (47%), Gaps = 9/317 (2%)

Query: 190 YNVTMKSLRFG----RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           YN+ +K L  G    +   L E L  +   + +  D +T+ST+I         +++++  
Sbjct: 372 YNIMLKGLFDGGMVDKATDLWELLEKD---DSLSPDMVTFSTMIHGLCEKGFANKSLQIL 428

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           E    +G   DE +YS+++    K G++++ + LYE+     +KP+   ++ L   F ++
Sbjct: 429 EEARTSGKELDEFSYSSMISGLCKDGRLDDAVKLYEKISMDSFKPNSHIYNALINGFCQA 488

Query: 306 GDY-DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
             + D IR V  +M      P  + YNTL+  + KA K   A     EM+E G   D  T
Sbjct: 489 SKFSDAIR-VYSQMAENDCSPTTITYNTLIHGLCKAEKYLEASRFTREMLEKGCMLDVNT 547

Query: 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
             +LI+   + +    AL LW ++ +     D +++N L++     G V+EA +L  +MK
Sbjct: 548 YGSLIRGLCRDKKIDGALALWNQILDKGLQTDVVMHNILIHGLCSAGKVDEASQLLSEMK 607

Query: 425 LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484
             + C P+  +Y  +++ +   G  D A  L+  + E G+  +++     I+ L    R 
Sbjct: 608 EKNNCCPNVVTYNTLMDGFYETGCFDKAASLWMAILENGLVPDIISYNTRIKGLCSCNRT 667

Query: 485 DDLVRVFGVSIDRGVKP 501
            + V++    +  G+ P
Sbjct: 668 PEGVQLLNEMLASGIIP 684



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/359 (22%), Positives = 171/359 (47%), Gaps = 6/359 (1%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YNV +  L     F+    +   MV+N  + D ITY T+I    R    D A   +  M 
Sbjct: 268 YNVMLDGLCKLGMFKEAGDVWERMVANNHQPDMITYGTMIHGLCRSTDVDSAARVYSEMI 327

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
           KTGL+PD V Y+++L  +  +G+V E    ++    SG + +  +++++ K   + G  D
Sbjct: 328 KTGLVPDVVIYNSLLKGFCHAGRVGEAWKFWDSMSVSGIR-NVTSYNIMLKGLFDGGMVD 386

Query: 310 GIRYVLQEM-KSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
               + + + K   + P++V ++T++  + + G    +  + +E   SG   DE + +++
Sbjct: 387 KATDLWELLEKDDSLSPDMVTFSTMIHGLCEKGFANKSLQILEEARTSGKELDEFSYSSM 446

Query: 369 IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428
           I    K     DA++L+E++  + +  +  +YN L+N         +A R++  M  +D 
Sbjct: 447 ISGLCKDGRLDDAVKLYEKISMDSFKPNSHIYNALINGFCQASKFSDAIRVYSQMAEND- 505

Query: 429 CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLV 488
           C P   +Y  +++          A     EM E G  ++V     LI+ L + ++ID  +
Sbjct: 506 CSPTTITYNTLIHGLCKAEKYLEASRFTREMLEKGCMLDVNTYGSLIRGLCRDKKIDGAL 565

Query: 489 RVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN---PKLVAFLNLIE 544
            ++   +D+G++ D  +   L+  +      ++  ++++ +++ N   P +V +  L++
Sbjct: 566 ALWNQILDKGLQTDVVMHNILIHGLCSAGKVDEASQLLSEMKEKNNCCPNVVTYNTLMD 624



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 104/237 (43%), Gaps = 1/237 (0%)

Query: 179 SQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLF 238
           S + F   +  YN  +       +F    ++ ++M  N+     ITY+T+I    +   +
Sbjct: 467 SMDSFKPNSHIYNALINGFCQASKFSDAIRVYSQMAENDCSPTTITYNTLIHGLCKAEKY 526

Query: 239 DEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
            EA  +   M + G M D  TY +++    +  K++  L+L+ + +  G + D +  ++L
Sbjct: 527 LEASRFTREMLEKGCMLDVNTYGSLIRGLCRDKKIDGALALWNQILDKGLQTDVVMHNIL 586

Query: 299 GKMFGESGDYDGIRYVLQEMKSL-GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
                 +G  D    +L EMK      PN+V YNTL++   + G    A SL+  ++E+G
Sbjct: 587 IHGLCSAGKVDEASQLLSEMKEKNNCCPNVVTYNTLMDGFYETGCFDKAASLWMAILENG 646

Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
           L PD  +    IK         + ++L   M  +      I +N L+      G ++
Sbjct: 647 LVPDIISYNTRIKGLCSCNRTPEGVQLLNEMLASGIIPTAITWNILVRAVIKYGPIQ 703


>gi|226505250|ref|NP_001147833.1| GTP binding protein [Zea mays]
 gi|195614010|gb|ACG28835.1| GTP binding protein [Zea mays]
 gi|413952711|gb|AFW85360.1| GTP binding protein [Zea mays]
          Length = 547

 Score =  122 bits (307), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 95/369 (25%), Positives = 171/369 (46%), Gaps = 38/369 (10%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           FF W + Q  F      ++  +++L   +QF+L+  L   M    + L   T+  I+   
Sbjct: 147 FFRWAERQEGFSYTAEGFHNLIEALGKIKQFRLVWSLVETMRCRGL-LSKDTFKLIVRRY 205

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG-WKPD 291
            R     EA+E FE+M   GL  +   Y+ ++D  +KS +V++  ++Y+     G + PD
Sbjct: 206 ARARKVKEAVETFEKMSIFGLKTELSDYNWLIDTLSKSKQVKKAQAIYKEMKRKGKFVPD 265

Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
              ++VL + +G   D   ++ + QEM   G++P++V Y  L+ A  K+GK   A  +F 
Sbjct: 266 LKTYTVLMEGWGHEKDLLMVKTMYQEMIDAGIRPDVVAYGMLISAFCKSGKCDEAIKVFY 325

Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMD--------------- 396
           EM  SG  P       LI   G      +AL+ +E  +++ +PM+               
Sbjct: 326 EMEASGCMPSPHVYCMLINGLGSEERLDEALKYFEHYKKSGFPMEVPTCNAVVGAYCRAS 385

Query: 397 -----FIL---------------YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY 436
                F +               Y+ +L+        EEA  +F+ M + D C+P   +Y
Sbjct: 386 KFQHAFKMVDEMRKCKVGPNSRTYDVILHYLIKSQKFEEAYNIFQRMGI-DGCEPQLNTY 444

Query: 437 TAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496
           T M+ ++ S G VD A++++++M E GV   +   + LI  L    R+++    F   +D
Sbjct: 445 TMMVGMFCSNGRVDMALKVWKQMGEKGVLPCMHMFSALINGLCFENRLEEACVYFQEMLD 504

Query: 497 RGVKPDDRL 505
           +G++P  +L
Sbjct: 505 KGIRPPGQL 513



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 66/296 (22%), Positives = 130/296 (43%), Gaps = 3/296 (1%)

Query: 161 LNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIEL 220
           L+  K  +K+   +  +K +  F  +   Y V M+     +   +++ +  EM+   I  
Sbjct: 240 LSKSKQVKKAQAIYKEMKRKGKFVPDLKTYTVLMEGWGHEKDLLMVKTMYQEMIDAGIRP 299

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D + Y  +I+   +    DEAI+ F  M  +G MP    Y  +++      +++E L  +
Sbjct: 300 DVVAYGMLISAFCKSGKCDEAIKVFYEMEASGCMPSPHVYCMLINGLGSEERLDEALKYF 359

Query: 281 ERGVASGWKPD-PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
           E    SG+  + P   +V+G  +  +  +     ++ EM+   V PN   Y+ +L  + K
Sbjct: 360 EHYKKSGFPMEVPTCNAVVGA-YCRASKFQHAFKMVDEMRKCKVGPNSRTYDVILHYLIK 418

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
           + K   A ++F  M   G  P   T T ++ ++        AL++W++M E        +
Sbjct: 419 SQKFEEAYNIFQRMGIDGCEPQLNTYTMMVGMFCSNGRVDMALKVWKQMGEKGVLPCMHM 478

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIEL 455
           ++ L+N       +EEA   F++M L    +P    ++ +      GG +  A E+
Sbjct: 479 FSALINGLCFENRLEEACVYFQEM-LDKGIRPPGQLFSNLKEALVQGGRISLAQEV 533


>gi|302775071|ref|XP_002970952.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
 gi|300161663|gb|EFJ28278.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
          Length = 698

 Score =  122 bits (307), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 92/332 (27%), Positives = 147/332 (44%), Gaps = 32/332 (9%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           Y   +  L   ++ Q    L  ++ +N       TY+ ++    +    +EAI+   ++ 
Sbjct: 262 YTAIVNWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIV 321

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
             G  PD VTY++++D   K  +  E   L++   + G   D + ++ L +   ++G   
Sbjct: 322 DNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQTGKIP 381

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               V + M S G  P++V  +T+++ + KAG+ G A  +F  M   GL P+E   +ALI
Sbjct: 382 QASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALI 441

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
               KAR    ALE+  +M++     D I YN L++     G VE A   F++M L   C
Sbjct: 442 HGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEM-LEAGC 500

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIE------------------------------LFEEM 459
           KPD Y+Y  +++     GN D A                                LF EM
Sbjct: 501 KPDVYTYNILISGLCKAGNTDAACGVLDDMSSSRFVYSSLVDGLCKSGKLEGGCMLFHEM 560

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
              GVA N    T LI  L KA R+D+ V +F
Sbjct: 561 ERSGVA-NSQTRTRLIFHLCKANRVDEAVSLF 591



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 145/325 (44%), Gaps = 35/325 (10%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           ++Y  F  + S+ L  ++T+ Y   ++ L    +      +   M S+    D +T ST+
Sbjct: 347 EAYKLFKEMASRGL-ALDTVCYTALIRGLLQTGKIPQASSVYKTMTSHGCVPDVVTLSTM 405

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
           I    +      A+  F+ M   GL P+EV YSA++    K+ K++  L +  +   +  
Sbjct: 406 IDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFC 465

Query: 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP----- 343
            PD I +++L     +SGD +  R    EM   G +P++  YN L+  + KAG       
Sbjct: 466 TPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGLCKAGNTDAACG 525

Query: 344 -----------------GLARS--------LFDEMVESGLTPDEKTLTALIKIYGKARWA 378
                            GL +S        LF EM  SG+  + +T T LI    KA   
Sbjct: 526 VLDDMSSSRFVYSSLVDGLCKSGKLEGGCMLFHEMERSGVA-NSQTRTRLIFHLCKANRV 584

Query: 379 KDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTA 438
            +A+ L+  +R+   P  +  YN++++     G V E + ++++M  + + KPD  +Y A
Sbjct: 585 DEAVSLFNAIRKEGMPHPYA-YNSIISALIKSGKVNEGQAVYQEM--TRWWKPDRVTYNA 641

Query: 439 MLNIYGSGGNVDNAIELFEEMSELG 463
           +LN       +D A   + EM+  G
Sbjct: 642 LLNGMIGANRMDRAHYYYLEMTGRG 666



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/314 (22%), Positives = 144/314 (45%), Gaps = 4/314 (1%)

Query: 190 YNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERM 248
           +N+ +  L + G+    ++    E V   + +   T+S +I    +  +  +A    +  
Sbjct: 193 HNLVLHGLCKSGKVLAAMDHF--EAVRRSMPVSAATFSILINGLVKAGMMIQAHSLAQET 250

Query: 249 YKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY 308
              G   D  TY+AI++  AK+ K++E ++L E+  A+G  P    ++ L     + G  
Sbjct: 251 TTNGCTIDIHTYTAIVNWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRL 310

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
           +    +L+++   G  P++V Y +L++ +GK  +   A  LF EM   GL  D    TAL
Sbjct: 311 EEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTAL 370

Query: 369 IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428
           I+   +      A  +++ M  +    D +  +T+++  +  G +  A R+F+ M+    
Sbjct: 371 IRGLLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGL 430

Query: 429 CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLV 488
             P+   Y+A+++       +D A+E+  +M +     + +    LI  L K+  ++   
Sbjct: 431 -APNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAAR 489

Query: 489 RVFGVSIDRGVKPD 502
             F   ++ G KPD
Sbjct: 490 AFFDEMLEAGCKPD 503



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 85/323 (26%), Positives = 146/323 (45%), Gaps = 43/323 (13%)

Query: 217 EIELDNITYSTIITCAKRCNLFDEAIEWFERMY--KTGLMPDEVTYSAILDVYAKSGKVE 274
           EI  D +    I  C K  +L   A E F+ +   + G      T +A+LDV+A++ +  
Sbjct: 82  EISTDAVV--KIFQCLKDADL---AWELFQCLSSPRFGFQHSVHTGNALLDVFARTKRHR 136

Query: 275 EVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEM-KSLGVQPNLVVYNTL 333
           E  +L +  +A+ ++PD   ++VL   +  + + +    V++EM +  GV P+L  +N +
Sbjct: 137 EAGNLLKNELATIFRPDVETWNVLITGYCLAREPEEAFAVIREMEEDFGVAPSLKTHNLV 196

Query: 334 LEAMGKAGKP--------------------------GL--------ARSLFDEMVESGLT 359
           L  + K+GK                           GL        A SL  E   +G T
Sbjct: 197 LHGLCKSGKVLAAMDHFEAVRRSMPVSAATFSILINGLVKAGMMIQAHSLAQETTTNGCT 256

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
            D  T TA++    K +  ++A+ L E++  N        YN LLN    +G +EEA  L
Sbjct: 257 IDIHTYTAIVNWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDL 316

Query: 420 FEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479
              + + + C PD  +YT++++  G       A +LF+EM+  G+A++ +  T LI+ L 
Sbjct: 317 LRKI-VDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRGLL 375

Query: 480 KARRIDDLVRVFGVSIDRGVKPD 502
           +  +I     V+      G  PD
Sbjct: 376 QTGKIPQASSVYKTMTSHGCVPD 398



 Score = 49.7 bits (117), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 62/128 (48%), Gaps = 8/128 (6%)

Query: 213 MVSNEIELDNI----TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           M+ +E+E   +    T + +I    + N  DEA+  F  + K G MP    Y++I+    
Sbjct: 555 MLFHEMERSGVANSQTRTRLIFHLCKANRVDEAVSLFNAIRKEG-MPHPYAYNSIISALI 613

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAF-SVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
           KSGKV E  ++Y+  +   WKPD + + ++L  M G +   D   Y   EM   G  P +
Sbjct: 614 KSGKVNEGQAVYQE-MTRWWKPDRVTYNALLNGMIG-ANRMDRAHYYYLEMTGRGYVPPV 671

Query: 328 VVYNTLLE 335
            + + L +
Sbjct: 672 SILHKLAD 679


>gi|334184699|ref|NP_001189682.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|330253975|gb|AEC09069.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 613

 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 140/290 (48%), Gaps = 7/290 (2%)

Query: 255 PDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYV 314
           P+  TY+A+++ +A+ G  E+   ++E+    G +PD   ++ L + +  +G   G   +
Sbjct: 319 PNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEI 378

Query: 315 LQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK 374
              M+ +G +P+   YN +++A G+AG    A ++F+EM   G+ P  K+   L+  Y K
Sbjct: 379 FSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSK 438

Query: 375 ARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNY 434
           AR       + + M EN    D  + N++LN+   +G   + E++  +M+ +  C  D  
Sbjct: 439 ARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEME-NGPCTADIS 497

Query: 435 SYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVS 494
           +Y  ++NIYG  G ++   ELF E+ E     +V+  T  I    + +     + VF   
Sbjct: 498 TYNILINIYGKAGFLERIEELFVELKEKNFRPDVVTWTSRIGAYSRKKLYVKCLEVFEEM 557

Query: 495 IDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQA------NPKLVA 538
           ID G  PD      LLS  S  E  E V  V+  + +        PKL+A
Sbjct: 558 IDSGCAPDGGTAKVLLSACSSEEQVEQVTSVLRTMHKGVTVSSLVPKLMA 607



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 133/261 (50%), Gaps = 7/261 (2%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           +L  EM S++ + +  TY+ ++    R  L ++A E FE++ + GL PD   Y+A+++ Y
Sbjct: 307 KLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESY 366

Query: 268 AKSG---KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQ 324
           +++G      E+ SL +     G +PD  +++++   +G +G +     V +EMK LG+ 
Sbjct: 367 SRAGYPYGAAEIFSLMQH---MGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIA 423

Query: 325 PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384
           P +  +  LL A  KA       ++  EM E+G+ PD   L +++ +YG+        ++
Sbjct: 424 PTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKI 483

Query: 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYG 444
              M       D   YN L+N+    G +E  E LF ++K  ++ +PD  ++T+ +  Y 
Sbjct: 484 LAEMENGPCTADISTYNILINIYGKAGFLERIEELFVELKEKNF-RPDVVTWTSRIGAYS 542

Query: 445 SGGNVDNAIELFEEMSELGVA 465
                   +E+FEEM + G A
Sbjct: 543 RKKLYVKCLEVFEEMIDSGCA 563



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 146/337 (43%), Gaps = 51/337 (15%)

Query: 214 VSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKV 273
           VS ++ L+    S I+ C           EW  R  K+   PD + ++ ++D Y +  + 
Sbjct: 147 VSVQLRLNKKWDSIILVC-----------EWILR--KSSFQPDVICFNLLIDAYGQKFQY 193

Query: 274 EEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV---VY 330
           +E  SLY + + S + P    +++L K +  +G  +    VL EM++  V P  +   VY
Sbjct: 194 KEAESLYVQLLESRYVPTEDTYALLIKAYCMAGLIERAEVVLVEMQNHHVSPKTIGVTVY 253

Query: 331 NTLLEA-MGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMR 389
           N  +E  M + G    A  +F  M      P  +T   +I +YGKA  +  + +L+  MR
Sbjct: 254 NAYIEGLMKRKGNTEEAIDVFQRMKRDRCKPTTETYNLMINLYGKASKSYMSWKLYCEMR 313

Query: 390 ENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK--------------LSDY------- 428
            ++   +   Y  L+N  A  GL E+AE +FE ++              +  Y       
Sbjct: 314 SHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPY 373

Query: 429 -------------CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLI 475
                        C+PD  SY  M++ YG  G   +A  +FEEM  LG+A  +     L+
Sbjct: 374 GAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLL 433

Query: 476 QCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSV 512
               KAR +     +     + GV+PD  +   +L++
Sbjct: 434 SAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSMLNL 470



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 95/212 (44%), Gaps = 5/212 (2%)

Query: 324 QPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA-L 382
           QP+++ +N L++A G+  +   A SL+ +++ES   P E T   LIK Y  A   + A +
Sbjct: 174 QPDVICFNLLIDAYGQKFQYKEAESLYVQLLESRYVPTEDTYALLIKAYCMAGLIERAEV 233

Query: 383 ELWERMRENKWP--MDFILYNTLL-NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAM 439
            L E    +  P  +   +YN  +  +    G  EEA  +F+ MK  D CKP   +Y  M
Sbjct: 234 VLVEMQNHHVSPKTIGVTVYNAYIEGLMKRKGNTEEAIDVFQRMK-RDRCKPTTETYNLM 292

Query: 440 LNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGV 499
           +N+YG       + +L+ EM       N+   T L+    +    +    +F    + G+
Sbjct: 293 INLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGL 352

Query: 500 KPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ 531
           +PD  +   L+   S         ++ + +Q 
Sbjct: 353 EPDVYVYNALMESYSRAGYPYGAAEIFSLMQH 384


>gi|255540069|ref|XP_002511099.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550214|gb|EEF51701.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1151

 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 86/336 (25%), Positives = 156/336 (46%), Gaps = 35/336 (10%)

Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS 261
           + Q  E+   EM+ + I  +++  + +I    +     +A   F  M   G++PD  T+S
Sbjct: 562 EMQAAERSFIEMLDSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHS 621

Query: 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
            ++   +K+GK++E + ++   +  G  PD   ++ L     + GD      +  +M   
Sbjct: 622 VLIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKK 681

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
           G+ PN+V YN L+  + K G+   AR LFD + E GL  +  T + +I  Y K+    +A
Sbjct: 682 GINPNIVTYNALINGLCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEA 741

Query: 382 LELWERMRENKWPMDFILYNTLLNMCAD-----------IGLVE---------------- 414
            +L+  M+    P D  +Y  L++ C             +G+VE                
Sbjct: 742 FQLFHGMKLVGVPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEGIASTPAFNALIDGF 801

Query: 415 -------EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
                  EA +L EDM + ++  P++ +YT ++  + + GN+  A +LF EM +  V  N
Sbjct: 802 FKLGKLIEAYQLVEDM-VDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPN 860

Query: 468 VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
           V+  T L+    +  R  ++  +F   + RG+KPDD
Sbjct: 861 VLTYTSLLHGYNRIGRRSEMFSLFDEMVARGIKPDD 896



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 138/299 (46%), Gaps = 39/299 (13%)

Query: 242 IEWFERMYKT---GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
           +E F ++YK     ++PD  TY+ +++ Y + GKVEE   +       G  P+ + +SV+
Sbjct: 214 VELFWKVYKGMLGAIVPDVYTYTNLINAYCRVGKVEEGKHVLFDMEEKGCIPNLVTYSVV 273

Query: 299 GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
                 +GD D    + + M + G+ P+  +Y TL++   +  +    +S+ DEM   GL
Sbjct: 274 IAGLCRAGDVDEALELKRSMANKGLLPDNYIYATLIDGFCRQKRSTEGKSMLDEMYTMGL 333

Query: 359 TPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAER 418
            PD    TALI  + K      A ++ E M   K  ++   Y  L++    IG +E+AE 
Sbjct: 334 KPDHVAYTALINGFVKQSDIGGAFQVKEEMFARKIKLNTFTYYALIHGLCKIGDLEKAED 393

Query: 419 LFEDMKLSDYCKPDNYSYTAML--------------------------NIYGSG------ 446
           LF +M +    KPD  +Y  ++                          N Y  G      
Sbjct: 394 LFSEMTMMGI-KPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKENLTANAYMCGAIVNGL 452

Query: 447 ---GNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
              G++  A ELF+EM   G+  N++  T +++ L K  R ++ +++ GV  D+G+ PD
Sbjct: 453 CHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPD 511



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/280 (26%), Positives = 131/280 (46%), Gaps = 1/280 (0%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           +TYS +I    R    DEA+E    M   GL+PD   Y+ ++D + +  +  E  S+ + 
Sbjct: 268 VTYSVVIAGLCRAGDVDEALELKRSMANKGLLPDNYIYATLIDGFCRQKRSTEGKSMLDE 327

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
               G KPD +A++ L   F +  D  G   V +EM +  ++ N   Y  L+  + K G 
Sbjct: 328 MYTMGLKPDHVAYTALINGFVKQSDIGGAFQVKEEMFARKIKLNTFTYYALIHGLCKIGD 387

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
              A  LF EM   G+ PD +T   LI+ Y K +  + A EL   +++     +  +   
Sbjct: 388 LEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKENLTANAYMCGA 447

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
           ++N     G +  A  LF++M +S   KP+   YT ++      G  + AI++   M + 
Sbjct: 448 IVNGLCHCGDLTRANELFQEM-ISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQ 506

Query: 463 GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           G++ +V     +I    KA ++++        I +G+KP+
Sbjct: 507 GLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPN 546



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 97/403 (24%), Positives = 181/403 (44%), Gaps = 20/403 (4%)

Query: 108 QRQKRSTYSYNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTRENALLILNS---L 164
           ++ K +T++Y   +  L     K+ D +  E+ F   +T +  +P  +    ++     +
Sbjct: 366 RKIKLNTFTYYALIHGL----CKIGDLEKAEDLF-SEMTMMGIKPDIQTYNCLIEGYYKV 420

Query: 165 KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNIT 224
           +  +K+Y     IK +NL           +  L          +L  EM+S  ++ + + 
Sbjct: 421 QNMEKAYELLIEIKKENL-TANAYMCGAIVNGLCHCGDLTRANELFQEMISWGLKPNIVI 479

Query: 225 YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
           Y+TI+    +   F+EAI+    M   GL PD   Y+ ++  + K+GK+EE  S     +
Sbjct: 480 YTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMI 539

Query: 285 ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344
           A G KP+   +      +  +G+         EM   G+ PN V+   L++   K G   
Sbjct: 540 AKGLKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDSGIAPNDVICTDLIDGYCKDGNTT 599

Query: 345 LARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
            A + F  M++ G+ PD +T + LI    K    ++A+ ++  + +     D   Y +L+
Sbjct: 600 KAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLI 659

Query: 405 -NMCADIGLVEEAERLFEDMKLSDYCK----PDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
            N+C + G ++ A  L +DM     CK    P+  +Y A++N     G +  A ELF+ +
Sbjct: 660 SNLCKE-GDLKAAFELHDDM-----CKKGINPNIVTYNALINGLCKLGEIAKARELFDGI 713

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            E G+A N +  + +I    K+  + +  ++F      GV PD
Sbjct: 714 PEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPD 756



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 93/364 (25%), Positives = 149/364 (40%), Gaps = 45/364 (12%)

Query: 182 LFPMET-------IFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           LF ME        + Y+V +  L R G   + +E L   M +  +  DN  Y+T+I    
Sbjct: 255 LFDMEEKGCIPNLVTYSVVIAGLCRAGDVDEALE-LKRSMANKGLLPDNYIYATLIDGFC 313

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
           R     E     + MY  GL PD V Y+A+++ + K   +     + E   A   K +  
Sbjct: 314 RQKRSTEGKSMLDEMYTMGLKPDHVAYTALINGFVKQSDIGGAFQVKEEMFARKIKLNTF 373

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA------MGKA------- 340
            +  L     + GD +    +  EM  +G++P++  YN L+E       M KA       
Sbjct: 374 TYYALIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELLIEI 433

Query: 341 ----------------------GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWA 378
                                 G    A  LF EM+  GL P+    T ++K   K    
Sbjct: 434 KKENLTANAYMCGAIVNGLCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRF 493

Query: 379 KDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTA 438
           ++A+++   M++     D   YNT++      G +EE +    +M ++   KP+ Y+Y A
Sbjct: 494 EEAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEM-IAKGLKPNVYTYGA 552

Query: 439 MLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRG 498
            ++ Y   G +  A   F EM + G+A N + CT LI    K          F   +D+G
Sbjct: 553 FIHGYCRAGEMQAAERSFIEMLDSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQG 612

Query: 499 VKPD 502
           V PD
Sbjct: 613 VLPD 616



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 143/298 (47%), Gaps = 7/298 (2%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           K++  F  +  Q + P +   ++V +  L    + Q    + +E++   +  D  TY+++
Sbjct: 600 KAFAKFRCMLDQGVLP-DVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTSL 658

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
           I+   +      A E  + M K G+ P+ VTY+A+++   K G++ +   L++     G 
Sbjct: 659 ISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALINGLCKLGEIAKARELFDGIPEKGL 718

Query: 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348
             + + +S +   + +S +      +   MK +GV P+  VY  L++   KAG    A S
Sbjct: 719 ARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCALIDGCCKAGNTEKALS 778

Query: 349 LFDEMVESGL--TPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
           LF  MVE G+  TP      ALI  + K     +A +L E M +N    + + Y  L+  
Sbjct: 779 LFLGMVEEGIASTP---AFNALIDGFFKLGKLIEAYQLVEDMVDNHITPNHVTYTILIEY 835

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
              +G ++EAE+LF +M+  +   P+  +YT++L+ Y   G       LF+EM   G+
Sbjct: 836 HCTVGNIKEAEQLFMEMQKRNV-MPNVLTYTSLLHGYNRIGRRSEMFSLFDEMVARGI 892



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 97/192 (50%), Gaps = 2/192 (1%)

Query: 199 FGRQFQLIE--QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPD 256
           F +  +LIE  QL  +MV N I  +++TY+ +I          EA + F  M K  +MP+
Sbjct: 801 FFKLGKLIEAYQLVEDMVDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPN 860

Query: 257 EVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQ 316
            +TY+++L  Y + G+  E+ SL++  VA G KPD +A+SV+     + G++     ++ 
Sbjct: 861 VLTYTSLLHGYNRIGRRSEMFSLFDEMVARGIKPDDLAWSVMVDAHLKEGNWIKALKLVD 920

Query: 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
           +M S GV     +Y  L++A+ K         + DE+ + G      T   L+  + +A 
Sbjct: 921 DMLSEGVNVCKNLYTILIDALCKHNNLSEVLKVLDEVEKQGSKLSLATCGTLVCCFHRAG 980

Query: 377 WAKDALELWERM 388
              +AL + E M
Sbjct: 981 RTDEALRVLESM 992



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 78/376 (20%), Positives = 155/376 (41%), Gaps = 26/376 (6%)

Query: 141 FLRAITEIPHQPTRENALLIL--NSLKFWQKSYFFFNWIKSQNLFPME----TIFYNVTM 194
           FL   + +P++   +   L++  N +   ++ + FFNW+ S+ +F       +I   +  
Sbjct: 59  FLIESSPLPNKLNPDVVFLVIKQNQVIDPKRLHGFFNWVNSRTVFSQNLSTFSILSLILC 118

Query: 195 KSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLM 254
            S  FG    ++E++                  I T      + D  I+ ++ +  +   
Sbjct: 119 NSGLFGNAANVLERM------------------IDTRNPHVKILDSIIKCYKEINGSSSS 160

Query: 255 PDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYV 314
              V +  ++D+Y K G + E +S++     + +       + L K   +    +    V
Sbjct: 161 SSVVVFEILIDIYRKKGFLNEAVSVFLGAKTNEFIVGLACCNSLSKDLLKGNRVELFWKV 220

Query: 315 LQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK 374
            + M    + P++  Y  L+ A  + GK    + +  +M E G  P+  T + +I    +
Sbjct: 221 YKGMLG-AIVPDVYTYTNLINAYCRVGKVEEGKHVLFDMEEKGCIPNLVTYSVVIAGLCR 279

Query: 375 ARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNY 434
           A    +ALEL   M       D  +Y TL++         E + + ++M      KPD+ 
Sbjct: 280 AGDVDEALELKRSMANKGLLPDNYIYATLIDGFCRQKRSTEGKSMLDEMYTMGL-KPDHV 338

Query: 435 SYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVS 494
           +YTA++N +    ++  A ++ EEM    + +N      LI  L K   ++    +F   
Sbjct: 339 AYTALINGFVKQSDIGGAFQVKEEMFARKIKLNTFTYYALIHGLCKIGDLEKAEDLFSEM 398

Query: 495 IDRGVKPDDRLCGCLL 510
              G+KPD +   CL+
Sbjct: 399 TMMGIKPDIQTYNCLI 414



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 53/252 (21%), Positives = 98/252 (38%), Gaps = 71/252 (28%)

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           EA +  E M    + P+ VTY+ +++ +   G ++E   L+                   
Sbjct: 809 EAYQLVEDMVDNHITPNHVTYTILIEYHCTVGNIKEAEQLF------------------- 849

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
                            EM+   V PN++ Y +LL    + G+     SLFDEMV  G+ 
Sbjct: 850 ----------------MEMQKRNVMPNVLTYTSLLHGYNRIGRRSEMFSLFDEMVARGIK 893

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
           PD+   + ++          DA      ++E  W                     +A +L
Sbjct: 894 PDDLAWSVMV----------DA-----HLKEGNWI--------------------KALKL 918

Query: 420 FEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479
            +DM LS+        YT +++      N+   +++ +E+ + G  +++  C  L+ C  
Sbjct: 919 VDDM-LSEGVNVCKNLYTILIDALCKHNNLSEVLKVLDEVEKQGSKLSLATCGTLVCCFH 977

Query: 480 KARRIDDLVRVF 491
           +A R D+ +RV 
Sbjct: 978 RAGRTDEALRVL 989



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 70/152 (46%)

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
           EQL  EM    +  + +TY++++    R     E    F+ M   G+ PD++ +S ++D 
Sbjct: 846 EQLFMEMQKRNVMPNVLTYTSLLHGYNRIGRRSEMFSLFDEMVARGIKPDDLAWSVMVDA 905

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
           + K G   + L L +  ++ G       +++L     +  +   +  VL E++  G + +
Sbjct: 906 HLKEGNWIKALKLVDDMLSEGVNVCKNLYTILIDALCKHNNLSEVLKVLDEVEKQGSKLS 965

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
           L    TL+    +AG+   A  + + MV S L
Sbjct: 966 LATCGTLVCCFHRAGRTDEALRVLESMVRSFL 997


>gi|357115347|ref|XP_003559450.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Brachypodium distachyon]
          Length = 1102

 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 119/479 (24%), Positives = 217/479 (45%), Gaps = 38/479 (7%)

Query: 152 PTRENALLILNSLKFWQKSYFF------------FNWIKSQNLFPMETIFYNVTMKSLRF 199
           P  + A ++LNS  +    YF             +  + +  + P     Y+V M  L F
Sbjct: 171 PMMKEAGIVLNSYTYNGLIYFLVKSGYDREAMEVYKVMATDGIVP-SVRTYSVLM--LAF 227

Query: 200 G-RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEV 258
           G R  + +  L  EM  + ++ +  +Y+  I    +   F+EA +  ++M   G  PD V
Sbjct: 228 GKRDVETVVWLLREMEDHGVKPNVYSYTICIRVLGQAGRFEEAYKILQKMEDEGCKPDVV 287

Query: 259 TYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEM 318
           T + ++ +   +G+V +   ++ +  AS  KPD + +  L    G++GD   +  +   M
Sbjct: 288 TNTVLIQILCDAGRVSDAKDVFWKMKASDQKPDRVTYITLLDKCGDNGDSRSVIEIWNAM 347

Query: 319 KSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWA 378
           K+ G   N+V Y  +++A+ + G+   A  +FD+M + G+ P + +  +LI  + KA   
Sbjct: 348 KADGYNDNVVAYTAVVDALCQVGRVDEASDVFDQMKQKGIEPQQYSYNSLISGFLKADRL 407

Query: 379 KDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTA 438
             ALEL+  M  +    +   Y   +N     G   +A + +E MK S    PD  +  A
Sbjct: 408 NHALELFNHMNIHGPTPNGYTYVLFINYYGKSGESLKAIKRYELMK-SKGIVPDVVAGNA 466

Query: 439 MLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRG 498
           +L      G +  A  +F E+  +GV  + +  T +I+C  KA   D+ ++VF   I+  
Sbjct: 467 VLYSLAKSGRLGMAKRVFHELKSIGVCPDNITYTMMIKCCSKASNADEAMKVFSEMIETR 526

Query: 499 VKPDDRLCGCLLSVVSLCETSEDVG------KVITCLQQAN--PKLVAFLNLIEDNSTGF 550
             PD      +L+V SL +T    G      K+   L++ N  P    +  L+     G 
Sbjct: 527 CVPD------VLAVNSLIDTLYKAGRGNEAWKIFHELKEMNLDPTDCTYNTLLA--GLGR 578

Query: 551 ENIKEEFRNVIKDTEVDARRPFC---NCLID-ICRNRNLNERAHELLYLGTLYGLYPGL 605
           E   +E  +++++   ++  P     N ++D +C+N  +N  A  +LY  T+ G  P L
Sbjct: 579 EGKVKEVMHLLEEMNSNSYPPNLITYNTVLDCLCKNGEVN-YALGMLYNMTMKGCMPDL 636



 Score =  112 bits (280), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 86/318 (27%), Positives = 140/318 (44%), Gaps = 1/318 (0%)

Query: 185  METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEW 244
            ++T  YN  +  L       + E L +EM     + D  TY+ I+    +    ++ ++ 
Sbjct: 774  LKTGSYNALICGLVDENLIDVAEGLFSEMKRLGCDPDEFTYNLILDAMGKSMRIEDMLKV 833

Query: 245  FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
             + M+  G     VTY+ I+    KS  + E + LY + ++ G+ P P  +  L     +
Sbjct: 834  QKEMHCKGYESTYVTYNTIISGLVKSKMLYEAMDLYYKLMSEGFSPTPCTYGPLLDGLLK 893

Query: 305  SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
             G  +    +  EM   G +PN  +YN LL     AG       LF  MV+ G+ PD K+
Sbjct: 894  DGKIEDAEDLFDEMLDYGCKPNRAIYNILLNGYRLAGNTEKVCELFQNMVDQGINPDIKS 953

Query: 365  LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
             T LI     A    D+L  + ++ E     D I YN L++     G +EEA  LF DM+
Sbjct: 954  YTVLIGALCTAGRLNDSLSYFRQLTELGLEPDLITYNLLIHGLGRSGRLEEAVSLFNDME 1013

Query: 425  LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484
             S    P+ Y+Y +++   G  G    A +++EE+ + G   NV     LI     +   
Sbjct: 1014 KSG-IAPNLYTYNSLILYLGKEGKAAEAGKMYEELLKNGWKPNVFTYNALIGGYSVSGST 1072

Query: 485  DDLVRVFGVSIDRGVKPD 502
            D+    +G  I  G  P+
Sbjct: 1073 DNAFASYGQMIVGGCPPN 1090



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 144/305 (47%), Gaps = 5/305 (1%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
           ++M    IE    +Y+++I+   + +  + A+E F  M   G  P+  TY   ++ Y KS
Sbjct: 380 DQMKQKGIEPQQYSYNSLISGFLKADRLNHALELFNHMNIHGPTPNGYTYVLFINYYGKS 439

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
           G+  + +  YE   + G  PD +A + +     +SG     + V  E+KS+GV P+ + Y
Sbjct: 440 GESLKAIKRYELMKSKGIVPDVVAGNAVLYSLAKSGRLGMAKRVFHELKSIGVCPDNITY 499

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
             +++   KA     A  +F EM+E+   PD   + +LI    KA    +A +++  ++E
Sbjct: 500 TMMIKCCSKASNADEAMKVFSEMIETRCVPDVLAVNSLIDTLYKAGRGNEAWKIFHELKE 559

Query: 391 -NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNV 449
            N  P D   YNTLL      G V+E   L E+M  + Y  P+  +Y  +L+     G V
Sbjct: 560 MNLDPTD-CTYNTLLAGLGREGKVKEVMHLLEEMNSNSY-PPNLITYNTVLDCLCKNGEV 617

Query: 450 DNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD-DRLCGC 508
           + A+ +   M+  G   ++      +  L K  R+ +  R+F   + + + PD   LC  
Sbjct: 618 NYALGMLYNMTMKGCMPDLSSYNTALHGLVKEDRLTEAFRIF-CQMKKVLAPDYTTLCTI 676

Query: 509 LLSVV 513
           L S V
Sbjct: 677 LPSFV 681



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 131/296 (44%), Gaps = 36/296 (12%)

Query: 207  EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
             +L  +  S  + L   +Y+ +I      NL D A   F  M + G  PDE TY+ ILD 
Sbjct: 761  HELVKKFESLGVSLKTGSYNALICGLVDENLIDVAEGLFSEMKRLGCDPDEFTYNLILDA 820

Query: 267  YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
              KS ++E++L                                    V +EM   G +  
Sbjct: 821  MGKSMRIEDMLK-----------------------------------VQKEMHCKGYEST 845

Query: 327  LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
             V YNT++  + K+     A  L+ +++  G +P   T   L+    K    +DA +L++
Sbjct: 846  YVTYNTIISGLVKSKMLYEAMDLYYKLMSEGFSPTPCTYGPLLDGLLKDGKIEDAEDLFD 905

Query: 387  RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
             M +     +  +YN LLN     G  E+   LF++M +     PD  SYT ++    + 
Sbjct: 906  EMLDYGCKPNRAIYNILLNGYRLAGNTEKVCELFQNM-VDQGINPDIKSYTVLIGALCTA 964

Query: 447  GNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            G +++++  F +++ELG+  +++    LI  LG++ R+++ V +F      G+ P+
Sbjct: 965  GRLNDSLSYFRQLTELGLEPDLITYNLLIHGLGRSGRLEEAVSLFNDMEKSGIAPN 1020



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/260 (22%), Positives = 118/260 (45%), Gaps = 19/260 (7%)

Query: 165  KFWQKSYFFFNWI-----KSQNLFPMETIFYNVT--------------MKSLRFGRQFQL 205
            K ++ +Y  +N I     KS+ L+    ++Y +               +  L    + + 
Sbjct: 840  KGYESTYVTYNTIISGLVKSKMLYEAMDLYYKLMSEGFSPTPCTYGPLLDGLLKDGKIED 899

Query: 206  IEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
             E L +EM+    + +   Y+ ++   +     ++  E F+ M   G+ PD  +Y+ ++ 
Sbjct: 900  AEDLFDEMLDYGCKPNRAIYNILLNGYRLAGNTEKVCELFQNMVDQGINPDIKSYTVLIG 959

Query: 266  VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325
                +G++ + LS + +    G +PD I +++L    G SG  +    +  +M+  G+ P
Sbjct: 960  ALCTAGRLNDSLSYFRQLTELGLEPDLITYNLLIHGLGRSGRLEEAVSLFNDMEKSGIAP 1019

Query: 326  NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
            NL  YN+L+  +GK GK   A  +++E++++G  P+  T  ALI  Y  +    +A   +
Sbjct: 1020 NLYTYNSLILYLGKEGKAAEAGKMYEELLKNGWKPNVFTYNALIGGYSVSGSTDNAFASY 1079

Query: 386  ERMRENKWPMDFILYNTLLN 405
             +M     P +   Y  L N
Sbjct: 1080 GQMIVGGCPPNSSTYMQLPN 1099



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 92/411 (22%), Positives = 176/411 (42%), Gaps = 45/411 (10%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F+ +K  NL P +   YN  +  L    + + +  L  EM SN    + ITY+T++ C 
Sbjct: 553 IFHELKEMNLDPTDCT-YNTLLAGLGREGKVKEVMHLLEEMNSNSYPPNLITYNTVLDCL 611

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +    + A+     M   G MPD  +Y+  L    K  ++ E   ++ + +     PD 
Sbjct: 612 CKNGEVNYALGMLYNMTMKGCMPDLSSYNTALHGLVKEDRLTEAFRIFCQ-MKKVLAPDY 670

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQE-MKSLGVQPNLVVYNTLLEAMGKAGKPGLARSL-F 350
                +   F ++G  +   + L+E +   G + +   +++L+E + K  + G+ +S+ F
Sbjct: 671 TTLCTILPSFVKNGLMNEALHTLKEYILQPGSKADRSSFHSLMEGILK--RAGMEKSIEF 728

Query: 351 DEMVE-SGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCAD 409
            E +  S +  D+  L+ LI+   K++ A +A EL ++       +    YN L+    D
Sbjct: 729 AENIALSRILLDDFFLSPLIRHLCKSKKALEAHELVKKFESLGVSLKTGSYNALICGLVD 788

Query: 410 IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVM 469
             L++ AE LF +MK    C PD ++Y  +L+  G    +++ +++ +EM   G     +
Sbjct: 789 ENLIDVAEGLFSEMKRLG-CDPDEFTYNLILDAMGKSMRIEDMLKVQKEMHCKGYESTYV 847

Query: 470 GCTCLIQCLGKAR-----------------------------------RIDDLVRVFGVS 494
               +I  L K++                                   +I+D   +F   
Sbjct: 848 TYNTIISGLVKSKMLYEAMDLYYKLMSEGFSPTPCTYGPLLDGLLKDGKIEDAEDLFDEM 907

Query: 495 IDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCL--QQANPKLVAFLNLI 543
           +D G KP+  +   LL+   L   +E V ++   +  Q  NP + ++  LI
Sbjct: 908 LDYGCKPNRAIYNILLNGYRLAGNTEKVCELFQNMVDQGINPDIKSYTVLI 958



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 85/387 (21%), Positives = 160/387 (41%), Gaps = 72/387 (18%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           +  +KS+ + P + +  N  + SL    +  + +++ +E+ S  +  DNITY+ +I C  
Sbjct: 449 YELMKSKGIVP-DVVAGNAVLYSLAKSGRLGMAKRVFHELKSIGVCPDNITYTMMIKCCS 507

Query: 234 RCNLFDEAIEWFERMYKTGLMPD-----------------------------------EV 258
           + +  DEA++ F  M +T  +PD                                   + 
Sbjct: 508 KASNADEAMKVFSEMIETRCVPDVLAVNSLIDTLYKAGRGNEAWKIFHELKEMNLDPTDC 567

Query: 259 TYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEM 318
           TY+ +L    + GKV+EV+ L E   ++ + P+ I ++ +     ++G+ +    +L  M
Sbjct: 568 TYNTLLAGLGREGKVKEVMHLLEEMNSNSYPPNLITYNTVLDCLCKNGEVNYALGMLYNM 627

Query: 319 KSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWA 378
              G  P+L  YNT L  + K  +   A  +F +M +  L PD  TL  ++  + K    
Sbjct: 628 TMKGCMPDLSSYNTALHGLVKEDRLTEAFRIFCQM-KKVLAPDYTTLCTILPSFVKNGLM 686

Query: 379 KDALE-LWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS-----DY---- 428
            +AL  L E + +     D   +++L+        +E++    E++ LS     D+    
Sbjct: 687 NEALHTLKEYILQPGSKADRSSFHSLMEGILKRAGMEKSIEFAENIALSRILLDDFFLSP 746

Query: 429 -----CKPDNY--------------------SYTAMLNIYGSGGNVDNAIELFEEMSELG 463
                CK                        SY A++        +D A  LF EM  LG
Sbjct: 747 LIRHLCKSKKALEAHELVKKFESLGVSLKTGSYNALICGLVDENLIDVAEGLFSEMKRLG 806

Query: 464 VAINVMGCTCLIQCLGKARRIDDLVRV 490
              +      ++  +GK+ RI+D+++V
Sbjct: 807 CDPDEFTYNLILDAMGKSMRIEDMLKV 833



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/273 (21%), Positives = 113/273 (41%), Gaps = 35/273 (12%)

Query: 263 ILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG 322
           +L++    G+V ++  +++       K +   F  + +  G  G        L  MK  G
Sbjct: 118 MLELMRAHGRVRDMAQVFDLMQRQIVKANVGTFLTIFRSLGMEGGLRSAPVALPMMKEAG 177

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI------------- 369
           +  N   YN L+  + K+G    A  ++  M   G+ P  +T + L+             
Sbjct: 178 IVLNSYTYNGLIYFLVKSGYDREAMEVYKVMATDGIVPSVRTYSVLMLAFGKRDVETVVW 237

Query: 370 ---------------------KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCA 408
                                ++ G+A   ++A ++ ++M +     D +    L+ +  
Sbjct: 238 LLREMEDHGVKPNVYSYTICIRVLGQAGRFEEAYKILQKMEDEGCKPDVVTNTVLIQILC 297

Query: 409 DIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINV 468
           D G V +A+ +F  MK SD  KPD  +Y  +L+  G  G+  + IE++  M   G   NV
Sbjct: 298 DAGRVSDAKDVFWKMKASDQ-KPDRVTYITLLDKCGDNGDSRSVIEIWNAMKADGYNDNV 356

Query: 469 MGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
           +  T ++  L +  R+D+   VF     +G++P
Sbjct: 357 VAYTAVVDALCQVGRVDEASDVFDQMKQKGIEP 389



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 83/192 (43%), Gaps = 6/192 (3%)

Query: 315 LQEMKSLGVQPNLV----VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK 370
           LQ  KS+  QP +V      N +LE M   G+      +FD M    +  +  T   + +
Sbjct: 96  LQLFKSVAQQPRIVHTTESCNYMLELMRAHGRVRDMAQVFDLMQRQIVKANVGTFLTIFR 155

Query: 371 IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCK 430
             G     + A      M+E    ++   YN L+      G   EA  +++ M  +D   
Sbjct: 156 SLGMEGGLRSAPVALPMMKEAGIVLNSYTYNGLIYFLVKSGYDREAMEVYKVMA-TDGIV 214

Query: 431 PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRV 490
           P   +Y+ ++  +G   +V+  + L  EM + GV  NV   T  I+ LG+A R ++  ++
Sbjct: 215 PSVRTYSVLMLAFGK-RDVETVVWLLREMEDHGVKPNVYSYTICIRVLGQAGRFEEAYKI 273

Query: 491 FGVSIDRGVKPD 502
                D G KPD
Sbjct: 274 LQKMEDEGCKPD 285


>gi|224058846|ref|XP_002299640.1| predicted protein [Populus trichocarpa]
 gi|222846898|gb|EEE84445.1| predicted protein [Populus trichocarpa]
          Length = 609

 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 142/296 (47%), Gaps = 14/296 (4%)

Query: 199 FGRQFQLIE--QLANEMVSNEIELDNITYSTIITCAKRCNLFD------EAIEWFERMYK 250
           FG+  +L +  +L ++M S +   + +TY+T+I       LF+      EA  WFE+M  
Sbjct: 316 FGKAGRLEDALKLFDQMRSLKCAPNVVTYNTVIKA-----LFESKAPASEAASWFEKMKA 370

Query: 251 TGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDG 310
            G+ P   TYS ++D + K+ +VE+ L L E     G+ P P A+  L    G++  Y+ 
Sbjct: 371 NGVTPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEA 430

Query: 311 IRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK 370
              +  E+K    + +  +Y  +++ +GK G+P  A  LF+EM + G  PD     AL+ 
Sbjct: 431 ANELFLELKENCGRSSARIYAVMIKNLGKCGRPSEAVDLFNEMKKIGCNPDVYAYNALMS 490

Query: 371 IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCK 430
              +A   ++A      M EN    D   +N +LN  A  G  E+A  +F  MK S   K
Sbjct: 491 GLVRAGMIEEAFSALRTMEENGCTPDLNSHNIILNGLARTGRPEQATEMFMKMKDS-LIK 549

Query: 431 PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
           PD  SY  +L      G  + A +L  EM   G   + +  + +++ +GK    D+
Sbjct: 550 PDAVSYNTILGSLSRSGMFEEAAKLMREMGSRGFEYDHITYSSILEAVGKVDEDDE 605



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/270 (29%), Positives = 139/270 (51%), Gaps = 4/270 (1%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTG-LMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           TY+++I    +    ++  E +  M   G   PD +TYS ++  + K G+ +  + L++ 
Sbjct: 168 TYNSMILMLMQEGHHEKIHELYHEMCNEGDCFPDTMTYSVLVSAFVKLGRDDYAIRLFDE 227

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
             A+G  P    ++ L  ++ +SGD   +  V QEMK  G  P +  Y  L++ +GK+G+
Sbjct: 228 MKANGLHPTAKIYTTLLAIYFKSGDEKALGLV-QEMKDKGCAPTVFTYTELIKGLGKSGR 286

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
              A S+F  M++ G  PD   +  LI I+GKA   +DAL+L+++MR  K   + + YNT
Sbjct: 287 VEDAYSVFLNMLKDGCKPDVVLINNLINIFGKAGRLEDALKLFDQMRSLKCAPNVVTYNT 346

Query: 403 LLN-MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461
           ++  +        EA   FE MK ++   P +++Y+ +++ +     V+ A+ L EEM E
Sbjct: 347 VIKALFESKAPASEAASWFEKMK-ANGVTPSSFTYSILIDGFCKTNRVEKALLLLEEMDE 405

Query: 462 LGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
            G          LI  LGKA+R +    +F
Sbjct: 406 KGFPPCPAAYCSLINALGKAKRYEAANELF 435



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 78/267 (29%), Positives = 132/267 (49%), Gaps = 4/267 (1%)

Query: 218 IELDNITYSTIITCAKRCNLFDEAIEWFERMYKT-GLMPDEVTYSAILDVYAKSGKVEEV 276
            E D  TY  +I C   C LF E  +  + M ++   +      S ++ +  K+  V + 
Sbjct: 91  FEHDLTTYMPLIRCLDDCGLFGEMWKMIQEMVRSPTCVIGPADLSEVVKILGKAKMVNKA 150

Query: 277 LSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG-VQPNLVVYNTLLE 335
           LS++ +  +   KP    ++ +  M  + G ++ I  +  EM + G   P+ + Y+ L+ 
Sbjct: 151 LSVFYQIKSRKCKPTASTYNSMILMLMQEGHHEKIHELYHEMCNEGDCFPDTMTYSVLVS 210

Query: 336 AMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPM 395
           A  K G+   A  LFDEM  +GL P  K  T L+ IY K+   K AL L + M++     
Sbjct: 211 AFVKLGRDDYAIRLFDEMKANGLHPTAKIYTTLLAIYFKSGDEK-ALGLVQEMKDKGCAP 269

Query: 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIEL 455
               Y  L+      G VE+A  +F +M L D CKPD      ++NI+G  G +++A++L
Sbjct: 270 TVFTYTELIKGLGKSGRVEDAYSVFLNM-LKDGCKPDVVLINNLINIFGKAGRLEDALKL 328

Query: 456 FEEMSELGVAINVMGCTCLIQCLGKAR 482
           F++M  L  A NV+    +I+ L +++
Sbjct: 329 FDQMRSLKCAPNVVTYNTVIKALFESK 355



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 92/401 (22%), Positives = 171/401 (42%), Gaps = 15/401 (3%)

Query: 138 EEAFLRAITEIPHQPTREN---------ALLILNSLKFWQKSYF--FFNWIKSQNLFPME 186
           +E     I E+ H+   E          ++L+   +K  +  Y    F+ +K+  L P  
Sbjct: 178 QEGHHEKIHELYHEMCNEGDCFPDTMTYSVLVSAFVKLGRDDYAIRLFDEMKANGLHPTA 237

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
            I+   T+ ++ F    +    L  EM          TY+ +I    +    ++A   F 
Sbjct: 238 KIY--TTLLAIYFKSGDEKALGLVQEMKDKGCAPTVFTYTELIKGLGKSGRVEDAYSVFL 295

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAF-SVLGKMFGES 305
            M K G  PD V  + +++++ K+G++E+ L L+++  +    P+ + + +V+  +F   
Sbjct: 296 NMLKDGCKPDVVLINNLINIFGKAGRLEDALKLFDQMRSLKCAPNVVTYNTVIKALFESK 355

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
                     ++MK+ GV P+   Y+ L++   K  +   A  L +EM E G  P     
Sbjct: 356 APASEAASWFEKMKANGVTPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAY 415

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
            +LI   GKA+  + A EL+  ++EN       +Y  ++      G   EA  LF +MK 
Sbjct: 416 CSLINALGKAKRYEAANELFLELKENCGRSSARIYAVMIKNLGKCGRPSEAVDLFNEMKK 475

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
              C PD Y+Y A+++     G ++ A      M E G   ++     ++  L +  R +
Sbjct: 476 IG-CNPDVYAYNALMSGLVRAGMIEEAFSALRTMEENGCTPDLNSHNIILNGLARTGRPE 534

Query: 486 DLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
               +F    D  +KPD      +L  +S     E+  K++
Sbjct: 535 QATEMFMKMKDSLIKPDAVSYNTILGSLSRSGMFEEAAKLM 575



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 64/265 (24%), Positives = 110/265 (41%), Gaps = 41/265 (15%)

Query: 319 KSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG---LTPDEKTLTALIKIYGKA 375
           K    + +L  Y  L+  +   G  G    +  EMV S    + P +  L+ ++KI GKA
Sbjct: 87  KRRNFEHDLTTYMPLIRCLDDCGLFGEMWKMIQEMVRSPTCVIGPAD--LSEVVKILGKA 144

Query: 376 RWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYS 435
           +    AL ++ +++  K       YN+++ M    G  E+   L+ +M     C PD  +
Sbjct: 145 KMVNKALSVFYQIKSRKCKPTASTYNSMILMLMQEGHHEKIHELYHEMCNEGDCFPDTMT 204

Query: 436 YTAMLNIYGSGGNVDNAIELF----------------------------------EEMSE 461
           Y+ +++ +   G  D AI LF                                  +EM +
Sbjct: 205 YSVLVSAFVKLGRDDYAIRLFDEMKANGLHPTAKIYTTLLAIYFKSGDEKALGLVQEMKD 264

Query: 462 LGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSED 521
            G A  V   T LI+ LGK+ R++D   VF   +  G KPD  L   L+++       ED
Sbjct: 265 KGCAPTVFTYTELIKGLGKSGRVEDAYSVFLNMLKDGCKPDVVLINNLINIFGKAGRLED 324

Query: 522 VGKVITCLQ--QANPKLVAFLNLIE 544
             K+   ++  +  P +V +  +I+
Sbjct: 325 ALKLFDQMRSLKCAPNVVTYNTVIK 349



 Score = 44.3 bits (103), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 5/87 (5%)

Query: 190 YNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERM 248
           +N+ +  L R GR  Q  E    +M  + I+ D ++Y+TI+    R  +F+EA +    M
Sbjct: 520 HNIILNGLARTGRPEQATEMFM-KMKDSLIKPDAVSYNTILGSLSRSGMFEEAAKLMREM 578

Query: 249 YKTGLMPDEVTYSAILDVYAKSGKVEE 275
              G   D +TYS+IL+     GKV+E
Sbjct: 579 GSRGFEYDHITYSSILEAV---GKVDE 602


>gi|255553861|ref|XP_002517971.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542953|gb|EEF44489.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1029

 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 144/293 (49%), Gaps = 2/293 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D + Y+ +I    +  L+++A   F  M   G  PDE TY++++ +++ +  +++   L 
Sbjct: 551 DILEYNVMIKAYGKGKLYEKAFTLFRSMRHHGTWPDECTYNSLIQMFSGADLMDQARDLL 610

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
                 G+KP    FS +   +   G       V QEM  +GV+PN VVY  ++    + 
Sbjct: 611 TEMQGVGFKPQCATFSSIIACYARLGQLSDAAGVYQEMVKVGVKPNEVVYGAIINGYAEE 670

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G    A   F  M E G++ ++  LT+LIK+Y K      A +L+++M   +   D I  
Sbjct: 671 GNVKEALKYFHMMEEYGISANQIVLTSLIKVYSKLGCFDSAKQLYQKMMCLEGGPDIIAS 730

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           N+++++ AD+G++ EAE +F +++  +    D  SY  M+ +Y   G +D AI++ EEM 
Sbjct: 731 NSMISLYADLGMISEAELVFNNLR--EKGSADGVSYATMMYLYKGMGMLDEAIDVAEEMK 788

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVV 513
             G+  + +    ++ C     ++ +   +    I + + PD      L +V+
Sbjct: 789 LSGLLRDSVSYNKVMTCYATNGQLLECGELLHEMIKKKLFPDGGTFKILFTVL 841



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 128/270 (47%), Gaps = 2/270 (0%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YNV +K+   G+ ++    L   M  +    D  TY+++I      +L D+A +    M 
Sbjct: 555 YNVMIKAYGKGKLYEKAFTLFRSMRHHGTWPDECTYNSLIQMFSGADLMDQARDLLTEMQ 614

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
             G  P   T+S+I+  YA+ G++ +   +Y+  V  G KP+ + +  +   + E G+  
Sbjct: 615 GVGFKPQCATFSSIIACYARLGQLSDAAGVYQEMVKVGVKPNEVVYGAIINGYAEEGNVK 674

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
                   M+  G+  N +V  +L++   K G    A+ L+ +M+     PD     ++I
Sbjct: 675 EALKYFHMMEEYGISANQIVLTSLIKVYSKLGCFDSAKQLYQKMMCLEGGPDIIASNSMI 734

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
            +Y       +A  ++  +RE K   D + Y T++ +   +G+++EA  + E+MKLS   
Sbjct: 735 SLYADLGMISEAELVFNNLRE-KGSADGVSYATMMYLYKGMGMLDEAIDVAEEMKLSGLL 793

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           + D+ SY  ++  Y + G +    EL  EM
Sbjct: 794 R-DSVSYNKVMTCYATNGQLLECGELLHEM 822



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 78/329 (23%), Positives = 143/329 (43%), Gaps = 61/329 (18%)

Query: 159 LILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEI 218
           +IL   + W++    F + KS+  +    I YN+ +++L   +++  + +   EM  + +
Sbjct: 153 VILKEQRNWERMVRVFEFFKSRKDYVPNVIHYNIVLRALGRAQKWDDLRRCWIEMAKSGV 212

Query: 219 ELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS 278
              N TY  ++    +  L  EA+ W + M   GL PDEVT + ++ V   +G+ +   S
Sbjct: 213 LPTNNTYGMLVDVYGKAGLVTEALLWIKHMKLRGLFPDEVTMNTVVKVLKDAGEFDRAHS 272

Query: 279 LYERGVASGWKPDPIAFSVLGKMFGESGDYDG----IRYVLQEMKSLGVQ---PNLV--- 328
            Y+       + D +  + +G +  E G   G      ++  E+  +G +   P +V   
Sbjct: 273 FYKDWCIGKIELDDLELNSMGDI--EHGSGSGPVSFKHFLSTELFKIGGRIRTPKIVGSS 330

Query: 329 -------------VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA 375
                         YNTL++  GKAG+ G A  +F +M++SG+                 
Sbjct: 331 DAEKIVRKPRLTSTYNTLIDLYGKAGRLGDAADIFSDMMKSGVA---------------- 374

Query: 376 RWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYS 435
                              MD I +NT++  C   G + EAE L   M+      PD  +
Sbjct: 375 -------------------MDTITFNTMIYTCGSHGHLSEAETLLNKME-DRGVSPDTRT 414

Query: 436 YTAMLNIYGSGGNVDNAIELFEEMSELGV 464
           Y   L++Y   GN+D AI+ ++++ E+G+
Sbjct: 415 YNIFLSLYADEGNIDAAIKCYKKIREVGL 443



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 90/409 (22%), Positives = 159/409 (38%), Gaps = 75/409 (18%)

Query: 165 KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNIT 224
           K ++K++  F  ++    +P E   YN  ++             L  EM     +    T
Sbjct: 566 KLYEKAFTLFRSMRHHGTWPDECT-YNSLIQMFSGADLMDQARDLLTEMQGVGFKPQCAT 624

Query: 225 YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL------- 277
           +S+II C  R     +A   ++ M K G+ P+EV Y AI++ YA+ G V+E L       
Sbjct: 625 FSSIIACYARLGQLSDAAGVYQEMVKVGVKPNEVVYGAIINGYAEEGNVKEALKYFHMME 684

Query: 278 ----------------------------SLYERGVASGWKPDPIAFSVLGKMFG------ 303
                                        LY++ +     PD IA + +  ++       
Sbjct: 685 EYGISANQIVLTSLIKVYSKLGCFDSAKQLYQKMMCLEGGPDIIASNSMISLYADLGMIS 744

Query: 304 ----------ESGDYDGIRY------------------VLQEMKSLGVQPNLVVYNTLLE 335
                     E G  DG+ Y                  V +EMK  G+  + V YN ++ 
Sbjct: 745 EAELVFNNLREKGSADGVSYATMMYLYKGMGMLDEAIDVAEEMKLSGLLRDSVSYNKVMT 804

Query: 336 AMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA-LELWERMRENKWP 394
                G+      L  EM++  L PD  T   L  +  K     +A ++L     E K  
Sbjct: 805 CYATNGQLLECGELLHEMIKKKLFPDGGTFKILFTVLKKGGLPTEAVMQLESSYHEGKPY 864

Query: 395 MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIE 454
               +  ++ ++     L  E+ ++F    ++     D ++Y   +  YGS G +D A+ 
Sbjct: 865 ARQAVITSVFSLVGLHALAMESCKIFTKADIA----LDLFAYNVAIFAYGSSGEIDKALN 920

Query: 455 LFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
            F +M + G+  +++   CL+ C GKA  ++ + R++     R +KP D
Sbjct: 921 TFMKMQDEGLEPDLVTSICLVYCYGKAGMVEGVKRIYSQLKYRDIKPSD 969



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/342 (22%), Positives = 148/342 (43%), Gaps = 36/342 (10%)

Query: 185 METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEW 244
           M+TI +N  + +          E L N+M    +  D  TY+  ++        D AI+ 
Sbjct: 375 MDTITFNTMIYTCGSHGHLSEAETLLNKMEDRGVSPDTRTYNIFLSLYADEGNIDAAIKC 434

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
           ++++ + GL+PD V++ AIL    +   V+E  ++ E    S  + D  +   L KM+  
Sbjct: 435 YKKIREVGLLPDTVSHRAILHELCERNMVKEAEAIIEEIEKSSKQVDEHSLPGLVKMYIN 494

Query: 305 SGDYDGIRYVLQEMKS-----------------------------------LGVQPNLVV 329
            G +D    +L + +                                    +G + +++ 
Sbjct: 495 KGLFDRANDLLNKCQFGGGLSAKTNAAIIDAYAENGLWAEAEAVFYRKRDLVGQKTDILE 554

Query: 330 YNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMR 389
           YN +++A GK      A +LF  M   G  PDE T  +LI+++  A     A +L   M+
Sbjct: 555 YNVMIKAYGKGKLYEKAFTLFRSMRHHGTWPDECTYNSLIQMFSGADLMDQARDLLTEMQ 614

Query: 390 ENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNV 449
              +      +++++   A +G + +A  ++++M +    KP+   Y A++N Y   GNV
Sbjct: 615 GVGFKPQCATFSSIIACYARLGQLSDAAGVYQEM-VKVGVKPNEVVYGAIINGYAEEGNV 673

Query: 450 DNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
             A++ F  M E G++ N +  T LI+   K    D   +++
Sbjct: 674 KEALKYFHMMEEYGISANQIVLTSLIKVYSKLGCFDSAKQLY 715



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/323 (20%), Positives = 135/323 (41%), Gaps = 36/323 (11%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           TY+T+I    +     +A + F  M K+G+  D +T++ ++      G + E  +L  + 
Sbjct: 344 TYNTLIDLYGKAGRLGDAADIFSDMMKSGVAMDTITFNTMIYTCGSHGHLSEAETLLNKM 403

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
              G  PD   +++   ++ + G+ D      ++++ +G+ P+ V +  +L  + +    
Sbjct: 404 EDRGVSPDTRTYNIFLSLYADEGNIDAAIKCYKKIREVGLLPDTVSHRAILHELCERNMV 463

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIY------------------GKARWAKDALELW 385
             A ++ +E+ +S    DE +L  L+K+Y                  G    AK    + 
Sbjct: 464 KEAEAIIEEIEKSSKQVDEHSLPGLVKMYINKGLFDRANDLLNKCQFGGGLSAKTNAAII 523

Query: 386 ERMRENK-WP----------------MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428
           +   EN  W                  D + YN ++       L E+A  LF  M+    
Sbjct: 524 DAYAENGLWAEAEAVFYRKRDLVGQKTDILEYNVMIKAYGKGKLYEKAFTLFRSMRHHG- 582

Query: 429 CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLV 488
             PD  +Y +++ ++     +D A +L  EM  +G        + +I C  +  ++ D  
Sbjct: 583 TWPDECTYNSLIQMFSGADLMDQARDLLTEMQGVGFKPQCATFSSIIACYARLGQLSDAA 642

Query: 489 RVFGVSIDRGVKPDDRLCGCLLS 511
            V+   +  GVKP++ + G +++
Sbjct: 643 GVYQEMVKVGVKPNEVVYGAIIN 665



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 113/276 (40%), Gaps = 70/276 (25%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D ++Y+T++   K   + DEAI+  E M  +GL+ D V+Y+ ++  YA +G++ E   L 
Sbjct: 760 DGVSYATMMYLYKGMGMLDEAIDVAEEMKLSGLLRDSVSYNKVMTCYATNGQLLECGELL 819

Query: 281 ERGVASGWKPD----PIAFSVLGK--------MFGESGDYDGIRYVLQE----------M 318
              +     PD     I F+VL K        M  ES  ++G  Y  Q           +
Sbjct: 820 HEMIKKKLFPDGGTFKILFTVLKKGGLPTEAVMQLESSYHEGKPYARQAVITSVFSLVGL 879

Query: 319 KSLGVQP-----------NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
            +L ++            +L  YN  + A G +G+   A + F +M + GL PD  T   
Sbjct: 880 HALAMESCKIFTKADIALDLFAYNVAIFAYGSSGEIDKALNTFMKMQDEGLEPDLVTSIC 939

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           L+  YGKA                                   G+VE  +R++  +K  D
Sbjct: 940 LVYCYGKA-----------------------------------GMVEGVKRIYSQLKYRD 964

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
             KP + ++ A+++ Y      D A EL  +   LG
Sbjct: 965 -IKPSDSAFKAVVDAYEDANRHDLA-ELVNQELRLG 998



 Score = 48.5 bits (114), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 39/191 (20%), Positives = 79/191 (41%), Gaps = 4/191 (2%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           +++ YN  M       Q     +L +EM+  ++  D  T+  + T  K+  L  EA+   
Sbjct: 795 DSVSYNKVMTCYATNGQLLECGELLHEMIKKKLFPDGGTFKILFTVLKKGGLPTEAVMQL 854

Query: 246 ERMYKTGL-MPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
           E  Y  G     +   +++  +        E   ++ +   +    D  A++V    +G 
Sbjct: 855 ESSYHEGKPYARQAVITSVFSLVGLHALAMESCKIFTK---ADIALDLFAYNVAIFAYGS 911

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
           SG+ D       +M+  G++P+LV    L+   GKAG     + ++ ++    + P +  
Sbjct: 912 SGEIDKALNTFMKMQDEGLEPDLVTSICLVYCYGKAGMVEGVKRIYSQLKYRDIKPSDSA 971

Query: 365 LTALIKIYGKA 375
             A++  Y  A
Sbjct: 972 FKAVVDAYEDA 982



 Score = 45.4 bits (106), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 47/103 (45%)

Query: 217 EIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV 276
           +I LD   Y+  I         D+A+  F +M   GL PD VT   ++  Y K+G VE V
Sbjct: 894 DIALDLFAYNVAIFAYGSSGEIDKALNTFMKMQDEGLEPDLVTSICLVYCYGKAGMVEGV 953

Query: 277 LSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMK 319
             +Y +      KP   AF  +   + ++  +D    V QE++
Sbjct: 954 KRIYSQLKYRDIKPSDSAFKAVVDAYEDANRHDLAELVNQELR 996


>gi|58013026|gb|AAW62966.1| chloroplast embryo-defective 1270 [Arabidopsis thaliana]
          Length = 1429

 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 88/356 (24%), Positives = 166/356 (46%), Gaps = 17/356 (4%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEM-------VSNEIE 219
           WQ++   F W+  ++            +  L  GR  Q  E LA E+       V + ++
Sbjct: 171 WQRALEVFEWLNLRHWHSPNARMVAAILGVL--GRWNQ--ESLAVEIFTRAEPTVGDRVQ 226

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS- 278
           +    Y+ ++    R   F +A E  + M + G +PD ++++ +++   KSG +   L+ 
Sbjct: 227 V----YNAMMGVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAV 282

Query: 279 -LYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
            L +    SG +PD I ++ L        + DG   V ++M++   QP+L  YN ++   
Sbjct: 283 ELLDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVY 342

Query: 338 GKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDF 397
           G+ G    A  LF E+   G  PD  T  +L+  + + R  +   E++++M++  +  D 
Sbjct: 343 GRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDE 402

Query: 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE 457
           + YNT+++M    G ++ A +L++DMK      PD  +YT +++  G       A  L  
Sbjct: 403 MTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMS 462

Query: 458 EMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVV 513
           EM ++G+   +   + LI    KA + ++    F   +  G KPD+     +L V+
Sbjct: 463 EMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVL 518



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/298 (30%), Positives = 138/298 (46%), Gaps = 11/298 (3%)

Query: 212 EMVSNE-IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
           +MV N  +  D ITY+T+++   R +  D A++ FE M      PD  TY+A++ VY + 
Sbjct: 286 DMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRC 345

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
           G   E   L+      G+ PD + ++ L   F    + + ++ V Q+M+ +G   + + Y
Sbjct: 346 GLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTY 405

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVE-SGLTPDEKTLTALIKIYGKARWAKDALELWERMR 389
           NT++   GK G+  LA  L+ +M   SG  PD  T T LI   GKA    +A  L   M 
Sbjct: 406 NTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEML 465

Query: 390 ENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNV 449
           +         Y+ L+   A  G  EEAE  F  M L    KPDN +Y+ ML++   G   
Sbjct: 466 DVGIKPTLQTYSALICGYAKAGKREEAEDTFSCM-LRSGTKPDNLAYSVMLDVLLRGNET 524

Query: 450 DNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCG 507
             A  L+ +M   G   +      +I  L K  R DD        I + ++  + LCG
Sbjct: 525 RKAWGLYRDMISDGHTPSYTLYELMILGLMKENRSDD--------IQKTIRDMEELCG 574



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 151/314 (48%), Gaps = 7/314 (2%)

Query: 226 STIITCAKRCNLFDEAIEWFERMYKTGLMPDEV-TYSAILDVYAKSGKVEEVLSLYERGV 284
           + I+    R N    A+E F R   T  + D V  Y+A++ VY++SGK  +   L +   
Sbjct: 195 AAILGVLGRWNQESLAVEIFTRAEPT--VGDRVQVYNAMMGVYSRSGKFSKAQELVDAMR 252

Query: 285 ASGWKPDPIAFSVLGKMFGESGDYDGIRYV--LQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
             G  PD I+F+ L     +SG       V  L  +++ G++P+ + YNTLL A  +   
Sbjct: 253 QRGCVPDLISFNTLINARLKSGGLTPNLAVELLDMVRNSGLRPDAITYNTLLSACSRDSN 312

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
              A  +F++M      PD  T  A+I +YG+   A +A  L+  +    +  D + YN+
Sbjct: 313 LDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERLFMELELKGFFPDAVTYNS 372

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
           LL   A     E+ + +++ M+   + K D  +Y  ++++YG  G +D A++L+++M  L
Sbjct: 373 LLYAFARERNTEKVKEVYQQMQKMGFGK-DEMTYNTIIHMYGKQGQLDLALQLYKDMKGL 431

Query: 463 -GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSED 521
            G   + +  T LI  LGKA R  +   +    +D G+KP  +    L+   +     E+
Sbjct: 432 SGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKPTLQTYSALICGYAKAGKREE 491

Query: 522 VGKVITCLQQANPK 535
                +C+ ++  K
Sbjct: 492 AEDTFSCMLRSGTK 505



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 109/488 (22%), Positives = 204/488 (41%), Gaps = 42/488 (8%)

Query: 232  AKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291
            A+  N+F E  + +  M   G +P    Y  ++++  K  +V +   +      + +K +
Sbjct: 868  ARAGNIF-EVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVE 926

Query: 292  PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
               ++ + KM+    DY     V Q +K  G++P+   YNTL+    +  +P     L  
Sbjct: 927  LAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQ 986

Query: 352  EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411
            +M   GL P   T  +LI  +GK +  + A +L+E +      +D   Y+T++ +  D G
Sbjct: 987  QMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSG 1046

Query: 412  LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC 471
               +AE+L + MK +   +P   +   ++  Y S GN   A ++   + +  V +  +  
Sbjct: 1047 SDSKAEKLLQMMKNAG-IEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELTTLPY 1105

Query: 472  TCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVS----------LCETSED 521
            + +I    +++  +  +         G++PD R+  C +   S          L +  ED
Sbjct: 1106 SSVIDAYLRSKDYNSGIERLLEMKKEGLEPDHRIWTCFVRAASFSKEKIEVMLLLKALED 1165

Query: 522  VG-KVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDIC 580
            +G  +   L    P+L     L+ +    FE         +K  E +A   F N L+++ 
Sbjct: 1166 IGFDLPIRLLAGRPEL-----LVSEVDGWFEK--------LKSIEDNAALNFVNALLNLL 1212

Query: 581  RNRNLNERAHELLYLGTLYGLYPGLHNKTLD-EWSLDVRSLSVGAAQTA-LEEWMWTLAK 638
                L   A  +  LG   G++     +  D +W  D R LS GAA  A LE +  +   
Sbjct: 1213 WAFELRATASWVFQLGIKRGIFSLDVFRVADKDWGADFRRLSGGAALDASLEGYPESPKS 1272

Query: 639  IVLREEVLPQLFLAETGTGTHKFSQ-GLATAFASHVNKLAAPFRQSEGKAGCFVATREDL 697
            +VL              TGT +++   L     + + ++ +PF   + + G  VA    L
Sbjct: 1273 VVLI-------------TGTAEYNGISLDKTLKACLWEMGSPFLPCKTRTGLLVAKAHSL 1319

Query: 698  VSWVQARP 705
              W++  P
Sbjct: 1320 RMWLKDSP 1327



 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 72/373 (19%), Positives = 170/373 (45%), Gaps = 5/373 (1%)

Query: 225  YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
            Y+ II    +  L+ +A      + ++G  PD  T+++++  YA+ G  E   +++   +
Sbjct: 755  YTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMM 814

Query: 285  ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344
              G  P   + ++L       G  + +  V++E++ +G + +      +L+A  +AG   
Sbjct: 815  RDGPSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIF 874

Query: 345  LARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
              + ++  M  +G  P  +    +I++  K +  +DA  +   M E  + ++  ++N++L
Sbjct: 875  EVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSML 934

Query: 405  NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
             M   I   ++  ++++ +K +   +PD  +Y  ++ +Y      +    L ++M  LG+
Sbjct: 935  KMYTAIEDYKKTVQVYQRIKETG-LEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGL 993

Query: 465  AINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGK 524
               +     LI   GK + ++   ++F   + +G+K D      ++ +     +     K
Sbjct: 994  DPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEK 1053

Query: 525  VITCLQQAN--PKLVAF-LNLIEDNSTGFENIKEEFRNVIKDTEVD-ARRPFCNCLIDIC 580
            ++  ++ A   P L    L ++  +S+G     E+  + +KDTEV+    P+ + +    
Sbjct: 1054 LLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELTTLPYSSVIDAYL 1113

Query: 581  RNRNLNERAHELL 593
            R+++ N     LL
Sbjct: 1114 RSKDYNSGIERLL 1126



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 92/429 (21%), Positives = 157/429 (36%), Gaps = 85/429 (19%)

Query: 183 FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIEL-----DNITYSTIITCAKRCNL 237
           F  + + YN  +    +G+Q QL   LA ++  +   L     D ITY+ +I    + N 
Sbjct: 398 FGKDEMTYNTIIH--MYGKQGQL--DLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANR 453

Query: 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
             EA      M   G+ P   TYSA++  YAK+GK EE    +   + SG KPD +A+SV
Sbjct: 454 TVEAAALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSV 513

Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVE-S 356
           +  +     +      + ++M S G  P+  +Y  ++  + K  +    +    +M E  
Sbjct: 514 MLDVLLRGNETRKAWGLYRDMISDGHTPSYTLYELMILGLMKENRSDDIQKTIRDMEELC 573

Query: 357 GLTPDE------------------------------KTLTALIKIYGKARWAKDALELWE 386
           G+ P E                               TL +++  Y  +    +A EL E
Sbjct: 574 GMNPLEISSVLVKGECFDLAARQLKVAITNGYELENDTLLSILGSYSSSGRHSEAFELLE 633

Query: 387 RMRENK------------------------------------WPM-DFILYNTLLNMCAD 409
            ++E+                                     W      +Y TLL+ C  
Sbjct: 634 FLKEHASGSKRLITEALIVLHCKVNNLSAALDEYFADPCVHGWCFGSSTMYETLLHCCVA 693

Query: 410 IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVM 469
                EA ++F D++LS  C+       +M+ +Y   G  + A ++  +    G      
Sbjct: 694 NEHYAEASQVFSDLRLSG-CEASESVCKSMVVVYCKLGFPETAHQVVNQAETKGFHF--- 749

Query: 470 GC----TCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKV 525
            C    T +I+  GK +       V G     G  PD +    L+S  + C   E    +
Sbjct: 750 ACSPMYTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAI 809

Query: 526 ITCLQQANP 534
              + +  P
Sbjct: 810 FNTMMRDGP 818



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 82/186 (44%), Gaps = 5/186 (2%)

Query: 183  FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
            F +E   +N  +K       ++   Q+   +    +E D  TY+T+I    R    +E  
Sbjct: 923  FKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGY 982

Query: 243  EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
               ++M   GL P   TY +++  + K   +E+   L+E  ++ G K D   +  + K+ 
Sbjct: 983  LLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKIS 1042

Query: 303  GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
             +SG       +LQ MK+ G++P L   + L+ +   +G P  A     E V S L   E
Sbjct: 1043 RDSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEA-----EKVLSNLKDTE 1097

Query: 363  KTLTAL 368
              LT L
Sbjct: 1098 VELTTL 1103



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/232 (21%), Positives = 106/232 (45%), Gaps = 14/232 (6%)

Query: 158  LLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGR---QFQLIEQLANEMV 214
            L +  +++ ++K+   +  IK   L P ET +  + +   R  R    + L++Q+ N  +
Sbjct: 934  LKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGL 993

Query: 215  SNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVE 274
              +++    TY ++I+   +    ++A + FE +   GL  D   Y  ++ +   SG   
Sbjct: 994  DPKLD----TYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDS 1049

Query: 275  EVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLL 334
            +   L +    +G +P      +L   +  SG+      VL  +K   V+   + Y++++
Sbjct: 1050 KAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELTTLPYSSVI 1109

Query: 335  EAM--GKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384
            +A    K    G+ R L  EM + GL PD +  T  ++    A ++K+ +E+
Sbjct: 1110 DAYLRSKDYNSGIERLL--EMKKEGLEPDHRIWTCFVR---AASFSKEKIEV 1156



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 87/208 (41%), Gaps = 2/208 (0%)

Query: 325 PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384
           PN  +   +L  +G+  +  LA  +F    E  +    +   A++ +Y ++     A EL
Sbjct: 189 PNARMVAAILGVLGRWNQESLAVEIFTR-AEPTVGDRVQVYNAMMGVYSRSGKFSKAQEL 247

Query: 385 WERMRENKWPMDFILYNTLLNM-CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIY 443
            + MR+     D I +NTL+N      GL         DM  +   +PD  +Y  +L+  
Sbjct: 248 VDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAVELLDMVRNSGLRPDAITYNTLLSAC 307

Query: 444 GSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
               N+D A+++FE+M       ++     +I   G+     +  R+F     +G  PD 
Sbjct: 308 SRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERLFMELELKGFFPDA 367

Query: 504 RLCGCLLSVVSLCETSEDVGKVITCLQQ 531
                LL   +    +E V +V   +Q+
Sbjct: 368 VTYNSLLYAFARERNTEKVKEVYQQMQK 395



 Score = 47.0 bits (110), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 56/263 (21%), Positives = 107/263 (40%), Gaps = 40/263 (15%)

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
           +Y  ++EA GK      A S+   + +SG TPD KT                        
Sbjct: 754 MYTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKT------------------------ 789

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
                      +N+L++  A  G  E A  +F  M + D   P   S   +L+     G 
Sbjct: 790 -----------WNSLMSAYAQCGCYERARAIFNTM-MRDGPSPTVESINILLHALCVDGR 837

Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGC 508
           ++    + EE+ ++G  I+      ++    +A  I ++ +++      G  P  RL   
Sbjct: 838 LEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRM 897

Query: 509 LLSVVSLCETSEDVGKVITCLQQANPKL-VAFLNLIEDNSTGFENIKE--EFRNVIKDTE 565
           ++ ++   +   D   +++ +++AN K+ +A  N +    T  E+ K+  +    IK+T 
Sbjct: 898 MIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETG 957

Query: 566 VDARRPFCNCLIDI-CRNRNLNE 587
           ++      N LI + CR+R   E
Sbjct: 958 LEPDETTYNTLIIMYCRDRRPEE 980


>gi|334185431|ref|NP_188439.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|322510063|sp|Q5G1S8.2|PP241_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g18110, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 1270; Flags: Precursor
 gi|9294066|dbj|BAB02023.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642528|gb|AEE76049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1440

 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 88/356 (24%), Positives = 166/356 (46%), Gaps = 17/356 (4%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEM-------VSNEIE 219
           WQ++   F W+  ++            +  L  GR  Q  E LA E+       V + ++
Sbjct: 171 WQRALEVFEWLNLRHWHSPNARMVAAILGVL--GRWNQ--ESLAVEIFTRAEPTVGDRVQ 226

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS- 278
           +    Y+ ++    R   F +A E  + M + G +PD ++++ +++   KSG +   L+ 
Sbjct: 227 V----YNAMMGVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAV 282

Query: 279 -LYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
            L +    SG +PD I ++ L        + DG   V ++M++   QP+L  YN ++   
Sbjct: 283 ELLDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVY 342

Query: 338 GKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDF 397
           G+ G    A  LF E+   G  PD  T  +L+  + + R  +   E++++M++  +  D 
Sbjct: 343 GRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDE 402

Query: 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE 457
           + YNT+++M    G ++ A +L++DMK      PD  +YT +++  G       A  L  
Sbjct: 403 MTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMS 462

Query: 458 EMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVV 513
           EM ++G+   +   + LI    KA + ++    F   +  G KPD+     +L V+
Sbjct: 463 EMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVL 518



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/298 (30%), Positives = 138/298 (46%), Gaps = 11/298 (3%)

Query: 212 EMVSNE-IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
           +MV N  +  D ITY+T+++   R +  D A++ FE M      PD  TY+A++ VY + 
Sbjct: 286 DMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRC 345

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
           G   E   L+      G+ PD + ++ L   F    + + ++ V Q+M+ +G   + + Y
Sbjct: 346 GLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTY 405

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVE-SGLTPDEKTLTALIKIYGKARWAKDALELWERMR 389
           NT++   GK G+  LA  L+ +M   SG  PD  T T LI   GKA    +A  L   M 
Sbjct: 406 NTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEML 465

Query: 390 ENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNV 449
           +         Y+ L+   A  G  EEAE  F  M L    KPDN +Y+ ML++   G   
Sbjct: 466 DVGIKPTLQTYSALICGYAKAGKREEAEDTFSCM-LRSGTKPDNLAYSVMLDVLLRGNET 524

Query: 450 DNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCG 507
             A  L+ +M   G   +      +I  L K  R DD        I + ++  + LCG
Sbjct: 525 RKAWGLYRDMISDGHTPSYTLYELMILGLMKENRSDD--------IQKTIRDMEELCG 574



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 151/314 (48%), Gaps = 7/314 (2%)

Query: 226 STIITCAKRCNLFDEAIEWFERMYKTGLMPDEV-TYSAILDVYAKSGKVEEVLSLYERGV 284
           + I+    R N    A+E F R   T  + D V  Y+A++ VY++SGK  +   L +   
Sbjct: 195 AAILGVLGRWNQESLAVEIFTRAEPT--VGDRVQVYNAMMGVYSRSGKFSKAQELVDAMR 252

Query: 285 ASGWKPDPIAFSVLGKMFGESGDYDGIRYV--LQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
             G  PD I+F+ L     +SG       V  L  +++ G++P+ + YNTLL A  +   
Sbjct: 253 QRGCVPDLISFNTLINARLKSGGLTPNLAVELLDMVRNSGLRPDAITYNTLLSACSRDSN 312

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
              A  +F++M      PD  T  A+I +YG+   A +A  L+  +    +  D + YN+
Sbjct: 313 LDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERLFMELELKGFFPDAVTYNS 372

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
           LL   A     E+ + +++ M+   + K D  +Y  ++++YG  G +D A++L+++M  L
Sbjct: 373 LLYAFARERNTEKVKEVYQQMQKMGFGK-DEMTYNTIIHMYGKQGQLDLALQLYKDMKGL 431

Query: 463 -GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSED 521
            G   + +  T LI  LGKA R  +   +    +D G+KP  +    L+   +     E+
Sbjct: 432 SGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKPTLQTYSALICGYAKAGKREE 491

Query: 522 VGKVITCLQQANPK 535
                +C+ ++  K
Sbjct: 492 AEDTFSCMLRSGTK 505



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 109/487 (22%), Positives = 203/487 (41%), Gaps = 29/487 (5%)

Query: 232  AKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291
            A+  N+F E  + +  M   G +P    Y  ++++  K  +V +   +      + +K +
Sbjct: 868  ARAGNIF-EVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVE 926

Query: 292  PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
               ++ + KM+    DY     V Q +K  G++P+   YNTL+    +  +P     L  
Sbjct: 927  LAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQ 986

Query: 352  EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411
            +M   GL P   T  +LI  +GK +  + A +L+E +      +D   Y+T++ +  D G
Sbjct: 987  QMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSG 1046

Query: 412  LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC 471
               +AE+L + MK +   +P   +   ++  Y S GN   A ++   + +  V +  +  
Sbjct: 1047 SDSKAEKLLQMMKNAG-IEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELTTLPY 1105

Query: 472  TCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVS----------LCETSED 521
            + +I    +++  +  +         G++PD R+  C +   S          L +  ED
Sbjct: 1106 SSVIDAYLRSKDYNSGIERLLEMKKEGLEPDHRIWTCFVRAASFSKEKIEVMLLLKALED 1165

Query: 522  VG-KVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDIC 580
            +G  +   L    P+L     L+ +    FE         +K  E +A   F N L+++ 
Sbjct: 1166 IGFDLPIRLLAGRPEL-----LVSEVDGWFEK--------LKSIEDNAALNFVNALLNLL 1212

Query: 581  RNRNLNERAHELLYLGTLYGLYPGLHNKTLD-EWSLDVRSLSVGAAQTALEEWMWTLAKI 639
                L   A  +  LG   G++     +  D +W  D R LS GAA  AL  W+  +   
Sbjct: 1213 WAFELRATASWVFQLGIKRGIFSLDVFRVADKDWGADFRRLSGGAALVALTLWLDHMQDA 1272

Query: 640  VLRE-EVLPQLFLAETGTGTHKFSQGLATAFASHVNKLAAPFRQSEGKAGCFVATREDLV 698
             L      P+  +  TGT  +     L     + + ++ +PF   + + G  VA    L 
Sbjct: 1273 SLEGYPESPKSVVLITGTAEYN-GISLDKTLKACLWEMGSPFLPCKTRTGLLVAKAHSLR 1331

Query: 699  SWVQARP 705
             W++  P
Sbjct: 1332 MWLKDSP 1338



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 72/373 (19%), Positives = 170/373 (45%), Gaps = 5/373 (1%)

Query: 225  YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
            Y+ II    +  L+ +A      + ++G  PD  T+++++  YA+ G  E   +++   +
Sbjct: 755  YTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMM 814

Query: 285  ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344
              G  P   + ++L       G  + +  V++E++ +G + +      +L+A  +AG   
Sbjct: 815  RDGPSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIF 874

Query: 345  LARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
              + ++  M  +G  P  +    +I++  K +  +DA  +   M E  + ++  ++N++L
Sbjct: 875  EVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSML 934

Query: 405  NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
             M   I   ++  ++++ +K +   +PD  +Y  ++ +Y      +    L ++M  LG+
Sbjct: 935  KMYTAIEDYKKTVQVYQRIKETG-LEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGL 993

Query: 465  AINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGK 524
               +     LI   GK + ++   ++F   + +G+K D      ++ +     +     K
Sbjct: 994  DPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEK 1053

Query: 525  VITCLQQAN--PKLVAF-LNLIEDNSTGFENIKEEFRNVIKDTEVD-ARRPFCNCLIDIC 580
            ++  ++ A   P L    L ++  +S+G     E+  + +KDTEV+    P+ + +    
Sbjct: 1054 LLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELTTLPYSSVIDAYL 1113

Query: 581  RNRNLNERAHELL 593
            R+++ N     LL
Sbjct: 1114 RSKDYNSGIERLL 1126



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 92/429 (21%), Positives = 157/429 (36%), Gaps = 85/429 (19%)

Query: 183 FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIEL-----DNITYSTIITCAKRCNL 237
           F  + + YN  +    +G+Q QL   LA ++  +   L     D ITY+ +I    + N 
Sbjct: 398 FGKDEMTYNTIIH--MYGKQGQL--DLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANR 453

Query: 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
             EA      M   G+ P   TYSA++  YAK+GK EE    +   + SG KPD +A+SV
Sbjct: 454 TVEAAALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSV 513

Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVE-S 356
           +  +     +      + ++M S G  P+  +Y  ++  + K  +    +    +M E  
Sbjct: 514 MLDVLLRGNETRKAWGLYRDMISDGHTPSYTLYELMILGLMKENRSDDIQKTIRDMEELC 573

Query: 357 GLTPDE------------------------------KTLTALIKIYGKARWAKDALELWE 386
           G+ P E                               TL +++  Y  +    +A EL E
Sbjct: 574 GMNPLEISSVLVKGECFDLAARQLKVAITNGYELENDTLLSILGSYSSSGRHSEAFELLE 633

Query: 387 RMRENK------------------------------------WPM-DFILYNTLLNMCAD 409
            ++E+                                     W      +Y TLL+ C  
Sbjct: 634 FLKEHASGSKRLITEALIVLHCKVNNLSAALDEYFADPCVHGWCFGSSTMYETLLHCCVA 693

Query: 410 IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVM 469
                EA ++F D++LS  C+       +M+ +Y   G  + A ++  +    G      
Sbjct: 694 NEHYAEASQVFSDLRLSG-CEASESVCKSMVVVYCKLGFPETAHQVVNQAETKGFHF--- 749

Query: 470 GC----TCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKV 525
            C    T +I+  GK +       V G     G  PD +    L+S  + C   E    +
Sbjct: 750 ACSPMYTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAI 809

Query: 526 ITCLQQANP 534
              + +  P
Sbjct: 810 FNTMMRDGP 818



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 82/186 (44%), Gaps = 5/186 (2%)

Query: 183  FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
            F +E   +N  +K       ++   Q+   +    +E D  TY+T+I    R    +E  
Sbjct: 923  FKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGY 982

Query: 243  EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
               ++M   GL P   TY +++  + K   +E+   L+E  ++ G K D   +  + K+ 
Sbjct: 983  LLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKIS 1042

Query: 303  GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
             +SG       +LQ MK+ G++P L   + L+ +   +G P  A     E V S L   E
Sbjct: 1043 RDSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEA-----EKVLSNLKDTE 1097

Query: 363  KTLTAL 368
              LT L
Sbjct: 1098 VELTTL 1103



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/232 (21%), Positives = 106/232 (45%), Gaps = 14/232 (6%)

Query: 158  LLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGR---QFQLIEQLANEMV 214
            L +  +++ ++K+   +  IK   L P ET +  + +   R  R    + L++Q+ N  +
Sbjct: 934  LKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGL 993

Query: 215  SNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVE 274
              +++    TY ++I+   +    ++A + FE +   GL  D   Y  ++ +   SG   
Sbjct: 994  DPKLD----TYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDS 1049

Query: 275  EVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLL 334
            +   L +    +G +P      +L   +  SG+      VL  +K   V+   + Y++++
Sbjct: 1050 KAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELTTLPYSSVI 1109

Query: 335  EAM--GKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384
            +A    K    G+ R L  EM + GL PD +  T  ++    A ++K+ +E+
Sbjct: 1110 DAYLRSKDYNSGIERLL--EMKKEGLEPDHRIWTCFVR---AASFSKEKIEV 1156



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 87/208 (41%), Gaps = 2/208 (0%)

Query: 325 PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384
           PN  +   +L  +G+  +  LA  +F    E  +    +   A++ +Y ++     A EL
Sbjct: 189 PNARMVAAILGVLGRWNQESLAVEIFTR-AEPTVGDRVQVYNAMMGVYSRSGKFSKAQEL 247

Query: 385 WERMRENKWPMDFILYNTLLNM-CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIY 443
            + MR+     D I +NTL+N      GL         DM  +   +PD  +Y  +L+  
Sbjct: 248 VDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAVELLDMVRNSGLRPDAITYNTLLSAC 307

Query: 444 GSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
               N+D A+++FE+M       ++     +I   G+     +  R+F     +G  PD 
Sbjct: 308 SRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERLFMELELKGFFPDA 367

Query: 504 RLCGCLLSVVSLCETSEDVGKVITCLQQ 531
                LL   +    +E V +V   +Q+
Sbjct: 368 VTYNSLLYAFARERNTEKVKEVYQQMQK 395



 Score = 47.4 bits (111), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 56/263 (21%), Positives = 107/263 (40%), Gaps = 40/263 (15%)

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
           +Y  ++EA GK      A S+   + +SG TPD KT                        
Sbjct: 754 MYTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKT------------------------ 789

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
                      +N+L++  A  G  E A  +F  M + D   P   S   +L+     G 
Sbjct: 790 -----------WNSLMSAYAQCGCYERARAIFNTM-MRDGPSPTVESINILLHALCVDGR 837

Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGC 508
           ++    + EE+ ++G  I+      ++    +A  I ++ +++      G  P  RL   
Sbjct: 838 LEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRM 897

Query: 509 LLSVVSLCETSEDVGKVITCLQQANPKL-VAFLNLIEDNSTGFENIKE--EFRNVIKDTE 565
           ++ ++   +   D   +++ +++AN K+ +A  N +    T  E+ K+  +    IK+T 
Sbjct: 898 MIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETG 957

Query: 566 VDARRPFCNCLIDI-CRNRNLNE 587
           ++      N LI + CR+R   E
Sbjct: 958 LEPDETTYNTLIIMYCRDRRPEE 980


>gi|413915966|gb|AFW55898.1| hypothetical protein ZEAMMB73_909442, partial [Zea mays]
          Length = 694

 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 84/332 (25%), Positives = 155/332 (46%), Gaps = 6/332 (1%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F  +K+    P + + YN  +       + + +E L +EM  +    D +TY+ +I C 
Sbjct: 221 LFVRMKAMGCSP-DVVTYNSLIDGYGKCGELEEVELLVSEMRKSGCAADVVTYNALINCF 279

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +    ++A  +F  M + G+M + VT S  +D + K G V E + L+ +    G  P+ 
Sbjct: 280 SKFGWIEKAYSYFGEMKRLGVMANVVTLSTFVDAFCKEGLVREAMKLFAQMRVRGMMPNE 339

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
             ++ L     ++G  D    +L EM   G+ PN+V Y  +++ + K GK  +A  +   
Sbjct: 340 FTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAVADDVLSL 399

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M  +G+  +E   T LI  +   + ++ AL+L   M+     +D  LY TL+     +  
Sbjct: 400 MERAGVKANELLYTTLIHGHFMNKNSERALDLLNEMKNKGMELDVSLYGTLIWGLCKVQK 459

Query: 413 VEEAERLFEDMKLSDYC--KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG 470
           ++EA+ L   M   D C  +P+   YT +++ +   G    A+ L  ++ + G+  NV+ 
Sbjct: 460 LDEAKSLLHKM---DDCGLRPNTVIYTTIMDAFFKAGKESEAVALLHKIPDSGLQPNVVT 516

Query: 471 CTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
              LI  L KA  I + +  F    + G+ P+
Sbjct: 517 YCALIDGLCKAGSIYEAISHFDKMRELGLDPN 548



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 126/252 (50%), Gaps = 3/252 (1%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L NEM +  +ELD   Y T+I    +    DEA     +M   GL P+ V Y+ I+D + 
Sbjct: 431 LLNEMKNKGMELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTIMDAFF 490

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD-YDGIRYVLQEMKSLGVQPNL 327
           K+GK  E ++L  +   SG +P+ + +  L     ++G  Y+ I +   +M+ LG+ PN+
Sbjct: 491 KAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISH-FDKMRELGLDPNV 549

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
            VY TL++   K G    A  L +EMV+ G++ D+   T+LI  + K    + A  L  +
Sbjct: 550 QVYTTLIDGFCKIGSLSKAVHLMNEMVDKGMSLDKVVYTSLIDGHMKQGDLQGAFALKAK 609

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           M E    +D   Y   ++   ++ +++EA  +  +M +     PD  +Y  ++  Y   G
Sbjct: 610 MIETGLQLDLYCYTCFISGFCNMNMMQEARGVLSEM-IGTGITPDKTAYNCLIRKYQKLG 668

Query: 448 NVDNAIELFEEM 459
           N++ A  L  EM
Sbjct: 669 NMEEASSLQNEM 680



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 102/399 (25%), Positives = 178/399 (44%), Gaps = 54/399 (13%)

Query: 156 NALLILNSLKFW-QKSYFFFNWIKS----QNLFPMETIFYNVTMKSLRFGRQFQLIEQL- 209
           NAL+   S   W +K+Y +F  +K      N+  + T F +   K        +L  Q+ 
Sbjct: 273 NALINCFSKFGWIEKAYSYFGEMKRLGVMANVVTLST-FVDAFCKEGLVREAMKLFAQMR 331

Query: 210 ANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAK 269
              M+ NE      TY++++    +    D+AI   + M   GL+P+ VTY+ ++D   K
Sbjct: 332 VRGMMPNEF-----TYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCK 386

Query: 270 SGKV---EEVLSLYERGVASGWKPDPIAFSVL--GKMFGESGD----------------- 307
            GKV   ++VLSL ER   +G K + + ++ L  G    ++ +                 
Sbjct: 387 EGKVAVADDVLSLMER---AGVKANELLYTTLIHGHFMNKNSERALDLLNEMKNKGMELD 443

Query: 308 ----------------YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
                            D  + +L +M   G++PN V+Y T+++A  KAGK   A +L  
Sbjct: 444 VSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTIMDAFFKAGKESEAVALLH 503

Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411
           ++ +SGL P+  T  ALI    KA    +A+  +++MRE     +  +Y TL++    IG
Sbjct: 504 KIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHFDKMRELGLDPNVQVYTTLIDGFCKIG 563

Query: 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC 471
            + +A  L  +M +      D   YT++++ +   G++  A  L  +M E G+ +++   
Sbjct: 564 SLSKAVHLMNEM-VDKGMSLDKVVYTSLIDGHMKQGDLQGAFALKAKMIETGLQLDLYCY 622

Query: 472 TCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
           TC I        + +   V    I  G+ PD     CL+
Sbjct: 623 TCFISGFCNMNMMQEARGVLSEMIGTGITPDKTAYNCLI 661



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 86/319 (26%), Positives = 146/319 (45%), Gaps = 5/319 (1%)

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           P  T   N  +  L   RQ  L+ +L   + +  +     T++ +I    +     EA  
Sbjct: 165 PPNTRTCNHILLRLARNRQGGLVRRLFEHLPAPNV----FTFNIVIDFLCKQGELVEARA 220

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
            F RM   G  PD VTY++++D Y K G++EEV  L      SG   D + ++ L   F 
Sbjct: 221 LFVRMKAMGCSPDVVTYNSLIDGYGKCGELEEVELLVSEMRKSGCAADVVTYNALINCFS 280

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
           + G  +       EMK LGV  N+V  +T ++A  K G    A  LF +M   G+ P+E 
Sbjct: 281 KFGWIEKAYSYFGEMKRLGVMANVVTLSTFVDAFCKEGLVREAMKLFAQMRVRGMMPNEF 340

Query: 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
           T T+L+    KA    DA+ L + M       + + Y  +++     G V  A+ +   M
Sbjct: 341 TYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAVADDVLSLM 400

Query: 424 KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483
           + +   K +   YT +++ +    N + A++L  EM   G+ ++V     LI  L K ++
Sbjct: 401 ERAGV-KANELLYTTLIHGHFMNKNSERALDLLNEMKNKGMELDVSLYGTLIWGLCKVQK 459

Query: 484 IDDLVRVFGVSIDRGVKPD 502
           +D+   +     D G++P+
Sbjct: 460 LDEAKSLLHKMDDCGLRPN 478



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/282 (25%), Positives = 135/282 (47%), Gaps = 5/282 (1%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
            + T+++      L D+A+    R+ +  + P+  T + IL   A++ +   V  L+E  
Sbjct: 135 VFDTLLSLLADHGLLDDAVRALARVRQLRVPPNTRTCNHILLRLARNRQGGLVRRLFEHL 194

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
            A    P+   F+++     + G+    R +   MK++G  P++V YN+L++  GK G+ 
Sbjct: 195 PA----PNVFTFNIVIDFLCKQGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGEL 250

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
                L  EM +SG   D  T  ALI  + K  W + A   +  M+      + +  +T 
Sbjct: 251 EEVELLVSEMRKSGCAADVVTYNALINCFSKFGWIEKAYSYFGEMKRLGVMANVVTLSTF 310

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           ++     GLV EA +LF  M++     P+ ++YT++++     G +D+AI L +EM   G
Sbjct: 311 VDAFCKEGLVREAMKLFAQMRVRGM-MPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQG 369

Query: 464 VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRL 505
           +  NV+  T ++  L K  ++     V  +    GVK ++ L
Sbjct: 370 LVPNVVTYTVMVDGLCKEGKVAVADDVLSLMERAGVKANELL 411



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/304 (22%), Positives = 134/304 (44%), Gaps = 2/304 (0%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
             + +  Q L P   + Y V +  L    +  + + + + M    ++ + + Y+T+I   
Sbjct: 361 LLDEMVHQGLVP-NVVTYTVMVDGLCKEGKVAVADDVLSLMERAGVKANELLYTTLIHGH 419

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
                 + A++    M   G+  D   Y  ++    K  K++E  SL  +    G +P+ 
Sbjct: 420 FMNKNSERALDLLNEMKNKGMELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNT 479

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           + ++ +   F ++G       +L ++   G+QPN+V Y  L++ + KAG    A S FD+
Sbjct: 480 VIYTTIMDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHFDK 539

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M E GL P+ +  T LI  + K      A+ L   M +    +D ++Y +L++     G 
Sbjct: 540 MRELGLDPNVQVYTTLIDGFCKIGSLSKAVHLMNEMVDKGMSLDKVVYTSLIDGHMKQGD 599

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
           ++ A  L   M +    + D Y YT  ++ + +   +  A  +  EM   G+  +     
Sbjct: 600 LQGAFALKAKM-IETGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPDKTAYN 658

Query: 473 CLIQ 476
           CLI+
Sbjct: 659 CLIR 662



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 95/212 (44%), Gaps = 5/212 (2%)

Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
           P  F  L  +  + G  D     L  ++ L V PN    N +L  + +  + GL R LF+
Sbjct: 133 PSVFDTLLSLLADHGLLDDAVRALARVRQLRVPPNTRTCNHILLRLARNRQGGLVRRLFE 192

Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411
            +      P+  T   +I    K     +A  L+ RM+      D + YN+L++     G
Sbjct: 193 HLP----APNVFTFNIVIDFLCKQGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCG 248

Query: 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC 471
            +EE E L  +M+ S  C  D  +Y A++N +   G ++ A   F EM  LGV  NV+  
Sbjct: 249 ELEEVELLVSEMRKSG-CAADVVTYNALINCFSKFGWIEKAYSYFGEMKRLGVMANVVTL 307

Query: 472 TCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
           +  +    K   + + +++F     RG+ P++
Sbjct: 308 STFVDAFCKEGLVREAMKLFAQMRVRGMMPNE 339



 Score = 46.6 bits (109), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 26/114 (22%), Positives = 52/114 (45%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
            L NEMV   + LD + Y+++I    +      A     +M +TGL  D   Y+  +  +
Sbjct: 570 HLMNEMVDKGMSLDKVVYTSLIDGHMKQGDLQGAFALKAKMIETGLQLDLYCYTCFISGF 629

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
                ++E   +    + +G  PD  A++ L + + + G+ +    +  EM+S+
Sbjct: 630 CNMNMMQEARGVLSEMIGTGITPDKTAYNCLIRKYQKLGNMEEASSLQNEMESV 683


>gi|15226907|ref|NP_181058.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100538|sp|O82178.1|PP186_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g35130
 gi|3668091|gb|AAC61823.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253974|gb|AEC09068.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 591

 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 140/290 (48%), Gaps = 7/290 (2%)

Query: 255 PDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYV 314
           P+  TY+A+++ +A+ G  E+   ++E+    G +PD   ++ L + +  +G   G   +
Sbjct: 297 PNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEI 356

Query: 315 LQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK 374
              M+ +G +P+   YN +++A G+AG    A ++F+EM   G+ P  K+   L+  Y K
Sbjct: 357 FSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSK 416

Query: 375 ARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNY 434
           AR       + + M EN    D  + N++LN+   +G   + E++  +M+ +  C  D  
Sbjct: 417 ARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEME-NGPCTADIS 475

Query: 435 SYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVS 494
           +Y  ++NIYG  G ++   ELF E+ E     +V+  T  I    + +     + VF   
Sbjct: 476 TYNILINIYGKAGFLERIEELFVELKEKNFRPDVVTWTSRIGAYSRKKLYVKCLEVFEEM 535

Query: 495 IDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQA------NPKLVA 538
           ID G  PD      LLS  S  E  E V  V+  + +        PKL+A
Sbjct: 536 IDSGCAPDGGTAKVLLSACSSEEQVEQVTSVLRTMHKGVTVSSLVPKLMA 585



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 146/295 (49%), Gaps = 8/295 (2%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           +L  EM S++ + +  TY+ ++    R  L ++A E FE++ + GL PD   Y+A+++ Y
Sbjct: 285 KLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESY 344

Query: 268 AKSG---KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQ 324
           +++G      E+ SL +     G +PD  +++++   +G +G +     V +EMK LG+ 
Sbjct: 345 SRAGYPYGAAEIFSLMQH---MGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIA 401

Query: 325 PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384
           P +  +  LL A  KA       ++  EM E+G+ PD   L +++ +YG+        ++
Sbjct: 402 PTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKI 461

Query: 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYG 444
              M       D   YN L+N+    G +E  E LF ++K  ++ +PD  ++T+ +  Y 
Sbjct: 462 LAEMENGPCTADISTYNILINIYGKAGFLERIEELFVELKEKNF-RPDVVTWTSRIGAYS 520

Query: 445 SGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGV 499
                   +E+FEEM + G A +      L+       +++ +  V   ++ +GV
Sbjct: 521 RKKLYVKCLEVFEEMIDSGCAPDGGTAKVLLSACSSEEQVEQVTSVLR-TMHKGV 574



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 146/337 (43%), Gaps = 51/337 (15%)

Query: 214 VSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKV 273
           VS ++ L+    S I+ C           EW  R  K+   PD + ++ ++D Y +  + 
Sbjct: 125 VSVQLRLNKKWDSIILVC-----------EWILR--KSSFQPDVICFNLLIDAYGQKFQY 171

Query: 274 EEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV---VY 330
           +E  SLY + + S + P    +++L K +  +G  +    VL EM++  V P  +   VY
Sbjct: 172 KEAESLYVQLLESRYVPTEDTYALLIKAYCMAGLIERAEVVLVEMQNHHVSPKTIGVTVY 231

Query: 331 NTLLEA-MGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMR 389
           N  +E  M + G    A  +F  M      P  +T   +I +YGKA  +  + +L+  MR
Sbjct: 232 NAYIEGLMKRKGNTEEAIDVFQRMKRDRCKPTTETYNLMINLYGKASKSYMSWKLYCEMR 291

Query: 390 ENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK--------------LSDY------- 428
            ++   +   Y  L+N  A  GL E+AE +FE ++              +  Y       
Sbjct: 292 SHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPY 351

Query: 429 -------------CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLI 475
                        C+PD  SY  M++ YG  G   +A  +FEEM  LG+A  +     L+
Sbjct: 352 GAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLL 411

Query: 476 QCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSV 512
               KAR +     +     + GV+PD  +   +L++
Sbjct: 412 SAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSMLNL 448



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 95/212 (44%), Gaps = 5/212 (2%)

Query: 324 QPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA-L 382
           QP+++ +N L++A G+  +   A SL+ +++ES   P E T   LIK Y  A   + A +
Sbjct: 152 QPDVICFNLLIDAYGQKFQYKEAESLYVQLLESRYVPTEDTYALLIKAYCMAGLIERAEV 211

Query: 383 ELWERMRENKWP--MDFILYNTLL-NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAM 439
            L E    +  P  +   +YN  +  +    G  EEA  +F+ MK  D CKP   +Y  M
Sbjct: 212 VLVEMQNHHVSPKTIGVTVYNAYIEGLMKRKGNTEEAIDVFQRMK-RDRCKPTTETYNLM 270

Query: 440 LNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGV 499
           +N+YG       + +L+ EM       N+   T L+    +    +    +F    + G+
Sbjct: 271 INLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGL 330

Query: 500 KPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ 531
           +PD  +   L+   S         ++ + +Q 
Sbjct: 331 EPDVYVYNALMESYSRAGYPYGAAEIFSLMQH 362


>gi|299471432|emb|CBN79384.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 962

 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 92/345 (26%), Positives = 154/345 (44%), Gaps = 12/345 (3%)

Query: 194 MKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY-KTG 252
           +K+  F   ++ +  L +EM    +E +   Y+T I    RC    EA      M  +  
Sbjct: 29  IKAAGFRGNWREVAALVSEMGGKGVEGNVYIYNTAIAAMARCGRPREAEALLTVMLERDS 88

Query: 253 LMPDEVTYSAILDVYAKSGKVEEVLSLYER--GVASGW---KPDPIAFSVLGKMFGESGD 307
           + PD ++Y++ ++ +A+ G ++    L  R   +ASG     PD   ++ +     + GD
Sbjct: 89  IAPDTISYNSAINGHARCGDLDAARRLLGRMTELASGGALLHPDQFTYNAVANAAAKRGD 148

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
                 VL+ M   GV PN++ YN+ L A    G    A  L + M E G+ PD+++ +A
Sbjct: 149 AVAAAEVLKMMAEAGVTPNIITYNSCLAACKAKGDLRRAVVLLEIMREDGIDPDQRSYSA 208

Query: 368 LIKIYG-KARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
            I   G +  W ++     E MRE     D + +NT +   AD G  + A  L  +MK +
Sbjct: 209 AIATAGIRGLW-EEVQGFLETMREEDLTPDTVTFNTAIKAVADNGQCDVAFSLLAEMK-N 266

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
           +   PD  SY  +L   G+ G    A+ L E+M + GV  N    +  +   GKA R  +
Sbjct: 267 EGLTPDQISYNGVLGACGNAGEWKAALRLLEDMRQAGVTPNAYNYSAAMDACGKAGRQRE 326

Query: 487 LVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ 531
            + + G     GV+ D     C  + +  C  + D    +  LQ+
Sbjct: 327 ALALLGHMRKAGVRAD---TACYNAAIDACSVAMDWTAAVQLLQE 368



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 124/297 (41%), Gaps = 20/297 (6%)

Query: 182 LFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEA 241
           L P +  +  V   + + G      E L   M    +  + ITY++ +   K       A
Sbjct: 129 LHPDQFTYNAVANAAAKRGDAVAAAEVL-KMMAEAGVTPNIITYNSCLAACKAKGDLRRA 187

Query: 242 IEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKM 301
           +   E M + G+ PD+ +YSA +      G  EEV    E        PD + F+   K 
Sbjct: 188 VVLLEIMREDGIDPDQRSYSAAIATAGIRGLWEEVQGFLETMREEDLTPDTVTFNTAIKA 247

Query: 302 FGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD 361
             ++G  D    +L EMK+ G+ P+ + YN +L A G AG+   A  L ++M ++G+TP+
Sbjct: 248 VADNGQCDVAFSLLAEMKNEGLTPDQISYNGVLGACGNAGEWKAALRLLEDMRQAGVTPN 307

Query: 362 EKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFE 421
               +A +   GKA   ++AL L   MR+     D   YN  ++ C+       A +L +
Sbjct: 308 AYNYSAAMDACGKAGRQREALALLGHMRKAGVRADTACYNAAIDACSVAMDWTAAVQLLQ 367

Query: 422 DMKLSDYCK-------------------PDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           +MKL                        PD  SY + +        VD A+ L  E+
Sbjct: 368 EMKLGVAGAASGGAPGGGGTAGVEVAPPPDVVSYASAITACARARRVDEALGLLSEL 424



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 113/260 (43%), Gaps = 20/260 (7%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           I YN  + + +     +    L   M  + I+ D  +YS  I  A    L++E   + E 
Sbjct: 169 ITYNSCLAACKAKGDLRRAVVLLEIMREDGIDPDQRSYSAAIATAGIRGLWEEVQGFLET 228

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M +  L PD VT++  +   A +G+ +   SL       G  PD I+++ +    G +G+
Sbjct: 229 MREEDLTPDTVTFNTAIKAVADNGQCDVAFSLLAEMKNEGLTPDQISYNGVLGACGNAGE 288

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
           +     +L++M+  GV PN   Y+  ++A GKAG+   A +L   M ++G+  D     A
Sbjct: 289 WKAALRLLEDMRQAGVTPNAYNYSAAMDACGKAGRQREALALLGHMRKAGVRADTACYNA 348

Query: 368 LIKIYGKARWAKDALELWERMR--------------------ENKWPMDFILYNTLLNMC 407
            I     A     A++L + M+                    E   P D + Y + +  C
Sbjct: 349 AIDACSVAMDWTAAVQLLQEMKLGVAGAASGGAPGGGGTAGVEVAPPPDVVSYASAITAC 408

Query: 408 ADIGLVEEAERLFEDMKLSD 427
           A    V+EA  L  ++++++
Sbjct: 409 ARARRVDEALGLLSELRVNE 428



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 73/386 (18%), Positives = 147/386 (38%), Gaps = 55/386 (14%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           P Q +   A+        W++   F   ++ ++L P +T+ +N  +K++    Q  +   
Sbjct: 201 PDQRSYSAAIATAGIRGLWEEVQGFLETMREEDLTP-DTVTFNTAIKAVADNGQCDVAFS 259

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  EM +  +  D I+Y+ ++        +  A+   E M + G+ P+   YSA +D   
Sbjct: 260 LLAEMKNEGLTPDQISYNGVLGACGNAGEWKAALRLLEDMRQAGVTPNAYNYSAAMDACG 319

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMK--------- 319
           K+G+  E L+L      +G + D   ++        + D+     +LQEMK         
Sbjct: 320 KAGRQREALALLGHMRKAGVRADTACYNAAIDACSVAMDWTAAVQLLQEMKLGVAGAASG 379

Query: 320 -----------SLGVQPNLVVYNTLLEAMGKAGKPGLA---------------------- 346
                       +   P++V Y + + A  +A +   A                      
Sbjct: 380 GAPGGGGTAGVEVAPPPDVVSYASAITACARARRVDEALGLLSELRVNEAQAAAAAAGDV 439

Query: 347 ---RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
                L DEM+ +GL P++     ++  +      + A+ L  R++ + +      Y T+
Sbjct: 440 ACGAELLDEMIAAGLRPNKIHCDTMVAAWSAEGKPERAVALMRRLQSHGFEPSLYTYETI 499

Query: 404 LNMCADIGLVEEAE----RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           +      G  +EA       F    L    +P   S+ A +      G+ + A+ L  +M
Sbjct: 500 V-----WGFAKEANWAAAVRFLAYVLGLGLQPSVRSWDAAIAACSQAGHWERALALLADM 554

Query: 460 SELGVAINVMGCTCLIQCLGKARRID 485
            + G+  + +  T  +  + + R  D
Sbjct: 555 RKQGIRPSKVTYTAAVVGINRRRYTD 580



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/189 (21%), Positives = 80/189 (42%), Gaps = 25/189 (13%)

Query: 221 DNITYSTIITCAKRCNLFDEAI-------------------------EWFERMYKTGLMP 255
           D ++Y++ IT   R    DEA+                         E  + M   GL P
Sbjct: 397 DVVSYASAITACARARRVDEALGLLSELRVNEAQAAAAAAGDVACGAELLDEMIAAGLRP 456

Query: 256 DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVL 315
           +++    ++  ++  GK E  ++L  R  + G++P    +  +   F +  ++      L
Sbjct: 457 NKIHCDTMVAAWSAEGKPERAVALMRRLQSHGFEPSLYTYETIVWGFAKEANWAAAVRFL 516

Query: 316 QEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA 375
             +  LG+QP++  ++  + A  +AG    A +L  +M + G+ P + T TA +    + 
Sbjct: 517 AYVLGLGLQPSVRSWDAAIAACSQAGHWERALALLADMRKQGIRPSKVTYTAAVVGINRR 576

Query: 376 RWAKDALEL 384
           R+   A EL
Sbjct: 577 RYTDWAPEL 585


>gi|242092396|ref|XP_002436688.1| hypothetical protein SORBIDRAFT_10g007070 [Sorghum bicolor]
 gi|241914911|gb|EER88055.1| hypothetical protein SORBIDRAFT_10g007070 [Sorghum bicolor]
          Length = 551

 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 95/369 (25%), Positives = 171/369 (46%), Gaps = 38/369 (10%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           FF W + Q  F      ++  +++L   +QF+L+  L   M    + L   T+  I+   
Sbjct: 151 FFRWAERQEGFSYTAEGFHNLIEALGKIKQFKLVWSLVETMRCRGL-LSKDTFKLIVRRY 209

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG-WKPD 291
            R     EA+E FE+M   GL  +   Y+ ++D  +KS +V++  ++Y+     G + PD
Sbjct: 210 ARARKVKEAVETFEKMSIFGLKTELSDYNWLIDTLSKSKQVKKAQAIYKEMKRKGKFVPD 269

Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
              ++VL + +G   D   ++ + QEM   G++P++V Y  L+ A  K+GK   A  +F 
Sbjct: 270 LKTYTVLMEGWGHEKDLLMVKTMYQEMIDAGIRPDVVAYGMLISAFCKSGKCDEAIKVFY 329

Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMD--------------- 396
           EM  SG  P       LI   G      +AL+ +E+ +++ +PM+               
Sbjct: 330 EMEASGCMPSPHVYCMLINGLGSEERLDEALKYFEQYKKSGFPMEVPTCNAVVGAYCRAS 389

Query: 397 -----FIL---------------YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY 436
                F +               Y+ +L+        EEA  +F+ M + D C+P   +Y
Sbjct: 390 KFEHAFKMVDEMRECKIGPNSRTYDVILHYLIKSQKFEEAYNVFQRMGM-DGCEPQLNTY 448

Query: 437 TAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496
           T M+ ++ S G VD A+ ++++M E GV   +   + LI  L    R+++    F   +D
Sbjct: 449 TMMVGMFCSNGRVDMALNVWKQMGERGVLPCMHMFSALINGLCFENRLEEACVYFQEMLD 508

Query: 497 RGVKPDDRL 505
           +G++P  +L
Sbjct: 509 KGIRPPGQL 517



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 65/296 (21%), Positives = 131/296 (44%), Gaps = 3/296 (1%)

Query: 161 LNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIEL 220
           L+  K  +K+   +  +K +  F  +   Y V M+     +   +++ +  EM+   I  
Sbjct: 244 LSKSKQVKKAQAIYKEMKRKGKFVPDLKTYTVLMEGWGHEKDLLMVKTMYQEMIDAGIRP 303

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D + Y  +I+   +    DEAI+ F  M  +G MP    Y  +++      +++E L  +
Sbjct: 304 DVVAYGMLISAFCKSGKCDEAIKVFYEMEASGCMPSPHVYCMLINGLGSEERLDEALKYF 363

Query: 281 ERGVASGWKPD-PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
           E+   SG+  + P   +V+G  +  +  ++    ++ EM+   + PN   Y+ +L  + K
Sbjct: 364 EQYKKSGFPMEVPTCNAVVGA-YCRASKFEHAFKMVDEMRECKIGPNSRTYDVILHYLIK 422

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
           + K   A ++F  M   G  P   T T ++ ++        AL +W++M E        +
Sbjct: 423 SQKFEEAYNVFQRMGMDGCEPQLNTYTMMVGMFCSNGRVDMALNVWKQMGERGVLPCMHM 482

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIEL 455
           ++ L+N       +EEA   F++M L    +P    ++ +      GG +  A E+
Sbjct: 483 FSALINGLCFENRLEEACVYFQEM-LDKGIRPPGQLFSNLKEALVEGGRISLAQEM 537



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 88/189 (46%), Gaps = 2/189 (1%)

Query: 172 FFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITC 231
           +F  + KS   FPME    N  + +     +F+   ++ +EM   +I  ++ TY  I+  
Sbjct: 362 YFEQYKKSG--FPMEVPTCNAVVGAYCRASKFEHAFKMVDEMRECKIGPNSRTYDVILHY 419

Query: 232 AKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291
             +   F+EA   F+RM   G  P   TY+ ++ ++  +G+V+  L+++++    G  P 
Sbjct: 420 LIKSQKFEEAYNVFQRMGMDGCEPQLNTYTMMVGMFCSNGRVDMALNVWKQMGERGVLPC 479

Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
              FS L          +      QEM   G++P   +++ L EA+ + G+  LA+ +  
Sbjct: 480 MHMFSALINGLCFENRLEEACVYFQEMLDKGIRPPGQLFSNLKEALVEGGRISLAQEMAS 539

Query: 352 EMVESGLTP 360
           ++     TP
Sbjct: 540 KLDAIRKTP 548


>gi|125528410|gb|EAY76524.1| hypothetical protein OsI_04465 [Oryza sativa Indica Group]
          Length = 703

 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 102/412 (24%), Positives = 195/412 (47%), Gaps = 18/412 (4%)

Query: 103 SVLSLQRQKRSTYSYNPRVR------DLKLFARKLNDCDN-----TEEAFLRAITEIPHQ 151
           + L   R   S    NP +R      D  + AR+ +D D      +  AF R I   P+ 
Sbjct: 101 AALDAFRALPSILGCNPGIRSHNALLDAFVRARRFSDADAFFASLSHGAFGRRIA--PNL 158

Query: 152 PTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLAN 211
            T    L  L +     ++   F+ ++ + + P + I Y+  M  L    +      L +
Sbjct: 159 QTYNIVLRSLCARGDLDRAVTLFDSLRRRQVAP-DCITYSTLMCGLAKQDRLDHALDLLD 217

Query: 212 EMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKT-GLMPDEVTYSAILDVYAKS 270
           EM  + ++ D + Y+ ++    +   F++ +  ++++ K  G  P+  TY+ +LD   K 
Sbjct: 218 EMPRSGVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLCKF 277

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
           G+ +EV  ++ER VA+  +PD I + +L      SGD DG   V  E+   G+  +  +Y
Sbjct: 278 GRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMY 337

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
           N+L++   +AG+   A   +D    +GL  + +T   +IK    +    +A+ELW+ + +
Sbjct: 338 NSLVKGFCQAGRVQEAWKFWDSAGFAGLR-NLRTYNIMIKGLFDSGMVDEAIELWDLLEK 396

Query: 391 NKWPM-DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNV 449
           +   + D + + TL++     G   +A  +FE+ ++S   + D +SY++M+N   + G +
Sbjct: 397 DVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGK-QLDVFSYSSMINGLCNVGRL 455

Query: 450 DNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
            +A++++E+M + G   N      LI    +  R  D VR++    D G  P
Sbjct: 456 VDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSP 507



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 80/358 (22%), Positives = 175/358 (48%), Gaps = 4/358 (1%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN+ ++SL           L + +   ++  D ITYST++    + +  D A++  + M 
Sbjct: 161 YNIVLRSLCARGDLDRAVTLFDSLRRRQVAPDCITYSTLMCGLAKQDRLDHALDLLDEMP 220

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS-GWKPDPIAFSVLGKMFGESGDY 308
           ++G+ PD V Y+A+L    K+G+ E+V+ ++++ V   G +P+   ++V+     + G +
Sbjct: 221 RSGVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLCKFGRF 280

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
             +  V + M +  +QP+++ Y  L+  + ++G    A  ++ E++++GL  D     +L
Sbjct: 281 KEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSL 340

Query: 369 IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428
           +K + +A   ++A + W+         +   YN ++    D G+V+EA  L++ ++    
Sbjct: 341 VKGFCQAGRVQEAWKFWDSAGFAGL-RNLRTYNIMIKGLFDSGMVDEAIELWDLLEKDVA 399

Query: 429 CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLV 488
           C PD  ++  +++     G  + A  +FEE    G  ++V   + +I  L    R+ D V
Sbjct: 400 CIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGRLVDAV 459

Query: 489 RVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ--ANPKLVAFLNLIE 544
           +V+      G KP+  +   L+S       + D  ++ + +     +P ++ +  LI+
Sbjct: 460 KVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPTVITYNTLID 517



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/349 (25%), Positives = 159/349 (45%), Gaps = 32/349 (9%)

Query: 165 KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIEL---- 220
           KFW  + F         L  + T  YN+ +K L             + MV   IEL    
Sbjct: 355 KFWDSAGF-------AGLRNLRT--YNIMIKGL-----------FDSGMVDEAIELWDLL 394

Query: 221 --------DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK 272
                   D +T+ T+I    +    ++A   FE    +G   D  +YS++++     G+
Sbjct: 395 EKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGR 454

Query: 273 VEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNT 332
           + + + +YE+    G KP+   ++ L   F +         +  +M   G  P ++ YNT
Sbjct: 455 LVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPTVITYNT 514

Query: 333 LLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENK 392
           L++ + KA K   A S+  EMVE+G TPD  T  +LI+     +   DAL +W+++    
Sbjct: 515 LIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQILYKG 574

Query: 393 WPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNA 452
             +D +++N L++     G V+EA  +F DMK    C P+  +Y  +++     G +D A
Sbjct: 575 LKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYNTLMDGLYETGYIDKA 634

Query: 453 IELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
             L+  ++E G+  +++     I+ L    RI + +++    + RG+ P
Sbjct: 635 ATLWTSITEDGLEPDIISYNTRIKGLCSCDRIHEGIQLLDEVLSRGIIP 683



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/338 (21%), Positives = 154/338 (45%), Gaps = 38/338 (11%)

Query: 190 YNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERM 248
           YNV +  L +FGR F+ + ++   MV+N ++ D ITY  +I    R    D A   +  +
Sbjct: 267 YNVMLDGLCKFGR-FKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEI 325

Query: 249 YKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWK------------------- 289
            KTGL+ D   Y++++  + ++G+V+E    ++    +G +                   
Sbjct: 326 IKTGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLRNLRTYNIMIKGLFDSGMVD 385

Query: 290 ----------------PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTL 333
                           PD + F  L     ++G  +    + +E +  G Q ++  Y+++
Sbjct: 386 EAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSM 445

Query: 334 LEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKW 393
           +  +   G+   A  ++++M + G  P+     ALI  + +     DA+ ++ +M +N  
Sbjct: 446 INGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGC 505

Query: 394 PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAI 453
               I YNTL++        +EA  +  +M  + +  PD  +Y +++    S   +D+A+
Sbjct: 506 SPTVITYNTLIDGLCKAEKYQEASSVAREMVENGF-TPDITTYGSLIRGLFSDKKIDDAL 564

Query: 454 ELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
            +++++   G+ ++VM    LI  L  A ++D+ + VF
Sbjct: 565 SIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVF 602



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 79/180 (43%)

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382
           + PNL  YN +L ++   G    A +LFD +    + PD  T + L+    K      AL
Sbjct: 154 IAPNLQTYNIVLRSLCARGDLDRAVTLFDSLRRRQVAPDCITYSTLMCGLAKQDRLDHAL 213

Query: 383 ELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNI 442
           +L + M  +    D + YN LL  C   G  E+  R+++ +      +P+  +Y  ML+ 
Sbjct: 214 DLLDEMPRSGVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDG 273

Query: 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
               G      E++E M    +  +V+    LI  L ++  +D   RV+   I  G+  D
Sbjct: 274 LCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVID 333


>gi|449462483|ref|XP_004148970.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 917

 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 79/258 (30%), Positives = 132/258 (51%), Gaps = 7/258 (2%)

Query: 249 YKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY 308
           Y     P+ ++YS I+D   K G+ +E   L++   A G  PD I+++ L   F  SG +
Sbjct: 631 YGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKW 690

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
              +Y+  EM  +GVQP++  ++ L++ + K GK   A  L + M++ G  P+  T T L
Sbjct: 691 KDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTL 750

Query: 369 IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428
           +K         +A +L+ +M++     D + Y TL+      G ++ A  L + M LSD 
Sbjct: 751 VKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKM-LSDT 809

Query: 429 C------KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKAR 482
                  KPD  SY+ +++     G  D A ELF+EM  LGV  NV+  T LI    ++ 
Sbjct: 810 GQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSG 869

Query: 483 RIDDLVRVFGVSIDRGVK 500
           +++D   +F   +D+GV+
Sbjct: 870 KLEDAKHLFNEMVDQGVQ 887



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 93/323 (28%), Positives = 157/323 (48%), Gaps = 14/323 (4%)

Query: 176 WIKSQNLFPMETIFYNVT-MKSLRFGRQFQLIEQLANEMVSN------EIELDNITYSTI 228
           ++K Q L  M  +    T MK L      ++  +L   M+S+        + + I+YS I
Sbjct: 586 FLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSII 645

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
           I    +C   DEA E F+ M   G++PD ++Y++++  + +SGK ++   L+   V  G 
Sbjct: 646 IDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGV 705

Query: 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348
           +PD   FSVL  M  + G       +L+ M   G  PN V Y TL++ +    +   A  
Sbjct: 706 QPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQ 765

Query: 349 LFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN------KWPMDFILYNT 402
           LF +M + G  PD  T   L+K   +    K ALEL ++M  +       +  D I Y+ 
Sbjct: 766 LFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISYSI 825

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
           +++     G  +EA  LF++MK      P+  SYT++++ +   G +++A  LF EM + 
Sbjct: 826 IIDGLCKHGREDEARELFKEMKALGV-IPNVISYTSLIHGFCRSGKLEDAKHLFNEMVDQ 884

Query: 463 GVAINVMGCTCLIQCLGKARRID 485
           GV +N +  + +I    K  +ID
Sbjct: 885 GVQLNAVTYSVMIHGFCKEGQID 907



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 89/322 (27%), Positives = 152/322 (47%), Gaps = 27/322 (8%)

Query: 210 ANEMVSNEIE----LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
           ANE++   I+    LD +TYST+I      +   EA   F  M K G  PD +TY  ++ 
Sbjct: 73  ANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDAITYGTLMK 132

Query: 266 VYAKSGKVEEVLSLYERGV------ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMK 319
              ++G +   L L++  +          KP  I++S++     +    D  R + +EMK
Sbjct: 133 GLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFKEMK 192

Query: 320 SLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAK 379
           + G+ P+++ Y +L+     +GK   A+ LF+EM++ G+ PD  T   LI ++ K     
Sbjct: 193 AQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQPDVTTSGVLIDMFCKEGKVI 252

Query: 380 DALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAM 439
           +A EL E M      +D + Y+TL+        + EA +LF  MK    C+PD  +Y  +
Sbjct: 253 EANELLEVMVHRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKKLG-CRPDAIAYGTL 311

Query: 440 LNIYGSGGNVDNAIELFEEM----SELGVAI---NVMGCTCLIQCLGKARRIDDLVRVFG 492
           +      G ++ A+ L +EM    S+ G+     +V   + LI  L K  ++ +   +  
Sbjct: 312 MKGLCQTGKINIALHLHQEMLNDTSQYGIKCIRPDVTTSSMLIDILCKEGKVIEANELLE 371

Query: 493 VSIDRGVKPDDRLCGCLLSVVS 514
           V I R         GC+L +V+
Sbjct: 372 VMIQR---------GCILDIVT 384



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 92/343 (26%), Positives = 153/343 (44%), Gaps = 50/343 (14%)

Query: 210 ANEMVSNEIE----LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
           ANE++   I+    LD +TYST+I      +   EA   F  M K G  PD +TY  ++ 
Sbjct: 366 ANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDAITYGTLMK 425

Query: 266 VYAKSGKVEEVLSLYERGV------ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMK 319
              ++G +   L L++  +          KP  I++S++     +    D  R + +EMK
Sbjct: 426 GLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFEEMK 485

Query: 320 SLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAK 379
           + G+ P+++ Y TL+     +GK   A+ LF+EM++ G+ PD  T + LI +  K     
Sbjct: 486 AQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVI 545

Query: 380 DALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK--------------- 424
           +A +L E + +    +D +   TL+        + +A +LF  M+               
Sbjct: 546 EANKLLEVVIQRGCILDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLM 605

Query: 425 -------------------LSDY------CKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
                              LSD       CKP+  SY+ +++     G  D A ELF+EM
Sbjct: 606 KGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEM 665

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
             LGV  +V+  T LI    ++ +  D   +F   +D GV+PD
Sbjct: 666 KALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPD 708



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 92/329 (27%), Positives = 152/329 (46%), Gaps = 13/329 (3%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSN------EIELDNITYSTIITCAKRCNLFD 239
           + I Y   MK L       +  QL  EM+++      + +   I+YS II    +    D
Sbjct: 416 DAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRRED 475

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           EA E FE M   G+MPD ++Y+ ++  +  SGK E+   L+   +  G +PD    SVL 
Sbjct: 476 EARELFEEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLI 535

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
            M  + G       +L+ +   G   ++V   TL++ +    +   A  LF +M + G  
Sbjct: 536 DMLCKKGKVIEANKLLEVVIQRGCILDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCM 595

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDF------ILYNTLLNMCADIGLV 413
           P+  T   L+K   ++   K ALEL + M  +  P         I Y+ +++     G  
Sbjct: 596 PNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGRE 655

Query: 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTC 473
           +EA  LF++MK      PD  SYT++++ +   G   +A  LF EM ++GV  +V   + 
Sbjct: 656 DEARELFKEMKALGV-IPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSV 714

Query: 474 LIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           LI  L K  ++ +   +  V I RG  P+
Sbjct: 715 LIDMLCKEGKVIEANELLEVMIQRGCIPN 743



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 84/311 (27%), Positives = 140/311 (45%), Gaps = 14/311 (4%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERM------YKTGLMPDEVTYSAILDVYAKSGKVE 274
           D ITY T++    +    + A++  + M      Y     P  ++YS I+D   K  + +
Sbjct: 123 DAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRRED 182

Query: 275 EVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLL 334
           E   L++   A G  PD I+++ L   F  SG ++  + +  EM  +G+QP++     L+
Sbjct: 183 EARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQPDVTTSGVLI 242

Query: 335 EAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWP 394
           +   K GK   A  L + MV  G   D  T + LIK         +A +L+  M++    
Sbjct: 243 DMFCKEGKVIEANELLEVMVHRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKKLGCR 302

Query: 395 MDFILYNTLLNMCADIGLVEEAERLFEDM--KLSDY---C-KPDNYSYTAMLNIYGSGGN 448
            D I Y TL+      G +  A  L ++M    S Y   C +PD  + + +++I    G 
Sbjct: 303 PDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCIRPDVTTSSMLIDILCKEGK 362

Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGC 508
           V  A EL E M + G  ++++  + LI+ L    RI +   +F      G +PD    G 
Sbjct: 363 VIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDAITYGT 422

Query: 509 LLSVVSLCETS 519
           L+    LC+T 
Sbjct: 423 LMK--GLCQTG 431



 Score = 97.4 bits (241), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 143/315 (45%), Gaps = 18/315 (5%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTY---------SAILDVYAKSG 271
           D+ T++ +I C       +E +     + + G +PD VTY         S ++D+  K G
Sbjct: 9   DSFTFNILINCLCNVKRVNEGLAAMAGIMRRGYIPDIVTYSIRPDVTTSSMLIDILCKEG 68

Query: 272 KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYN 331
           KV E   L E  +  G   D + +S L K            ++   M+ LG +P+ + Y 
Sbjct: 69  KVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDAITYG 128

Query: 332 TLLEAMGKAGKPGLARSLFDEMV-ESG-----LTPDEKTLTALIKIYGKARWAKDALELW 385
           TL++ + + G   +A  L  EM+ ++G       P   + + +I    K R   +A EL+
Sbjct: 129 TLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELF 188

Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445
           + M+      D I Y +L++     G  E+A+ LF +M L    +PD  +   +++++  
Sbjct: 189 KEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEM-LDVGIQPDVTTSGVLIDMFCK 247

Query: 446 GGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRL 505
            G V  A EL E M   G  ++++  + LI+ L    RI +  ++F      G +PD   
Sbjct: 248 EGKVIEANELLEVMVHRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKKLGCRPDAIA 307

Query: 506 CGCLLSVVSLCETSE 520
            G L+    LC+T +
Sbjct: 308 YGTLMK--GLCQTGK 320



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 152/343 (44%), Gaps = 15/343 (4%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F  +K+Q + P + I Y   +       +++  + L NEM+   I+ D  T   +I   
Sbjct: 187 LFKEMKAQGMMP-DVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQPDVTTSGVLIDMF 245

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +     EA E  E M   G + D VTYS ++       ++ E   L+      G +PD 
Sbjct: 246 CKEGKVIEANELLEVMVHRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKKLGCRPDA 305

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEM----KSLGVQ---PNLVVYNTLLEAMGKAGKPGL 345
           IA+  L K   ++G  +   ++ QEM       G++   P++   + L++ + K GK   
Sbjct: 306 IAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCIRPDVTTSSMLIDILCKEGKVIE 365

Query: 346 ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405
           A  L + M++ G   D  T + LIK         +A  L+  M++     D I Y TL+ 
Sbjct: 366 ANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDAITYGTLMK 425

Query: 406 MCADIGLVEEAERLFEDMKLSDY------CKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
                G +  A +L ++M L+D       CKP   SY+ +++        D A ELFEEM
Sbjct: 426 GLCQTGNINIALQLHQEM-LNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFEEM 484

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
              G+  +V+  T LI     + + +    +F   +D G++PD
Sbjct: 485 KAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPD 527


>gi|302781560|ref|XP_002972554.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
 gi|300160021|gb|EFJ26640.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
          Length = 581

 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 93/337 (27%), Positives = 154/337 (45%), Gaps = 18/337 (5%)

Query: 181 NLFPMETIF----------YNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTII 229
           NL P++  F          YN+ ++SL R G   + +E    EM  + +    +TY+TII
Sbjct: 29  NLCPLKFFFVRSSSRSVADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTII 88

Query: 230 TCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWK 289
               + N     +E FE + K G  PD VTY+ ++D   K+G +EE   L+    + G  
Sbjct: 89  NGLCKSNELGAGMELFEELVKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCV 148

Query: 290 PDPIAFSVLGKMFGESGDYDGIRYVLQEM--KSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
           P+ + +SVL     + G  D  R ++QEM  KS  V PN++ YN+ L+ + K      A 
Sbjct: 149 PNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEAC 208

Query: 348 SLFDEMVESGL--TPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405
            L   + +  L  +PD  T + LI    K     +A    + M    +  + + YN L+N
Sbjct: 209 ELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACN--DDMIAGGYVPNVVTYNALVN 266

Query: 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
                  +E A  + E M +     PD  +Y+ +++ +     VD A+EL   M+  G  
Sbjct: 267 GLCKADKMERAHAMIESM-VDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCT 325

Query: 466 INVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            NV+    +I  L K+ R  +  ++     +R + PD
Sbjct: 326 PNVVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPD 362



 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 165/348 (47%), Gaps = 5/348 (1%)

Query: 131 LNDCDNTEEAF---LRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMET 187
           L  C  T+EA    + A   +P+  T    +  L      ++++     +  + + P + 
Sbjct: 235 LCKCGQTDEACNDDMIAGGYVPNVVTYNALVNGLCKADKMERAHAMIESMVDKGVTP-DV 293

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           I Y+V + +     +     +L + M S     + +T+++II    + +   EA +   +
Sbjct: 294 ITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQIALQ 353

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           +Y   L+PD+VT++ ++    K+G  E+  +L+E  VA   +PD + F  L     ++G 
Sbjct: 354 VYNRMLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNMQPDVMTFGALIDGLCKAGQ 413

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
            +  R +L  M +LGV PN+V YN L+  + K+G+        +EMV SG  P+  T  +
Sbjct: 414 VEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSGCVPESMTYGS 473

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           L+    +A    DAL+L  +++   W  D + YN L++     G  E+A  + E+M    
Sbjct: 474 LVYALCRASRTDDALQLVSKLKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKG 533

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLI 475
           + +PD++++ A        GN+   +EL   +   G+  +   C+ ++
Sbjct: 534 H-QPDSFTFAACFGGLHRSGNLAGTMELLRVVLAKGMLPDATTCSSIL 580



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 143/317 (45%), Gaps = 38/317 (11%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D +T+ST+I    +C   DEA    + M   G +P+ VTY+A+++   K+ K+E   ++ 
Sbjct: 224 DTVTFSTLIDGLCKCGQTDEACN--DDMIAGGYVPNVVTYNALVNGLCKADKMERAHAMI 281

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
           E  V  G  PD I +SVL   F ++   D    +L  M S G  PN+V +N++++ + K+
Sbjct: 282 ESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKS 341

Query: 341 GKPG-----------------------------------LARSLFDEMVESGLTPDEKTL 365
            + G                                    A +LF+EMV   + PD  T 
Sbjct: 342 DRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNMQPDVMTF 401

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
            ALI    KA   + A ++ + M     P + + YN L++     G +EE     E+M +
Sbjct: 402 GALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSGRIEEPCEFLEEM-V 460

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
           S  C P++ +Y +++         D+A++L  ++   G   + +    L+  L K+ + +
Sbjct: 461 SSGCVPESMTYGSLVYALCRASRTDDALQLVSKLKSFGWDPDTVTYNILVDGLWKSGKTE 520

Query: 486 DLVRVFGVSIDRGVKPD 502
             + V    + +G +PD
Sbjct: 521 QAITVLEEMVGKGHQPD 537



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 94/374 (25%), Positives = 157/374 (41%), Gaps = 46/374 (12%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + YN  + SL      +   +L   M S     + +TYS +I    +    DEA E  
Sbjct: 115 DVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGLCKVGRIDEARELI 174

Query: 246 ERMYKTG--LMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG---WKPDPIAFSVLGK 300
           + M +    ++P+ +TY++ LD   K     E   L  R +  G     PD + FS L  
Sbjct: 175 QEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELM-RSLRDGSLRVSPDTVTFSTLID 233

Query: 301 MFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTP 360
              + G  D       +M + G  PN+V YN L+  + KA K   A ++ + MV+ G+TP
Sbjct: 234 GLCKCGQTD--EACNDDMIAGGYVPNVVTYNALVNGLCKADKMERAHAMIESMVDKGVTP 291

Query: 361 DEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN-MC------------ 407
           D  T + L+  + KA    +ALEL   M       + + +N++++ +C            
Sbjct: 292 DVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQIA 351

Query: 408 ----------------------ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445
                                    G  E+A  LFE+M   +  +PD  ++ A+++    
Sbjct: 352 LQVYNRMLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNM-QPDVMTFGALIDGLCK 410

Query: 446 GGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRL 505
            G V+ A ++ + M  LGV  NV+    L+  L K+ RI++        +  G  P+   
Sbjct: 411 AGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSGCVPESMT 470

Query: 506 CGCLLSVVSLCETS 519
            G L  V +LC  S
Sbjct: 471 YGSL--VYALCRAS 482



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 80/153 (52%), Gaps = 2/153 (1%)

Query: 184 PMETIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
           P   + YNV +  L + GR  +  E L  EMVS+    +++TY +++    R +  D+A+
Sbjct: 430 PPNVVTYNVLVHGLCKSGRIEEPCEFL-EEMVSSGCVPESMTYGSLVYALCRASRTDDAL 488

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
           +   ++   G  PD VTY+ ++D   KSGK E+ +++ E  V  G +PD   F+      
Sbjct: 489 QLVSKLKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFGGL 548

Query: 303 GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLE 335
             SG+  G   +L+ + + G+ P+    +++L+
Sbjct: 549 HRSGNLAGTMELLRVVLAKGMLPDATTCSSILD 581


>gi|225189439|emb|CAR70003.1| pentatricopeptide repeat(PPR)-containing protein At1g12700
           [Arabidopsis thaliana]
          Length = 602

 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 157/317 (49%), Gaps = 1/317 (0%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + YN  +  +       L   +  +M    ++ D  TYSTII    R    D AI  F
Sbjct: 192 DMVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLF 251

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           + M   G+    VTY++++    K+GK  +   L +  V+    P+ I F+VL  +F + 
Sbjct: 252 KEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKE 311

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G       + +EM + G+ PN++ YNTL++      +   A ++ D MV +  +PD  T 
Sbjct: 312 GKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTF 371

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
           T+LIK Y   +   D ++++  + +     + + Y+ L+      G ++ AE LF++M +
Sbjct: 372 TSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEM-V 430

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
           S    PD  +Y  +L+     G ++ A+E+FE++ +  + + ++  T +I+ + K  +++
Sbjct: 431 SHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVE 490

Query: 486 DLVRVFGVSIDRGVKPD 502
           D   +F     +GVKP+
Sbjct: 491 DAWNLFCSLPCKGVKPN 507



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 92/388 (23%), Positives = 173/388 (44%), Gaps = 42/388 (10%)

Query: 201 RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTY 260
           +QF L+     ++  N I  +  T + +I C  RC     A     ++ K G  PD  T+
Sbjct: 102 KQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTF 161

Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD----YDGIR---- 312
           + +++     GKV + + L +R V +G +PD + ++ +      SGD    +D +R    
Sbjct: 162 NTLINGLCLEGKVSKAVVLVDRMVENGCQPDMVTYNSIVNGICRSGDTSLAFDMLRKMEE 221

Query: 313 ---------------------------YVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGL 345
                                       + +EM++ G++ ++V YN+L+  + KAGK   
Sbjct: 222 RNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWND 281

Query: 346 ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405
              L  +MV   + P+  T   L+ ++ K    ++A EL++ M       + I YNTL++
Sbjct: 282 GALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMD 341

Query: 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
                  + EA  +  D+ + + C PD  ++T+++  Y     VD+ +++F  +S+ G+ 
Sbjct: 342 GYCMQNRLSEANNML-DLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLV 400

Query: 466 INVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETS--EDVG 523
            N +  + L+Q   ++ +I     +F   +  GV PD    G LL    LC+    E   
Sbjct: 401 ANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLD--GLCDNGKLEKAL 458

Query: 524 KVITCLQQANPKL--VAFLNLIEDNSTG 549
           ++   LQ++   L  V +  +IE    G
Sbjct: 459 EIFEDLQKSKMDLGIVMYTTIIEGMCKG 486



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 122/259 (47%), Gaps = 1/259 (0%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           I YN  M       +      + + MV N+   D +T++++I         D+ ++ F  
Sbjct: 334 ITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRN 393

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           + K GL+ + VTYS ++  + +SGK++    L++  V+ G  PD + + +L     ++G 
Sbjct: 394 ISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGK 453

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
            +    + ++++   +   +V+Y T++E M K GK   A +LF  +   G+ P+  T T 
Sbjct: 454 LEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTV 513

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           +I    K     +A  L  +M E+    +   YNTL+      G +  + +L E+MK   
Sbjct: 514 MISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCG 573

Query: 428 YCKPDNYSYTAMLNIYGSG 446
           +   D  S   ++++  SG
Sbjct: 574 F-SADASSIKMVIDMLLSG 591



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 95/197 (48%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           + Y++ ++      + +L E+L  EMVS+ +  D +TY  ++         ++A+E FE 
Sbjct: 404 VTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFED 463

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           + K+ +    V Y+ I++   K GKVE+  +L+      G KP+ + ++V+     + G 
Sbjct: 464 LQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGS 523

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
                 +L++M+  G  PN   YNTL+ A  + G    +  L +EM   G + D  ++  
Sbjct: 524 LSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKM 583

Query: 368 LIKIYGKARWAKDALEL 384
           +I +       K  L++
Sbjct: 584 VIDMLLSGELDKSFLDM 600



 Score = 42.0 bits (97), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 30/154 (19%), Positives = 68/154 (44%), Gaps = 1/154 (0%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F  + S  + P + + Y + +  L    + +   ++  ++  ++++L  + Y+TII   
Sbjct: 425 LFQEMVSHGVLP-DVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGM 483

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +    ++A   F  +   G+ P+ +TY+ ++    K G + E   L  +    G  P+ 
Sbjct: 484 CKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPND 543

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
             ++ L +     GD      +++EMKS G   +
Sbjct: 544 CTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSAD 577


>gi|297844992|ref|XP_002890377.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336219|gb|EFH66636.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 537

 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 167/337 (49%), Gaps = 5/337 (1%)

Query: 168 QKSYFFFNWIKSQNLFPMETIF-YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
            +S  FFNW  S++ +  ++   YN  +      RQF L   L + M S  +E+   T++
Sbjct: 131 HQSLAFFNWATSRDDYDQKSPHPYNEMIDLAGKVRQFDLAWHLIDLMKSRNVEISIETFT 190

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
            +I    R  L  EA+  F RM   G +PD++ +S ++   ++  +  E  S ++  +  
Sbjct: 191 ILIRRYVRAGLASEAVHCFNRMEDYGCVPDQIAFSIVISNLSRKRRASEAQSFFD-SLKD 249

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
            ++PD I ++ L + +  +G+      V ++MK  G++PN+  Y+ +++A+ + G+   A
Sbjct: 250 RFEPDVIVYTNLVRGWCRAGEISEAEKVFKDMKLAGIEPNVYTYSIVIDALCRCGQISRA 309

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL-N 405
             +F +M++SG  P+  T   L++++ KA   +  L+++ +M++     D I YN L+  
Sbjct: 310 HDVFADMLDSGCAPNAITFNNLMRVHVKAGRPEKVLQVYNQMKKLGCEPDTITYNFLIET 369

Query: 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
            C D  L E A ++   M +   C+ +  ++  +        +V+ A  ++ +M E    
Sbjct: 370 HCRDENL-ENAVKVLNTM-IKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKCE 427

Query: 466 INVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            N +    L++    ++  D ++++     D+ V+P+
Sbjct: 428 PNTVTYNILMRMFAGSKSTDMVLKMKKDMDDKEVEPN 464



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 66/293 (22%), Positives = 130/293 (44%), Gaps = 2/293 (0%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           FF+ +K +  F  + I Y   ++      +    E++  +M    IE +  TYS +I   
Sbjct: 243 FFDSLKDR--FEPDVIVYTNLVRGWCRAGEISEAEKVFKDMKLAGIEPNVYTYSIVIDAL 300

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            RC     A + F  M  +G  P+ +T++ ++ V+ K+G+ E+VL +Y +    G +PD 
Sbjct: 301 CRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRPEKVLQVYNQMKKLGCEPDT 360

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           I ++ L +      + +    VL  M     + N   +NT+   + K      A  ++ +
Sbjct: 361 ITYNFLIETHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSK 420

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M+E+   P+  T   L++++  ++     L++ + M + +   +   Y  L+ M   +G 
Sbjct: 421 MMEAKCEPNTVTYNILMRMFAGSKSTDMVLKMKKDMDDKEVEPNVNTYRLLVTMFCGMGH 480

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
              A +LF++M       P    Y  +L      G +    EL E+M + G+ 
Sbjct: 481 WNNAYKLFKEMVEEKCLTPSLSLYEMVLAQLRRAGQLKKHEELVEKMIQKGLV 533



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 72/319 (22%), Positives = 144/319 (45%), Gaps = 22/319 (6%)

Query: 258 VTYSAILDVYAKSGKVEEVLSLYERGVASGW--------KPDPIAFSVLGKMFGESGDYD 309
           ++ S +  V  K G V   + L++      W        +  P  ++ +  + G+   +D
Sbjct: 109 ISPSVVRCVIEKCGSVRHGIPLHQSLAFFNWATSRDDYDQKSPHPYNEMIDLAGKVRQFD 168

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
              +++  MKS  V+ ++  +  L+    +AG    A   F+ M + G  PD+   + +I
Sbjct: 169 LAWHLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHCFNRMEDYGCVPDQIAFSIVI 228

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
               + R A +A   ++ +++   P D I+Y  L+      G + EAE++F+DMKL+   
Sbjct: 229 SNLSRKRRASEAQSFFDSLKDRFEP-DVIVYTNLVRGWCRAGEISEAEKVFKDMKLAGI- 286

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
           +P+ Y+Y+ +++     G +  A ++F +M + G A N +    L++   KA R + +++
Sbjct: 287 EPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRPEKVLQ 346

Query: 490 VFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTG 549
           V+      G +PD      L+      E  E+  KV+  + +            E N++ 
Sbjct: 347 VYNQMKKLGCEPDTITYNFLIETHCRDENLENAVKVLNTMIKKK---------CEVNAST 397

Query: 550 FENIKEEFRNVIKDTEVDA 568
           F  I   FR + K  +V+ 
Sbjct: 398 FNTI---FRYIEKKRDVNG 413


>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
 gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 141/285 (49%), Gaps = 1/285 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D +TYST+I    +  L +EA++ F  M   G+ P  V+Y++++       + +E  ++ 
Sbjct: 230 DVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAML 289

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
               +    PD + FS+L  +F + G+    + VL+ M  +GV+PN++ YN+L+      
Sbjct: 290 NEMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQ 349

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
            +   AR LFD M+  G  PD  + + LI  Y   +   +A +L+  M       + + Y
Sbjct: 350 MEVVEARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSY 409

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
            TL++    +G + EA  LF+DM  + Y  PD  +Y+ +L  +   G +  A  LF  M 
Sbjct: 410 TTLIHAFCQLGKLREARELFKDMHTNGYL-PDLCTYSVLLEGFCKQGYLGKAFRLFRAMQ 468

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRL 505
              +  N++  T LI  + K+  ++   ++F      G++PD ++
Sbjct: 469 GTYLKPNLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPDVQI 513



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 91/368 (24%), Positives = 173/368 (47%), Gaps = 7/368 (1%)

Query: 140 AFLRAITEIPHQPTRENALLILNSL---KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKS 196
             ++ + E+  QP       +++SL   +   ++   F+++K++ + P    + ++    
Sbjct: 217 GLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGL 276

Query: 197 LRFGRQFQLIEQLANEMVSNEIELDNITYSTIITC-AKRCNLFDEAIEWFERMYKTGLMP 255
             F R ++    + NEM S  I  D +T+S +I    K  N+  EA    + M + G+ P
Sbjct: 277 CSFSR-WKEASAMLNEMTSLNIMPDIVTFSLLIDIFCKEGNVL-EAQGVLKTMTEMGVEP 334

Query: 256 DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVL 315
           + +TY++++  Y+   +V E   L++  +  G KPD  ++S+L   +      D  + + 
Sbjct: 335 NVITYNSLMHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLF 394

Query: 316 QEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA 375
            EM   G+ PN V Y TL+ A  + GK   AR LF +M  +G  PD  T + L++ + K 
Sbjct: 395 NEMIHQGLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQ 454

Query: 376 RWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYS 435
            +   A  L+  M+      + ++Y  L++     G +  A +LF ++ +    +PD   
Sbjct: 455 GYLGKAFRLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHARKLFSELFVHGL-QPDVQI 513

Query: 436 YTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSI 495
           YT ++N     G +D A+E F +M E G   N      +I+   + +     V++ G   
Sbjct: 514 YTTIINGLCKEGLLDEALEAFRKMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMR 573

Query: 496 DRGVKPDD 503
           D+G   D+
Sbjct: 574 DKGFVADE 581



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 157/354 (44%), Gaps = 39/354 (11%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           FN +  +   P    F  +    +R  + +  +  L+ +M    +  +  T + +I C  
Sbjct: 78  FNHMLHRKPLPCIIQFNKLLSAIVRMRQYYDAVISLSKQMELAGLSPNTCTLNILINCFC 137

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
                D       ++ K GL P  +T++ +++   K+G+  + L L++  VA G +PD  
Sbjct: 138 LMQHVDLGFSVLAKVIKLGLQPTIITFTTLINGLCKAGEFAQALELFDDMVARGCQPDVY 197

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM---------------- 337
            ++ +     + G+      ++++M  +G QP++V Y+TL++++                
Sbjct: 198 TYTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEALDIFSYM 257

Query: 338 -GKAGKP----------GL--------ARSLFDEMVESGLTPDEKTLTALIKIYGKARWA 378
             K   P          GL        A ++ +EM    + PD  T + LI I+ K    
Sbjct: 258 KAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLNIMPDIVTFSLLIDIFCKEGNV 317

Query: 379 KDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTA 438
            +A  + + M E     + I YN+L++  +    V EA +LF D+ ++  CKPD +SY+ 
Sbjct: 318 LEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEARKLF-DVMITRGCKPDVFSYSI 376

Query: 439 MLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC---LGKARRIDDLVR 489
           ++N Y     +D A +LF EM   G+  N +  T LI     LGK R   +L +
Sbjct: 377 LINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREARELFK 430



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 77/192 (40%), Gaps = 1/192 (0%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            FN +  Q L P  T+ Y   + +     + +   +L  +M +N    D  TYS ++   
Sbjct: 393 LFNEMIHQGLTP-NTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGF 451

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +     +A   F  M  T L P+ V Y+ ++D   KSG +     L+      G +PD 
Sbjct: 452 CKQGYLGKAFRLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPDV 511

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
             ++ +     + G  D      ++M+  G  PN   YN ++    +      A  L  E
Sbjct: 512 QIYTTIINGLCKEGLLDEALEAFRKMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGE 571

Query: 353 MVESGLTPDEKT 364
           M + G   DE T
Sbjct: 572 MRDKGFVADEGT 583


>gi|15221515|ref|NP_176447.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213223|sp|Q9SXD8.1|PPR90_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62590
 gi|5454201|gb|AAD43616.1|AC005698_15 T3P18.15 [Arabidopsis thaliana]
 gi|332195860|gb|AEE33981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 634

 Score =  122 bits (306), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 96/355 (27%), Positives = 169/355 (47%), Gaps = 9/355 (2%)

Query: 192 VTMKSLR----FGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           VT+ SL      G++      L ++MV      D IT++T+I      N   EA+   +R
Sbjct: 156 VTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDR 215

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M + G  P+ VTY  +++   K G  +  L+L  +  A+  + D + F+ +     +   
Sbjct: 216 MVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRH 275

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
            D    + +EM++ G++PN+V Y++L+  +   G+   A  L  +M+E  + P+  T  A
Sbjct: 276 VDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNA 335

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           LI  + K     +A +L++ M +     D   YN+L+N       +++A+++FE M +S 
Sbjct: 336 LIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFM-VSK 394

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
            C PD  +Y  ++  +     V++  ELF EMS  G+  + +  T LIQ L      D+ 
Sbjct: 395 DCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNA 454

Query: 488 VRVFGVSIDRGVKPDDRLCGCLLSVVSLCETS--EDVGKVITCLQQANPKLVAFL 540
            +VF   +  GV PD      LL    LC     E   +V   +Q++  KL  ++
Sbjct: 455 QKVFKQMVSDGVPPDIMTYSILLD--GLCNNGKLEKALEVFDYMQKSEIKLDIYI 507



 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 152/315 (48%), Gaps = 1/315 (0%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           + Y V +  L       L   L N+M + +IE D + ++TII    +    D+A+  F+ 
Sbjct: 226 VTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKE 285

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M   G+ P+ VTYS+++      G+  +   L    +     P+ + F+ L   F + G 
Sbjct: 286 METKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGK 345

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
           +     +  +M    + P++  YN+L+       +   A+ +F+ MV     PD  T   
Sbjct: 346 FVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNT 405

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           LIK + K++  +D  EL+  M       D + Y TL+      G  + A+++F+ M +SD
Sbjct: 406 LIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQM-VSD 464

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
              PD  +Y+ +L+   + G ++ A+E+F+ M +  + +++   T +I+ + KA ++DD 
Sbjct: 465 GVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDG 524

Query: 488 VRVFGVSIDRGVKPD 502
             +F     +GVKP+
Sbjct: 525 WDLFCSLSLKGVKPN 539



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 83/297 (27%), Positives = 141/297 (47%), Gaps = 1/297 (0%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + +N  + SL   R       L  EM +  I  + +TYS++I+C      + +A +  
Sbjct: 259 DVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLL 318

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
             M +  + P+ VT++A++D + K GK  E   LY+  +     PD   ++ L   F   
Sbjct: 319 SDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMH 378

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
              D  + + + M S    P++V YNTL++   K+ +      LF EM   GL  D  T 
Sbjct: 379 DRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTY 438

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
           T LI+         +A +++++M  +  P D + Y+ LL+   + G +E+A  +F+ M+ 
Sbjct: 439 TTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQK 498

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKAR 482
           S+  K D Y YT M+      G VD+  +LF  +S  GV  NV+    +I  L   R
Sbjct: 499 SEI-KLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKR 554



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/314 (24%), Positives = 155/314 (49%), Gaps = 3/314 (0%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN+ +       Q  L   L  +M+    E   +T S+++          +A+   ++M 
Sbjct: 123 YNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMV 182

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
           + G  PD +T++ ++       K  E ++L +R V  G +P+ + + V+     + GD D
Sbjct: 183 EMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTD 242

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               +L +M++  ++ ++V++NT+++++ K      A +LF EM   G+ P+  T ++LI
Sbjct: 243 LALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLI 302

Query: 370 K-IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428
             +    RW+ DA +L   M E K   + + +N L++     G   EAE+L++DM +   
Sbjct: 303 SCLCSYGRWS-DASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDM-IKRS 360

Query: 429 CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLV 488
             PD ++Y +++N +     +D A ++FE M       +V+    LI+   K++R++D  
Sbjct: 361 IDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGT 420

Query: 489 RVFGVSIDRGVKPD 502
            +F     RG+  D
Sbjct: 421 ELFREMSHRGLVGD 434



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 145/311 (46%), Gaps = 2/311 (0%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           P+  T  + +  L S   W  +    + +  + + P   + +N  + +     +F   E+
Sbjct: 293 PNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINP-NLVTFNALIDAFVKEGKFVEAEK 351

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L ++M+   I+ D  TY++++      +  D+A + FE M      PD VTY+ ++  + 
Sbjct: 352 LYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFC 411

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           KS +VE+   L+      G   D + ++ L +     GD D  + V ++M S GV P+++
Sbjct: 412 KSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIM 471

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            Y+ LL+ +   GK   A  +FD M +S +  D    T +I+   KA    D  +L+  +
Sbjct: 472 TYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSL 531

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
                  + + YNT+++      L++EA  L + MK  D   P++ +Y  ++  +   G+
Sbjct: 532 SLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMK-EDGPLPNSGTYNTLIRAHLRDGD 590

Query: 449 VDNAIELFEEM 459
              + EL  EM
Sbjct: 591 KAASAELIREM 601



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 105/251 (41%), Gaps = 36/251 (14%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           K+   F ++ S++ FP + + YN  +K     ++ +   +L  EM    +  D +TY+T+
Sbjct: 383 KAKQMFEFMVSKDCFP-DVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTL 441

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
           I         D A + F++M   G+ PD +TYS +LD    +GK+E+ L +++    S  
Sbjct: 442 IQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEI 501

Query: 289 KPDPIAFSVLGKMFGESGDYD------------GIR-----------------------Y 313
           K D   ++ + +   ++G  D            G++                        
Sbjct: 502 KLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYA 561

Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYG 373
           +L++MK  G  PN   YNTL+ A  + G    +  L  EM       D  T+  +  +  
Sbjct: 562 LLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVANMLH 621

Query: 374 KARWAKDALEL 384
             R  K  L++
Sbjct: 622 DGRLDKSFLDM 632


>gi|255661200|gb|ACU25769.1| pentatricopeptide repeat-containing protein [Rhaphithamnus
           venustus]
          Length = 426

 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 85/283 (30%), Positives = 145/283 (51%), Gaps = 7/283 (2%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D  TYST+IT   +  LFD+A+ W ++M +  +  D V YS ++++  K     + +S++
Sbjct: 8   DKYTYSTLITYFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDFSKAISIF 67

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
            R   SG  PD +A++ +  +FG++  +   R ++ EM+  G+ P+ V Y+TLL    + 
Sbjct: 68  SRLKRSGITPDLVAYNSMINVFGKAKLFREARSLISEMRMAGIMPDTVSYSTLLTMYVEN 127

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
            K   A S+F EM E     +  T   +I +YG+   AK+A +L+  MR+     + + Y
Sbjct: 128 QKFLEALSVFAEMREIKCLLNLITCNVMIDVYGQLDMAKEADKLFWGMRKXGIEPNVVSY 187

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           NTLL +  D  L  EA  LF  M+  +  + +  +Y  M+ IYG     + A  L +EM 
Sbjct: 188 NTLLRVYGDAELFGEAIHLFRLMQRKN-IEQNVVTYNTMMMIYGKTLEHEKANNLIQEMH 246

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVF------GVSIDR 497
             G+  + +  + +I   GK  ++D    +F      GV ID+
Sbjct: 247 NRGIEPDAITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQ 289



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/364 (23%), Positives = 169/364 (46%), Gaps = 6/364 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K   + P + + YN  +      + F+    L +EM    I  D ++YS
Sbjct: 60  FSKAISIFSRLKRSGITP-DLVAYNSMINVFGKAKLFREARSLISEMRMAGIMPDTVSYS 118

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + + +T + ++DVY +    +E   L+      
Sbjct: 119 TLLTMYVENQKFLEALSVFAEMREIKCLLNLITCNVMIDVYGQLDMAKEADKLFWGMRKX 178

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   ++ N+V YNT++   GK  +   A
Sbjct: 179 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKA 238

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ PD  T + +I I+GK      A  L++++R +   +D ILY T++  
Sbjct: 239 NNLIQEMHNRGIEPDAITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILYQTMIVA 298

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K     +PDN      ++I    G ++ A  +F +  + G   
Sbjct: 299 YERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATWVFRQAIDAGEVK 353

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           ++     +I    K ++  ++V VF      G  PD  +   +L+        E      
Sbjct: 354 DITVFERMINLFSKYKKYSNVVEVFEKMRGLGYFPDSNVIALVLNAYGKLREFEKANDAY 413

Query: 527 TCLQ 530
           T +Q
Sbjct: 414 TEMQ 417



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/285 (25%), Positives = 145/285 (50%), Gaps = 3/285 (1%)

Query: 199 FGRQFQLIEQLA--NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPD 256
           FG++    + L+   +M  + +  D + YS +I  +++   F +AI  F R+ ++G+ PD
Sbjct: 19  FGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDFSKAISIFSRLKRSGITPD 78

Query: 257 EVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQ 316
            V Y+++++V+ K+    E  SL      +G  PD +++S L  M+ E+  +     V  
Sbjct: 79  LVAYNSMINVFGKAKLFREARSLISEMRMAGIMPDTVSYSTLLTMYVENQKFLEALSVFA 138

Query: 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
           EM+ +    NL+  N +++  G+      A  LF  M + G+ P+  +   L+++YG A 
Sbjct: 139 EMREIKCLLNLITCNVMIDVYGQLDMAKEADKLFWGMRKXGIEPNVVSYNTLLRVYGDAE 198

Query: 377 WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY 436
              +A+ L+  M+      + + YNT++ +       E+A  L ++M  +   +PD  +Y
Sbjct: 199 LFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANNLIQEMH-NRGIEPDAITY 257

Query: 437 TAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
           + +++I+G  G +D A  LF+++   GV I+ +    +I    +A
Sbjct: 258 STIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILYQTMIVAYERA 302



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 128/261 (49%), Gaps = 1/261 (0%)

Query: 252 GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGI 311
            L PD+ TYS ++  + K G  ++ LS  ++        D + +S L ++  +  D+   
Sbjct: 4   ALSPDKYTYSTLITYFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDFSKA 63

Query: 312 RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371
             +   +K  G+ P+LV YN+++   GKA     ARSL  EM  +G+ PD  + + L+ +
Sbjct: 64  ISIFSRLKRSGITPDLVAYNSMINVFGKAKLFREARSLISEMRMAGIMPDTVSYSTLLTM 123

Query: 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
           Y + +   +AL ++  MRE K  ++ I  N ++++   + + +EA++LF  M+     +P
Sbjct: 124 YVENQKFLEALSVFAEMREIKCLLNLITCNVMIDVYGQLDMAKEADKLFWGMRKXG-IEP 182

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           +  SY  +L +YG       AI LF  M    +  NV+    ++   GK    +    + 
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANNLI 242

Query: 492 GVSIDRGVKPDDRLCGCLLSV 512
               +RG++PD      ++S+
Sbjct: 243 QEMHNRGIEPDAITYSTIISI 263



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 100/244 (40%), Gaps = 36/244 (14%)

Query: 290 PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSL 349
           PD   +S L   FG+ G +D     LQ+M+   V  +LV+Y+ L+E   K      A S+
Sbjct: 7   PDKYTYSTLITYFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDFSKAISI 66

Query: 350 FDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCAD 409
           F  +  SG+TPD                                    + YN+++N+   
Sbjct: 67  FSRLKRSGITPD-----------------------------------LVAYNSMINVFGK 91

Query: 410 IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVM 469
             L  EA  L  +M+++    PD  SY+ +L +Y        A+ +F EM E+   +N++
Sbjct: 92  AKLFREARSLISEMRMAG-IMPDTVSYSTLLTMYVENQKFLEALSVFAEMREIKCLLNLI 150

Query: 470 GCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCL 529
            C  +I   G+     +  ++F      G++P+      LL V    E   +   +   +
Sbjct: 151 TCNVMIDVYGQLDMAKEADKLFWGMRKXGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLM 210

Query: 530 QQAN 533
           Q+ N
Sbjct: 211 QRKN 214



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/242 (20%), Positives = 103/242 (42%), Gaps = 5/242 (2%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           P+  +    L +    + + ++   F  ++ +N+     + YN  M       + +    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNI-EQNVVTYNTMMMIYGKTLEHEKANN 240

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  EM +  IE D ITYSTII+   +    D A   F+++  +G+  D++ Y  ++  Y 
Sbjct: 241 LIQEMHNRGIEPDAITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILYQTMIVAYE 300

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           ++G V       +R +    +PD I       +   +G  +   +V ++    G   ++ 
Sbjct: 301 RAGLVAHA----KRLLHELKRPDNIPRDTAIHILAGAGRIEEATWVFRQAIDAGEVKDIT 356

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
           V+  ++    K  K      +F++M   G  PD   +  ++  YGK R  + A + +  M
Sbjct: 357 VFERMINLFSKYKKYSNVVEVFEKMRGLGYFPDSNVIALVLNAYGKLREFEKANDAYTEM 416

Query: 389 RE 390
           ++
Sbjct: 417 QD 418


>gi|224111844|ref|XP_002316000.1| predicted protein [Populus trichocarpa]
 gi|222865040|gb|EEF02171.1| predicted protein [Populus trichocarpa]
          Length = 745

 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 98/367 (26%), Positives = 169/367 (46%), Gaps = 40/367 (10%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           FF  +    + P +T  YN+ +  L      +   +L N+M    ++ D +TY  +    
Sbjct: 207 FFCMMLKYGILP-DTYSYNILIHGLIVAGSMEEALELTNDMEKQGLQPDMVTYKIVAKGF 265

Query: 233 KRCNLFDEAIEWFERMY-KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291
               L   A E  ++M    GL PD VTY+ ++  + + G +EE L L    ++SG++ +
Sbjct: 266 HLLGLMSGAREIIQKMLTDEGLKPDLVTYTVLICGHCQMGNIEEALRLRRDLLSSGFQLN 325

Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK--------- 342
            I +SVL     + G  D    +L EM++  +QP+LV Y+ L+  + K GK         
Sbjct: 326 VILYSVLLSSLCKRGQVDEALQLLYEMEANNLQPDLVTYSILIHGLCKQGKVQQAIQLYK 385

Query: 343 ------------------PGL--------ARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
                              GL        AR  FD ++ S L PD      +I  Y K  
Sbjct: 386 EMCFNRIFPNSFAHSGILKGLCEKGMLSDARMYFDSLIMSNLRPDVTLYNIMIDGYVKLG 445

Query: 377 WAKDALELWERMRENKWPMDFILYNTLL-NMCADIGLVEEAERLFEDMKLSDYCKPDNYS 435
             ++A+ L++R+R+       + +N+L+   C +  +V EA RL E +KL    +P   +
Sbjct: 446 DVEEAVRLYKRLRDKAITPSIVTFNSLIYGFCKNRKVV-EARRLLESIKLHG-LEPSAVT 503

Query: 436 YTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSI 495
           YT ++N Y   GN++   EL  EM+   +   V+  T +I+ L K R++++ V++     
Sbjct: 504 YTTLMNAYCEEGNINKLHELLLEMNLKDIEPTVVTYTVVIKGLCKQRKLEESVQLLEDMR 563

Query: 496 DRGVKPD 502
            +G+ PD
Sbjct: 564 AKGLAPD 570



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 85/370 (22%), Positives = 164/370 (44%), Gaps = 37/370 (10%)

Query: 177 IKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCN 236
           +++ NL P + + Y++ +  L    + Q   QL  EM  N I  ++  +S I+       
Sbjct: 352 MEANNLQP-DLVTYSILIHGLCKQGKVQQAIQLYKEMCFNRIFPNSFAHSGILKGLCEKG 410

Query: 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER-------------- 282
           +  +A  +F+ +  + L PD   Y+ ++D Y K G VEE + LY+R              
Sbjct: 411 MLSDARMYFDSLIMSNLRPDVTLYNIMIDGYVKLGDVEEAVRLYKRLRDKAITPSIVTFN 470

Query: 283 ----GVA-----------------SGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
               G                    G +P  + ++ L   + E G+ + +  +L EM   
Sbjct: 471 SLIYGFCKNRKVVEARRLLESIKLHGLEPSAVTYTTLMNAYCEEGNINKLHELLLEMNLK 530

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
            ++P +V Y  +++ + K  K   +  L ++M   GL PD+ T   +I+ + KA+  + A
Sbjct: 531 DIEPTVVTYTVVIKGLCKQRKLEESVQLLEDMRAKGLAPDQITYNTIIQCFCKAKDMRKA 590

Query: 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
            EL + M  +        YN L++     G VE+A+R+   ++  +       +YT M+ 
Sbjct: 591 FELLDDMLIHNLEPTPATYNVLIDGLCRYGDVEDADRVLVSLQDRN-INLTKVAYTTMIK 649

Query: 442 IYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
            +   G+   A+++F +M E G  +++   + +I  L K   I++    F + +  GV P
Sbjct: 650 AHCVKGDAQRAVKVFHQMVEKGFEVSIKDYSAVINRLCKRCLINEAKYYFCIMLSDGVSP 709

Query: 502 DDRLCGCLLS 511
           D  +   +L+
Sbjct: 710 DQEIFEMMLN 719



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 89/383 (23%), Positives = 169/383 (44%), Gaps = 13/383 (3%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           +L  +++S+  +L+ I YS +++   +    DEA++    M    L PD VTYS ++   
Sbjct: 312 RLRRDLLSSGFQLNVILYSVLLSSLCKRGQVDEALQLLYEMEANNLQPDLVTYSILIHGL 371

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            K GKV++ + LY+    +   P+  A S + K   E G     R     +    ++P++
Sbjct: 372 CKQGKVQQAIQLYKEMCFNRIFPNSFAHSGILKGLCEKGMLSDARMYFDSLIMSNLRPDV 431

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
            +YN +++   K G    A  L+  + +  +TP   T  +LI  + K R   +A  L E 
Sbjct: 432 TLYNIMIDGYVKLGDVEEAVRLYKRLRDKAITPSIVTFNSLIYGFCKNRKVVEARRLLES 491

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           ++ +      + Y TL+N   + G + +   L  +M L D  +P   +YT ++       
Sbjct: 492 IKLHGLEPSAVTYTTLMNAYCEEGNINKLHELLLEMNLKD-IEPTVVTYTVVIKGLCKQR 550

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCG 507
            ++ +++L E+M   G+A + +    +IQC  KA+ +     +    +   ++P      
Sbjct: 551 KLEESVQLLEDMRAKGLAPDQITYNTIIQCFCKAKDMRKAFELLDDMLIHNLEPTPATYN 610

Query: 508 CLLSVVSLCETSEDVGKVITCLQQANPKL--VAFLNLIEDNSTG----------FENIKE 555
            L+  +      ED  +V+  LQ  N  L  VA+  +I+ +              + +++
Sbjct: 611 VLIDGLCRYGDVEDADRVLVSLQDRNINLTKVAYTTMIKAHCVKGDAQRAVKVFHQMVEK 670

Query: 556 EFRNVIKDTEVDARRPFCNCLID 578
            F   IKD      R    CLI+
Sbjct: 671 GFEVSIKDYSAVINRLCKRCLIN 693



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 75/316 (23%), Positives = 143/316 (45%), Gaps = 39/316 (12%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           ++++TI++   +  L D A  +F  M K G++PD  +Y+ ++     +G +EE L L   
Sbjct: 186 VSFNTIMSRYCKLGLADVAKSFFCMMLKYGILPDTYSYNILIHGLIVAGSMEEALELTND 245

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEM------------------------ 318
               G +PD + + ++ K F   G   G R ++Q+M                        
Sbjct: 246 MEKQGLQPDMVTYKIVAKGFHLLGLMSGAREIIQKMLTDEGLKPDLVTYTVLICGHCQMG 305

Query: 319 ------------KSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
                        S G Q N+++Y+ LL ++ K G+   A  L  EM  + L PD  T +
Sbjct: 306 NIEEALRLRRDLLSSGFQLNVILYSVLLSSLCKRGQVDEALQLLYEMEANNLQPDLVTYS 365

Query: 367 ALIKIYGKARWAKDALELWERMRENK-WPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
            LI    K    + A++L++ M  N+ +P  F     L  +C   G++ +A   F+ + +
Sbjct: 366 ILIHGLCKQGKVQQAIQLYKEMCFNRIFPNSFAHSGILKGLCEK-GMLSDARMYFDSLIM 424

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
           S+  +PD   Y  M++ Y   G+V+ A+ L++ + +  +  +++    LI    K R++ 
Sbjct: 425 SN-LRPDVTLYNIMIDGYVKLGDVEEAVRLYKRLRDKAITPSIVTFNSLIYGFCKNRKVV 483

Query: 486 DLVRVFGVSIDRGVKP 501
           +  R+       G++P
Sbjct: 484 EARRLLESIKLHGLEP 499



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 110/482 (22%), Positives = 214/482 (44%), Gaps = 29/482 (6%)

Query: 165 KFWQKSYFFFNWIKSQNLFP-METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNI 223
           +    + F    +K QNL P ++T  YN  + +LR      ++  + N++  +       
Sbjct: 97  RMVHDALFVLVKMKEQNLRPSIQT--YNSLLYNLR---HTDIMWDVYNDIKDSGTPQSAR 151

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           T S I+      + F +A+ +  +       P  V+++ I+  Y K G  +   S +   
Sbjct: 152 TSSIIVDGLCGQSRFRDAVLFLRQNDGKEFAPSVVSFNTIMSRYCKLGLADVAKSFFCMM 211

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
           +  G  PD  ++++L      +G  +    +  +M+  G+QP++V Y  + +     G  
Sbjct: 212 LKYGILPDTYSYNILIHGLIVAGSMEEALELTNDMEKQGLQPDMVTYKIVAKGFHLLGLM 271

Query: 344 GLARSLFDEMV-ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
             AR +  +M+ + GL PD  T T LI  + +    ++AL L   +  + + ++ ILY+ 
Sbjct: 272 SGAREIIQKMLTDEGLKPDLVTYTVLICGHCQMGNIEEALRLRRDLLSSGFQLNVILYSV 331

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
           LL+     G V+EA +L  +M+ ++  +PD  +Y+ +++     G V  AI+L++EM   
Sbjct: 332 LLSSLCKRGQVDEALQLLYEME-ANNLQPDLVTYSILIHGLCKQGKVQQAIQLYKEMCFN 390

Query: 463 GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL-SVVSLCETSED 521
            +  N    + +++ L +   + D    F   I   ++PD  L   ++   V L +  E 
Sbjct: 391 RIFPNSFAHSGILKGLCEKGMLSDARMYFDSLIMSNLRPDVTLYNIMIDGYVKLGDVEEA 450

Query: 522 VGKVITCLQQA-NPKLVAFLNLIEDNSTGFENIKE--EFRNVIKDTEVDARRP----FCN 574
           V        +A  P +V F +LI     GF   ++  E R +++  ++    P    +  
Sbjct: 451 VRLYKRLRDKAITPSIVTFNSLI----YGFCKNRKVVEARRLLESIKLHGLEPSAVTYTT 506

Query: 575 CLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALEEWMW 634
            +   C   N+N + HELL    L  + P     T+  +++ ++ L     Q  LEE + 
Sbjct: 507 LMNAYCEEGNIN-KLHELLLEMNLKDIEP-----TVVTYTVVIKGL---CKQRKLEESVQ 557

Query: 635 TL 636
            L
Sbjct: 558 LL 559



 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 66/277 (23%), Positives = 124/277 (44%), Gaps = 5/277 (1%)

Query: 192 VTMKSLRFG----RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           VT  SL +G    R+     +L   +  + +E   +TY+T++         ++  E    
Sbjct: 467 VTFNSLIYGFCKNRKVVEARRLLESIKLHGLEPSAVTYTTLMNAYCEEGNINKLHELLLE 526

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M    + P  VTY+ ++    K  K+EE + L E   A G  PD I ++ + + F ++ D
Sbjct: 527 MNLKDIEPTVVTYTVVIKGLCKQRKLEESVQLLEDMRAKGLAPDQITYNTIIQCFCKAKD 586

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
                 +L +M    ++P    YN L++ + + G    A  +   + +  +   +   T 
Sbjct: 587 MRKAFELLDDMLIHNLEPTPATYNVLIDGLCRYGDVEDADRVLVSLQDRNINLTKVAYTT 646

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           +IK +     A+ A++++ +M E  + +    Y+ ++N      L+ EA+  F  M LSD
Sbjct: 647 MIKAHCVKGDAQRAVKVFHQMVEKGFEVSIKDYSAVINRLCKRCLINEAKYYFCIM-LSD 705

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
              PD   +  MLN +   G+V +  EL   M + G+
Sbjct: 706 GVSPDQEIFEMMLNAFHRAGHVHSVFELLAVMIKFGL 742



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 85/211 (40%), Gaps = 37/211 (17%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
            + Y V +K L   R+ +   QL  +M +  +  D ITY+TII C  +     +A E  +
Sbjct: 536 VVTYTVVIKGLCKQRKLEESVQLLEDMRAKGLAPDQITYNTIIQCFCKAKDMRKAFELLD 595

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEE----VLSLYERGV------------ASGWKP 290
            M    L P   TY+ ++D   + G VE+    ++SL +R +            A   K 
Sbjct: 596 DMLIHNLEPTPATYNVLIDGLCRYGDVEDADRVLVSLQDRNINLTKVAYTTMIKAHCVKG 655

Query: 291 DPI-AFSVLGKMFGESG------DYDGI-------------RYVLQEMKSLGVQPNLVVY 330
           D   A  V  +M  E G      DY  +             +Y    M S GV P+  ++
Sbjct: 656 DAQRAVKVFHQMV-EKGFEVSIKDYSAVINRLCKRCLINEAKYYFCIMLSDGVSPDQEIF 714

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPD 361
             +L A  +AG       L   M++ GL  D
Sbjct: 715 EMMLNAFHRAGHVHSVFELLAVMIKFGLLHD 745


>gi|326524964|dbj|BAK04418.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 565

 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 96/369 (26%), Positives = 170/369 (46%), Gaps = 38/369 (10%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           FF W + Q  F      ++  +++L   +QF+L+  L   M    + L   T+  I+   
Sbjct: 165 FFRWAERQQGFVYTADSFHNLIEALGKIKQFRLVWSLVEAMRCRGL-LSKDTFRLIVRRY 223

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG-WKPD 291
            R     EA+E FE+M   GL  D   Y+ ++DV +KS +V++  ++++    +G + PD
Sbjct: 224 ARARKVKEAVETFEKMAGFGLKADLSDYNWLIDVLSKSKQVKKAHAIFKEMKRNGRFVPD 283

Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
              ++VL + +G   D   ++ V QEM   G+QP++V Y  L+ +  K+GK   A  +F 
Sbjct: 284 LKTYTVLMEGWGHEKDLLMLKSVYQEMLDAGLQPDVVAYGMLISSFCKSGKCDEAIKVFR 343

Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMD--------------- 396
           EM  +G  P       LI   G      +AL+ +E  + + +PM+               
Sbjct: 344 EMETNGCMPSPHVYCMLINGLGSEERLDEALKYFELSKASGFPMEVPTCNAVVGAYCRSS 403

Query: 397 -----FIL---------------YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY 436
                F +               Y+ +L+       +EEA  +F+ M   D C+P   +Y
Sbjct: 404 KFQHAFKMVDEMRKSGIGPNSRTYDIILHHLIKSQKIEEAYNVFQGMS-KDGCEPQLNTY 462

Query: 437 TAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496
           T M+ ++ S   VD A++++ +M E GV   +   + LI  L    R+++    F   +D
Sbjct: 463 TMMVGMFCSNERVDVALKVWNQMKEKGVLPCMHMFSALINGLCFENRLEEACAYFQEMLD 522

Query: 497 RGVKPDDRL 505
           RG++P  +L
Sbjct: 523 RGIRPPGQL 531



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 70/304 (23%), Positives = 138/304 (45%), Gaps = 3/304 (0%)

Query: 160 ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIE 219
           +L+  K  +K++  F  +K    F  +   Y V M+     +   +++ +  EM+   ++
Sbjct: 257 VLSKSKQVKKAHAIFKEMKRNGRFVPDLKTYTVLMEGWGHEKDLLMLKSVYQEMLDAGLQ 316

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
            D + Y  +I+   +    DEAI+ F  M   G MP    Y  +++      +++E L  
Sbjct: 317 PDVVAYGMLISSFCKSGKCDEAIKVFREMETNGCMPSPHVYCMLINGLGSEERLDEALKY 376

Query: 280 YERGVASGWKPD-PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMG 338
           +E   ASG+  + P   +V+G  +  S  +     ++ EM+  G+ PN   Y+ +L  + 
Sbjct: 377 FELSKASGFPMEVPTCNAVVGA-YCRSSKFQHAFKMVDEMRKSGIGPNSRTYDIILHHLI 435

Query: 339 KAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFI 398
           K+ K   A ++F  M + G  P   T T ++ ++        AL++W +M+E        
Sbjct: 436 KSQKIEEAYNVFQGMSKDGCEPQLNTYTMMVGMFCSNERVDVALKVWNQMKEKGVLPCMH 495

Query: 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458
           +++ L+N       +EEA   F++M L    +P    ++ +      GG +  A E+  +
Sbjct: 496 MFSALINGLCFENRLEEACAYFQEM-LDRGIRPPGQLFSNLKEALIEGGRISLAQEMALK 554

Query: 459 MSEL 462
           + EL
Sbjct: 555 LDEL 558



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/234 (22%), Positives = 101/234 (43%), Gaps = 5/234 (2%)

Query: 130 KLNDCDNTEEAFLRAITEIPHQPTRENALLILNSLKFWQK---SYFFFNWIKSQNLFPME 186
           K   CD   + F R +      P+     +++N L   ++   +  +F   K+   FPME
Sbjct: 331 KSGKCDEAIKVF-REMETNGCMPSPHVYCMLINGLGSEERLDEALKYFELSKASG-FPME 388

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
               N  + +     +FQ   ++ +EM  + I  ++ TY  I+    +    +EA   F+
Sbjct: 389 VPTCNAVVGAYCRSSKFQHAFKMVDEMRKSGIGPNSRTYDIILHHLIKSQKIEEAYNVFQ 448

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
            M K G  P   TY+ ++ ++  + +V+  L ++ +    G  P    FS L        
Sbjct: 449 GMSKDGCEPQLNTYTMMVGMFCSNERVDVALKVWNQMKEKGVLPCMHMFSALINGLCFEN 508

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTP 360
             +      QEM   G++P   +++ L EA+ + G+  LA+ +  ++ E   TP
Sbjct: 509 RLEEACAYFQEMLDRGIRPPGQLFSNLKEALIEGGRISLAQEMALKLDELRKTP 562


>gi|326493766|dbj|BAJ85345.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 671

 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 86/316 (27%), Positives = 152/316 (48%), Gaps = 10/316 (3%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
           TI YN  +K L   ++++ + QL  EMV  +   +  T+S + +C  +  L D A+E  E
Sbjct: 314 TICYNAALKGLCIAQRWEDVGQLIVEMVRKDCLPNEATFSMLTSCLCQNGLVDCAMEVLE 373

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
           +M+K G  PD V Y+ ++  +++ G+V++ L L      S   PD I+F+   K    + 
Sbjct: 374 QMHKYGCRPDAVIYNTLIYSFSEQGRVDDALKLLNSMPCS---PDVISFNAALKGLCRAE 430

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
            +D    ++ +M         + +N L++++ + G+   A  +F++M + G TPD  T +
Sbjct: 431 RWDDAEELIVQMLREDCPLIEMTFNILIDSLCQNGRVNNAIEVFEQMPKYGCTPDIVTYS 490

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
           +LI    +    + A+EL++ M       D   YN +L         E+A  L  +M   
Sbjct: 491 SLINGLSEQGLVESAIELFQSM---PCKPDIFGYNAVLKGLCRAARWEDAGELISNMARK 547

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
           D C P+  ++  ++N     G VD AIE+FE+M + G   ++     LI    +  R+DD
Sbjct: 548 D-CPPNEITFNILINSLCQKGLVDRAIEVFEQMPKYGSTPDIFTYNALINGFSEQGRLDD 606

Query: 487 LVRVFGVSIDRGVKPD 502
             R+         KPD
Sbjct: 607 ARRLLSTM---SCKPD 619



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 159/342 (46%), Gaps = 40/342 (11%)

Query: 177 IKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCN 236
           I S  + P +T  YN  +  L   RQ++  E L  EMV N    + +T++T I    +  
Sbjct: 203 IASMPVAP-DTYTYNTVLMGLCGARQWEDAEALMAEMVRNHCPPNEVTFATQIRAFCQNG 261

Query: 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYE--------------- 281
           L D A++  +RM + G  PD V YS +++ +++ G+V++ + L                 
Sbjct: 262 LLDRAVQLLDRMPQYGCTPDVVIYSTLVNGFSEQGRVDDAIELLNGMLCKPNTICYNAAL 321

Query: 282 RG--VASGWK---------------PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQ 324
           +G  +A  W+               P+   FS+L     ++G  D    VL++M   G +
Sbjct: 322 KGLCIAQRWEDVGQLIVEMVRKDCLPNEATFSMLTSCLCQNGLVDCAMEVLEQMHKYGCR 381

Query: 325 PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384
           P+ V+YNTL+ +  + G+   A  L + M     +PD  +  A +K   +A    DA EL
Sbjct: 382 PDAVIYNTLIYSFSEQGRVDDALKLLNSM---PCSPDVISFNAALKGLCRAERWDDAEEL 438

Query: 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYG 444
             +M     P+  + +N L++     G V  A  +FE M     C PD  +Y++++N   
Sbjct: 439 IVQMLREDCPLIEMTFNILIDSLCQNGRVNNAIEVFEQMPKYG-CTPDIVTYSSLINGLS 497

Query: 445 SGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
             G V++AIELF+ M       ++ G   +++ L +A R +D
Sbjct: 498 EQGLVESAIELFQSMP---CKPDIFGYNAVLKGLCRAARWED 536



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 136/306 (44%), Gaps = 12/306 (3%)

Query: 199 FGRQFQLIEQLANEMVSNEIELDNITYSTIIT--CAKRCNLFDEAIEWFERMYKTGLMPD 256
           + R  +L + LA  + S  +  D  TY+T++   C  R   +++A      M +    P+
Sbjct: 190 YCRSGRLADALA-LIASMPVAPDTYTYNTVLMGLCGAR--QWEDAEALMAEMVRNHCPPN 246

Query: 257 EVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQ 316
           EVT++  +  + ++G ++  + L +R    G  PD + +S L   F E G  D     ++
Sbjct: 247 EVTFATQIRAFCQNGLLDRAVQLLDRMPQYGCTPDVVIYSTLVNGFSEQGRVDD---AIE 303

Query: 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
            +  +  +PN + YN  L+ +  A +      L  EMV     P+E T + L     +  
Sbjct: 304 LLNGMLCKPNTICYNAALKGLCIAQRWEDVGQLIVEMVRKDCLPNEATFSMLTSCLCQNG 363

Query: 377 WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY 436
               A+E+ E+M +     D ++YNTL+   ++ G V++A +L   M     C PD  S+
Sbjct: 364 LVDCAMEVLEQMHKYGCRPDAVIYNTLIYSFSEQGRVDDALKLLNSMP----CSPDVISF 419

Query: 437 TAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496
            A L         D+A EL  +M      +  M    LI  L +  R+++ + VF     
Sbjct: 420 NAALKGLCRAERWDDAEELIVQMLREDCPLIEMTFNILIDSLCQNGRVNNAIEVFEQMPK 479

Query: 497 RGVKPD 502
            G  PD
Sbjct: 480 YGCTPD 485



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 99/245 (40%), Gaps = 42/245 (17%)

Query: 258 VTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQE 317
           VTY+ +++ Y +SG++ + L+L                                      
Sbjct: 181 VTYTTLINGYCRSGRLADALAL-------------------------------------- 202

Query: 318 MKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARW 377
           + S+ V P+   YNT+L  +  A +   A +L  EMV +   P+E T    I+ + +   
Sbjct: 203 IASMPVAPDTYTYNTVLMGLCGARQWEDAEALMAEMVRNHCPPNEVTFATQIRAFCQNGL 262

Query: 378 AKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYT 437
              A++L +RM +     D ++Y+TL+N  ++ G V++A  L   M     CKP+   Y 
Sbjct: 263 LDRAVQLLDRMPQYGCTPDVVIYSTLVNGFSEQGRVDDAIELLNGM----LCKPNTICYN 318

Query: 438 AMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDR 497
           A L         ++  +L  EM       N    + L  CL +   +D  + V       
Sbjct: 319 AALKGLCIAQRWEDVGQLIVEMVRKDCLPNEATFSMLTSCLCQNGLVDCAMEVLEQMHKY 378

Query: 498 GVKPD 502
           G +PD
Sbjct: 379 GCRPD 383



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 79/175 (45%), Gaps = 4/175 (2%)

Query: 192 VTMKSLRFGRQFQ-LIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYK 250
           VT  SL  G   Q L+E       S   + D   Y+ ++    R   +++A E    M +
Sbjct: 487 VTYSSLINGLSEQGLVESAIELFQSMPCKPDIFGYNAVLKGLCRAARWEDAGELISNMAR 546

Query: 251 TGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDG 310
               P+E+T++ +++   + G V+  + ++E+    G  PD   ++ L   F E G  D 
Sbjct: 547 KDCPPNEITFNILINSLCQKGLVDRAIEVFEQMPKYGSTPDIFTYNALINGFSEQGRLDD 606

Query: 311 IRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
            R +L  M     +P+ V YN+ L+ + +A +   A  +  EM+     P+E T 
Sbjct: 607 ARRLLSTMS---CKPDAVSYNSALKGLCRAERWKEAEEVVAEMLRMKCPPNEVTF 658


>gi|357125724|ref|XP_003564540.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
           chloroplastic-like [Brachypodium distachyon]
          Length = 652

 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 150/321 (46%), Gaps = 8/321 (2%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN+ +++     Q +L   L  EM    +  D  +YST++    R    D A+ +   M 
Sbjct: 121 YNLLLRAASRAGQLRLASGLLLEMRHRGVAADAFSYSTLLAALTRAGHLDHALTFLPLME 180

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY- 308
              + PD V +S ++ +  + G     L+L+ R  A+G +PD  A++     + +S    
Sbjct: 181 ADAVSPDLVLFSNLIHLALRGGDAPRALALFSRLRAAGIRPDLKAYNAAIAAYCKSDLLR 240

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM-VESGLTPDEKTLTA 367
           D  R +L ++ + GV P+   Y+ +L A+ + G+   A SLF  M   + + PD      
Sbjct: 241 DAKRLLLHDIPADGVAPDAESYSPILAALARRGRHLAAVSLFSHMRAVARVKPDLSVFNI 300

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM--KL 425
           ++  YG+   A++A  L+  MR    P   + YNT+L +  D GL  EA  LF  M    
Sbjct: 301 VLNAYGQLDLAREADRLFWSMRRTGVPPSVVTYNTMLRVYGDAGLFGEAVHLFGLMCSSA 360

Query: 426 SD----YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
           SD      KP+  +Y  +++I+G     + A  L  +M   G+  N +  + ++    KA
Sbjct: 361 SDGNGSSVKPNVVTYNTIISIHGKSLEDEKAGSLVRDMQANGIQPNAVTYSTILSIWVKA 420

Query: 482 RRIDDLVRVFGVSIDRGVKPD 502
            ++D   ++F   ++ G + D
Sbjct: 421 GKLDRAAKLFEKLLESGTEID 441



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 85/341 (24%), Positives = 161/341 (47%), Gaps = 11/341 (3%)

Query: 198 RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDE 257
           R GR    +   ++      ++ D   ++ ++    + +L  EA   F  M +TG+ P  
Sbjct: 271 RRGRHLAAVSLFSHMRAVARVKPDLSVFNIVLNAYGQLDLAREADRLFWSMRRTGVPPSV 330

Query: 258 VTYSAILDVYAKSGKVEEVLSLY-------ERGVASGWKPDPIAFSVLGKMFGESGDYDG 310
           VTY+ +L VY  +G   E + L+         G  S  KP+ + ++ +  + G+S + + 
Sbjct: 331 VTYNTMLRVYGDAGLFGEAVHLFGLMCSSASDGNGSSVKPNVVTYNTIISIHGKSLEDEK 390

Query: 311 IRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK 370
              ++++M++ G+QPN V Y+T+L    KAGK   A  LF++++ESG   D      ++ 
Sbjct: 391 AGSLVRDMQANGIQPNAVTYSTILSIWVKAGKLDRAAKLFEKLLESGTEIDPVLYQTMVV 450

Query: 371 IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCK 430
            Y +A     A  L   +RE K P + I   T +++ A+ G VEEA  LF     +   +
Sbjct: 451 AYERAGLVSQAKRL---LRELKDPAEGIPTETAISILANAGRVEEAAWLFRRAVNTGEVR 507

Query: 431 PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRV 490
            D   + AM++++       + +E+F+EM +LG   +       +   GK +  D    +
Sbjct: 508 -DPSVHRAMMDLFAKNRRHRSVVEVFDEMRKLGHLPDSETIATAMNAYGKLKEFDKAAML 566

Query: 491 FGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ 531
           +  S + G    DR+   +LS++   +  E +  +++ L  
Sbjct: 567 YRASREEGCVFSDRVHFQMLSLLGAQKDFEALESLVSELSH 607



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/293 (21%), Positives = 132/293 (45%), Gaps = 11/293 (3%)

Query: 176 WIKSQNLFPMETIFYNVTMK----SLRFGRQ---FQLIEQLANEMVSNEIELDNITYSTI 228
           W   +   P   + YN  ++    +  FG     F L+   A++   + ++ + +TY+TI
Sbjct: 319 WSMRRTGVPPSVVTYNTMLRVYGDAGLFGEAVHLFGLMCSSASDGNGSSVKPNVVTYNTI 378

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
           I+   +    ++A      M   G+ P+ VTYS IL ++ K+GK++    L+E+ + SG 
Sbjct: 379 ISIHGKSLEDEKAGSLVRDMQANGIQPNAVTYSTILSIWVKAGKLDRAAKLFEKLLESGT 438

Query: 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348
           + DP+ +  +   +  +G     + +L+E+K        +   T +  +  AG+   A  
Sbjct: 439 EIDPVLYQTMVVAYERAGLVSQAKRLLRELKD---PAEGIPTETAISILANAGRVEEAAW 495

Query: 349 LFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCA 408
           LF   V +G   D     A++ ++ K R  +  +E+++ MR+     D     T +N   
Sbjct: 496 LFRRAVNTGEVRDPSVHRAMMDLFAKNRRHRSVVEVFDEMRKLGHLPDSETIATAMNAYG 555

Query: 409 DIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461
            +   ++A  L+   +  + C   +  +  ML++ G+  + +    L  E+S 
Sbjct: 556 KLKEFDKAAMLYRASR-EEGCVFSDRVHFQMLSLLGAQKDFEALESLVSELSH 607



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 117/308 (37%), Gaps = 60/308 (19%)

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK---------- 342
           + +++L +    +G       +L EM+  GV  +   Y+TLL A+ +AG           
Sbjct: 119 VPYNLLLRAASRAGQLRLASGLLLEMRHRGVAADAFSYSTLLAALTRAGHLDHALTFLPL 178

Query: 343 -------PGL------------------ARSLFDEMVESGLTPDEKTLTALIKIYGKARW 377
                  P L                  A +LF  +  +G+ PD K   A I  Y K+  
Sbjct: 179 MEADAVSPDLVLFSNLIHLALRGGDAPRALALFSRLRAAGIRPDLKAYNAAIAAYCKSDL 238

Query: 378 AKDALELWERMRENKWPMDFIL-----YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPD 432
            +DA    +R+  +  P D +      Y+ +L   A  G    A  LF  M+     KPD
Sbjct: 239 LRDA----KRLLLHDIPADGVAPDAESYSPILAALARRGRHLAAVSLFSHMRAVARVKPD 294

Query: 433 NYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFG 492
              +  +LN YG       A  LF  M   GV  +V+    +++  G A    + V +FG
Sbjct: 295 LSVFNIVLNAYGQLDLAREADRLFWSMRRTGVPPSVVTYNTMLRVYGDAGLFGEAVHLFG 354

Query: 493 V---SIDRG----VKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIED 545
           +   S   G    VKP+      ++S+       E  G ++  +Q          N I+ 
Sbjct: 355 LMCSSASDGNGSSVKPNVVTYNTIISIHGKSLEDEKAGSLVRDMQA---------NGIQP 405

Query: 546 NSTGFENI 553
           N+  +  I
Sbjct: 406 NAVTYSTI 413


>gi|356554658|ref|XP_003545661.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Glycine max]
          Length = 675

 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 90/316 (28%), Positives = 150/316 (47%), Gaps = 3/316 (0%)

Query: 188 IFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
           + YN  M  L ++GR      +L + MV+  +  D ++Y+T+I    R     EA   F 
Sbjct: 296 VTYNTIMYGLCKWGRVSD-ARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFA 354

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
            +   GL+P  VTY+ ++D   + G ++  + L +  +  G  PD   F++L + F + G
Sbjct: 355 ELRFRGLVPSVVTYNTLIDGLCRMGDLDVAMRLKDEMIKHGPDPDVFTFTILVRGFCKLG 414

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
           +    + +  EM + G+QP+   Y T +    K G P  A  + +EM+  G  PD  T  
Sbjct: 415 NLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYN 474

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
             I    K    K+A EL ++M  N    D + Y ++++     G + +A  +F +M LS
Sbjct: 475 VFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARAVFLEM-LS 533

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
               P   +YT +++ Y   G +  AI  F EM E GV  NV+    LI  L K R++D 
Sbjct: 534 KGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQ 593

Query: 487 LVRVFGVSIDRGVKPD 502
             + F     +G+ P+
Sbjct: 594 AYKFFTEMQAKGISPN 609



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 137/303 (45%), Gaps = 5/303 (1%)

Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS 261
           Q     +L  EM+S       +TY+TI+    +     +A +  + M    LMPD V+Y+
Sbjct: 275 QLDEASRLGEEMLSRGAVPTLVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYN 334

Query: 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
            ++  Y + G + E   L+      G  P  + ++ L       GD D    +  EM   
Sbjct: 335 TLIYGYTRLGNIGEAFLLFAELRFRGLVPSVVTYNTLIDGLCRMGDLDVAMRLKDEMIKH 394

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWA--K 379
           G  P++  +  L+    K G   +A+ LFDEM+  GL PD      + +I G+ +     
Sbjct: 395 GPDPDVFTFTILVRGFCKLGNLPMAKELFDEMLNRGLQPDR--FAYITRIVGELKLGDPS 452

Query: 380 DALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAM 439
            A  + E M    +P D I YN  ++    +G ++EA  L + M L +   PD+ +YT++
Sbjct: 453 KAFGMQEEMLARGFPPDLITYNVFIDGLHKLGNLKEASELVKKM-LYNGLVPDHVTYTSI 511

Query: 440 LNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGV 499
           ++ +   G++  A  +F EM   G+  +V+  T LI       R+   +  F    ++GV
Sbjct: 512 IHAHLMAGHLRKARAVFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGV 571

Query: 500 KPD 502
            P+
Sbjct: 572 HPN 574



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 88/326 (26%), Positives = 159/326 (48%), Gaps = 11/326 (3%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           ++ N MV   I    +TY+T++    +     EA++   +M K G +P++VTY+ +++  
Sbjct: 176 EVYNVMVECGIRPTVVTYNTMLDSFCKQGKVQEALQLLLQMQKMGCLPNDVTYNVLVNGL 235

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
           + SG++E+   L +  +  G +     +  L + + E G  D    + +EM S G  P L
Sbjct: 236 SHSGELEQAKELIQEMLRLGLEVSAYTYDPLIRGYCEKGQLDEASRLGEEMLSRGAVPTL 295

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
           V YNT++  + K G+   AR L D MV   L PD  +   LI  Y +     +A  L+  
Sbjct: 296 VTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAE 355

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           +R        + YNTL++    +G ++ A RL ++M +     PD +++T ++  +   G
Sbjct: 356 LRFRGLVPSVVTYNTLIDGLCRMGDLDVAMRLKDEM-IKHGPDPDVFTFTILVRGFCKLG 414

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVS---IDRGVKPD-- 502
           N+  A ELF+EM   G+  +      + + +G+  ++ D  + FG+    + RG  PD  
Sbjct: 415 NLPMAKELFDEMLNRGLQPDRFA--YITRIVGEL-KLGDPSKAFGMQEEMLARGFPPDLI 471

Query: 503 --DRLCGCLLSVVSLCETSEDVGKVI 526
             +     L  + +L E SE V K++
Sbjct: 472 TYNVFIDGLHKLGNLKEASELVKKML 497



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 87/325 (26%), Positives = 151/325 (46%), Gaps = 14/325 (4%)

Query: 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
            D A E +  M + G+ P  VTY+ +LD + K GKV+E L L  +    G  P+ + ++V
Sbjct: 171 IDVAREVYNVMVECGIRPTVVTYNTMLDSFCKQGKVQEALQLLLQMQKMGCLPNDVTYNV 230

Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
           L      SG+ +  + ++QEM  LG++ +   Y+ L+    + G+   A  L +EM+  G
Sbjct: 231 LVNGLSHSGELEQAKELIQEMLRLGLEVSAYTYDPLIRGYCEKGQLDEASRLGEEMLSRG 290

Query: 358 LTPDEKTLTALIKIYGKARWAK--DALELWERMRENKWPMDFILYNTLLNMCADIGLVEE 415
             P   T   +  +YG  +W +  DA +L + M       D + YNTL+     +G + E
Sbjct: 291 AVPTLVTYNTI--MYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGE 348

Query: 416 AERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLI 475
           A  LF +++      P   +Y  +++     G++D A+ L +EM + G   +V   T L+
Sbjct: 349 AFLLFAELRFRGLV-PSVVTYNTLIDGLCRMGDLDVAMRLKDEMIKHGPDPDVFTFTILV 407

Query: 476 QCLGKARRIDDLVRVFGVSIDRGVKPD-----DRLCGCLLSVVSLCETSEDVGKVITCLQ 530
           +   K   +     +F   ++RG++PD      R+ G L     L + S+  G     L 
Sbjct: 408 RGFCKLGNLPMAKELFDEMLNRGLQPDRFAYITRIVGEL----KLGDPSKAFGMQEEMLA 463

Query: 531 QANPKLVAFLNLIEDNSTGFENIKE 555
           +  P  +   N+  D      N+KE
Sbjct: 464 RGFPPDLITYNVFIDGLHKLGNLKE 488



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 114/236 (48%), Gaps = 1/236 (0%)

Query: 205 LIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAIL 264
           + ++L +EM++  ++ D   Y T I    +     +A    E M   G  PD +TY+  +
Sbjct: 418 MAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYNVFI 477

Query: 265 DVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQ 324
           D   K G ++E   L ++ + +G  PD + ++ +      +G     R V  EM S G+ 
Sbjct: 478 DGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARAVFLEMLSKGIF 537

Query: 325 PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384
           P++V Y  L+ +    G+  LA   F EM E G+ P+  T  ALI    K R    A + 
Sbjct: 538 PSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQAYKF 597

Query: 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
           +  M+      +   Y  L+N   ++G  +EA RL++DM L    +PD+ +++A+L
Sbjct: 598 FTEMQAKGISPNKYTYTILINENCNLGHWQEALRLYKDM-LDREIQPDSCTHSALL 652



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 127/263 (48%), Gaps = 7/263 (2%)

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGK--- 300
           W ER  +TG    E+TY+ ILD+ A++G +     + E+ V+   +   +   +L     
Sbjct: 70  WAER--QTGFKRSELTYAVILDILARNGLMRSAYCVMEKVVSVKMENGVVDVLILDLLLW 127

Query: 301 MFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM-GKAGKPGLARSLFDEMVESGLT 359
           ++ +    +    V  +M S G+ P+L   N +L  +  +     +AR +++ MVE G+ 
Sbjct: 128 IYAKKSMLEKCLLVFYKMVSKGMLPDLKNCNRVLRLLRDRDSSIDVAREVYNVMVECGIR 187

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
           P   T   ++  + K    ++AL+L  +M++     + + YN L+N  +  G +E+A+ L
Sbjct: 188 PTVVTYNTMLDSFCKQGKVQEALQLLLQMQKMGCLPNDVTYNVLVNGLSHSGELEQAKEL 247

Query: 420 FEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479
            ++M L    +   Y+Y  ++  Y   G +D A  L EEM   G    ++    ++  L 
Sbjct: 248 IQEM-LRLGLEVSAYTYDPLIRGYCEKGQLDEASRLGEEMLSRGAVPTLVTYNTIMYGLC 306

Query: 480 KARRIDDLVRVFGVSIDRGVKPD 502
           K  R+ D  ++  V +++ + PD
Sbjct: 307 KWGRVSDARKLLDVMVNKNLMPD 329



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 87/192 (45%), Gaps = 8/192 (4%)

Query: 183 FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
           FP + I YNV +  L      +   +L  +M+ N +  D++TY++II          +A 
Sbjct: 466 FPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKAR 525

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVE----EVLSLYERGVASGWKPDPIAFSVL 298
             F  M   G+ P  VTY+ ++  YA  G+++        ++E+GV     P+ I ++ L
Sbjct: 526 AVFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGV----HPNVITYNAL 581

Query: 299 GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
                +    D       EM++ G+ PN   Y  L+      G    A  L+ +M++  +
Sbjct: 582 INGLCKVRKMDQAYKFFTEMQAKGISPNKYTYTILINENCNLGHWQEALRLYKDMLDREI 641

Query: 359 TPDEKTLTALIK 370
            PD  T +AL+K
Sbjct: 642 QPDSCTHSALLK 653


>gi|6633861|gb|AAF19720.1|AC008047_27 F2K11.2 [Arabidopsis thaliana]
          Length = 332

 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 84/308 (27%), Positives = 152/308 (49%), Gaps = 19/308 (6%)

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP----------DPIAFSV 297
           M +TG  P+ VT++ +++   + G+V E L+L +R V  G +P          D +  + 
Sbjct: 1   MVETGCRPNVVTFNTLMNSLCREGRVLEALALVDRMVEEGHQPNAMGQSHIKADVVISTA 60

Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
           +     + G++   + +  EM   G+ PN++ YN ++++   +G+   A  L   M+E  
Sbjct: 61  IVDRLCKDGNHINAQNLFTEMHEKGIFPNVLTYNCMIDSFCHSGRWSDADQLLRHMIEKQ 120

Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERM-RENKWPMDFILYNTLLNMCADIGLVEEA 416
           + PD  T +ALI  + K R   +A E+++ M R + +P   I YN++++       V++A
Sbjct: 121 INPDIVTFSALINAFVKERKVSEAEEIYKEMLRWSIFPTT-ITYNSMIDGFCKQDRVDDA 179

Query: 417 ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
           +R+ + M  S  C PD  +++ ++N Y     VDN +E+F EM   G+  N +  T LI 
Sbjct: 180 KRMLDSMA-SKGCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIH 238

Query: 477 CLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSE--DVGKVITCLQQAN- 533
              +   +D    +    I  GV PD     C+L+   LC   E      ++  LQ++  
Sbjct: 239 GFCQVGDLDAAQDLLNEMISCGVAPDYITFHCMLA--GLCSKKELRKAFAILEDLQKSEV 296

Query: 534 -PKLVAFL 540
            P+L+ FL
Sbjct: 297 CPRLIFFL 304



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/285 (22%), Positives = 127/285 (44%), Gaps = 11/285 (3%)

Query: 187 TIFYNVTMKSL-RFGRQFQ---LIEQLA------NEMVSNEIELDNITYSTIITCAKRCN 236
            + +N  M SL R GR  +   L++++       N M  + I+ D +  + I+    +  
Sbjct: 10  VVTFNTLMNSLCREGRVLEALALVDRMVEEGHQPNAMGQSHIKADVVISTAIVDRLCKDG 69

Query: 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS 296
               A   F  M++ G+ P+ +TY+ ++D +  SG+  +   L    +     PD + FS
Sbjct: 70  NHINAQNLFTEMHEKGIFPNVLTYNCMIDSFCHSGRWSDADQLLRHMIEKQINPDIVTFS 129

Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356
            L   F +         + +EM    + P  + YN++++   K  +   A+ + D M   
Sbjct: 130 ALINAFVKERKVSEAEEIYKEMLRWSIFPTTITYNSMIDGFCKQDRVDDAKRMLDSMASK 189

Query: 357 GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEA 416
           G +PD  T + LI  Y KA+   + +E++  M       + + Y TL++    +G ++ A
Sbjct: 190 GCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAA 249

Query: 417 ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461
           + L  +M +S    PD  ++  ML    S   +  A  + E++ +
Sbjct: 250 QDLLNEM-ISCGVAPDYITFHCMLAGLCSKKELRKAFAILEDLQK 293



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 62/256 (24%), Positives = 118/256 (46%), Gaps = 11/256 (4%)

Query: 175 NWIKSQNLFPM---ETIF-----YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           N I +QNLF     + IF     YN  + S     ++   +QL   M+  +I  D +T+S
Sbjct: 70  NHINAQNLFTEMHEKGIFPNVLTYNCMIDSFCHSGRWSDADQLLRHMIEKQINPDIVTFS 129

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
            +I    +     EA E ++ M +  + P  +TY++++D + K  +V++   + +   + 
Sbjct: 130 ALINAFVKERKVSEAEEIYKEMLRWSIFPTTITYNSMIDGFCKQDRVDDAKRMLDSMASK 189

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G  PD + FS L   + ++   D    +  EM   G+  N V Y TL+    + G    A
Sbjct: 190 GCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAA 249

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
           + L +EM+  G+ PD  T   ++      +  + A  + E +++++     I +  L ++
Sbjct: 250 QDLLNEMISCGVAPDYITFHCMLAGLCSKKELRKAFAILEDLQKSEVCPRLIFF--LFSL 307

Query: 407 CADI-GLVEEAERLFE 421
           C+ I G  E   R+ +
Sbjct: 308 CSFILGFGEVCYRIVQ 323


>gi|451798815|gb|AGF69111.1| PPR [Raphanus sativus]
          Length = 479

 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 88/298 (29%), Positives = 139/298 (46%), Gaps = 12/298 (4%)

Query: 216 NEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEE 275
           + I+ D + YS II    +     +A   F  M   G+ PD VTYS +++ +  SGK  E
Sbjct: 146 SHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSE 205

Query: 276 VLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLE 335
              L +  +     PD + FS L     + GD +  + +LQEM S GV PN+V  NTLL+
Sbjct: 206 AQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLD 265

Query: 336 AMGKAGKPGLARSLFDEMVES-----------GLTPDEKTLTALIKIYGKARWAKDALEL 384
            +  +GK   A  +F  M +S           G+ PD +T   LI          +A EL
Sbjct: 266 GLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEEL 325

Query: 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYG 444
           +E M       D + Y++++N       ++EA ++F+ M    +  P+  ++  ++  Y 
Sbjct: 326 YEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSF-SPNIVTFNTLITGYC 384

Query: 445 SGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
             G VD+ +ELF EM   G+  N +    LI+   K   I+  + +F   I  GV PD
Sbjct: 385 KAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPD 442



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 146/324 (45%), Gaps = 48/324 (14%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG----------K 272
           +T++T++    R     EA+   +RM + GL P+++TY  I+D   K G          K
Sbjct: 82  VTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRK 141

Query: 273 VEEV------LSLYERGVASGWK--------------------PDPIAFSVLGKMFGESG 306
           +EE+      + +Y   +   WK                    PD + +S +   F  SG
Sbjct: 142 MEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSG 201

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
            +   + +LQEM    + P++V ++ L+ A+ K G    A+ L  EM+ SG+ P+  T  
Sbjct: 202 KWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCN 261

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFI-----------LYNTLLNMCADIGLVEE 415
            L+     +   KDALE+++ M+++   +D              YN L++   + G   E
Sbjct: 262 TLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLE 321

Query: 416 AERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLI 475
           AE L+E+M       PD  +Y++M+N       +D A ++F+ M     + N++    LI
Sbjct: 322 AEELYEEMPHRGIV-PDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLI 380

Query: 476 QCLGKARRIDDLVRVFGVSIDRGV 499
               KA  +DD + +F     RG+
Sbjct: 381 TGYCKAGMVDDGLELFCEMGRRGI 404



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/307 (26%), Positives = 143/307 (46%), Gaps = 17/307 (5%)

Query: 217 EIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV 276
           +I  D  +++ +I C   C+    A+  F ++ K G  P  VT++ +L       +V E 
Sbjct: 10  QIPCDIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEA 69

Query: 277 LSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA 336
           L L+ +      KP+ + F+ L       G       +L  M   G+QPN + Y T+++ 
Sbjct: 70  LDLFHQMC----KPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDG 125

Query: 337 MGKAGKPGLARSLFDEMVE-SGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPM 395
           M K G    A +L  +M E S + PD    +A+I    K     DA  L+  M++     
Sbjct: 126 MCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFP 185

Query: 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIEL 455
           D + Y+ ++N     G   EA+RL ++M L     PD  +++ ++N     G++++A +L
Sbjct: 186 DIVTYSCMINGFCSSGKWSEAQRLLQEM-LVRKISPDVVTFSGLINALVKEGDLNSAQDL 244

Query: 456 FEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFG------VSID-----RGVKPDDR 504
            +EM   GV  NV+ C  L+  L  + ++ D + +F       + ID      GV+PD +
Sbjct: 245 LQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQ 304

Query: 505 LCGCLLS 511
               L+S
Sbjct: 305 TYNILIS 311



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/298 (23%), Positives = 134/298 (44%), Gaps = 13/298 (4%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F  ++ + +FP + + Y+  +       ++   ++L  EM+  +I  D +T+S +I   
Sbjct: 174 LFIEMQDKGIFP-DIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINAL 232

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS------ 286
            +    + A +  + M  +G+ P+ VT + +LD    SGK+++ L +++    S      
Sbjct: 233 VKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDA 292

Query: 287 -----GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG 341
                G +PD   +++L       G +     + +EM   G+ P+ V Y++++  + K  
Sbjct: 293 THAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQS 352

Query: 342 KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYN 401
           +   A  +FD M     +P+  T   LI  Y KA    D LEL+  M       + I Y 
Sbjct: 353 RLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYI 412

Query: 402 TLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           TL+     +G +  +  +F++M +S    PD  +   ML    S   +  A+ + EE+
Sbjct: 413 TLIRGFRKVGNINGSLDIFQEM-ISSGVYPDTITIRNMLTGLWSKEELKRALAMLEEL 469



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 131/291 (45%), Gaps = 14/291 (4%)

Query: 186 ETIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEW 244
           + + Y+  +  L + GR     + L  EM    I  D +TYS +I        + EA   
Sbjct: 151 DVVIYSAIIDGLWKDGRHTD-AQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRL 209

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
            + M    + PD VT+S +++   K G +     L +  ++SG  P+ +  + L     +
Sbjct: 210 LQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCD 269

Query: 305 SGDY-DGIRYVLQEMKSL----------GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
           SG   D +       KS+          GV+P++  YN L+  +   GK   A  L++EM
Sbjct: 270 SGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEM 329

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
              G+ PD  T +++I    K     +A ++++ M    +  + + +NTL+      G+V
Sbjct: 330 PHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMV 389

Query: 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
           ++   LF +M        +  +Y  ++  +   GN++ ++++F+EM   GV
Sbjct: 390 DDGLELFCEMGRRGIV-ANAITYITLIRGFRKVGNINGSLDIFQEMISSGV 439



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 82/177 (46%)

Query: 161 LNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIEL 220
           L   K  QKS    +   + N    +   YN+ +  L    +F   E+L  EM    I  
Sbjct: 277 LEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVP 336

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D +TYS++I    + +  DEA + F+ M      P+ VT++ ++  Y K+G V++ L L+
Sbjct: 337 DTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELF 396

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
                 G   + I +  L + F + G+ +G   + QEM S GV P+ +    +L  +
Sbjct: 397 CEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTGL 453



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 102/234 (43%), Gaps = 17/234 (7%)

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKT-----------GLMP 255
           + L  EM+S+ +  + +T +T++          +A+E F+ M K+           G+ P
Sbjct: 242 QDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEP 301

Query: 256 DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVL 315
           D  TY+ ++      GK  E   LYE     G  PD + +S +     +    D    + 
Sbjct: 302 DVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMF 361

Query: 316 QEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA 375
             M S    PN+V +NTL+    KAG       LF EM   G+  +  T   LI+ + K 
Sbjct: 362 DSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKV 421

Query: 376 RWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAER---LFEDMKLS 426
                +L++++ M  +    D I   T+ NM   +   EE +R   + E++++S
Sbjct: 422 GNINGSLDIFQEMISSGVYPDTI---TIRNMLTGLWSKEELKRALAMLEELQMS 472


>gi|255661194|gb|ACU25766.1| pentatricopeptide repeat-containing protein [Neosparton
           ephedroides]
          Length = 426

 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 84/364 (23%), Positives = 170/364 (46%), Gaps = 6/364 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K     P + + YN  +      + F+    L NEM +  +  D ++Y+
Sbjct: 60  YSKAISIFSRLKRSGFAP-DLVAYNSMINVFXKAKLFREARSLINEMRTAGVMPDTVSYT 118

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY + G  +E   L+      
Sbjct: 119 TLLTMHVENKRFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKI 178

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   ++ N+V YN+++   GK  +   A
Sbjct: 179 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKA 238

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+ K      A  L++++R +   +D +LY T++  
Sbjct: 239 NNLIQEMQNRGIEPNSITYSTIISIWVKVGKLDRAAMLFQKLRNSGVEIDQVLYQTMIVA 298

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K     +PDN      ++I  + G ++ A  +F +  + G   
Sbjct: 299 YERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAAAGRLEEATWVFRQAIDAGEVK 353

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           ++     LI    K ++  ++V VF    +R   PD  +   +L+        E    V 
Sbjct: 354 DITVFERLIHLFSKYKKYSNVVEVFDKMRERRYFPDSNVIALVLNAYGKLHEFEKANSVY 413

Query: 527 TCLQ 530
             +Q
Sbjct: 414 MEMQ 417



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/290 (29%), Positives = 147/290 (50%), Gaps = 1/290 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D  TYST+IT   +  LFD A+ W ++M +  +  D V YS ++++  K     + +S++
Sbjct: 8   DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
            R   SG+ PD +A++ +  +F ++  +   R ++ EM++ GV P+ V Y TLL    + 
Sbjct: 68  SRLKRSGFAPDLVAYNSMINVFXKAKLFREARSLINEMRTAGVMPDTVSYTTLLTMHVEN 127

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
            +   A S+F EM E     D  T   +I +YG+   AK+A +L+  MR+     + + Y
Sbjct: 128 KRFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKIGIEPNVVSY 187

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           NTLL +  D  L  EA  LF  M+  +  + +  +Y +M+ IYG     + A  L +EM 
Sbjct: 188 NTLLRVYGDAELFGEAIHLFRLMQRKN-IEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 246

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
             G+  N +  + +I    K  ++D    +F    + GV+ D  L   ++
Sbjct: 247 NRGIEPNSITYSTIISIWVKVGKLDRAAMLFQKLRNSGVEIDQVLYQTMI 296



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 125/261 (47%), Gaps = 1/261 (0%)

Query: 252 GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGI 311
            L PD  TYS ++  + K G  +  LS  ++        D + +S L ++  +  DY   
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 312 RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371
             +   +K  G  P+LV YN+++    KA     ARSL +EM  +G+ PD  + T L+ +
Sbjct: 64  ISIFSRLKRSGFAPDLVAYNSMINVFXKAKLFREARSLINEMRTAGVMPDTVSYTTLLTM 123

Query: 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
           + + +   +AL ++  MRE K  +D    N ++++   +G+ +EA++LF  M+     +P
Sbjct: 124 HVENKRFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKIG-IEP 182

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           +  SY  +L +YG       AI LF  M    +  NV+    ++   GK    +    + 
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 242

Query: 492 GVSIDRGVKPDDRLCGCLLSV 512
               +RG++P+      ++S+
Sbjct: 243 QEMQNRGIEPNSITYSTIISI 263



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/271 (23%), Positives = 137/271 (50%), Gaps = 1/271 (0%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
            +M  + +  D + YS +I  +++   + +AI  F R+ ++G  PD V Y+++++V+ K+
Sbjct: 33  QKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFAPDLVAYNSMINVFXKA 92

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
               E  SL      +G  PD ++++ L  M  E+  +     V  EM+ +    +L   
Sbjct: 93  KLFREARSLINEMRTAGVMPDTVSYTTLLTMHVENKRFLEALSVFAEMREIKCLLDLTTC 152

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
           N +++  G+ G    A  LF  M + G+ P+  +   L+++YG A    +A+ L+  M+ 
Sbjct: 153 NIMIDVYGQLGMAKEADKLFWGMRKIGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR 212

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
                + + YN+++ +       E+A  L ++M+ +   +P++ +Y+ +++I+   G +D
Sbjct: 213 KNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ-NRGIEPNSITYSTIISIWVKVGKLD 271

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
            A  LF+++   GV I+ +    +I    +A
Sbjct: 272 RAAMLFQKLRNSGVEIDQVLYQTMIVAYERA 302



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 103/244 (42%), Gaps = 36/244 (14%)

Query: 290 PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSL 349
           PD   +S L   FG+ G +D     LQ+M+   V  +LV+Y+ L+E         L+R L
Sbjct: 7   PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIE---------LSRKL 57

Query: 350 FDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCAD 409
            D                    Y KA      + ++ R++ + +  D + YN+++N+   
Sbjct: 58  CD--------------------YSKA------ISIFSRLKRSGFAPDLVAYNSMINVFXK 91

Query: 410 IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVM 469
             L  EA  L  +M+ +    PD  SYT +L ++        A+ +F EM E+   +++ 
Sbjct: 92  AKLFREARSLINEMRTAG-VMPDTVSYTTLLTMHVENKRFLEALSVFAEMREIKCLLDLT 150

Query: 470 GCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCL 529
            C  +I   G+     +  ++F      G++P+      LL V    E   +   +   +
Sbjct: 151 TCNIMIDVYGQLGMAKEADKLFWGMRKIGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLM 210

Query: 530 QQAN 533
           Q+ N
Sbjct: 211 QRKN 214



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/249 (21%), Positives = 106/249 (42%), Gaps = 5/249 (2%)

Query: 142 LRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGR 201
           +R I   P+  +    L +    + + ++   F  ++ +N+     + YN  M       
Sbjct: 175 MRKIGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNI-EQNVVTYNSMMMIYGKTL 233

Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS 261
           + +    L  EM +  IE ++ITYSTII+   +    D A   F+++  +G+  D+V Y 
Sbjct: 234 EHEKANNLIQEMQNRGIEPNSITYSTIISIWVKVGKLDRAAMLFQKLRNSGVEIDQVLYQ 293

Query: 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
            ++  Y ++G V       +R +    +PD I       +   +G  +   +V ++    
Sbjct: 294 TMIVAYERAGLVAHA----KRLLHELKRPDNIPRDTAIHILAAAGRLEEATWVFRQAIDA 349

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
           G   ++ V+  L+    K  K      +FD+M E    PD   +  ++  YGK    + A
Sbjct: 350 GEVKDITVFERLIHLFSKYKKYSNVVEVFDKMRERRYFPDSNVIALVLNAYGKLHEFEKA 409

Query: 382 LELWERMRE 390
             ++  M++
Sbjct: 410 NSVYMEMQD 418



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 87/191 (45%), Gaps = 3/191 (1%)

Query: 355 ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
           E  L+PD  T + LI  +GK      AL   ++M +++ P D +LY+ L+ +   +    
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
           +A  +F  +K S +  PD  +Y +M+N++        A  L  EM   GV  + +  T L
Sbjct: 62  KAISIFSRLKRSGFA-PDLVAYNSMINVFXKAKLFREARSLINEMRTAGVMPDTVSYTTL 120

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN- 533
           +    + +R  + + VF    +     D   C  ++ V      +++  K+   +++   
Sbjct: 121 LTMHVENKRFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKIGI 180

Query: 534 -PKLVAFLNLI 543
            P +V++  L+
Sbjct: 181 EPNVVSYNTLL 191


>gi|224130828|ref|XP_002328386.1| predicted protein [Populus trichocarpa]
 gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 85/316 (26%), Positives = 148/316 (46%), Gaps = 1/316 (0%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
            I YN  +  L       +  ++  +M  N  + + +TY+TII    +  L +EA+E+  
Sbjct: 201 VISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLS 260

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
            M   G+ PD VTY+ IL  +   G++ E   L++  V     PD + F++L     + G
Sbjct: 261 EMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLCKEG 320

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
                R V + M   G +PN   YN L++      +   A  +   M+  G  P+  +  
Sbjct: 321 MVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYN 380

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
            LI  Y K++   +A  L   M E     D + Y+TL+     +G   EA  LF++M  S
Sbjct: 381 ILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKEM-CS 439

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
               PD  +Y+ +L+ +   G++D A++L +EM E  +  N++  T LI+ +  A +++ 
Sbjct: 440 SGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRIKPNIILYTILIRGMFIAGKLEV 499

Query: 487 LVRVFGVSIDRGVKPD 502
              +F      G++PD
Sbjct: 500 AKELFSKLSADGIRPD 515



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 135/281 (48%), Gaps = 1/281 (0%)

Query: 183 FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
            P + + YN  +       Q     +L  EMV   +  D +T++ ++    +  +  EA 
Sbjct: 267 IPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEAR 326

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
              E M + G  P+  TY+A++D Y    +++E + +    +  G  P+  ++++L   +
Sbjct: 327 CVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGY 386

Query: 303 GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
            +S   +  + +L EM    + P+ V Y+TL++ + + G+P  A +LF EM  SGL PD 
Sbjct: 387 CKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSSGLLPDL 446

Query: 363 KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED 422
              + L+  + K     +AL+L + M E +   + ILY  L+      G +E A+ LF  
Sbjct: 447 MAYSILLDGFCKHGHLDEALKLLKEMHERRIKPNIILYTILIRGMFIAGKLEVAKELFSK 506

Query: 423 MKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           +  +D  +PD ++Y  M+      G  D A E F +M + G
Sbjct: 507 LS-ADGIRPDIWTYNVMIKGLLKEGLSDEAYEFFRKMEDDG 546



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 90/323 (27%), Positives = 144/323 (44%), Gaps = 1/323 (0%)

Query: 180 QNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFD 239
           QN      + YN  + SL   R      +  +EMV   I  D +TY+TI+         +
Sbjct: 229 QNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLN 288

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           EA   F+ M    +MPD VT++ ++D   K G V E   + E     G +P+   ++ L 
Sbjct: 289 EATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALM 348

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
             +      D    VL  M   G  PNL  YN L+    K+ +   A+ L  EM E  LT
Sbjct: 349 DGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLT 408

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
           PD  T + L++   +    ++AL L++ M  +    D + Y+ LL+     G ++EA +L
Sbjct: 409 PDTVTYSTLMQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKL 468

Query: 420 FEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479
            ++M      KP+   YT ++      G ++ A ELF ++S  G+  ++     +I+ L 
Sbjct: 469 LKEMH-ERRIKPNIILYTILIRGMFIAGKLEVAKELFSKLSADGIRPDIWTYNVMIKGLL 527

Query: 480 KARRIDDLVRVFGVSIDRGVKPD 502
           K    D+    F    D G  PD
Sbjct: 528 KEGLSDEAYEFFRKMEDDGFLPD 550



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/302 (24%), Positives = 148/302 (49%), Gaps = 1/302 (0%)

Query: 201 RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTY 260
           +Q+     L N+M    +  +  + + +I C  R +  D A+    +M+K G+ PD +T+
Sbjct: 110 KQYSSAVSLCNQMDLFGVTHNVYSLNVLINCLCRLSHVDFAVSVMGKMFKLGIQPDAITF 169

Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
           + +++     GK++E + L+   V SG +P+ I+++ +     ++G+      V ++M+ 
Sbjct: 170 NTLINGLCNEGKIKEAVGLFNEMVWSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQ 229

Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380
              +PN+V YNT+++++ K      A     EMV+ G+ PD  T   ++  +       +
Sbjct: 230 NRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNE 289

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
           A  L++ M       D + +N L++     G+V EA  + E M      +P+ Y+Y A++
Sbjct: 290 ATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVSETMT-EKGAEPNAYTYNALM 348

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
           + Y     +D AI++   M   G A N+     LI    K++R+++  R+     ++ + 
Sbjct: 349 DGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLT 408

Query: 501 PD 502
           PD
Sbjct: 409 PD 410



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 110/217 (50%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN+ +      ++    ++L +EM    +  D +TYST++    +     EA+  F+ M 
Sbjct: 379 YNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKEMC 438

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
            +GL+PD + YS +LD + K G ++E L L +       KP+ I +++L +    +G  +
Sbjct: 439 SSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRIKPNIILYTILIRGMFIAGKLE 498

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
             + +  ++ + G++P++  YN +++ + K G    A   F +M + G  PD  +   +I
Sbjct: 499 VAKELFSKLSADGIRPDIWTYNVMIKGLLKEGLSDEAYEFFRKMEDDGFLPDSCSYNVII 558

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
           + + + + +  A++L + M   ++  D   +  LL++
Sbjct: 559 QGFLQNQDSSTAIQLIDEMVGKRFSADSSTFQMLLDL 595



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 121/266 (45%), Gaps = 3/266 (1%)

Query: 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
            D+A+  F RM +    P  V +   L   AK  +    +SL  +    G   +  + +V
Sbjct: 77  IDDALTSFYRMVRMNPRPSVVEFGKFLGSIAKKKQYSSAVSLCNQMDLFGVTHNVYSLNV 136

Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
           L          D    V+ +M  LG+QP+ + +NTL+  +   GK   A  LF+EMV SG
Sbjct: 137 LINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWSG 196

Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN-MCADIGLVEEA 416
             P+  +   +I    K      A+ ++ +M +N+   + + YNT+++ +C D  LV EA
Sbjct: 197 HEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKD-RLVNEA 255

Query: 417 ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
                +M +     PD  +Y  +L+ + S G ++ A  LF+EM    V  + +    L+ 
Sbjct: 256 VEFLSEM-VDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVD 314

Query: 477 CLGKARRIDDLVRVFGVSIDRGVKPD 502
            L K   + +   V     ++G +P+
Sbjct: 315 GLCKEGMVSEARCVSETMTEKGAEPN 340



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 25/111 (22%), Positives = 55/111 (49%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           I Y + ++ +    + ++ ++L +++ ++ I  D  TY+ +I    +  L DEA E+F +
Sbjct: 482 ILYTILIRGMFIAGKLEVAKELFSKLSADGIRPDIWTYNVMIKGLLKEGLSDEAYEFFRK 541

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
           M   G +PD  +Y+ I+  + ++      + L +  V   +  D   F +L
Sbjct: 542 MEDDGFLPDSCSYNVIIQGFLQNQDSSTAIQLIDEMVGKRFSADSSTFQML 592


>gi|451798817|gb|AGF69112.1| PPR [Raphanus sativus]
          Length = 479

 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 88/298 (29%), Positives = 139/298 (46%), Gaps = 12/298 (4%)

Query: 216 NEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEE 275
           + I+ D + YS II    +     +A   F  M   G+ PD VTYS +++ +  SGK  E
Sbjct: 146 SHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSE 205

Query: 276 VLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLE 335
              L +  +     PD + FS L     + GD +  + +LQEM S GV PN+V  NTLL+
Sbjct: 206 AQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLD 265

Query: 336 AMGKAGKPGLARSLFDEMVES-----------GLTPDEKTLTALIKIYGKARWAKDALEL 384
            +  +GK   A  +F  M +S           G+ PD +T   LI          +A EL
Sbjct: 266 GLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEEL 325

Query: 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYG 444
           +E M       D + Y++++N       ++EA ++F+ M    +  P+  ++  ++  Y 
Sbjct: 326 YEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSF-SPNIVTFNTLITGYC 384

Query: 445 SGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
             G VD+ +ELF EM   G+  N +    LI+   K   I+  + +F   I  GV PD
Sbjct: 385 KAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPD 442



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 146/324 (45%), Gaps = 48/324 (14%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG----------K 272
           +T++T++    R     EA+   +RM + GL P+++TY  I+D   K G          K
Sbjct: 82  VTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRK 141

Query: 273 VEEV------LSLYERGVASGWK--------------------PDPIAFSVLGKMFGESG 306
           +EE+      + +Y   +   WK                    PD + +S +   F  SG
Sbjct: 142 MEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSG 201

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
            +   + +LQEM    + P++V ++ L+ A+ K G    A+ L  EM+ SG+ P+  T  
Sbjct: 202 KWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCN 261

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFI-----------LYNTLLNMCADIGLVEE 415
            L+     +   KDALE+++ M+++   +D              YN L++   + G   E
Sbjct: 262 TLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLE 321

Query: 416 AERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLI 475
           AE L+E+M       PD  +Y++M+N       +D A ++F+ M     + N++    LI
Sbjct: 322 AEELYEEMPHRGIV-PDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLI 380

Query: 476 QCLGKARRIDDLVRVFGVSIDRGV 499
               KA  +DD + +F     RG+
Sbjct: 381 TGYCKAGMVDDGLELFCEMGRRGI 404



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/307 (26%), Positives = 143/307 (46%), Gaps = 17/307 (5%)

Query: 217 EIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV 276
           +I  D  +++ +I C   C+    A+  F ++ K G  P  VT++ +L       +V E 
Sbjct: 10  QIPCDIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEA 69

Query: 277 LSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA 336
           L L+ +      KP+ + F+ L       G       +L  M   G+QPN + Y T+++ 
Sbjct: 70  LDLFHQMC----KPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDG 125

Query: 337 MGKAGKPGLARSLFDEMVE-SGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPM 395
           M K G    A +L  +M E S + PD    +A+I    K     DA  L+  M++     
Sbjct: 126 MCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFP 185

Query: 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIEL 455
           D + Y+ ++N     G   EA+RL ++M L     PD  +++ ++N     G++++A +L
Sbjct: 186 DIVTYSCMINGFCSSGKWSEAQRLLQEM-LVRKISPDVVTFSGLINALVKEGDLNSAQDL 244

Query: 456 FEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFG------VSID-----RGVKPDDR 504
            +EM   GV  NV+ C  L+  L  + ++ D + +F       + ID      GV+PD +
Sbjct: 245 LQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQ 304

Query: 505 LCGCLLS 511
               L+S
Sbjct: 305 TYNILIS 311



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/298 (23%), Positives = 134/298 (44%), Gaps = 13/298 (4%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F  ++ + +FP + + Y+  +       ++   ++L  EM+  +I  D +T+S +I   
Sbjct: 174 LFIEMQDKGIFP-DIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINAL 232

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS------ 286
            +    + A +  + M  +G+ P+ VT + +LD    SGK+++ L +++    S      
Sbjct: 233 VKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDA 292

Query: 287 -----GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG 341
                G +PD   +++L       G +     + +EM   G+ P+ V Y++++  + K  
Sbjct: 293 THAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQS 352

Query: 342 KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYN 401
           +   A  +FD M     +P+  T   LI  Y KA    D LEL+  M       + I Y 
Sbjct: 353 RLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYI 412

Query: 402 TLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           TL+     +G +  +  +F++M +S    PD  +   ML    S   +  A+ + EE+
Sbjct: 413 TLIRGFRKVGNINGSLDIFQEM-ISSGVYPDTITIRNMLTGLWSKEELKKALAMLEEL 469



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 131/291 (45%), Gaps = 14/291 (4%)

Query: 186 ETIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEW 244
           + + Y+  +  L + GR     + L  EM    I  D +TYS +I        + EA   
Sbjct: 151 DVVIYSAIIDGLWKDGRHTD-AQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRL 209

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
            + M    + PD VT+S +++   K G +     L +  ++SG  P+ +  + L     +
Sbjct: 210 LQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCD 269

Query: 305 SGDY-DGIRYVLQEMKSL----------GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
           SG   D +       KS+          GV+P++  YN L+  +   GK   A  L++EM
Sbjct: 270 SGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEM 329

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
              G+ PD  T +++I    K     +A ++++ M    +  + + +NTL+      G+V
Sbjct: 330 PHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMV 389

Query: 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
           ++   LF +M        +  +Y  ++  +   GN++ ++++F+EM   GV
Sbjct: 390 DDGLELFCEMGRRGIV-ANAITYITLIRGFRKVGNINGSLDIFQEMISSGV 439



 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 86/174 (49%)

Query: 216 NEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEE 275
           N +E D  TY+ +I+       F EA E +E M   G++PD VTYS++++   K  +++E
Sbjct: 297 NGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDE 356

Query: 276 VLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLE 335
              +++   +  + P+ + F+ L   + ++G  D    +  EM   G+  N + Y TL+ 
Sbjct: 357 ATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIR 416

Query: 336 AMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMR 389
              K G    +  +F EM+ SG+ PD  T+  ++         K AL + E ++
Sbjct: 417 GFRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTGLWSKEELKKALAMLEELQ 470



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 82/177 (46%)

Query: 161 LNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIEL 220
           L   K  QKS    +   + N    +   YN+ +  L    +F   E+L  EM    I  
Sbjct: 277 LEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVP 336

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D +TYS++I    + +  DEA + F+ M      P+ VT++ ++  Y K+G V++ L L+
Sbjct: 337 DTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELF 396

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
                 G   + I +  L + F + G+ +G   + QEM S GV P+ +    +L  +
Sbjct: 397 CEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTGL 453



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 102/234 (43%), Gaps = 17/234 (7%)

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKT-----------GLMP 255
           + L  EM+S+ +  + +T +T++          +A+E F+ M K+           G+ P
Sbjct: 242 QDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEP 301

Query: 256 DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVL 315
           D  TY+ ++      GK  E   LYE     G  PD + +S +     +    D    + 
Sbjct: 302 DVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMF 361

Query: 316 QEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA 375
             M S    PN+V +NTL+    KAG       LF EM   G+  +  T   LI+ + K 
Sbjct: 362 DSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKV 421

Query: 376 RWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAER---LFEDMKLS 426
                +L++++ M  +    D I   T+ NM   +   EE ++   + E++++S
Sbjct: 422 GNINGSLDIFQEMISSGVYPDTI---TIRNMLTGLWSKEELKKALAMLEELQMS 472


>gi|302756535|ref|XP_002961691.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
 gi|300170350|gb|EFJ36951.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
          Length = 545

 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 96/364 (26%), Positives = 174/364 (47%), Gaps = 13/364 (3%)

Query: 153 TRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANE 212
           T  N L +    +  + ++ FF     +N+F  + + YN  M         +    L  E
Sbjct: 104 TCNNLLSVYVKARRVEDAHLFFQS-HMKNVFEPDEVSYNTLMNGFFKAGDVKKALALFGE 162

Query: 213 MVSNEIEL---DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLM-PDEVTYSAILDVYA 268
           M  + I +    NI    + +  K       A E F+ M  +G+  P+ ++Y+ ++D   
Sbjct: 163 MKDSGIAVLRSHNIVLRGLCSGGK----ISMAWEVFKDM--SGIFSPNLISYTIMIDGLC 216

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           KS KV++ ++L+++ V     PD + +  L    G+         + +E ++ G  P +V
Sbjct: 217 KSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVV 276

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMV-ESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
            YNT+++ + K G+   A +L+D+MV E  L PD  T +ALI     +   + A EL+E 
Sbjct: 277 TYNTMIDGLCKCGRIENALTLYDDMVREPHLKPDMFTYSALINGLNLSNRGEKAYELYEE 336

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           M +     D + YNTLL+     G  ++A  +F  M + + C P+  +YT +++ +    
Sbjct: 337 MLDTGCSPDVVTYNTLLDGLCKSGCEDKAMEIFRKMGVGNVCDPNVITYTVLIDRFCKVD 396

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCG 507
            + +A++L +EM    +  + +  T +IQ L K  RID+   +F  SI +  KPD  L  
Sbjct: 397 RLGDAVKLAKEMEGRSLLPDAVTFTTVIQKLCKESRIDEAHELFE-SIGKTCKPDSVLFN 455

Query: 508 CLLS 511
            +L+
Sbjct: 456 TMLA 459



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 90/327 (27%), Positives = 145/327 (44%), Gaps = 4/327 (1%)

Query: 181 NLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDE 240
            +F    I Y + +  L   R+      L  +MV   I  D +TY  +I    +     E
Sbjct: 199 GIFSPNLISYTIMIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKE 258

Query: 241 AIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS-GWKPDPIAFSVLG 299
           A + FE     G  P  VTY+ ++D   K G++E  L+LY+  V     KPD   +S L 
Sbjct: 259 AYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMVREPHLKPDMFTYSALI 318

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM-VESGL 358
                S   +    + +EM   G  P++V YNTLL+ + K+G    A  +F +M V +  
Sbjct: 319 NGLNLSNRGEKAYELYEEMLDTGCSPDVVTYNTLLDGLCKSGCEDKAMEIFRKMGVGNVC 378

Query: 359 TPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAER 418
            P+  T T LI  + K     DA++L + M       D + + T++        ++EA  
Sbjct: 379 DPNVITYTVLIDRFCKVDRLGDAVKLAKEMEGRSLLPDAVTFTTVIQKLCKESRIDEAHE 438

Query: 419 LFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL 478
           LFE   +   CKPD+  +  ML  Y     +D+A +L + M + G A  +   T L+   
Sbjct: 439 LFE--SIGKTCKPDSVLFNTMLAGYCKITRIDDAKKLHDRMLDSGCAPTLATYTALVTGF 496

Query: 479 GKARRIDDLVRVFGVSIDRGVKPDDRL 505
            +  R  D + ++   I+ G  P+  L
Sbjct: 497 CRTGRYSDALIMYHEMIEMGFPPERHL 523



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 72/271 (26%), Positives = 137/271 (50%), Gaps = 2/271 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           +  T + +++   +    ++A  +F+   K    PDEV+Y+ +++ + K+G V++ L+L+
Sbjct: 101 NRFTCNNLLSVYVKARRVEDAHLFFQSHMKNVFEPDEVSYNTLMNGFFKAGDVKKALALF 160

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
                SG      + +++ +     G       V ++M  +   PNL+ Y  +++ + K+
Sbjct: 161 GEMKDSGIAV-LRSHNIVLRGLCSGGKISMAWEVFKDMSGI-FSPNLISYTIMIDGLCKS 218

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
            K   A +LF +MV+  + PD  T  ALI   GK R  K+A +L+E  R        + Y
Sbjct: 219 RKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTY 278

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           NT+++     G +E A  L++DM    + KPD ++Y+A++N        + A EL+EEM 
Sbjct: 279 NTMIDGLCKCGRIENALTLYDDMVREPHLKPDMFTYSALINGLNLSNRGEKAYELYEEML 338

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           + G + +V+    L+  L K+   D  + +F
Sbjct: 339 DTGCSPDVVTYNTLLDGLCKSGCEDKAMEIF 369



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 142/298 (47%), Gaps = 5/298 (1%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
            K+   F  +  + ++P + + Y   +  L   R+ +    L  E  +       +TY+T
Sbjct: 222 DKAITLFKQMVDKAIYP-DVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNT 280

Query: 228 IITCAKRCNLFDEAIEWFERMYKT-GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           +I    +C   + A+  ++ M +   L PD  TYSA+++    S + E+   LYE  + +
Sbjct: 281 MIDGLCKCGRIENALTLYDDMVREPHLKPDMFTYSALINGLNLSNRGEKAYELYEEMLDT 340

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGV-QPNLVVYNTLLEAMGKAGKPGL 345
           G  PD + ++ L     +SG  D    + ++M    V  PN++ Y  L++   K  + G 
Sbjct: 341 GCSPDVVTYNTLLDGLCKSGCEDKAMEIFRKMGVGNVCDPNVITYTVLIDRFCKVDRLGD 400

Query: 346 ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405
           A  L  EM    L PD  T T +I+   K     +A EL+E + +   P D +L+NT+L 
Sbjct: 401 AVKLAKEMEGRSLLPDAVTFTTVIQKLCKESRIDEAHELFESIGKTCKP-DSVLFNTMLA 459

Query: 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
               I  +++A++L + M L   C P   +YTA++  +   G   +A+ ++ EM E+G
Sbjct: 460 GYCKITRIDDAKKLHDRM-LDSGCAPTLATYTALVTGFCRTGRYSDALIMYHEMIEMG 516



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 100/193 (51%), Gaps = 4/193 (2%)

Query: 319 KSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD-EMVESGLTPDEKTLTALIKIYGKARW 377
           KSLG+  +++V + + + + +   P  A  +F     +S  T +  T   L+ +Y KAR 
Sbjct: 58  KSLGLYGDILVPDLVGKVIHRIPDPNTAWEVFQWAGKQSKFTHNRFTCNNLLSVYVKARR 117

Query: 378 AKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYT 437
            +DA   ++   +N +  D + YNTL+N     G V++A  LF +MK S        S+ 
Sbjct: 118 VEDAHLFFQSHMKNVFEPDEVSYNTLMNGFFKAGDVKKALALFGEMKDSGIAVL--RSHN 175

Query: 438 AMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDR 497
            +L    SGG +  A E+F++MS +  + N++  T +I  L K+R++D  + +F   +D+
Sbjct: 176 IVLRGLCSGGKISMAWEVFKDMSGI-FSPNLISYTIMIDGLCKSRKVDKAITLFKQMVDK 234

Query: 498 GVKPDDRLCGCLL 510
            + PD    G L+
Sbjct: 235 AIYPDVVTYGALI 247



 Score = 43.1 bits (100), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 24/115 (20%), Positives = 55/115 (47%), Gaps = 2/115 (1%)

Query: 177 IKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCN 236
           ++ ++L P    F  V  K  +  R  +  E    E +    + D++ ++T++    +  
Sbjct: 408 MEGRSLLPDAVTFTTVIQKLCKESRIDEAHELF--ESIGKTCKPDSVLFNTMLAGYCKIT 465

Query: 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291
             D+A +  +RM  +G  P   TY+A++  + ++G+  + L +Y   +  G+ P+
Sbjct: 466 RIDDAKKLHDRMLDSGCAPTLATYTALVTGFCRTGRYSDALIMYHEMIEMGFPPE 520


>gi|115441099|ref|NP_001044829.1| Os01g0852900 [Oryza sativa Japonica Group]
 gi|18461197|dbj|BAB84394.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113534360|dbj|BAF06743.1| Os01g0852900 [Oryza sativa Japonica Group]
 gi|125572662|gb|EAZ14177.1| hypothetical protein OsJ_04103 [Oryza sativa Japonica Group]
          Length = 703

 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 102/412 (24%), Positives = 195/412 (47%), Gaps = 18/412 (4%)

Query: 103 SVLSLQRQKRSTYSYNPRVR------DLKLFARKLNDCDN-----TEEAFLRAITEIPHQ 151
           + L   R   S    NP +R      D  + AR+ +D D      +  AF R I   P+ 
Sbjct: 101 AALDAFRALPSILGCNPGIRSHNALLDAFVRARRFSDADAFFASLSHGAFGRRIA--PNL 158

Query: 152 PTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLAN 211
            T    L  L +     ++   F+ ++ + + P + I Y+  M  L    +      L +
Sbjct: 159 QTYNIVLRSLCARGDLDRAVTLFDSLRRRQVAP-DRITYSTLMCGLAKQDRLDHALDLLD 217

Query: 212 EMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKT-GLMPDEVTYSAILDVYAKS 270
           EM  + ++ D + Y+ ++    +   F++ +  ++++ K  G  P+  TY+ +LD   K 
Sbjct: 218 EMPRSRVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLCKF 277

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
           G+ +EV  ++ER VA+  +PD I + +L      SGD DG   V  E+   G+  +  +Y
Sbjct: 278 GRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMY 337

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
           N+L++   +AG+   A   +D    +GL  + +T   +IK    +    +A+ELW+ + +
Sbjct: 338 NSLVKGFCQAGRVQEAWKFWDSAGFAGLR-NLRTYNIMIKGLFDSGMVDEAIELWDLLEK 396

Query: 391 NKWPM-DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNV 449
           +   + D + + TL++     G   +A  +FE+ ++S   + D +SY++M+N   + G +
Sbjct: 397 DVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGK-QLDVFSYSSMINGLCNVGRL 455

Query: 450 DNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
            +A++++E+M + G   N      LI    +  R  D VR++    D G  P
Sbjct: 456 VDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSP 507



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 88/349 (25%), Positives = 159/349 (45%), Gaps = 32/349 (9%)

Query: 165 KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIEL---- 220
           KFW  + F         L  + T  YN+ +K L             + MV   IEL    
Sbjct: 355 KFWDSAGF-------AGLRNLRT--YNIMIKGL-----------FDSGMVDEAIELWDLL 394

Query: 221 --------DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK 272
                   D +T+ T+I    +    ++A   FE    +G   D  +YS++++     G+
Sbjct: 395 EKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGR 454

Query: 273 VEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNT 332
           + + + +YE+    G KP+   ++ L   F +         +  +M   G  P ++ YNT
Sbjct: 455 LVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPTVITYNT 514

Query: 333 LLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENK 392
           L++ + KA K   A S+  EMVE+G TPD  T  +LI+     +   DAL +W+++    
Sbjct: 515 LIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQILYKG 574

Query: 393 WPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNA 452
             +D +++N L++     G V+EA  +F DMK    C P+  +Y  +++     G +D A
Sbjct: 575 LKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYNTLMDGLYETGYIDKA 634

Query: 453 IELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
             L+  ++E G+  +++     I+ L    RI + +++    + RG+ P
Sbjct: 635 ATLWTSITEDGLEPDIISYNTRIKGLCSCDRIHEGIQLLDEVLSRGIIP 683



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 79/358 (22%), Positives = 174/358 (48%), Gaps = 4/358 (1%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN+ ++SL           L + +   ++  D ITYST++    + +  D A++  + M 
Sbjct: 161 YNIVLRSLCARGDLDRAVTLFDSLRRRQVAPDRITYSTLMCGLAKQDRLDHALDLLDEMP 220

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS-GWKPDPIAFSVLGKMFGESGDY 308
           ++ + PD V Y+A+L    K+G+ E+V+ ++++ V   G +P+   ++V+     + G +
Sbjct: 221 RSRVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLCKFGRF 280

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
             +  V + M +  +QP+++ Y  L+  + ++G    A  ++ E++++GL  D     +L
Sbjct: 281 KEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSL 340

Query: 369 IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428
           +K + +A   ++A + W+         +   YN ++    D G+V+EA  L++ ++    
Sbjct: 341 VKGFCQAGRVQEAWKFWDSAGFAGL-RNLRTYNIMIKGLFDSGMVDEAIELWDLLEKDVA 399

Query: 429 CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLV 488
           C PD  ++  +++     G  + A  +FEE    G  ++V   + +I  L    R+ D V
Sbjct: 400 CIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGRLVDAV 459

Query: 489 RVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ--ANPKLVAFLNLIE 544
           +V+      G KP+  +   L+S       + D  ++ + +     +P ++ +  LI+
Sbjct: 460 KVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPTVITYNTLID 517



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 74/338 (21%), Positives = 154/338 (45%), Gaps = 38/338 (11%)

Query: 190 YNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERM 248
           YNV +  L +FGR F+ + ++   MV+N ++ D ITY  +I    R    D A   +  +
Sbjct: 267 YNVMLDGLCKFGR-FKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEI 325

Query: 249 YKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWK------------------- 289
            KTGL+ D   Y++++  + ++G+V+E    ++    +G +                   
Sbjct: 326 IKTGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLRNLRTYNIMIKGLFDSGMVD 385

Query: 290 ----------------PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTL 333
                           PD + F  L     ++G  +    + +E +  G Q ++  Y+++
Sbjct: 386 EAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSM 445

Query: 334 LEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKW 393
           +  +   G+   A  ++++M + G  P+     ALI  + +     DA+ ++ +M +N  
Sbjct: 446 INGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGC 505

Query: 394 PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAI 453
               I YNTL++        +EA  +  +M  + +  PD  +Y +++    S   +D+A+
Sbjct: 506 SPTVITYNTLIDGLCKAEKYQEASSVAREMVENGF-TPDITTYGSLIRGLFSDKKIDDAL 564

Query: 454 ELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
            +++++   G+ ++VM    LI  L  A ++D+ + VF
Sbjct: 565 SIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVF 602



 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 80/180 (44%)

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382
           + PNL  YN +L ++   G    A +LFD +    + PD  T + L+    K      AL
Sbjct: 154 IAPNLQTYNIVLRSLCARGDLDRAVTLFDSLRRRQVAPDRITYSTLMCGLAKQDRLDHAL 213

Query: 383 ELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNI 442
           +L + M  ++   D + YN LL  C   G  E+  R+++ +      +P+  +Y  ML+ 
Sbjct: 214 DLLDEMPRSRVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDG 273

Query: 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
               G      E++E M    +  +V+    LI  L ++  +D   RV+   I  G+  D
Sbjct: 274 LCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVID 333


>gi|147817754|emb|CAN66662.1| hypothetical protein VITISV_031722 [Vitis vinifera]
          Length = 1060

 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 89/319 (27%), Positives = 143/319 (44%), Gaps = 36/319 (11%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           +L +EM+  +I    + Y+ +I      +   EA   F  M  +G++P+  TY+ ++D Y
Sbjct: 214 RLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGY 273

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            K   V++ L LY   +  G  P+ + F +L     ++ +    R  L +M S GV PN+
Sbjct: 274 CKIAHVKKALELYXEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNI 333

Query: 328 VVYNTLLEAMGKAGK---------------------------PGL--------ARSLFDE 352
            VYN L++   KAG                             GL        A  L  E
Sbjct: 334 FVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQE 393

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M + G  P+  T   LI  Y K    + A+E+  +M E     + I ++TL++     G 
Sbjct: 394 MKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGK 453

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
           +E A  L+ +M +     PD  +YTA+++ +   GN   A  L +EM E G+  NV   +
Sbjct: 454 MEAAMGLYTEMVIKGLL-PDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLS 512

Query: 473 CLIQCLGKARRIDDLVRVF 491
           CLI  L K  RI D +++F
Sbjct: 513 CLIDGLCKDGRISDAIKLF 531



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 140/304 (46%), Gaps = 14/304 (4%)

Query: 212 EMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG 271
           +M S  +  +   Y+ +I    +     EA+     + K  ++PD  TYS ++       
Sbjct: 323 DMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVD 382

Query: 272 KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYN 331
           ++EE   L +     G+ P+ + ++ L   + + G+ +    V  +M   G++PN++ ++
Sbjct: 383 RMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFS 442

Query: 332 TLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE- 390
           TL++   KAGK   A  L+ EMV  GL PD    TALI  + K    K+A  L + M+E 
Sbjct: 443 TLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEA 502

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD------------YCKPDNYSYTA 438
              P  F L   +  +C D G + +A +LF     +D             C P++  YTA
Sbjct: 503 GLHPNVFTLSCLIDGLCKD-GRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTA 561

Query: 439 MLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRG 498
           ++    + G +  A + F +M   G+  +V  C  +IQ   +A  + D++ +    +  G
Sbjct: 562 LIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADILKMG 621

Query: 499 VKPD 502
           + P+
Sbjct: 622 IIPN 625



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 113/263 (42%), Gaps = 4/263 (1%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
            +  +I       L +EA+ W    YK  ++P     + +LD   K G+ + +  +Y   
Sbjct: 128 VFGVLIIAFSEMGLVEEAL-WV--YYKMDVLPAMQACNMVLDGLVKKGRFDTMWKVYGDM 184

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
           VA G  P+ + +  L       GD+     +  EM    + P +V+Y  L+  +    + 
Sbjct: 185 VARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRI 244

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
             A S+F  M  SG+ P+  T   ++  Y K    K ALEL+  M  +    + + +  L
Sbjct: 245 SEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYXEMLGDGLLPNVVTFGIL 304

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           ++       +  A +   DM  S    P+ + Y  +++ Y   GN+  A+ L  E+ +  
Sbjct: 305 IDGLCKTDEMVSARKFLIDMA-SFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHE 363

Query: 464 VAINVMGCTCLIQCLGKARRIDD 486
           +  +V   + LI+ L    R+++
Sbjct: 364 ILPDVFTYSILIKGLCGVDRMEE 386



 Score = 55.8 bits (133), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 88/202 (43%), Gaps = 22/202 (10%)

Query: 275 EVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLL 334
           + L L+ +      +PD +  +V      + G  D   ++   ++  G+  +L + N+L+
Sbjct: 732 KALQLFRQMQMDDXQPDIVTVTVALSACADLGALDMGEWIHAYIRHRGLDTDLCLNNSLI 791

Query: 335 EAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW-------ER 387
               K G+ G AR LFD   +  +T    T T++I  +     A++AL+L+       +R
Sbjct: 792 NMYSKCGEIGTARRLFDGTQKKDVT----TWTSMIVGHALHGQAEEALQLFTEMKETNKR 847

Query: 388 MRENK----------WPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYT 437
            R+NK           P D      L+  C+  GLVEE ++ F  MK     +P    + 
Sbjct: 848 ARKNKRNGEXESSLVLPNDVTFMGVLM-ACSHAGLVEEGKQHFRSMKEDYSLRPRISHFG 906

Query: 438 AMLNIYGSGGNVDNAIELFEEM 459
            M+++    G +  A E   +M
Sbjct: 907 CMVDLLCRAGLLTEAYEFILKM 928



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 66/308 (21%), Positives = 126/308 (40%), Gaps = 66/308 (21%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
           NE+  +    +++ Y+ +I          +A ++F  M  +GL PD  T   I+  + ++
Sbjct: 545 NELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRA 604

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY--------DGIR---------- 312
             + +V+ L    +  G  P+   + VL K + ESG          +G++          
Sbjct: 605 MHLRDVMMLQADILKMGIIPNSSVYRVLAKGYEESGYLKSALSFCGEGVQPLDRVNSEPW 664

Query: 313 --YVLQE-----------------MKSLGVQPNLVV--YNTLLEA------------MGK 339
             Y ++                  + + G+   +++  ++T+L+             +G+
Sbjct: 665 GSYTIRSRFQLCVVTEKKECHSSYLTAFGIHSFVLLWYFHTILKPPSPHEILKKVPFIGQ 724

Query: 340 AG--KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE----RMRENKW 393
            G  +P  A  LF +M      PD  T+T  +     A     AL++ E     +R    
Sbjct: 725 KGDQRPNKALQLFRQMQMDDXQPDIVTVTVALS----ACADLGALDMGEWIHAYIRHRGL 780

Query: 394 PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAI 453
             D  L N+L+NM +  G +  A RLF+  +     K D  ++T+M+  +   G  + A+
Sbjct: 781 DTDLCLNNSLINMYSKCGEIGTARRLFDGTQ-----KKDVTTWTSMIVGHALHGQAEEAL 835

Query: 454 ELFEEMSE 461
           +LF EM E
Sbjct: 836 QLFTEMKE 843


>gi|359491317|ref|XP_003634263.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Vitis vinifera]
          Length = 665

 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 89/319 (27%), Positives = 144/319 (45%), Gaps = 36/319 (11%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           +L +EM+  +I    + Y+ +I      +   EA   F  M  +G++P+  TY+ ++D Y
Sbjct: 214 RLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGY 273

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            K   V++ L LY+  +  G  P+ + F +L     ++ +    R  L +M S GV PN+
Sbjct: 274 CKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNI 333

Query: 328 VVYNTLLEAMGKAGK---------------------------PGL--------ARSLFDE 352
            VYN L++   KAG                             GL        A  L  E
Sbjct: 334 FVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQE 393

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M + G  P+  T   LI  Y K    + A+E+  +M E     + I ++TL++     G 
Sbjct: 394 MKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGK 453

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
           +E A  L+ +M +     PD  +YTA+++ +   GN   A  L +EM E G+  NV   +
Sbjct: 454 MEAAMGLYTEMVIKGLL-PDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLS 512

Query: 473 CLIQCLGKARRIDDLVRVF 491
           CLI  L K  RI D +++F
Sbjct: 513 CLIDGLCKDGRISDAIKLF 531



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 140/304 (46%), Gaps = 14/304 (4%)

Query: 212 EMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG 271
           +M S  +  +   Y+ +I    +     EA+     + K  ++PD  TYS ++       
Sbjct: 323 DMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVD 382

Query: 272 KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYN 331
           ++EE   L +     G+ P+ + ++ L   + + G+ +    V  +M   G++PN++ ++
Sbjct: 383 RMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFS 442

Query: 332 TLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN 391
           TL++   KAGK   A  L+ EMV  GL PD    TALI  + K    K+A  L + M+E 
Sbjct: 443 TLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEA 502

Query: 392 KW-PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD------------YCKPDNYSYTA 438
              P  F L   +  +C D G + +A +LF     +D             C P++  YTA
Sbjct: 503 GLHPNVFTLSCLIDGLCKD-GRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTA 561

Query: 439 MLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRG 498
           ++    + G +  A + F +M   G+  +V  C  +IQ   +A  + D++ +    +  G
Sbjct: 562 LIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADILKMG 621

Query: 499 VKPD 502
           + P+
Sbjct: 622 IIPN 625



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 114/263 (43%), Gaps = 4/263 (1%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
            +  +I       L +EA+ W    YK  ++P     + +LD   K G+ + +  +Y   
Sbjct: 128 VFGVLIIAFSEMGLVEEAL-WV--YYKMDVLPAMQACNMVLDGLVKKGRFDTMWKVYGDM 184

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
           VA G  P+ + +  L       GD+     +  EM    + P +V+Y  L+  +    + 
Sbjct: 185 VARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRI 244

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
             A S+F  M  SG+ P+  T   ++  Y K    K ALEL++ M  +    + + +  L
Sbjct: 245 SEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGIL 304

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           ++       +  A +   DM  S    P+ + Y  +++ Y   GN+  A+ L  E+ +  
Sbjct: 305 IDGLCKTDEMVSARKFLIDMA-SFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHE 363

Query: 464 VAINVMGCTCLIQCLGKARRIDD 486
           +  +V   + LI+ L    R+++
Sbjct: 364 ILPDVFTYSILIKGLCGVDRMEE 386


>gi|255541126|ref|XP_002511627.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548807|gb|EEF50296.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1163

 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 169/331 (51%), Gaps = 19/331 (5%)

Query: 160 ILNSLKFWQKSYFFFNWI-------KSQNLFPMETIFYNVTMKSLRFGRQFQL-IEQLAN 211
           +L  +K   K+  FFNW          Q+ F M  I      ++L   R F   I++ +N
Sbjct: 92  VLRLIKTPSKALQFFNWAPELGFTHNDQSYFLMLEILGRA--RNLNVARNFLFSIKRRSN 149

Query: 212 EMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG 271
                 ++L++  ++++I    +  LF E+++ F  M   G+ P  VT++++L +  K G
Sbjct: 150 ----GTVKLEDRFFNSLIRSYGKAGLFQESVQVFNSMKSVGVSPSVVTFNSLLLILLKRG 205

Query: 272 KVEEVLSLYERGVAS-GWKPDPIAFSVLGKMFGESGDYD-GIRYVLQEMKSLGVQPNLVV 329
           +     S+++  +++ G  PD   F++L + F ++   D G R+  +EM      P+LV 
Sbjct: 206 RTNMAQSVFDEMLSTYGVTPDTYTFNILIRGFCKNSMVDEGFRF-FKEMSRFKCDPDLVT 264

Query: 330 YNTLLEAMGKAGKPGLARSLFDEMVE--SGLTPDEKTLTALIKIYGKARWAKDALELWER 387
           YNTL++ + +AGK  +A ++ + MV+  + L PD  T T L++ Y       +AL ++E 
Sbjct: 265 YNTLVDGLCRAGKVNIAHNVVNGMVKKSTNLNPDVVTYTTLVRGYCMKHEIDEALVVFEE 324

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           M       + I YNTL+    ++  +++ +++FE         PD  +   ++N + + G
Sbjct: 325 MVSKGLKPNEITYNTLIKGLCEVQKIDKIKQIFEGALGGGGFIPDTCTLNTLMNAHCNAG 384

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCL 478
           N+++A+E+FE+M  L V  +    + LI+ L
Sbjct: 385 NLNDALEVFEKMMVLNVRPDSATYSVLIRNL 415



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 75/269 (27%), Positives = 134/269 (49%), Gaps = 6/269 (2%)

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKV---EEVLSLYERGVASGWKPDPIAFS 296
           +A+++F    + G   ++ +Y  +L++  ++  +      L   +R      K +   F+
Sbjct: 101 KALQFFNWAPELGFTHNDQSYFLMLEILGRARNLNVARNFLFSIKRRSNGTVKLEDRFFN 160

Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356
            L + +G++G +     V   MKS+GV P++V +N+LL  + K G+  +A+S+FDEM+ +
Sbjct: 161 SLIRSYGKAGLFQESVQVFNSMKSVGVSPSVVTFNSLLLILLKRGRTNMAQSVFDEMLST 220

Query: 357 -GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEE 415
            G+TPD  T   LI+ + K     +    ++ M   K   D + YNTL++     G V  
Sbjct: 221 YGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFKCDPDLVTYNTLVDGLCRAGKVNI 280

Query: 416 AERLFEDM-KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
           A  +   M K S    PD  +YT ++  Y     +D A+ +FEEM   G+  N +    L
Sbjct: 281 AHNVVNGMVKKSTNLNPDVVTYTTLVRGYCMKHEIDEALVVFEEMVSKGLKPNEITYNTL 340

Query: 475 IQCLGKARRIDDLVRVF-GVSIDRGVKPD 502
           I+ L + ++ID + ++F G     G  PD
Sbjct: 341 IKGLCEVQKIDKIKQIFEGALGGGGFIPD 369



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 146/308 (47%), Gaps = 11/308 (3%)

Query: 166 FWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSN-EIELDNIT 224
            +Q+S   FN +KS  + P    F ++ +  L+ GR   + + + +EM+S   +  D  T
Sbjct: 171 LFQESVQVFNSMKSVGVSPSVVTFNSLLLILLKRGRT-NMAQSVFDEMLSTYGVTPDTYT 229

Query: 225 YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
           ++ +I    + ++ DE   +F+ M +    PD VTY+ ++D   ++GKV    ++    V
Sbjct: 230 FNILIRGFCKNSMVDEGFRFFKEMSRFKCDPDLVTYNTLVDGLCRAGKVNIAHNVVNGMV 289

Query: 285 --ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
             ++   PD + ++ L + +    + D    V +EM S G++PN + YNTL++ + +  K
Sbjct: 290 KKSTNLNPDVVTYTTLVRGYCMKHEIDEALVVFEEMVSKGLKPNEITYNTLIKGLCEVQK 349

Query: 343 PGLARSLFD-EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYN 401
               + +F+  +   G  PD  TL  L+  +  A    DALE++E+M       D   Y+
Sbjct: 350 IDKIKQIFEGALGGGGFIPDTCTLNTLMNAHCNAGNLNDALEVFEKMMVLNVRPDSATYS 409

Query: 402 TLLNMCADIGLVEEAERLFEDMK------LSDYCKPDNYSYTAMLNIYGSGGNVDNAIEL 455
            L+      G  E AE+LF+++         D C P   +Y +M       G    A  +
Sbjct: 410 VLIRNLCQRGNFERAEQLFDELSEKEILLRDDGCTPLVAAYKSMFEFLCRNGKTAKAERV 469

Query: 456 FEEMSELG 463
           F ++ + G
Sbjct: 470 FRQLMKRG 477



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/221 (22%), Positives = 97/221 (43%), Gaps = 9/221 (4%)

Query: 206 IEQLANEMVSNEIELDNITYSTII-TCAKRCN------LFDEAIEWFERMYKTGLMPDEV 258
           +E     MV N +  D+ TYS +I    +R N      LFDE  E    +   G  P   
Sbjct: 390 LEVFEKMMVLN-VRPDSATYSVLIRNLCQRGNFERAEQLFDELSEKEILLRDDGCTPLVA 448

Query: 259 TYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEM 318
            Y ++ +   ++GK  +   ++ + +  G + DP++F +L K     G ++    +L  M
Sbjct: 449 AYKSMFEFLCRNGKTAKAERVFRQLMKRGTQ-DPLSFKILIKGHCREGTFEAGYELLVLM 507

Query: 319 KSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWA 378
                 P+L  Y +L++ + + G+P +A    ++M++S   P+  T  +++        A
Sbjct: 508 LRRDFVPDLETYQSLIDGLLQKGEPLVAYQTLEKMIKSSHVPETSTFHSILARLLAKGCA 567

Query: 379 KDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
            ++      M E K   +  L    + +    GL ++A ++
Sbjct: 568 HESARFIMLMLEGKIRQNINLSTHTVRLLFGSGLRDKAFKI 608


>gi|299473436|emb|CBN77833.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1139

 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 146/310 (47%), Gaps = 11/310 (3%)

Query: 235 CNLF----------DEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
           CN+F          D+ +  +E M    L P  VT+S ++       +V      +   +
Sbjct: 97  CNVFLRALGDAGRIDDCVAAYEAMLACQLRPTIVTFSTLISRAGACRRVRLAERFFREML 156

Query: 285 ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344
            +G  PD  A + L   F ++G  D    V  +M   GV P+++ +NTL++A G+AG   
Sbjct: 157 EAGITPDVQAINSLINAFAKAGSPDQALKVFDQMSRYGVTPSVITFNTLIDACGRAGDID 216

Query: 345 LARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
            AR +F  + ++GL+P+++T +ALI  +       +A    + MR      + + Y+ L+
Sbjct: 217 RARQVFSRLSQAGLSPNDRTFSALIHSHAVQGQVDEAFSWLQEMRARGLEPNRVTYSALI 276

Query: 405 NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
           N C   G +  A +  ++M      +P+  ++T +++  G G  ++ + +LF+EM E G 
Sbjct: 277 NACGRAGQLARAFQTLDEM-FGTGIEPNVVTWTTLIDACGKGKELEWSFKLFKEMRERGT 335

Query: 465 AINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGK 524
             N + C+ L+    KA  +D    V    +D G++P +     LL+  +    ++  G 
Sbjct: 336 VPNGVTCSALMDACLKADELDLAFAVLEHMLDVGIEPTEVTYTSLLTQCARLGQADRAGI 395

Query: 525 VITCLQQANP 534
           V+  L +  P
Sbjct: 396 VLDELNKRRP 405



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 131/261 (50%), Gaps = 1/261 (0%)

Query: 201 RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTY 260
           R+ +L E+   EM+   I  D    +++I    +    D+A++ F++M + G+ P  +T+
Sbjct: 143 RRVRLAERFFREMLEAGITPDVQAINSLINAFAKAGSPDQALKVFDQMSRYGVTPSVITF 202

Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
           + ++D   ++G ++    ++ R   +G  P+   FS L       G  D     LQEM++
Sbjct: 203 NTLIDACGRAGDIDRARQVFSRLSQAGLSPNDRTFSALIHSHAVQGQVDEAFSWLQEMRA 262

Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380
            G++PN V Y+ L+ A G+AG+   A    DEM  +G+ P+  T T LI   GK +  + 
Sbjct: 263 RGLEPNRVTYSALINACGRAGQLARAFQTLDEMFGTGIEPNVVTWTTLIDACGKGKELEW 322

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
           + +L++ MRE     + +  + L++ C     ++ A  + E M L    +P   +YT++L
Sbjct: 323 SFKLFKEMRERGTVPNGVTCSALMDACLKADELDLAFAVLEHM-LDVGIEPTEVTYTSLL 381

Query: 441 NIYGSGGNVDNAIELFEEMSE 461
                 G  D A  + +E+++
Sbjct: 382 TQCARLGQADRAGIVLDELNK 402



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 105/207 (50%), Gaps = 5/207 (2%)

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
           A +V  +  G++G  D      + M +  ++P +V ++TL+   G   +  LA   F EM
Sbjct: 96  ACNVFLRALGDAGRIDDCVAAYEAMLACQLRPTIVTFSTLISRAGACRRVRLAERFFREM 155

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
           +E+G+TPD + + +LI  + KA     AL+++++M         I +NTL++ C   G +
Sbjct: 156 LEAGITPDVQAINSLINAFAKAGSPDQALKVFDQMSRYGVTPSVITFNTLIDACGRAGDI 215

Query: 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTC 473
           + A ++F  +  +    P++ +++A+++ +   G VD A    +EM   G+  N +  + 
Sbjct: 216 DRARQVFSRLSQAGL-SPNDRTFSALIHSHAVQGQVDEAFSWLQEMRARGLEPNRVTYSA 274

Query: 474 LIQCLGK----ARRIDDLVRVFGVSID 496
           LI   G+    AR    L  +FG  I+
Sbjct: 275 LINACGRAGQLARAFQTLDEMFGTGIE 301



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 88/212 (41%), Gaps = 45/212 (21%)

Query: 314  VLQEMKSLGVQPNLVVYNTLLEAMGKAGK----PGLARSLFDEMVESGLTPDEKTLTALI 369
            V QEM+S GV+P+L  YN L+      G+     G+ R + D+    GL PD  T T+LI
Sbjct: 881  VFQEMRSRGVRPDLRAYNALVNTCADLGEFDRALGVVRLMVDDGEGGGLQPDAVTYTSLI 940

Query: 370  KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK----- 424
            K   +A   +                                 VEEAE +F  M+     
Sbjct: 941  KAAARAVPPR---------------------------------VEEAEEIFATMQQRTNH 967

Query: 425  LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484
             S + +P   +Y  ++       +   A+E++ +    GVA         +   G A  +
Sbjct: 968  FSTFARPTEVTYAHLMRASVMAEDYGRALEIWRQQLSAGVAPGPRSTRAALAACGGAGDV 1027

Query: 485  DDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLC 516
            D  ++V+ V  + G++P+ R    LL +V+LC
Sbjct: 1028 DTALQVYDVMREGGIRPNSR---ALLDLVNLC 1056



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 88/465 (18%), Positives = 174/465 (37%), Gaps = 84/465 (18%)

Query: 130 KLNDCDNTEEAFLRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWI---KSQNLFPME 186
           +  D D   + F R +++    P       +++S     +    F+W+   +++ L P  
Sbjct: 211 RAGDIDRARQVFSR-LSQAGLSPNDRTFSALIHSHAVQGQVDEAFSWLQEMRARGLEPNR 269

Query: 187 TIF---YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTII-TCAK--------- 233
             +    N   ++ +  R FQ ++    EM    IE + +T++T+I  C K         
Sbjct: 270 VTYSALINACGRAGQLARAFQTLD----EMFGTGIEPNVVTWTTLIDACGKGKELEWSFK 325

Query: 234 -------------------------RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
                                    + +  D A    E M   G+ P EVTY+++L   A
Sbjct: 326 LFKEMRERGTVPNGVTCSALMDACLKADELDLAFAVLEHMLDVGIEPTEVTYTSLLTQCA 385

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIR---YVLQEMKSLGVQP 325
           + G+ +    + +    +  +P+  +    G   G++   + +R   +V  + +S   + 
Sbjct: 386 RLGQADRAGIVLDE--LNKRRPNSSSSGGGGGRNGDTNAAEFVREVGHVDSDTRSSSGRG 443

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVES------------GLTPDEKTLTAL----- 368
             +      EA G+     +A ++  +  +S            G+TP    +  +     
Sbjct: 444 TGIGDVARKEAAGRGPATAMAGTVSADPADSENVTEAFFSGTVGITPGPAGIDTIAGPNP 503

Query: 369 ----------IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAER 418
                     I   G       + E         W M+  L + LL +      V+ A +
Sbjct: 504 LPPPMATAEAITRGGATTGEGGSGETATARGRGAWRMNRKLESDLLQLFGQADQVDAAFK 563

Query: 419 LFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE--MSELGVAINVMGCTCLIQ 476
           + E M +     PD  ++  +LN   + G +D A+EL E       G  IN +  + L+ 
Sbjct: 564 VLEGM-VERRDSPDGETWLLLLNAVDTAGALDKAVELMERSRAEGHGSEINELTYSALLG 622

Query: 477 CLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSED 521
             G+A+++    R+     + GVKP +   G  L+++ +C  S D
Sbjct: 623 ACGRAKKLARAFRIVQSMRETGVKPTE---GTYLALMEVCRHSRD 664



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 70/155 (45%), Gaps = 3/155 (1%)

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
           N  + + LL+  G+A +   A  + + MVE   +PD +T   L+     A     A+EL 
Sbjct: 541 NRKLESDLLQLFGQADQVDAAFKVLEGMVERRDSPDGETWLLLLNAVDTAGALDKAVELM 600

Query: 386 ERMRENKWPMDF--ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIY 443
           ER R      +   + Y+ LL  C     +  A R+ + M+ +   KP   +Y A++ + 
Sbjct: 601 ERSRAEGHGSEINELTYSALLGACGRAKKLARAFRIVQSMRETGV-KPTEGTYLALMEVC 659

Query: 444 GSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL 478
               +   A+E+FE M   GV   V   T L++ +
Sbjct: 660 RHSRDSKAAVEVFEAMETEGVRPGVRSYTSLLKAI 694



 Score = 46.6 bits (109), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 62/137 (45%), Gaps = 6/137 (4%)

Query: 203 FQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPD--EVTY 260
           F+++E     MV      D  T+  ++         D+A+E  ER    G   +  E+TY
Sbjct: 562 FKVLEG----MVERRDSPDGETWLLLLNAVDTAGALDKAVELMERSRAEGHGSEINELTY 617

Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
           SA+L    ++ K+     + +    +G KP    +  L ++   S D      V + M++
Sbjct: 618 SALLGACGRAKKLARAFRIVQSMRETGVKPTEGTYLALMEVCRHSRDSKAAVEVFEAMET 677

Query: 321 LGVQPNLVVYNTLLEAM 337
            GV+P +  Y +LL+A+
Sbjct: 678 EGVRPGVRSYTSLLKAI 694



 Score = 45.4 bits (106), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 71/176 (40%), Gaps = 33/176 (18%)

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
           + +  D A +  E M +    PD  T+  +L+    +G +++ + L ER  A G      
Sbjct: 554 QADQVDAAFKVLEGMVERRDSPDGETWLLLLNAVDTAGALDKAVELMERSRAEGH----- 608

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
                                       G + N + Y+ LL A G+A K   A  +   M
Sbjct: 609 ----------------------------GSEINELTYSALLGACGRAKKLARAFRIVQSM 640

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCAD 409
            E+G+ P E T  AL+++   +R +K A+E++E M           Y +LL   ++
Sbjct: 641 RETGVKPTEGTYLALMEVCRHSRDSKAAVEVFEAMETEGVRPGVRSYTSLLKAISE 696



 Score = 45.4 bits (106), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 37/170 (21%), Positives = 74/170 (43%), Gaps = 13/170 (7%)

Query: 169  KSYFFFNWIKSQNLFPMETIFYNVTMKSL----RFGRQFQLIEQLANEMVSNEIELDNIT 224
            + +  F  ++S+ + P +   YN  + +      F R   ++  + ++     ++ D +T
Sbjct: 877  RVFLVFQEMRSRGVRP-DLRAYNALVNTCADLGEFDRALGVVRLMVDDGEGGGLQPDAVT 935

Query: 225  YSTIITCAKRC--NLFDEAIEWFERM------YKTGLMPDEVTYSAILDVYAKSGKVEEV 276
            Y+++I  A R      +EA E F  M      + T   P EVTY+ ++     +      
Sbjct: 936  YTSLIKAAARAVPPRVEEAEEIFATMQQRTNHFSTFARPTEVTYAHLMRASVMAEDYGRA 995

Query: 277  LSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
            L ++ + +++G  P P +        G +GD D    V   M+  G++PN
Sbjct: 996  LEIWRQQLSAGVAPGPRSTRAALAACGGAGDVDTALQVYDVMREGGIRPN 1045



 Score = 42.0 bits (97), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 81/190 (42%), Gaps = 4/190 (2%)

Query: 253 LMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIR 312
           L P   T  AI    A +G+     +   RG  + W+ +    S L ++FG++   D   
Sbjct: 504 LPPPMATAEAITRGGATTGEGGSGETATARGRGA-WRMNRKLESDLLQLFGQADQVDAAF 562

Query: 313 YVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD--EKTLTALIK 370
            VL+ M      P+   +  LL A+  AG    A  L +     G   +  E T +AL+ 
Sbjct: 563 KVLEGMVERRDSPDGETWLLLLNAVDTAGALDKAVELMERSRAEGHGSEINELTYSALLG 622

Query: 371 IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCK 430
             G+A+    A  + + MRE         Y  L+ +C      + A  +FE M+ ++  +
Sbjct: 623 ACGRAKKLARAFRIVQSMRETGVKPTEGTYLALMEVCRHSRDSKAAVEVFEAME-TEGVR 681

Query: 431 PDNYSYTAML 440
           P   SYT++L
Sbjct: 682 PGVRSYTSLL 691



 Score = 40.0 bits (92), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 41/86 (47%)

Query: 219 ELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS 278
           E++ +TYS ++    R      A    + M +TG+ P E TY A+++V   S   +  + 
Sbjct: 611 EINELTYSALLGACGRAKKLARAFRIVQSMRETGVKPTEGTYLALMEVCRHSRDSKAAVE 670

Query: 279 LYERGVASGWKPDPIAFSVLGKMFGE 304
           ++E     G +P   +++ L K   E
Sbjct: 671 VFEAMETEGVRPGVRSYTSLLKAISE 696


>gi|242069877|ref|XP_002450215.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
 gi|241936058|gb|EES09203.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
          Length = 862

 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 143/316 (45%), Gaps = 1/316 (0%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
            + YN  +  L   +     E +   M+   ++LD +TYSTII    +    D A    +
Sbjct: 199 VVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQ 258

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
            M   G+ PD VTY+ I+D   K+  V+    + +  +  G KPD + ++ +     ++ 
Sbjct: 259 HMIDKGVKPDVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQ 318

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
             D    VLQ M    V+P++  YN L+      G+        +EM   GL PD  T +
Sbjct: 319 AVDRADGVLQHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYS 378

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
            L+    K     +A +++  M       +  +Y  LL+  A  G + +   L  D+ ++
Sbjct: 379 LLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLTDLL-DLMVA 437

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
           +   P+NY +  +L  Y     +D A+ +F  MS+ G++ +V+    LI  L K  R+DD
Sbjct: 438 NGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVDD 497

Query: 487 LVRVFGVSIDRGVKPD 502
            V  F   I+ GV P+
Sbjct: 498 AVLKFNQMINDGVTPN 513



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 145/318 (45%), Gaps = 1/318 (0%)

Query: 185 METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEW 244
           ++ + Y+  +  L   +     E +   M+   ++ D +TY+TII    +    D A   
Sbjct: 232 LDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRAEGV 291

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
            + M   G+ PD VTY+ I+D   K+  V+    + +  +    KPD   ++ L   +  
Sbjct: 292 LQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQHMIDKDVKPDIQTYNCLIHGYLS 351

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
           +G++  +   L+EM + G+ P++V Y+ LL+ + K GK   AR +F  M+  G+ P+   
Sbjct: 352 TGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTI 411

Query: 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
              L+  Y       D  +L + M  N    +  ++N +L   A   +++EA  +F  M 
Sbjct: 412 YGILLHGYAARGAIADLTDLLDLMVANGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMS 471

Query: 425 LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484
                 PD  +Y  +++     G VD+A+  F +M   GV  N +    L+  L    R 
Sbjct: 472 QHGL-SPDVVTYGILIDALCKLGRVDDAVLKFNQMINDGVTPNSVVFNSLVYGLCTVDRW 530

Query: 485 DDLVRVFGVSIDRGVKPD 502
           +    +F    D+GV+P+
Sbjct: 531 EKAEELFFEMWDQGVRPN 548



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 78/335 (23%), Positives = 166/335 (49%), Gaps = 4/335 (1%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYST 227
           ++   F+ +    L P + + Y + + +L + GR    + +  N+M+++ +  +++ +++
Sbjct: 462 EAMHIFSRMSQHGLSP-DVVTYGILIDALCKLGRVDDAVLKF-NQMINDGVTPNSVVFNS 519

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           ++      + +++A E F  M+  G+ P+ V ++ I+      G+V     L +     G
Sbjct: 520 LVYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVG 579

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
            +P+ I+++ L      +G  D    +L  M S+G++P+L+ Y+TLL    K G+   A 
Sbjct: 580 VRPNVISYNTLIGGHCLAGRTDEAAQLLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAY 639

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
            LF EM+  G+TP   T + +++     R   +A EL+  M ++    D   YN +LN  
Sbjct: 640 CLFREMLRKGVTPGAVTYSTILQGLFHTRRFSEAKELYLNMIKSGQQWDIYTYNIILNGL 699

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
                V+EA ++F+ +   D  +P+  ++T M+++   GG   +A++LF  +   G+  N
Sbjct: 700 CKTNCVDEAFKIFQSLCSKDL-RPNIITFTIMIDVLFKGGRKKDAMDLFASIPSHGLVPN 758

Query: 468 VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           V+    +++ + +   +D+   +F      G  PD
Sbjct: 759 VVTYCIMMKNIIQEGLLDEFDNLFLAMEKSGCTPD 793



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 145/324 (44%), Gaps = 15/324 (4%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + YN  +  L   +     E +   M+   ++ D +TY+TII    +    D A    
Sbjct: 268 DVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVL 327

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           + M    + PD  TY+ ++  Y  +G+ +EV+   E   A G  PD + +S+L     ++
Sbjct: 328 QHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKN 387

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G     R +   M   G++PN+ +Y  LL      G       L D MV +G++P+    
Sbjct: 388 GKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLTDLLDLMVANGISPNNYIF 447

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
             ++  Y K     +A+ ++ RM ++    D + Y  L++    +G V++A   F  M +
Sbjct: 448 NIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVDDAVLKFNQM-I 506

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLI-------QCL 478
           +D   P++  + +++    +    + A ELF EM + GV  NV+    ++       Q +
Sbjct: 507 NDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNTIMCNLCNEGQVM 566

Query: 479 GKARRIDDLVRVFGVSIDRGVKPD 502
              R ID + RV       GV+P+
Sbjct: 567 VAQRLIDSMERV-------GVRPN 583



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/372 (21%), Positives = 160/372 (43%), Gaps = 11/372 (2%)

Query: 111 KRSTYSYNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTRENALLILNSLKF---- 166
           + S +  +P V    +    L      ++A L+   ++ +     N++ + NSL +    
Sbjct: 469 RMSQHGLSPDVVTYGILIDALCKLGRVDDAVLK-FNQMINDGVTPNSV-VFNSLVYGLCT 526

Query: 167 ---WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNI 223
              W+K+   F  +  Q + P   +F+N  M +L    Q  + ++L + M    +  + I
Sbjct: 527 VDRWEKAEELFFEMWDQGVRP-NVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVI 585

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           +Y+T+I         DEA +  + M   GL PD ++Y  +L  Y K+G+++    L+   
Sbjct: 586 SYNTLIGGHCLAGRTDEAAQLLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAYCLFREM 645

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
           +  G  P  + +S + +    +  +   + +   M   G Q ++  YN +L  + K    
Sbjct: 646 LRKGVTPGAVTYSTILQGLFHTRRFSEAKELYLNMIKSGQQWDIYTYNIILNGLCKTNCV 705

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
             A  +F  +    L P+  T T +I +  K    KDA++L+  +  +    + + Y  +
Sbjct: 706 DEAFKIFQSLCSKDLRPNIITFTIMIDVLFKGGRKKDAMDLFASIPSHGLVPNVVTYCIM 765

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           +      GL++E + LF  M+ S  C PD+    A++      G +  A     ++ E+ 
Sbjct: 766 MKNIIQEGLLDEFDNLFLAMEKSG-CTPDSVMLNAIIRSLLGRGEIMRAGAYLSKIDEMN 824

Query: 464 VAINVMGCTCLI 475
            ++     + LI
Sbjct: 825 FSLEASTTSLLI 836



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 118/268 (44%), Gaps = 4/268 (1%)

Query: 239 DEAIEWFERMYKTG---LMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAF 295
           +EA+E    M + G     P+ VTY+ I+D   K+  V+    + +  +  G K D + +
Sbjct: 178 EEALELLHTMAEDGGGNCTPNVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKLDVVTY 237

Query: 296 SVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVE 355
           S +     ++   D    VLQ M   GV+P++V YNT+++ + KA     A  +   M++
Sbjct: 238 STIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRAEGVLQHMID 297

Query: 356 SGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEE 415
            G+ PD  T   +I    KA+    A  + + M +     D   YN L++     G  +E
Sbjct: 298 KGVKPDVVTYNTIIDGLCKAQAVDRADGVLQHMIDKDVKPDIQTYNCLIHGYLSTGEWKE 357

Query: 416 AERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLI 475
             R  E+M       PD  +Y+ +L+     G    A ++F  M   G+  NV     L+
Sbjct: 358 VVRRLEEMYARGL-DPDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGILL 416

Query: 476 QCLGKARRIDDLVRVFGVSIDRGVKPDD 503
                   I DL  +  + +  G+ P++
Sbjct: 417 HGYAARGAIADLTDLLDLMVANGISPNN 444



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 130/285 (45%), Gaps = 9/285 (3%)

Query: 234 RCNLFDE-AIEWFERMYKT---GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWK 289
           RC+   E A+  F RM +     + PD  TYS +   + + G++E   + +   + +GW+
Sbjct: 63  RCSSTSELAVSLFNRMARACSNKVRPDLCTYSILTGCFCRLGRIEHGFAAFGLILKTGWR 122

Query: 290 PDPIAFSVLGKMFGESGDYD-GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348
            + +  + L     ++   D  +  +L+ M   G  PN+V  NTLL+ +    +   A  
Sbjct: 123 VNEVVINQLLNGLCDAKRVDEAMDILLRRMPEFGCMPNVVSCNTLLKGLCNEKRVEEALE 182

Query: 349 LFDEMVESG---LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405
           L   M E G    TP+  T   +I    KA+    A  + + M +    +D + Y+T+++
Sbjct: 183 LLHTMAEDGGGNCTPNVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIID 242

Query: 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
                  V+ AE + + M +    KPD  +Y  +++       VD A  + + M + GV 
Sbjct: 243 GLCKAQAVDRAEGVLQHM-IDKGVKPDVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVK 301

Query: 466 INVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
            +V+    +I  L KA+ +D    V    ID+ VKPD +   CL+
Sbjct: 302 PDVVTYNTIIDGLCKAQAVDRADGVLQHMIDKDVKPDIQTYNCLI 346



 Score = 89.0 bits (219), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 147/349 (42%), Gaps = 43/349 (12%)

Query: 204 QLIEQLANEMV---SNEIELDNITYSTIITCAKR-------------------------- 234
           +L   L N M    SN++  D  TYS +  C  R                          
Sbjct: 69  ELAVSLFNRMARACSNKVRPDLCTYSILTGCFCRLGRIEHGFAAFGLILKTGWRVNEVVI 128

Query: 235 -------CNL--FDEAIE-WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
                  C+    DEA++    RM + G MP+ V+ + +L       +VEE L L     
Sbjct: 129 NQLLNGLCDAKRVDEAMDILLRRMPEFGCMPNVVSCNTLLKGLCNEKRVEEALELLHTMA 188

Query: 285 ASG---WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG 341
             G     P+ + ++ +     ++   D    VLQ M   GV+ ++V Y+T+++ + KA 
Sbjct: 189 EDGGGNCTPNVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQ 248

Query: 342 KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYN 401
               A  +   M++ G+ PD  T   +I    KA+    A  + + M +     D + YN
Sbjct: 249 AVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYN 308

Query: 402 TLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461
           T+++       V+ A+ + + M   D  KPD  +Y  +++ Y S G     +   EEM  
Sbjct: 309 TIIDGLCKAQAVDRADGVLQHMIDKDV-KPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYA 367

Query: 462 LGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
            G+  +V+  + L+  L K  +  +  ++F   I +G+KP+  + G LL
Sbjct: 368 RGLDPDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGILL 416



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/218 (20%), Positives = 103/218 (47%), Gaps = 1/218 (0%)

Query: 170 SYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTII 229
           +Y  F  +  + + P   + Y+  ++ L   R+F   ++L   M+ +  + D  TY+ I+
Sbjct: 638 AYCLFREMLRKGVTP-GAVTYSTILQGLFHTRRFSEAKELYLNMIKSGQQWDIYTYNIIL 696

Query: 230 TCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWK 289
               + N  DEA + F+ +    L P+ +T++ ++DV  K G+ ++ + L+    + G  
Sbjct: 697 NGLCKTNCVDEAFKIFQSLCSKDLRPNIITFTIMIDVLFKGGRKKDAMDLFASIPSHGLV 756

Query: 290 PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSL 349
           P+ + + ++ K   + G  D    +   M+  G  P+ V+ N ++ ++   G+   A + 
Sbjct: 757 PNVVTYCIMMKNIIQEGLLDEFDNLFLAMEKSGCTPDSVMLNAIIRSLLGRGEIMRAGAY 816

Query: 350 FDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
             ++ E   + +  T + LI ++ +  +   A  L E+
Sbjct: 817 LSKIDEMNFSLEASTTSLLISLFSREEYKNHAKSLPEK 854


>gi|413917008|gb|AFW56940.1| plastid transcriptionally active 12-like protein [Zea mays]
          Length = 600

 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 93/357 (26%), Positives = 170/357 (47%), Gaps = 9/357 (2%)

Query: 158 LLILNSLKFWQKSYFFFNWIKSQNLFPM-ETIFYNVTMKSLRFGRQFQLIEQLANEMVSN 216
           L+    LK W        W+++Q+ +   E  F  +     + G  F   E++   M   
Sbjct: 111 LIRFKQLKKWNIVSEILEWLRTQHWWDFSEMDFLMLVTAYGKLG-DFSRAERVLKYMNKK 169

Query: 217 EIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV 276
             +   I+ + ++    R   + +A   F RM  +G  P  VTY  IL    +  K +E 
Sbjct: 170 GYQPSVISQTGLMEAYGRGKQYRKAEAVFRRMQTSGPQPSPVTYQIILKSLVEGDKYKEA 229

Query: 277 LSLYERGV---ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTL 333
            +++E  +    + +KPD   F ++  M+ ++GDY   R +  +M   G+  + V +N+L
Sbjct: 230 EAIFEDLLNEKRTSFKPDQKMFHMMIYMYKKAGDYAQARKLFAQMSERGIPLSTVTFNSL 289

Query: 334 LEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKW 393
           +    +  +     +++D+M  +GL PD  + + LIK YGKAR  ++AL ++E M +   
Sbjct: 290 MSFETEYKE---VSNIYDQMQRAGLKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGV 346

Query: 394 PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAI 453
                 YN LL+  A  GLVEEA  +F  M+     +PD  SYT M+  Y +   ++ A 
Sbjct: 347 RPTRKSYNILLDAFAISGLVEEANTVFRAMR-RHRVEPDLCSYTTMVLAYVNASEMNGAE 405

Query: 454 ELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
           + F  + E G+  NV+    L++   K   ++ ++RV+     +GV+P+  +   ++
Sbjct: 406 KFFRRIKEDGLKPNVVVYGTLMKGYSKLNNLEKVMRVYERMRIQGVEPNQTIYTTIM 462



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 137/297 (46%), Gaps = 17/297 (5%)

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG---KVEEVLSLYERGVASGWK 289
           K+ N+  E +EW    +       E+ +  ++  Y K G   + E VL    +    G++
Sbjct: 118 KKWNIVSEILEWLRTQHWWDF--SEMDFLMLVTAYGKLGDFSRAERVLKYMNK---KGYQ 172

Query: 290 PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSL 349
           P  I+ + L + +G    Y     V + M++ G QP+ V Y  +L+++ +  K   A ++
Sbjct: 173 PSVISQTGLMEAYGRGKQYRKAEAVFRRMQTSGPQPSPVTYQIILKSLVEGDKYKEAEAI 232

Query: 350 FDEMV---ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
           F++++    +   PD+K    +I +Y KA     A +L+ +M E   P+  + +N+L++ 
Sbjct: 233 FEDLLNEKRTSFKPDQKMFHMMIYMYKKAGDYAQARKLFAQMSERGIPLSTVTFNSLMSF 292

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
             +    +E   +++ M+ +   KPD  SY+ ++  YG     + A+ +FEEM + GV  
Sbjct: 293 ETE---YKEVSNIYDQMQRAG-LKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRP 348

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVG 523
                  L+     +  +++   VF       V+PD  LC     V++    SE  G
Sbjct: 349 TRKSYNILLDAFAISGLVEEANTVFRAMRRHRVEPD--LCSYTTMVLAYVNASEMNG 403



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/254 (22%), Positives = 120/254 (47%), Gaps = 3/254 (1%)

Query: 179 SQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLF 238
           S+   P+ T+ +N  M    F  +++ +  + ++M    ++ D ++YS +I    +    
Sbjct: 275 SERGIPLSTVTFNSLMS---FETEYKEVSNIYDQMQRAGLKPDVVSYSLLIKAYGKARRE 331

Query: 239 DEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
           +EA+  FE M   G+ P   +Y+ +LD +A SG VEE  +++        +PD  +++ +
Sbjct: 332 EEALAVFEEMLDAGVRPTRKSYNILLDAFAISGLVEEANTVFRAMRRHRVEPDLCSYTTM 391

Query: 299 GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
              +  + + +G     + +K  G++PN+VVY TL++   K         +++ M   G+
Sbjct: 392 VLAYVNASEMNGAEKFFRRIKEDGLKPNVVVYGTLMKGYSKLNNLEKVMRVYERMRIQGV 451

Query: 359 TPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAER 418
            P++   T ++   G+     +A+  ++ M    +P D    N LL++       +EA  
Sbjct: 452 EPNQTIYTTIMDAQGRNSDFGNAVIWFKEMEARGYPPDQKAKNILLSLAKTPEEEQEAND 511

Query: 419 LFEDMKLSDYCKPD 432
           L  +  +    KPD
Sbjct: 512 LVGNGPVQLEVKPD 525



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 132/284 (46%), Gaps = 13/284 (4%)

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
           W    + F +L   +G+ GD+     VL+ M   G QP+++    L+EA G+  +   A 
Sbjct: 136 WDFSEMDFLMLVTAYGKLGDFSRAERVLKYMNKKGYQPSVISQTGLMEAYGRGKQYRKAE 195

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM---RENKWPMDFILYNTLL 404
           ++F  M  SG  P   T   ++K   +    K+A  ++E +   +   +  D  +++ ++
Sbjct: 196 AVFRRMQTSGPQPSPVTYQIILKSLVEGDKYKEAEAIFEDLLNEKRTSFKPDQKMFHMMI 255

Query: 405 NMCADIGLVEEAERLFEDMKLSDYCKP-DNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
            M    G   +A +LF  M  S+   P    ++ ++++       V N   ++++M   G
Sbjct: 256 YMYKKAGDYAQARKLFAQM--SERGIPLSTVTFNSLMSFETEYKEVSN---IYDQMQRAG 310

Query: 464 VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVG 523
           +  +V+  + LI+  GKARR ++ + VF   +D GV+P  +    LL   ++    E+  
Sbjct: 311 LKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKSYNILLDAFAISGLVEEAN 370

Query: 524 KVITCLQ--QANPKLVAFLNLIED--NSTGFENIKEEFRNVIKD 563
            V   ++  +  P L ++  ++    N++     ++ FR + +D
Sbjct: 371 TVFRAMRRHRVEPDLCSYTTMVLAYVNASEMNGAEKFFRRIKED 414


>gi|296085006|emb|CBI28421.3| unnamed protein product [Vitis vinifera]
          Length = 740

 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 155/338 (45%), Gaps = 2/338 (0%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            ++ +  + L P  T+ YN  +  L  G +F    ++ + M  +    +  TY+ II   
Sbjct: 360 LYHKMLKEGLVP-NTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGL 418

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
                 ++A+  FE+M K G +P  VTY+ +++ Y   G V     L +    +G +PD 
Sbjct: 419 CLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDE 478

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
             ++ L   F + G  +   +  QEM   G+ PN V Y  L++   K GK  +A SL   
Sbjct: 479 WTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKR 538

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M E G  P+ ++  A+I    K     +A ++ ++M E     + I Y TL++     G 
Sbjct: 539 MEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGR 598

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
            + A ++F DM+    C P+ Y+Y++++      G  D A  L +EM   G+A + +  T
Sbjct: 599 TQFAFKIFHDME-KRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFT 657

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
            LI       RID    +    +D G KP+ R    LL
Sbjct: 658 SLIDGFVVLGRIDHAFLLLRRMVDMGCKPNYRTYSVLL 695



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/307 (25%), Positives = 144/307 (46%), Gaps = 2/307 (0%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           F+W++        T  YN  +K L  G   +    L  +M+        +TY+T+I    
Sbjct: 396 FHWMEGHGSLA-NTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYL 454

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
                + A    + M + G  PDE TY+ ++  ++K GK+E     ++  V  G  P+P+
Sbjct: 455 TKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPV 514

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
           +++ L     + G  D    +L+ M+ +G  PN+  YN ++  + K  +   A  + D+M
Sbjct: 515 SYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKM 574

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
           VE GL P+  T T LI    +    + A +++  M + K   +   Y++L+      G  
Sbjct: 575 VEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKA 634

Query: 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTC 473
           +EAE L ++M+      PD  ++T++++ +   G +D+A  L   M ++G   N    + 
Sbjct: 635 DEAEILLKEMERKGL-APDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDMGCKPNYRTYSV 693

Query: 474 LIQCLGK 480
           L++ L K
Sbjct: 694 LLKGLQK 700



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 141/303 (46%), Gaps = 2/303 (0%)

Query: 200 GRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVT 259
           GR  + ++ L  EM+   IE    TY+  IT        +EAIE   RM K G  P+  T
Sbjct: 282 GRVDEALDML-EEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQT 340

Query: 260 YSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMK 319
           Y+A++   ++ GK+E  + LY + +  G  P+ + ++ L       G +     +   M+
Sbjct: 341 YTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWME 400

Query: 320 SLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAK 379
             G   N   YN +++ +   G    A  LF++M++ G  P   T   LI  Y       
Sbjct: 401 GHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVN 460

Query: 380 DALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAM 439
           +A  L + M+EN    D   YN L++  +  G +E A   F++M +     P+  SYTA+
Sbjct: 461 NAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEM-VECGLNPNPVSYTAL 519

Query: 440 LNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGV 499
           ++ +   G VD A+ L + M E+G   NV     +I  L K  R  +  ++    +++G+
Sbjct: 520 IDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGL 579

Query: 500 KPD 502
            P+
Sbjct: 580 LPN 582



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/302 (25%), Positives = 134/302 (44%), Gaps = 1/302 (0%)

Query: 201 RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTY 260
           R   L   + + MV    + +++TYST+I         DEA++  E M + G+ P   TY
Sbjct: 247 RNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTY 306

Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
           +  +         EE + L  R    G +P+   ++ L       G  +    +  +M  
Sbjct: 307 TLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLK 366

Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380
            G+ PN V YN L+  +   G+   A  +F  M   G   + +T   +IK        + 
Sbjct: 367 EGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEK 426

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
           A+ L+E+M +       + YNTL+N     G V  A RL + MK  + C+PD ++Y  ++
Sbjct: 427 AMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMK-ENGCEPDEWTYNELV 485

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
           + +   G +++A   F+EM E G+  N +  T LI    K  ++D  + +     + G  
Sbjct: 486 SGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCN 545

Query: 501 PD 502
           P+
Sbjct: 546 PN 547



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 66/290 (22%), Positives = 129/290 (44%), Gaps = 3/290 (1%)

Query: 192 VTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKT 251
           + +K+ R   + + +    NE+          + +T++    +  + + A   +++M  +
Sbjct: 133 LMIKACRNEEEIRRVADFLNEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNS 192

Query: 252 GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGI 311
           G+ P  +T++ ++++ +K GKV E   +  +       PD   ++ L      + + D  
Sbjct: 193 GIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLA 252

Query: 312 RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371
             V   M   G  PN V Y+TL+  +   G+   A  + +EM+E G+ P   T T  I  
Sbjct: 253 FGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITA 312

Query: 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
                  ++A+EL  RM++     +   Y  L++  + +G +E A  L+  M L +   P
Sbjct: 313 LCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKM-LKEGLVP 371

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ--CLG 479
           +  +Y A++N    GG    A+++F  M   G   N      +I+  CLG
Sbjct: 372 NTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLG 421



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 96/201 (47%), Gaps = 3/201 (1%)

Query: 315 LQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK 374
           L E+  +G   +L   NTLL  + K      AR+L+ +M+ SG+ P   T   LI I  K
Sbjct: 151 LNEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSK 210

Query: 375 ARWAKDALELWERMRENKWPMDFILYNTL-LNMCADIGLVEEAERLFEDMKLSDYCKPDN 433
               ++A  +  ++ +     D   Y +L L  C +  L + A  +F+ M + + C P++
Sbjct: 211 KGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNL-DLAFGVFDRM-VKEGCDPNS 268

Query: 434 YSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGV 493
            +Y+ ++N   + G VD A+++ EEM E G+   V   T  I  L      ++ + +   
Sbjct: 269 VTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVAR 328

Query: 494 SIDRGVKPDDRLCGCLLSVVS 514
              RG +P+ +    L+S +S
Sbjct: 329 MKKRGCRPNVQTYTALISGLS 349


>gi|147779268|emb|CAN70089.1| hypothetical protein VITISV_038171 [Vitis vinifera]
          Length = 838

 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/341 (24%), Positives = 158/341 (46%), Gaps = 1/341 (0%)

Query: 183 FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
           FP   + YN  +  L  G   Q   ++   M  +  +    TY+ +I    + +    A+
Sbjct: 164 FPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTMLINLYGKASKSYMAL 223

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
           + F  M      P+  T++A+++ +A+ G  E+   ++E+   +G +PD  A++ L + +
Sbjct: 224 KVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAY 283

Query: 303 GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
             +G   G   +   M+ +G +P+   YN +++A G+AG    A+++F+ M   G+TP  
Sbjct: 284 SRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTM 343

Query: 363 KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED 422
           K+   L+  Y +A       E+  +M ++    D  + N++LN+   +G  E+ E +   
Sbjct: 344 KSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTA 403

Query: 423 MKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKAR 482
           M+   Y   D  +Y  ++NIYG  G      ELF  +    +  +V+  T  I    + +
Sbjct: 404 MEKGPY-PADISTYNILINIYGRAGFFARMEELFRSLPARNLIPDVVTWTSRIGAYSRRK 462

Query: 483 RIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVG 523
           + +  + VF   ID G  PD      +L  V++   S  VG
Sbjct: 463 QYNRCLEVFEEMIDAGCYPDGGTAKNVLLKVAIFMASFLVG 503



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 118/510 (23%), Positives = 213/510 (41%), Gaps = 23/510 (4%)

Query: 176 WIKSQNLFPMETIF---YNVTMKSLRFGRQFQLIEQLANEMV-SNEIELDNITYSTIITC 231
           W    +L P  T +    NV ++ LR  +Q+  I  +   ++  +    D I Y+ +I  
Sbjct: 49  WGSLDSLSPNHTTWDDIINVAVQ-LRLNKQWDAIVLICGWILYRSSFHPDVICYNLLIDA 107

Query: 232 AKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291
             + +L+ +A   +  + +   +P E TY+ +L  Y  SG +E+  +++      G+ P 
Sbjct: 108 YGQKSLYKKAESTYLELLEARCVPTEDTYALLLKAYCTSGLLEKAEAVFAEMRKYGFPPS 167

Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
            + ++       + GD      + + MK    QP+   Y  L+   GKA K  +A  +F 
Sbjct: 168 AVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTMLINLYGKASKSYMALKVFH 227

Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411
           EM      P+  T TAL+  + +    + A E++E+++E     D   YN L+   +  G
Sbjct: 228 EMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAG 287

Query: 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC 471
               A  +F  M+    C+PD  SY  M++ YG  G  ++A  +FE M  LG+   +   
Sbjct: 288 FPYGAAEIFSLMQHMG-CEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSH 346

Query: 472 TCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ 531
             L+    +A ++     +       G+KPD  +   +L++       E + +V+T +++
Sbjct: 347 MLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAMEK 406

Query: 532 A-NPKLVAFLNL---IEDNSTGFENIKEEF-----RNVIKDTEVDARRPFCNCLIDICRN 582
              P  ++  N+   I   +  F  ++E F     RN+I D      R      I     
Sbjct: 407 GPYPADISTYNILINIYGRAGFFARMEELFRSLPARNLIPDVVTWTSR------IGAYSR 460

Query: 583 RNLNERAHELLYLGTLYGLYP--GLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAKIV 640
           R    R  E+       G YP  G     L + ++ + S  VG+A  +       +   +
Sbjct: 461 RKQYNRCLEVFEEMIDAGCYPDGGTAKNVLLKVAIFMASFLVGSASPSPFSPTAPILGSI 520

Query: 641 LREEVLPQLFLAETGTGTHKFSQGLATAFA 670
           LR     +L +A        +S G  T FA
Sbjct: 521 LRSLGFRELSVAAYSLTESPWSGGPYTIFA 550



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 78/339 (23%), Positives = 150/339 (44%), Gaps = 2/339 (0%)

Query: 165 KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNIT 224
           K W        WI  ++ F  + I YN+ + +      ++  E    E++         T
Sbjct: 76  KQWDAIVLICGWILYRSSFHPDVICYNLLIDAYGQKSLYKKAESTYLELLEARCVPTEDT 135

Query: 225 YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
           Y+ ++       L ++A   F  M K G  P  V Y+A +D   K G  ++ + ++ER  
Sbjct: 136 YALLLKAYCTSGLLEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMK 195

Query: 285 ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344
               +P    +++L  ++G++        V  EM+S   +PN+  +  L+ A  + G   
Sbjct: 196 RDRCQPSTATYTMLINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCE 255

Query: 345 LARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
            A  +F+++ E+GL PD     AL++ Y +A +   A E++  M+      D   YN ++
Sbjct: 256 KAEEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMV 315

Query: 405 NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
           +     GL E+A+ +FE MK      P   S+  +L+ Y   G V    E+  +M + G+
Sbjct: 316 DAYGRAGLHEDAQAVFEVMKRLG-ITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGI 374

Query: 465 AINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
             +      ++   G+  + + +  V   ++++G  P D
Sbjct: 375 KPDTFVLNSMLNLYGRLGQFEKMEEVL-TAMEKGPYPAD 412


>gi|449507709|ref|XP_004163108.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 999

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/343 (27%), Positives = 159/343 (46%), Gaps = 9/343 (2%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           ++ +EM++  ++L+ +TY+ +I    +     +A+  F  M   G+ PD  TY+ ++D Y
Sbjct: 367 RIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGY 426

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            KS  + +   L     A    P P  +SVL      S D      VL +M   GV+PN+
Sbjct: 427 LKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNV 486

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
            +Y TL++A  +  +  +A  L   M+ +G+ PD      LI    +A+  ++A  L   
Sbjct: 487 FMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVD 546

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           M E     +   Y   +N+ +  G ++ AER F+DM LS    P+N  YT ++  +   G
Sbjct: 547 MGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDM-LSSGIVPNNVIYTILIKGHCDVG 605

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCG 507
           N   A+  F+ M E G+  ++   + +I  L K  +  + + VF   +  GV PD  L  
Sbjct: 606 NTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYN 665

Query: 508 CLLSVVSLCETSEDVGKVITCLQQA-----NPKLVAFLNLIED 545
            L+S    C+   D+ K      +      NP +V +  LI D
Sbjct: 666 SLIS--GFCKEG-DIEKASQLYDEMLHNGINPNIVVYNTLIND 705



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 97/386 (25%), Positives = 178/386 (46%), Gaps = 20/386 (5%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           Y+V +  L      Q   ++ ++M+ N ++ +   Y T+I    + + ++ AIE  + M 
Sbjct: 454 YSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMI 513

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
             G++PD   Y+ ++    ++ KVEE   L       G KP+   +     ++ +SG+  
Sbjct: 514 ANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQ 573

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
                 ++M S G+ PN V+Y  L++     G    A S F  M+E GL PD +  +A+I
Sbjct: 574 VAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAII 633

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
               K    K+A+ ++ +  +     D  LYN+L++     G +E+A +L+++M L +  
Sbjct: 634 HSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEM-LHNGI 692

Query: 430 KPDNYSYTAMLNIYG--SGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
            P+   Y  ++N YG    GN+  A +LF+EM   G++ +      LI   GK   ++  
Sbjct: 693 NPNIVVYNTLINDYGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKA 752

Query: 488 VRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQ--------QANPKLVAF 539
           + +F  +  + V       G L +  SL ++    GKVI   +        +  P +V +
Sbjct: 753 LSLFHEAQQKSV-------GSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTY 805

Query: 540 LNLIEDNSTGFENIKEEFRNVIKDTE 565
             LI+  + G   + EE   +  D E
Sbjct: 806 TILID--AYGKAEMMEEAEQLFLDME 829



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 82/310 (26%), Positives = 154/310 (49%), Gaps = 5/310 (1%)

Query: 209 LANEMVSNEIELDN----ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAIL 264
           +  +MV +E+E +      TY+  I    +    DEA+E  + M + GL PD  TY+ ++
Sbjct: 259 IKGKMVLSEMEKECKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLV 318

Query: 265 DVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQ 324
           D + K  + +E   ++E   +SG  P+   ++ L   F + G+ +    +  EM + G++
Sbjct: 319 DGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLK 378

Query: 325 PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384
            N+V YN ++  + KAG+   A SLF+EM+ +G+ PD  T   LI  Y K+     A EL
Sbjct: 379 LNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKACEL 438

Query: 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYG 444
              M+  K       Y+ L++       +++A  + + M + +  KP+ + Y  ++  Y 
Sbjct: 439 LAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQM-IRNGVKPNVFMYGTLIKAYV 497

Query: 445 SGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR 504
                + AIEL + M   GV  ++    CLI  L +A+++++   +     ++G+KP+  
Sbjct: 498 QESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAH 557

Query: 505 LCGCLLSVVS 514
             G  +++ S
Sbjct: 558 TYGAFINLYS 567



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 142/304 (46%), Gaps = 45/304 (14%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA--KSGKVEEVLS 278
           D   Y+++I+   +    ++A + ++ M   G+ P+ V Y+ +++ Y   KSG + E   
Sbjct: 660 DVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINDYGYCKSGNLTEAFK 719

Query: 279 LYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQE--MKSLGVQPNLVVYNTLLEA 336
           L++  ++ G  PD   + +L    G+ G+ +    +  E   KS+G   +L  +N+L+++
Sbjct: 720 LFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVG---SLSAFNSLIDS 776

Query: 337 MGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMD 396
             K GK   AR LFD+MV+  LTP+  T T LI  YGKA                     
Sbjct: 777 FCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAE-------------------- 816

Query: 397 FILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELF 456
                          ++EEAE+LF DM+  +   P+  +YT++L  Y   GN    I LF
Sbjct: 817 ---------------MMEEAEQLFLDMETRNII-PNTLTYTSLLLSYNQIGNRFKMISLF 860

Query: 457 EEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLC 516
           ++M   G+A + +    +     K  +  + +++   S+  G+K +D +   L  +  LC
Sbjct: 861 KDMEARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEGIKLEDDVFDAL--IFHLC 918

Query: 517 ETSE 520
           +  +
Sbjct: 919 KEKQ 922



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 132/295 (44%), Gaps = 14/295 (4%)

Query: 225 YSTIITCAK------RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKV---EE 275
           + T+I C        + N+     + +  M +  ++PD  TY+ ++  + K G V   + 
Sbjct: 204 FPTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKM 263

Query: 276 VLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLE 335
           VLS  E+      KP+   ++       ++G  D    V + M   G+ P+   Y  L++
Sbjct: 264 VLSEMEKEC----KPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVD 319

Query: 336 AMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPM 395
              K  +   A+ +F+ M  SGL P+  T TALI  + K    ++AL + + M      +
Sbjct: 320 GFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKL 379

Query: 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIEL 455
           + + YN ++   A  G + +A  LF +M ++   +PD ++Y  +++ Y    ++  A EL
Sbjct: 380 NVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAG-IEPDTWTYNLLIDGYLKSHDMAKACEL 438

Query: 456 FEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
             EM    +  +    + LI  L  +  +     V    I  GVKP+  + G L+
Sbjct: 439 LAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLI 493



 Score = 62.4 bits (150), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 96/217 (44%), Gaps = 35/217 (16%)

Query: 320 SLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK--------I 371
           S G  P L+  N L+  + KA   GL   ++  MVE+ + PD  T T +IK        I
Sbjct: 200 SEGFFPTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVI 259

Query: 372 YGKARWAK--------------------------DALELWERMRENKWPMDFILYNTLLN 405
            GK   ++                          +ALE+ + M E     D   Y  L++
Sbjct: 260 KGKMVLSEMEKECKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVD 319

Query: 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
                   +EA+ +FE M  S    P+ ++YTA+++ +   GN++ A+ + +EM   G+ 
Sbjct: 320 GFCKQKRSKEAKLIFESMP-SSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLK 378

Query: 466 INVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           +NV+    +I  + KA  +   + +F   +  G++PD
Sbjct: 379 LNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGIEPD 415



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 44/197 (22%), Positives = 95/197 (48%), Gaps = 2/197 (1%)

Query: 199 FGRQFQLIE--QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPD 256
           F +  ++IE  +L ++MV  ++  + +TY+ +I    +  + +EA + F  M    ++P+
Sbjct: 777 FCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPN 836

Query: 257 EVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQ 316
            +TY+++L  Y + G   +++SL++   A G   D IA+ V+   + + G       +L 
Sbjct: 837 TLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKLLN 896

Query: 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
           +    G++    V++ L+  + K  +      L  EM +  L+   KT   L+  + K+ 
Sbjct: 897 KSLVEGIKLEDDVFDALIFHLCKEKQISTVLELLSEMGKEELSLSSKTCNTLLLGFYKSG 956

Query: 377 WAKDALELWERMRENKW 393
              +A ++   M+   W
Sbjct: 957 NEDEASKVLGVMQRLGW 973


>gi|186510147|ref|NP_188293.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274280|sp|Q9LUR2.1|PP238_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g16710, mitochondrial; Flags: Precursor
 gi|11994626|dbj|BAB02763.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642334|gb|AEE75855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 507

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 156/320 (48%), Gaps = 5/320 (1%)

Query: 191 NVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYK 250
           +V  K  R+     L EQ+    +   +   NI    +   ++ C     A  +  +M K
Sbjct: 91  SVIAKMNRYDVVISLFEQMQILGIPPLLCTCNIVMHCVCLSSQPC----RASCFLGKMMK 146

Query: 251 TGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDG 310
            G  PD VT++++L+ Y    ++E+ ++L+++ +  G+KP+ + ++ L +   ++   + 
Sbjct: 147 LGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNH 206

Query: 311 IRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK 370
              +  +M + G +PN+V YN L+  + + G+ G A  L  +M++  + P+  T TALI 
Sbjct: 207 AVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALID 266

Query: 371 IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCK 430
            + K     +A EL+  M +     D   Y +L+N     GL++EA ++F  M+  + C 
Sbjct: 267 AFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLME-RNGCY 325

Query: 431 PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRV 490
           P+   YT +++ +     V++ +++F EMS+ GV  N +  T LIQ      R D    V
Sbjct: 326 PNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEV 385

Query: 491 FGVSIDRGVKPDDRLCGCLL 510
           F     R   PD R    LL
Sbjct: 386 FNQMSSRRAPPDIRTYNVLL 405



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 88/368 (23%), Positives = 157/368 (42%), Gaps = 5/368 (1%)

Query: 139 EAFLRAITEIPHQPTRENALLILNSLKFWQK---SYFFFNWIKSQNLFPMETIFYNVTMK 195
             FL  + ++  +P       +LN    W +   +   F+ I      P   + Y   ++
Sbjct: 138 SCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKP-NVVTYTTLIR 196

Query: 196 SLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMP 255
            L   R      +L N+M +N    + +TY+ ++T       + +A      M K  + P
Sbjct: 197 CLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEP 256

Query: 256 DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVL 315
           + +T++A++D + K GK+ E   LY   +     PD   +  L       G  D  R + 
Sbjct: 257 NVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMF 316

Query: 316 QEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA 375
             M+  G  PN V+Y TL+    K+ +      +F EM + G+  +  T T LI+ Y   
Sbjct: 317 YLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLV 376

Query: 376 RWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYS 435
                A E++ +M   + P D   YN LL+     G VE+A  +FE M+  +    +  +
Sbjct: 377 GRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREM-DINIVT 435

Query: 436 YTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSI 495
           YT ++      G V++A +LF  +   G+  NV+  T +I    +   I +   +F    
Sbjct: 436 YTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMK 495

Query: 496 DRGVKPDD 503
           + G  P++
Sbjct: 496 EDGFLPNE 503



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 138/294 (46%), Gaps = 1/294 (0%)

Query: 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
           F++A++ F RM  +  +P  + ++ +L V AK  + + V+SL+E+    G  P     ++
Sbjct: 64  FNDALDLFTRMVHSRPLPSIIDFTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTCNI 123

Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
           +      S         L +M  LG +P+LV + +LL       +   A +LFD+++  G
Sbjct: 124 VMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMG 183

Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417
             P+  T T LI+   K R    A+EL+ +M  N    + + YN L+    +IG   +A 
Sbjct: 184 FKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAA 243

Query: 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
            L  DM +    +P+  ++TA+++ +   G +  A EL+  M ++ V  +V     LI  
Sbjct: 244 WLLRDM-MKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLING 302

Query: 478 LGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ 531
           L     +D+  ++F +    G  P++ +   L+      +  ED  K+   + Q
Sbjct: 303 LCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQ 356



 Score = 75.9 bits (185), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 110/244 (45%), Gaps = 1/244 (0%)

Query: 259 TYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEM 318
           +Y  IL     + +  + L L+ R V S   P  I F+ L  +  +   YD +  + ++M
Sbjct: 50  SYRKILRNGLHNLQFNDALDLFTRMVHSRPLPSIIDFTRLLSVIAKMNRYDVVISLFEQM 109

Query: 319 KSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWA 378
           + LG+ P L   N ++  +  + +P  A     +M++ G  PD  T T+L+  Y      
Sbjct: 110 QILGIPPLLCTCNIVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRI 169

Query: 379 KDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTA 438
           +DA+ L++++    +  + + Y TL+        +  A  LF  M  ++  +P+  +Y A
Sbjct: 170 EDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMG-TNGSRPNVVTYNA 228

Query: 439 MLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRG 498
           ++      G   +A  L  +M +  +  NV+  T LI    K  ++ +   ++ V I   
Sbjct: 229 LVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMS 288

Query: 499 VKPD 502
           V PD
Sbjct: 289 VYPD 292



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 70/153 (45%), Gaps = 2/153 (1%)

Query: 179 SQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCN-L 237
           SQ      TI Y V ++      +  + +++ N+M S     D  TY+ ++     CN  
Sbjct: 355 SQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLD-GLCCNGK 413

Query: 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
            ++A+  FE M K  +  + VTY+ I+    K GKVE+   L+    + G KP+ I ++ 
Sbjct: 414 VEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTT 473

Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
           +   F   G       + ++MK  G  PN  VY
Sbjct: 474 MISGFCRRGLIHEADSLFKKMKEDGFLPNESVY 506


>gi|449531231|ref|XP_004172591.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like, partial [Cucumis sativus]
          Length = 602

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/364 (25%), Positives = 162/364 (44%), Gaps = 36/364 (9%)

Query: 183 FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
           F    I YN  +      +    + ++ + M  N ++ +  TY+ +I    R +  +EA 
Sbjct: 219 FKPSVITYNTLLNGYIEIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAE 278

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
           + F+ M K G+ PD   Y++I++   K G ++    L++        P+   +  L    
Sbjct: 279 KLFDEMLKKGIEPDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGA 338

Query: 303 GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG--------------------- 341
            ++G+      ++ +M+S GV  N V++NTL++   K G                     
Sbjct: 339 CKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDA 398

Query: 342 ------KPGLARS--------LFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
                   G  RS        L   M E G+ P+  + + LI IY K +   +A  L++ 
Sbjct: 399 FTCNIIASGFCRSNRREEAKRLLLTMEERGVAPNVVSFSILIDIYCKEQNFAEARRLFKV 458

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           M +       + YN  +      G +EEA +L  +M+      PD Y+YT++++   + G
Sbjct: 459 MEKKGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLM-PDTYTYTSLIDGERASG 517

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCG 507
           NVD A+ELF EM +LG+  NV+  T +I  L K  R D+  +++      G+ PDD +  
Sbjct: 518 NVDRALELFNEMPQLGLNRNVVTYTVIISGLSKDGRADEAFKLYDEMNKEGIVPDDGIYS 577

Query: 508 CLLS 511
            L++
Sbjct: 578 SLIA 581



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 130/284 (45%), Gaps = 1/284 (0%)

Query: 219 ELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS 278
           E+D  +    +   KR    +  +E+  +M  +G+     +++A++D   K G+V    +
Sbjct: 150 EIDERSCFEFLLALKRSGNMELCVEFLRQMVDSGIEIRVCSWTAVVDGLCKKGEVVRAKA 209

Query: 279 LYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMG 338
           L +  V  G+KP  I ++ L   + E  D  G+  +L  M+   V  N+  Y  L+E   
Sbjct: 210 LMDELVCKGFKPSVITYNTLLNGYIEIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYS 269

Query: 339 KAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFI 398
           ++ K   A  LFDEM++ G+ PD    T++I    K    K A  L++ M E +   +  
Sbjct: 270 RSSKIEEAEKLFDEMLKKGIEPDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAY 329

Query: 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458
            Y  L+N     G ++ AE +  DM+ S     +   +  +++ Y   G +D A+ L   
Sbjct: 330 TYGALINGACKAGEMKAAEMMVNDMQ-SKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNI 388

Query: 459 MSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           M + G  I+   C  +     ++ R ++  R+     +RGV P+
Sbjct: 389 MQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTMEERGVAPN 432



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 140/277 (50%), Gaps = 10/277 (3%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           ++++  F+ +  + L P    +  +   + + G + +  E + N+M S  ++++ + ++T
Sbjct: 310 KRAFVLFDEMTERRLVPNAYTYGALINGACKAG-EMKAAEMMVNDMQSKGVDVNRVIFNT 368

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEE----VLSLYERG 283
           ++    +  + DEA+     M + G   D  T + I   + +S + EE    +L++ ERG
Sbjct: 369 LMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTMEERG 428

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
           VA    P+ ++FS+L  ++ +  ++   R + + M+  G  P++V YN  +E   K GK 
Sbjct: 429 VA----PNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKM 484

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
             A  L +EM E GL PD  T T+LI     +     ALEL+  M +     + + Y  +
Sbjct: 485 EEAYKLINEMQERGLMPDTYTYTSLIDGERASGNVDRALELFNEMPQLGLNRNVVTYTVI 544

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
           ++  +  G  +EA +L+++M   +   PD+  Y++++
Sbjct: 545 ISGLSKDGRADEAFKLYDEMN-KEGIVPDDGIYSSLI 580



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 95/204 (46%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           +L N M     E+D  T + I +   R N  +EA      M + G+ P+ V++S ++D+Y
Sbjct: 384 RLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTMEERGVAPNVVSFSILIDIY 443

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            K     E   L++     G  P  + ++   + + + G  +    ++ EM+  G+ P+ 
Sbjct: 444 CKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPDT 503

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
             Y +L++    +G    A  LF+EM + GL  +  T T +I    K   A +A +L++ 
Sbjct: 504 YTYTSLIDGERASGNVDRALELFNEMPQLGLNRNVVTYTVIISGLSKDGRADEAFKLYDE 563

Query: 388 MRENKWPMDFILYNTLLNMCADIG 411
           M +     D  +Y++L+     +G
Sbjct: 564 MNKEGIVPDDGIYSSLIASLHKVG 587


>gi|242082678|ref|XP_002441764.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
 gi|241942457|gb|EES15602.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
          Length = 695

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 154/331 (46%), Gaps = 4/331 (1%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F  +K+    P + + YN  +         + +EQL +EM  +    D +TY+ +I C 
Sbjct: 222 LFVRMKAMGCSP-DVVTYNSLIDGYGKCGDLEEVEQLVSEMRKSGCAADVVTYNALINCF 280

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +    ++A  +F  M + G++ + VT+S  +D + K G V+E + L+ +    G  P+ 
Sbjct: 281 SKFGRMEKAYSYFGEMKRQGVVANVVTFSTFVDAFCKEGLVQEAMKLFAQMRVRGMMPNE 340

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
             ++ L     ++G  D    +L EM   G+ PN+V Y  +++ + K GK   A ++   
Sbjct: 341 FTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAEADNVLSL 400

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL-NMCADIG 411
           M   G+  +E   T LI  +     ++ AL+L  +M+     +D  LY TL+  +C D  
Sbjct: 401 MERGGVKANELLYTTLIHGHFMNNNSERALDLLNQMKNKGMELDVSLYGTLIWGLCKDQK 460

Query: 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC 471
            V+EA+ L   M      +P+   YT +++     G    A+ L  ++ + G   NV+  
Sbjct: 461 -VDEAKSLLHKMAGCGL-RPNTVIYTTIMDALFKAGKESEAVALLHKILDSGFQPNVVTY 518

Query: 472 TCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
             LI  L KA  I + +  F    + G+ P+
Sbjct: 519 CALIDGLCKAGSISEAISHFNKMRELGLDPN 549



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 122/251 (48%), Gaps = 1/251 (0%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L N+M +  +ELD   Y T+I    +    DEA     +M   GL P+ V Y+ I+D   
Sbjct: 432 LLNQMKNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTIMDALF 491

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           K+GK  E ++L  + + SG++P+ + +  L     ++G          +M+ LG+ PN+ 
Sbjct: 492 KAGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSISEAISHFNKMRELGLDPNVQ 551

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            Y  L++   K G    A  L +EM++ G++ D+   T+LI  Y K    +DA  L  +M
Sbjct: 552 AYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSLIDGYMKQANLQDAFALKTKM 611

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
            E+   +D   Y   ++   ++ +++EA  +  +M +     PD   Y  ++  Y   GN
Sbjct: 612 IESGLQLDLYCYTCFISGFCNMNMMQEARGVLSEM-IGTGITPDKTVYNCLIRKYQKLGN 670

Query: 449 VDNAIELFEEM 459
           ++ A  L  EM
Sbjct: 671 MEEASSLQNEM 681



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 94/356 (26%), Positives = 161/356 (45%), Gaps = 7/356 (1%)

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           EA   F RM   G  PD VTY++++D Y K G +EEV  L      SG   D + ++ L 
Sbjct: 218 EARALFVRMKAMGCSPDVVTYNSLIDGYGKCGDLEEVEQLVSEMRKSGCAADVVTYNALI 277

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
             F + G  +       EMK  GV  N+V ++T ++A  K G    A  LF +M   G+ 
Sbjct: 278 NCFSKFGRMEKAYSYFGEMKRQGVVANVVTFSTFVDAFCKEGLVQEAMKLFAQMRVRGMM 337

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
           P+E T T+L+    KA    DA+ L + M       + + Y  +++     G V EA+ +
Sbjct: 338 PNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAEADNV 397

Query: 420 FEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479
              M+     K +   YT +++ +    N + A++L  +M   G+ ++V     LI  L 
Sbjct: 398 LSLMERGGV-KANELLYTTLIHGHFMNNNSERALDLLNQMKNKGMELDVSLYGTLIWGLC 456

Query: 480 KARRIDDLVRVFGVSIDRGVKPDDRLCGCLL-SVVSLCETSEDVGKVITCLQQA-NPKLV 537
           K +++D+   +       G++P+  +   ++ ++    + SE V  +   L     P +V
Sbjct: 457 KDQKVDEAKSLLHKMAGCGLRPNTVIYTTIMDALFKAGKESEAVALLHKILDSGFQPNVV 516

Query: 538 AFLNLIEDNSTGFENIKEEFR--NVIKDTEVDARRPFCNCLID-ICRNRNLNERAH 590
            +  LI D      +I E     N +++  +D        LID  C+  +LN+  H
Sbjct: 517 TYCALI-DGLCKAGSISEAISHFNKMRELGLDPNVQAYTALIDGFCKIGSLNKAMH 571



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 73/338 (21%), Positives = 139/338 (41%), Gaps = 37/338 (10%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
             + +  Q L P   + Y V +  L    +    + + + M    ++ + + Y+T+I   
Sbjct: 362 LLDEMVHQGLVP-NVVTYTVMVDGLCKEGKVAEADNVLSLMERGGVKANELLYTTLIHGH 420

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
              N  + A++   +M   G+  D   Y  ++    K  KV+E  SL  +    G +P+ 
Sbjct: 421 FMNNNSERALDLLNQMKNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNT 480

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           + ++ +     ++G       +L ++   G QPN+V Y  L++ + KAG    A S F++
Sbjct: 481 VIYTTIMDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSISEAISHFNK 540

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M E GL P+ +  TALI  + K      A+ L   M +    +D ++Y +L++     G 
Sbjct: 541 MRELGLDPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSLID-----GY 595

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
           +++A                               N+ +A  L  +M E G+ +++   T
Sbjct: 596 MKQA-------------------------------NLQDAFALKTKMIESGLQLDLYCYT 624

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
           C I        + +   V    I  G+ PD  +  CL+
Sbjct: 625 CFISGFCNMNMMQEARGVLSEMIGTGITPDKTVYNCLI 662



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 94/212 (44%), Gaps = 5/212 (2%)

Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
           P     L  +  + G  D     L  ++ L V PN    N +L  + +  + GL R LFD
Sbjct: 134 PSVVDTLLSLLADHGLLDDAVRALARVRQLRVPPNTRTCNHILLRLARNRQGGLVRRLFD 193

Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411
            +      P+  T   +I    K     +A  L+ RM+      D + YN+L++     G
Sbjct: 194 LLP----VPNVFTFNIVIDFLCKEGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCG 249

Query: 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC 471
            +EE E+L  +M+ S  C  D  +Y A++N +   G ++ A   F EM   GV  NV+  
Sbjct: 250 DLEEVEQLVSEMRKSG-CAADVVTYNALINCFSKFGRMEKAYSYFGEMKRQGVVANVVTF 308

Query: 472 TCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
           +  +    K   + + +++F     RG+ P++
Sbjct: 309 STFVDAFCKEGLVQEAMKLFAQMRVRGMMPNE 340


>gi|410110091|gb|AFV61125.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           micrantha]
          Length = 406

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/366 (22%), Positives = 172/366 (46%), Gaps = 6/366 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K     P + + YN  +      + F+    L +EM +  +  +  +YS
Sbjct: 32  YSKAISIFSRLKRSGFTP-DLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYS 90

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY + G  +E   L+      
Sbjct: 91  TLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 150

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   ++ N+V YN+++   GK  +   A
Sbjct: 151 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKA 210

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R +   +D IL+ T++  
Sbjct: 211 NNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVA 270

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K     +PDN      ++I    G ++ A  +F +  + G A 
Sbjct: 271 YERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEAK 325

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           ++     +I  L K ++  ++V VF      G  PD  +   +L+     +  +    V 
Sbjct: 326 DITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSNVIAVVLNAYGKLQEFDKANDVY 385

Query: 527 TCLQQA 532
             +Q+ 
Sbjct: 386 MEMQEV 391



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/262 (29%), Positives = 133/262 (50%), Gaps = 7/262 (2%)

Query: 242 IEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKM 301
           + W ++M +  +  D V YS ++++  K     + +S++ R   SG+ PD +A++ +  +
Sbjct: 1   LSWLQKMEQDQVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINV 60

Query: 302 FGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD 361
           FG++  +   R ++ EMK+ GV PN   Y+TLL    +  K   A S+F EM E     D
Sbjct: 61  FGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLD 120

Query: 362 EKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFE 421
             T   +I +YG+   AK+A +L+  MR+     + + YNTLL +  D  L  EA  LF 
Sbjct: 121 LTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFR 180

Query: 422 DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
            M+  +  + +  +Y +M+ IYG     + A  L +EM   G+  N +  + +I   GK 
Sbjct: 181 LMQRKN-IEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKV 239

Query: 482 RRIDDLVRVF------GVSIDR 497
            ++D    +F      GV ID+
Sbjct: 240 GKLDRAAMLFQKLRSSGVEIDQ 261



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 139/271 (51%), Gaps = 1/271 (0%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
            +M  +++  D + YS +I  +++   + +AI  F R+ ++G  PD V Y+A+++V+ K+
Sbjct: 5   QKMEQDQVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKA 64

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
               E  SL      +G  P+  ++S L  M+ E+  +     V  EM+ +    +L   
Sbjct: 65  KLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTC 124

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
           N +++  G+ G    A  LF  M + G+ P+  +   L+++YG A    +A+ L+  M+ 
Sbjct: 125 NIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR 184

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
                + + YN+++ +       E+A  L ++M+ S   +P++ +Y+ +++I+G  G +D
Sbjct: 185 KNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQ-SRGIEPNSITYSTIISIWGKVGKLD 243

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
            A  LF+++   GV I+ +    +I    +A
Sbjct: 244 RAAMLFQKLRSSGVEIDQILFQTMIVAYERA 274



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 75/180 (41%), Gaps = 31/180 (17%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY- 267
           L  EM S  IE ++ITYSTII+   +    D A   F+++  +G+  D++ +  ++  Y 
Sbjct: 213 LIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYE 272

Query: 268 ------------------------------AKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
                                         A +G++EE   ++ + + +G   D   F  
Sbjct: 273 RAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEAKDITVFER 332

Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
           +  +  +   Y  +  V  +M+ LG  P+  V   +L A GK  +   A  ++ EM E G
Sbjct: 333 MIHLLSKYKKYSNVVEVFDKMRGLGYFPDSNVIAVVLNAYGKLQEFDKANDVYMEMQEVG 392



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/219 (22%), Positives = 85/219 (38%), Gaps = 36/219 (16%)

Query: 315 LQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK 374
           LQ+M+   V  +LV+Y+ L+E   K      A S+F  +  SG TP              
Sbjct: 4   LQKMEQDQVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTP-------------- 49

Query: 375 ARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNY 434
                                D + YN ++N+     L  EA  L  +MK +    P+  
Sbjct: 50  ---------------------DLVAYNAMINVFGKAKLFREARSLISEMKTAG-VMPNTT 87

Query: 435 SYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVS 494
           SY+ +L +Y        A+ +F EM E+   +++  C  +I   G+     +  ++F   
Sbjct: 88  SYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM 147

Query: 495 IDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN 533
              G++P+      LL V    E   +   +   +Q+ N
Sbjct: 148 RKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKN 186


>gi|242050640|ref|XP_002463064.1| hypothetical protein SORBIDRAFT_02g037020 [Sorghum bicolor]
 gi|241926441|gb|EER99585.1| hypothetical protein SORBIDRAFT_02g037020 [Sorghum bicolor]
          Length = 558

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/380 (22%), Positives = 161/380 (42%), Gaps = 41/380 (10%)

Query: 158 LLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNE 217
           + I  SLK    +   F W+K Q  +      Y + ++      Q      L  EM    
Sbjct: 127 ITISGSLKH---AVHVFRWMKIQENYCARNDIYGMMIRLHARHNQVDQARGLFFEMQEWR 183

Query: 218 IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL 277
            + D  TY+++I    R   +  AI   + M +  + P   TY+ +++    +G  ++ L
Sbjct: 184 CKPDTDTYNSLIHAHARAGQWRWAINIMDDMQRAAIPPSRTTYNNVINACGAAGNWKKAL 243

Query: 278 SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQ------------- 324
            L ++   +G  PD I  +++   F     Y       + MKS  V              
Sbjct: 244 ELCKKMTENGVGPDLITHNIVLSAFKNGAQYSKAIAYFEIMKSSKVAPDTCTMNIVIHCL 303

Query: 325 ------------------------PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTP 360
                                   P++V Y +++ +    G+    +++FD MV  G+ P
Sbjct: 304 VKVALYGEAIELFNSMRERRTICPPDVVTYTSIMYSYSVCGQAENCKAVFDMMVAEGVRP 363

Query: 361 DEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLF 420
           +  +  AL+  Y       +ALE ++ +++N +  D + Y +LLN      L E+A  +F
Sbjct: 364 NIVSYNALLGAYASHGMHTEALETFKLLKQNGFKPDIVSYTSLLNAYGRSALPEKAREVF 423

Query: 421 EDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK 480
            +M+  + CKP+  SY A+++ YGS G +  AI L  EM + G+  +V+  + L+   G+
Sbjct: 424 NEMR-KNACKPNKVSYNALIDAYGSAGMLKEAISLLHEMEQDGIQPDVISISTLLTACGR 482

Query: 481 ARRIDDLVRVFGVSIDRGVK 500
            R+   +  +   +  RG++
Sbjct: 483 CRQPTKIGIILAAAKSRGIQ 502



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/330 (23%), Positives = 141/330 (42%), Gaps = 39/330 (11%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           P + T  N +    +   W+K+      +    + P + I +N+ + + + G Q+     
Sbjct: 221 PSRTTYNNVINACGAAGNWKKALELCKKMTENGVGP-DLITHNIVLSAFKNGAQYSKAIA 279

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF----------------------- 245
               M S+++  D  T + +I C  +  L+ EAIE F                       
Sbjct: 280 YFEIMKSSKVAPDTCTMNIVIHCLVKVALYGEAIELFNSMRERRTICPPDVVTYTSIMYS 339

Query: 246 --------------ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291
                         + M   G+ P+ V+Y+A+L  YA  G   E L  ++    +G+KPD
Sbjct: 340 YSVCGQAENCKAVFDMMVAEGVRPNIVSYNALLGAYASHGMHTEALETFKLLKQNGFKPD 399

Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
            ++++ L   +G S   +  R V  EM+    +PN V YN L++A G AG    A SL  
Sbjct: 400 IVSYTSLLNAYGRSALPEKAREVFNEMRKNACKPNKVSYNALIDAYGSAGMLKEAISLLH 459

Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411
           EM + G+ PD  +++ L+   G+ R       +    +     ++ + YN+ +     +G
Sbjct: 460 EMEQDGIQPDVISISTLLTACGRCRQPTKIGIILAAAKSRGIQLNTVAYNSGIGSYLSLG 519

Query: 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
             ++A  L+  M+  +  KPD  +Y  +++
Sbjct: 520 DYKKALELYTSMRTGN-VKPDAVTYNILIS 548



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 68/283 (24%), Positives = 132/283 (46%), Gaps = 3/283 (1%)

Query: 222 NITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYE 281
           N  Y  +I    R N  D+A   F  M +    PD  TY++++  +A++G+    +++ +
Sbjct: 153 NDIYGMMIRLHARHNQVDQARGLFFEMQEWRCKPDTDTYNSLIHAHARAGQWRWAINIMD 212

Query: 282 RGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG 341
               +   P    ++ +    G +G++     + ++M   GV P+L+ +N +L A     
Sbjct: 213 DMQRAAIPPSRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLITHNIVLSAFKNGA 272

Query: 342 KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENK--WPMDFIL 399
           +   A + F+ M  S + PD  T+  +I    K     +A+EL+  MRE +   P D + 
Sbjct: 273 QYSKAIAYFEIMKSSKVAPDTCTMNIVIHCLVKVALYGEAIELFNSMRERRTICPPDVVT 332

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           Y +++   +  G  E  + +F DM +++  +P+  SY A+L  Y S G    A+E F+ +
Sbjct: 333 YTSIMYSYSVCGQAENCKAVF-DMMVAEGVRPNIVSYNALLGAYASHGMHTEALETFKLL 391

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            + G   +++  T L+   G++   +    VF        KP+
Sbjct: 392 KQNGFKPDIVSYTSLLNAYGRSALPEKAREVFNEMRKNACKPN 434



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 72/174 (41%), Gaps = 42/174 (24%)

Query: 203 FQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSA 262
           F+L++Q       N  + D ++Y++++    R  L ++A E F  M K    P++V+Y+A
Sbjct: 388 FKLLKQ-------NGFKPDIVSYTSLLNAYGRSALPEKAREVFNEMRKNACKPNKVSYNA 440

Query: 263 ILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES----------------- 305
           ++D Y  +G ++E +SL       G +PD I+ S L    G                   
Sbjct: 441 LIDAYGSAGMLKEAISLLHEMEQDGIQPDVISISTLLTACGRCRQPTKIGIILAAAKSRG 500

Query: 306 ------------------GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG 341
                             GDY     +   M++  V+P+ V YN L+    K G
Sbjct: 501 IQLNTVAYNSGIGSYLSLGDYKKALELYTSMRTGNVKPDAVTYNILISGSCKLG 554


>gi|125564557|gb|EAZ09937.1| hypothetical protein OsI_32236 [Oryza sativa Indica Group]
          Length = 544

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 160/336 (47%), Gaps = 10/336 (2%)

Query: 172 FFFNWIKSQNLFPMETI--FYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTII 229
           FF + + S    P +++   Y   +  L     F L   L +EM    + +       +I
Sbjct: 131 FFHHVLPS---LPPDSLPALYAAMIDLLAKHHHFPLARHLLDEMRERSVPISAQLILALI 187

Query: 230 TCAKRCNLFDEAIEWFERMYKTGL-MPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
               R  +  EA + F RM + G   PD  T +++L   +K     E  ++++    S +
Sbjct: 188 RRYVRAEMPSEASDLFRRMEEYGAGAPDPATLASLLGALSKKRLASEAQAMFD-SYKSVF 246

Query: 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348
            PD + ++ L   +  SG  D    V  EM+  GV PN+  Y  +++AM +AG+   A+ 
Sbjct: 247 TPDVVLYTTLVHAWCRSGRLDEAERVFAEMQQAGVTPNVYTYTAVIDAMYRAGQVPRAQE 306

Query: 349 LFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCA 408
           L  +M++SG  P+  T  A+++ + KA  ++  L++  +MR+     D I YN L+    
Sbjct: 307 LLCQMIDSGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMRQLGCEPDIITYNFLMETHC 366

Query: 409 DIGL--VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
             G   ++ A ++   M ++  C PD +++  ML +    GNV+ A +L+E M EL    
Sbjct: 367 GKGQSNLDAAMKMLTRM-IAKGCIPDCHTFNPMLKLVLVLGNVNAARKLYERMQELQCKP 425

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           NV+    L++     + +D ++R+      +GV+P+
Sbjct: 426 NVVTYNLLMRLFNLEKSMDMVLRIKRDMDAQGVEPN 461



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 100/209 (47%), Gaps = 5/209 (2%)

Query: 184 PMETIFYNVTMKS-LRFGRQFQLIEQLANEMVSNEIELDNITYSTII--TCAKRCNLFDE 240
           P  T  +N  M++ ++ GR  Q++ Q+ N+M     E D ITY+ ++   C K  +  D 
Sbjct: 317 PPNTATFNAIMRAHVKAGRSEQVL-QVHNQMRQLGCEPDIITYNFLMETHCGKGQSNLDA 375

Query: 241 AIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGK 300
           A++   RM   G +PD  T++ +L +    G V     LYER      KP+ + +++L +
Sbjct: 376 AMKMLTRMIAKGCIPDCHTFNPMLKLVLVLGNVNAARKLYERMQELQCKPNVVTYNLLMR 435

Query: 301 MFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMV-ESGLT 359
           +F      D +  + ++M + GV+PN+  Y  L+EA    G    A     EMV E  L 
Sbjct: 436 LFNLEKSMDMVLRIKRDMDAQGVEPNVNTYAALIEAFCGRGNWKRAHMTLREMVEEKALK 495

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERM 388
           P +     ++ +  KA   +   EL E M
Sbjct: 496 PTKPVYDMVLALLRKAGQLRRHEELVEMM 524



 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 81/357 (22%), Positives = 148/357 (41%), Gaps = 49/357 (13%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKS-LRFGRQFQLIE 207
           P   T  + L  L+  +   ++   F+  KS  +F  + + Y   + +  R GR     E
Sbjct: 214 PDPATLASLLGALSKKRLASEAQAMFDSYKS--VFTPDVVLYTTLVHAWCRSGR-LDEAE 270

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           ++  EM    +  +  TY+ +I    R      A E   +M  +G  P+  T++AI+  +
Sbjct: 271 RVFAEMQQAGVTPNVYTYTAVIDAMYRAGQVPRAQELLCQMIDSGCPPNTATFNAIMRAH 330

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            K+G+ E+VL ++ +                                   M+ LG +P++
Sbjct: 331 VKAGRSEQVLQVHNQ-----------------------------------MRQLGCEPDI 355

Query: 328 VVYNTLLEAMGKAGKPGL--ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
           + YN L+E     G+  L  A  +   M+  G  PD  T   ++K+         A +L+
Sbjct: 356 ITYNFLMETHCGKGQSNLDAAMKMLTRMIAKGCIPDCHTFNPMLKLVLVLGNVNAARKLY 415

Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445
           ERM+E +   + + YN L+ +      ++   R+  DM  +   +P+  +Y A++  +  
Sbjct: 416 ERMQELQCKPNVVTYNLLMRLFNLEKSMDMVLRIKRDMD-AQGVEPNVNTYAALIEAFCG 474

Query: 446 GGNVDNAIELFEEMSE---LGVAINVMGCT-CLIQCLGKARRIDDLVRVFGVSIDRG 498
            GN   A     EM E   L     V      L++  G+ RR ++LV +    +DRG
Sbjct: 475 RGNWKRAHMTLREMVEEKALKPTKPVYDMVLALLRKAGQLRRHEELVEMM---VDRG 528



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 99/221 (44%), Gaps = 5/221 (2%)

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
           +Y  +++ + K     LAR L DEM E  +    + + ALI+ Y +A    +A +L+ RM
Sbjct: 147 LYAAMIDLLAKHHHFPLARHLLDEMRERSVPISAQLILALIRRYVRAEMPSEASDLFRRM 206

Query: 389 RE-NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
            E      D     +LL   +   L  EA+ +F+  K      PD   YT +++ +   G
Sbjct: 207 EEYGAGAPDPATLASLLGALSKKRLASEAQAMFDSYK--SVFTPDVVLYTTLVHAWCRSG 264

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCG 507
            +D A  +F EM + GV  NV   T +I  + +A ++     +    ID G  P+     
Sbjct: 265 RLDEAERVFAEMQQAGVTPNVYTYTAVIDAMYRAGQVPRAQELLCQMIDSGCPPNTATFN 324

Query: 508 CLLSVVSLCETSEDVGKVITCLQQ--ANPKLVAFLNLIEDN 546
            ++        SE V +V   ++Q    P ++ +  L+E +
Sbjct: 325 AIMRAHVKAGRSEQVLQVHNQMRQLGCEPDIITYNFLMETH 365


>gi|212274769|ref|NP_001130292.1| uncharacterized protein LOC100191386 [Zea mays]
 gi|194688764|gb|ACF78466.1| unknown [Zea mays]
          Length = 510

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 98/393 (24%), Positives = 173/393 (44%), Gaps = 17/393 (4%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D  +YST++    R    D A+ +   M    + PD + +S ++ +  + G   + L+L+
Sbjct: 9   DAFSYSTLLAALTRAGHLDHALTFLPLMEDDAVAPDLILFSNLIHLALRGGDAPKALALF 68

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDY-DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
            R  A+G +PD  A++     + +S    D  R +L +M + GV P+   Y+ +L A+ +
Sbjct: 69  SRLRAAGIRPDLKAYNAAVAAYCKSDLLRDAKRMLLHDMPADGVAPDAETYSPILAALAR 128

Query: 340 AGKPGLARSLFDEM-VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFI 398
            G+   A SLF  M   + + PD      ++  YG+   A++A  L+  MR    P   +
Sbjct: 129 RGRHLAAVSLFSHMRAVARVKPDISVFNIILNAYGQLDLAREADRLFWSMRRAGVPPSVV 188

Query: 399 LYNTLLNMCADIGLVEEAERLFEDMK--------LSDYCKPDNYSYTAMLNIYGSGGNVD 450
            YNT+L +  D GL  EA  LF+ M+             KP+  +Y  M+ IYG     +
Sbjct: 189 TYNTMLRVYGDAGLFGEAVHLFDLMRSTSDGNGGAGSSVKPNVVTYNTMITIYGKSLEDE 248

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
            A  L +EM  +GV  + +  + ++    KA ++D   R+F    + G + D  L   ++
Sbjct: 249 KAGRLVQEMQAIGVQPDAITYSTILSIWVKAGKLDRAARLFEKLREAGTEIDPVLYQTMV 308

Query: 511 SVVSLCETSEDVGKVITCLQ--QANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEV-- 566
                   +    +++  L+  +  PK  A   L   ++   E     FR  +   E+  
Sbjct: 309 VAYERAGLASQAKRLLRDLKDPEGIPKETAIKILA--SAGRLEEAAWLFRRAVNTGEIKD 366

Query: 567 -DARRPFCNCLIDICRNRNLNERAHELLYLGTL 598
               R   +      R+RN+ E   E+  LG L
Sbjct: 367 SSVHRAMMDLYAKNRRHRNVIEVFDEMRKLGQL 399



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 154/326 (47%), Gaps = 14/326 (4%)

Query: 198 RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDE 257
           R GR    +   ++      ++ D   ++ I+    + +L  EA   F  M + G+ P  
Sbjct: 128 RRGRHLAAVSLFSHMRAVARVKPDISVFNIILNAYGQLDLAREADRLFWSMRRAGVPPSV 187

Query: 258 VTYSAILDVYAKSGKVEEVLSLYE---------RGVASGWKPDPIAFSVLGKMFGESGDY 308
           VTY+ +L VY  +G   E + L++          G  S  KP+ + ++ +  ++G+S + 
Sbjct: 188 VTYNTMLRVYGDAGLFGEAVHLFDLMRSTSDGNGGAGSSVKPNVVTYNTMITIYGKSLED 247

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
           +    ++QEM+++GVQP+ + Y+T+L    KAGK   A  LF+++ E+G   D      +
Sbjct: 248 EKAGRLVQEMQAIGVQPDAITYSTILSIWVKAGKLDRAARLFEKLREAGTEIDPVLYQTM 307

Query: 369 IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428
           +  Y +A  A  A  L   +R+ K P + I   T + + A  G +EEA  LF     +  
Sbjct: 308 VVAYERAGLASQAKRL---LRDLKDP-EGIPKETAIKILASAGRLEEAAWLFRRAVNTGE 363

Query: 429 CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLV 488
            K D+  + AM+++Y       N IE+F+EM +LG   +       +   GK +  D   
Sbjct: 364 IK-DSSVHRAMMDLYAKNRRHRNVIEVFDEMRKLGQLPDSEIIATAMNAYGKLKEFDKAA 422

Query: 489 RVFGVSIDRGVKPDDRLCGCLLSVVS 514
            ++    + G    DR+   ++S++ 
Sbjct: 423 ALYQAMREAGCVFSDRVHFQMISLLG 448



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 77/335 (22%), Positives = 144/335 (42%), Gaps = 15/335 (4%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTG-LMPDEVTYSAILDVY 267
           L ++M ++ +  D  TYS I+    R      A+  F  M     + PD   ++ IL+ Y
Sbjct: 103 LLHDMPADGVAPDAETYSPILAALARRGRHLAAVSLFSHMRAVARVKPDISVFNIILNAY 162

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG----- 322
            +     E   L+     +G  P  + ++ + +++G++G +    ++   M+S       
Sbjct: 163 GQLDLAREADRLFWSMRRAGVPPSVVTYNTMLRVYGDAGLFGEAVHLFDLMRSTSDGNGG 222

Query: 323 ----VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWA 378
               V+PN+V YNT++   GK+ +   A  L  EM   G+ PD  T + ++ I+ KA   
Sbjct: 223 AGSSVKPNVVTYNTMITIYGKSLEDEKAGRLVQEMQAIGVQPDAITYSTILSIWVKAGKL 282

Query: 379 KDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTA 438
             A  L+E++RE    +D +LY T++      GL  +A+RL  D+K      P+      
Sbjct: 283 DRAARLFEKLREAGTEIDPVLYQTMVVAYERAGLASQAKRLLRDLK-----DPEGIPKET 337

Query: 439 MLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRG 498
            + I  S G ++ A  LF      G   +      ++    K RR  +++ VF      G
Sbjct: 338 AIKILASAGRLEEAAWLFRRAVNTGEIKDSSVHRAMMDLYAKNRRHRNVIEVFDEMRKLG 397

Query: 499 VKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN 533
             PD  +    ++     +  +    +   +++A 
Sbjct: 398 QLPDSEIIATAMNAYGKLKEFDKAAALYQAMREAG 432



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 111/266 (41%), Gaps = 22/266 (8%)

Query: 279 LYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMG 338
           + ERGV     PD  ++S L      +G  D     L  M+   V P+L++++ L+    
Sbjct: 1   MRERGVT----PDAFSYSTLLAALTRAGHLDHALTFLPLMEDDAVAPDLILFSNLIHLAL 56

Query: 339 KAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFI 398
           + G    A +LF  +  +G+ PD K   A +  Y K+   +DA    +RM  +  P D +
Sbjct: 57  RGGDAPKALALFSRLRAAGIRPDLKAYNAAVAAYCKSDLLRDA----KRMLLHDMPADGV 112

Query: 399 L-----YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAI 453
                 Y+ +L   A  G    A  LF  M+     KPD   +  +LN YG       A 
Sbjct: 113 APDAETYSPILAALARRGRHLAAVSLFSHMRAVARVKPDISVFNIILNAYGQLDLAREAD 172

Query: 454 ELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGV--SIDRG-------VKPDDR 504
            LF  M   GV  +V+    +++  G A    + V +F +  S   G       VKP+  
Sbjct: 173 RLFWSMRRAGVPPSVVTYNTMLRVYGDAGLFGEAVHLFDLMRSTSDGNGGAGSSVKPNVV 232

Query: 505 LCGCLLSVVSLCETSEDVGKVITCLQ 530
               ++++       E  G+++  +Q
Sbjct: 233 TYNTMITIYGKSLEDEKAGRLVQEMQ 258


>gi|302829725|ref|XP_002946429.1| hypothetical protein VOLCADRAFT_103021 [Volvox carteri f.
           nagariensis]
 gi|300268175|gb|EFJ52356.1| hypothetical protein VOLCADRAFT_103021 [Volvox carteri f.
           nagariensis]
          Length = 961

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/340 (24%), Positives = 164/340 (48%), Gaps = 7/340 (2%)

Query: 180 QNLFPMETIFYNVTMKSLR----FGRQFQLIEQLANEMVSNEIE--LDNITYSTIITCAK 233
           Q L+ +++      +K L       R  ++ + L N   S+E+    D  TY+T+I+   
Sbjct: 228 QGLYYLDSSAMAALLKELAKQGYLKRAVEIFDWLRNLEPSHELSSLCDLYTYTTMISQCG 287

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
                  A+E    M   G+  +  TYSA+++V  K+ +++    +Y++ +  G  P+ +
Sbjct: 288 SHQQLRRALELVAEMRSRGIDCNVHTYSALMNVCIKANELDLAQDVYKQMLEEGCSPNLV 347

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
            +++L  ++ +   ++    VL  ++   +Q  +  YNT++ A  K+G+P  A  ++++M
Sbjct: 348 TYNILIDVYVKRCQWEEAVKVLDTLEKQAIQAEVRTYNTVISACNKSGQPEQALKVYEKM 407

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
           + +G+ P   T TALI  YGK    + ALE++  M       + I Y++L++ C   G  
Sbjct: 408 LAAGVKPSATTYTALISAYGKKGQVEKALEIFRDMIRRGCERNVITYSSLISACEKAGRW 467

Query: 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTC 473
           E A  LF  M   + CKP+  ++ +++     GG+ + A ELFE+M   G   + +    
Sbjct: 468 EMALELFSKMH-KENCKPNVVTFNSLIAACSHGGHWEKASELFEQMQTQGCKPDSITYCG 526

Query: 474 LIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVV 513
           LI    +  +    ++ F     +G  PD  +   L+ V+
Sbjct: 527 LITAYERGGQWRRALKAFEQMQTQGCHPDAAVFNSLMEVL 566



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 142/324 (43%), Gaps = 45/324 (13%)

Query: 166 FWQKSYFFFNWIKSQNLFPMETI-----FYNVTMKSLRFGRQFQLIE--QLANEMVSNEI 218
           + +++   F+W++  NL P   +      Y  T    + G   QL    +L  EM S  I
Sbjct: 250 YLKRAVEIFDWLR--NLEPSHELSSLCDLYTYTTMISQCGSHQQLRRALELVAEMRSRGI 307

Query: 219 ELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAK--------- 269
           + +  TYS ++    + N  D A + +++M + G  P+ VTY+ ++DVY K         
Sbjct: 308 DCNVHTYSALMNVCIKANELDLAQDVYKQMLEEGCSPNLVTYNILIDVYVKRCQWEEAVK 367

Query: 270 --------------------------SGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
                                     SG+ E+ L +YE+ +A+G KP    ++ L   +G
Sbjct: 368 VLDTLEKQAIQAEVRTYNTVISACNKSGQPEQALKVYEKMLAAGVKPSATTYTALISAYG 427

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
           + G  +    + ++M   G + N++ Y++L+ A  KAG+  +A  LF +M +    P+  
Sbjct: 428 KKGQVEKALEIFRDMIRRGCERNVITYSSLISACEKAGRWEMALELFSKMHKENCKPNVV 487

Query: 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
           T  +LI         + A EL+E+M+      D I Y  L+      G    A + FE M
Sbjct: 488 TFNSLIAACSHGGHWEKASELFEQMQTQGCKPDSITYCGLITAYERGGQWRRALKAFEQM 547

Query: 424 KLSDYCKPDNYSYTAMLNIYGSGG 447
           + +  C PD   + +++ +    G
Sbjct: 548 Q-TQGCHPDAAVFNSLMEVLWQSG 570



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 114/226 (50%), Gaps = 4/226 (1%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           I  +V +K  ++    ++++ L  + +  E+     TY+T+I+   +    ++A++ +E+
Sbjct: 351 ILIDVYVKRCQWEEAVKVLDTLEKQAIQAEVR----TYNTVISACNKSGQPEQALKVYEK 406

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M   G+ P   TY+A++  Y K G+VE+ L ++   +  G + + I +S L     ++G 
Sbjct: 407 MLAAGVKPSATTYTALISAYGKKGQVEKALEIFRDMIRRGCERNVITYSSLISACEKAGR 466

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
           ++    +  +M     +PN+V +N+L+ A    G    A  LF++M   G  PD  T   
Sbjct: 467 WEMALELFSKMHKENCKPNVVTFNSLIAACSHGGHWEKASELFEQMQTQGCKPDSITYCG 526

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
           LI  Y +    + AL+ +E+M+      D  ++N+L+ +    G++
Sbjct: 527 LITAYERGGQWRRALKAFEQMQTQGCHPDAAVFNSLMEVLWQSGVL 572



 Score = 44.7 bits (104), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 46/212 (21%), Positives = 92/212 (43%), Gaps = 11/212 (5%)

Query: 361 DEKTLTALIKIYGKARWAKDALELWERMR------ENKWPMDFILYNTLLNMCADIGLVE 414
           D   + AL+K   K  + K A+E+++ +R      E     D   Y T+++ C     + 
Sbjct: 234 DSSAMAALLKELAKQGYLKRAVEIFDWLRNLEPSHELSSLCDLYTYTTMISQCGSHQQLR 293

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
            A  L  +M+ S     + ++Y+A++N+      +D A +++++M E G + N++    L
Sbjct: 294 RALELVAEMR-SRGIDCNVHTYSALMNVCIKANELDLAQDVYKQMLEEGCSPNLVTYNIL 352

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN- 533
           I    K  + ++ V+V      + ++ + R    ++S  +     E   KV   +  A  
Sbjct: 353 IDVYVKRCQWEEAVKVLDTLEKQAIQAEVRTYNTVISACNKSGQPEQALKVYEKMLAAGV 412

Query: 534 -PKLVAFLNLIE--DNSTGFENIKEEFRNVIK 562
            P    +  LI         E   E FR++I+
Sbjct: 413 KPSATTYTALISAYGKKGQVEKALEIFRDMIR 444


>gi|297816792|ref|XP_002876279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322117|gb|EFH52538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 101/408 (24%), Positives = 190/408 (46%), Gaps = 45/408 (11%)

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           P +  + +V + S++ G     I +  +EMVS+ I ++ +  +++IT   + N    A++
Sbjct: 301 PSQETYTSVILASVKQGNMEDAI-RWKDEMVSDGISMNVVAATSLITGHCKNNDLGSALD 359

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG---- 299
            F +M   G  P+ VT+S +++ ++K+G++E+ L  Y++  + G  P       +     
Sbjct: 360 LFYKMENEGPSPNSVTFSVLIERFSKNGEMEKALEFYKKMESLGLTPSVFHVHTIIQGWL 419

Query: 300 ---------KMFGES---------------------GDYDGIRYVLQEMKSLGVQPNLVV 329
                    K+F ES                     G  D    +L++M+S G+ PN+V 
Sbjct: 420 KGQKHEEALKLFDESFETGLANVFICNTILSWLCKQGKIDKATELLRKMESRGIGPNVVS 479

Query: 330 YNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMR 389
           YN ++ A  +     LAR++F  M+E GL P+  T + LI    K    ++ LE+  +M 
Sbjct: 480 YNNVMLAHCRKKNMDLARTVFSNMLEKGLKPNNYTYSILIDGCFKNHDEQNVLEVVNQMT 539

Query: 390 ENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNV 449
            +   ++ ++Y T++N    +G   +A  L  +M           SY ++++ +   G +
Sbjct: 540 SSNIEVNGVVYQTIINGLCKVGQTSKARELLANMIEEKRFCVSCMSYNSIIDGFIKEGEM 599

Query: 450 DNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCL 509
           D A+  +EEM   G++ NV+  T L+  L K  R+D  + +     ++GVK D    G L
Sbjct: 600 DYAVAAYEEMCANGISPNVITYTSLMDGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGAL 659

Query: 510 LSVVSLCETS--EDVGKVITCL--QQANPKLVAFLNLIEDNSTGFENI 553
           +     C+ S  E    + + L  +  NP    + +LI    +GF N+
Sbjct: 660 IH--GFCKKSNMESASALFSELLEEGLNPSQPVYNSLI----SGFRNL 701



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 146/309 (47%), Gaps = 2/309 (0%)

Query: 204 QLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTG-LMPDEVTYSA 262
           Q + ++ N+M S+ IE++ + Y TII    +     +A E    M +        ++Y++
Sbjct: 529 QNVLEVVNQMTSSNIEVNGVVYQTIINGLCKVGQTSKARELLANMIEEKRFCVSCMSYNS 588

Query: 263 ILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG 322
           I+D + K G+++  ++ YE   A+G  P+ I ++ L     ++   D    +  EMK+ G
Sbjct: 589 IIDGFIKEGEMDYAVAAYEEMCANGISPNVITYTSLMDGLCKNNRMDQALEMRDEMKNKG 648

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382
           V+ ++  Y  L+    K      A +LF E++E GL P +    +LI  +        AL
Sbjct: 649 VKLDIPAYGALIHGFCKKSNMESASALFSELLEEGLNPSQPVYNSLISGFRNLGNMVAAL 708

Query: 383 ELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNI 442
           +L+++M ++    D   Y TL++     G +  A  L+ +M+      PD   YT ++N 
Sbjct: 709 DLYKKMLKDGLRCDLGTYTTLIDGLLKEGNLILASDLYTEMQAVGLV-PDEIMYTVIVNG 767

Query: 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
               G     +++FEEM +  V  NV+    +I    +   +D+  R+    +D+G+ PD
Sbjct: 768 LSKKGQFVKVVKMFEEMKKNNVTPNVLIYNAVIAGHYREGNLDEAFRLHDEMLDKGILPD 827

Query: 503 DRLCGCLLS 511
                 L+S
Sbjct: 828 GATFDILVS 836



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 97/216 (44%)

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G++ +  AF+ L   + +    D    ++ +M  LGV P +   N  L A+ +      A
Sbjct: 157 GFEVNSRAFNYLLNAYSKDRQTDYAVDIVNQMLELGVIPFVPYVNRTLSALVQRNSITEA 216

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
           + L+  MV  G+  D  T   L++   +     +ALE++ R  E     D +LY+  +  
Sbjct: 217 KELYSRMVAIGVDGDNGTTQLLMRASLREEKPAEALEVFSRAIERGAEPDSLLYSLAVQA 276

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
           C     +  A  L  +MK    C P   +YT+++      GN+++AI   +EM   G+++
Sbjct: 277 CCKTLNLAMANSLLREMKEKKLCVPSQETYTSVILASVKQGNMEDAIRWKDEMVSDGISM 336

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           NV+  T LI    K   +   + +F    + G  P+
Sbjct: 337 NVVAATSLITGHCKNNDLGSALDLFYKMENEGPSPN 372



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 79/347 (22%), Positives = 148/347 (42%), Gaps = 5/347 (1%)

Query: 189 FYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERM 248
           + N T+ +L         ++L + MV+  ++ DN T   ++  + R     EA+E F R 
Sbjct: 199 YVNRTLSALVQRNSITEAKELYSRMVAIGVDGDNGTTQLLMRASLREEKPAEALEVFSRA 258

Query: 249 YKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY-ERGVASGWKPDPIAF-SVLGKMFGESG 306
            + G  PD + YS  +    K+  +    SL  E        P    + SV+     +  
Sbjct: 259 IERGAEPDSLLYSLAVQACCKTLNLAMANSLLREMKEKKLCVPSQETYTSVILASVKQGN 318

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
             D IR+   EM S G+  N+V   +L+    K    G A  LF +M   G +P+  T +
Sbjct: 319 MEDAIRWK-DEMVSDGISMNVVAATSLITGHCKNNDLGSALDLFYKMENEGPSPNSVTFS 377

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
            LI+ + K    + ALE +++M            +T++         EEA +LF++   +
Sbjct: 378 VLIERFSKNGEMEKALEFYKKMESLGLTPSVFHVHTIIQGWLKGQKHEEALKLFDESFET 437

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
                + +    +L+     G +D A EL  +M   G+  NV+    ++    + + +D 
Sbjct: 438 GLA--NVFICNTILSWLCKQGKIDKATELLRKMESRGIGPNVVSYNNVMLAHCRKKNMDL 495

Query: 487 LVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN 533
              VF   +++G+KP++     L+         ++V +V+  +  +N
Sbjct: 496 ARTVFSNMLEKGLKPNNYTYSILIDGCFKNHDEQNVLEVVNQMTSSN 542



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/255 (21%), Positives = 104/255 (40%), Gaps = 36/255 (14%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
            I Y   M  L    +     ++ +EM +  ++LD   Y  +I    + +  + A   F 
Sbjct: 618 VITYTSLMDGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIHGFCKKSNMESASALFS 677

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
            + + GL P +  Y++++  +   G +   L LY++ +  G + D               
Sbjct: 678 ELLEEGLNPSQPVYNSLISGFRNLGNMVAALDLYKKMLKDGLRCD--------------- 722

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
                               L  Y TL++ + K G   LA  L+ EM   GL PDE   T
Sbjct: 723 --------------------LGTYTTLIDGLLKEGNLILASDLYTEMQAVGLVPDEIMYT 762

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
            ++    K       ++++E M++N    + ++YN ++      G ++EA RL ++M L 
Sbjct: 763 VIVNGLSKKGQFVKVVKMFEEMKKNNVTPNVLIYNAVIAGHYREGNLDEAFRLHDEM-LD 821

Query: 427 DYCKPDNYSYTAMLN 441
               PD  ++  +++
Sbjct: 822 KGILPDGATFDILVS 836



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 83/198 (41%), Gaps = 38/198 (19%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIIT-C 231
            F+ +  + L P + + YN  +   R          L  +M+ + +  D  TY+T+I   
Sbjct: 675 LFSELLEEGLNPSQPV-YNSLISGFRNLGNMVAALDLYKKMLKDGLRCDLGTYTTLIDGL 733

Query: 232 AKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291
            K  NL   A + +  M   GL+PDE+ Y+ I++  +K G+  +V+ ++E          
Sbjct: 734 LKEGNLI-LASDLYTEMQAVGLVPDEIMYTVIVNGLSKKGQFVKVVKMFE---------- 782

Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
                                    EMK   V PN+++YN ++    + G    A  L D
Sbjct: 783 -------------------------EMKKNNVTPNVLIYNAVIAGHYREGNLDEAFRLHD 817

Query: 352 EMVESGLTPDEKTLTALI 369
           EM++ G+ PD  T   L+
Sbjct: 818 EMLDKGILPDGATFDILV 835


>gi|22531122|gb|AAM97065.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
 gi|62320656|dbj|BAD95323.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
          Length = 596

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 96/355 (27%), Positives = 168/355 (47%), Gaps = 9/355 (2%)

Query: 192 VTMKSLR----FGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           VT+ SL      G++      L ++MV      D IT++T+I      N   EA+   +R
Sbjct: 118 VTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDR 177

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M + G  P+ VTY  +++   K G  +  L+L  +  A+  + D + F+ +     +   
Sbjct: 178 MVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRH 237

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
            D    + +EM++ G++PN+V Y++L+  +   G+   A  L  +M+E  + P+  T  A
Sbjct: 238 VDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNA 297

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           LI  + K     +A +L++ M +     D   YN+L+N       +++A+++FE M   D
Sbjct: 298 LIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKD 357

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
            C PD  +Y  ++  +     V++  ELF EMS  G+  + +  T LIQ L      D+ 
Sbjct: 358 -CFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNA 416

Query: 488 VRVFGVSIDRGVKPDDRLCGCLLSVVSLCETS--EDVGKVITCLQQANPKLVAFL 540
            +VF   +  GV PD      LL    LC     E   +V   +Q++  KL  ++
Sbjct: 417 QKVFKQMVSDGVPPDIMTYSILLD--GLCNNGKLEKALEVFDYMQKSEIKLDIYI 469



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 152/315 (48%), Gaps = 1/315 (0%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           + Y V +  L       L   L N+M + +IE D + ++TII    +    D+A+  F+ 
Sbjct: 188 VTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKE 247

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M   G+ P+ VTYS+++      G+  +   L    +     P+ + F+ L   F + G 
Sbjct: 248 METKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGK 307

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
           +     +  +M    + P++  YN+L+       +   A+ +F+ MV     PD  T   
Sbjct: 308 FVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNT 367

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           LIK + K++  +D  EL+  M       D + Y TL+      G  + A+++F+ M +SD
Sbjct: 368 LIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQM-VSD 426

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
              PD  +Y+ +L+   + G ++ A+E+F+ M +  + +++   T +I+ + KA ++DD 
Sbjct: 427 GVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDG 486

Query: 488 VRVFGVSIDRGVKPD 502
             +F     +GVKP+
Sbjct: 487 WDLFCSLSLKGVKPN 501



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/297 (27%), Positives = 141/297 (47%), Gaps = 1/297 (0%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + +N  + SL   R       L  EM +  I  + +TYS++I+C      + +A +  
Sbjct: 221 DVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLL 280

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
             M +  + P+ VT++A++D + K GK  E   LY+  +     PD   ++ L   F   
Sbjct: 281 SDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMH 340

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
              D  + + + M S    P++V YNTL++   K+ +      LF EM   GL  D  T 
Sbjct: 341 DRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTY 400

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
           T LI+         +A +++++M  +  P D + Y+ LL+   + G +E+A  +F+ M+ 
Sbjct: 401 TTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQK 460

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKAR 482
           S+  K D Y YT M+      G VD+  +LF  +S  GV  NV+    +I  L   R
Sbjct: 461 SEI-KLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKR 516



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/314 (24%), Positives = 155/314 (49%), Gaps = 3/314 (0%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN+ +       Q  L   L  +M+    E   +T S+++          +A+   ++M 
Sbjct: 85  YNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMV 144

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
           + G  PD +T++ ++       K  E ++L +R V  G +P+ + + V+     + GD D
Sbjct: 145 EMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTD 204

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               +L +M++  ++ ++V++NT+++++ K      A +LF EM   G+ P+  T ++LI
Sbjct: 205 LALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLI 264

Query: 370 K-IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428
             +    RW+ DA +L   M E K   + + +N L++     G   EAE+L++DM +   
Sbjct: 265 SCLCSYGRWS-DASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDM-IKRS 322

Query: 429 CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLV 488
             PD ++Y +++N +     +D A ++FE M       +V+    LI+   K++R++D  
Sbjct: 323 IDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGT 382

Query: 489 RVFGVSIDRGVKPD 502
            +F     RG+  D
Sbjct: 383 ELFREMSHRGLVGD 396



 Score = 99.0 bits (245), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 145/311 (46%), Gaps = 2/311 (0%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           P+  T  + +  L S   W  +    + +  + + P   + +N  + +     +F   E+
Sbjct: 255 PNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINP-NLVTFNALIDAFVKEGKFVEAEK 313

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L ++M+   I+ D  TY++++      +  D+A + FE M      PD VTY+ ++  + 
Sbjct: 314 LYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFC 373

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           KS +VE+   L+      G   D + ++ L +     GD D  + V ++M S GV P+++
Sbjct: 374 KSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIM 433

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            Y+ LL+ +   GK   A  +FD M +S +  D    T +I+   KA    D  +L+  +
Sbjct: 434 TYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSL 493

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
                  + + YNT+++      L++EA  L + MK  D   P++ +Y  ++  +   G+
Sbjct: 494 SLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMK-EDGPLPNSGTYNTLIRAHLRDGD 552

Query: 449 VDNAIELFEEM 459
              + EL  EM
Sbjct: 553 KAASAELIREM 563



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 105/251 (41%), Gaps = 36/251 (14%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           K+   F ++ S++ FP + + YN  +K     ++ +   +L  EM    +  D +TY+T+
Sbjct: 345 KAKQMFEFMVSKDCFP-DVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTL 403

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
           I         D A + F++M   G+ PD +TYS +LD    +GK+E+ L +++    S  
Sbjct: 404 IQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEI 463

Query: 289 KPDPIAFSVLGKMFGESGDYD------------GIR-----------------------Y 313
           K D   ++ + +   ++G  D            G++                        
Sbjct: 464 KLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYA 523

Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYG 373
           +L++MK  G  PN   YNTL+ A  + G    +  L  EM       D  T+  +  +  
Sbjct: 524 LLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVANMLH 583

Query: 374 KARWAKDALEL 384
             R  K  L++
Sbjct: 584 DGRLDKSFLDM 594


>gi|334183602|ref|NP_176522.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806282|sp|Q9C8T7.2|PP101_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63330
 gi|332195966|gb|AEE34087.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 152/315 (48%), Gaps = 1/315 (0%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           + Y V +  L       L   L N+M + +IE D + ++TII    +    D+A+  F+ 
Sbjct: 151 VTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKE 210

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M   G+ P+ VTYS+++      G+  +   L    +     P+ + F+ L   F + G 
Sbjct: 211 METKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGK 270

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
           +     +  +M    + P++  YN+L+       +   A+ +F+ MV     PD  T   
Sbjct: 271 FVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNT 330

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           LIK + K++  +D  EL+  M       D + Y TL+      G  + A+++F+ M +SD
Sbjct: 331 LIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQM-VSD 389

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
              PD  +Y+ +L+   + G ++ A+E+F+ M +  + +++   T +I+ + KA ++DD 
Sbjct: 390 GVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDG 449

Query: 488 VRVFGVSIDRGVKPD 502
             +F     +GVKP+
Sbjct: 450 WDLFCSLSLKGVKPN 464



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 95/355 (26%), Positives = 168/355 (47%), Gaps = 9/355 (2%)

Query: 192 VTMKSLR----FGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           VT+ SL      G++      L ++MV      D IT++T+I      N   EA+   +R
Sbjct: 81  VTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDR 140

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M + G  P+ VTY  +++   K G ++   +L  +  A+  + D + F+ +     +   
Sbjct: 141 MVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRH 200

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
            D    + +EM++ G++PN+V Y++L+  +   G+   A  L  +M+E  + P+  T  A
Sbjct: 201 VDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNA 260

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           LI  + K     +A +L + M +     D   YN+L+N       +++A+++FE M +S 
Sbjct: 261 LIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFM-VSK 319

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
            C PD  +Y  ++  +     V++  ELF EMS  G+  + +  T LIQ L      D+ 
Sbjct: 320 DCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNA 379

Query: 488 VRVFGVSIDRGVKPDDRLCGCLLSVVSLCETS--EDVGKVITCLQQANPKLVAFL 540
            +VF   +  GV PD      LL    LC     E   +V   +Q++  KL  ++
Sbjct: 380 QKVFKQMVSDGVPPDIMTYSILLD--GLCNNGKLEKALEVFDYMQKSEIKLDIYI 432



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 88/356 (24%), Positives = 169/356 (47%), Gaps = 39/356 (10%)

Query: 184 PMETIF-YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
           P+ +IF +N  + ++   ++F L+  L  +M    I  +  TY+ +I C  R +    A+
Sbjct: 6   PLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLAL 65

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL---- 298
               +M K G  P  VT S++L+ Y    ++ + ++L ++ V  G++PD I F+ L    
Sbjct: 66  ALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGL 125

Query: 299 -------------GKM-----------FG-------ESGDYDGIRYVLQEMKSLGVQPNL 327
                         +M           +G       + GD D    +L +M++  ++ ++
Sbjct: 126 FLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADV 185

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK-IYGKARWAKDALELWE 386
           V++NT+++++ K      A +LF EM   G+ P+  T ++LI  +    RW+ DA +L  
Sbjct: 186 VIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWS-DASQLLS 244

Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
            M E K   + + +N L++     G   EAE+L +DM +     PD ++Y +++N +   
Sbjct: 245 DMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDM-IKRSIDPDIFTYNSLINGFCMH 303

Query: 447 GNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
             +D A ++FE M       ++     LI+   K++R++D   +F     RG+  D
Sbjct: 304 DRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGD 359



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 147/317 (46%), Gaps = 1/317 (0%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + +N  + SL   R       L  EM +  I  + +TYS++I+C      + +A +  
Sbjct: 184 DVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLL 243

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
             M +  + P+ VT++A++D + K GK  E   L++  +     PD   ++ L   F   
Sbjct: 244 SDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMH 303

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
              D  + + + M S    P+L  YNTL++   K+ +      LF EM   GL  D  T 
Sbjct: 304 DRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTY 363

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
           T LI+         +A +++++M  +  P D + Y+ LL+   + G +E+A  +F+ M+ 
Sbjct: 364 TTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQK 423

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
           S+  K D Y YT M+      G VD+  +LF  +S  GV  NV+    +I  L   R + 
Sbjct: 424 SEI-KLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQ 482

Query: 486 DLVRVFGVSIDRGVKPD 502
           +   +     + G  PD
Sbjct: 483 EAYALLKKMKEDGPLPD 499



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 125/258 (48%), Gaps = 1/258 (0%)

Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS 261
           +F   E+L ++M+   I+ D  TY+++I      +  D+A + FE M      PD  TY+
Sbjct: 270 KFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYN 329

Query: 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
            ++  + KS +VE+   L+      G   D + ++ L +     GD D  + V ++M S 
Sbjct: 330 TLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSD 389

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
           GV P+++ Y+ LL+ +   GK   A  +FD M +S +  D    T +I+   KA    D 
Sbjct: 390 GVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDG 449

Query: 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
            +L+  +       + + YNT+++      L++EA  L + MK  D   PD+ +Y  ++ 
Sbjct: 450 WDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMK-EDGPLPDSGTYNTLIR 508

Query: 442 IYGSGGNVDNAIELFEEM 459
            +   G+   + EL  EM
Sbjct: 509 AHLRDGDKAASAELIREM 526



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 117/255 (45%), Gaps = 1/255 (0%)

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M K+  +P    ++ +L   AK  K + V+SL E+    G   +   +++L   F     
Sbjct: 1   MVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQ 60

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
                 +L +M  LG +P++V  ++LL       +   A +L D+MVE G  PD  T T 
Sbjct: 61  ISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTT 120

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           LI        A +A+ L +RM +     + + Y  ++N     G ++ A  L   M+ + 
Sbjct: 121 LIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAK 180

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
             + D   +  +++      +VD+A+ LF+EM   G+  NV+  + LI CL    R  D 
Sbjct: 181 I-EADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDA 239

Query: 488 VRVFGVSIDRGVKPD 502
            ++    I++ + P+
Sbjct: 240 SQLLSDMIEKKINPN 254



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 114/242 (47%), Gaps = 3/242 (1%)

Query: 169 KSYFFFNWIKSQNLFP-METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           K+   F ++ S++ FP ++T  YN  +K     ++ +   +L  EM    +  D +TY+T
Sbjct: 308 KAKQMFEFMVSKDCFPDLDT--YNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTT 365

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           +I         D A + F++M   G+ PD +TYS +LD    +GK+E+ L +++    S 
Sbjct: 366 LIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSE 425

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
            K D   ++ + +   ++G  D    +   +   GV+PN+V YNT++  +        A 
Sbjct: 426 IKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAY 485

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
           +L  +M E G  PD  T   LI+ + +      + EL   MR  ++  D      + NM 
Sbjct: 486 ALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVANML 545

Query: 408 AD 409
            D
Sbjct: 546 HD 547



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 98/215 (45%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN  +       +    +Q+   MVS +   D  TY+T+I    +    ++  E F  M 
Sbjct: 293 YNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMS 352

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
             GL+ D VTY+ ++      G  +    ++++ V+ G  PD + +S+L      +G  +
Sbjct: 353 HRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLE 412

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               V   M+   ++ ++ +Y T++E M KAGK      LF  +   G+ P+  T   +I
Sbjct: 413 KALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMI 472

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
                 R  ++A  L ++M+E+    D   YNTL+
Sbjct: 473 SGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLI 507


>gi|357499777|ref|XP_003620177.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495192|gb|AES76395.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 612

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 144/290 (49%), Gaps = 7/290 (2%)

Query: 203 FQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSA 262
            QL+ ++  ++V   +    + Y+TII    +  L +EA + +  M   G+ PD VTYSA
Sbjct: 181 LQLLRRVDGKLVQPNV----VMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSA 236

Query: 263 ILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG 322
           ++  +   GK+ + + L+ + ++    PD   FS+L   F + G     + VL  M   G
Sbjct: 237 LISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQG 296

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382
           ++P++V Y +L++      +   A+S+F+ M + G+T + ++   +I  + K +   +A+
Sbjct: 297 IKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAM 356

Query: 383 ELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP-DNYSYTAMLN 441
            L++ M       D + YN+L++     G +  A +L ++M   D   P D  +Y ++L+
Sbjct: 357 NLFKEMHCKNIIPDVVTYNSLIDGLCKSGKISYALKLVDEMH--DRGVPHDKITYNSILD 414

Query: 442 IYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
                  VD AI L  +M + G+  ++   T LI  L K  R+ D   +F
Sbjct: 415 ALCKNHQVDKAIALLTKMKDEGIQPDMYTYTILIDGLCKGGRLKDAQNIF 464



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 86/318 (27%), Positives = 144/318 (45%), Gaps = 1/318 (0%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
            + YN  + S+   +       L +EMVS  I  D +TYS +I+        ++AI  F 
Sbjct: 196 VVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLFN 255

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
           +M    + PD  T+S ++D + K G+V+E  ++    +  G KPD + +  L   +    
Sbjct: 256 KMISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVK 315

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
             +  + +   M   GV  N+  YN ++    K  K   A +LF EM    + PD  T  
Sbjct: 316 QVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYN 375

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
           +LI    K+     AL+L + M +   P D I YN++L+       V++A  L   MK  
Sbjct: 376 SLIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMK-D 434

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
           +  +PD Y+YT +++    GG + +A  +FE++   G  I V   T +IQ        D 
Sbjct: 435 EGIQPDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKGYNITVYTYTVMIQGFCDNDLFDK 494

Query: 487 LVRVFGVSIDRGVKPDDR 504
            + +     D G  P+ +
Sbjct: 495 ALALLSKMEDNGCIPNAK 512



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 81/323 (25%), Positives = 152/323 (47%), Gaps = 2/323 (0%)

Query: 181 NLFPMETIF-YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFD 239
           N+ P   IF +   + SL     +Q    L  EM  N I  D +T++ +I C  +     
Sbjct: 49  NINPTPPIFEFGKILGSLVKINCYQTAISLHREMEFNGIASDLVTFNILINCFSQLGHTH 108

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
            +   F  + K G  P+ +T + ++      G++ + L  +++ VA G+  + + +  L 
Sbjct: 109 FSFSVFANILKKGYEPNAITLTTLIKGLCLKGQIHQALHFHDKVVALGFHLNKVCYGTLI 168

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
               + G       +L+ +    VQPN+V+YNT++++M K      A  L+ EMV  G++
Sbjct: 169 NGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGIS 228

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
           PD  T +ALI  +       DA+ L+ +M   +   D   ++ L++     G V+EA+ +
Sbjct: 229 PDVVTYSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCKEGRVKEAKNV 288

Query: 420 FEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479
              M +    KPD  +Y ++++ Y     V+ A  +F  M++ GV  NV     +I    
Sbjct: 289 LA-MMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFC 347

Query: 480 KARRIDDLVRVFGVSIDRGVKPD 502
           K +++D+ + +F     + + PD
Sbjct: 348 KIKKVDEAMNLFKEMHCKNIIPD 370



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/312 (23%), Positives = 142/312 (45%), Gaps = 7/312 (2%)

Query: 194 MKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGL 253
           +K L    Q        +++V+    L+ + Y T+I    +      A++   R+    +
Sbjct: 133 IKGLCLKGQIHQALHFHDKVVALGFHLNKVCYGTLINGLCKVGQTSAALQLLRRVDGKLV 192

Query: 254 MPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRY 313
            P+ V Y+ I+D   K   V E   LY   V+ G  PD + +S L   F   G  +    
Sbjct: 193 QPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIG 252

Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYG 373
           +  +M S  + P++  ++ L++   K G+   A+++   M++ G+ PD  T  +L+  Y 
Sbjct: 253 LFNKMISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYC 312

Query: 374 KARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCK--- 430
             +    A  ++  M +     +   YN ++N    I  V+EA  LF++M    +CK   
Sbjct: 313 LVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEM----HCKNII 368

Query: 431 PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRV 490
           PD  +Y ++++     G +  A++L +EM + GV  + +    ++  L K  ++D  + +
Sbjct: 369 PDVVTYNSLIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIAL 428

Query: 491 FGVSIDRGVKPD 502
                D G++PD
Sbjct: 429 LTKMKDEGIQPD 440



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/261 (23%), Positives = 115/261 (44%), Gaps = 1/261 (0%)

Query: 242 IEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKM 301
           +  F R+      P    +  IL    K    +  +SL+     +G   D + F++L   
Sbjct: 41  VSSFNRILNINPTPPIFEFGKILGSLVKINCYQTAISLHREMEFNGIASDLVTFNILINC 100

Query: 302 FGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD 361
           F + G       V   +   G +PN +   TL++ +   G+   A    D++V  G   +
Sbjct: 101 FSQLGHTHFSFSVFANILKKGYEPNAITLTTLIKGLCLKGQIHQALHFHDKVVALGFHLN 160

Query: 362 EKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFE 421
           +     LI    K      AL+L  R+       + ++YNT+++    + LV EA  L+ 
Sbjct: 161 KVCYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYS 220

Query: 422 DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
           +M +S    PD  +Y+A+++ +   G +++AI LF +M    +  +V   + L+    K 
Sbjct: 221 EM-VSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCKE 279

Query: 482 RRIDDLVRVFGVSIDRGVKPD 502
            R+ +   V  + + +G+KPD
Sbjct: 280 GRVKEAKNVLAMMMKQGIKPD 300



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 97/206 (47%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + Y   M      +Q    + + N M    +  +  +Y+ +I    +    DEA+  F
Sbjct: 300 DVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLF 359

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           + M+   ++PD VTY++++D   KSGK+   L L +     G   D I ++ +     ++
Sbjct: 360 KEMHCKNIIPDVVTYNSLIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCKN 419

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
              D    +L +MK  G+QP++  Y  L++ + K G+   A+++F++++  G      T 
Sbjct: 420 HQVDKAIALLTKMKDEGIQPDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKGYNITVYTY 479

Query: 366 TALIKIYGKARWAKDALELWERMREN 391
           T +I+ +        AL L  +M +N
Sbjct: 480 TVMIQGFCDNDLFDKALALLSKMEDN 505



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 91/186 (48%), Gaps = 1/186 (0%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F  +  +N+ P + + YN  +  L    +     +L +EM    +  D ITY++I+   
Sbjct: 358 LFKEMHCKNIIP-DVVTYNSLIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDAL 416

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            + +  D+AI    +M   G+ PD  TY+ ++D   K G++++  +++E  +  G+    
Sbjct: 417 CKNHQVDKAIALLTKMKDEGIQPDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKGYNITV 476

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
             ++V+ + F ++  +D    +L +M+  G  PN   Y  ++ ++ +  +  +A  L  E
Sbjct: 477 YTYTVMIQGFCDNDLFDKALALLSKMEDNGCIPNAKTYEIIILSLFEKDENDMAEKLLRE 536

Query: 353 MVESGL 358
           M+  GL
Sbjct: 537 MIARGL 542


>gi|326527027|dbj|BAK04455.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 162/335 (48%), Gaps = 9/335 (2%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           K+   F+ +  Q + P + + YN+ + +L   R     E +  +M +N  + D +TY+ +
Sbjct: 283 KACSLFHEMTRQGVKP-DVVTYNLIIDALCKARAMDKAELVLRQMTTNGAQPDTVTYNCM 341

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
           I          EA + F +M   GL+P+ V  ++ L    K G+ +E   +++   A G 
Sbjct: 342 IHGYATLGRLKEAAKMFRKMKSRGLIPNIVICNSFLASLCKHGRSKEAAEIFDSMTAKGH 401

Query: 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348
           KPD +++  L   +   G +  +  +   MKS G+  +  V+N L+ A  K G    A  
Sbjct: 402 KPDIVSYCTLLHGYASEGWFADMIGLFNSMKSNGIAADCRVFNILIHAYAKRGMVDDAML 461

Query: 349 LFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL-NMC 407
           +F EM + G++PD  T + +I  + +     DA+E + +M       +  +Y++++   C
Sbjct: 462 IFTEMQQQGVSPDVVTYSTVISAFSRMGRLTDAMEKFNQMVARGIQPNTAVYHSIIQGFC 521

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
              GLV +A+ L  +M      +PD   + +++N     G V +A ++F+ ++++G   +
Sbjct: 522 MHGGLV-KAKELVSEMINKGIPRPDIVFFNSVINSLCKDGRVMDAHDIFDLVTDIGERPD 580

Query: 468 VMGCT------CLIQCLGKARRIDDLVRVFGVSID 496
           V+  T      CL+  + KA +I D + V GV  D
Sbjct: 581 VITFTSLIDGYCLVGKMDKAFKILDAMEVVGVETD 615



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 91/379 (24%), Positives = 173/379 (45%), Gaps = 13/379 (3%)

Query: 182 LFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEA 241
           + P+    Y++ M      R+  L   L   ++   +++  IT ST++ C    N  +EA
Sbjct: 152 VVPLTVHTYSILMDCCCRARRPDLGLVLFGCILRTGLKIHQITASTLLKCLCYANRTEEA 211

Query: 242 IE-WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG--WKPDPIAFSVL 298
           +     RM + G +P+  +YS IL     +   +  L L++     G    P+ +A++ +
Sbjct: 212 VNVLLHRMSELGCVPNVFSYSIILKGLCDNSMSQRALDLFQMMAKEGGACSPNVVAYNTV 271

Query: 299 GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
              F + G+      +  EM   GV+P++V YN +++A+ KA     A  +  +M  +G 
Sbjct: 272 IHGFFKEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTNGA 331

Query: 359 TPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAER 418
            PD  T   +I  Y      K+A +++ +M+      + ++ N+ L      G  +EA  
Sbjct: 332 QPDTVTYNCMIHGYATLGRLKEAAKMFRKMKSRGLIPNIVICNSFLASLCKHGRSKEAAE 391

Query: 419 LFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL 478
           +F+ M    + KPD  SY  +L+ Y S G   + I LF  M   G+A +      LI   
Sbjct: 392 IFDSMTAKGH-KPDIVSYCTLLHGYASEGWFADMIGLFNSMKSNGIAADCRVFNILIHAY 450

Query: 479 GKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVA 538
            K   +DD + +F     +GV PD      +++  ++      +G++   +++ N ++VA
Sbjct: 451 AKRGMVDDAMLIFTEMQQQGVSPD------VVTYSTVISAFSRMGRLTDAMEKFN-QMVA 503

Query: 539 FLNLIEDNSTGFENIKEEF 557
               I+ N+  + +I + F
Sbjct: 504 --RGIQPNTAVYHSIIQGF 520



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 141/293 (48%), Gaps = 5/293 (1%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITY--STIITC 231
           FN + ++ + P   +++++       G   +  ++L +EM++  I   +I +  S I + 
Sbjct: 498 FNQMVARGIQPNTAVYHSIIQGFCMHGGLVK-AKELVSEMINKGIPRPDIVFFNSVINSL 556

Query: 232 AKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291
            K   + D A + F+ +   G  PD +T+++++D Y   GK+++   + +     G + D
Sbjct: 557 CKDGRVMD-AHDIFDLVTDIGERPDVITFTSLIDGYCLVGKMDKAFKILDAMEVVGVETD 615

Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
            + +S L   + ++G  +    + +EM+  GV+PN V Y  +L  + +AG+   AR  F 
Sbjct: 616 IVTYSTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFH 675

Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411
           EM+ESG T        ++    +   A +A+ L++++          + NT++N    + 
Sbjct: 676 EMIESGTTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMNVKFSITILNTMINAMYKVQ 735

Query: 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
             EEA+ LF  +  S    P+  +Y  M+      G V++A  +F  M + G+
Sbjct: 736 RKEEAKELFATISASGLL-PNESTYGVMIINLLKDGAVEDANNMFSSMEKSGI 787



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 85/345 (24%), Positives = 147/345 (42%), Gaps = 19/345 (5%)

Query: 170 SYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTII 229
           +   F  ++ Q + P    +  V     R GR    +E+  N+MV+  I+ +   Y +II
Sbjct: 459 AMLIFTEMQQQGVSPDVVTYSTVISAFSRMGRLTDAMEKF-NQMVARGIQPNTAVYHSII 517

Query: 230 TCAKRCNLFDEAIEWFERMYKTGL-MPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
                     +A E    M   G+  PD V ++++++   K G+V +   +++     G 
Sbjct: 518 QGFCMHGGLVKAKELVSEMINKGIPRPDIVFFNSVINSLCKDGRVMDAHDIFDLVTDIGE 577

Query: 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348
           +PD I F+ L   +   G  D    +L  M+ +GV+ ++V Y+TLL+   K G+     +
Sbjct: 578 RPDVITFTSLIDGYCLVGKMDKAFKILDAMEVVGVETDIVTYSTLLDGYFKNGRINDGLT 637

Query: 349 LFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL---- 404
           LF EM   G+ P+  T   ++    +A     A + +  M E+   +   +Y  +L    
Sbjct: 638 LFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYGIILGGLC 697

Query: 405 -NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYT---AMLNIYGSGGNVDNAIELFEEMS 460
            N CAD     EA  LF+ +   +      +S T    M+N        + A ELF  +S
Sbjct: 698 RNNCAD-----EAIILFQKLGTMNV----KFSITILNTMINAMYKVQRKEEAKELFATIS 748

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRL 505
             G+  N      +I  L K   ++D   +F      G+ P  RL
Sbjct: 749 ASGLLPNESTYGVMIINLLKDGAVEDANNMFSSMEKSGIVPGSRL 793



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 105/222 (47%), Gaps = 10/222 (4%)

Query: 198 RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDE 257
           +  + F++++  A E+V   +E D +TYST++    +    ++ +  F  M + G+ P+ 
Sbjct: 596 KMDKAFKILD--AMEVVG--VETDIVTYSTLLDGYFKNGRINDGLTLFREMQRKGVKPNT 651

Query: 258 VTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG---ESGDYDGIRYV 314
           VTY  +L    ++G+       +   + SG     +  S+ G + G    +   D    +
Sbjct: 652 VTYGIMLAGLFRAGRTVAARKKFHEMIESGTT---VTVSIYGIILGGLCRNNCADEAIIL 708

Query: 315 LQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK 374
            Q++ ++ V+ ++ + NT++ AM K  +   A+ LF  +  SGL P+E T   +I    K
Sbjct: 709 FQKLGTMNVKFSITILNTMINAMYKVQRKEEAKELFATISASGLLPNESTYGVMIINLLK 768

Query: 375 ARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEA 416
               +DA  ++  M ++       L N ++ M  + G + +A
Sbjct: 769 DGAVEDANNMFSSMEKSGIVPGSRLLNRIIRMLLEKGEIAKA 810


>gi|358346916|ref|XP_003637510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503445|gb|AES84648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 718

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 114/474 (24%), Positives = 209/474 (44%), Gaps = 60/474 (12%)

Query: 55  PNPETKTLSLSEQLKPLSSTTLSPTKNDRTP-LLSKPKSTWVNPTKPRRSVLSLQRQKRS 113
           P+P  +TL+      P    + S     + P L + P ST  +P  P  ++L LQ  + S
Sbjct: 11  PHPFPRTLNPHPHSTPTPPLSFSSNSTFKFPTLCTTPSSTTHHPLPPNETLL-LQLTQSS 69

Query: 114 TYSYNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTRENALLILNSLKFWQKSYFF 173
           ++                 D   T    L++   IP+  T      ++ S   + +    
Sbjct: 70  SF-----------------DSITTLLKQLKSSGSIPNATTFAT---LIQSFTNFHEIENL 109

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
              ++++  F  +T FYN+ + +L    + +L+E L ++MV+  I LD  T++ +I    
Sbjct: 110 LKILENELGFKPDTNFYNIALNALVEDNKLKLVEMLHSKMVNEGIVLDVSTFNVLIKALC 169

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
           + +    AI   E M   GL PDE+T++ ++  + + G +   L + ++ +  G     +
Sbjct: 170 KAHQLRPAILMLEEMANHGLKPDEITFTTLMQGFIEEGDLNGALKMKKQMLGYGCLLTNV 229

Query: 294 AFSVLGKMFGESGDY-DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           +  VL   F + G   + +R+VL E+   G  P+ V +N+L+    + G    A  + D 
Sbjct: 230 SVKVLVNGFCKEGRVEEALRFVL-EVSEEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDF 288

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN-MCAD-- 409
           M+E G  PD  T  +LI    K    + A+E+ ++M   +   + + YNTL++ +C +  
Sbjct: 289 MIEKGFDPDVYTYNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYNTLISALCKENE 348

Query: 410 -------------IGLVEE-------------------AERLFEDMKLSDYCKPDNYSYT 437
                         GL+ +                   A  +FE+MK +  CKPD ++Y+
Sbjct: 349 IEAATDLARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMK-NKGCKPDEFTYS 407

Query: 438 AMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
            +++       +  A+ L +EM   G A N +    LI  L K+RRI+D   +F
Sbjct: 408 ILIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGLCKSRRIEDAEEIF 461



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 147/313 (46%), Gaps = 1/313 (0%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN  +  +    +F+   ++  +M+  E   + +TY+T+I+   + N  + A +    + 
Sbjct: 301 YNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYNTLISALCKENEIEAATDLARILV 360

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
             GL+PD  T++ ++     S   +  + ++E     G KPD   +S+L           
Sbjct: 361 SKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLK 420

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               +L+EM+S G   N VVYNTL++ + K+ +   A  +FD+M   G++    T   LI
Sbjct: 421 EALMLLKEMESSGCARNAVVYNTLIDGLCKSRRIEDAEEIFDQMELLGVSRSSVTYNTLI 480

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
               K +  ++A +L ++M       D   YN+LL     +G +E+A  + + M  S+ C
Sbjct: 481 DGLCKNKRVEEASQLMDQMIMEGLKPDKFTYNSLLTYFCRVGDIEKAGDIVQTMA-SNGC 539

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
           +PD ++Y  ++      G VD A +L   +   G+ +       +IQ L   +R  + +R
Sbjct: 540 EPDIFTYGTLIGGLCRAGRVDVASKLLRSVQMKGIVLTPHAYNPVIQALFMRKRTKEGMR 599

Query: 490 VFGVSIDRGVKPD 502
           +F   +++   PD
Sbjct: 600 LFREMMEKSDPPD 612



 Score =  102 bits (254), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 133/273 (48%), Gaps = 1/273 (0%)

Query: 213 MVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK 272
           M+    + D  TY+++I+   +   F++AIE  ++M      P+ VTY+ ++    K  +
Sbjct: 289 MIEKGFDPDVYTYNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYNTLISALCKENE 348

Query: 273 VEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNT 332
           +E    L    V+ G  PD   F+ L +    S + D    + +EMK+ G +P+   Y+ 
Sbjct: 349 IEAATDLARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSI 408

Query: 333 LLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENK 392
           L++++    +   A  L  EM  SG   +      LI    K+R  +DA E++++M    
Sbjct: 409 LIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGLCKSRRIEDAEEIFDQMELLG 468

Query: 393 WPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNA 452
                + YNTL++       VEEA +L + M + +  KPD ++Y ++L  +   G+++ A
Sbjct: 469 VSRSSVTYNTLIDGLCKNKRVEEASQLMDQM-IMEGLKPDKFTYNSLLTYFCRVGDIEKA 527

Query: 453 IELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
            ++ + M+  G   ++     LI  L +A R+D
Sbjct: 528 GDIVQTMASNGCEPDIFTYGTLIGGLCRAGRVD 560



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 147/331 (44%), Gaps = 17/331 (5%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           F  +K++   P E   Y++ + SL + R+ +    L  EM S+    + + Y+T+I    
Sbjct: 391 FEEMKNKGCKPDE-FTYSILIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGLC 449

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
           +    ++A E F++M   G+    VTY+ ++D   K+ +VEE   L ++ +  G KPD  
Sbjct: 450 KSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKF 509

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
            ++ L   F   GD +    ++Q M S G +P++  Y TL+  + +AG+  +A  L   +
Sbjct: 510 TYNSLLTYFCRVGDIEKAGDIVQTMASNGCEPDIFTYGTLIGGLCRAGRVDVASKLLRSV 569

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL-NMCADIGL 412
              G+         +I+     +  K+ + L+  M E   P D + +  +   +C   G 
Sbjct: 570 QMKGIVLTPHAYNPVIQALFMRKRTKEGMRLFREMMEKSDPPDALTHKIVFRGLCNGGGP 629

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE------EMSELGVAI 466
           ++EA     +M L     P+  S+  +     S    D  IEL        +MSE     
Sbjct: 630 IQEAIDFTVEM-LEKGILPEFPSFGFLAEGLCSLSMEDTLIELINMVMEKAQMSERE--- 685

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDR 497
                T +I+   K R+ +D +   G  +DR
Sbjct: 686 -----TSMIRGFLKIRKFNDALANLGGILDR 711



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 97/425 (22%), Positives = 186/425 (43%), Gaps = 19/425 (4%)

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           P ET+   +T  S      F  I  L  ++ S+    +  T++T+I      +  +  ++
Sbjct: 57  PNETLLLQLTQSS-----SFDSITTLLKQLKSSGSIPNATTFATLIQSFTNFHEIENLLK 111

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
             E   + G  PD   Y+  L+   +  K++ V  L+ + V  G   D   F+VL K   
Sbjct: 112 ILEN--ELGFKPDTNFYNIALNALVEDNKLKLVEMLHSKMVNEGIVLDVSTFNVLIKALC 169

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
           ++        +L+EM + G++P+ + + TL++   + G    A  +  +M+  G      
Sbjct: 170 KAHQLRPAILMLEEMANHGLKPDEITFTTLMQGFIEEGDLNGALKMKKQMLGYGCLLTNV 229

Query: 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
           ++  L+  + K    ++AL     + E  +  D + +N+L+N    IG V +A  +  D 
Sbjct: 230 SVKVLVNGFCKEGRVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDALDIV-DF 288

Query: 424 KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483
            +     PD Y+Y ++++     G  + AIE+ ++M     + N +    LI  L K   
Sbjct: 289 MIEKGFDPDVYTYNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYNTLISALCKENE 348

Query: 484 ID---DLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFL 540
           I+   DL R+    + +G+ PD      L+  + L +  +   ++   ++    K   F 
Sbjct: 349 IEAATDLARIL---VSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFT 405

Query: 541 NLIEDNSTGFENIKEEFRNVIKDTEVD--ARRPFC-NCLID-ICRNRNLNERAHELLYLG 596
             I  +S  +E   +E   ++K+ E    AR     N LID +C++R + E A E+    
Sbjct: 406 YSILIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGLCKSRRI-EDAEEIFDQM 464

Query: 597 TLYGL 601
            L G+
Sbjct: 465 ELLGV 469


>gi|302821471|ref|XP_002992398.1| hypothetical protein SELMODRAFT_135281 [Selaginella moellendorffii]
 gi|300139814|gb|EFJ06548.1| hypothetical protein SELMODRAFT_135281 [Selaginella moellendorffii]
          Length = 698

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 151/337 (44%), Gaps = 1/337 (0%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN  +       Q Q I+ +   +    + ++ ITY  +I    R  L D     ++ M 
Sbjct: 320 YNTLLGGYSRKGQLQQIDTVKTLLRDTGMSINKITYCLLIDAYARAGLMDRLEALYQEMR 379

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
              + P+   Y+ ++ +Y  +G+ ++ + L      +G  PD   ++V+   FG +   +
Sbjct: 380 DCDIRPNTYMYARMITIYRDTGQWQKGVKLLREMQQAGVTPDAHVYNVIINTFGRTRQLE 439

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
             R    +M+  G++P++V +N+L++A  KAG+P  AR L+ +MV  G  P  +T   +I
Sbjct: 440 QARIAFFKMQDGGIEPDVVSWNSLIDACCKAGQPLEARKLYYKMVNDGCAPTAQTFNIVI 499

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
              G+ +   D  E+ E MR      + + Y TL+++ A   L ++A    + MK  D  
Sbjct: 500 HGLGEHKRWNDVNEMVEEMRSKGMFPNVVTYTTLVDVYAQARLFQDAVECLQTMK-EDGM 558

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
            P   +Y+A+ N Y   G  +  + + + M +  + IN+     LI     A R  +   
Sbjct: 559 GPSPTAYSALANAYAQLGMCEQTLHVLQTMEKENIEINLAMLNLLINAFSMAGRSQEAFA 618

Query: 490 VFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           VF    + G+  D      L+  +   E  ++V  V 
Sbjct: 619 VFEYIKEAGLTADKITYTTLMKALIRAEKLDEVSGVF 655



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 85/402 (21%), Positives = 174/402 (43%), Gaps = 46/402 (11%)

Query: 183 FPMETIFYNVTMKSLRFG-----RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNL 237
           FP + + Y   +++ R G       F+L +    EM +  +++D   Y+ +I    + + 
Sbjct: 207 FPPDVVSYTHVIQACRHGVVDIYTGFRLFQ----EMQAEGVQVDGKVYNDLIFACGQAHK 262

Query: 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
            +E + + E++  +GL+ D  +Y +++    K G+  E  +L E     G +P+  A++ 
Sbjct: 263 PNEGMFFLEKLQASGLVADRDSYISLMLSLGKHGRTAEAEALLEEMKWYGLRPNLKAYNT 322

Query: 298 L-------GKM----------------------------FGESGDYDGIRYVLQEMKSLG 322
           L       G++                            +  +G  D +  + QEM+   
Sbjct: 323 LLGGYSRKGQLQQIDTVKTLLRDTGMSINKITYCLLIDAYARAGLMDRLEALYQEMRDCD 382

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382
           ++PN  +Y  ++      G+      L  EM ++G+TPD      +I  +G+ R  + A 
Sbjct: 383 IRPNTYMYARMITIYRDTGQWQKGVKLLREMQQAGVTPDAHVYNVIINTFGRTRQLEQAR 442

Query: 383 ELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNI 442
             + +M++     D + +N+L++ C   G   EA +L+  M ++D C P   ++  +++ 
Sbjct: 443 IAFFKMQDGGIEPDVVSWNSLIDACCKAGQPLEARKLYYKM-VNDGCAPTAQTFNIVIHG 501

Query: 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            G     ++  E+ EEM   G+  NV+  T L+    +AR   D V       + G+ P 
Sbjct: 502 LGEHKRWNDVNEMVEEMRSKGMFPNVVTYTTLVDVYAQARLFQDAVECLQTMKEDGMGPS 561

Query: 503 DRLCGCLLSVVSLCETSEDVGKVITCLQQANPKL-VAFLNLI 543
                 L +  +     E    V+  +++ N ++ +A LNL+
Sbjct: 562 PTAYSALANAYAQLGMCEQTLHVLQTMEKENIEINLAMLNLL 603



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 72/332 (21%), Positives = 151/332 (45%), Gaps = 7/332 (2%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
              W++  +      +  +V +      R+     ++A ++ SN   L    Y+ ++   
Sbjct: 130 LLEWLRENSFCRTYDVLDSVVIHGYGRERKLHKALEVAEKLGSN---LQRRGYNALVGAY 186

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVE--EVLSLYERGVASGWKP 290
            +   + +A+E   +M   G  PD V+Y+ ++    + G V+      L++   A G + 
Sbjct: 187 AQNRDYGKALETLSKMKTLGFPPDVVSYTHVIQA-CRHGVVDIYTGFRLFQEMQAEGVQV 245

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
           D   ++ L    G++   +   + L+++++ G+  +   Y +L+ ++GK G+   A +L 
Sbjct: 246 DGKVYNDLIFACGQAHKPNEGMFFLEKLQASGLVADRDSYISLMLSLGKHGRTAEAEALL 305

Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
           +EM   GL P+ K    L+  Y +    +    +   +R+    ++ I Y  L++  A  
Sbjct: 306 EEMKWYGLRPNLKAYNTLLGGYSRKGQLQQIDTVKTLLRDTGMSINKITYCLLIDAYARA 365

Query: 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG 470
           GL++  E L+++M+  D  +P+ Y Y  M+ IY   G     ++L  EM + GV  +   
Sbjct: 366 GLMDRLEALYQEMRDCD-IRPNTYMYARMITIYRDTGQWQKGVKLLREMQQAGVTPDAHV 424

Query: 471 CTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
              +I   G+ R+++     F    D G++PD
Sbjct: 425 YNVIINTFGRTRQLEQARIAFFKMQDGGIEPD 456



 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 65/282 (23%), Positives = 116/282 (41%), Gaps = 47/282 (16%)

Query: 124 LKLFARKLNDCDNTEEAFLRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLF 183
           L+   +++ DCD     ++ A             + I      WQK       ++   + 
Sbjct: 371 LEALYQEMRDCDIRPNTYMYA-----------RMITIYRDTGQWQKGVKLLREMQQAGVT 419

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIIT------------- 230
           P +   YNV + +    RQ +       +M    IE D ++++++I              
Sbjct: 420 P-DAHVYNVIINTFGRTRQLEQARIAFFKMQDGGIEPDVVSWNSLIDACCKAGQPLEARK 478

Query: 231 ---------CAKRCNLFDEAI-------------EWFERMYKTGLMPDEVTYSAILDVYA 268
                    CA     F+  I             E  E M   G+ P+ VTY+ ++DVYA
Sbjct: 479 LYYKMVNDGCAPTAQTFNIVIHGLGEHKRWNDVNEMVEEMRSKGMFPNVVTYTTLVDVYA 538

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           ++   ++ +   +     G  P P A+S L   + + G  +   +VLQ M+   ++ NL 
Sbjct: 539 QARLFQDAVECLQTMKEDGMGPSPTAYSALANAYAQLGMCEQTLHVLQTMEKENIEINLA 598

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK 370
           + N L+ A   AG+   A ++F+ + E+GLT D+ T T L+K
Sbjct: 599 MLNLLINAFSMAGRSQEAFAVFEYIKEAGLTADKITYTTLMK 640



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 88/175 (50%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           +N+ +  L   +++  + ++  EM S  +  + +TY+T++    +  LF +A+E  + M 
Sbjct: 495 FNIVIHGLGEHKRWNDVNEMVEEMRSKGMFPNVVTYTTLVDVYAQARLFQDAVECLQTMK 554

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
           + G+ P    YSA+ + YA+ G  E+ L + +       + +    ++L   F  +G   
Sbjct: 555 EDGMGPSPTAYSALANAYAQLGMCEQTLHVLQTMEKENIEINLAMLNLLINAFSMAGRSQ 614

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
               V + +K  G+  + + Y TL++A+ +A K      +FDEM+++G  PD K 
Sbjct: 615 EAFAVFEYIKEAGLTADKITYTTLMKALIRAEKLDEVSGVFDEMIKAGCRPDGKA 669



 Score = 43.1 bits (100), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 35/174 (20%), Positives = 74/174 (42%), Gaps = 2/174 (1%)

Query: 129 RKLNDCDNTEEAFLRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETI 188
           ++ ND +   E  +R+    P+  T    + +    + +Q +      +K   + P  T 
Sbjct: 506 KRWNDVNEMVEE-MRSKGMFPNVVTYTTLVDVYAQARLFQDAVECLQTMKEDGMGPSPTA 564

Query: 189 FYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERM 248
           +  +     + G   Q +  L   M    IE++    + +I          EA   FE +
Sbjct: 565 YSALANAYAQLGMCEQTLHVLQT-MEKENIEINLAMLNLLINAFSMAGRSQEAFAVFEYI 623

Query: 249 YKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
            + GL  D++TY+ ++    ++ K++EV  +++  + +G +PD  A  +L   F
Sbjct: 624 KEAGLTADKITYTTLMKALIRAEKLDEVSGVFDEMIKAGCRPDGKAKDMLRSAF 677


>gi|326522248|dbj|BAK07586.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 548

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/277 (27%), Positives = 138/277 (49%), Gaps = 2/277 (0%)

Query: 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
            D A++  + M   G++PD VTY+ +L  Y     ++    L++  +A G  PD   ++V
Sbjct: 221 LDAALKVLDEMPGWGIVPDVVTYTTVLSAYCAKEDLKGAQKLFDDIIAGGRVPDVTMYTV 280

Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
           L   +  +G       ++ EM++ GVQPN V Y+ ++EA  K GK   A +L  EM+ +G
Sbjct: 281 LIDGYCRTGKIQDAARIMDEMEAAGVQPNEVTYSVVIEACCKEGKSAEACNLMREMLGAG 340

Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417
            TPD      ++ +  +   A++A ++W  M +   P D  + NTL+      G+V EA 
Sbjct: 341 HTPDTPLAAKVVDVMCQDGKAEEAHQMWRWMVKKNVPPDNTITNTLIYWLCKSGMVREAR 400

Query: 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
           +LF++++   Y KP   +Y ++++     G +  A +++++M E     N M    LI+ 
Sbjct: 401 KLFDELE-KGY-KPSLLTYNSLISGLCENGELQEAGKVWDDMVERRYEPNAMTYEALIKG 458

Query: 478 LGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVS 514
             K  + D+   VF   + +G  P   L   L+  +S
Sbjct: 459 FCKIGKPDEGAAVFTEMVTKGCAPSKVLYQVLVDSLS 495



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 118/257 (45%), Gaps = 4/257 (1%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + Y   + +       +  ++L +++++     D   Y+ +I    R     +A    
Sbjct: 239 DVVTYTTVLSAYCAKEDLKGAQKLFDDIIAGGRVPDVTMYTVLIDGYCRTGKIQDAARIM 298

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD-PIAFSVLGKMFGE 304
           + M   G+ P+EVTYS +++   K GK  E  +L    + +G  PD P+A  V+  M  +
Sbjct: 299 DEMEAAGVQPNEVTYSVVIEACCKEGKSAEACNLMREMLGAGHTPDTPLAAKVVDVMC-Q 357

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
            G  +    + + M    V P+  + NTL+  + K+G    AR LFDE+ E G  P   T
Sbjct: 358 DGKAEEAHQMWRWMVKKNVPPDNTITNTLIYWLCKSGMVREARKLFDEL-EKGYKPSLLT 416

Query: 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
             +LI    +    ++A ++W+ M E ++  + + Y  L+     IG  +E   +F +M 
Sbjct: 417 YNSLISGLCENGELQEAGKVWDDMVERRYEPNAMTYEALIKGFCKIGKPDEGAAVFTEM- 475

Query: 425 LSDYCKPDNYSYTAMLN 441
           ++  C P    Y  +++
Sbjct: 476 VTKGCAPSKVLYQVLVD 492


>gi|297848948|ref|XP_002892355.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338197|gb|EFH68614.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 988

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 96/374 (25%), Positives = 162/374 (43%), Gaps = 47/374 (12%)

Query: 203 FQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSA 262
            +L E+  +EM++  + L+ I  S+   C      +++A      M   G +PD  TYS 
Sbjct: 429 LELAEKAYSEMLATGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSK 488

Query: 263 ILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG 322
           +L     + K+E    L+E     G   D   ++++   F ++G  +  R    EM+ +G
Sbjct: 489 VLGYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVG 548

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382
             PN+V Y  L+ A  KA K   A  LF+ M+  G  P+  T +ALI  + KA   + A 
Sbjct: 549 CTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQMEKAC 608

Query: 383 ELWERM-----------------RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
           +++ERM                  +N    + ++Y  LL+    +  VEEA +L + M +
Sbjct: 609 QIFERMCGSKDVPDVDMYFKQYDDDNSERPNVVIYGALLDGFCKLHRVEEARKLLDAMSM 668

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
              C+P+   Y A+++     G +D A E+  EMSE G    +   + LI    K +R D
Sbjct: 669 EG-CEPNQIVYDALIDGLCKVGKLDEAQEVKAEMSEHGFPATLYTYSSLIDRYFKVKRQD 727

Query: 486 DLVRVFGVSIDRGVKPD--------DRLC------------------GCLLSVVS---LC 516
              +V    ++    P+        D LC                  GC  +VV+   + 
Sbjct: 728 LASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMI 787

Query: 517 ETSEDVGKVITCLQ 530
           +    +GK+ TCL+
Sbjct: 788 DGFGRIGKIETCLE 801



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 92/371 (24%), Positives = 161/371 (43%), Gaps = 54/371 (14%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           ++K++     +  Q   P +T  Y+  +  L    + +L   L  EM    +  D  TY+
Sbjct: 464 YEKAFSVIREMIGQGFIP-DTSTYSKVLGYLCNASKMELAFLLFEEMKRGGLVADVYTYT 522

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
            ++    +  L ++A +WF  M + G  P+ VTY+A++  Y K+ KV     L+E  ++ 
Sbjct: 523 IMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSE 582

Query: 287 GWKPDPIAFSVL-------GKM----------------------FGESGD---------- 307
           G  P+ + +S L       G+M                      F +  D          
Sbjct: 583 GCLPNIVTYSALIDGHCKAGQMEKACQIFERMCGSKDVPDVDMYFKQYDDDNSERPNVVI 642

Query: 308 ----YDGI---------RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMV 354
                DG          R +L  M   G +PN +VY+ L++ + K GK   A+ +  EM 
Sbjct: 643 YGALLDGFCKLHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKAEMS 702

Query: 355 ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
           E G      T ++LI  Y K +    A ++  +M EN    + ++Y  +++    +G  +
Sbjct: 703 EHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTD 762

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
           EA +L + M+    C+P+  +YTAM++ +G  G ++  +EL E M   GVA N +    L
Sbjct: 763 EAYKLMQMME-EKGCQPNVVTYTAMIDGFGRIGKIETCLELLERMGSKGVAPNYVTYRVL 821

Query: 475 IQCLGKARRID 485
           I    K   +D
Sbjct: 822 IDHCCKNGALD 832



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 93/202 (46%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           + Y  ++    + +  +EA +  + M   G  P+++ Y A++D   K GK++E   +   
Sbjct: 641 VIYGALLDGFCKLHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKAE 700

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
               G+      +S L   + +    D    VL +M      PN+V+Y  +++ + K GK
Sbjct: 701 MSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGK 760

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
              A  L   M E G  P+  T TA+I  +G+    +  LEL ERM       +++ Y  
Sbjct: 761 TDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGRIGKIETCLELLERMGSKGVAPNYVTYRV 820

Query: 403 LLNMCADIGLVEEAERLFEDMK 424
           L++ C   G ++ A  L E+MK
Sbjct: 821 LIDHCCKNGALDVAHNLLEEMK 842



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 126/285 (44%), Gaps = 11/285 (3%)

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
           +++  EM  +       TYS++I    +    D A +   +M +    P+ V Y+ ++D 
Sbjct: 695 QEVKAEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDG 754

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
             K GK +E   L +     G +P+ + ++ +   FG  G  +    +L+ M S GV PN
Sbjct: 755 LCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGRIGKIETCLELLERMGSKGVAPN 814

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
            V Y  L++   K G   +A +L +EM ++           +I+ + K     ++L L +
Sbjct: 815 YVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHAAGYRKVIEGFNKEFI--ESLGLLD 872

Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK-----LSDYCKPDNYSYTAMLN 441
            + ++       LY  L++       +E A RL E++      L DY    + +Y +++ 
Sbjct: 873 EIGQDDTAPFLSLYRLLVDNLIKAQRLEMALRLLEEVATFSATLVDY----SSTYNSLIE 928

Query: 442 IYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
                  VD A  LF EMS+ GV   +     LI+ L +  +I +
Sbjct: 929 SLCLANKVDKAFRLFSEMSKKGVIPEMQTFCSLIKGLFRNSKISE 973



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 115/248 (46%), Gaps = 6/248 (2%)

Query: 179 SQNLFPMETIFYNVTM-KSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNL 237
           S++ FP     Y+  + +  +  RQ  L  ++ ++M+ N    + + Y+ +I    +   
Sbjct: 702 SEHGFPATLYTYSSLIDRYFKVKRQ-DLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGK 760

Query: 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
            DEA +  + M + G  P+ VTY+A++D + + GK+E  L L ER  + G  P+ + + V
Sbjct: 761 TDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGRIGKIETCLELLERMGSKGVAPNYVTYRV 820

Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
           L     ++G  D    +L+EMK      +   Y  ++E   K     L   L DE+ +  
Sbjct: 821 LIDHCCKNGALDVAHNLLEEMKQTHWPTHAAGYRKVIEGFNKEFIESLG--LLDEIGQDD 878

Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRE-NKWPMDF-ILYNTLLNMCADIGLVEE 415
             P       L+    KA+  + AL L E +   +   +D+   YN+L+        V++
Sbjct: 879 TAPFLSLYRLLVDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVDK 938

Query: 416 AERLFEDM 423
           A RLF +M
Sbjct: 939 AFRLFSEM 946



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 69/319 (21%), Positives = 124/319 (38%), Gaps = 43/319 (13%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           TY+ +I    + +  D A      M    L  D  T         K GK  E L+L E  
Sbjct: 237 TYNCLIQAFLKADCLDSASLVHREMSLANLRMDGFTLRCYAYSLCKVGKWREALTLME-- 294

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
               + PD + ++ L     E+  ++     L  M++    PN+V Y+TLL       + 
Sbjct: 295 -TENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQL 353

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
           G  + + + M+  G  P  K   +L+  Y  +     A +L ++M +      +++YN L
Sbjct: 354 GRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHTPGYVVYNIL 413

Query: 404 L-NMCAD-----IGLVEEAERLFEDM----------KLSDYCK----------------- 430
           + ++C D       L+E AE+ + +M           +S + +                 
Sbjct: 414 IGSICGDKDSLSCHLLELAEKAYSEMLATGVVLNKINVSSFTRCLCSAGKYEKAFSVIRE 473

Query: 431 -------PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483
                  PD  +Y+ +L    +   ++ A  LFEEM   G+  +V   T ++    KA  
Sbjct: 474 MIGQGFIPDTSTYSKVLGYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGL 533

Query: 484 IDDLVRVFGVSIDRGVKPD 502
           I+   + F    + G  P+
Sbjct: 534 IEQARKWFNEMREVGCTPN 552


>gi|30840221|emb|CAD61285.1| fertility restorer [Raphanus sativus]
 gi|32452380|emb|CAD80165.1| restorer of fertility pentatricopeptide repeat [Raphanus sativus]
 gi|32527602|gb|AAP86198.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
 gi|90903522|gb|ABE02309.1| Rf [Raphanus sativus]
 gi|90903524|gb|ABE02310.1| Rf [Raphanus sativus]
 gi|157931524|gb|ABW04886.1| PPR [Raphanus sativus]
          Length = 687

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 153/328 (46%), Gaps = 12/328 (3%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + YN  + +     +F   E+L +EM+   I  + ITYS++I    + N  D A   F
Sbjct: 324 DVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMF 383

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
             M   G  P+ +T++ ++D Y  + ++++ + L      +G   D   ++ L   F   
Sbjct: 384 YLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLV 443

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES--------- 356
           GD +    +LQEM S G+ P++V  +TLL+ +   GK   A  +F  M +S         
Sbjct: 444 GDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHP 503

Query: 357 --GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
             G+ PD +T   LI          +A EL+E M       D I Y+++++       ++
Sbjct: 504 FNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLD 563

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
           EA ++F+ M    +  P+  ++T ++N Y   G VD+ +ELF EM   G+  N +    L
Sbjct: 564 EATQMFDSMGSKSF-SPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITL 622

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           I    K   I+  + +F   I  GV PD
Sbjct: 623 ICGFRKVGNINGALDIFQEMISSGVYPD 650



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 158/335 (47%), Gaps = 39/335 (11%)

Query: 205 LIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAI- 263
           L+  L  +M   +I  D  +++ +I C   C+    A+  F ++ K GL PD VT++ + 
Sbjct: 97  LVISLYQKMERKQIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLL 156

Query: 264 ------------LDVY----------------------AKSGKVEEVLSLYERGVASGWK 289
                       LD +                       + G++ E ++L +R +  G +
Sbjct: 157 HGLCVEDRVSEALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQ 216

Query: 290 PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG-VQPNLVVYNTLLEAMGKAGKPGLARS 348
           P  I +  +     + GD      +L++M+ +  + PN+V+Y+ +++++ K G+   A++
Sbjct: 217 PTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQN 276

Query: 349 LFDEMVESGLTPDEKTLTALIKIY-GKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
           LF EM E G+ PD  T  ++I  +    RW+ DA +L + M E K   D + YN L+N  
Sbjct: 277 LFTEMQEKGIFPDLFTYNSMIVGFCSSGRWS-DAEQLLQEMLERKISPDVVTYNALINAF 335

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
              G   EAE L+++M L     P+  +Y++M++ +     +D A  +F  M+  G + N
Sbjct: 336 VKEGKFFEAEELYDEM-LPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPN 394

Query: 468 VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           ++    LI     A+RIDD + +     + G+  D
Sbjct: 395 LITFNTLIDGYCGAKRIDDGMELLHEMTETGLVAD 429



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 91/377 (24%), Positives = 167/377 (44%), Gaps = 15/377 (3%)

Query: 140 AFLRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKS----QNLFPMETIFYNVTMK 195
           A L  + E   QPT+     I++ +     +    N ++      ++ P   + Y+  + 
Sbjct: 205 ALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIP-NVVIYSAIID 263

Query: 196 SLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMP 255
           SL    +    + L  EM    I  D  TY+++I        + +A +  + M +  + P
Sbjct: 264 SLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISP 323

Query: 256 DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVL 315
           D VTY+A+++ + K GK  E   LY+  +  G  P+ I +S +   F +    D   ++ 
Sbjct: 324 DVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMF 383

Query: 316 QEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA 375
             M + G  PNL+ +NTL++    A +      L  EM E+GL  D  T   LI  +   
Sbjct: 384 YLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLV 443

Query: 376 RWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS--------- 426
                AL+L + M  +    D +  +TLL+   D G +++A  +F+ M+ S         
Sbjct: 444 GDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHP 503

Query: 427 -DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
            +  +PD  +Y  +++   + G    A EL+EEM   G+  + +  + +I  L K  R+D
Sbjct: 504 FNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLD 563

Query: 486 DLVRVFGVSIDRGVKPD 502
           +  ++F     +   P+
Sbjct: 564 EATQMFDSMGSKSFSPN 580



 Score =  103 bits (256), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 150/324 (46%), Gaps = 7/324 (2%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTII--T 230
           FF+ +      P    F  +     R GR  + +  L + M+ + ++   ITY TI+   
Sbjct: 171 FFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAV-ALLDRMMEDGLQPTQITYGTIVDGM 229

Query: 231 CAKRCNLFDEAIEWFERMYKTG-LMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWK 289
           C K   +   A+    +M +   ++P+ V YSAI+D   K G+  +  +L+      G  
Sbjct: 230 CKKGDTV--SALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIF 287

Query: 290 PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSL 349
           PD   ++ +   F  SG +     +LQEM    + P++V YN L+ A  K GK   A  L
Sbjct: 288 PDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEEL 347

Query: 350 FDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCAD 409
           +DEM+  G+ P+  T +++I  + K      A  ++  M       + I +NTL++    
Sbjct: 348 YDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCG 407

Query: 410 IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVM 469
              +++   L  +M  +     D  +Y  +++ +   G+++ A++L +EM   G+  +++
Sbjct: 408 AKRIDDGMELLHEMTETGLV-ADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIV 466

Query: 470 GCTCLIQCLGKARRIDDLVRVFGV 493
            C  L+  L    ++ D + +F V
Sbjct: 467 TCDTLLDGLCDNGKLKDALEMFKV 490



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 90/183 (49%), Gaps = 5/183 (2%)

Query: 216 NEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEE 275
           N +E D  TY+ +I+       F EA E +E M   G++PD +TYS+++D   K  +++E
Sbjct: 505 NGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDE 564

Query: 276 VLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLE 335
              +++   +  + P+ + F+ L   + ++G  D    +  EM   G+  N + Y TL+ 
Sbjct: 565 ATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIC 624

Query: 336 AMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN-KWP 394
              K G    A  +F EM+ SG+ PD  T+  ++       W+K+ L+    M E  +  
Sbjct: 625 GFRKVGNINGALDIFQEMISSGVYPDTITIRNML----TGLWSKEELKRAVAMLEKLQMS 680

Query: 395 MDF 397
           MD 
Sbjct: 681 MDL 683



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 60/265 (22%), Positives = 117/265 (44%)

Query: 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
            ++AI+ F  M ++  +P  V +  ++ V  +  + + V+SLY++      + D  +F++
Sbjct: 60  LEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNI 119

Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
           L K F              ++  LG+ P++V + TLL  +    +   A   F +M E+ 
Sbjct: 120 LIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETT 179

Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417
             P+  T T L+    +     +A+ L +RM E+      I Y T+++     G    A 
Sbjct: 180 CRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSAL 239

Query: 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
            L   M+   +  P+   Y+A+++     G   +A  LF EM E G+  ++     +I  
Sbjct: 240 NLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVG 299

Query: 478 LGKARRIDDLVRVFGVSIDRGVKPD 502
              + R  D  ++    ++R + PD
Sbjct: 300 FCSSGRWSDAEQLLQEMLERKISPD 324



 Score = 69.7 bits (169), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 74/148 (50%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN+ +  L    +F   E+L  EM    I  D ITYS++I    + +  DEA + F+ M 
Sbjct: 514 YNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMG 573

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
                P+ VT++ +++ Y K+G+V++ L L+      G   + I +  L   F + G+ +
Sbjct: 574 SKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNIN 633

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
           G   + QEM S GV P+ +    +L  +
Sbjct: 634 GALDIFQEMISSGVYPDTITIRNMLTGL 661



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 103/255 (40%), Gaps = 17/255 (6%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           +T  YN  +              L  EM+S+ +  D +T  T++          +A+E F
Sbjct: 429 DTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMF 488

Query: 246 ERMYKT-----------GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIA 294
           + M K+           G+ PD  TY+ ++      GK  E   LYE     G  PD I 
Sbjct: 489 KVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTIT 548

Query: 295 FSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMV 354
           +S +     +    D    +   M S    PN+V + TL+    KAG+      LF EM 
Sbjct: 549 YSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMG 608

Query: 355 ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
             G+  +  T   LI  + K      AL++++ M  +    D I   T+ NM   +   E
Sbjct: 609 RRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTI---TIRNMLTGLWSKE 665

Query: 415 EAER---LFEDMKLS 426
           E +R   + E +++S
Sbjct: 666 ELKRAVAMLEKLQMS 680


>gi|302794977|ref|XP_002979252.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
 gi|300153020|gb|EFJ19660.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
          Length = 702

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 161/339 (47%), Gaps = 8/339 (2%)

Query: 187 TIFYNVTMKSL----RFGRQFQLIEQLANEM-VSNEIELDNITYSTIITCAKRCNLFDEA 241
            I YN  +  L    R     +L + +      S+  E D I+YST+I    +    D+A
Sbjct: 180 VITYNTVVNGLCKANRIDEALELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKA 239

Query: 242 IEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKM 301
            E+F+RM   G  P+ VTYS+++D   K  +  E L L       G+  + I F+ +   
Sbjct: 240 YEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRPSECLELLLHMKEKGFGINIIDFNAMLHA 299

Query: 302 FGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD 361
             ++ + +      + +   G +PN+V YN  +  + KAG+   A  +  EMVES +TPD
Sbjct: 300 LWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGRVDEAYRILLEMVESKVTPD 359

Query: 362 EKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFE 421
             T +++I  + KA     A +++ RM  ++     + + TLL+  ++     EA R+ E
Sbjct: 360 VITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHE 419

Query: 422 DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
           DM  + +  P   +Y  +++      +V++A+E++ +M       +      LIQCL +A
Sbjct: 420 DMVNAGFI-PGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDCNTYAPLIQCLCRA 478

Query: 482 RRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSE 520
           RR+D+      V     V P+  +C  L+ V  LC+  E
Sbjct: 479 RRVDEAKEFLDVMEADNVVPNGAICHALVEV--LCKQGE 515



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 104/452 (23%), Positives = 197/452 (43%), Gaps = 16/452 (3%)

Query: 153 TRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANE 212
           T E A  +L  ++    ++ FF W  ++  F        V + +    ++ +   +L  E
Sbjct: 42  TPEVAGRVLQQVEDPDVAWTFFQWAGNKPGFQHNAYTCAVLLNAFVKAKRHEEAHRLLKE 101

Query: 213 MVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK 272
            +      + I Y+T+I    +    D+A E  + M + G+  D + +S ++    + G+
Sbjct: 102 ELEPLCFPNEIMYTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGR 161

Query: 273 VEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMK-----SLGVQPNL 327
           ++E L  + + +     P+ I ++ +     ++   D    +  +M+     S G +P++
Sbjct: 162 IDEALEQF-KSMGEECSPNVITYNTVVNGLCKANRIDEALELFDDMEKRYEASHGCEPDV 220

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
           + Y+T+++A+ KA +   A   F  M   G  P+  T ++LI    K     + LEL   
Sbjct: 221 ISYSTVIDALCKAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRPSECLELLLH 280

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           M+E  + ++ I +N +L+        E+A + FE + L    KP+  +Y   ++     G
Sbjct: 281 MKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERL-LKSGKKPNVVTYNVAVHGLCKAG 339

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCG 507
            VD A  +  EM E  V  +V+  + +I    KA R+D    VF   +     P      
Sbjct: 340 RVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFM 399

Query: 508 CLLSVVSLCETSEDVGKVITCLQQAN--PKLVAFLNLIEDNSTGFENIKEEFRNVIKDTE 565
            LL   S  + S +  +V   +  A   P L  + N++ D   G +++ E    +    +
Sbjct: 400 TLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTY-NVLMDCVCGADSV-ESALEIYHKMK 457

Query: 566 VDARRPFCNC---LID-ICRNRNLNERAHELL 593
              R+P CN    LI  +CR R ++E A E L
Sbjct: 458 RKKRQPDCNTYAPLIQCLCRARRVDE-AKEFL 488



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 87/382 (22%), Positives = 163/382 (42%), Gaps = 40/382 (10%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           K+Y +F  +++    P    + ++     +  R  + +E L + M      ++ I ++ +
Sbjct: 238 KAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRPSECLELLLH-MKEKGFGINIIDFNAM 296

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
           +    + +  ++A ++FER+ K+G  P+ VTY+  +    K+G+V+E   +    V S  
Sbjct: 297 LHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGRVDEAYRILLEMVESKV 356

Query: 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348
            PD I +S +   F ++G  D    V   M      P+ V + TLL    +  K   A  
Sbjct: 357 TPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFR 416

Query: 349 LFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCA 408
           + ++MV +G  P  +T   L+     A   + ALE++ +M+  K   D   Y  L+    
Sbjct: 417 VHEDMVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDCNTYAPLIQCLC 476

Query: 409 DIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG----- 463
               V+EA+  F D+  +D   P+     A++ +    G VD A  + + + E+G     
Sbjct: 477 RARRVDEAKE-FLDVMEADNVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEVGCQPLG 535

Query: 464 ----------------------------VAINVMGCTCLIQCLGKARRIDDLVRVFGVSI 495
                                       VA       C+ + + KA + D+ V V    +
Sbjct: 536 ETFKILVEELYLRKKWEAASKLLRSPGFVADAATYSLCVAE-ICKAGKPDEAVEVIEQMV 594

Query: 496 DRGVKPDDRLCGCLLSVV-SLC 516
            +GV+PD+   G  ++V+ SLC
Sbjct: 595 LKGVRPDE---GTYVAVLRSLC 613



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 87/370 (23%), Positives = 150/370 (40%), Gaps = 42/370 (11%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           +K+  FF  +      P   + YNV +  L    +     ++  EMV +++  D ITYS+
Sbjct: 307 EKACQFFERLLKSGKKP-NVVTYNVAVHGLCKAGRVDEAYRILLEMVESKVTPDVITYSS 365

Query: 228 IITCAKRCNLFDEAIEWFERMY-----------------------------------KTG 252
           II    +    D+A + F RM                                      G
Sbjct: 366 IIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAG 425

Query: 253 LMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIR 312
            +P   TY+ ++D    +  VE  L +Y +      +PD   ++ L +    +   D  +
Sbjct: 426 FIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDCNTYAPLIQCLCRARRVDEAK 485

Query: 313 YVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK-I 371
             L  M++  V PN  + + L+E + K G+   A S+ D +VE G  P  +T   L++ +
Sbjct: 486 EFLDVMEADNVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEVGCQPLGETFKILVEEL 545

Query: 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
           Y + +W   +    + +R   +  D   Y+  +      G  +EA  + E M L    +P
Sbjct: 546 YLRKKWEAAS----KLLRSPGFVADAATYSLCVAEICKAGKPDEAVEVIEQMVLKGV-RP 600

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           D  +Y A+L        V++AI  FE+M+  G A  ++  T LI     A   D+  R+F
Sbjct: 601 DEGTYVAVLRSLCGLDRVESAIAEFEKMASRGCAPGLVTYTLLIGEACSADMADEAFRIF 660

Query: 492 GVSIDRGVKP 501
              +  G  P
Sbjct: 661 EAMVAAGFTP 670



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 69/297 (23%), Positives = 132/297 (44%), Gaps = 8/297 (2%)

Query: 135 DNTEEAFLRAITE--IPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFP-METIFYN 191
           D  ++ F R +    IPH  T    L   +  K  ++++     + +    P ++T  YN
Sbjct: 377 DKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQT--YN 434

Query: 192 VTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKT 251
           V M  +      +   ++ ++M   + + D  TY+ +I C  R    DEA E+ + M   
Sbjct: 435 VLMDCVCGADSVESALEIYHKMKRKKRQPDCNTYAPLIQCLCRARRVDEAKEFLDVMEAD 494

Query: 252 GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGI 311
            ++P+     A+++V  K G+V+E  S+ +  V  G +P    F +L +       ++  
Sbjct: 495 NVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEVGCQPLGETFKILVEELYLRKKWEAA 554

Query: 312 RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371
             +L   +S G   +   Y+  +  + KAGKP  A  + ++MV  G+ PDE T  A+++ 
Sbjct: 555 SKLL---RSPGFVADAATYSLCVAEICKAGKPDEAVEVIEQMVLKGVRPDEGTYVAVLRS 611

Query: 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428
                  + A+  +E+M         + Y  L+       + +EA R+FE M  + +
Sbjct: 612 LCGLDRVESAIAEFEKMASRGCAPGLVTYTLLIGEACSADMADEAFRIFEAMVAAGF 668



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 8/121 (6%)

Query: 252 GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAF-SVLGKMFGESGDYDG 310
           G + D  TYS  +    K+GK +E + + E+ V  G +PD   + +VL  + G     D 
Sbjct: 562 GFVADAATYSLCVAEICKAGKPDEAVEVIEQMVLKGVRPDEGTYVAVLRSLCG----LDR 617

Query: 311 IRYVLQE---MKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
           +   + E   M S G  P LV Y  L+     A     A  +F+ MV +G TP  +T+  
Sbjct: 618 VESAIAEFEKMASRGCAPGLVTYTLLIGEACSADMADEAFRIFEAMVAAGFTPQAQTMRT 677

Query: 368 L 368
           L
Sbjct: 678 L 678



 Score = 44.3 bits (103), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 34/170 (20%), Positives = 68/170 (40%), Gaps = 1/170 (0%)

Query: 140 AFLRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRF 199
           + L  + E+  QP  E   +++  L   +K       ++S         +     +  + 
Sbjct: 521 SVLDNVVEVGCQPLGETFKILVEELYLRKKWEAASKLLRSPGFVADAATYSLCVAEICKA 580

Query: 200 GRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVT 259
           G+  + +E +  +MV   +  D  TY  ++      +  + AI  FE+M   G  P  VT
Sbjct: 581 GKPDEAVEVI-EQMVLKGVRPDEGTYVAVLRSLCGLDRVESAIAEFEKMASRGCAPGLVT 639

Query: 260 YSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
           Y+ ++     +   +E   ++E  VA+G+ P       L     ++G  D
Sbjct: 640 YTLLIGEACSADMADEAFRIFEAMVAAGFTPQAQTMRTLSSCLRDAGYQD 689


>gi|218184398|gb|EEC66825.1| hypothetical protein OsI_33257 [Oryza sativa Indica Group]
          Length = 948

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 141/293 (48%), Gaps = 1/293 (0%)

Query: 210 ANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAK 269
           A  M+    EL+ + ++T+I          EA E +E M   G  PD  TYS ++    K
Sbjct: 299 ARAMLGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCK 358

Query: 270 SGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVV 329
            G++   + L       G+ P+ + ++++   F ++G +D  R +L+EM + G+  N   
Sbjct: 359 LGRISSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQG 418

Query: 330 YNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMR 389
           YN ++ A+ K G+   A  L  EM   G  PD  +   +I         ++A  ++E + 
Sbjct: 419 YNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLL 478

Query: 390 ENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNV 449
           E     + I YNT+++     G  ++A RL ++M L   C  D  SY  ++      GNV
Sbjct: 479 EEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHG-CSLDVVSYNGLIKAMCKDGNV 537

Query: 450 DNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           D ++ L EEM+E G+  N +    LI  L K RR+ D + +    +++G+ PD
Sbjct: 538 DRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPD 590



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/274 (24%), Positives = 122/274 (44%), Gaps = 1/274 (0%)

Query: 183 FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
           F    + Y + + S      +     L  EM +  + L++  Y+ +I    +    DEA+
Sbjct: 377 FAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAM 436

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
              + M   G  PD  +Y+ I+     + ++EE   ++E  +  G   + I ++ +    
Sbjct: 437 GLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHAL 496

Query: 303 GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
              G +     + +EM   G   ++V YN L++AM K G    +  L +EM E G+ P+ 
Sbjct: 497 LRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNN 556

Query: 363 KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED 422
            +   LI    K R  +DALEL ++M       D + YNTL+N    +G +  A  L E 
Sbjct: 557 VSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEK 616

Query: 423 MKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELF 456
           +  ++   PD  +Y  +++ +     +D+A  L 
Sbjct: 617 LH-NENVHPDIITYNILISWHCKVRLLDDAAMLL 649



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/283 (24%), Positives = 125/283 (44%), Gaps = 4/283 (1%)

Query: 141 FLRAITEIPHQPTRENALLILNSL---KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSL 197
            LR + +    P      ++L+S      W  +      + ++ L  + +  YN  + +L
Sbjct: 368 LLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGL-TLNSQGYNGMIYAL 426

Query: 198 RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDE 257
               +      L  EM S     D  +Y+TII         +EA   FE + + G++ + 
Sbjct: 427 CKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANG 486

Query: 258 VTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQE 317
           +TY+ I+    + G+ ++ + L +  +  G   D ++++ L K   + G+ D    +L+E
Sbjct: 487 ITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEE 546

Query: 318 MKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARW 377
           M   G++PN V YN L+  + K  +   A  L  +M+  GL PD  T   LI    K  W
Sbjct: 547 MAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGW 606

Query: 378 AKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLF 420
              AL L E++       D I YN L++    + L+++A  L 
Sbjct: 607 MHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDAAMLL 649



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 116/273 (42%), Gaps = 41/273 (15%)

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG-WKPDPIAFSVLGKMFGESGDY 308
           + G+ P   +Y+ +L V A++    + L+LY R V      P    F V  +     G  
Sbjct: 132 RFGVQPSFRSYNVVLSVLARADCHADALALYRRMVHRDRVPPTTFTFGVAARALCRLGRA 191

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEA-------------------MGKA--------- 340
           +    +L+ M   G  P+ V+Y T++ A                   MG A         
Sbjct: 192 NEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDV 251

Query: 341 --GKPGLAR-----SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKW 393
             G  GL R      L D M+  G  P   T   L++   + R A +A  +  R+ E   
Sbjct: 252 VRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPE--- 308

Query: 394 PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAI 453
            ++ +L+NT++  C   G + EA  L+E M L   C+PD ++Y+ +++     G + +A+
Sbjct: 309 -LNVVLFNTVIGGCLAEGKLAEATELYETMGLKG-CQPDAHTYSILMHGLCKLGRISSAV 366

Query: 454 ELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
            L  EM + G A NV+  T ++    K    DD
Sbjct: 367 RLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDD 399



 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 69/298 (23%), Positives = 131/298 (43%), Gaps = 3/298 (1%)

Query: 190 YNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERM 248
           Y++ M  L + GR    + +L  EM       + +TY+ ++    +  ++D+     E M
Sbjct: 349 YSILMHGLCKLGRISSAV-RLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEM 407

Query: 249 YKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY 308
              GL  +   Y+ ++    K G+++E + L +   + G  PD  +++ +      +   
Sbjct: 408 SAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQM 467

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
           +   ++ + +   GV  N + YNT++ A+ + G+   A  L  EM+  G + D  +   L
Sbjct: 468 EEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGL 527

Query: 369 IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428
           IK   K      +L L E M E     + + YN L++       V +A  L + M L+  
Sbjct: 528 IKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQM-LNQG 586

Query: 429 CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
             PD  +Y  ++N     G +  A+ L E++    V  +++    LI    K R +DD
Sbjct: 587 LAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDD 644



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 80/335 (23%), Positives = 132/335 (39%), Gaps = 14/335 (4%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVS-NEIELDNITYSTIITCAKRCNLFDEAIEWFERM 248
           YNV +  L           L   MV  + +     T+        R    +EA+     M
Sbjct: 142 YNVVLSVLARADCHADALALYRRMVHRDRVPPTTFTFGVAARALCRLGRANEALALLRGM 201

Query: 249 YKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAF-SVLGKMFGESGD 307
            + G +PD V Y  ++      G V E  +L    +  G   D   F  V+  M G    
Sbjct: 202 ARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRV 261

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
            +  R V   M + G  P ++ Y  LL+ + +  +   AR++       G  P+   +  
Sbjct: 262 REAARLV-DRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAML------GRVPELNVVLF 314

Query: 368 LIKIYGKARWAK--DALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
              I G     K  +A EL+E M       D   Y+ L++    +G +  A RL  +M+ 
Sbjct: 315 NTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRISSAVRLLREMEK 374

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
             +  P+  +YT +L+ +   G  D+   L EEMS  G+ +N  G   +I  L K  R+D
Sbjct: 375 KGF-APNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMD 433

Query: 486 DLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSE 520
           + + +      +G  PD  +C     +  LC   +
Sbjct: 434 EAMGLIQEMRSQGCNPD--ICSYNTIIYHLCNNEQ 466



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 102/220 (46%), Gaps = 3/220 (1%)

Query: 177 IKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCN 236
           ++SQ   P +   YN  +  L    Q +  E +   ++   +  + ITY+TII    R  
Sbjct: 442 MRSQGCNP-DICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDG 500

Query: 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS 296
            + +A+   + M   G   D V+Y+ ++    K G V+  L L E     G KP+ ++++
Sbjct: 501 RWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYN 560

Query: 297 VL-GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVE 355
           +L  ++  E    D +  + ++M + G+ P++V YNTL+  + K G    A +L +++  
Sbjct: 561 ILISELCKERRVRDALE-LSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHN 619

Query: 356 SGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPM 395
             + PD  T   LI  + K R   DA  L  R      P+
Sbjct: 620 ENVHPDIITYNILISWHCKVRLLDDAAMLLNRAMAAVCPV 659



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 85/203 (41%), Gaps = 2/203 (0%)

Query: 319 KSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG-LTPDEKTLTALIKIYGKARW 377
           +  GVQP+   YN +L  + +A     A +L+  MV    + P   T     +   +   
Sbjct: 131 RRFGVQPSFRSYNVVLSVLARADCHADALALYRRMVHRDRVPPTTFTFGVAARALCRLGR 190

Query: 378 AKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYT 437
           A +AL L   M  +    D +LY T+++   D G V EA  L  +M L   C  D  ++ 
Sbjct: 191 ANEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMG-CAADVNTFD 249

Query: 438 AMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDR 497
            ++      G V  A  L + M   G    VM    L+Q L + R+ D+   + G   + 
Sbjct: 250 DVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPEL 309

Query: 498 GVKPDDRLCGCLLSVVSLCETSE 520
            V   + + G  L+   L E +E
Sbjct: 310 NVVLFNTVIGGCLAEGKLAEATE 332


>gi|30840327|emb|CAD61286.1| fertility restorer homologue [Raphanus sativus]
 gi|134302843|gb|ABO70665.1| restorer-of-fertility [Raphanus sativus]
 gi|157931526|gb|ABW04887.1| PPR [Raphanus sativus]
 gi|194295008|gb|ABO70666.2| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 153/328 (46%), Gaps = 12/328 (3%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + YN  + +     +F   E+L +EM+   I  + ITYS++I    + N  D A   F
Sbjct: 324 DVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMF 383

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
             M   G  P+ +T++ ++D Y  + ++++ + L      +G   D   ++ L   F   
Sbjct: 384 YLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLV 443

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES--------- 356
           GD +    +LQEM S G+ P++V  +TLL+ +   GK   A  +F  M +S         
Sbjct: 444 GDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHP 503

Query: 357 --GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
             G+ PD +T   LI          +A EL+E M       D I Y+++++       ++
Sbjct: 504 FNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLD 563

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
           EA ++F+ M    +  P+  ++T ++N Y   G VD+ +ELF EM   G+  N +    L
Sbjct: 564 EATQMFDSMGSKSF-SPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITL 622

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           I    K   I+  + +F   I  GV PD
Sbjct: 623 ICGFRKVGNINGALDIFQEMISSGVYPD 650



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 157/335 (46%), Gaps = 39/335 (11%)

Query: 205 LIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAIL 264
           L+  L  +M   +I  D  +++ +I C   C+    A+  F ++ K GL PD VT++ +L
Sbjct: 97  LVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLL 156

Query: 265 -----------------------------------DVYAKSGKVEEVLSLYERGVASGWK 289
                                              +   + G++ E ++L +R +  G +
Sbjct: 157 HGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQ 216

Query: 290 PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG-VQPNLVVYNTLLEAMGKAGKPGLARS 348
           P  I +  +     + GD      +L++M+ +  + PN+V+Y+ +++++ K G+   A++
Sbjct: 217 PTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQN 276

Query: 349 LFDEMVESGLTPDEKTLTALIKIY-GKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
           LF EM E G+ PD  T  ++I  +    RW+ DA +L + M E K   D + YN L+N  
Sbjct: 277 LFTEMQEKGIFPDLFTYNSMIVGFCSSGRWS-DAEQLLQEMLERKISPDVVTYNALINAF 335

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
              G   EAE L+++M L     P+  +Y++M++ +     +D A  +F  M+  G + N
Sbjct: 336 VKEGKFFEAEELYDEM-LPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPN 394

Query: 468 VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           ++    LI     A+RIDD + +     + G+  D
Sbjct: 395 LITFNTLIDGYCGAKRIDDGMELLHEMTETGLVAD 429



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 148/326 (45%), Gaps = 10/326 (3%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
            + Y+  + SL    +    + L  EM    I  D  TY+++I        + +A +  +
Sbjct: 255 VVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQ 314

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
            M +  + PD VTY+A+++ + K GK  E   LY+  +  G  P+ I +S +   F +  
Sbjct: 315 EMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQN 374

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
             D   ++   M + G  PNL+ +NTL++    A +      L  EM E+GL  D  T  
Sbjct: 375 RLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYN 434

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
            LI  +        AL+L + M  +    D +  +TLL+   D G +++A  +F+ M+ S
Sbjct: 435 TLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKS 494

Query: 427 ----------DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
                     +  +PD  +Y  +++   + G    A EL+EEM   G+  + +  + +I 
Sbjct: 495 KKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMID 554

Query: 477 CLGKARRIDDLVRVFGVSIDRGVKPD 502
            L K  R+D+  ++F     +   P+
Sbjct: 555 GLCKQSRLDEATQMFDSMGSKSFSPN 580



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 85/368 (23%), Positives = 163/368 (44%), Gaps = 7/368 (1%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           F  I    L P + + +N  +  L    +      L ++M       + +T++T++    
Sbjct: 137 FGKITKLGLHP-DVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLC 195

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER-GVASGWKPDP 292
           R     EA+   +RM + GL P ++TY  I+D   K G     L+L  +    S   P+ 
Sbjct: 196 REGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNV 255

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           + +S +     + G +   + +  EM+  G+ P+L  YN+++     +G+   A  L  E
Sbjct: 256 VIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQE 315

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M+E  ++PD  T  ALI  + K     +A EL++ M       + I Y+++++       
Sbjct: 316 MLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNR 375

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
           ++ AE +F  M  +  C P+  ++  +++ Y     +D+ +EL  EM+E G+  +     
Sbjct: 376 LDAAEHMFYLMA-TKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYN 434

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETS--EDVGKVITCLQ 530
            LI        ++  + +    I  G+ PD   C  LL    LC+    +D  ++   +Q
Sbjct: 435 TLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLD--GLCDNGKLKDALEMFKVMQ 492

Query: 531 QANPKLVA 538
           ++   L A
Sbjct: 493 KSKKDLDA 500



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 120/265 (45%)

Query: 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
            ++AI+ F  M ++  +P  V +  ++ V  +  + + V+SLY++      + D  +F++
Sbjct: 60  LEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTI 119

Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
           L K F              ++  LG+ P++V +NTLL  +    +   A +LF +M E+ 
Sbjct: 120 LIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETT 179

Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417
             P+  T T L+    +     +A+ L +RM E+      I Y T+++     G    A 
Sbjct: 180 CRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSAL 239

Query: 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
            L   M+   +  P+   Y+A+++     G   +A  LF EM E G+  ++     +I  
Sbjct: 240 NLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVG 299

Query: 478 LGKARRIDDLVRVFGVSIDRGVKPD 502
              + R  D  ++    ++R + PD
Sbjct: 300 FCSSGRWSDAEQLLQEMLERKISPD 324



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 90/183 (49%), Gaps = 5/183 (2%)

Query: 216 NEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEE 275
           N +E D  TY+ +I+       F EA E +E M   G++PD +TYS+++D   K  +++E
Sbjct: 505 NGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDE 564

Query: 276 VLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLE 335
              +++   +  + P+ + F+ L   + ++G  D    +  EM   G+  N + Y TL+ 
Sbjct: 565 ATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIC 624

Query: 336 AMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN-KWP 394
              K G    A  +F EM+ SG+ PD  T+  ++       W+K+ L+    M E  +  
Sbjct: 625 GFRKVGNINGALDIFQEMISSGVYPDTITIRNML----TGLWSKEELKRAVAMLEKLQMS 680

Query: 395 MDF 397
           MD 
Sbjct: 681 MDL 683



 Score = 69.7 bits (169), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 74/148 (50%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN+ +  L    +F   E+L  EM    I  D ITYS++I    + +  DEA + F+ M 
Sbjct: 514 YNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMG 573

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
                P+ VT++ +++ Y K+G+V++ L L+      G   + I +  L   F + G+ +
Sbjct: 574 SKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNIN 633

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
           G   + QEM S GV P+ +    +L  +
Sbjct: 634 GALDIFQEMISSGVYPDTITIRNMLTGL 661



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 103/255 (40%), Gaps = 17/255 (6%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           +T  YN  +              L  EM+S+ +  D +T  T++          +A+E F
Sbjct: 429 DTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMF 488

Query: 246 ERMYKT-----------GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIA 294
           + M K+           G+ PD  TY+ ++      GK  E   LYE     G  PD I 
Sbjct: 489 KVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTIT 548

Query: 295 FSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMV 354
           +S +     +    D    +   M S    PN+V + TL+    KAG+      LF EM 
Sbjct: 549 YSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMG 608

Query: 355 ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
             G+  +  T   LI  + K      AL++++ M  +    D I   T+ NM   +   E
Sbjct: 609 RRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTI---TIRNMLTGLWSKE 665

Query: 415 EAER---LFEDMKLS 426
           E +R   + E +++S
Sbjct: 666 ELKRAVAMLEKLQMS 680


>gi|224111362|ref|XP_002315826.1| predicted protein [Populus trichocarpa]
 gi|222864866|gb|EEF01997.1| predicted protein [Populus trichocarpa]
          Length = 636

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 106/381 (27%), Positives = 176/381 (46%), Gaps = 14/381 (3%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ--LANEMVSNEIELDNITYSTIIT 230
            F  +K   L P + + YN  +    +G+   L E   L  EM     E D ITY+ +I 
Sbjct: 154 LFEQMKKMGLTP-DIVTYNTLIDG--YGKIGLLDESVCLFEEMKFMGCEPDVITYNALIN 210

Query: 231 CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
              +      A E+F  M    L P+ ++YS ++D   K G ++  +  +      G  P
Sbjct: 211 SFCKFKGMLRAFEFFREMKDKDLKPNVISYSTLIDALCKEGMMQMAIKFFVDMTRVGLLP 270

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
           +   +S L     ++G+      +  EM    V  N+V Y TLL+ + + G    A  LF
Sbjct: 271 NEFTYSSLIDANCKAGNLGEAFMLADEMLQEHVDLNIVTYTTLLDGLCEEGMMNEAEELF 330

Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL-NMCAD 409
             M ++G+TP+ +  TALI  + K R    A+EL+  MRE     D +L+ T++  +C++
Sbjct: 331 RAMGKAGVTPNLQAYTALIHGHIKVRSMDKAMELFNEMREKDIKPDILLWGTIVWGLCSE 390

Query: 410 IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVM 469
             L EE + +  +MK S     +   YT +++ Y   GN   AI L EEM +LG  + V+
Sbjct: 391 SKL-EECKIIMTEMKESGI-GANPVIYTTLMDAYFKAGNRTEAINLLEEMRDLGTEVTVV 448

Query: 470 GCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETS--EDVGKVIT 527
               LI  L K   + + +  FG   D  ++P+  +   L+    LC+ +   D  K+  
Sbjct: 449 TFCALIDGLCKRGLVQEAIYYFGRMPDHDLQPNVAVYTALID--GLCKNNCIGDAKKLFD 506

Query: 528 CLQQAN--PKLVAFLNLIEDN 546
            +Q  N  P  +A+  +I+ N
Sbjct: 507 EMQDKNMIPDKIAYTAMIDGN 527



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 87/346 (25%), Positives = 165/346 (47%), Gaps = 8/346 (2%)

Query: 168 QKSYFFFNWIKSQNLFPMETIF---YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNIT 224
           Q +  FF  +    L P E  +    +   K+   G  F L    A+EM+   ++L+ +T
Sbjct: 254 QMAIKFFVDMTRVGLLPNEFTYSSLIDANCKAGNLGEAFML----ADEMLQEHVDLNIVT 309

Query: 225 YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
           Y+T++       + +EA E F  M K G+ P+   Y+A++  + K   +++ + L+    
Sbjct: 310 YTTLLDGLCEEGMMNEAEELFRAMGKAGVTPNLQAYTALIHGHIKVRSMDKAMELFNEMR 369

Query: 285 ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344
               KPD + +  +          +  + ++ EMK  G+  N V+Y TL++A  KAG   
Sbjct: 370 EKDIKPDILLWGTIVWGLCSESKLEECKIIMTEMKESGIGANPVIYTTLMDAYFKAGNRT 429

Query: 345 LARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
            A +L +EM + G      T  ALI    K    ++A+  + RM ++    +  +Y  L+
Sbjct: 430 EAINLLEEMRDLGTEVTVVTFCALIDGLCKRGLVQEAIYYFGRMPDHDLQPNVAVYTALI 489

Query: 405 NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
           +       + +A++LF++M+  +   PD  +YTAM++     GN   A+ +  +M E+G+
Sbjct: 490 DGLCKNNCIGDAKKLFDEMQDKNMI-PDKIAYTAMIDGNLKHGNFQEALNMRNKMMEMGI 548

Query: 465 AINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
            +++   T L+  L +  ++    +     I +G+ PD+ LC  LL
Sbjct: 549 ELDLYAYTSLVWGLSQCGQVQQARKFLAEMIGKGIIPDETLCTRLL 594



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 107/420 (25%), Positives = 185/420 (44%), Gaps = 55/420 (13%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
            +  + +      + + A + F RM K  ++P   + +A L   +K+G+ +     +   
Sbjct: 64  VFDALFSVLVELGMLEAAGQCFLRMTKFRVLPKARSCNAFLHRLSKAGEGDLSRDFFRDM 123

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
           V +G  P    ++++     + GD    R + ++MK +G+ P++V YNTL++  GK G  
Sbjct: 124 VGAGIAPTVFTYNIMIGHVCKEGDMLTARSLFEQMKKMGLTPDIVTYNTLIDGYGKIGLL 183

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
             +  LF+EM   G  PD  T  ALI  + K +    A E +  M++     + I Y+TL
Sbjct: 184 DESVCLFEEMKFMGCEPDVITYNALINSFCKFKGMLRAFEFFREMKDKDLKPNVISYSTL 243

Query: 404 LNMCADIGLVEEAERLFEDMK--------------LSDYCKPDN---------------- 433
           ++     G+++ A + F DM               +   CK  N                
Sbjct: 244 IDALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSLIDANCKAGNLGEAFMLADEMLQEHV 303

Query: 434 ----YSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
                +YT +L+     G ++ A ELF  M + GV  N+   T LI    K R +D  + 
Sbjct: 304 DLNIVTYTTLLDGLCEEGMMNEAEELFRAMGKAGVTPNLQAYTALIHGHIKVRSMDKAME 363

Query: 490 VFGVSIDRGVKPDDRLCGCLLSVVSLCETS--EDVGKVITCLQQ----ANPKLVAFLNLI 543
           +F    ++ +KPD  L G +  V  LC  S  E+   ++T +++    ANP  V +  L+
Sbjct: 364 LFNEMREKDIKPDILLWGTI--VWGLCSESKLEECKIIMTEMKESGIGANP--VIYTTLM 419

Query: 544 E-----DNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTL 598
           +      N T   N+ EE R++   TEV     FC  +  +C+ R L + A  + Y G +
Sbjct: 420 DAYFKAGNRTEAINLLEEMRDL--GTEVTV-VTFCALIDGLCK-RGLVQEA--IYYFGRM 473



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/257 (27%), Positives = 120/257 (46%), Gaps = 1/257 (0%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           +L NEM   +I+ D + + TI+      +  +E       M ++G+  + V Y+ ++D Y
Sbjct: 363 ELFNEMREKDIKPDILLWGTIVWGLCSESKLEECKIIMTEMKESGIGANPVIYTTLMDAY 422

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            K+G   E ++L E     G +   + F  L     + G      Y    M    +QPN+
Sbjct: 423 FKAGNRTEAINLLEEMRDLGTEVTVVTFCALIDGLCKRGLVQEAIYYFGRMPDHDLQPNV 482

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
            VY  L++ + K    G A+ LFDEM +  + PD+   TA+I    K    ++AL +  +
Sbjct: 483 AVYTALIDGLCKNNCIGDAKKLFDEMQDKNMIPDKIAYTAMIDGNLKHGNFQEALNMRNK 542

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           M E    +D   Y +L+   +  G V++A +   +M +     PD    T +L  +   G
Sbjct: 543 MMEMGIELDLYAYTSLVWGLSQCGQVQQARKFLAEM-IGKGIIPDETLCTRLLRKHYELG 601

Query: 448 NVDNAIELFEEMSELGV 464
           N+D AIEL  E+ E G+
Sbjct: 602 NIDEAIELQNELVEKGL 618



 Score = 47.0 bits (110), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 28/119 (23%), Positives = 60/119 (50%), Gaps = 5/119 (4%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F+ ++ +N+ P +  +  +   +L+ G  FQ    + N+M+   IELD   Y++++   
Sbjct: 504 LFDEMQDKNMIPDKIAYTAMIDGNLKHG-NFQEALNMRNKMMEMGIELDLYAYTSLVWGL 562

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL----SLYERGVASG 287
            +C    +A ++   M   G++PDE   + +L  + + G ++E +     L E+G+  G
Sbjct: 563 SQCGQVQQARKFLAEMIGKGIIPDETLCTRLLRKHYELGNIDEAIELQNELVEKGLIHG 621


>gi|134302847|gb|ABO70667.1| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 153/328 (46%), Gaps = 12/328 (3%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + YN  + +     +F   E+L +EM+   I  + ITYS++I    + N  D A   F
Sbjct: 324 DVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMF 383

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
             M   G  P+ +T++ ++D Y  + ++++ + L      +G   D   ++ L   F   
Sbjct: 384 YLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLV 443

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES--------- 356
           GD +    +LQEM S G+ P++V  +TLL+ +   GK   A  +F  M +S         
Sbjct: 444 GDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHP 503

Query: 357 --GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
             G+ PD +T   LI          +A EL+E M       D I Y+++++       ++
Sbjct: 504 FNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLD 563

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
           EA ++F+ M    +  P+  ++T ++N Y   G VD+ +ELF EM   G+  N +    L
Sbjct: 564 EATQMFDSMGSKSF-SPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITL 622

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           I    K   I+  + +F   I  GV PD
Sbjct: 623 ICGFRKVGNINGALDIFQEMISSGVYPD 650



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 157/335 (46%), Gaps = 39/335 (11%)

Query: 205 LIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAIL 264
           L+  L  +M   +I  D  +++ +I C   C+    A+  F ++ K GL PD VT++ +L
Sbjct: 97  LVISLYQKMERKQIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLL 156

Query: 265 -----------------------------------DVYAKSGKVEEVLSLYERGVASGWK 289
                                              +   + G++ E ++L +R +  G +
Sbjct: 157 HGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQ 216

Query: 290 PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG-VQPNLVVYNTLLEAMGKAGKPGLARS 348
           P  I +  +     + GD      +L++M+ +  + PN+V+Y+ +++++ K G+   A++
Sbjct: 217 PTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQN 276

Query: 349 LFDEMVESGLTPDEKTLTALIKIY-GKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
           LF EM E G+ PD  T  ++I  +    RW+ DA +L + M E K   D + YN L+N  
Sbjct: 277 LFTEMQEKGIFPDLFTYNSMIVGFCSSGRWS-DAEQLLQEMLERKISPDVVTYNALINAF 335

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
              G   EAE L+++M L     P+  +Y++M++ +     +D A  +F  M+  G + N
Sbjct: 336 VKEGKFFEAEELYDEM-LPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPN 394

Query: 468 VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           ++    LI     A+RIDD + +     + G+  D
Sbjct: 395 LITFNTLIDGYCGAKRIDDGMELLHEMTETGLVAD 429



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 148/326 (45%), Gaps = 10/326 (3%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
            + Y+  + SL    +    + L  EM    I  D  TY+++I        + +A +  +
Sbjct: 255 VVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQ 314

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
            M +  + PD VTY+A+++ + K GK  E   LY+  +  G  P+ I +S +   F +  
Sbjct: 315 EMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQN 374

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
             D   ++   M + G  PNL+ +NTL++    A +      L  EM E+GL  D  T  
Sbjct: 375 RLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYN 434

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
            LI  +        AL+L + M  +    D +  +TLL+   D G +++A  +F+ M+ S
Sbjct: 435 TLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKS 494

Query: 427 ----------DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
                     +  +PD  +Y  +++   + G    A EL+EEM   G+  + +  + +I 
Sbjct: 495 KKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMID 554

Query: 477 CLGKARRIDDLVRVFGVSIDRGVKPD 502
            L K  R+D+  ++F     +   P+
Sbjct: 555 GLCKQSRLDEATQMFDSMGSKSFSPN 580



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 150/309 (48%), Gaps = 10/309 (3%)

Query: 192 VTMKSLRFG--RQFQLIEQLA--NEMVSNEIELDNITYSTII--TCAKRCNLFDEAIEWF 245
           VT  +L  G  R+ +++E +A  + M+ + ++   ITY TI+   C K   +   A+   
Sbjct: 185 VTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTV--SALNLL 242

Query: 246 ERMYKTG-LMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
            +M +   ++P+ V YSAI+D   K G+  +  +L+      G  PD   ++ +   F  
Sbjct: 243 RKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCS 302

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
           SG +     +LQEM    + P++V YN L+ A  K GK   A  L+DEM+  G+ P+  T
Sbjct: 303 SGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTIT 362

Query: 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
            +++I  + K      A  ++  M       + I +NTL++       +++   L  +M 
Sbjct: 363 YSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMT 422

Query: 425 LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484
            +     D  +Y  +++ +   G+++ A++L +EM   G+  +++ C  L+  L    ++
Sbjct: 423 ETGLV-ADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKL 481

Query: 485 DDLVRVFGV 493
            D + +F V
Sbjct: 482 KDALEMFKV 490



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 90/183 (49%), Gaps = 5/183 (2%)

Query: 216 NEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEE 275
           N +E D  TY+ +I+       F EA E +E M   G++PD +TYS+++D   K  +++E
Sbjct: 505 NGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDE 564

Query: 276 VLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLE 335
              +++   +  + P+ + F+ L   + ++G  D    +  EM   G+  N + Y TL+ 
Sbjct: 565 ATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIC 624

Query: 336 AMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN-KWP 394
              K G    A  +F EM+ SG+ PD  T+  ++       W+K+ L+    M E  +  
Sbjct: 625 GFRKVGNINGALDIFQEMISSGVYPDTITIRNML----TGLWSKEELKRAVAMLEKLQMS 680

Query: 395 MDF 397
           MD 
Sbjct: 681 MDL 683



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/265 (23%), Positives = 119/265 (44%)

Query: 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
            ++AI+ F  M ++  +P  V +  ++ V  +  + + V+SLY++      + D  +F++
Sbjct: 60  LEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNI 119

Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
           L K F              ++  LG+ P++V + TLL  +    +   A +LF +M E+ 
Sbjct: 120 LIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALNLFHQMFETT 179

Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417
             P+  T T L+    +     +A+ L +RM E+      I Y T+++     G    A 
Sbjct: 180 CRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSAL 239

Query: 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
            L   M+   +  P+   Y+A+++     G   +A  LF EM E G+  ++     +I  
Sbjct: 240 NLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVG 299

Query: 478 LGKARRIDDLVRVFGVSIDRGVKPD 502
              + R  D  ++    ++R + PD
Sbjct: 300 FCSSGRWSDAEQLLQEMLERKISPD 324



 Score = 69.7 bits (169), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 74/148 (50%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN+ +  L    +F   E+L  EM    I  D ITYS++I    + +  DEA + F+ M 
Sbjct: 514 YNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMG 573

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
                P+ VT++ +++ Y K+G+V++ L L+      G   + I +  L   F + G+ +
Sbjct: 574 SKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNIN 633

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
           G   + QEM S GV P+ +    +L  +
Sbjct: 634 GALDIFQEMISSGVYPDTITIRNMLTGL 661



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 103/255 (40%), Gaps = 17/255 (6%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           +T  YN  +              L  EM+S+ +  D +T  T++          +A+E F
Sbjct: 429 DTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMF 488

Query: 246 ERMYKT-----------GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIA 294
           + M K+           G+ PD  TY+ ++      GK  E   LYE     G  PD I 
Sbjct: 489 KVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTIT 548

Query: 295 FSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMV 354
           +S +     +    D    +   M S    PN+V + TL+    KAG+      LF EM 
Sbjct: 549 YSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMG 608

Query: 355 ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
             G+  +  T   LI  + K      AL++++ M  +    D I   T+ NM   +   E
Sbjct: 609 RRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTI---TIRNMLTGLWSKE 665

Query: 415 EAER---LFEDMKLS 426
           E +R   + E +++S
Sbjct: 666 ELKRAVAMLEKLQMS 680


>gi|449467169|ref|XP_004151297.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g21222-like [Cucumis sativus]
 gi|449518833|ref|XP_004166440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g21222-like [Cucumis sativus]
          Length = 609

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/379 (24%), Positives = 176/379 (46%), Gaps = 5/379 (1%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           Q++ F FN +  Q   P  T+ Y   + +L   ++F+ I  L +EM    I+ D+I  + 
Sbjct: 74  QEAQFIFNSLVEQGHRPT-TVTYTALVAALTRQKRFKAISGLLSEMEETGIKPDSILLNA 132

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV-AS 286
           II          EA+E F++M ++G  P   T++ ++  Y    K EE + L E     +
Sbjct: 133 IINAFSESGNVKEAMEIFQKMEESGCKPTTSTFNTLIKGYGIIRKPEESMKLLELMTRTT 192

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
             KP+   +++L     +         V+ +M + GVQP++V YNTL  A  + G+   A
Sbjct: 193 NLKPNNRTYNILVGALCKKKSIKEAWNVVHQMLASGVQPDVVTYNTLARAYAQDGETNKA 252

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            S+  +M+   + P+E+T   ++  Y +     +AL +  RMR+     + +++N+L+  
Sbjct: 253 ESIIVDMLNKKVNPNERTCGIIVGGYCEQGNLAEALRVVYRMRDLGIHPNLVIFNSLIKG 312

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
             DIG  +  ++    M+ S   KPD  +++ ++N + S G +D   E+F++M + G+  
Sbjct: 313 FLDIGDSDGVDKALTMMEESG-VKPDVITFSTIMNGWSSAGRMDKCQEIFDDMLKSGIEP 371

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           ++   + L +   +A        +       GV+P+  +   ++S        E   KV 
Sbjct: 372 DIHVFSILAKGFVRAGEPVKAESLLNFMSKYGVRPNVVIFTTIISGWCTAGKMEKAWKVF 431

Query: 527 --TCLQQANPKLVAFLNLI 543
              C    +P L  F  LI
Sbjct: 432 EHMCDMDVSPNLKTFETLI 450



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/276 (23%), Positives = 135/276 (48%), Gaps = 1/276 (0%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN+ + +L   +  +    + ++M+++ ++ D +TY+T+     +    ++A      M 
Sbjct: 201 YNILVGALCKKKSIKEAWNVVHQMLASGVQPDVVTYNTLARAYAQDGETNKAESIIVDML 260

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
              + P+E T   I+  Y + G + E L +  R    G  P+ + F+ L K F + GD D
Sbjct: 261 NKKVNPNERTCGIIVGGYCEQGNLAEALRVVYRMRDLGIHPNLVIFNSLIKGFLDIGDSD 320

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
           G+   L  M+  GV+P+++ ++T++     AG+    + +FD+M++SG+ PD    + L 
Sbjct: 321 GVDKALTMMEESGVKPDVITFSTIMNGWSSAGRMDKCQEIFDDMLKSGIEPDIHVFSILA 380

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
           K + +A     A  L   M +     + +++ T+++     G +E+A ++FE M   D  
Sbjct: 381 KGFVRAGEPVKAESLLNFMSKYGVRPNVVIFTTIISGWCTAGKMEKAWKVFEHMCDMD-V 439

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
            P+  ++  ++  YG       A E+ + M E+ V 
Sbjct: 440 SPNLKTFETLIWGYGEAKQPWRAEEILQMMEEMNVV 475



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 99/174 (56%), Gaps = 8/174 (4%)

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M ++G+ PD +T+S I++ ++ +G++++   +++  + SG +PD   FS+L K F  +G+
Sbjct: 329 MEESGVKPDVITFSTIMNGWSSAGRMDKCQEIFDDMLKSGIEPDIHVFSILAKGFVRAGE 388

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
                 +L  M   GV+PN+V++ T++     AGK   A  +F+ M +  ++P+ KT   
Sbjct: 389 PVKAESLLNFMSKYGVRPNVVIFTTIISGWCTAGKMEKAWKVFEHMCDMDVSPNLKTFET 448

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCAD----IGLVEEAE 417
           LI  YG+A+    A E+ + M E    M+ +  N+ L + ++    IG+V +A+
Sbjct: 449 LIWGYGEAKQPWRAEEILQMMEE----MNVVPENSTLKLVSEAWRSIGMVNDAK 498



 Score = 89.0 bits (219), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 67/307 (21%), Positives = 137/307 (44%), Gaps = 6/307 (1%)

Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
           + ++++  + GK +E   ++   V  G +P  + ++ L         +  I  +L EM+ 
Sbjct: 61  TKLMNILVERGKPQEAQFIFNSLVEQGHRPTTVTYTALVAALTRQKRFKAISGLLSEMEE 120

Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380
            G++P+ ++ N ++ A  ++G    A  +F +M ESG  P   T   LIK YG  R  ++
Sbjct: 121 TGIKPDSILLNAIINAFSESGNVKEAMEIFQKMEESGCKPTTSTFNTLIKGYGIIRKPEE 180

Query: 381 ALELWERM-RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAM 439
           +++L E M R      +   YN L+        ++EA  +   M L+   +PD  +Y  +
Sbjct: 181 SMKLLELMTRTTNLKPNNRTYNILVGALCKKKSIKEAWNVVHQM-LASGVQPDVVTYNTL 239

Query: 440 LNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGV 499
              Y   G  + A  +  +M    V  N   C  ++    +   + + +RV     D G+
Sbjct: 240 ARAYAQDGETNKAESIIVDMLNKKVNPNERTCGIIVGGYCEQGNLAEALRVVYRMRDLGI 299

Query: 500 KPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAFLNLIEDNSTG--FENIKE 555
            P+  +   L+        S+ V K +T ++++   P ++ F  ++   S+    +  +E
Sbjct: 300 HPNLVIFNSLIKGFLDIGDSDGVDKALTMMEESGVKPDVITFSTIMNGWSSAGRMDKCQE 359

Query: 556 EFRNVIK 562
            F +++K
Sbjct: 360 IFDDMLK 366



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 84/182 (46%), Gaps = 2/182 (1%)

Query: 213 MVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK 272
           M  + ++ D IT+STI+         D+  E F+ M K+G+ PD   +S +   + ++G+
Sbjct: 329 MEESGVKPDVITFSTIMNGWSSAGRMDKCQEIFDDMLKSGIEPDIHVFSILAKGFVRAGE 388

Query: 273 VEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNT 332
             +  SL       G +P+ + F+ +   +  +G  +    V + M  + V PNL  + T
Sbjct: 389 PVKAESLLNFMSKYGVRPNVVIFTTIISGWCTAGKMEKAWKVFEHMCDMDVSPNLKTFET 448

Query: 333 LLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENK 392
           L+   G+A +P  A  +   M E  + P+  TL  + + +       DA    ER  EN+
Sbjct: 449 LIWGYGEAKQPWRAEEILQMMEEMNVVPENSTLKLVSEAWRSIGMVNDAKA--ERTEENE 506

Query: 393 WP 394
            P
Sbjct: 507 IP 508


>gi|152717466|dbj|BAF73724.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 153/328 (46%), Gaps = 12/328 (3%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + YN  + +     +F   E+L +EM+   I  + ITYS++I    + N  D A   F
Sbjct: 324 DVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMF 383

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
             M   G  P+ +T++ ++D Y  + ++++ + L      +G   D   ++ L   F   
Sbjct: 384 YLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLV 443

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES--------- 356
           GD +    +LQEM S G+ P++V  +TLL+ +   GK   A  +F  M +S         
Sbjct: 444 GDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHP 503

Query: 357 --GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
             G+ PD +T   LI          +A EL+E M       D I Y+++++       ++
Sbjct: 504 FNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLD 563

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
           EA ++F+ M    +  P+  ++T ++N Y   G VD+ +ELF EM   G+  N +    L
Sbjct: 564 EATQMFDSMGSKSF-SPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITL 622

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           I    K   I+  + +F   I  GV PD
Sbjct: 623 ICGFRKVGNINGALDIFQEMISSGVYPD 650



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 157/335 (46%), Gaps = 39/335 (11%)

Query: 205 LIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAIL 264
           L+  L  +M   +I  D  +++ +I C   C+    A+  F ++ K GL PD VT++ +L
Sbjct: 97  LVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLL 156

Query: 265 -----------------------------------DVYAKSGKVEEVLSLYERGVASGWK 289
                                              +   + G++ E ++L +R +  G +
Sbjct: 157 HGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQ 216

Query: 290 PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG-VQPNLVVYNTLLEAMGKAGKPGLARS 348
           P  I +  +     + GD      +L++M+ +  + PN+V+Y+ +++++ K G+   A++
Sbjct: 217 PTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQN 276

Query: 349 LFDEMVESGLTPDEKTLTALIKIY-GKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
           LF EM E G+ PD  T  ++I  +    RW+ DA +L + M E K   D + YN L+N  
Sbjct: 277 LFTEMQEKGIFPDLFTYNSMIVGFCSSGRWS-DAEQLLQEMLERKISPDVVTYNALINAF 335

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
              G   EAE L+++M L     P+  +Y++M++ +     +D A  +F  M+  G + N
Sbjct: 336 VKEGKFFEAEELYDEM-LPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPN 394

Query: 468 VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           ++    LI     A+RIDD + +     + G+  D
Sbjct: 395 LITFNTLIDGYCGAKRIDDGMELLHEMTETGLVAD 429



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 148/326 (45%), Gaps = 10/326 (3%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
            + Y+  + SL    +    + L  EM    I  D  TY+++I        + +A +  +
Sbjct: 255 VVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQ 314

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
            M +  + PD VTY+A+++ + K GK  E   LY+  +  G  P+ I +S +   F +  
Sbjct: 315 EMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQN 374

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
             D   ++   M + G  PNL+ +NTL++    A +      L  EM E+GL  D  T  
Sbjct: 375 RLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYN 434

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
            LI  +        AL+L + M  +    D +  +TLL+   D G +++A  +F+ M+ S
Sbjct: 435 TLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKS 494

Query: 427 ----------DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
                     +  +PD  +Y  +++   + G    A EL+EEM   G+  + +  + +I 
Sbjct: 495 KKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMID 554

Query: 477 CLGKARRIDDLVRVFGVSIDRGVKPD 502
            L K  R+D+  ++F     +   P+
Sbjct: 555 GLCKQSRLDEATQMFDSMGSKSFSPN 580



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/368 (22%), Positives = 163/368 (44%), Gaps = 7/368 (1%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           F  +    L P + + +N  +  L    +      L ++M       + +T++T++    
Sbjct: 137 FGKLTKLGLHP-DVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLC 195

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER-GVASGWKPDP 292
           R     EA+   +RM + GL P ++TY  I+D   K G     L+L  +    S   P+ 
Sbjct: 196 REGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNV 255

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           + +S +     + G +   + +  EM+  G+ P+L  YN+++     +G+   A  L  E
Sbjct: 256 VIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQE 315

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M+E  ++PD  T  ALI  + K     +A EL++ M       + I Y+++++       
Sbjct: 316 MLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNR 375

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
           ++ AE +F  M  +  C P+  ++  +++ Y     +D+ +EL  EM+E G+  +     
Sbjct: 376 LDAAEHMFYLMA-TKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYN 434

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETS--EDVGKVITCLQ 530
            LI        ++  + +    I  G+ PD   C  LL    LC+    +D  ++   +Q
Sbjct: 435 TLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLD--GLCDNGKLKDALEMFKVMQ 492

Query: 531 QANPKLVA 538
           ++   L A
Sbjct: 493 KSKKDLDA 500



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 120/265 (45%)

Query: 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
            ++AI+ F  M ++  +P  V +  ++ V  +  + + V+SLY++      + D  +F++
Sbjct: 60  LEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTI 119

Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
           L K F              ++  LG+ P++V +NTLL  +    +   A +LF +M E+ 
Sbjct: 120 LIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETT 179

Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417
             P+  T T L+    +     +A+ L +RM E+      I Y T+++     G    A 
Sbjct: 180 CRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSAL 239

Query: 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
            L   M+   +  P+   Y+A+++     G   +A  LF EM E G+  ++     +I  
Sbjct: 240 NLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVG 299

Query: 478 LGKARRIDDLVRVFGVSIDRGVKPD 502
              + R  D  ++    ++R + PD
Sbjct: 300 FCSSGRWSDAEQLLQEMLERKISPD 324



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 90/183 (49%), Gaps = 5/183 (2%)

Query: 216 NEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEE 275
           N +E D  TY+ +I+       F EA E +E M   G++PD +TYS+++D   K  +++E
Sbjct: 505 NGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDE 564

Query: 276 VLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLE 335
              +++   +  + P+ + F+ L   + ++G  D    +  EM   G+  N + Y TL+ 
Sbjct: 565 ATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIC 624

Query: 336 AMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN-KWP 394
              K G    A  +F EM+ SG+ PD  T+  ++       W+K+ L+    M E  +  
Sbjct: 625 GFRKVGNINGALDIFQEMISSGVYPDTITIRNML----TGLWSKEELKRAVAMLEKLQMS 680

Query: 395 MDF 397
           MD 
Sbjct: 681 MDL 683



 Score = 69.7 bits (169), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 74/148 (50%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN+ +  L    +F   E+L  EM    I  D ITYS++I    + +  DEA + F+ M 
Sbjct: 514 YNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMG 573

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
                P+ VT++ +++ Y K+G+V++ L L+      G   + I +  L   F + G+ +
Sbjct: 574 SKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNIN 633

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
           G   + QEM S GV P+ +    +L  +
Sbjct: 634 GALDIFQEMISSGVYPDTITIRNMLTGL 661



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 103/255 (40%), Gaps = 17/255 (6%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           +T  YN  +              L  EM+S+ +  D +T  T++          +A+E F
Sbjct: 429 DTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMF 488

Query: 246 ERMYKT-----------GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIA 294
           + M K+           G+ PD  TY+ ++      GK  E   LYE     G  PD I 
Sbjct: 489 KVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTIT 548

Query: 295 FSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMV 354
           +S +     +    D    +   M S    PN+V + TL+    KAG+      LF EM 
Sbjct: 549 YSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMG 608

Query: 355 ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
             G+  +  T   LI  + K      AL++++ M  +    D I   T+ NM   +   E
Sbjct: 609 RRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTI---TIRNMLTGLWSKE 665

Query: 415 EAER---LFEDMKLS 426
           E +R   + E +++S
Sbjct: 666 ELKRAVAMLEKLQMS 680


>gi|357491817|ref|XP_003616196.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355517531|gb|AES99154.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 981

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 152/316 (48%), Gaps = 4/316 (1%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D + ++ +I    + N +D+A+  FE M   G+ P + TY++I+ + + +  V++   L 
Sbjct: 499 DILEFNVMIKAYGKANHYDKAVLLFEEMKYQGISPADSTYNSIIQMLSGADLVDQARDLT 558

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
                 G+KP    FS +   +   G       V QEM S GV+PN  VY  L+    + 
Sbjct: 559 VEMQEMGFKPHCQTFSAVIGCYARLGQLSDAVIVYQEMISAGVKPNETVYGALINGFAEH 618

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G+   A   F  M ESGL+ +   LT L+K Y KA   K    ++++M+  +  +D    
Sbjct: 619 GRLDEALQYFHLMQESGLSANLVVLTTLMKSYSKAGDLKGVKSIYKQMQNMEGVLDLAAR 678

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           ++++   A++GLV EA+  FE  K  +  + D+ SY  M+ +Y   G +D AI++ EEM 
Sbjct: 679 SSMITAFAELGLVSEAKLTFE--KFKETGQADSTSYGIMMYVYKDIGMIDEAIKIAEEMK 736

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVR-VFGVSIDRGVKPDDRLCGCLLSVVSLCE-T 518
             G+  + +    ++ C    R+       ++ + + + + PDD     L +++   E  
Sbjct: 737 ISGLLRDCVSYNRVLTCYAINRQFHKCGELLYEMIVSKKLLPDDGTLIVLFTILKKAEFP 796

Query: 519 SEDVGKVITCLQQANP 534
            E   ++  C Q+  P
Sbjct: 797 VEAAEQLELCYQEGKP 812



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 113/451 (25%), Positives = 198/451 (43%), Gaps = 46/451 (10%)

Query: 94  WVNP--TKPRRSVLSLQRQKRSTYSYNPRVRD--LKLFARKLNDCDNTEEAFLRAITEIP 149
           WV+P  T  R   L L     ST + +  V D  LKL     ND ++T ++F   I+  P
Sbjct: 41  WVSPPLTCFRSKTLPLPTNVSSTENDSDNVLDSVLKLLETS-NDVEDTLDSFGEIIS--P 97

Query: 150 HQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQL 209
            + T     +IL  L+ W+     F W +SQN +    I YNV +++L   +Q+  +   
Sbjct: 98  KEIT-----MILKKLRNWEIVVRVFKWFRSQNNYVHNVIHYNVVLRTLGRAKQWDQLRLC 152

Query: 210 ANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAK 269
             EM  N +   N TYS ++ C  +  L  EA+ W + M   G  PDEVT S ++ V   
Sbjct: 153 WIEMAKNNVLPTNNTYSMLVHCYGKGGLGKEALLWVKHMMVRGFFPDEVTMSTVVKVLKD 212

Query: 270 SGKVEEVLSLYER------------------GVASGWKPD-PIAFSVL--GKMFGESGDY 308
            G+ +     Y+                    +A G +   PI+F      ++F   G  
Sbjct: 213 VGEFDRADRFYKNWCGGKVDLDDLDFDSSDCAIADGSRSSVPISFKQFLSTELFKTGGGI 272

Query: 309 DGIRYVLQEMKSLG-VQPNL-VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
                +  +M+ +  ++P L   YNTL++  GKAG+   A  +F +M++SG+  D  T  
Sbjct: 273 RDSNMLSMDMEEIAPLKPRLSTTYNTLIDLYGKAGRLKDAADVFADMMKSGVAMDTCTFN 332

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
            LI I G      +A  L ++M E     +   YN  L++ A  G ++ A   +  ++  
Sbjct: 333 TLIFISGSHGNLLEAESLLDKMEERGISSNTRTYNIFLSLYATAGSIDAALSYYRRIREV 392

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL---GKARR 483
               PD  +Y A+L    +   V     + +EM +  V+++ +  + +++     G   +
Sbjct: 393 GLF-PDTVTYRALLGALCTENMVQAVEGVIDEMEKNSVSLDALSLSGIVKMYINEGDVDK 451

Query: 484 IDDLVRVFGVSIDRGVKPDDRLCGCLLSVVS 514
            +DL++ +G       +P   +C  ++   +
Sbjct: 452 ANDLLQKYG-------EPPSFICAAIIDAFA 475



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 135/293 (46%), Gaps = 11/293 (3%)

Query: 176 WIKSQNLF---------PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           W +++N+F           + + +NV +K+      +     L  EM    I   + TY+
Sbjct: 480 WAEAENIFYRKRDKARQARDILEFNVMIKAYGKANHYDKAVLLFEEMKYQGISPADSTYN 539

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           +II      +L D+A +    M + G  P   T+SA++  YA+ G++ + + +Y+  +++
Sbjct: 540 SIIQMLSGADLVDQARDLTVEMQEMGFKPHCQTFSAVIGCYARLGQLSDAVIVYQEMISA 599

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G KP+   +  L   F E G  D        M+  G+  NLVV  TL+++  KAG     
Sbjct: 600 GVKPNETVYGALINGFAEHGRLDEALQYFHLMQESGLSANLVVLTTLMKSYSKAGDLKGV 659

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
           +S++ +M       D    +++I  + +     +A   +E+ +E     D   Y  ++ +
Sbjct: 660 KSIYKQMQNMEGVLDLAARSSMITAFAELGLVSEAKLTFEKFKETGQA-DSTSYGIMMYV 718

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
             DIG+++EA ++ E+MK+S   + D  SY  +L  Y          EL  EM
Sbjct: 719 YKDIGMIDEAIKIAEEMKISGLLR-DCVSYNRVLTCYAINRQFHKCGELLYEM 770



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 115/257 (44%), Gaps = 6/257 (2%)

Query: 259 TYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEM 318
           TY+ ++D+Y K+G++++   ++   + SG   D   F+ L  + G  G+      +L +M
Sbjct: 295 TYNTLIDLYGKAGRLKDAADVFADMMKSGVAMDTCTFNTLIFISGSHGNLLEAESLLDKM 354

Query: 319 KSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWA 378
           +  G+  N   YN  L     AG    A S +  + E GL PD  T  AL+         
Sbjct: 355 EERGISSNTRTYNIFLSLYATAGSIDAALSYYRRIREVGLFPDTVTYRALLGALCTENMV 414

Query: 379 KDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTA 438
           +    + + M +N   +D +  + ++ M  + G V++A  L     L  Y +P ++   A
Sbjct: 415 QAVEGVIDEMEKNSVSLDALSLSGIVKMYINEGDVDKANDL-----LQKYGEPPSFICAA 469

Query: 439 MLNIYGSGGNVDNAIELF-EEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDR 497
           +++ +   G    A  +F  +  +   A +++    +I+  GKA   D  V +F     +
Sbjct: 470 IIDAFAEKGFWAEAENIFYRKRDKARQARDILEFNVMIKAYGKANHYDKAVLLFEEMKYQ 529

Query: 498 GVKPDDRLCGCLLSVVS 514
           G+ P D     ++ ++S
Sbjct: 530 GISPADSTYNSIIQMLS 546



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 136/317 (42%), Gaps = 44/317 (13%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
            EM+S  ++ +   Y  +I         DEA+++F  M ++GL  + V  + ++  Y+K+
Sbjct: 594 QEMISAGVKPNETVYGALINGFAEHGRLDEALQYFHLMQESGLSANLVVLTTLMKSYSKA 653

Query: 271 GKVEEVLSLYER-----GVA--SGWKPDPIAFSVLG---------KMFGESGDYDGIRY- 313
           G ++ V S+Y++     GV   +       AF+ LG         + F E+G  D   Y 
Sbjct: 654 GDLKGVKSIYKQMQNMEGVLDLAARSSMITAFAELGLVSEAKLTFEKFKETGQADSTSYG 713

Query: 314 -----------------VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356
                            + +EMK  G+  + V YN +L       +      L  EM+ S
Sbjct: 714 IMMYVYKDIGMIDEAIKIAEEMKISGLLRDCVSYNRVLTCYAINRQFHKCGELLYEMIVS 773

Query: 357 G-LTPDEKTLTALIKIYGKARWAKDALELWER-MRENKWPMDFILYNTLLNMCADIGL-V 413
             L PD+ TL  L  I  KA +  +A E  E   +E K       Y  L ++     L +
Sbjct: 774 KKLLPDDGTLIVLFTILKKAEFPVEAAEQLELCYQEGKPYASQATYTALYSLLGMHTLAL 833

Query: 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTC 473
           + A+ + E++  S        +Y   +  Y S G+V+ A+ +  +M +  V  +++    
Sbjct: 834 KFAQTVLENLDSSA-------AYNVAIYAYASAGDVEKALNIHMKMRDKHVEPDIVTYIN 886

Query: 474 LIQCLGKARRIDDLVRV 490
           L+ C GKA  ++ + ++
Sbjct: 887 LVGCYGKAGMVEGVKKI 903


>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
 gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
          Length = 597

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 108/434 (24%), Positives = 193/434 (44%), Gaps = 15/434 (3%)

Query: 83  RTPL-----LSKPKSTWVNPTKPRRSVLSLQRQKRSTYSYNPRVRDLKLFARKLNDCDNT 137
           R PL      +K  S  V   +    V+SL +Q       +P +  L +F          
Sbjct: 86  RKPLPCIIQFAKLLSAIVKMGQYYDVVISLSKQMELV-GLSPNIYTLSIFMNCFCQLQRV 144

Query: 138 EEAF--LRAITEIPHQPTRENALLILNSL----KFWQKSYFFFNWIKSQNLFPMETIFYN 191
           +  F  L  + ++  QPT      ++N L    +F Q    F + + ++   P +   YN
Sbjct: 145 DLGFSVLAKVIKLGLQPTIVTFTTLINGLCKVGEFAQAVELFDDMV-AKGCQP-DVYTYN 202

Query: 192 VTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKT 251
             +  L    +      L  +M     + + +TYST+I    R  L +EA++ F  M   
Sbjct: 203 TIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAK 262

Query: 252 GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGI 311
           G+ PD  TY++++    K  + +E  +L     +    PD + F+VL   F + G     
Sbjct: 263 GISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEA 322

Query: 312 RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371
             VL+ M  +GV+PN+V Y++L+           AR LF  M+  G  P+  +   LI  
Sbjct: 323 LGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFSYNILING 382

Query: 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
           Y KA+   +A++L+  M       + + YNTL++    +G + EA+ LF +M  ++   P
Sbjct: 383 YCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNM-CTNGNLP 441

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           D ++Y+ +L+ +   G +  A  LF  M    +  N++  T L+  + K+    D  ++F
Sbjct: 442 DLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAMCKSGNHKDARKLF 501

Query: 492 GVSIDRGVKPDDRL 505
                +G++P  +L
Sbjct: 502 SELFVQGLQPHVQL 515



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 87/293 (29%), Positives = 142/293 (48%), Gaps = 5/293 (1%)

Query: 213 MVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK 272
           M +  I  D  TY+++I    + + + EA      M    +MPD VT++ ++D + K GK
Sbjct: 259 MKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCKEGK 318

Query: 273 VEEVLSLYERGVASGWKPDPIAFSVLGKMFGES--GDYDGIRYVLQEMKSLGVQPNLVVY 330
           V E L + +     G +P+ + +S L  M+G S   D    R +   M + G +PN+  Y
Sbjct: 319 VSEALGVLKTMTEMGVEPNVVTYSSL--MYGYSLWTDVVEARKLFHVMITKGCKPNIFSY 376

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
           N L+    KA +   A  LF+EM+  GLTP+  +   LI  + +    ++A +L+  M  
Sbjct: 377 NILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCT 436

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
           N    D   Y+ LL+     G + +A RLF  M+ S Y KP+   YT +++     GN  
Sbjct: 437 NGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQ-STYLKPNLVMYTILVHAMCKSGNHK 495

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
           +A +LF E+   G+  +V   T +I  L K   +D+ +  F      G  PD+
Sbjct: 496 DARKLFSELFVQGLQPHVQLYTTIINGLCKEGLLDEALEAFRNMEADGCPPDE 548



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 82/331 (24%), Positives = 159/331 (48%), Gaps = 3/331 (0%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           FN +  +   P    F  +    ++ G+ + ++  L+ +M    +  +  T S  + C  
Sbjct: 80  FNHMLHRKPLPCIIQFAKLLSAIVKMGQYYDVVISLSKQMELVGLSPNIYTLSIFMNCFC 139

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
           +    D       ++ K GL P  VT++ +++   K G+  + + L++  VA G +PD  
Sbjct: 140 QLQRVDLGFSVLAKVIKLGLQPTIVTFTTLINGLCKVGEFAQAVELFDDMVAKGCQPDVY 199

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
            ++ +     + G+      +L++M+  G QPN+V Y+TL++++ +      A  +F  M
Sbjct: 200 TYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYM 259

Query: 354 VESGLTPDEKTLTALIKIYGK-ARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
              G++PD  T T+LI+   K +RW + +  L E    N  P D + +N L++     G 
Sbjct: 260 KAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMP-DIVTFNVLVDTFCKEGK 318

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
           V EA  + + M      +P+  +Y++++  Y    +V  A +LF  M   G   N+    
Sbjct: 319 VSEALGVLKTMTEMGV-EPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFSYN 377

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
            LI    KA+RID+ +++F   I +G+ P++
Sbjct: 378 ILINGYCKAKRIDEAMQLFNEMIHQGLTPNN 408



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 95/400 (23%), Positives = 178/400 (44%), Gaps = 18/400 (4%)

Query: 114 TYSYNPRVRDLKLFARKLNDCDNTEEA----FLRAITEIPHQPTRENALLILNSL---KF 166
            Y+YN  +  L         C   E A     L+ + E   QP       +++SL   + 
Sbjct: 198 VYTYNTIINGL---------CKIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRL 248

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
             ++   F+++K++ + P    + ++     +F R ++    L NEM S  I  D +T++
Sbjct: 249 VNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSR-WKEASALLNEMTSLNIMPDIVTFN 307

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
            ++    +     EA+   + M + G+ P+ VTYS+++  Y+    V E   L+   +  
Sbjct: 308 VLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITK 367

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G KP+  ++++L   + ++   D    +  EM   G+ PN V YNTL+    + GK   A
Sbjct: 368 GCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREA 427

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
           + LF  M  +G  PD  T + L+  + K  +   A  L+  M+      + ++Y  L++ 
Sbjct: 428 QDLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHA 487

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               G  ++A +LF ++ +    +P    YT ++N     G +D A+E F  M   G   
Sbjct: 488 MCKSGNHKDARKLFSELFVQGL-QPHVQLYTTIINGLCKEGLLDEALEAFRNMEADGCPP 546

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLC 506
           + +    +I+ L + +     + + G   DRG   D R C
Sbjct: 547 DEISYNVIIRGLLQHKDESRALLLVGEMRDRGFIADVRPC 586


>gi|449440401|ref|XP_004137973.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Cucumis sativus]
          Length = 606

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/364 (25%), Positives = 162/364 (44%), Gaps = 36/364 (9%)

Query: 183 FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
           F    I YN  +      +    + ++ + M  N ++ +  TY+ +I    R +  +EA 
Sbjct: 223 FKPSVITYNTLLNGYIEIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAE 282

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
           + F+ M K G+ PD   Y++I++   K G ++    L++        P+   +  L    
Sbjct: 283 KLFDEMLKKGIEPDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGA 342

Query: 303 GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG--------------------- 341
            ++G+      ++ +M+S GV  N V++NTL++   K G                     
Sbjct: 343 CKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDA 402

Query: 342 ------KPGLARS--------LFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
                   G  RS        L   M E G+ P+  + + LI IY K +   +A  L++ 
Sbjct: 403 FTCNIIASGFCRSNRREEAKRLLLTMEERGVAPNVVSFSILIDIYCKEQNFAEARRLFKV 462

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           M +       + YN  +      G +EEA +L  +M+      PD Y+YT++++   + G
Sbjct: 463 MEKKGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLM-PDTYTYTSLIDGERASG 521

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCG 507
           NVD A+ELF EM +LG+  NV+  T +I  L K  R D+  +++      G+ PDD +  
Sbjct: 522 NVDRALELFNEMPQLGLNRNVVTYTVIISGLSKDGRADEAFKLYDEMNKEGIVPDDGIYS 581

Query: 508 CLLS 511
            L++
Sbjct: 582 SLIA 585



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 130/284 (45%), Gaps = 1/284 (0%)

Query: 219 ELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS 278
           E+D  +    +   KR    +  +E+  +M  +G+     +++A++D   K G+V    +
Sbjct: 154 EIDERSCFEFLLALKRSGNMELCVEFLRQMVDSGIEIRVCSWTAVVDGLCKKGEVVRAKA 213

Query: 279 LYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMG 338
           L +  V  G+KP  I ++ L   + E  D  G+  +L  M+   V  N+  Y  L+E   
Sbjct: 214 LMDELVCKGFKPSVITYNTLLNGYIEIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYS 273

Query: 339 KAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFI 398
           ++ K   A  LFDEM++ G+ PD    T++I    K    K A  L++ M E +   +  
Sbjct: 274 RSSKIEEAEKLFDEMLKKGIEPDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAY 333

Query: 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458
            Y  L+N     G ++ AE +  DM+ S     +   +  +++ Y   G +D A+ L   
Sbjct: 334 TYGALINGACKAGEMKAAEMMVNDMQ-SKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNI 392

Query: 459 MSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           M + G  I+   C  +     ++ R ++  R+     +RGV P+
Sbjct: 393 MQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTMEERGVAPN 436



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 140/277 (50%), Gaps = 10/277 (3%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           ++++  F+ +  + L P    +  +   + + G + +  E + N+M S  ++++ + ++T
Sbjct: 314 KRAFVLFDEMTERRLVPNAYTYGALINGACKAG-EMKAAEMMVNDMQSKGVDVNRVIFNT 372

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEE----VLSLYERG 283
           ++    +  + DEA+     M + G   D  T + I   + +S + EE    +L++ ERG
Sbjct: 373 LMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTMEERG 432

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
           VA    P+ ++FS+L  ++ +  ++   R + + M+  G  P++V YN  +E   K GK 
Sbjct: 433 VA----PNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKM 488

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
             A  L +EM E GL PD  T T+LI     +     ALEL+  M +     + + Y  +
Sbjct: 489 EEAYKLINEMQERGLMPDTYTYTSLIDGERASGNVDRALELFNEMPQLGLNRNVVTYTVI 548

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
           ++  +  G  +EA +L+++M   +   PD+  Y++++
Sbjct: 549 ISGLSKDGRADEAFKLYDEMN-KEGIVPDDGIYSSLI 584



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 95/204 (46%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           +L N M     E+D  T + I +   R N  +EA      M + G+ P+ V++S ++D+Y
Sbjct: 388 RLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTMEERGVAPNVVSFSILIDIY 447

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            K     E   L++     G  P  + ++   + + + G  +    ++ EM+  G+ P+ 
Sbjct: 448 CKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPDT 507

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
             Y +L++    +G    A  LF+EM + GL  +  T T +I    K   A +A +L++ 
Sbjct: 508 YTYTSLIDGERASGNVDRALELFNEMPQLGLNRNVVTYTVIISGLSKDGRADEAFKLYDE 567

Query: 388 MRENKWPMDFILYNTLLNMCADIG 411
           M +     D  +Y++L+     +G
Sbjct: 568 MNKEGIVPDDGIYSSLIASLHKVG 591


>gi|297727505|ref|NP_001176116.1| Os10g0368800 [Oryza sativa Japonica Group]
 gi|20043026|gb|AAM08834.1|AC113335_14 Putative PPR-repeat protein [Oryza sativa Japonica Group]
 gi|22830267|gb|AAN08650.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|31431615|gb|AAP53366.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255679344|dbj|BAH94844.1| Os10g0368800 [Oryza sativa Japonica Group]
          Length = 913

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 141/293 (48%), Gaps = 1/293 (0%)

Query: 210 ANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAK 269
           A  M+    EL+ + ++T+I          EA E +E M   G  PD  TYS ++    K
Sbjct: 299 ARAMLGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCK 358

Query: 270 SGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVV 329
            G++   + L       G+ P+ + ++++   F ++G +D  R +L+EM + G+  N   
Sbjct: 359 LGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQG 418

Query: 330 YNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMR 389
           YN ++ A+ K G+   A  L  EM   G  PD  +   +I         ++A  ++E + 
Sbjct: 419 YNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLL 478

Query: 390 ENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNV 449
           E     + I YNT+++     G  ++A RL ++M L   C  D  SY  ++      GNV
Sbjct: 479 EEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHG-CSLDVVSYNGLIKAMCKDGNV 537

Query: 450 DNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           D ++ L EEM+E G+  N +    LI  L K RR+ D + +    +++G+ PD
Sbjct: 538 DRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPD 590



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/274 (24%), Positives = 122/274 (44%), Gaps = 1/274 (0%)

Query: 183 FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
           F    + Y + + S      +     L  EM +  + L++  Y+ +I    +    DEA+
Sbjct: 377 FAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAM 436

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
              + M   G  PD  +Y+ I+     + ++EE   ++E  +  G   + I ++ +    
Sbjct: 437 GLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHAL 496

Query: 303 GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
              G +     + +EM   G   ++V YN L++AM K G    +  L +EM E G+ P+ 
Sbjct: 497 LRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNN 556

Query: 363 KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED 422
            +   LI    K R  +DALEL ++M       D + YNTL+N    +G +  A  L E 
Sbjct: 557 VSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEK 616

Query: 423 MKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELF 456
           +  ++   PD  +Y  +++ +     +D+A  L 
Sbjct: 617 LH-NENVHPDIITYNILISWHCKVRLLDDAAMLL 649



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 86/359 (23%), Positives = 151/359 (42%), Gaps = 49/359 (13%)

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW-KPDPIAFSVLGKMFGESGDY 308
           + G+ P   +Y+ +L V A++    + L+LY R V      P    F V  +     G  
Sbjct: 132 RFGVQPSFRSYNVVLSVLARADCHADALALYRRMVHRDRVPPTTFTFGVAARALCRLGRA 191

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEA-------------------MGKA--------- 340
           D    +L+ M   G  P+ V+Y T++ A                   MG A         
Sbjct: 192 DEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDV 251

Query: 341 --GKPGLAR-----SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKW 393
             G  GL R      L D M+  G  P   T   L++   + R A +A  +  R+ E   
Sbjct: 252 VRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPE--- 308

Query: 394 PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAI 453
            ++ +L+NT++  C   G + EA  L+E M L   C+PD ++Y+ +++     G + +A+
Sbjct: 309 -LNVVLFNTVIGGCLAEGKLAEATELYETMGLKG-CQPDAHTYSILMHGLCKLGRIGSAV 366

Query: 454 ELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVV 513
            L  EM + G A NV+  T ++    K    DD   +      +G+  + +  G    + 
Sbjct: 367 RLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQ--GYNGMIY 424

Query: 514 SLCETS---EDVGKVITCLQQA-NPKLVAFLNLIED--NSTGFENIKEEFRNVIKDTEV 566
           +LC+     E +G +     Q  NP + ++  +I    N+   E  +  F N++++  V
Sbjct: 425 ALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVV 483



 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 69/298 (23%), Positives = 131/298 (43%), Gaps = 3/298 (1%)

Query: 190 YNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERM 248
           Y++ M  L + GR    + +L  EM       + +TY+ ++    +  ++D+     E M
Sbjct: 349 YSILMHGLCKLGRIGSAV-RLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEM 407

Query: 249 YKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY 308
              GL  +   Y+ ++    K G+++E + L +   + G  PD  +++ +      +   
Sbjct: 408 SAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQM 467

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
           +   ++ + +   GV  N + YNT++ A+ + G+   A  L  EM+  G + D  +   L
Sbjct: 468 EEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGL 527

Query: 369 IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428
           IK   K      +L L E M E     + + YN L++       V +A  L + M L+  
Sbjct: 528 IKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQM-LNQG 586

Query: 429 CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
             PD  +Y  ++N     G +  A+ L E++    V  +++    LI    K R +DD
Sbjct: 587 LAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDD 644



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 100/212 (47%), Gaps = 3/212 (1%)

Query: 177 IKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCN 236
           ++SQ   P +   YN  +  L    Q +  E +   ++   +  + ITY+TII    R  
Sbjct: 442 MRSQGCNP-DICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDG 500

Query: 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS 296
            + +A+   + M   G   D V+Y+ ++    K G V+  L L E     G KP+ ++++
Sbjct: 501 RWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYN 560

Query: 297 VL-GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVE 355
           +L  ++  E    D +  + ++M + G+ P++V YNTL+  + K G    A +L +++  
Sbjct: 561 ILISELCKERRVRDALE-LSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHN 619

Query: 356 SGLTPDEKTLTALIKIYGKARWAKDALELWER 387
             + PD  T   LI  + K R   DA  L  R
Sbjct: 620 ENVHPDIITYNILISWHCKVRLLDDAAMLLNR 651



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 85/206 (41%), Gaps = 2/206 (0%)

Query: 316 QEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK-TLTALIKIYGK 374
           Q  +  GVQP+   YN +L  + +A     A +L+  MV     P    T     +   +
Sbjct: 128 QLPRRFGVQPSFRSYNVVLSVLARADCHADALALYRRMVHRDRVPPTTFTFGVAARALCR 187

Query: 375 ARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNY 434
              A +AL L   M  +    D +LY T+++   D G V EA  L  +M L   C  D  
Sbjct: 188 LGRADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMG-CAADVN 246

Query: 435 SYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVS 494
           ++  ++      G V  A  L + M   G    VM    L+Q L + R+ D+   + G  
Sbjct: 247 TFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRV 306

Query: 495 IDRGVKPDDRLCGCLLSVVSLCETSE 520
            +  V   + + G  L+   L E +E
Sbjct: 307 PELNVVLFNTVIGGCLAEGKLAEATE 332



 Score = 42.7 bits (99), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 23/118 (19%), Positives = 57/118 (48%), Gaps = 1/118 (0%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           +S      +  + + P   + YN+ +  L   R+ +   +L+ +M++  +  D +TY+T+
Sbjct: 539 RSLVLLEEMAEKGIKP-NNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTL 597

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           I    +      A+   E+++   + PD +TY+ ++  + K   +++   L  R +A+
Sbjct: 598 INGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDAAMLLNRAMAA 655


>gi|168000162|ref|XP_001752785.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162695948|gb|EDQ82289.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 482

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 162/354 (45%), Gaps = 5/354 (1%)

Query: 158 LLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNE 217
           L+ L  L  W        W+K Q+ +      +N+ + +     Q  + E    EM    
Sbjct: 78  LIRLRQLNKWTMVLEVLLWLKQQDWWNFGIHDFNLMIAAYGKLGQPGIAELSFTEMREVG 137

Query: 218 IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL 277
           +E +   +++++    R   F  A   ++ M KTG  P EVTY   ++   K+ +  +  
Sbjct: 138 LEPNVACFTSLLEAHARTGNFVRAESIYQEMLKTGPAPTEVTYQVYINALCKAERFNDAE 197

Query: 278 SLYE-RGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA 336
            +++    ++  KPD   ++++   +G++G +   + + ++MK  GV   +V +N+L+  
Sbjct: 198 RIFKCLDESAEAKPDARLYNLMLHTYGKAGKFSEQQALFRQMKGAGVPMTVVTFNSLMAF 257

Query: 337 MGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMD 396
                    A +    M  + + PD  T T LI  Y KAR  ++A  ++  M  +     
Sbjct: 258 QKTVAD---AEACLRHMQAAKIKPDVITYTGLINAYSKARRVEEAHVVFREMVASGLRPS 314

Query: 397 FILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELF 456
            I YNTLL+  A    VE AE LF+ M   D C+PD  SYT +L  Y + GN+  A  L 
Sbjct: 315 RIAYNTLLDAYAKCKEVEGAESLFKSMG-QDRCRPDIRSYTTLLAAYANTGNMKKAERLL 373

Query: 457 EEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
           + M + G+  NV+    L+Q       I+ +++ F      G+KP+  +   L+
Sbjct: 374 KRMKQAGLEPNVVTYGTLMQGYTSVHDINAMLQTFEDLQKAGIKPNSTIFTLLV 427



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 161/358 (44%), Gaps = 17/358 (4%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           F  ++   L P    F ++     R G  F   E +  EM+        +TY   I    
Sbjct: 130 FTEMREVGLEPNVACFTSLLEAHARTG-NFVRAESIYQEMLKTGPAPTEVTYQVYINALC 188

Query: 234 RCNLFDEAIEWFERMYK-----TGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
           +   F++A    ER++K         PD   Y+ +L  Y K+GK  E  +L+ +   +G 
Sbjct: 189 KAERFNDA----ERIFKCLDESAEAKPDARLYNLMLHTYGKAGKFSEQQALFRQMKGAGV 244

Query: 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348
               + F+ L        D +     L+ M++  ++P+++ Y  L+ A  KA +   A  
Sbjct: 245 PMTVVTFNSLMAFQKTVADAEA---CLRHMQAAKIKPDVITYTGLINAYSKARRVEEAHV 301

Query: 349 LFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCA 408
           +F EMV SGL P       L+  Y K +  + A  L++ M +++   D   Y TLL   A
Sbjct: 302 VFREMVASGLRPSRIAYNTLLDAYAKCKEVEGAESLFKSMGQDRCRPDIRSYTTLLAAYA 361

Query: 409 DIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINV 468
           + G +++AERL + MK +   +P+  +Y  ++  Y S  +++  ++ FE++ + G+  N 
Sbjct: 362 NTGNMKKAERLLKRMKQAG-LEPNVVTYGTLMQGYTSVHDINAMLQTFEDLQKAGIKPNS 420

Query: 469 MGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
              T L++  G+    +  +  F   +D G   D R    L+     C+TSE   +V+
Sbjct: 421 TIFTLLVRTFGQQEDFESALSWFKKMLDSGCPADQRSRAALMDA---CQTSEQKQEVL 475



 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 60/261 (22%), Positives = 113/261 (43%), Gaps = 7/261 (2%)

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+   F+ L +    +G++     + QEM   G  P  V Y   + A+ KA +   A
Sbjct: 137 GLEPNVACFTSLLEAHARTGNFVRAESIYQEMLKTGPAPTEVTYQVYINALCKAERFNDA 196

Query: 347 RSLFDEMVESG-LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405
             +F  + ES    PD +    ++  YGKA    +   L+ +M+    PM  + +N+L+ 
Sbjct: 197 ERIFKCLDESAEAKPDARLYNLMLHTYGKAGKFSEQQALFRQMKGAGVPMTVVTFNSLMA 256

Query: 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
               +   E   R  +  K+    KPD  +YT ++N Y     V+ A  +F EM   G+ 
Sbjct: 257 FQKTVADAEACLRHMQAAKI----KPDVITYTGLINAYSKARRVEEAHVVFREMVASGLR 312

Query: 466 INVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKV 525
            + +    L+    K + ++    +F        +PD R    LL+  +     +   ++
Sbjct: 313 PSRIAYNTLLDAYAKCKEVEGAESLFKSMGQDRCRPDIRSYTTLLAAYANTGNMKKAERL 372

Query: 526 ITCLQQAN--PKLVAFLNLIE 544
           +  ++QA   P +V +  L++
Sbjct: 373 LKRMKQAGLEPNVVTYGTLMQ 393



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 48/232 (20%), Positives = 110/232 (47%), Gaps = 5/232 (2%)

Query: 158 LLILNSLKFWQKSYF----FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEM 213
           ++  NSL  +QK+          +++  + P + I Y   + +    R+ +    +  EM
Sbjct: 248 VVTFNSLMAFQKTVADAEACLRHMQAAKIKP-DVITYTGLINAYSKARRVEEAHVVFREM 306

Query: 214 VSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKV 273
           V++ +    I Y+T++    +C   + A   F+ M +    PD  +Y+ +L  YA +G +
Sbjct: 307 VASGLRPSRIAYNTLLDAYAKCKEVEGAESLFKSMGQDRCRPDIRSYTTLLAAYANTGNM 366

Query: 274 EEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTL 333
           ++   L +R   +G +P+ + +  L + +    D + +    ++++  G++PN  ++  L
Sbjct: 367 KKAERLLKRMKQAGLEPNVVTYGTLMQGYTSVHDINAMLQTFEDLQKAGIKPNSTIFTLL 426

Query: 334 LEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
           +   G+      A S F +M++SG   D+++  AL+     +   ++ LE +
Sbjct: 427 VRTFGQQEDFESALSWFKKMLDSGCPADQRSRAALMDACQTSEQKQEVLEYF 478


>gi|168045050|ref|XP_001774992.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673739|gb|EDQ60258.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 385

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 168/345 (48%), Gaps = 9/345 (2%)

Query: 161 LNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIEL 220
           +N +  WQ     F  +++Q  +  +   Y   +  L   +Q      + + ++ +++  
Sbjct: 12  VNGVALWQ----VFELVRAQEWYTADLSTYLKLLTMLAKAKQAAEASNVFDCLLEDKLRP 67

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFE--RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS 278
               ++ ++T   + N F +A+E FE  R+Y+ G +PD+ TY+A++    ++G   +   
Sbjct: 68  TTAIFTALLTVFTQSNQFKKALEIFESMRLYE-GCVPDKYTYTAMIKGCCEAGLYVQARK 126

Query: 279 LYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMG 338
           +++  +  G KP  + +++L   +G++G +  +  VL  M++  V P+ V +NTL+   G
Sbjct: 127 IFDEMMIEGVKPSIVTYNILIHGYGKAGLFREVERVLSTMEANNVAPDTVTWNTLIRVFG 186

Query: 339 KAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFI 398
              K       ++ ++  GL PD  TL +LI  YG A   +    + + M+   +PM  I
Sbjct: 187 LNCKIPEMEQAYEGLLRQGLQPDMVTLNSLISAYGTAGLFEKMESVTQYMQRYNYPMTRI 246

Query: 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458
            YN ++      G+V++ E  ++ MK +++ KP++ ++ +ML+ YG  G   N  ++  +
Sbjct: 247 TYNIIMEAYGRAGMVDQMEETWKRMK-AEFVKPNSSTFCSMLSAYGRHGYWHNVEKVMRQ 305

Query: 459 MSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
                 A   +     I    +A+  +D+ ++F     +G  PDD
Sbjct: 306 ARYFDAADTAV-YNAAIDAFQRAQNFEDMEKIFEEMKLKGHAPDD 349



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 116/263 (44%), Gaps = 8/263 (3%)

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
           +L  Y  LL  + KA +   A ++FD ++E  L P     TAL+ ++ ++   K ALE++
Sbjct: 33  DLSTYLKLLTMLAKAKQAAEASNVFDCLLEDKLRPTTAIFTALLTVFTQSNQFKKALEIF 92

Query: 386 ERMR--ENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIY 443
           E MR  E   P D   Y  ++  C + GL  +A ++F++M +    KP   +Y  +++ Y
Sbjct: 93  ESMRLYEGCVP-DKYTYTAMIKGCCEAGLYVQARKIFDEMMIEG-VKPSIVTYNILIHGY 150

Query: 444 GSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
           G  G       +   M    VA + +    LI+  G   +I ++ + +   + +G++PD 
Sbjct: 151 GKAGLFREVERVLSTMEANNVAPDTVTWNTLIRVFGLNCKIPEMEQAYEGLLRQGLQPDM 210

Query: 504 RLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKD 563
                L+S        E +  V   +Q+ N  +      I   + G   + ++     K 
Sbjct: 211 VTLNSLISAYGTAGLFEKMESVTQYMQRYNYPMTRITYNIIMEAYGRAGMVDQMEETWKR 270

Query: 564 TEVDARRP----FCNCLIDICRN 582
            + +  +P    FC+ L    R+
Sbjct: 271 MKAEFVKPNSSTFCSMLSAYGRH 293



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/317 (20%), Positives = 134/317 (42%), Gaps = 3/317 (0%)

Query: 256 DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVL 315
           D  TY  +L + AK+ +  E  ++++  +    +P    F+ L  +F +S  +     + 
Sbjct: 33  DLSTYLKLLTMLAKAKQAAEASNVFDCLLEDKLRPTTAIFTALLTVFTQSNQFKKALEIF 92

Query: 316 QEMKSL-GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK 374
           + M+   G  P+   Y  +++   +AG    AR +FDEM+  G+ P   T   LI  YGK
Sbjct: 93  ESMRLYEGCVPDKYTYTAMIKGCCEAGLYVQARKIFDEMMIEGVKPSIVTYNILIHGYGK 152

Query: 375 ARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNY 434
           A   ++   +   M  N    D + +NTL+ +      + E E+ +E + L    +PD  
Sbjct: 153 AGLFREVERVLSTMEANNVAPDTVTWNTLIRVFGLNCKIPEMEQAYEGL-LRQGLQPDMV 211

Query: 435 SYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVS 494
           +  ++++ YG+ G  +    + + M      +  +    +++  G+A  +D +   +   
Sbjct: 212 TLNSLISAYGTAGLFEKMESVTQYMQRYNYPMTRITYNIIMEAYGRAGMVDQMEETWKRM 271

Query: 495 IDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIK 554
               VKP+      +LS         +V KV+   +  +    A  N   D     +N  
Sbjct: 272 KAEFVKPNSSTFCSMLSAYGRHGYWHNVEKVMRQARYFDAADTAVYNAAIDAFQRAQNF- 330

Query: 555 EEFRNVIKDTEVDARRP 571
           E+   + ++ ++    P
Sbjct: 331 EDMEKIFEEMKLKGHAP 347



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/210 (21%), Positives = 99/210 (47%), Gaps = 2/210 (0%)

Query: 177 IKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCN 236
           +++ N+ P +T+ +N  ++      +   +EQ    ++   ++ D +T +++I+      
Sbjct: 166 MEANNVAP-DTVTWNTLIRVFGLNCKIPEMEQAYEGLLRQGLQPDMVTLNSLISAYGTAG 224

Query: 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS 296
           LF++     + M +       +TY+ I++ Y ++G V+++   ++R  A   KP+   F 
Sbjct: 225 LFEKMESVTQYMQRYNYPMTRITYNIIMEAYGRAGMVDQMEETWKRMKAEFVKPNSSTFC 284

Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356
            +   +G  G +  +  V+++ +      +  VYN  ++A  +A        +F+EM   
Sbjct: 285 SMLSAYGRHGYWHNVEKVMRQARYFDA-ADTAVYNAAIDAFQRAQNFEDMEKIFEEMKLK 343

Query: 357 GLTPDEKTLTALIKIYGKARWAKDALELWE 386
           G  PD+ T + LI  Y + R    A +L E
Sbjct: 344 GHAPDDVTYSILIGAYERIRRVDKARDLQE 373



 Score = 48.5 bits (114), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 69/153 (45%), Gaps = 7/153 (4%)

Query: 203 FQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSA 262
           F+ +E +   M      +  ITY+ I+    R  + D+  E ++RM    + P+  T+ +
Sbjct: 226 FEKMESVTQYMQRYNYPMTRITYNIIMEAYGRAGMVDQMEETWKRMKAEFVKPNSSTFCS 285

Query: 263 ILDVYAKSG---KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMK 319
           +L  Y + G    VE+V+    R        D   ++     F  + +++ +  + +EMK
Sbjct: 286 MLSAYGRHGYWHNVEKVM----RQARYFDAADTAVYNAAIDAFQRAQNFEDMEKIFEEMK 341

Query: 320 SLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
             G  P+ V Y+ L+ A  +  +   AR L +E
Sbjct: 342 LKGHAPDDVTYSILIGAYERIRRVDKARDLQEE 374


>gi|152717462|dbj|BAF73723.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 153/328 (46%), Gaps = 12/328 (3%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + YN  + +     +F   E+L +EM+   I  + ITYS++I    + N  D A   F
Sbjct: 324 DVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMF 383

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
             M   G  P+ +T++ ++D Y  + ++++ + L      +G   D   ++ L   F   
Sbjct: 384 YLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLV 443

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES--------- 356
           GD +    +LQEM S G+ P++V  +TLL+ +   GK   A  +F  M +S         
Sbjct: 444 GDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHP 503

Query: 357 --GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
             G+ PD +T   LI          +A EL+E M       D I Y+++++       ++
Sbjct: 504 FNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLD 563

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
           EA ++F+ M    +  P+  ++T ++N Y   G VD+ +ELF EM   G+  N +    L
Sbjct: 564 EATQMFDSMGSKSF-SPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITL 622

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           I    K   I+  + +F   I  GV PD
Sbjct: 623 ICGFRKVGNINGALDIFQEMISSGVYPD 650



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 157/335 (46%), Gaps = 39/335 (11%)

Query: 205 LIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAIL 264
           L+  L  +M   +I  D  +++ +I C   C+    A+  F ++ K GL PD VT++ +L
Sbjct: 97  LVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLL 156

Query: 265 -----------------------------------DVYAKSGKVEEVLSLYERGVASGWK 289
                                              +   + G++ E ++L +R +  G +
Sbjct: 157 HGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQ 216

Query: 290 PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG-VQPNLVVYNTLLEAMGKAGKPGLARS 348
           P  I +  +     + GD      +L++M+ +  + PN+V+Y+ +++++ K G+   A++
Sbjct: 217 PTQITYGTIVDGMCKIGDTVSALDLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQN 276

Query: 349 LFDEMVESGLTPDEKTLTALIKIY-GKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
           LF EM E G+ PD  T  ++I  +    RW+ DA +L + M E K   D + YN L+N  
Sbjct: 277 LFTEMQEKGIFPDLFTYNSMIVGFCSSGRWS-DAEQLLQEMLERKISPDVVTYNALINAF 335

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
              G   EAE L+++M L     P+  +Y++M++ +     +D A  +F  M+  G + N
Sbjct: 336 VKEGKFFEAEELYDEM-LPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPN 394

Query: 468 VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           ++    LI     A+RIDD + +     + G+  D
Sbjct: 395 LITFNTLIDGYCGAKRIDDGMELLHEMTETGLVAD 429



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 145/315 (46%), Gaps = 10/315 (3%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
            + Y+  + SL    +    + L  EM    I  D  TY+++I        + +A +  +
Sbjct: 255 VVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQ 314

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
            M +  + PD VTY+A+++ + K GK  E   LY+  +  G  P+ I +S +   F +  
Sbjct: 315 EMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQN 374

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
             D   ++   M + G  PNL+ +NTL++    A +      L  EM E+GL  D  T  
Sbjct: 375 RLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYN 434

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
            LI  +        AL+L + M  +    D +  +TLL+   D G +++A  +F+ M+ S
Sbjct: 435 TLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKS 494

Query: 427 ----------DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
                     +  +PD  +Y  +++   + G    A EL+EEM   G+  + +  + +I 
Sbjct: 495 KKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMID 554

Query: 477 CLGKARRIDDLVRVF 491
            L K  R+D+  ++F
Sbjct: 555 GLCKQSRLDEATQMF 569



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 152/309 (49%), Gaps = 10/309 (3%)

Query: 192 VTMKSLRFG--RQFQLIEQLA--NEMVSNEIELDNITYSTIITCAKRCNLFD--EAIEWF 245
           VT  +L  G  R+ +++E +A  + M+ + ++   ITY TI+     C + D   A++  
Sbjct: 185 VTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVD--GMCKIGDTVSALDLL 242

Query: 246 ERMYK-TGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
            +M + + ++P+ V YSAI+D   K G+  +  +L+      G  PD   ++ +   F  
Sbjct: 243 RKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCS 302

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
           SG +     +LQEM    + P++V YN L+ A  K GK   A  L+DEM+  G+ P+  T
Sbjct: 303 SGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTIT 362

Query: 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
            +++I  + K      A  ++  M       + I +NTL++       +++   L  +M 
Sbjct: 363 YSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMT 422

Query: 425 LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484
            +     D  +Y  +++ +   G+++ A++L +EM   G+  +++ C  L+  L    ++
Sbjct: 423 ETGLV-ADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKL 481

Query: 485 DDLVRVFGV 493
            D + +F V
Sbjct: 482 KDALEMFKV 490



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/368 (23%), Positives = 162/368 (44%), Gaps = 7/368 (1%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           F  I    L P + + +N  +  L    +      L ++M       + +T++T++    
Sbjct: 137 FGKITKLGLHP-DVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLC 195

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER-GVASGWKPDP 292
           R     EA+   +RM + GL P ++TY  I+D   K G     L L  +    S   P+ 
Sbjct: 196 REGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKIGDTVSALDLLRKMEEISHIIPNV 255

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           + +S +     + G +   + +  EM+  G+ P+L  YN+++     +G+   A  L  E
Sbjct: 256 VIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQE 315

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M+E  ++PD  T  ALI  + K     +A EL++ M       + I Y+++++       
Sbjct: 316 MLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNR 375

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
           ++ AE +F  M  +  C P+  ++  +++ Y     +D+ +EL  EM+E G+  +     
Sbjct: 376 LDAAEHMFYLMA-TKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYN 434

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETS--EDVGKVITCLQ 530
            LI        ++  + +    I  G+ PD   C  LL    LC+    +D  ++   +Q
Sbjct: 435 TLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLD--GLCDNGKLKDALEMFKVMQ 492

Query: 531 QANPKLVA 538
           ++   L A
Sbjct: 493 KSKKDLDA 500



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 63/265 (23%), Positives = 121/265 (45%)

Query: 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
            ++AI+ F  M ++  +P  V +  ++ V  +  + + V+SLY++      + D  +F++
Sbjct: 60  LEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTI 119

Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
           L K F              ++  LG+ P++V +NTLL  +    +   A +LF +M E+ 
Sbjct: 120 LIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETT 179

Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417
             P+  T T L+    +     +A+ L +RM E+      I Y T+++    IG    A 
Sbjct: 180 CRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKIGDTVSAL 239

Query: 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
            L   M+   +  P+   Y+A+++     G   +A  LF EM E G+  ++     +I  
Sbjct: 240 DLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVG 299

Query: 478 LGKARRIDDLVRVFGVSIDRGVKPD 502
              + R  D  ++    ++R + PD
Sbjct: 300 FCSSGRWSDAEQLLQEMLERKISPD 324



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 90/183 (49%), Gaps = 5/183 (2%)

Query: 216 NEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEE 275
           N +E D  TY+ +I+       F EA E +E M   G++PD +TYS+++D   K  +++E
Sbjct: 505 NGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDE 564

Query: 276 VLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLE 335
              +++   +  + P+ + F+ L   + ++G  D    +  EM   G+  N + Y TL+ 
Sbjct: 565 ATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIC 624

Query: 336 AMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN-KWP 394
              K G    A  +F EM+ SG+ PD  T+  ++       W+K+ L+    M E  +  
Sbjct: 625 GFRKVGNINGALDIFQEMISSGVYPDTITIRNML----TGLWSKEELKRAVAMLEKLQMS 680

Query: 395 MDF 397
           MD 
Sbjct: 681 MDL 683



 Score = 69.7 bits (169), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 74/148 (50%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN+ +  L    +F   E+L  EM    I  D ITYS++I    + +  DEA + F+ M 
Sbjct: 514 YNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMG 573

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
                P+ VT++ +++ Y K+G+V++ L L+      G   + I +  L   F + G+ +
Sbjct: 574 SKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNIN 633

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
           G   + QEM S GV P+ +    +L  +
Sbjct: 634 GALDIFQEMISSGVYPDTITIRNMLTGL 661



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 103/255 (40%), Gaps = 17/255 (6%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           +T  YN  +              L  EM+S+ +  D +T  T++          +A+E F
Sbjct: 429 DTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMF 488

Query: 246 ERMYKT-----------GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIA 294
           + M K+           G+ PD  TY+ ++      GK  E   LYE     G  PD I 
Sbjct: 489 KVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTIT 548

Query: 295 FSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMV 354
           +S +     +    D    +   M S    PN+V + TL+    KAG+      LF EM 
Sbjct: 549 YSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMG 608

Query: 355 ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
             G+  +  T   LI  + K      AL++++ M  +    D I   T+ NM   +   E
Sbjct: 609 RRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTI---TIRNMLTGLWSKE 665

Query: 415 EAER---LFEDMKLS 426
           E +R   + E +++S
Sbjct: 666 ELKRAVAMLEKLQMS 680


>gi|357444525|ref|XP_003592540.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481588|gb|AES62791.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 507

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/365 (24%), Positives = 166/365 (45%), Gaps = 37/365 (10%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           FF W + Q  F   T  ++  +++L   RQF++I  L +EM   ++ L+  T+S I    
Sbjct: 106 FFRWAEKQQGFNHNTEIFHALIEALGKIRQFKMIWNLVDEMKQRKL-LNGDTFSLIARRY 164

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG-KVEEVLSLYERGVASGWKPD 291
            R  +  EA++ FERM K GL P    ++ ++DV  KS   VE+   L+++      +P+
Sbjct: 165 VRAKVIKEALKTFERMEKYGLKPQISDFNKLIDVLCKSKFHVEKAQELFDKMRQWNLEPN 224

Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
             ++++L + + +  +   +  V +EMK  G QP++V Y  ++ A  KA K   A  ++ 
Sbjct: 225 LKSYTILIEGWSQQQNLLKVDEVCREMKDDGFQPDVVTYGIIINAYCKAKKYDEAIGIYH 284

Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM----- 406
           +M+   + P        I   G      +A E +E+ + + +P +   YN +++      
Sbjct: 285 DMLSKNVNPSPHIYCTFITGLGNGSRMDEAFEFFEKSKASGFPPEAPTYNAVVSAYCWSM 344

Query: 407 ----------------------CADIGLV--------EEAERLFEDMKLSDYCKPDNYSY 436
                                   DI LV        +EA  +F+ M     C+P   +Y
Sbjct: 345 RIDDAYRIVGEMKELGIGPNARTYDIILVHLIKGGRTKEAYSVFQRMSSETGCEPSVSTY 404

Query: 437 TAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496
             M+ ++ +   +D A+ ++ EM + G+   +   + LI  L    ++DD  R F   +D
Sbjct: 405 AIMVRMFCNENQLDMAMVVWNEMKDKGILPGIHMFSTLIISLCHENKLDDACRYFQQMLD 464

Query: 497 RGVKP 501
            G++P
Sbjct: 465 VGIRP 469



 Score = 86.3 bits (212), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 58/259 (22%), Positives = 118/259 (45%), Gaps = 4/259 (1%)

Query: 206 IEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
           ++++  EM  +  + D +TY  II    +   +DEAI  +  M    + P    Y   + 
Sbjct: 244 VDEVCREMKDDGFQPDVVTYGIIINAYCKAKKYDEAIGIYHDMLSKNVNPSPHIYCTFIT 303

Query: 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325
                 +++E    +E+  ASG+ P+   ++ +   +  S   D    ++ EMK LG+ P
Sbjct: 304 GLGNGSRMDEAFEFFEKSKASGFPPEAPTYNAVVSAYCWSMRIDDAYRIVGEMKELGIGP 363

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEM-VESGLTPDEKTLTALIKIYGKARWAKDALEL 384
           N   Y+ +L  + K G+   A S+F  M  E+G  P   T   +++++        A+ +
Sbjct: 364 NARTYDIILVHLIKGGRTKEAYSVFQRMSSETGCEPSVSTYAIMVRMFCNENQLDMAMVV 423

Query: 385 WERMRENKWPMDFILYNTL-LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIY 443
           W  M++        +++TL +++C +  L ++A R F+ M L    +P    ++A     
Sbjct: 424 WNEMKDKGILPGIHMFSTLIISLCHENKL-DDACRYFQQM-LDVGIRPTANMFSAFKRAL 481

Query: 444 GSGGNVDNAIELFEEMSEL 462
            + G  +  I   +++ +L
Sbjct: 482 MAAGMENTVIHFAKKVDKL 500


>gi|302768589|ref|XP_002967714.1| hypothetical protein SELMODRAFT_63558 [Selaginella moellendorffii]
 gi|300164452|gb|EFJ31061.1| hypothetical protein SELMODRAFT_63558 [Selaginella moellendorffii]
          Length = 384

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/326 (28%), Positives = 148/326 (45%), Gaps = 6/326 (1%)

Query: 241 AIEWFERMYKTGLMPDEVTYSAILDVYAKS-GKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           A   F RM K G     VTY+ I+  Y +   K++  L L E    SG KPD I ++ L 
Sbjct: 1   ACSLFYRMMKDGCEATVVTYTVIIHGYLRQKSKLDHALRLLEVMKESGKKPDEILYNCLV 60

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
                SG  +    +L +MK   V  NLV Y  L++     G+    R LF EM + G +
Sbjct: 61  NGLVNSGRLEAAEKILDDMKRDKVSANLVTYTNLIKEYANTGRLQDCRKLFQEMKDKGES 120

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
           P+  T  ALI+ YG+    K+ALEL++ M       D   YN  + M    GL+E+ ERL
Sbjct: 121 PNSWTYNALIQGYGRKGLFKEALELYDEMDGVGCAKDVHTYNIAIAMYGKRGLLEDMERL 180

Query: 420 FEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479
            ++M       PD  +Y  +L++Y        A E+  EM+E G   N+     ++    
Sbjct: 181 LDEMDTKG-VPPDQVTYNTLLDVYAKKSYFVKAHEILREMTEAGYRPNIWTYNIMLSSAR 239

Query: 480 KARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLV 537
           K + + +  ++F     +GV P+      +LS+        +  K+   + +A   P ++
Sbjct: 240 KEQSVAEATQLFENLKSKGVVPNIVTYSAMLSLYGRHGLYTEAAKLWDEMIEAGCIPCII 299

Query: 538 AFLNLIEDNSTGFENIKEEFRNVIKD 563
           A+  LIE  S G   + +E     +D
Sbjct: 300 AYSGLIE--SYGHHGMYQEALACFQD 323



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 95/387 (24%), Positives = 176/387 (45%), Gaps = 17/387 (4%)

Query: 126 LFARKLND-CDNTEEAFLRAITEIPHQPTR-ENALLILNSLKFWQKSYFFFNWIKSQNLF 183
           LF R + D C+ T   +   I     Q ++ ++AL +L  +K   K              
Sbjct: 4   LFYRMMKDGCEATVVTYTVIIHGYLRQKSKLDHALRLLEVMKESGKK------------- 50

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           P E I YN  +  L    + +  E++ ++M  +++  + +TY+ +I          +  +
Sbjct: 51  PDE-ILYNCLVNGLVNSGRLEAAEKILDDMKRDKVSANLVTYTNLIKEYANTGRLQDCRK 109

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
            F+ M   G  P+  TY+A++  Y + G  +E L LY+     G   D   +++   M+G
Sbjct: 110 LFQEMKDKGESPNSWTYNALIQGYGRKGLFKEALELYDEMDGVGCAKDVHTYNIAIAMYG 169

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
           + G  + +  +L EM + GV P+ V YNTLL+   K      A  +  EM E+G  P+  
Sbjct: 170 KRGLLEDMERLLDEMDTKGVPPDQVTYNTLLDVYAKKSYFVKAHEILREMTEAGYRPNIW 229

Query: 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
           T   ++    K +   +A +L+E ++      + + Y+ +L++    GL  EA +L+++M
Sbjct: 230 TYNIMLSSARKEQSVAEATQLFENLKSKGVVPNIVTYSAMLSLYGRHGLYTEAAKLWDEM 289

Query: 424 KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483
            +   C P   +Y+ ++  YG  G    A+  F++M + G+  +    T L+   GKA R
Sbjct: 290 -IEAGCIPCIIAYSGLIESYGHHGMYQEALACFQDMRKSGIVPDTKIYTALMDAYGKAGR 348

Query: 484 IDDLVRVFGVSIDRGVKPDDRLCGCLL 510
             +   ++      G  PD    G L+
Sbjct: 349 CREAELLYFEMTKEGFVPDGITYGILV 375



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 135/283 (47%), Gaps = 1/283 (0%)

Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS 261
           + Q   +L  EM       ++ TY+ +I    R  LF EA+E ++ M   G   D  TY+
Sbjct: 103 RLQDCRKLFQEMKDKGESPNSWTYNALIQGYGRKGLFKEALELYDEMDGVGCAKDVHTYN 162

Query: 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
             + +Y K G +E++  L +     G  PD + ++ L  ++ +   +     +L+EM   
Sbjct: 163 IAIAMYGKRGLLEDMERLLDEMDTKGVPPDQVTYNTLLDVYAKKSYFVKAHEILREMTEA 222

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
           G +PN+  YN +L +  K      A  LF+ +   G+ P+  T +A++ +YG+     +A
Sbjct: 223 GYRPNIWTYNIMLSSARKEQSVAEATQLFENLKSKGVVPNIVTYSAMLSLYGRHGLYTEA 282

Query: 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
            +LW+ M E       I Y+ L+      G+ +EA   F+DM+ S    PD   YTA+++
Sbjct: 283 AKLWDEMIEAGCIPCIIAYSGLIESYGHHGMYQEALACFQDMRKSGIV-PDTKIYTALMD 341

Query: 442 IYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484
            YG  G    A  L+ EM++ G   + +    L++    A R+
Sbjct: 342 AYGKAGRCREAELLYFEMTKEGFVPDGITYGILVRAFANAGRL 384



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 83/322 (25%), Positives = 146/322 (45%), Gaps = 11/322 (3%)

Query: 213 MVSNEIELDNITYSTIITCAKRC-NLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG 271
           M+ +  E   +TY+ II    R  +  D A+   E M ++G  PDE+ Y+ +++    SG
Sbjct: 8   MMKDGCEATVVTYTVIIHGYLRQKSKLDHALRLLEVMKESGKKPDEILYNCLVNGLVNSG 67

Query: 272 KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYN 331
           ++E    + +         + + ++ L K +  +G     R + QEMK  G  PN   YN
Sbjct: 68  RLEAAEKILDDMKRDKVSANLVTYTNLIKEYANTGRLQDCRKLFQEMKDKGESPNSWTYN 127

Query: 332 TLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN 391
            L++  G+ G    A  L+DEM   G   D  T    I +YGK    +D   L + M   
Sbjct: 128 ALIQGYGRKGLFKEALELYDEMDGVGCAKDVHTYNIAIAMYGKRGLLEDMERLLDEMDTK 187

Query: 392 KWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDN 451
             P D + YNTLL++ A      +A  +  +M  + Y +P+ ++Y  ML+      +V  
Sbjct: 188 GVPPDQVTYNTLLDVYAKKSYFVKAHEILREMTEAGY-RPNIWTYNIMLSSARKEQSVAE 246

Query: 452 AIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
           A +LFE +   GV  N++  + ++   G+     +  +++   I+ G  P      C+++
Sbjct: 247 ATQLFENLKSKGVVPNIVTYSAMLSLYGRHGLYTEAAKLWDEMIEAGCIP------CIIA 300

Query: 512 VVSLCETSEDVG---KVITCLQ 530
              L E+    G   + + C Q
Sbjct: 301 YSGLIESYGHHGMYQEALACFQ 322



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 112/224 (50%), Gaps = 4/224 (1%)

Query: 190 YNVTMKSLRFGRQFQL--IEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           YN+ +    +G++  L  +E+L +EM +  +  D +TY+T++    + + F +A E    
Sbjct: 161 YNIAIA--MYGKRGLLEDMERLLDEMDTKGVPPDQVTYNTLLDVYAKKSYFVKAHEILRE 218

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M + G  P+  TY+ +L    K   V E   L+E   + G  P+ + +S +  ++G  G 
Sbjct: 219 MTEAGYRPNIWTYNIMLSSARKEQSVAEATQLFENLKSKGVVPNIVTYSAMLSLYGRHGL 278

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
           Y     +  EM   G  P ++ Y+ L+E+ G  G    A + F +M +SG+ PD K  TA
Sbjct: 279 YTEAAKLWDEMIEAGCIPCIIAYSGLIESYGHHGMYQEALACFQDMRKSGIVPDTKIYTA 338

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411
           L+  YGKA   ++A  L+  M +  +  D I Y  L+   A+ G
Sbjct: 339 LMDAYGKAGRCREAELLYFEMTKEGFVPDGITYGILVRAFANAG 382



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 95/192 (49%)

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           P + + YN  +        F    ++  EM       +  TY+ +++ A++     EA +
Sbjct: 190 PPDQVTYNTLLDVYAKKSYFVKAHEILREMTEAGYRPNIWTYNIMLSSARKEQSVAEATQ 249

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
            FE +   G++P+ VTYSA+L +Y + G   E   L++  + +G  P  IA+S L + +G
Sbjct: 250 LFENLKSKGVVPNIVTYSAMLSLYGRHGLYTEAAKLWDEMIEAGCIPCIIAYSGLIESYG 309

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
             G Y       Q+M+  G+ P+  +Y  L++A GKAG+   A  L+ EM + G  PD  
Sbjct: 310 HHGMYQEALACFQDMRKSGIVPDTKIYTALMDAYGKAGRCREAELLYFEMTKEGFVPDGI 369

Query: 364 TLTALIKIYGKA 375
           T   L++ +  A
Sbjct: 370 TYGILVRAFANA 381



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 73/153 (47%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN+ + S R  +      QL   + S  +  + +TYS +++   R  L+ EA + ++ M 
Sbjct: 231 YNIMLSSARKEQSVAEATQLFENLKSKGVVPNIVTYSAMLSLYGRHGLYTEAAKLWDEMI 290

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
           + G +P  + YS +++ Y   G  +E L+ ++    SG  PD   ++ L   +G++G   
Sbjct: 291 EAGCIPCIIAYSGLIESYGHHGMYQEALACFQDMRKSGIVPDTKIYTALMDAYGKAGRCR 350

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
               +  EM   G  P+ + Y  L+ A   AG+
Sbjct: 351 EAELLYFEMTKEGFVPDGITYGILVRAFANAGR 383



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 117/289 (40%), Gaps = 47/289 (16%)

Query: 346 ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD-ALELWERMRENKWPMDFILYNTLL 404
           A SLF  M++ G      T T +I  Y + +   D AL L E M+E+    D ILYN L+
Sbjct: 1   ACSLFYRMMKDGCEATVVTYTVIIHGYLRQKSKLDHALRLLEVMKESGKKPDEILYNCLV 60

Query: 405 NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
           N   + G +E AE++ +DMK  D    +  +YT ++  Y + G + +  +LF+EM + G 
Sbjct: 61  NGLVNSGRLEAAEKILDDMK-RDKVSANLVTYTNLIKEYANTGRLQDCRKLFQEMKDKGE 119

Query: 465 AINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGK 524
           + N      LIQ  G+                          G     + L +  + VG 
Sbjct: 120 SPNSWTYNALIQGYGRK-------------------------GLFKEALELYDEMDGVG- 153

Query: 525 VITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRP---FCNCLIDICR 581
              C +  +   +A          G   + E+   ++ + +     P     N L+D+  
Sbjct: 154 ---CAKDVHTYNIAI------AMYGKRGLLEDMERLLDEMDTKGVPPDQVTYNTLLDVYA 204

Query: 582 NRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALE 630
            ++   +AHE+L   T  G  P +       W+ ++   S    Q+  E
Sbjct: 205 KKSYFVKAHEILREMTEAGYRPNI-------WTYNIMLSSARKEQSVAE 246


>gi|296083846|emb|CBI24234.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 154/321 (47%), Gaps = 1/321 (0%)

Query: 191 NVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYK 250
           N+ + +L   ++ +  +   ++M    +  D +TY+T+I    R  L +EA E  + M  
Sbjct: 101 NIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSG 160

Query: 251 TGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDG 310
            GL P   TY+AI++   K+GK      + +  +  G  PD   +++L      + +   
Sbjct: 161 KGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMD 220

Query: 311 IRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK 370
              +  EM S GV P+LV ++ L+  + K G    A   F +M  +GL PD    T LI 
Sbjct: 221 AERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIG 280

Query: 371 IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCK 430
            + +     +AL++ + M E    +D + YNT+LN      ++ EA+ LF +M       
Sbjct: 281 GFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMT-ERGVF 339

Query: 431 PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRV 490
           PD Y++T ++N Y   GN++ A+ LFE M +  +  +V+    LI    K   ++ +  +
Sbjct: 340 PDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNEL 399

Query: 491 FGVSIDRGVKPDDRLCGCLLS 511
           +   I R + P+    G L++
Sbjct: 400 WNDMISRRIYPNHISYGILIN 420



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 155/317 (48%), Gaps = 9/317 (2%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIIT-CAKRCNLFDEAIEWFERM 248
           YN  +  L    ++   + + +EM+   +  D  TY+ ++  C +  N+ D A   F+ M
Sbjct: 170 YNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMD-AERIFDEM 228

Query: 249 YKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY 308
              G++PD V++SA++ + +K+G +++ L  +     +G  PD + +++L   F  +G  
Sbjct: 229 PSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVM 288

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
                V  EM   G   ++V YNT+L  + K      A  LF EM E G+ PD  T T L
Sbjct: 289 SEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTL 348

Query: 369 IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428
           I  Y K      A+ L+E M +     D + YNTL++       +E+   L+ DM +S  
Sbjct: 349 INGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDM-ISRR 407

Query: 429 CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ--C-LGKARRID 485
             P++ SY  ++N Y + G V  A  L++EM E G    ++ C  +++  C  G A + D
Sbjct: 408 IYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKAD 467

Query: 486 DLVRVFGVSIDRGVKPD 502
           + +      + +G+ PD
Sbjct: 468 EFLSNM---LLKGIVPD 481



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 138/295 (46%), Gaps = 1/295 (0%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           ++  E+V + ++++  T + +I    +    +    +   M + G+ PD VTY+ +++ Y
Sbjct: 83  EIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAY 142

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            + G +EE   L +     G KP    ++ +     ++G Y   + VL EM  +G+ P+ 
Sbjct: 143 CRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDT 202

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
             YN LL    +      A  +FDEM   G+ PD  + +ALI +  K      AL+ +  
Sbjct: 203 ATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRD 262

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           M+      D ++Y  L+      G++ EA ++ ++M L   C  D  +Y  +LN      
Sbjct: 263 MKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEM-LEQGCVLDVVTYNTILNGLCKEK 321

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            +  A ELF EM+E GV  +    T LI    K   ++  V +F + I R +KPD
Sbjct: 322 MLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPD 376



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 151/335 (45%), Gaps = 6/335 (1%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLA--NEMVSNEIELDNITYSTIIT 230
           +F  +K+  L P + + Y + +    F R   + E L   +EM+     LD +TY+TI+ 
Sbjct: 259 YFRDMKNAGLAP-DNVIYTILIGG--FCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILN 315

Query: 231 CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
              +  +  EA E F  M + G+ PD  T++ +++ Y+K G + + ++L+E  +    KP
Sbjct: 316 GLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKP 375

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
           D + ++ L   F +  + + +  +  +M S  + PN + Y  L+      G    A  L+
Sbjct: 376 DVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLW 435

Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
           DEMVE G      T   ++K Y +A  A  A E    M       D I YNTL+N     
Sbjct: 436 DEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKE 495

Query: 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG 470
             ++ A  L   M+ S    PD  +Y  +LN +   G +  A  +  +M E GV  +   
Sbjct: 496 ENMDRAFALVNKMENSGLL-PDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRST 554

Query: 471 CTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRL 505
            T LI        + +  RV    + RG  PDD+ 
Sbjct: 555 YTSLINGHVTQNNLKEAFRVHDEMLQRGFVPDDKF 589



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 128/264 (48%), Gaps = 1/264 (0%)

Query: 239 DEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
           D A E ++ + ++G+  +  T + +++   K+ K+E   S        G  PD + ++ L
Sbjct: 79  DLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTL 138

Query: 299 GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
              +   G  +    ++  M   G++P +  YN ++  + K GK   A+ + DEM++ G+
Sbjct: 139 INAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGM 198

Query: 359 TPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAER 418
           +PD  T   L+    +     DA  +++ M       D + ++ L+ + +  G +++A +
Sbjct: 199 SPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALK 258

Query: 419 LFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL 478
            F DMK +    PDN  YT ++  +   G +  A+++ +EM E G  ++V+    ++  L
Sbjct: 259 YFRDMKNAGL-APDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGL 317

Query: 479 GKARRIDDLVRVFGVSIDRGVKPD 502
            K + + +   +F    +RGV PD
Sbjct: 318 CKEKMLSEADELFTEMTERGVFPD 341



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 97/212 (45%), Gaps = 1/212 (0%)

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
           +P+ F +L + + ++          + +KS G+  ++   N+LL  + K G   LA  ++
Sbjct: 26  NPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIY 85

Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
            E+V SG+  +  TL  +I    K +  ++       M E     D + YNTL+N     
Sbjct: 86  QEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQ 145

Query: 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG 470
           GL+EEA  L + M      KP  ++Y A++N     G    A  + +EM ++G++ +   
Sbjct: 146 GLLEEAFELMDSMS-GKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTAT 204

Query: 471 CTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
              L+    +   + D  R+F     +GV PD
Sbjct: 205 YNILLVECCRNDNMMDAERIFDEMPSQGVVPD 236


>gi|449461475|ref|XP_004148467.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Cucumis sativus]
          Length = 775

 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 100/399 (25%), Positives = 189/399 (47%), Gaps = 16/399 (4%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           WQ ++  FN      L  + T  +N  +  L    +      L +E+++  I  + ++Y+
Sbjct: 349 WQNAFTMFNDALESGLANVFT--FNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYN 406

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
            II    R +  + A + ++ M   G  P+ VT++ ++D Y K G +E   S++ R   +
Sbjct: 407 NIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHRMKDA 466

Query: 287 GWKPDPIAFSVLGKMFGESG-DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGL 345
              P      ++ K   ++G  ++G R +  +  S G  P  + YNT+++   K G   L
Sbjct: 467 NILPTDTTLGIIIKGLCKAGRSFEG-RDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINL 525

Query: 346 ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405
           A +++ EM E G+TP   T T+LI  + K      AL+L   M+     MD   Y TL++
Sbjct: 526 ASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLID 585

Query: 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
                  ++ A  L  +++ +    P+ + Y +M+  + +  NV+ AI+L+++M   G+ 
Sbjct: 586 GFCKRRDMKSAHELLNELRGAGL-SPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIP 644

Query: 466 INVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETS--EDVG 523
            ++   T LI  L K+ R+     +    + +G+ PDDR    L++   LC     E+  
Sbjct: 645 CDLKTYTSLIDGLLKSGRLLYASDIHTEMLSKGILPDDRAHTVLIN--GLCNKGQFENAR 702

Query: 524 KVITCLQQAN--PKLVAFLNLIEDNSTGFE--NIKEEFR 558
           K++  +   N  P ++ +  LI  +   F+  N++E FR
Sbjct: 703 KILEDMNGKNMIPSVLIYNTLIAGH---FKEGNLQEAFR 738



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 141/326 (43%), Gaps = 34/326 (10%)

Query: 212 EMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG 271
           EM+ N    + +T++ ++    +    + A   F RM    ++P + T   I+    K+G
Sbjct: 427 EMLDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGIIIKGLCKAG 486

Query: 272 KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYN 331
           +  E   L+ + V+ G+ P  + ++ +   F + G+ +    V +EM  +G+ P+ V Y 
Sbjct: 487 RSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYT 546

Query: 332 TLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN 391
           +L++   K     LA  L ++M   GL  D K    LI  + K R  K A EL   +R  
Sbjct: 547 SLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGA 606

Query: 392 KWPMDFILYNTLLNMCADIGLVEEAERLFEDM---------------------------- 423
               +  +YN+++    ++  VEEA  L++ M                            
Sbjct: 607 GLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYA 666

Query: 424 ------KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
                  LS    PD+ ++T ++N   + G  +NA ++ E+M+   +  +V+    LI  
Sbjct: 667 SDIHTEMLSKGILPDDRAHTVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAG 726

Query: 478 LGKARRIDDLVRVFGVSIDRGVKPDD 503
             K   + +  R+    +DRG+ PD+
Sbjct: 727 HFKEGNLQEAFRLHDEMLDRGLVPDN 752



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/304 (24%), Positives = 142/304 (46%), Gaps = 6/304 (1%)

Query: 209 LANEMVSNEIELDNITYSTIIT-CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           L NE+  + +  + +TYS +I  C K  N+ ++A E++  M   G+     + ++IL+ Y
Sbjct: 285 LVNEISESGLVPNKVTYSVLIDGCCKNGNI-EKAFEFYSEMKTKGIRSSVYSLNSILEGY 343

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            K    +   +++   + SG   +   F+ L     + G  +    +  E+ + G+ PN+
Sbjct: 344 LKCQSWQNAFTMFNDALESGL-ANVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNV 402

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
           V YN ++    +      A  ++ EM+++G TP+  T T L+  Y K    ++A  ++ R
Sbjct: 403 VSYNNIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHR 462

Query: 388 MRE-NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
           M++ N  P D  L   +  +C   G   E   LF    +S    P    Y  +++ +   
Sbjct: 463 MKDANILPTDTTLGIIIKGLCK-AGRSFEGRDLFNKF-VSQGFVPTCMPYNTIIDGFIKE 520

Query: 447 GNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLC 506
           GN++ A  ++ EM E+G+  + +  T LI    K   ID  +++      +G+K D +  
Sbjct: 521 GNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAY 580

Query: 507 GCLL 510
           G L+
Sbjct: 581 GTLI 584



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 94/182 (51%), Gaps = 2/182 (1%)

Query: 201 RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTY 260
           R  +   +L NE+    +  +   Y+++IT  K  N  +EAI+ +++M   G+  D  TY
Sbjct: 591 RDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTY 650

Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
           ++++D   KSG++     ++   ++ G  PD  A +VL       G ++  R +L++M  
Sbjct: 651 TSLIDGLLKSGRLLYASDIHTEMLSKGILPDDRAHTVLINGLCNKGQFENARKILEDMNG 710

Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI--KIYGKARWA 378
             + P++++YNTL+    K G    A  L DEM++ GL PD  T   L+  K  G   ++
Sbjct: 711 KNMIPSVLIYNTLIAGHFKEGNLQEAFRLHDEMLDRGLVPDNITYDILVNGKFKGDGNFS 770

Query: 379 KD 380
           +D
Sbjct: 771 RD 772



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 72/309 (23%), Positives = 129/309 (41%), Gaps = 37/309 (11%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           + ++  F+ +K  N+ P +T    +     + GR F+    L N+ VS       + Y+T
Sbjct: 454 ENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEG-RDLFNKFVSQGFVPTCMPYNT 512

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           II    +    + A   +  M + G+ P  VTY++++D + K   ++  L L       G
Sbjct: 513 IIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKG 572

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNT--------------- 332
            K D  A+  L   F +  D      +L E++  G+ PN  +YN+               
Sbjct: 573 LKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEAI 632

Query: 333 --------------------LLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIY 372
                               L++ + K+G+   A  +  EM+  G+ PD++  T LI   
Sbjct: 633 DLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDIHTEMLSKGILPDDRAHTVLINGL 692

Query: 373 GKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPD 432
                 ++A ++ E M         ++YNTL+      G ++EA RL ++M L     PD
Sbjct: 693 CNKGQFENARKILEDMNGKNMIPSVLIYNTLIAGHFKEGNLQEAFRLHDEM-LDRGLVPD 751

Query: 433 NYSYTAMLN 441
           N +Y  ++N
Sbjct: 752 NITYDILVN 760



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 71/304 (23%), Positives = 136/304 (44%), Gaps = 8/304 (2%)

Query: 218 IELDNITYSTIIT--CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEE 275
           +ELD   YS  +   C K  + +  A+     M   G +P E T+++++    K G V E
Sbjct: 189 VELDQEAYSIFVHLLCLKPNSGY--ALSLLREMRAAGWIPPEGTFTSVITACVKEGNVAE 246

Query: 276 VLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLE 335
            L L +  V  G   +    + L K +   G+      ++ E+   G+ PN V Y+ L++
Sbjct: 247 ALRLKDDMVNCGKSMNLAVATSLMKGYCMQGNLRSALVLVNEISESGLVPNKVTYSVLID 306

Query: 336 AMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPM 395
              K G    A   + EM   G+     +L ++++ Y K +  ++A  ++    E+    
Sbjct: 307 GCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSILEGYLKCQSWQNAFTMFNDALESGLAN 366

Query: 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIEL 455
            F  +NTLL+     G + EA  L++++ ++    P+  SY  ++  +    N++ A ++
Sbjct: 367 VFT-FNTLLSWLCKEGKMNEACNLWDEV-IAKGISPNVVSYNNIILGHCRKDNINAACKV 424

Query: 456 FEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSL 515
           ++EM + G   N +  T L+    K   I++   +F    D  + P D   G ++    L
Sbjct: 425 YKEMLDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGIIIK--GL 482

Query: 516 CETS 519
           C+  
Sbjct: 483 CKAG 486


>gi|18394846|ref|NP_564110.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174883|sp|Q9LN22.1|PPR54_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g20300, mitochondrial; Flags: Precursor
 gi|9558596|gb|AAF88159.1|AC026234_10 Contains similarity to a hypothetical protein T3P18.15 gi|5454201
           from Arabidopsis thaliana BAC T3P18 gb|AC005698 and
           contains multiple PPR PF|01535 repeats [Arabidopsis
           thaliana]
 gi|17386104|gb|AAL38598.1|AF446865_1 At1g20300/F14O10_8 [Arabidopsis thaliana]
 gi|15450347|gb|AAK96467.1| At1g20300/F14O10_8 [Arabidopsis thaliana]
 gi|332191838|gb|AEE29959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 537

 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/337 (23%), Positives = 167/337 (49%), Gaps = 5/337 (1%)

Query: 168 QKSYFFFNWIKSQNLFPMETIF-YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
            +S  FFNW  S++ +  ++   YN  +      RQF L   L + M S  +E+   T++
Sbjct: 131 HQSLAFFNWATSRDDYDHKSPHPYNEMIDLSGKVRQFDLAWHLIDLMKSRNVEISIETFT 190

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
            +I    R  L  EA+  F RM   G +PD++ +S ++   ++  +  E  S ++  +  
Sbjct: 191 ILIRRYVRAGLASEAVHCFNRMEDYGCVPDKIAFSIVISNLSRKRRASEAQSFFD-SLKD 249

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
            ++PD I ++ L + +  +G+      V +EMK  G++PN+  Y+ +++A+ + G+   A
Sbjct: 250 RFEPDVIVYTNLVRGWCRAGEISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRA 309

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN- 405
             +F +M++SG  P+  T   L++++ KA   +  L+++ +M++     D I YN L+  
Sbjct: 310 HDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEA 369

Query: 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
            C D  L E A ++   M +   C+ +  ++  +        +V+ A  ++ +M E    
Sbjct: 370 HCRDENL-ENAVKVLNTM-IKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKCE 427

Query: 466 INVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            N +    L++    ++  D ++++     D+ V+P+
Sbjct: 428 PNTVTYNILMRMFVGSKSTDMVLKMKKEMDDKEVEPN 464



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 130/293 (44%), Gaps = 2/293 (0%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           FF+ +K +  F  + I Y   ++      +    E++  EM    IE +  TYS +I   
Sbjct: 243 FFDSLKDR--FEPDVIVYTNLVRGWCRAGEISEAEKVFKEMKLAGIEPNVYTYSIVIDAL 300

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            RC     A + F  M  +G  P+ +T++ ++ V+ K+G+ E+VL +Y +    G +PD 
Sbjct: 301 CRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCEPDT 360

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           I ++ L +      + +    VL  M     + N   +NT+   + K      A  ++ +
Sbjct: 361 ITYNFLIEAHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSK 420

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M+E+   P+  T   L++++  ++     L++ + M + +   +   Y  L+ M   +G 
Sbjct: 421 MMEAKCEPNTVTYNILMRMFVGSKSTDMVLKMKKEMDDKEVEPNVNTYRLLVTMFCGMGH 480

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
              A +LF++M       P    Y  +L      G +    EL E+M + G+ 
Sbjct: 481 WNNAYKLFKEMVEEKCLTPSLSLYEMVLAQLRRAGQLKKHEELVEKMIQKGLV 533



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 144/320 (45%), Gaps = 22/320 (6%)

Query: 257 EVTYSAILDVYAKSGKVEEVLSLYERGVASGW--------KPDPIAFSVLGKMFGESGDY 308
           +V+ S +  V  K G V   + L++      W           P  ++ +  + G+   +
Sbjct: 108 QVSPSVVRCVIEKCGSVRHGIPLHQSLAFFNWATSRDDYDHKSPHPYNEMIDLSGKVRQF 167

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
           D   +++  MKS  V+ ++  +  L+    +AG    A   F+ M + G  PD+   + +
Sbjct: 168 DLAWHLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHCFNRMEDYGCVPDKIAFSIV 227

Query: 369 IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428
           I    + R A +A   ++ +++   P D I+Y  L+      G + EAE++F++MKL+  
Sbjct: 228 ISNLSRKRRASEAQSFFDSLKDRFEP-DVIVYTNLVRGWCRAGEISEAEKVFKEMKLAGI 286

Query: 429 CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLV 488
            +P+ Y+Y+ +++     G +  A ++F +M + G A N +    L++   KA R + ++
Sbjct: 287 -EPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVL 345

Query: 489 RVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNST 548
           +V+      G +PD      L+      E  E+  KV+  + +            E N++
Sbjct: 346 QVYNQMKKLGCEPDTITYNFLIEAHCRDENLENAVKVLNTMIKKK---------CEVNAS 396

Query: 549 GFENIKEEFRNVIKDTEVDA 568
            F  I   FR + K  +V+ 
Sbjct: 397 TFNTI---FRYIEKKRDVNG 413


>gi|302820627|ref|XP_002991980.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
 gi|300140222|gb|EFJ06948.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
          Length = 509

 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 100/419 (23%), Positives = 194/419 (46%), Gaps = 24/419 (5%)

Query: 86  LLSKPKSTWVNPTKPRRSVLSLQRQKRSTYSYNPRVRDLKLFARKLNDCDNTEEAFLRAI 145
           LL + K+  + PT     +++     R     N   + L++F  ++ D     +AFL  +
Sbjct: 74  LLGEMKAAGITPT-----IVTFGSLIRKLCELNFTDKALQIF-HQMIDMKVKPDAFLYTV 127

Query: 146 TEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQL 205
             I H       L  +N L        +F  +      P + + Y V + SL    +++ 
Sbjct: 128 V-IGH-------LCKINKLDLAAS---YFERMVQSGCLP-DKVTYTVLVHSLFKACKWEQ 175

Query: 206 IEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
             Q+  EM+S     + +TY+T++    +    D+A+    R+  TG  P    YS ++D
Sbjct: 176 GHQIFEEMLSKGHSPELVTYATVVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLID 235

Query: 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325
              K  + +E   L+E  +A+G   D I ++       ++G  D  + V  +M   G  P
Sbjct: 236 GLCKHDRHDEARELFE--MAAGDVQDVIVYTSFISGLCKAGKLDEAKAVHVKMIEAGCAP 293

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
           + V YN ++ ++ K  +   A+ L D+ +E    P     T L+    K+R  ++A  + 
Sbjct: 294 DPVSYNVIIYSLCKDNRVSEAKELMDQAMERKCMPGVPVCTVLVDGLCKSRRVEEACVIL 353

Query: 386 ERMRE--NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIY 443
           ERM E  ++ P   + Y+ +++       +++A  + + M+ +  C PD  +YTA+++ +
Sbjct: 354 ERMLETGDRAP-SVVTYSAVIDGLCKADRLDDAYVVLQKMRRAG-CVPDVVTYTAIIDAF 411

Query: 444 GSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
              G +D A ELF+ M E G A++V+    LI+   +A ++D+ + +      RG++P+
Sbjct: 412 CKVGRLDEARELFQRMHERGCALDVVAYNILIRGYCRAAKVDEAIAMIEEMAGRGIQPN 470



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 143/324 (44%), Gaps = 7/324 (2%)

Query: 181 NLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDE 240
            LF  +   Y   ++      Q      L  EM +  I    +T+ ++I      N  D+
Sbjct: 46  TLFRPDDFTYGTLIRGFCKAEQIPQAVNLLGEMKAAGITPTIVTFGSLIRKLCELNFTDK 105

Query: 241 AIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGK 300
           A++ F +M    + PD   Y+ ++    K  K++   S +ER V SG  PD + ++VL  
Sbjct: 106 ALQIFHQMIDMKVKPDAFLYTVVIGHLCKINKLDLAASYFERMVQSGCLPDKVTYTVLVH 165

Query: 301 MFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTP 360
              ++  ++    + +EM S G  P LV Y T++    KAG+   A SL   +  +G +P
Sbjct: 166 SLFKACKWEQGHQIFEEMLSKGHSPELVTYATVVNGYCKAGRIDQALSLMRRLKGTGRSP 225

Query: 361 DEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLF 420
                + LI    K     +A EL+E    +    D I+Y + ++     G ++EA+ + 
Sbjct: 226 SGSLYSTLIDGLCKHDRHDEARELFEMAAGD--VQDVIVYTSFISGLCKAGKLDEAKAVH 283

Query: 421 EDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK 480
             M +   C PD  SY  ++        V  A EL ++  E      V  CT L+  L K
Sbjct: 284 VKM-IEAGCAPDPVSYNVIIYSLCKDNRVSEAKELMDQAMERKCMPGVPVCTVLVDGLCK 342

Query: 481 ARRIDDLVRVFGVSIDRGVKPDDR 504
           +RR+++      V ++R ++  DR
Sbjct: 343 SRRVEEAC----VILERMLETGDR 362



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 119/263 (45%), Gaps = 3/263 (1%)

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           EA   F+    T   PD+ TY  ++  + K+ ++ + ++L     A+G  P  + F  L 
Sbjct: 35  EAYRVFKDELVTLFRPDDFTYGTLIRGFCKAEQIPQAVNLLGEMKAAGITPTIVTFGSLI 94

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
           +   E    D    +  +M  + V+P+  +Y  ++  + K  K  LA S F+ MV+SG  
Sbjct: 95  RKLCELNFTDKALQIFHQMIDMKVKPDAFLYTVVIGHLCKINKLDLAASYFERMVQSGCL 154

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
           PD+ T T L+    KA   +   +++E M       + + Y T++N     G +++A  L
Sbjct: 155 PDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGHSPELVTYATVVNGYCKAGRIDQALSL 214

Query: 420 FEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479
              +K +    P    Y+ +++        D A ELFE  +  G   +V+  T  I  L 
Sbjct: 215 MRRLKGTGR-SPSGSLYSTLIDGLCKHDRHDEARELFEMAA--GDVQDVIVYTSFISGLC 271

Query: 480 KARRIDDLVRVFGVSIDRGVKPD 502
           KA ++D+   V    I+ G  PD
Sbjct: 272 KAGKLDEAKAVHVKMIEAGCAPD 294



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 92/170 (54%), Gaps = 3/170 (1%)

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           P+ T+  +   KS R      ++E++   + + +     +TYS +I    + +  D+A  
Sbjct: 331 PVCTVLVDGLCKSRRVEEACVILERM---LETGDRAPSVVTYSAVIDGLCKADRLDDAYV 387

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
             ++M + G +PD VTY+AI+D + K G+++E   L++R    G   D +A+++L + + 
Sbjct: 388 VLQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGCALDVVAYNILIRGYC 447

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
            +   D    +++EM   G+QPN+V  +T+++ + K  +   AR L ++M
Sbjct: 448 RAAKVDEAIAMIEEMAGRGIQPNVVSLSTIVDGLCKESRVEEARLLMEKM 497



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 112/253 (44%), Gaps = 7/253 (2%)

Query: 178 KSQNLFPM------ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITC 231
           +++ LF M      + I Y   +  L    +    + +  +M+      D ++Y+ II  
Sbjct: 245 EARELFEMAAGDVQDVIVYTSFISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYS 304

Query: 232 AKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWK-P 290
             + N   EA E  ++  +   MP     + ++D   KS +VEE   + ER + +G + P
Sbjct: 305 LCKDNRVSEAKELMDQAMERKCMPGVPVCTVLVDGLCKSRRVEEACVILERMLETGDRAP 364

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
             + +S +     ++   D    VLQ+M+  G  P++V Y  +++A  K G+   AR LF
Sbjct: 365 SVVTYSAVIDGLCKADRLDDAYVVLQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELF 424

Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
             M E G   D      LI+ Y +A    +A+ + E M       + +  +T+++     
Sbjct: 425 QRMHERGCALDVVAYNILIRGYCRAAKVDEAIAMIEEMAGRGIQPNVVSLSTIVDGLCKE 484

Query: 411 GLVEEAERLFEDM 423
             VEEA  L E M
Sbjct: 485 SRVEEARLLMEKM 497



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 110/242 (45%), Gaps = 1/242 (0%)

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
           + G   +  T +++L+V+   G   E   +++  + + ++PD   +  L + F ++    
Sbjct: 10  RPGFQHNTYTCNSLLEVFVNDGCHREAYRVFKDELVTLFRPDDFTYGTLIRGFCKAEQIP 69

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               +L EMK+ G+ P +V + +L+  + +      A  +F +M++  + PD    T +I
Sbjct: 70  QAVNLLGEMKAAGITPTIVTFGSLIRKLCELNFTDKALQIFHQMIDMKVKPDAFLYTVVI 129

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
               K      A   +ERM ++    D + Y  L++        E+  ++FE+M LS   
Sbjct: 130 GHLCKINKLDLAASYFERMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEM-LSKGH 188

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
            P+  +Y  ++N Y   G +D A+ L   +   G + +    + LI  L K  R D+   
Sbjct: 189 SPELVTYATVVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGLCKHDRHDEARE 248

Query: 490 VF 491
           +F
Sbjct: 249 LF 250



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 101/213 (47%), Gaps = 7/213 (3%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIIT---CAKRCNLFDEAI 242
           + + YNV + SL    +    ++L ++ +  +  +  +   T++    C  R    +EA 
Sbjct: 294 DPVSYNVIIYSLCKDNRVSEAKELMDQAMERKC-MPGVPVCTVLVDGLCKSR--RVEEAC 350

Query: 243 EWFERMYKTG-LMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKM 301
              ERM +TG   P  VTYSA++D   K+ ++++   + ++   +G  PD + ++ +   
Sbjct: 351 VILERMLETGDRAPSVVTYSAVIDGLCKADRLDDAYVVLQKMRRAGCVPDVVTYTAIIDA 410

Query: 302 FGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD 361
           F + G  D  R + Q M   G   ++V YN L+    +A K   A ++ +EM   G+ P+
Sbjct: 411 FCKVGRLDEARELFQRMHERGCALDVVAYNILIRGYCRAAKVDEAIAMIEEMAGRGIQPN 470

Query: 362 EKTLTALIKIYGKARWAKDALELWERMRENKWP 394
             +L+ ++    K    ++A  L E+M     P
Sbjct: 471 VVSLSTIVDGLCKESRVEEARLLMEKMNFESLP 503


>gi|449449910|ref|XP_004142707.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
           chloroplastic-like [Cucumis sativus]
          Length = 757

 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 167/344 (48%), Gaps = 19/344 (5%)

Query: 160 ILNSLKFWQ---KSYFFFNWIKSQNLFPMETIFYNVTM-----KSLRFGRQFQL-IEQLA 210
           +L +L F +   K+  FFNW +       E  ++++       + L   R F   IE+ +
Sbjct: 82  VLQTLGFLRDTSKALQFFNWAQEMGYTHTEQSYFSMLEILGRNRHLNTARNFLFSIEKRS 141

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
             +V  E       +++++    R  LF E+I+ F  M   G+ P  VT++++L +  K 
Sbjct: 142 RGIVKLEARF----FNSLMRNFNRAGLFQESIKVFTIMKSHGVSPSVVTFNSLLTILLKR 197

Query: 271 GKVEEVLSLYERGVAS-GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVV 329
           G+      +Y+  +++ G  PD   F++L + F  +G  D    +  ++   G +P++V 
Sbjct: 198 GRTNMAKKVYDEMLSTYGVTPDTFTFNILIRGFCMNGMVDDGFRIFNDLSRFGCEPDVVT 257

Query: 330 YNTLLEAMGKAGKPGLARSLFDEMVESG--LTPDEKTLTALIKIYGKARWAKDALELWER 387
           YNTL++ + +AGK  +A ++   M +    L P+  T T LI+ Y   R  + AL ++E 
Sbjct: 258 YNTLVDGLCRAGKVTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKALAVFEE 317

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           M       + I YNTL+    +    E+ + + E         PD  ++  +++ +   G
Sbjct: 318 MVNQGLKANNITYNTLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMHCHCHAG 377

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCL---GKARRIDDLV 488
           N+D+A+++FE MSEL +  +    + L++ L   G   + +DL+
Sbjct: 378 NLDDALKVFERMSELKIQPDSATYSALVRSLCQGGHYEKAEDLL 421



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 130/288 (45%), Gaps = 52/288 (18%)

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY------ERGVASGWKPDPI 293
           +A+++F    + G    E +Y ++L++  ++  +    +         RG+    K +  
Sbjct: 94  KALQFFNWAQEMGYTHTEQSYFSMLEILGRNRHLNTARNFLFSIEKRSRGIV---KLEAR 150

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
            F+ L + F  +G +     V   MKS GV P++V +N+LL  + K G+  +A+ ++DEM
Sbjct: 151 FFNSLMRNFNRAGLFQESIKVFTIMKSHGVSPSVVTFNSLLTILLKRGRTNMAKKVYDEM 210

Query: 354 VES-GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           + + G+TPD  T   LI+ +                                  C + G+
Sbjct: 211 LSTYGVTPDTFTFNILIRGF----------------------------------CMN-GM 235

Query: 413 VEEAERLFEDMKLSDY-CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN--VM 469
           V++  R+F D  LS + C+PD  +Y  +++     G V  A  + + M +  V +N  V+
Sbjct: 236 VDDGFRIFND--LSRFGCEPDVVTYNTLVDGLCRAGKVTVAYNVVKGMGKKSVDLNPNVV 293

Query: 470 GCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCE 517
             T LI+     R I+  + VF   +++G+K ++     L+    LCE
Sbjct: 294 TYTTLIRGYCAKREIEKALAVFEEMVNQGLKANNITYNTLIK--GLCE 339



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 85/363 (23%), Positives = 157/363 (43%), Gaps = 20/363 (5%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSN-EIELDNITYS 226
           +K+   F  + +Q L     I YN  +K L   R+F+ I+ +      +     D  T++
Sbjct: 309 EKALAVFEEMVNQGL-KANNITYNTLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFN 367

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG---KVEEVL-SLYER 282
           T++ C       D+A++ FERM +  + PD  TYSA++    + G   K E++L  L ER
Sbjct: 368 TLMHCHCHAGNLDDALKVFERMSELKIQPDSATYSALVRSLCQGGHYEKAEDLLDKLLER 427

Query: 283 GV---ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQ--PNLVVYNTLLEAM 337
            +     G KP   A++ + K   E+G         +++   G Q  P+   Y TL+   
Sbjct: 428 KILLSGDGCKPLVAAYNPIFKYLCETGKTKKAEKAFRQLMRRGTQDPPS---YKTLIMGH 484

Query: 338 GKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDF 397
            K G       L   M+     PD +T  +LI           AL+  E+M  +    + 
Sbjct: 485 CKEGTFESGYELLVLMLRKDFLPDFETYESLINGLLHMDKPLLALQSLEKMLRSSHRPNS 544

Query: 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE 457
             ++++L    + G   E+  L + M   +  +  ++S   +  ++G+G N D A +L  
Sbjct: 545 STFHSILAKLLEQGRTSESASLIQLMLDKNIRQNLSFSTGCVRLLFGAGMN-DKAFQLVH 603

Query: 458 EMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCE 517
            +   G ++ +     LI+ L   R++    ++   S++     D  LC  +  +  LCE
Sbjct: 604 LLYGKGYSVKMEE---LIRYLCHCRKVIQGSKLLLFSLESHQFVDMDLCNTV--IFQLCE 658

Query: 518 TSE 520
            ++
Sbjct: 659 INK 661


>gi|242071495|ref|XP_002451024.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
 gi|241936867|gb|EES10012.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
          Length = 813

 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 95/380 (25%), Positives = 172/380 (45%), Gaps = 43/380 (11%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           K+   FN +  + + P +   YN  + +L   R     E +  +MV   +  DN TY+++
Sbjct: 234 KACDLFNEMVQRGISP-DLSTYNCVVNALCKARAMDKAEAILRQMVDKGVLPDNWTYNSL 292

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVT----------------------------- 259
           I        + EA+   ++M   G++PD VT                             
Sbjct: 293 IYGYSSTGQWKEAVRVSKKMTSQGILPDVVTLNSLMASLCKHGKIKDARDVFDSMAMKGQ 352

Query: 260 ------YSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRY 313
                 Y  +L+ YA  G + ++  L+   ++ G  PD   F+VL K + + G  D    
Sbjct: 353 KTDIFSYKIMLNGYATKGCLVDLTELFNLMLSDGIAPDSHIFNVLIKAYAKCGMLDRATI 412

Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK--- 370
           +  EM+  GV+P++V Y+T++ A+ + GK   A   F++M++ G+ P   T   LI+   
Sbjct: 413 IFNEMREQGVEPDVVTYSTVIAALCRIGKMDDAVEKFNQMIDQGVAPSISTYHFLIQGFC 472

Query: 371 IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCK 430
            +G    AKD +   + M +   P D   +N ++N    +G V +A+ +F D  +S    
Sbjct: 473 THGDLLKAKDLV--LQMMNKGMRP-DIGCFNFIINNLCKLGRVMDAQNIF-DFTISIGLH 528

Query: 431 PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRV 490
           P+   Y  +++ Y   G ++NA+ +F+ M   G+  NV+    L+    K  RID+ + +
Sbjct: 529 PNVMVYNTLMDGYCLVGKMENALRVFDVMVSAGIQPNVVVYGTLVNGYCKVGRIDEGLSL 588

Query: 491 FGVSIDRGVKPDDRLCGCLL 510
           F   + +G+KP   L   +L
Sbjct: 589 FREILHKGIKPSTTLYNIIL 608



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 86/329 (26%), Positives = 145/329 (44%), Gaps = 2/329 (0%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            FN + S  + P   IF NV +K+            + NEM    +E D +TYST+I   
Sbjct: 378 LFNLMLSDGIAPDSHIF-NVLIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAAL 436

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            R    D+A+E F +M   G+ P   TY  ++  +   G + +   L  + +  G +PD 
Sbjct: 437 CRIGKMDDAVEKFNQMIDQGVAPSISTYHFLIQGFCTHGDLLKAKDLVLQMMNKGMRPDI 496

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
             F+ +     + G     + +     S+G+ PN++VYNTL++     GK   A  +FD 
Sbjct: 497 GCFNFIINNLCKLGRVMDAQNIFDFTISIGLHPNVMVYNTLMDGYCLVGKMENALRVFDV 556

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           MV +G+ P+      L+  Y K     + L L+  +          LYN +L+     G 
Sbjct: 557 MVSAGIQPNVVVYGTLVNGYCKVGRIDEGLSLFREILHKGIKPSTTLYNIILHGLFQAGR 616

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
              A+  F +M  S     D Y+Y+ +L         D AI LF+E+  + V I++    
Sbjct: 617 TVPAKVKFHEMTESGIAM-DRYTYSIVLGGLFKNSCSDEAILLFKELHAMNVKIDITTLN 675

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
            +I  + + RR+++   +F      G+ P
Sbjct: 676 IMIAGMFQIRRVEEAKDLFASISRSGLVP 704



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 129/262 (49%), Gaps = 1/262 (0%)

Query: 206 IEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
           + +L N M+S+ I  D+  ++ +I    +C + D A   F  M + G+ PD VTYS ++ 
Sbjct: 375 LTELFNLMLSDGIAPDSHIFNVLIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYSTVIA 434

Query: 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325
              + GK+++ +  + + +  G  P    +  L + F   GD    + ++ +M + G++P
Sbjct: 435 ALCRIGKMDDAVEKFNQMIDQGVAPSISTYHFLIQGFCTHGDLLKAKDLVLQMMNKGMRP 494

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
           ++  +N ++  + K G+   A+++FD  +  GL P+      L+  Y      ++AL ++
Sbjct: 495 DIGCFNFIINNLCKLGRVMDAQNIFDFTISIGLHPNVMVYNTLMDGYCLVGKMENALRVF 554

Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445
           + M       + ++Y TL+N    +G ++E   LF ++ L    KP    Y  +L+    
Sbjct: 555 DVMVSAGIQPNVVVYGTLVNGYCKVGRIDEGLSLFREI-LHKGIKPSTTLYNIILHGLFQ 613

Query: 446 GGNVDNAIELFEEMSELGVAIN 467
            G    A   F EM+E G+A++
Sbjct: 614 AGRTVPAKVKFHEMTESGIAMD 635



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 146/337 (43%), Gaps = 3/337 (0%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L NEMV   I  D  TY+ ++    +    D+A     +M   G++PD  TY++++  Y+
Sbjct: 238 LFNEMVQRGISPDLSTYNCVVNALCKARAMDKAEAILRQMVDKGVLPDNWTYNSLIYGYS 297

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
            +G+ +E + + ++  + G  PD +  + L     + G     R V   M   G + ++ 
Sbjct: 298 STGQWKEAVRVSKKMTSQGILPDVVTLNSLMASLCKHGKIKDARDVFDSMAMKGQKTDIF 357

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            Y  +L      G       LF+ M+  G+ PD      LIK Y K      A  ++  M
Sbjct: 358 SYKIMLNGYATKGCLVDLTELFNLMLSDGIAPDSHIFNVLIKAYAKCGMLDRATIIFNEM 417

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
           RE     D + Y+T++     IG +++A   F  M +     P   +Y  ++  + + G+
Sbjct: 418 REQGVEPDVVTYSTVIAALCRIGKMDDAVEKFNQM-IDQGVAPSISTYHFLIQGFCTHGD 476

Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGC 508
           +  A +L  +M   G+  ++     +I  L K  R+ D   +F  +I  G+ P+  +   
Sbjct: 477 LLKAKDLVLQMMNKGMRPDIGCFNFIINNLCKLGRVMDAQNIFDFTISIGLHPNVMVYNT 536

Query: 509 LLSVVSLCETSEDVGKVITCLQQAN--PKLVAFLNLI 543
           L+    L    E+  +V   +  A   P +V +  L+
Sbjct: 537 LMDGYCLVGKMENALRVFDVMVSAGIQPNVVVYGTLV 573



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 161/334 (48%), Gaps = 13/334 (3%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMV-SNEIELDN-ITYSTIITCAKRCNLFDEAIEWFER 247
           Y + +KSL   R+    ++L   M     + L N + Y+T+I    +    ++A + F  
Sbjct: 182 YCIVLKSLCSDRKSGQADELLRMMAEGGAVCLPNAVAYNTVIDGFFKEGDVNKACDLFNE 241

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M + G+ PD  TY+ +++   K+  +++  ++  + V  G  PD   ++ L   +  +G 
Sbjct: 242 MVQRGISPDLSTYNCVVNALCKARAMDKAEAILRQMVDKGVLPDNWTYNSLIYGYSSTGQ 301

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
           +     V ++M S G+ P++V  N+L+ ++ K GK   AR +FD M   G   D  +   
Sbjct: 302 WKEAVRVSKKMTSQGILPDVVTLNSLMASLCKHGKIKDARDVFDSMAMKGQKTDIFSYKI 361

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           ++  Y       D  EL+  M  +    D  ++N L+   A  G+++ A  +F +M+   
Sbjct: 362 MLNGYATKGCLVDLTELFNLMLSDGIAPDSHIFNVLIKAYAKCGMLDRATIIFNEMR-EQ 420

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL---GKARRI 484
             +PD  +Y+ ++      G +D+A+E F +M + GVA ++     LIQ     G   + 
Sbjct: 421 GVEPDVVTYSTVIAALCRIGKMDDAVEKFNQMIDQGVAPSISTYHFLIQGFCTHGDLLKA 480

Query: 485 DDLVRVFGVSIDRGVKPDDRLCGCLLSVV-SLCE 517
            DLV      +++G++PD    GC   ++ +LC+
Sbjct: 481 KDLVLQM---MNKGMRPD---IGCFNFIINNLCK 508



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/351 (23%), Positives = 145/351 (41%), Gaps = 74/351 (21%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAIL------------------- 264
           TY  ++ C  R +     + +F ++ KTGL  D +  S +L                   
Sbjct: 110 TYGILMDCCTRAHRPKLTLAFFGQVLKTGLGIDTIMISNLLRGLCEAKRTAEALDILLHR 169

Query: 265 --------DVYA------------KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
                   DV++            KSG+ +E+L +   G A    P+ +A++ +   F +
Sbjct: 170 MPHLGCVPDVFSYCIVLKSLCSDRKSGQADELLRMMAEGGAVCL-PNAVAYNTVIDGFFK 228

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
            GD +    +  EM   G+ P+L  YN ++ A+ KA     A ++  +MV+ G+ PD  T
Sbjct: 229 EGDVNKACDLFNEMVQRGISPDLSTYNCVVNALCKARAMDKAEAILRQMVDKGVLPDNWT 288

Query: 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
             +LI  Y      K+A+ + ++M       D +  N+L+      G +++A  +F+ M 
Sbjct: 289 YNSLIYGYSSTGQWKEAVRVSKKMTSQGILPDVVTLNSLMASLCKHGKIKDARDVFDSMA 348

Query: 425 ----------------------------------LSDYCKPDNYSYTAMLNIYGSGGNVD 450
                                             LSD   PD++ +  ++  Y   G +D
Sbjct: 349 MKGQKTDIFSYKIMLNGYATKGCLVDLTELFNLMLSDGIAPDSHIFNVLIKAYAKCGMLD 408

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
            A  +F EM E GV  +V+  + +I  L +  ++DD V  F   ID+GV P
Sbjct: 409 RATIIFNEMREQGVEPDVVTYSTVIAALCRIGKMDDAVEKFNQMIDQGVAP 459



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 134/290 (46%), Gaps = 2/290 (0%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           FN +  Q + P  + ++ +       G   +  + L  +M++  +  D   ++ II    
Sbjct: 449 FNQMIDQGVAPSISTYHFLIQGFCTHGDLLK-AKDLVLQMMNKGMRPDIGCFNFIINNLC 507

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
           +     +A   F+     GL P+ + Y+ ++D Y   GK+E  L +++  V++G +P+ +
Sbjct: 508 KLGRVMDAQNIFDFTISIGLHPNVMVYNTLMDGYCLVGKMENALRVFDVMVSAGIQPNVV 567

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
            +  L   + + G  D    + +E+   G++P+  +YN +L  + +AG+   A+  F EM
Sbjct: 568 VYGTLVNGYCKVGRIDEGLSLFREILHKGIKPSTTLYNIILHGLFQAGRTVPAKVKFHEM 627

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
            ESG+  D  T + ++    K   + +A+ L++ +      +D    N ++     I  V
Sbjct: 628 TESGIAMDRYTYSIVLGGLFKNSCSDEAILLFKELHAMNVKIDITTLNIMIAGMFQIRRV 687

Query: 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           EEA+ LF  +  S    P   +Y+ M+      G V+ A ++F  M   G
Sbjct: 688 EEAKDLFASISRSGLV-PSVVTYSIMMTNLIKEGLVEEADDMFSSMENAG 736



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 95/185 (51%), Gaps = 6/185 (3%)

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382
           + P L  Y  L++   +A +P L  + F +++++GL  D   ++ L++   +A+   +AL
Sbjct: 104 LSPTLHTYGILMDCCTRAHRPKLTLAFFGQVLKTGLGIDTIMISNLLRGLCEAKRTAEAL 163

Query: 383 E-LWERMRENKWPMDFILYNTLL-NMCAD--IGLVEEAERLFEDMKLSDYCKPDNYSYTA 438
           + L  RM       D   Y  +L ++C+D   G  +E  R+  +      C P+  +Y  
Sbjct: 164 DILLHRMPHLGCVPDVFSYCIVLKSLCSDRKSGQADELLRMMAEG--GAVCLPNAVAYNT 221

Query: 439 MLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRG 498
           +++ +   G+V+ A +LF EM + G++ ++    C++  L KAR +D    +    +D+G
Sbjct: 222 VIDGFFKEGDVNKACDLFNEMVQRGISPDLSTYNCVVNALCKARAMDKAEAILRQMVDKG 281

Query: 499 VKPDD 503
           V PD+
Sbjct: 282 VLPDN 286


>gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera]
          Length = 577

 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/309 (27%), Positives = 149/309 (48%), Gaps = 1/309 (0%)

Query: 183 FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
           F +  +  N  + SL    +  ++E +  EM+   I ++ +T+  +I    +   F +A 
Sbjct: 190 FRLSALSCNPMLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAG 249

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
           +  E M   G  P  +TY+ I+D Y K+GK+ +  +L +  VA    P+ I F++L   F
Sbjct: 250 DVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGF 309

Query: 303 GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
               +    + V +EM+  G+QPN+V YN+L+  +   GK   A  L D+M   GL P+ 
Sbjct: 310 CRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNV 369

Query: 363 KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED 422
            T  ALI  + K +  K+A E+ + + +     + I +NTL++     G +++A  L   
Sbjct: 370 VTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDA-FLLRS 428

Query: 423 MKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKAR 482
           M L     P+  +Y  ++  +   GNV  A +L +EM   G+  +++    L+  L K  
Sbjct: 429 MMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKG 488

Query: 483 RIDDLVRVF 491
                VR+ 
Sbjct: 489 ETRKAVRLL 497



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 145/288 (50%), Gaps = 4/288 (1%)

Query: 183 FPMETIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEA 241
           F    I YN  +    + G+ F+  + L  EMV+  I  + IT++ +I    R      A
Sbjct: 260 FSPSVITYNTIIDGYCKAGKMFK-ADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAA 318

Query: 242 IEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKM 301
            + FE M + GL P+ VTY+++++    +GK++E L L ++    G KP+ + ++ L   
Sbjct: 319 KKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALING 378

Query: 302 FGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD 361
           F +       R +L ++   G+ PN++ +NTL++A GKAG+   A  L   M+++G+ P+
Sbjct: 379 FCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPN 438

Query: 362 EKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFE 421
             T   LI  + +    K+A +L + M  N    D + YN L++     G   +A RL +
Sbjct: 439 VSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLD 498

Query: 422 DMKLSDYC--KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
           +M L +    + +  +Y  ++  + + G ++ A  L  EM E G+  N
Sbjct: 499 EMTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPN 546



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 137/279 (49%), Gaps = 3/279 (1%)

Query: 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
            D A+E F+R    G     ++ + +L    K G++  V S+Y+  +      + + F V
Sbjct: 175 MDLALEGFDRAGDYGFRLSALSCNPMLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDV 234

Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
           +     + G +     V+++MK+ G  P+++ YNT+++   KAGK   A +L  EMV   
Sbjct: 235 VINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKR 294

Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417
           + P+E T   LI  + +      A +++E M+      + + YN+L+N     G ++EA 
Sbjct: 295 IHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEAL 354

Query: 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
            L + M      KP+  +Y A++N +     +  A E+ +++ + G+A NV+    LI  
Sbjct: 355 GLQDKMSGMGL-KPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDA 413

Query: 478 LGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLC 516
            GKA R+DD   +  + +D GV P+     CL  +V  C
Sbjct: 414 YGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCL--IVGFC 450



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 72/149 (48%), Gaps = 3/149 (2%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           IT++T+I    +    D+A      M  TG+ P+  TY+ ++  + + G V+E   L + 
Sbjct: 405 ITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKE 464

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL---GVQPNLVVYNTLLEAMGK 339
              +G K D + +++L     + G+      +L EM  +   G + N+V YN L++    
Sbjct: 465 MEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMTLMEKKGRRANIVTYNVLIKGFCN 524

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTAL 368
            GK   A  L +EM+E GL P+  T   L
Sbjct: 525 KGKLEEANRLLNEMLEKGLIPNRTTYDIL 553



 Score = 40.0 bits (92), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 6/112 (5%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY---KTGLMPDEVTYSAIL 264
           +LA EM  N ++ D +TY+ ++    +     +A+   + M    K G   + VTY+ ++
Sbjct: 460 KLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMTLMEKKGRRANIVTYNVLI 519

Query: 265 DVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG---DYDGIRY 313
             +   GK+EE   L    +  G  P+   + +L     E G   D DG  Y
Sbjct: 520 KGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDILRDEMMEKGFIPDIDGHLY 571


>gi|357113916|ref|XP_003558747.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Brachypodium distachyon]
          Length = 651

 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 155/321 (48%), Gaps = 2/321 (0%)

Query: 182 LFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEA 241
           +FP + + +NV + +       +    L + MVS  I+   +TY++++    R   +D+A
Sbjct: 190 VFP-DVVTHNVMVDARFRAGDVEAAMALIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKA 248

Query: 242 IEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKM 301
            E F  M   G+ PD  +++ ++  + ++G++EE L  Y+        PD ++FS L  +
Sbjct: 249 REVFRAMDACGVAPDVRSFNMLIGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGL 308

Query: 302 FGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD 361
           F   G+ D     L+EM+  G+ P+ V+Y  ++    +AG    A  + DEMV  G  PD
Sbjct: 309 FTRRGEMDHAAEYLREMREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPD 368

Query: 362 EKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFE 421
             T   L+    K R   DA EL   M+E   P D   + TL++     G +E+A + F+
Sbjct: 369 VVTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFD 428

Query: 422 DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
            +      +PD  +Y  +++     G++  A EL+++M    +  N +  + LI    + 
Sbjct: 429 TIS-DQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEK 487

Query: 482 RRIDDLVRVFGVSIDRGVKPD 502
            ++D+        +++G+ P+
Sbjct: 488 GQVDNAFAFLDEMVNKGIVPN 508



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 140/290 (48%), Gaps = 1/290 (0%)

Query: 213 MVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK 272
           ++S+  E++  T + ++    +   F E       M K  + PD VT++ ++D   ++G 
Sbjct: 150 VLSSNSEVNTYTLNIMVHSYCKTLQFGEVDTVISEMEKRCVFPDVVTHNVMVDARFRAGD 209

Query: 273 VEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNT 332
           VE  ++L +  V+ G KP  + ++ + K    +G +D  R V + M + GV P++  +N 
Sbjct: 210 VEAAMALIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNM 269

Query: 333 LLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENK 392
           L+    +AG+   A   + EM    +TPD  + + LI ++ +      A E    MRE  
Sbjct: 270 LIGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFG 329

Query: 393 WPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNA 452
              D ++Y  ++      GL+ EA R+ ++M ++  C PD  +Y  +LN       + +A
Sbjct: 330 LMPDGVIYTMVIGGFCRAGLMLEALRVRDEM-VAFGCLPDVVTYNTLLNGLCKERRLSDA 388

Query: 453 IELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            EL  EM E GV  ++   T LI    +   I+  ++ F    D+ ++PD
Sbjct: 389 EELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPD 438



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/333 (22%), Positives = 153/333 (45%), Gaps = 2/333 (0%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           +   ++   L P   I+  V     R G   + + ++ +EMV+     D +TY+T++   
Sbjct: 321 YLREMREFGLMPDGVIYTMVIGGFCRAGLMLEAL-RVRDEMVAFGCLPDVVTYNTLLNGL 379

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +     +A E    M + G+ PD  T++ ++  Y + G +E+ L  ++       +PD 
Sbjct: 380 CKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDI 439

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           + ++ L       GD      +  +M S  + PN V Y+ L+++  + G+   A +  DE
Sbjct: 440 VTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDE 499

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           MV  G+ P+  T  ++IK Y ++       +   +MR +K   D I YNTL++     G 
Sbjct: 500 MVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTLIHGYVKEGK 559

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
           + EA  L + M+ ++  +PD  +Y  +++ +   GN+  A  ++++M   G+  +     
Sbjct: 560 MHEAFNLLKIME-NENVQPDAVTYNMIISGFSVHGNMQEADWVYKKMGARGIEPDRYTYM 618

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRL 505
            +I     A       ++    + +G+ PDD+ 
Sbjct: 619 SMINGHVVAGNSKKSFQLHDEMLQKGLAPDDKF 651



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 146/300 (48%), Gaps = 12/300 (4%)

Query: 195 KSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLM 254
           K+L+FG     ++ + +EM    +  D +T++ ++    R    + A+   + M   G+ 
Sbjct: 171 KTLQFGE----VDTVISEMEKRCVFPDVVTHNVMVDARFRAGDVEAAMALIDSMVSKGIK 226

Query: 255 PDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYV 314
           P  VTY+++L    ++G+ ++   ++    A G  PD  +F++L   F  +G+ +     
Sbjct: 227 PGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGGFCRAGELEEALRF 286

Query: 315 LQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK 374
            +EM+   V P++V ++ L+    + G+   A     EM E GL PD    T +I  + +
Sbjct: 287 YKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDGVIYTMVIGGFCR 346

Query: 375 ARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNY 434
           A    +AL + + M       D + YNTLLN       + +AE L  +MK      PD  
Sbjct: 347 AGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEMK-ERGVPPDLC 405

Query: 435 SYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ--C----LGKARRI-DDL 487
           ++T +++ Y   GN++ A++ F+ +S+  +  +++    LI   C    LGKA  + DD+
Sbjct: 406 TFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDM 465



 Score = 46.6 bits (109), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 74/176 (42%), Gaps = 1/176 (0%)

Query: 339 KAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFI 398
           +AG P L    +  ++ S    +  TL  ++  Y K     +   +   M +     D +
Sbjct: 136 RAGWPHLTADAYRLVLSSNSEVNTYTLNIMVHSYCKTLQFGEVDTVISEMEKRCVFPDVV 195

Query: 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458
            +N +++     G VE A  L + M +S   KP   +Y ++L      G  D A E+F  
Sbjct: 196 THNVMVDARFRAGDVEAAMALIDSM-VSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRA 254

Query: 459 MSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVS 514
           M   GVA +V     LI    +A  +++ +R +     R V PD     CL+ + +
Sbjct: 255 MDACGVAPDVRSFNMLIGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFT 310


>gi|242067351|ref|XP_002448952.1| hypothetical protein SORBIDRAFT_05g002320 [Sorghum bicolor]
 gi|241934795|gb|EES07940.1| hypothetical protein SORBIDRAFT_05g002320 [Sorghum bicolor]
          Length = 455

 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 149/332 (44%), Gaps = 36/332 (10%)

Query: 206 IEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
           +  L N MV+N I  ++  ++   +   +C + D+A++ F +M + GL PD V+Y A++D
Sbjct: 14  MHDLLNLMVANGISPNHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPDAVSYGALID 73

Query: 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325
              K G+V++    + + +  G  P+ + FS L         ++ +  +  EM ++G+ P
Sbjct: 74  ALCKLGRVDDAEVKFNQMINEGVTPNIVVFSSLVYGLCSIDKWEKVEELFFEMLNVGIHP 133

Query: 326 NLVVYNTLL-------------------EAMGK----------------AGKPGLARSLF 350
           N+V +NT+L                   E MG                 AG    A  L 
Sbjct: 134 NIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLL 193

Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
           + MV  GL P+  +   L+  Y KA     A  L+ +M  N      + YNT+L+     
Sbjct: 194 EGMVSVGLKPNSFSYNTLLHGYCKAGRIDSAYSLFRKMLSNGITPGVVTYNTILHGLFQT 253

Query: 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG 470
               EA+ L+ +M ++   K   Y+Y  +LN       VD A ++F+ +   G+ +N++ 
Sbjct: 254 KRFSEAKELYLNM-INSGTKWGIYTYNTILNGLCKSNCVDEAFKMFQSLCSKGLQLNIIT 312

Query: 471 CTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            T +I  L K  R +D + +F      G+ PD
Sbjct: 313 FTIMIGALLKGGRKEDAMDLFAAIPANGLVPD 344



 Score =  103 bits (257), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 164/343 (47%), Gaps = 4/343 (1%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYST 227
           K+   FN ++   L P + + Y   + +L + GR     E   N+M++  +  + + +S+
Sbjct: 48  KAMDIFNKMRQHGLSP-DAVSYGALIDALCKLGR-VDDAEVKFNQMINEGVTPNIVVFSS 105

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           ++      + +++  E F  M   G+ P+ V ++ IL    K G+V E   L +     G
Sbjct: 106 LVYGLCSIDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMG 165

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
            +PD I+++ L      +G  D    +L+ M S+G++PN   YNTLL    KAG+   A 
Sbjct: 166 VRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPNSFSYNTLLHGYCKAGRIDSAY 225

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
           SLF +M+ +G+TP   T   ++    + +   +A EL+  M  +        YNT+LN  
Sbjct: 226 SLFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKWGIYTYNTILNGL 285

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
                V+EA ++F+ +  S   + +  ++T M+     GG  ++A++LF  +   G+  +
Sbjct: 286 CKSNCVDEAFKMFQSL-CSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPD 344

Query: 468 VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
           V+    + + L +   +++   +F      G  P+ ++   L+
Sbjct: 345 VVTYRVVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALV 387



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 100/236 (42%), Gaps = 38/236 (16%)

Query: 302 FGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD 361
           +G  G    +  +L  M + G+ PN  ++N    A  K G    A  +F++M + GL+PD
Sbjct: 5   YGNKGALSEMHDLLNLMVANGISPNHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPD 64

Query: 362 EKTLTALIKIYGKARWAKDA----------------------------LELWERMRENKW 393
             +  ALI    K     DA                            ++ WE++ E  +
Sbjct: 65  AVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFSSLVYGLCSIDKWEKVEELFF 124

Query: 394 PM-------DFILYNTLL-NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445
            M       + + +NT+L N+C + G V E +RL + ++     +PD  SY  +++ +  
Sbjct: 125 EMLNVGIHPNIVFFNTILCNLCKE-GRVMEGQRLVDSIECMG-VRPDVISYNTLIDGHCL 182

Query: 446 GGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
            G +D A +L E M  +G+  N      L+    KA RID    +F   +  G+ P
Sbjct: 183 AGTIDEASKLLEGMVSVGLKPNSFSYNTLLHGYCKAGRIDSAYSLFRKMLSNGITP 238



 Score = 72.4 bits (176), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 49/220 (22%), Positives = 99/220 (45%), Gaps = 1/220 (0%)

Query: 170 SYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTII 229
           +Y  F  + S  + P   + YN  +  L   ++F   ++L   M+++  +    TY+TI+
Sbjct: 224 AYSLFRKMLSNGITP-GVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKWGIYTYNTIL 282

Query: 230 TCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWK 289
               + N  DEA + F+ +   GL  + +T++ ++    K G+ E+ + L+    A+G  
Sbjct: 283 NGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGLV 342

Query: 290 PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSL 349
           PD + + V+ +   E G  +    +   M+  G  PN  + N L+  +   G    A + 
Sbjct: 343 PDVVTYRVVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAY 402

Query: 350 FDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMR 389
             ++ E   + +  T + LI I+    +   A  L ++ R
Sbjct: 403 LSKLDERNFSVEASTTSMLISIFSSDEYQHHAKSLPKKYR 442



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 78/170 (45%), Gaps = 1/170 (0%)

Query: 333 LLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENK 392
           +L   G  G       L + MV +G++P+          Y K      A++++ +MR++ 
Sbjct: 1   MLHGYGNKGALSEMHDLLNLMVANGISPNHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHG 60

Query: 393 WPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNA 452
              D + Y  L++    +G V++AE  F  M +++   P+   +++++    S    +  
Sbjct: 61  LSPDAVSYGALIDALCKLGRVDDAEVKFNQM-INEGVTPNIVVFSSLVYGLCSIDKWEKV 119

Query: 453 IELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            ELF EM  +G+  N++    ++  L K  R+ +  R+       GV+PD
Sbjct: 120 EELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPD 169


>gi|414592066|tpg|DAA42637.1| TPA: hypothetical protein ZEAMMB73_021738 [Zea mays]
          Length = 768

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 90/351 (25%), Positives = 143/351 (40%), Gaps = 34/351 (9%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + YN  M+ L    + Q   Q    M++     D+ TY+TII    +  +  EA E  
Sbjct: 279 DVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGYCKSGMLQEATELL 338

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           +     G +PD VTY ++++     G +E  L L+    A   KPD + ++ L K     
Sbjct: 339 KDAVFKGFVPDRVTYCSLINGLCAEGDIERALELFNEAQAKDLKPDLVVYNSLVKGLCRQ 398

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G       V+ EM   G  P++  YN ++  + K G    A  + ++ +  G  PD  T 
Sbjct: 399 GLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMNDAIVKGYLPDVFTF 458

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
             LI  Y K      AL+L ERM       D I YN++LN     G  +E    FE+M L
Sbjct: 459 NTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNGLCKAGKAKEVNETFEEMIL 518

Query: 426 S--------------DYCK--------------------PDNYSYTAMLNIYGSGGNVDN 451
                          ++CK                    PD  S+  +++ +   G++D 
Sbjct: 519 KGCRPNAITYNILIENFCKINQLEEASGVIVRMCQDGLVPDAVSFNTLIHGFCRNGDLDG 578

Query: 452 AIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           A  LF+++ E G +        LI        +    ++FG  I +G KPD
Sbjct: 579 AYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPD 629



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 88/338 (26%), Positives = 156/338 (46%), Gaps = 8/338 (2%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIE--QLANEMVSNEIELDNITY 225
           +++   FN  ++++L P + + YN  +K L   RQ  ++   Q+ NEMV      D  TY
Sbjct: 367 ERALELFNEAQAKDLKP-DLVVYNSLVKGL--CRQGLILHALQVMNEMVEEGCHPDIWTY 423

Query: 226 STIIT-CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
           + II    K  N+ D A+   + + K G +PD  T++ ++D Y K  K++  L L ER  
Sbjct: 424 NIIINGLCKMGNISDAAVVMNDAIVK-GYLPDVFTFNTLIDGYCKRLKLDSALQLVERMW 482

Query: 285 ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344
             G  PD I ++ +     ++G    +    +EM   G +PN + YN L+E   K  +  
Sbjct: 483 TYGIAPDVITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLE 542

Query: 345 LARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
            A  +   M + GL PD  +   LI  + +      A  L++++ E  +      +N L+
Sbjct: 543 EASGVIVRMCQDGLVPDAVSFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILI 602

Query: 405 NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
              +    ++ AE++F +M    Y KPD Y+Y  +++      NVD A     EM   G 
Sbjct: 603 GAYSSKLNMQMAEKIFGEMISKGY-KPDLYTYRILVDGLCKAANVDRAYAHLAEMISKGF 661

Query: 465 AINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
             ++     ++  L    R+ + V +  + +  GV P+
Sbjct: 662 VPSMATFGRMLNLLAMNHRVSEAVAIIHIMVRMGVVPE 699



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 87/374 (23%), Positives = 157/374 (41%), Gaps = 5/374 (1%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F+ +  +++FP    F NV     + G   +    LA +++   +  +  T +  I   
Sbjct: 198 LFDEMLGRDVFPDVATFNNVLHALCQKGDVMESGALLA-KVLKRGMSANKFTCNIWIRGL 256

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
                 +EA+   ERM    + PD VTY+ ++    K  KV+E      R +  G  PD 
Sbjct: 257 CEDGRLEEAVALVERM-GAYVAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDD 315

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
             ++ +   + +SG       +L++    G  P+ V Y +L+  +   G    A  LF+E
Sbjct: 316 FTYNTIIDGYCKSGMLQEATELLKDAVFKGFVPDRVTYCSLINGLCAEGDIERALELFNE 375

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
                L PD     +L+K   +      AL++   M E     D   YN ++N    +G 
Sbjct: 376 AQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGN 435

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
           + +A  +  D  +  Y  PD +++  +++ Y     +D+A++L E M   G+A +V+   
Sbjct: 436 ISDAAVVMNDAIVKGYL-PDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYN 494

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVIT--CLQ 530
            ++  L KA +  ++   F   I +G +P+      L+         E+   VI   C  
Sbjct: 495 SVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMCQD 554

Query: 531 QANPKLVAFLNLIE 544
              P  V+F  LI 
Sbjct: 555 GLVPDAVSFNTLIH 568



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 129/281 (45%), Gaps = 6/281 (2%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
            Y+ I+         D+A + + RM   G+ PD  T++  L  +  +G+    L L    
Sbjct: 108 AYNAIMDALVNAAYHDQAHKVYVRMLAAGVAPDARTHTVRLKSFCLTGRPHVALRLLRSL 167

Query: 284 VASGWKPDPIAF-SVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
              G    P A+ +V+  ++     Y+  R++  EM    V P++  +N +L A+ + G 
Sbjct: 168 SERGCDAKPAAYCTVVRGLYAHGHGYNA-RHLFDEMLGRDVFPDVATFNNVLHALCQKGD 226

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
              + +L  ++++ G++ ++ T    I+   +    ++A+ L ERM     P D + YNT
Sbjct: 227 VMESGALLAKVLKRGMSANKFTCNIWIRGLCEDGRLEEAVALVERMGAYVAP-DVVTYNT 285

Query: 403 LL-NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461
           L+  +C D  + E A+ L   M     C PD+++Y  +++ Y   G +  A EL ++   
Sbjct: 286 LMRGLCKDSKVQEAAQYLGRMMNQG--CIPDDFTYNTIIDGYCKSGMLQEATELLKDAVF 343

Query: 462 LGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            G   + +    LI  L     I+  + +F  +  + +KPD
Sbjct: 344 KGFVPDRVTYCSLINGLCAEGDIERALELFNEAQAKDLKPD 384



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 53/233 (22%), Positives = 101/233 (43%), Gaps = 3/233 (1%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + I YN  +  L    + + + +   EM+      + ITY+ +I    + N  +EA    
Sbjct: 489 DVITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVI 548

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
            RM + GL+PD V+++ ++  + ++G ++    L+++    G+      F++L   +   
Sbjct: 549 VRMCQDGLVPDAVSFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSK 608

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
            +      +  EM S G +P+L  Y  L++ + KA     A +   EM+  G  P   T 
Sbjct: 609 LNMQMAEKIFGEMISKGYKPDLYTYRILVDGLCKAANVDRAYAHLAEMISKGFVPSMATF 668

Query: 366 TALIKIYGKARWAKDALELWERM-RENKWP--MDFILYNTLLNMCADIGLVEE 415
             ++ +        +A+ +   M R    P  +D IL      + A   LVEE
Sbjct: 669 GRMLNLLAMNHRVSEAVAIIHIMVRMGVVPEVVDTILSTDKKEIAAPKILVEE 721


>gi|297830178|ref|XP_002882971.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328811|gb|EFH59230.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 642

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/320 (27%), Positives = 147/320 (45%), Gaps = 17/320 (5%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           +++Y  +  + +  L P + +F N  M  L    + + +  + NEM +       ++Y+T
Sbjct: 320 EEAYDLYKNMLTDGLTP-DVVFLNNLMNILGKVGRLEELTNVFNEMGTWRCTPTVVSYNT 378

Query: 228 IITCAKRCNLFD------EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYE 281
           +I       LF+      E   WF++M   G+ P E TYS ++D Y K+ +VE+ L L E
Sbjct: 379 VIKA-----LFESKAPVSEVSSWFDKMKADGVSPSEFTYSILIDGYCKTNRVEKALLLLE 433

Query: 282 RGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG 341
                G+ P P A+  L    G++  Y+    + +E+K      +  VY  +++  GK G
Sbjct: 434 EMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCG 493

Query: 342 KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYN 401
           K   A  LF+EM   G  PD     AL+    KA    +A  L  +M EN    D   +N
Sbjct: 494 KLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMVNEANSLLRKMEENGCTADINSHN 553

Query: 402 TLLNMCADIGLVEEAERLFEDMKLSDYC--KPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
            +LN  A  G+   A  +FE MK   +C  KPD  +Y  +L  +   G  + A  L  EM
Sbjct: 554 IILNGFARTGVPRRAIEMFETMK---HCGIKPDGVTYNTLLGCFAHAGMFEEAARLMREM 610

Query: 460 SELGVAINVMGCTCLIQCLG 479
            + G   + +  + ++  +G
Sbjct: 611 KDKGFEYDAITYSSILDAVG 630



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 94/364 (25%), Positives = 159/364 (43%), Gaps = 41/364 (11%)

Query: 161 LNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIEL 220
           L   K   K+   F   K +   P  + + +V +  ++ G Q + + ++  EM  NE + 
Sbjct: 172 LGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEG-QHEKVHEVYTEMC-NEGDC 229

Query: 221 --DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS 278
             D ITYS +I+  ++    D AI  F+ M    + P E  Y+ +L +Y K GKVE+ L 
Sbjct: 230 FPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALD 289

Query: 279 LYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMG 338
           L+E    +G  P    ++ L K  G++G  +    + + M + G+ P++V  N L+  +G
Sbjct: 290 LFEEMKRAGCSPTVYTYTELIKGLGKAGRVEEAYDLYKNMLTDGLTPDVVFLNNLMNILG 349

Query: 339 KAGK-----------------PGL-------------------ARSLFDEMVESGLTPDE 362
           K G+                 P +                     S FD+M   G++P E
Sbjct: 350 KVGRLEELTNVFNEMGTWRCTPTVVSYNTVIKALFESKAPVSEVSSWFDKMKADGVSPSE 409

Query: 363 KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED 422
            T + LI  Y K    + AL L E M E  +P     Y +L+N        E A  LF++
Sbjct: 410 FTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKE 469

Query: 423 MKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKAR 482
           +K  ++    +  Y  M+  +G  G +  A++LF EM   G   +V     L+  + KA 
Sbjct: 470 LK-ENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAG 528

Query: 483 RIDD 486
            +++
Sbjct: 529 MVNE 532



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 127/267 (47%), Gaps = 7/267 (2%)

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEM-KSLGVQPNLVVYNTLLEAMGKAG 341
           G    ++ D   +  L +   E+  Y  +   +QE+ ++  V    VV + L++A+G+A 
Sbjct: 117 GKRRNFQHDCSTYMALIRCLEEARLYGEMYRTIQEVVRNTYVSVGPVVLSELVKALGRAK 176

Query: 342 KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM-RENKWPMDFILY 400
               A S+F +       P   T  ++I +  +    +   E++  M  E     D I Y
Sbjct: 177 MVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITY 236

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYC-KPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           + L++    +G  + A RLF++MK  D C +P    YT +L IY   G V+ A++LFEEM
Sbjct: 237 SALISSYEKLGRNDSAIRLFDEMK--DNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEM 294

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETS 519
              G +  V   T LI+ LGKA R+++   ++   +  G+ PD      L++++      
Sbjct: 295 KRAGCSPTVYTYTELIKGLGKAGRVEEAYDLYKNMLTDGLTPDVVFLNNLMNILGKVGRL 354

Query: 520 EDVGKVITCLQ--QANPKLVAFLNLIE 544
           E++  V   +   +  P +V++  +I+
Sbjct: 355 EELTNVFNEMGTWRCTPTVVSYNTVIK 381



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 87/198 (43%)

Query: 183 FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
           FP     Y   + +L   ++++   +L  E+  N   + +  Y+ +I    +C    EA+
Sbjct: 440 FPPCPAAYCSLINALGKAKRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAV 499

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
           + F  M   G  PD   Y+A++    K+G V E  SL  +   +G   D  + +++   F
Sbjct: 500 DLFNEMKNQGSGPDVYAYNALMSGMVKAGMVNEANSLLRKMEENGCTADINSHNIILNGF 559

Query: 303 GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
             +G       + + MK  G++P+ V YNTLL     AG    A  L  EM + G   D 
Sbjct: 560 ARTGVPRRAIEMFETMKHCGIKPDGVTYNTLLGCFAHAGMFEEAARLMREMKDKGFEYDA 619

Query: 363 KTLTALIKIYGKARWAKD 380
            T ++++   G     KD
Sbjct: 620 ITYSSILDAVGNMDHEKD 637


>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
 gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
          Length = 552

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 96/359 (26%), Positives = 169/359 (47%), Gaps = 12/359 (3%)

Query: 160 ILNSLKFWQKSYFFFNWIK--SQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNE 217
           ++N+L    +S   F+ ++  + N  P E I + + +K L    + +   ++ +EM   E
Sbjct: 142 LVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMFMIE 201

Query: 218 IEL--DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEE 275
             L  D IT+++++    +     +A   F+R  + G  P+ VTYS ++D  +K  K++E
Sbjct: 202 SGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDE 261

Query: 276 VLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLE 335
            L L  + V  G + + + +S +     + G  +    VL++M+  G  P+ V YNTL++
Sbjct: 262 ALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLID 321

Query: 336 AMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPM 395
              K  +   A  L  EM+E+G  P   T T L     ++    +A+E+ + M       
Sbjct: 322 GFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAP 381

Query: 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIEL 455
           + I Y+++++     G V EA   FE M   +   P   +Y+A+++     G +D A E 
Sbjct: 382 NAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGKIDEAYEF 441

Query: 456 FEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD--------DRLC 506
            E M   G   +V+  + LI  L  A RID  + +F    +RG  PD        DRLC
Sbjct: 442 LERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFRGMAERGCVPDMVTYATLVDRLC 500



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 127/260 (48%), Gaps = 4/260 (1%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           QL  +MV      + +TYST++    +    ++A+    +M   G +PD VTY+ ++D +
Sbjct: 264 QLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGF 323

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            K  ++ E + L    + +G+ P  + ++ L      SG +D    +L  M + G  PN 
Sbjct: 324 FKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNA 383

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMV-ESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
           + Y+++++ + KAG+   A   F++M  +  + P     +ALI    KA    +A E  E
Sbjct: 384 ITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLE 443

Query: 387 RM-RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445
           RM R  + P D + ++ L+N   D G ++    LF  M     C PD  +Y  +++    
Sbjct: 444 RMIRAGRIP-DVVTFSILINGLCDAGRIDTGLELFRGMA-ERGCVPDMVTYATLVDRLCR 501

Query: 446 GGNVDNAIELFEEMSELGVA 465
              VD A +LF++M   G++
Sbjct: 502 ASRVDEAFDLFQQMRSDGLS 521



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/297 (27%), Positives = 140/297 (47%), Gaps = 4/297 (1%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  +MV   I  D +TY  +I    +     EA + FE     G  P  VTY+ ++D   
Sbjct: 17  LFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLC 76

Query: 269 KSGKVEEVLSLY-ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
           K G++E  L+LY +  +  G++P  + +S L        + D    +L+EM   G  PN 
Sbjct: 77  KCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKGCKLLEEMAGRGCAPNA 136

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
           V YNTL+ A+   G+   A SL ++M  +G  P+  T   +IK   K    + A  + + 
Sbjct: 137 VTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDE 196

Query: 388 MR--ENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445
           M   E+    D I +N++L+       + +A  +F+   L   C+P+  +Y+ +++    
Sbjct: 197 MFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFK-RALERGCRPNVVTYSTLIDGLSK 255

Query: 446 GGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
              +D A++L  +M ELG   N +  + ++  L K  R++D V V     D G  PD
Sbjct: 256 MAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPD 312



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 136/281 (48%), Gaps = 2/281 (0%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           +TYST+I    +    DEA++   +M + G   + VTYS ++D   K G++E+ + +  +
Sbjct: 244 VTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQ 303

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
              +G  PD + ++ L   F +         +L+EM   G  P++V Y TL   + ++G+
Sbjct: 304 MRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGR 363

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM-RENKWPMDFILYN 401
              A  + D M   G  P+  T ++++    KA    +AL  +E+M R+       I Y+
Sbjct: 364 FDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYS 423

Query: 402 TLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461
            L++     G ++EA    E M  +    PD  +++ ++N     G +D  +ELF  M+E
Sbjct: 424 ALIDGLCKAGKIDEAYEFLERMIRAGRI-PDVVTFSILINGLCDAGRIDTGLELFRGMAE 482

Query: 462 LGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            G   +++    L+  L +A R+D+   +F      G+ PD
Sbjct: 483 RGCVPDMVTYATLVDRLCRASRVDEAFDLFQQMRSDGLSPD 523



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 83/345 (24%), Positives = 162/345 (46%), Gaps = 5/345 (1%)

Query: 161 LNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIE 219
           L   +  +++Y  F   +++   P   + YN  +  L + GR    +    +  +     
Sbjct: 40  LGKQRRVKEAYDLFEEARAKGCHPT-VVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFR 98

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
              +TYST+I    R +  D+  +  E M   G  P+ VTY+ +++     G+ +E  SL
Sbjct: 99  PTVVTYSTLIDGLCRDHEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSL 158

Query: 280 YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL--GVQPNLVVYNTLLEAM 337
            E+  A+G  P+ I F ++ K   + G+ +    V+ EM  +  G+ P+++ +N++L+ +
Sbjct: 159 LEQMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGL 218

Query: 338 GKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDF 397
            K  +   A ++F   +E G  P+  T + LI    K     +AL+L  +M E     + 
Sbjct: 219 CKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANT 278

Query: 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE 457
           + Y+T+++    +G +E+A  +   M+ +  C PD  +Y  +++ +     +  A+ L  
Sbjct: 279 VTYSTVVDGLLKVGRMEDAVVVLRQMRDAG-CLPDAVTYNTLIDGFFKRQRLREAVGLLR 337

Query: 458 EMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           EM E G   +V+  T L   L ++ R D+ V +      RG  P+
Sbjct: 338 EMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPN 382



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 114/254 (44%), Gaps = 2/254 (0%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
            + +      ++     P + + YN  +      ++ +    L  EM+        +TY+
Sbjct: 294 MEDAVVVLRQMRDAGCLP-DAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYT 352

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T+     R   FDEA+E  + M   G  P+ +TYS+I+D   K+G+V E L  +E+    
Sbjct: 353 TLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARD 412

Query: 287 GW-KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGL 345
               P  IA+S L     ++G  D     L+ M   G  P++V ++ L+  +  AG+   
Sbjct: 413 EVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDT 472

Query: 346 ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405
              LF  M E G  PD  T   L+    +A    +A +L+++MR +    D     T+++
Sbjct: 473 GLELFRGMAERGCVPDMVTYATLVDRLCRASRVDEAFDLFQQMRSDGLSPDRSTRRTMIH 532

Query: 406 MCADIGLVEEAERL 419
              ++   E+A+R+
Sbjct: 533 GLLEVNRDEDAKRI 546



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 130/287 (45%), Gaps = 5/287 (1%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           +L  EM       + +TY+T++          EA    E+M   G  P+ +T+  I+   
Sbjct: 122 KLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKGL 181

Query: 268 AKSGKVEEVLSLYER--GVASGWKPDPIAF-SVLGKMFGESGDYDGIRYVLQEMKSLGVQ 324
            K G++E    + +    + SG  PD I F SVL  +  E    D    V +     G +
Sbjct: 182 CKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDA-HNVFKRALERGCR 240

Query: 325 PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384
           PN+V Y+TL++ + K  K   A  L  +MVE G   +  T + ++    K    +DA+ +
Sbjct: 241 PNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVV 300

Query: 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYG 444
             +MR+     D + YNTL++       + EA  L  +M  + +  P   +YT + +   
Sbjct: 301 LRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGF-HPSVVTYTTLCHGLC 359

Query: 445 SGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
             G  D A+E+ + M+  G A N +  + ++  L KA R+ + +  F
Sbjct: 360 RSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYF 406



 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 119/267 (44%), Gaps = 39/267 (14%)

Query: 239 DEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
           D+AI  F++M    + PD VTY A++D   K  +V+E   L+E                 
Sbjct: 12  DKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFE----------------- 54

Query: 299 GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM-VESG 357
                             E ++ G  P +V YNT+++ + K G+   A +L+D+M +  G
Sbjct: 55  ------------------EARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFG 96

Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417
             P   T + LI    +        +L E M       + + YNTL+N     G  +EA 
Sbjct: 97  FRPTVVTYSTLIDGLCRDHEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAF 156

Query: 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE--MSELGVAINVMGCTCLI 475
            L E M  ++ C P+  ++  ++      G ++ A  + +E  M E G++ +V+    ++
Sbjct: 157 SLLEQMA-ANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVL 215

Query: 476 QCLGKARRIDDLVRVFGVSIDRGVKPD 502
             L K +RI D   VF  +++RG +P+
Sbjct: 216 DGLCKEQRILDAHNVFKRALERGCRPN 242



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 76/151 (50%), Gaps = 1/151 (0%)

Query: 333 LLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENK 392
           +++ + K+ K   A +LF +MV+  + PD  T  ALI   GK R  K+A +L+E  R   
Sbjct: 1   MIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKG 60

Query: 393 WPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNA 452
                + YNT+++     G +E A  L++DM +    +P   +Y+ +++       VD  
Sbjct: 61  CHPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKG 120

Query: 453 IELFEEMSELGVAINVMGCTCLIQC-LGKAR 482
            +L EEM+  G A N +    L+   LG+ R
Sbjct: 121 CKLLEEMAGRGCAPNAVTYNTLVNALLGQGR 151



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 95/191 (49%), Gaps = 10/191 (5%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLI---EQLA-NEMVSNEIELDN 222
           + ++    +++ ++   P    + ++     + GR  + +   E++A +E+V+  +    
Sbjct: 364 FDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHV---- 419

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           I YS +I    +    DEA E+ ERM + G +PD VT+S +++    +G+++  L L+ R
Sbjct: 420 IAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELF-R 478

Query: 283 GVAS-GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG 341
           G+A  G  PD + ++ L      +   D    + Q+M+S G+ P+     T++  + +  
Sbjct: 479 GMAERGCVPDMVTYATLVDRLCRASRVDEAFDLFQQMRSDGLSPDRSTRRTMIHGLLEVN 538

Query: 342 KPGLARSLFDE 352
           +   A+ + DE
Sbjct: 539 RDEDAKRIQDE 549


>gi|449500717|ref|XP_004161177.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g02060, chloroplastic-like [Cucumis sativus]
          Length = 720

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 167/344 (48%), Gaps = 19/344 (5%)

Query: 160 ILNSLKFWQ---KSYFFFNWIKSQNLFPMETIFYNVTM-----KSLRFGRQFQL-IEQLA 210
           +L +L F +   K+  FFNW +       E  ++++       + L   R F   IE+ +
Sbjct: 82  VLQTLGFLRDTSKALQFFNWAQEMGYTHTEQSYFSMLEILGRNRHLNTARNFLFSIEKRS 141

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
             +V  E       +++++    R  LF E+I+ F  M   G+ P  VT++++L +  K 
Sbjct: 142 RGIVKLEARF----FNSLMRNFNRAGLFQESIKVFTIMKSHGVSPSVVTFNSLLTILLKR 197

Query: 271 GKVEEVLSLYERGVAS-GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVV 329
           G+      +Y+  +++ G  PD   F++L + F  +G  D    +  ++   G +P++V 
Sbjct: 198 GRTNMAKKVYDEMLSTYGVTPDTFTFNILIRGFCMNGMVDDGFRIFNDLSRFGCEPDVVT 257

Query: 330 YNTLLEAMGKAGKPGLARSLFDEMVESG--LTPDEKTLTALIKIYGKARWAKDALELWER 387
           YNTL++ + +AGK  +A ++   M +    L P+  T T LI+ Y   R  + AL ++E 
Sbjct: 258 YNTLVDGLCRAGKVTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKALAVFEE 317

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           M       + I YNTL+    +    E+ + + E         PD  ++  +++ +   G
Sbjct: 318 MVNQGLKANNITYNTLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMHCHCHAG 377

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCL---GKARRIDDLV 488
           N+D+A+++FE MSEL +  +    + L++ L   G   + +DL+
Sbjct: 378 NLDDALKVFERMSELKIQPDSATYSALVRSLCQGGHYEKAEDLL 421



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 130/288 (45%), Gaps = 52/288 (18%)

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY------ERGVASGWKPDPI 293
           +A+++F    + G    E +Y ++L++  ++  +    +         RG+    K +  
Sbjct: 94  KALQFFNWAQEMGYTHTEQSYFSMLEILGRNRHLNTARNFLFSIEKRSRGIV---KLEAR 150

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
            F+ L + F  +G +     V   MKS GV P++V +N+LL  + K G+  +A+ ++DEM
Sbjct: 151 FFNSLMRNFNRAGLFQESIKVFTIMKSHGVSPSVVTFNSLLTILLKRGRTNMAKKVYDEM 210

Query: 354 VES-GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           + + G+TPD  T   LI+ +                                  C + G+
Sbjct: 211 LSTYGVTPDTFTFNILIRGF----------------------------------CMN-GM 235

Query: 413 VEEAERLFEDMKLSDY-CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN--VM 469
           V++  R+F D  LS + C+PD  +Y  +++     G V  A  + + M +  V +N  V+
Sbjct: 236 VDDGFRIFND--LSRFGCEPDVVTYNTLVDGLCRAGKVTVAYNVVKGMGKKSVDLNPNVV 293

Query: 470 GCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCE 517
             T LI+     R I+  + VF   +++G+K ++     L+    LCE
Sbjct: 294 TYTTLIRGYCAKREIEKALAVFEEMVNQGLKANNITYNTLIK--GLCE 339



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 85/363 (23%), Positives = 157/363 (43%), Gaps = 20/363 (5%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSN-EIELDNITYS 226
           +K+   F  + +Q L     I YN  +K L   R+F+ I+ +      +     D  T++
Sbjct: 309 EKALAVFEEMVNQGL-KANNITYNTLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFN 367

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG---KVEEVL-SLYER 282
           T++ C       D+A++ FERM +  + PD  TYSA++    + G   K E++L  L ER
Sbjct: 368 TLMHCHCHAGNLDDALKVFERMSELKIQPDSATYSALVRSLCQGGHYEKAEDLLDKLLER 427

Query: 283 GV---ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQ--PNLVVYNTLLEAM 337
            +     G KP   A++ + K   E+G         +++   G Q  P+   Y TL+   
Sbjct: 428 KILLSGDGCKPLVAAYNPIFKYLCETGKTKKAEKAFRQLMRRGTQDPPS---YKTLIMGH 484

Query: 338 GKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDF 397
            K G       L   M+     PD +T  +LI           AL+  E+M  +    + 
Sbjct: 485 CKEGTFESGYELLVLMLRKDFXPDFETYESLINGLLHMDKPLLALQSLEKMLRSSHRPNS 544

Query: 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE 457
             ++++L    + G   E+  L + M   +  +  ++S   +  ++G+G N D A +L  
Sbjct: 545 STFHSILAKLLEQGRASESASLIQLMLDKNIRQNLSFSTGCVRLLFGAGMN-DKAFQLVH 603

Query: 458 EMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCE 517
            +   G ++ +     LI+ L   R++    ++   S++     D  LC  +  +  LCE
Sbjct: 604 LLYGKGYSVKMEE---LIRYLCHCRKVIQGSKLLLFSLESHQFVDMDLCNTV--IFQLCE 658

Query: 518 TSE 520
            ++
Sbjct: 659 INK 661


>gi|297800016|ref|XP_002867892.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
 gi|297313728|gb|EFH44151.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
          Length = 658

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 173/353 (49%), Gaps = 13/353 (3%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           ++    + ++S+   P   + YNV +  L        + +L + M       + +TY+T+
Sbjct: 240 EAVLLLDEMQSEGCSP-SPVIYNVLIDGLCKKGDLSRVTKLVDNMFLKGCFPNEVTYNTL 298

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEE----VLSLYERGV 284
           I         D+A+   ERM  +  +P++VTY  +++   K  +  +    ++S+ ERG 
Sbjct: 299 IHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRAMDGARLLISMEERG- 357

Query: 285 ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344
              ++ +   +SVL     + G  +    + ++M   G +PN+VVY+ +++ + + GKP 
Sbjct: 358 ---YRLNQHIYSVLISGLFKEGKAEEAMTLWKKMAEKGCRPNIVVYSAVIDGLCREGKPN 414

Query: 345 LARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
            A+ + + M+ SG  P+  T ++L+K + K   +++A+++W  M E     +   Y+ L+
Sbjct: 415 EAKEILNGMISSGCLPNVYTYSSLMKGFFKTGLSEEAIQVWREMDETGCSRNEFCYSVLI 474

Query: 405 NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM---SE 461
           +    +G V+EA  ++  M L+   KPD  +Y++M+      G++D A++L+ EM    E
Sbjct: 475 DGLCGVGRVKEAMMVWSKM-LTIGIKPDTVAYSSMIKGLCGIGSMDAALKLYHEMLCQEE 533

Query: 462 LGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVS 514
                +V+    L+  L   + +   V +    +DRG  PD   C   L+ +S
Sbjct: 534 PKSQPDVVTYNILLDGLCMQKDVSRAVDLLNCMLDRGCDPDVITCNTFLNTLS 586



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 84/347 (24%), Positives = 152/347 (43%), Gaps = 36/347 (10%)

Query: 191 NVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYK 250
           NV +    + R  +  + + N  ++  I  + ++++ +I    +    D AIE F  M +
Sbjct: 156 NVIINEGLYHRGLEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLGFVDRAIEVFRGMPE 215

Query: 251 TGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDG 310
              +PD  TY  ++D   K  +++E + L +   + G  P P+ ++VL     + GD   
Sbjct: 216 KKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLSR 275

Query: 311 IRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK 370
           +  ++  M   G  PN V YNTL+  +   GK   A SL + MV S   P++ T   LI 
Sbjct: 276 VTKLVDNMFLKGCFPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLIN 335

Query: 371 IYGKARWAKD-----------------------------------ALELWERMRENKWPM 395
              K R A D                                   A+ LW++M E     
Sbjct: 336 GLVKQRRAMDGARLLISMEERGYRLNQHIYSVLISGLFKEGKAEEAMTLWKKMAEKGCRP 395

Query: 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIEL 455
           + ++Y+ +++     G   EA+ +   M +S  C P+ Y+Y++++  +   G  + AI++
Sbjct: 396 NIVVYSAVIDGLCREGKPNEAKEILNGM-ISSGCLPNVYTYSSLMKGFFKTGLSEEAIQV 454

Query: 456 FEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           + EM E G + N    + LI  L    R+ + + V+   +  G+KPD
Sbjct: 455 WREMDETGCSRNEFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPD 501


>gi|222612706|gb|EEE50838.1| hypothetical protein OsJ_31258 [Oryza sativa Japonica Group]
          Length = 897

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 141/293 (48%), Gaps = 1/293 (0%)

Query: 210 ANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAK 269
           A  M+    EL+ + ++T+I          EA E +E M   G  PD  TYS ++    K
Sbjct: 283 ARAMLGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCK 342

Query: 270 SGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVV 329
            G++   + L       G+ P+ + ++++   F ++G +D  R +L+EM + G+  N   
Sbjct: 343 LGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQG 402

Query: 330 YNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMR 389
           YN ++ A+ K G+   A  L  EM   G  PD  +   +I         ++A  ++E + 
Sbjct: 403 YNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLL 462

Query: 390 ENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNV 449
           E     + I YNT+++     G  ++A RL ++M L   C  D  SY  ++      GNV
Sbjct: 463 EEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHG-CSLDVVSYNGLIKAMCKDGNV 521

Query: 450 DNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           D ++ L EEM+E G+  N +    LI  L K RR+ D + +    +++G+ PD
Sbjct: 522 DRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPD 574



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/274 (24%), Positives = 122/274 (44%), Gaps = 1/274 (0%)

Query: 183 FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
           F    + Y + + S      +     L  EM +  + L++  Y+ +I    +    DEA+
Sbjct: 361 FAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAM 420

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
              + M   G  PD  +Y+ I+     + ++EE   ++E  +  G   + I ++ +    
Sbjct: 421 GLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHAL 480

Query: 303 GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
              G +     + +EM   G   ++V YN L++AM K G    +  L +EM E G+ P+ 
Sbjct: 481 LRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNN 540

Query: 363 KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED 422
            +   LI    K R  +DALEL ++M       D + YNTL+N    +G +  A  L E 
Sbjct: 541 VSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEK 600

Query: 423 MKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELF 456
           +  ++   PD  +Y  +++ +     +D+A  L 
Sbjct: 601 LH-NENVHPDIITYNILISWHCKVRLLDDAAMLL 633



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 81/382 (21%), Positives = 153/382 (40%), Gaps = 51/382 (13%)

Query: 191 NVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYK 250
           + +   L   R+F L  ++ +    + +     T+        R    DEA+     M +
Sbjct: 131 SASQGGLPRARRFALYRRMVHR---DRVPPTTFTFGVAARALCRLGRADEALALLRGMAR 187

Query: 251 TGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDG 310
            G +PD V Y  ++      G V E  +L                               
Sbjct: 188 HGCVPDAVLYQTVIHALCDQGGVTEAATL------------------------------- 216

Query: 311 IRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK 370
               L EM  +G   ++  ++ ++  M   G+   A  L D M+  G  P   T   L++
Sbjct: 217 ----LNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQ 272

Query: 371 IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCK 430
              + R A +A  +  R+ E    ++ +L+NT++  C   G + EA  L+E M L   C+
Sbjct: 273 GLCRVRQADEARAMLGRVPE----LNVVLFNTVIGGCLAEGKLAEATELYETMGLKG-CQ 327

Query: 431 PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRV 490
           PD ++Y+ +++     G + +A+ L  EM + G A NV+  T ++    K    DD   +
Sbjct: 328 PDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRAL 387

Query: 491 FGVSIDRGVKPDDRLCGCLLSVVSLCETS---EDVGKVITCLQQA-NPKLVAFLNLIED- 545
                 +G+  + +  G    + +LC+     E +G +     Q  NP + ++  +I   
Sbjct: 388 LEEMSAKGLTLNSQ--GYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHL 445

Query: 546 -NSTGFENIKEEFRNVIKDTEV 566
            N+   E  +  F N++++  V
Sbjct: 446 CNNEQMEEAEHMFENLLEEGVV 467



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 69/298 (23%), Positives = 131/298 (43%), Gaps = 3/298 (1%)

Query: 190 YNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERM 248
           Y++ M  L + GR    + +L  EM       + +TY+ ++    +  ++D+     E M
Sbjct: 333 YSILMHGLCKLGRIGSAV-RLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEM 391

Query: 249 YKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY 308
              GL  +   Y+ ++    K G+++E + L +   + G  PD  +++ +      +   
Sbjct: 392 SAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQM 451

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
           +   ++ + +   GV  N + YNT++ A+ + G+   A  L  EM+  G + D  +   L
Sbjct: 452 EEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGL 511

Query: 369 IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428
           IK   K      +L L E M E     + + YN L++       V +A  L + M L+  
Sbjct: 512 IKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQM-LNQG 570

Query: 429 CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
             PD  +Y  ++N     G +  A+ L E++    V  +++    LI    K R +DD
Sbjct: 571 LAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDD 628



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 100/212 (47%), Gaps = 3/212 (1%)

Query: 177 IKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCN 236
           ++SQ   P +   YN  +  L    Q +  E +   ++   +  + ITY+TII    R  
Sbjct: 426 MRSQGCNP-DICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDG 484

Query: 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS 296
            + +A+   + M   G   D V+Y+ ++    K G V+  L L E     G KP+ ++++
Sbjct: 485 RWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYN 544

Query: 297 VL-GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVE 355
           +L  ++  E    D +  + ++M + G+ P++V YNTL+  + K G    A +L +++  
Sbjct: 545 ILISELCKERRVRDALE-LSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHN 603

Query: 356 SGLTPDEKTLTALIKIYGKARWAKDALELWER 387
             + PD  T   LI  + K R   DA  L  R
Sbjct: 604 ENVHPDIITYNILISWHCKVRLLDDAAMLLNR 635



 Score = 42.4 bits (98), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 23/118 (19%), Positives = 57/118 (48%), Gaps = 1/118 (0%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           +S      +  + + P   + YN+ +  L   R+ +   +L+ +M++  +  D +TY+T+
Sbjct: 523 RSLVLLEEMAEKGIKP-NNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTL 581

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           I    +      A+   E+++   + PD +TY+ ++  + K   +++   L  R +A+
Sbjct: 582 INGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDAAMLLNRAMAA 639


>gi|12324362|gb|AAG52154.1|AC022355_15 unknown protein; 19199-17308 [Arabidopsis thaliana]
          Length = 558

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 152/315 (48%), Gaps = 1/315 (0%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           + Y V +  L       L   L N+M + +IE D + ++TII    +    D+A+  F+ 
Sbjct: 150 VTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKE 209

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M   G+ P+ VTYS+++      G+  +   L    +     P+ + F+ L   F + G 
Sbjct: 210 METKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGK 269

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
           +     +  +M    + P++  YN+L+       +   A+ +F+ MV     PD  T   
Sbjct: 270 FVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNT 329

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           LIK + K++  +D  EL+  M       D + Y TL+      G  + A+++F+ M +SD
Sbjct: 330 LIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQM-VSD 388

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
              PD  +Y+ +L+   + G ++ A+E+F+ M +  + +++   T +I+ + KA ++DD 
Sbjct: 389 GVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDG 448

Query: 488 VRVFGVSIDRGVKPD 502
             +F     +GVKP+
Sbjct: 449 WDLFCSLSLKGVKPN 463



 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 95/355 (26%), Positives = 168/355 (47%), Gaps = 9/355 (2%)

Query: 192 VTMKSLR----FGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           VT+ SL      G++      L ++MV      D IT++T+I      N   EA+   +R
Sbjct: 80  VTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDR 139

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M + G  P+ VTY  +++   K G ++   +L  +  A+  + D + F+ +     +   
Sbjct: 140 MVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRH 199

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
            D    + +EM++ G++PN+V Y++L+  +   G+   A  L  +M+E  + P+  T  A
Sbjct: 200 VDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNA 259

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           LI  + K     +A +L + M +     D   YN+L+N       +++A+++FE M +S 
Sbjct: 260 LIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFM-VSK 318

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
            C PD  +Y  ++  +     V++  ELF EMS  G+  + +  T LIQ L      D+ 
Sbjct: 319 DCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNA 378

Query: 488 VRVFGVSIDRGVKPDDRLCGCLLSVVSLCETS--EDVGKVITCLQQANPKLVAFL 540
            +VF   +  GV PD      LL    LC     E   +V   +Q++  KL  ++
Sbjct: 379 QKVFKQMVSDGVPPDIMTYSILLD--GLCNNGKLEKALEVFDYMQKSEIKLDIYI 431



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 147/317 (46%), Gaps = 1/317 (0%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + +N  + SL   R       L  EM +  I  + +TYS++I+C      + +A +  
Sbjct: 183 DVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLL 242

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
             M +  + P+ VT++A++D + K GK  E   L++  +     PD   ++ L   F   
Sbjct: 243 SDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMH 302

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
              D  + + + M S    P+L  YNTL++   K+ +      LF EM   GL  D  T 
Sbjct: 303 DRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTY 362

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
           T LI+         +A +++++M  +  P D + Y+ LL+   + G +E+A  +F+ M+ 
Sbjct: 363 TTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQK 422

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
           S+  K D Y YT M+      G VD+  +LF  +S  GV  NV+    +I  L   R + 
Sbjct: 423 SEI-KLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQ 481

Query: 486 DLVRVFGVSIDRGVKPD 502
           +   +     + G  PD
Sbjct: 482 EAYALLKKMKEDGPLPD 498



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 125/258 (48%), Gaps = 1/258 (0%)

Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS 261
           +F   E+L ++M+   I+ D  TY+++I      +  D+A + FE M      PD  TY+
Sbjct: 269 KFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYN 328

Query: 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
            ++  + KS +VE+   L+      G   D + ++ L +     GD D  + V ++M S 
Sbjct: 329 TLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSD 388

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
           GV P+++ Y+ LL+ +   GK   A  +FD M +S +  D    T +I+   KA    D 
Sbjct: 389 GVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDG 448

Query: 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
            +L+  +       + + YNT+++      L++EA  L + MK  D   PD+ +Y  ++ 
Sbjct: 449 WDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMK-EDGPLPDSGTYNTLIR 507

Query: 442 IYGSGGNVDNAIELFEEM 459
            +   G+   + EL  EM
Sbjct: 508 AHLRDGDKAASAELIREM 525



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 114/243 (46%), Gaps = 3/243 (1%)

Query: 168 QKSYFFFNWIKSQNLFP-METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
            K+   F ++ S++ FP ++T  YN  +K     ++ +   +L  EM    +  D +TY+
Sbjct: 306 DKAKQMFEFMVSKDCFPDLDT--YNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYT 363

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T+I         D A + F++M   G+ PD +TYS +LD    +GK+E+ L +++    S
Sbjct: 364 TLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKS 423

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
             K D   ++ + +   ++G  D    +   +   GV+PN+V YNT++  +        A
Sbjct: 424 EIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEA 483

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  +M E G  PD  T   LI+ + +      + EL   MR  ++  D      + NM
Sbjct: 484 YALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVANM 543

Query: 407 CAD 409
             D
Sbjct: 544 LHD 546



 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 98/215 (45%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN  +       +    +Q+   MVS +   D  TY+T+I    +    ++  E F  M 
Sbjct: 292 YNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMS 351

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
             GL+ D VTY+ ++      G  +    ++++ V+ G  PD + +S+L      +G  +
Sbjct: 352 HRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLE 411

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               V   M+   ++ ++ +Y T++E M KAGK      LF  +   G+ P+  T   +I
Sbjct: 412 KALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMI 471

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
                 R  ++A  L ++M+E+    D   YNTL+
Sbjct: 472 SGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLI 506


>gi|326490085|dbj|BAJ94116.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 641

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 96/368 (26%), Positives = 162/368 (44%), Gaps = 40/368 (10%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + YN  +K L   +++  +E+L  EMV      +  T++T+I    R  LF++  E  
Sbjct: 212 DIVSYNAVLKGLCMAKRWDDVEELMVEMVRVGCPPNVATFNTLIAYLCRNGLFEQVHEAL 271

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP--------------- 290
            +M + G  PD   Y+ I+D   K G  E    +  R  + G KP               
Sbjct: 272 SQMPEHGCTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSA 331

Query: 291 --------------------DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
                               D + F++L   F ++G  D +  +L++M   G  P+++ Y
Sbjct: 332 ERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITY 391

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA-RWAKDALELWERMR 389
            T++    K G    A  L   M   G  P+  + T ++K   +A RW  DA EL   M 
Sbjct: 392 TTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWV-DAQELISHMI 450

Query: 390 ENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNV 449
           +     + + +NTL+N     GLVE+A  L + M L + C PD  SY+ +++  G  G  
Sbjct: 451 QQGCLPNPVTFNTLINFMCKKGLVEQAIELLKQM-LVNGCSPDLISYSTVIDGLGKAGKT 509

Query: 450 DNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCL 509
           + A+EL   M   G+  N +  + +   L +  R D ++++F    D  V+ D  L   +
Sbjct: 510 EEALELLNVMINKGITPNTIIYSSMASALSREGRTDKIIQMFDSIQDATVRSDAALYNAV 569

Query: 510 LSVVSLCE 517
           +S  SLC+
Sbjct: 570 IS--SLCK 575



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 150/305 (49%), Gaps = 4/305 (1%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
            + YN  +K L    +++  E L  EM   +  LD++T++ ++    +  L D  IE  E
Sbjct: 318 VVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLE 377

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
           +M + G +PD +TY+ +++ + K G V+E + L +   A G KP+ I+++++ K    + 
Sbjct: 378 QMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAE 437

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
            +   + ++  M   G  PN V +NTL+  M K G    A  L  +M+ +G +PD  + +
Sbjct: 438 RWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLVEQAIELLKQMLVNGCSPDLISYS 497

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
            +I   GKA   ++ALEL   M       + I+Y+++ +  +  G  ++  ++F+ ++ +
Sbjct: 498 TVIDGLGKAGKTEEALELLNVMINKGITPNTIIYSSMASALSREGRTDKIIQMFDSIQDA 557

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL---GKARR 483
              + D   Y A+++        D AI+ F  M   G   N    T LI+ L   G  R 
Sbjct: 558 TV-RSDAALYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTILIRGLASEGLVRE 616

Query: 484 IDDLV 488
             DL+
Sbjct: 617 AQDLL 621



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 130/281 (46%), Gaps = 5/281 (1%)

Query: 222 NITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYE 281
           N+  S I  C + C   DE +E   ++   G  PD V+Y+A+L     + + ++V  L  
Sbjct: 182 NLVVSAI--CEQGC--VDEGVELLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDDVEELMV 237

Query: 282 RGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG 341
             V  G  P+   F+ L      +G ++ +   L +M   G  P+L +Y T+++ + K G
Sbjct: 238 EMVRVGCPPNVATFNTLIAYLCRNGLFEQVHEALSQMPEHGCTPDLRMYATIIDGICKDG 297

Query: 342 KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYN 401
              +A  +   M   GL P+      ++K    A   ++A +L   M +   P+D + +N
Sbjct: 298 HHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFN 357

Query: 402 TLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461
            L++     GLV+    L E M L   C PD  +YT ++N +   G VD A+ L + MS 
Sbjct: 358 ILVDFFCQNGLVDRVIELLEQM-LEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSA 416

Query: 462 LGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            G   N +  T +++ L +A R  D   +    I +G  P+
Sbjct: 417 CGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPN 457



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 70/302 (23%), Positives = 141/302 (46%), Gaps = 1/302 (0%)

Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS 261
             ++   + + M S  ++ + + Y+T++        ++EA +    M++     D+VT++
Sbjct: 298 HHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFN 357

Query: 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
            ++D + ++G V+ V+ L E+ +  G  PD I ++ +   F + G  D    +L+ M + 
Sbjct: 358 ILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSAC 417

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
           G +PN + Y  +L+ + +A +   A+ L   M++ G  P+  T   LI    K    + A
Sbjct: 418 GCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLVEQA 477

Query: 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
           +EL ++M  N    D I Y+T+++     G  EEA  L   M ++    P+   Y++M +
Sbjct: 478 IELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVM-INKGITPNTIIYSSMAS 536

Query: 442 IYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
                G  D  I++F+ + +  V  +      +I  L K    D  +  F   +  G  P
Sbjct: 537 ALSREGRTDKIIQMFDSIQDATVRSDAALYNAVISSLCKRWETDRAIDFFAYMVSNGCMP 596

Query: 502 DD 503
           ++
Sbjct: 597 NE 598



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 123/276 (44%), Gaps = 1/276 (0%)

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
            I+  A R   F  A+   + ++  G   D    + ++    + G V+E + L  +  + 
Sbjct: 148 VILEAACRGGGFRSAVRALQVLHAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSF 207

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +PD ++++ + K    +  +D +  ++ EM  +G  PN+  +NTL+  + + G     
Sbjct: 208 GCEPDIVSYNAVLKGLCMAKRWDDVEELMVEMVRVGCPPNVATFNTLIAYLCRNGLFEQV 267

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
                +M E G TPD +    +I    K    + A ++  RM       + + YNT+L  
Sbjct: 268 HEALSQMPEHGCTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKG 327

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
                  EEAE L  +M   D C  D+ ++  +++ +   G VD  IEL E+M E G   
Sbjct: 328 LCSAERWEEAEDLLAEMFQED-CPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIP 386

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           +V+  T +I    K   +D+ V +       G KP+
Sbjct: 387 DVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPN 422



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 100/205 (48%), Gaps = 4/205 (1%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
           TI Y + +K L    ++   ++L + M+      + +T++T+I    +  L ++AIE  +
Sbjct: 423 TISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLVEQAIELLK 482

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
           +M   G  PD ++YS ++D   K+GK EE L L    +  G  P+ I +S +       G
Sbjct: 483 QMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNTIIYSSMASALSREG 542

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
             D I  +   ++   V+ +  +YN ++ ++ K  +   A   F  MV +G  P+E T T
Sbjct: 543 RTDKIIQMFDSIQDATVRSDAALYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYT 602

Query: 367 ALIKIY---GKARWAKDAL-ELWER 387
            LI+     G  R A+D L EL  R
Sbjct: 603 ILIRGLASEGLVREAQDLLSELCSR 627



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 103/204 (50%), Gaps = 2/204 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           + I+Y+ ++    R   + +A E    M + G +P+ VT++ +++   K G VE+ + L 
Sbjct: 422 NTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLVEQAIELL 481

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
           ++ + +G  PD I++S +    G++G  +    +L  M + G+ PN ++Y+++  A+ + 
Sbjct: 482 KQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNTIIYSSMASALSRE 541

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD-ALELWERMRENKWPMDFIL 399
           G+      +FD + ++ +  D     A+I    K RW  D A++ +  M  N    +   
Sbjct: 542 GRTDKIIQMFDSIQDATVRSDAALYNAVISSLCK-RWETDRAIDFFAYMVSNGCMPNEST 600

Query: 400 YNTLLNMCADIGLVEEAERLFEDM 423
           Y  L+   A  GLV EA+ L  ++
Sbjct: 601 YTILIRGLASEGLVREAQDLLSEL 624



 Score = 39.3 bits (90), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 26/135 (19%), Positives = 60/135 (44%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + I Y+  +  L    + +   +L N M++  I  + I YS++ +   R    D+ I+ F
Sbjct: 492 DLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNTIIYSSMASALSREGRTDKIIQMF 551

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           + +    +  D   Y+A++    K  + +  +  +   V++G  P+   +++L +     
Sbjct: 552 DSIQDATVRSDAALYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTILIRGLASE 611

Query: 306 GDYDGIRYVLQEMKS 320
           G     + +L E+ S
Sbjct: 612 GLVREAQDLLSELCS 626


>gi|357127305|ref|XP_003565323.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Brachypodium distachyon]
          Length = 746

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 146/299 (48%), Gaps = 2/299 (0%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           TY+ ++     C     A+    RM +  ++P  +TY A++D   + G++E+   + E  
Sbjct: 385 TYNVLLHGLLLCGRAKAAMGVMRRMERAEVVPGVMTYGAVVDGLVRCGRLEDACKVIEEM 444

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
            + G  P+   FS +   F + G+ D    V   M + G++PN+V+Y+ +++ + + GK 
Sbjct: 445 RSKGLVPNEFVFSPVITGFCKLGEVDRASRVWDTMVAAGIKPNVVLYSAMIDGLARCGKM 504

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
             A  LF EM+E+   P+  T +++++ Y +   +  AL  WE M       + + Y+ L
Sbjct: 505 TEAELLFREMIEAKCVPNIMTYSSMVRGYFQIGDSSQALSFWEDMLRIGCTPNAVTYSVL 564

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           +N   ++G  ++A  +++ M L   C PD  +YT+M+  +   G VD  + LF +M   G
Sbjct: 565 INGLCNVGRSKDAMMVWKHM-LGRGCVPDTIAYTSMIKGFCVSGMVDAGLRLFYDMLARG 623

Query: 464 -VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSED 521
               +V+    L+  L +A+ +   + +    +D+   PD   C   L  + + +  ++
Sbjct: 624 DTHPDVICYNVLLDGLLRAKDLPRAMDLLNQMLDQACDPDTVTCNTFLREIEVGQKGQE 682



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 114/495 (23%), Positives = 201/495 (40%), Gaps = 51/495 (10%)

Query: 29  PTRRSHPIKINISCNSKSSENVAAESPNPETKTLSLSEQLKPLSSTTLSPTKNDRTPLLS 88
           P  R HP      C+S    + +++  +P      L+ +L P +    +PT      LLS
Sbjct: 128 PNPRFHPAAAARLCHSDHFVSSSSDDNDPP-----LAHELFPAAG---APT------LLS 173

Query: 89  KPKSTWVNPTKPRRSVLSLQRQKR------------STYSYNPR-VRDLKLFARKLNDCD 135
             +S   +P+    SVL   R+              +  S +PR +  L+LF R      
Sbjct: 174 VARSLANSPSPSAASVLGFLRRLPTDASPHLFPHLIAALSRSPRPLLALRLFLRPPTSAA 233

Query: 136 NTEEAFLRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMK 195
            T  +F  A+   P  P    A              FF + ++         + +N+ +K
Sbjct: 234 ITHHSFNSALLRFPLPPHLLPA--------------FFSHSLRRFTRLAPTLLSFNLLLK 279

Query: 196 ---SLRFGRQFQLIEQLANEMVSNEIEL-----DNITYSTIITCAKRCNLFDEAIEWFER 247
              S    R  QL  +LA  +V   I       D  TYST+++        D+A+     
Sbjct: 280 CVCSSLVPRNHQLYLELALRVVHRSIPAWKLVPDKFTYSTVVSALADAGRVDDAVALVHE 339

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M   G++  E  ++ +L    ++G V     L+      G  P    ++VL       G 
Sbjct: 340 MVVDGVVAAE-AFNPVLGAMLRTGDVTGAAKLFSFMQLKGCAPSAATYNVLLHGLLLCGR 398

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
                 V++ M+   V P ++ Y  +++ + + G+   A  + +EM   GL P+E   + 
Sbjct: 399 AKAAMGVMRRMERAEVVPGVMTYGAVVDGLVRCGRLEDACKVIEEMRSKGLVPNEFVFSP 458

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           +I  + K      A  +W+ M       + +LY+ +++  A  G + EAE LF +M +  
Sbjct: 459 VITGFCKLGEVDRASRVWDTMVAAGIKPNVVLYSAMIDGLARCGKMTEAELLFREM-IEA 517

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
            C P+  +Y++M+  Y   G+   A+  +E+M  +G   N +  + LI  L    R  D 
Sbjct: 518 KCVPNIMTYSSMVRGYFQIGDSSQALSFWEDMLRIGCTPNAVTYSVLINGLCNVGRSKDA 577

Query: 488 VRVFGVSIDRGVKPD 502
           + V+   + RG  PD
Sbjct: 578 MMVWKHMLGRGCVPD 592



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/304 (22%), Positives = 136/304 (44%), Gaps = 1/304 (0%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F++++ +   P     YNV +  L    + +    +   M   E+    +TY  ++   
Sbjct: 370 LFSFMQLKGCAPSAAT-YNVLLHGLLLCGRAKAAMGVMRRMERAEVVPGVMTYGAVVDGL 428

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            RC   ++A +  E M   GL+P+E  +S ++  + K G+V+    +++  VA+G KP+ 
Sbjct: 429 VRCGRLEDACKVIEEMRSKGLVPNEFVFSPVITGFCKLGEVDRASRVWDTMVAAGIKPNV 488

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           + +S +       G       + +EM      PN++ Y++++    + G    A S +++
Sbjct: 489 VLYSAMIDGLARCGKMTEAELLFREMIEAKCVPNIMTYSSMVRGYFQIGDSSQALSFWED 548

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M+  G TP+  T + LI        +KDA+ +W+ M       D I Y +++      G+
Sbjct: 549 MLRIGCTPNAVTYSVLINGLCNVGRSKDAMMVWKHMLGRGCVPDTIAYTSMIKGFCVSGM 608

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
           V+   RLF DM       PD   Y  +L+      ++  A++L  +M +     + + C 
Sbjct: 609 VDAGLRLFYDMLARGDTHPDVICYNVLLDGLLRAKDLPRAMDLLNQMLDQACDPDTVTCN 668

Query: 473 CLIQ 476
             ++
Sbjct: 669 TFLR 672



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 92/210 (43%), Gaps = 8/210 (3%)

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
            +R V + + +  + P+   Y+T++ A+  AG+   A +L  EMV  G+   E    A  
Sbjct: 297 ALRVVHRSIPAWKLVPDKFTYSTVVSALADAGRVDDAVALVHEMVVDGVVAAE----AFN 352

Query: 370 KIYGKARWAKD---ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
            + G      D   A +L+  M+          YN LL+     G  + A  +   M+ +
Sbjct: 353 PVLGAMLRTGDVTGAAKLFSFMQLKGCAPSAATYNVLLHGLLLCGRAKAAMGVMRRMERA 412

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
           +   P   +Y A+++     G +++A ++ EEM   G+  N    + +I    K   +D 
Sbjct: 413 EVV-PGVMTYGAVVDGLVRCGRLEDACKVIEEMRSKGLVPNEFVFSPVITGFCKLGEVDR 471

Query: 487 LVRVFGVSIDRGVKPDDRLCGCLLSVVSLC 516
             RV+   +  G+KP+  L   ++  ++ C
Sbjct: 472 ASRVWDTMVAAGIKPNVVLYSAMIDGLARC 501


>gi|302818914|ref|XP_002991129.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
 gi|300141060|gb|EFJ07775.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
          Length = 614

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/320 (27%), Positives = 151/320 (47%), Gaps = 6/320 (1%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           + YN  +  L   R+      L  +M       + +TY T+I    +     +A      
Sbjct: 262 VTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLAD 321

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M   G  PD + Y+ +++   K+ +V+E ++L  R V+ G KPD + +S +      S  
Sbjct: 322 MIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNR 381

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
            D    +L  +KS G  P++++Y+TL++ + KAGK   A  L++ M   G   D  T + 
Sbjct: 382 LDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYST 441

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           LI    KA    +A  L  RM     P   + YN+L+    D+  ++EA  L E+M+ S+
Sbjct: 442 LIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSN 501

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEE-----MSELGVAINVMGCTCLIQCLGKAR 482
            C P   +Y  +++       VD+A+ L E+     ++  G A++ +  + LI  L KA 
Sbjct: 502 -CAPSAVTYNILIHGMCRMERVDSAVVLLEQAKARCVAAGGTALDTIAYSSLIDGLCKAG 560

Query: 483 RIDDLVRVFGVSIDRGVKPD 502
           R+ + +  F   ID GV PD
Sbjct: 561 RVAEALDYFQEMIDNGVIPD 580



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/324 (25%), Positives = 148/324 (45%), Gaps = 8/324 (2%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           +T+ Y   +  L   ++      + +EM  +  E + +TY+++I    + N  D A E F
Sbjct: 78  DTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELF 137

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYE-------RGVASGWKPDPIAFSVL 298
           E M      P  VTY+ +LD   ++GK+E  ++L++         +     P+ I +SVL
Sbjct: 138 EHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCSPNVITYSVL 197

Query: 299 GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
                ++        +L+ MK+ G  P+++ Y  L++ + K  K   A  +  EM+++G 
Sbjct: 198 IDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGC 257

Query: 359 TPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAER 418
            P+  T  +L+    +AR   DAL L   M       + + Y TL++    +G V++A  
Sbjct: 258 VPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACA 317

Query: 419 LFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL 478
           +  DM +     PD   Y  ++N       VD +I L       G+  +V+  + +I  L
Sbjct: 318 MLADM-IDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGL 376

Query: 479 GKARRIDDLVRVFGVSIDRGVKPD 502
            ++ R+D+  R+      RG  PD
Sbjct: 377 CRSNRLDEACRLLLYVKSRGCPPD 400



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/320 (25%), Positives = 145/320 (45%), Gaps = 8/320 (2%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           Y   ++    G +    ++  +EM S  +  +    S +I    +     +A+  F  M 
Sbjct: 12  YAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDALRCFRAMQ 71

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
            +G++ D V Y+A+L    K  ++++ L++       G +P+ + ++ L     ++ + D
Sbjct: 72  GSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCKNNEPD 131

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMV-------ESGLTPDE 362
             + + + MKS+   P++V YNTLL+ + + GK   A +LF EM+       +   +P+ 
Sbjct: 132 RAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCSPNV 191

Query: 363 KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED 422
            T + LI    KA     A+EL E M+      D I Y  L++       V  A  +  +
Sbjct: 192 ITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLRE 251

Query: 423 MKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKAR 482
           M L   C P+  +Y ++L+       V +A+ L  +M+  G   NV+    LI  L K  
Sbjct: 252 M-LDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVG 310

Query: 483 RIDDLVRVFGVSIDRGVKPD 502
           R+ D   +    ID+G  PD
Sbjct: 311 RVKDACAMLADMIDKGGTPD 330



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 115/260 (44%), Gaps = 6/260 (2%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + YN+ +  L    Q      L    VS  I+ D +TYS++I    R N  DEA    
Sbjct: 330 DLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLL 389

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
             +   G  PD + YS ++D   K+GKV+E   LYE     G   D + +S L     ++
Sbjct: 390 LYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKA 449

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G  D    +L  M  +G  P+ + YN+L++ +        A  L +EM  S   P   T 
Sbjct: 450 GRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTY 509

Query: 366 TALIKIYGKARWAKDALELWERMR-----ENKWPMDFILYNTLLNMCADIGLVEEAERLF 420
             LI    +      A+ L E+ +          +D I Y++L++     G V EA   F
Sbjct: 510 NILIHGMCRMERVDSAVVLLEQAKARCVAAGGTALDTIAYSSLIDGLCKAGRVAEALDYF 569

Query: 421 EDMKLSDYCKPDNYSYTAML 440
           ++M + +   PD+ +Y+ +L
Sbjct: 570 QEM-IDNGVIPDHITYSILL 588



 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 94/394 (23%), Positives = 171/394 (43%), Gaps = 28/394 (7%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D  TY+ ++    R    D+A   F+ M    L+P+    S ++D   K+ +  + L  +
Sbjct: 8   DVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDALRCF 67

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
                SG   D + ++ L     +    D    +L EM+  G +PN+V YN+L++ + K 
Sbjct: 68  RAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCKN 127

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM-------RENKW 393
            +P  A+ LF+ M     +P   T   L+    +    + A+ L++ M        +++ 
Sbjct: 128 NEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDRC 187

Query: 394 PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAI 453
             + I Y+ L++       V +A  L E MK +  C PD  +YT +++       V  A 
Sbjct: 188 SPNVITYSVLIDGLCKANRVSQAVELLESMK-ARGCSPDVITYTILVDGLCKESKVAAAW 246

Query: 454 ELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVV 513
           E+  EM + G   N++    L+  L +ARR+ D + +      RG  P+    G L+   
Sbjct: 247 EVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLID-- 304

Query: 514 SLCETSEDVGKVI-TCLQQAN-------PKLVAFLNLIEDNSTGFENIKEEF----RNVI 561
            LC+    VG+V   C   A+       P L+ + N++ +     + + E      R V 
Sbjct: 305 GLCK----VGRVKDACAMLADMIDKGGTPDLMIY-NMLINGLCKADQVDESIALLRRAVS 359

Query: 562 KDTEVDARRPFCNCLIDICRNRNLNERAHELLYL 595
              + D    + + +  +CR+  L+E    LLY+
Sbjct: 360 GGIKPDV-VTYSSVIYGLCRSNRLDEACRLLLYV 392



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 115/255 (45%), Gaps = 8/255 (3%)

Query: 255 PDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL-GKMFGESGDYDGIRY 313
           PD  TY+A+L  + + G++++    ++   +    P+    S+L   +       D +R 
Sbjct: 7   PDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDALR- 65

Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYG 373
             + M+  G+  + V+Y  LL  + K  +   A ++  EM + G  P+  T  +LI    
Sbjct: 66  CFRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLC 125

Query: 374 KARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM------KLSD 427
           K      A EL+E M+  +     + YNTLL+     G +E A  LF++M       + D
Sbjct: 126 KNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDD 185

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
            C P+  +Y+ +++       V  A+EL E M   G + +V+  T L+  L K  ++   
Sbjct: 186 RCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAA 245

Query: 488 VRVFGVSIDRGVKPD 502
             V    +D G  P+
Sbjct: 246 WEVLREMLDAGCVPN 260



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 102/221 (46%), Gaps = 8/221 (3%)

Query: 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348
           +PD   ++ L + F   G+ D  +    EM+S  + PN+ + + L++ + KA +   A  
Sbjct: 6   QPDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDALR 65

Query: 349 LFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCA 408
            F  M  SG+  D    TAL+    K +    AL +   MR++    + + YN+L++   
Sbjct: 66  CFRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLC 125

Query: 409 DIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL------ 462
                + A+ LFE MK S  C P   +Y  +L+     G ++ A+ LF+EM +       
Sbjct: 126 KNNEPDRAQELFEHMK-SVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMD 184

Query: 463 -GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
              + NV+  + LI  L KA R+   V +      RG  PD
Sbjct: 185 DRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPD 225



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 94/206 (45%), Gaps = 6/206 (2%)

Query: 176 WIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRC 235
           ++KS+   P + I Y+  +  L    +      L   M  +  + D +TYST+I    + 
Sbjct: 391 YVKSRGC-PPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKA 449

Query: 236 NLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAF 295
              DEA     RM + G  P  +TY++++        ++E + L E    S   P  + +
Sbjct: 450 GRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTY 509

Query: 296 SVLGKMFGESGDYDGIRYVLQEMKSL-----GVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
           ++L          D    +L++ K+      G   + + Y++L++ + KAG+   A   F
Sbjct: 510 NILIHGMCRMERVDSAVVLLEQAKARCVAAGGTALDTIAYSSLIDGLCKAGRVAEALDYF 569

Query: 351 DEMVESGLTPDEKTLTALIKIYGKAR 376
            EM+++G+ PD  T + L++   K++
Sbjct: 570 QEMIDNGVIPDHITYSILLEGLKKSK 595



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 67/145 (46%), Gaps = 6/145 (4%)

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           P  T+ YN  +K L          +L  EM  +      +TY+ +I    R    D A+ 
Sbjct: 468 PPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAVV 527

Query: 244 WFER-----MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
             E+     +   G   D + YS+++D   K+G+V E L  ++  + +G  PD I +S+L
Sbjct: 528 LLEQAKARCVAAGGTALDTIAYSSLIDGLCKAGRVAEALDYFQEMIDNGVIPDHITYSIL 587

Query: 299 GKMFGESGDYDGIRY-VLQEMKSLG 322
            +   +S D   +R+ VL +M  LG
Sbjct: 588 LEGLKKSKDLHELRHLVLDQMVQLG 612



 Score = 53.1 bits (126), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 43/83 (51%)

Query: 429 CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLV 488
           C+PD Y+Y A+L  +  GG +D A   F+EM    +  NV  C+ LI  L KA+R  D +
Sbjct: 5   CQPDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDAL 64

Query: 489 RVFGVSIDRGVKPDDRLCGCLLS 511
           R F      G+  D  +   LLS
Sbjct: 65  RCFRAMQGSGIVADTVIYTALLS 87


>gi|357442727|ref|XP_003591641.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|92882355|gb|ABE86686.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355480689|gb|AES61892.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 827

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 90/319 (28%), Positives = 151/319 (47%), Gaps = 25/319 (7%)

Query: 154 RENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEM 213
           +E ++++   +K W ++   FNW  + N   +  I YN+ ++ L   R++ L+E L N+M
Sbjct: 126 KERSIILKQQVK-WDRALEIFNWF-NDNKLELNVIHYNIMIRILGRAREWALLEGLWNQM 183

Query: 214 VSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKV 273
            +  I   N TY T+I    +  L ++A+ W E M + G+ PDEVT   ++ +Y K+G+ 
Sbjct: 184 NARGIVATNSTYGTLIDVYSKGGLREDALFWLETMLEHGIEPDEVTMVIVVQLYKKAGEF 243

Query: 274 EEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY-----DGIRYVLQEMKSLGVQPNLV 328
           ++    + +     W         LG+    S  +     + +   L    S G      
Sbjct: 244 QKAEEFFRK-----WS--------LGEPLRPSNKHMMDAPESVERALFSNASFGSH---- 286

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            YNTL++  GKAG+   A   F +M++ G+ P   T   +I I G     ++   L  +M
Sbjct: 287 TYNTLIDTYGKAGQHKEASETFAKMLKQGIPPTTVTFNTMIHICGNHGRLEEVSSLLRKM 346

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
            E +   D   YNTL+++      ++ A + F+ MK S Y +PD  SY  +L  Y     
Sbjct: 347 GELRCSPDTRTYNTLISLHTKHNDIDMATKYFKRMKES-YLEPDPVSYRTLLYAYSIRKM 405

Query: 449 VDNAIELFEEMSELGVAIN 467
           V  A EL  EM E G+ I+
Sbjct: 406 VCEAEELITEMDEKGLEID 424



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 105/418 (25%), Positives = 170/418 (40%), Gaps = 61/418 (14%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           TY+T+I    +     EA E F +M K G+ P  VT++ ++ +    G++EEV SL  + 
Sbjct: 287 TYNTLIDTYGKAGQHKEASETFAKMLKQGIPPTTVTFNTMIHICGNHGRLEEVSSLLRKM 346

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
                 PD   ++ L  +  +  D D      + MK   ++P+ V Y TLL A       
Sbjct: 347 GELRCSPDTRTYNTLISLHTKHNDIDMATKYFKRMKESYLEPDPVSYRTLLYAYSIRKMV 406

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
             A  L  EM E GL  D+ T +AL ++Y +A   + +L LW +       M    Y   
Sbjct: 407 CEAEELITEMDEKGLEIDQFTQSALTRMYIEAGMPERSL-LWFQRFHRAGNMTSECYAAN 465

Query: 404 LNMCADIGLVEEAERLF----EDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           ++   + G + EAE++F    E   LS         +  M+  YG G   D A +LF+ M
Sbjct: 466 IDAYGERGHISEAEKVFLWCQERKNLSAV------EFNVMIKAYGVGKYYDKACQLFDSM 519

Query: 460 SELGVAINVMGCTCLIQCLGKARR--------------------------IDDLVR---- 489
            + GVA +    + LIQ L  A +                          I   V+    
Sbjct: 520 DKHGVAADRCSYSSLIQVLASADQPHIAKPYLKRMQVAGLVTNCIPYCAVISCFVKLGQL 579

Query: 490 -----VFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN-------PKLV 537
                V+   I  GVKPD  + G L++ +         G+V   +  AN       P   
Sbjct: 580 EMAEGVYKEMIGHGVKPDIIVYGVLINALY------GAGRVKEAISYANEIKRAGLPGNT 633

Query: 538 AFLNLIEDNSTGFENIKE--EFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELL 593
              N +    T   N++E  E   +++ +E        NC+I +   +++ E+A E+ 
Sbjct: 634 VIYNSLIKLYTKVGNLREAQETYRLLQSSEEGPAVYSSNCMIGLYTKQSMVEQAKEIF 691



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 144/296 (48%), Gaps = 8/296 (2%)

Query: 174 FNWIKS-QNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           F W +  +NL  +E   +NV +K+   G+ +    QL + M  + +  D  +YS++I   
Sbjct: 482 FLWCQERKNLSAVE---FNVMIKAYGVGKYYDKACQLFDSMDKHGVAADRCSYSSLIQVL 538

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
              +    A  + +RM   GL+ + + Y A++  + K G++E    +Y+  +  G KPD 
Sbjct: 539 ASADQPHIAKPYLKRMQVAGLVTNCIPYCAVISCFVKLGQLEMAEGVYKEMIGHGVKPDI 598

Query: 293 IAFSVL-GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
           I + VL   ++G     + I Y   E+K  G+  N V+YN+L++   K G    A+  + 
Sbjct: 599 IVYGVLINALYGAGRVKEAISYA-NEIKRAGLPGNTVIYNSLIKLYTKVGNLREAQETYR 657

Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411
            +  S   P   +   +I +Y K    + A E++E +++N    +F  +  +L +  +I 
Sbjct: 658 LLQSSEEGPAVYSSNCMIGLYTKQSMVEQAKEIFETLKKNGTANEFS-FAMMLCLYKNIE 716

Query: 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
             + A ++   M+  +    D+ SY  +L++Y + G    AIE+F++M    + ++
Sbjct: 717 RFDVAIQIANQMRKLELL-TDSLSYNIVLDLYATAGRPKEAIEIFKDMVTASIQLD 771



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/284 (22%), Positives = 135/284 (47%), Gaps = 2/284 (0%)

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
           L  + ++ +I        +D+A + F+ M K G+  D  +YS+++ V A + +       
Sbjct: 491 LSAVEFNVMIKAYGVGKYYDKACQLFDSMDKHGVAADRCSYSSLIQVLASADQPHIAKPY 550

Query: 280 YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
            +R   +G   + I +  +   F + G  +    V +EM   GV+P+++VY  L+ A+  
Sbjct: 551 LKRMQVAGLVTNCIPYCAVISCFVKLGQLEMAEGVYKEMIGHGVKPDIIVYGVLINALYG 610

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
           AG+   A S  +E+  +GL  +     +LIK+Y K    ++A E +  ++ ++       
Sbjct: 611 AGRVKEAISYANEIKRAGLPGNTVIYNSLIKLYTKVGNLREAQETYRLLQSSEEGPAVYS 670

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
            N ++ +     +VE+A+ +FE +K +     + +S+  ML +Y +    D AI++  +M
Sbjct: 671 SNCMIGLYTKQSMVEQAKEIFETLKKNG--TANEFSFAMMLCLYKNIERFDVAIQIANQM 728

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
            +L +  + +    ++     A R  + + +F   +   ++ DD
Sbjct: 729 RKLELLTDSLSYNIVLDLYATAGRPKEAIEIFKDMVTASIQLDD 772



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 142/348 (40%), Gaps = 37/348 (10%)

Query: 183 FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
            P  T+ +N  +       + + +  L  +M       D  TY+T+I+   + N  D A 
Sbjct: 316 IPPTTVTFNTMIHICGNHGRLEEVSSLLRKMGELRCSPDTRTYNTLISLHTKHNDIDMAT 375

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
           ++F+RM ++ L PD V+Y  +L  Y+    V E   L       G + D    S L +M+
Sbjct: 376 KYFKRMKESYLEPDPVSYRTLLYAYSIRKMVCEAEELITEMDEKGLEIDQFTQSALTRMY 435

Query: 303 GESG---------------------------DYDGIRYVLQEMKSLGV----QPNL--VV 329
            E+G                           D  G R  + E + + +    + NL  V 
Sbjct: 436 IEAGMPERSLLWFQRFHRAGNMTSECYAANIDAYGERGHISEAEKVFLWCQERKNLSAVE 495

Query: 330 YNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMR 389
           +N +++A G       A  LFD M + G+  D  + ++LI++   A     A    +RM+
Sbjct: 496 FNVMIKAYGVGKYYDKACQLFDSMDKHGVAADRCSYSSLIQVLASADQPHIAKPYLKRMQ 555

Query: 390 ENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNV 449
                 + I Y  +++    +G +E AE ++++M +    KPD   Y  ++N     G V
Sbjct: 556 VAGLVTNCIPYCAVISCFVKLGQLEMAEGVYKEM-IGHGVKPDIIVYGVLINALYGAGRV 614

Query: 450 DNAIELFEEMSELGVAINVMGCTCLIQC---LGKARRIDDLVRVFGVS 494
             AI    E+   G+  N +    LI+    +G  R   +  R+   S
Sbjct: 615 KEAISYANEIKRAGLPGNTVIYNSLIKLYTKVGNLREAQETYRLLQSS 662



 Score = 50.1 bits (118), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 45/220 (20%), Positives = 91/220 (41%), Gaps = 37/220 (16%)

Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS 261
           Q ++ E +  EM+ + ++ D I Y  +I          EAI +   + + GL  + V Y+
Sbjct: 578 QLEMAEGVYKEMIGHGVKPDIIVYGVLINALYGAGRVKEAISYANEIKRAGLPGNTVIYN 637

Query: 262 AILDVYAKSGKVEEVLSLY------ERGVA----------------------------SG 287
           +++ +Y K G + E    Y      E G A                              
Sbjct: 638 SLIKLYTKVGNLREAQETYRLLQSSEEGPAVYSSNCMIGLYTKQSMVEQAKEIFETLKKN 697

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
              +  +F+++  ++     +D    +  +M+ L +  + + YN +L+    AG+P  A 
Sbjct: 698 GTANEFSFAMMLCLYKNIERFDVAIQIANQMRKLELLTDSLSYNIVLDLYATAGRPKEAI 757

Query: 348 SLFDEMVESGLTPDE---KTLTALIKIYGKARWAKDALEL 384
            +F +MV + +  D+   ++L  L+  YG +R   D L++
Sbjct: 758 EIFKDMVTASIQLDDCSLRSLRTLLLRYGASRQGVDNLQV 797


>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 138/277 (49%), Gaps = 1/277 (0%)

Query: 215 SNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVE 274
            N ++ + + YSTII    +    ++A + +  M   G+ P+ VTYSA++  +   G+++
Sbjct: 190 GNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGQLK 249

Query: 275 EVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLL 334
           + + L+ + +    KPD   F++L   F + G     + V   M   G++PN+V Y +L+
Sbjct: 250 DAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLM 309

Query: 335 EAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWP 394
           +      +   A+S+   M + G+ PD ++   LI  + K +   +A+ L++ M      
Sbjct: 310 DGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHII 369

Query: 395 MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIE 454
            D + YN+L++    +G +  A +L ++M       PD  +Y+++L+       VD AI 
Sbjct: 370 PDVVTYNSLIDGLCKLGKISYALKLVDEMH-DRGVPPDIITYSSILDALCKNHQVDKAIA 428

Query: 455 LFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           L  ++ + G+  N+   T LI  L K  R++D   +F
Sbjct: 429 LLTKLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIF 465



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/322 (25%), Positives = 147/322 (45%), Gaps = 1/322 (0%)

Query: 181 NLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDE 240
           NL     + Y+  +  +   +       L +EMVS  I  + +TYS +I+         +
Sbjct: 191 NLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGQLKD 250

Query: 241 AIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGK 300
           AI+ F +M    + PD  T++ ++D + K GK++E  +++   +  G KP+ + +  L  
Sbjct: 251 AIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMD 310

Query: 301 MFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTP 360
            +    + +  + +L  M   GV P++  YN L++   K  K   A +LF EM    + P
Sbjct: 311 GYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIP 370

Query: 361 DEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLF 420
           D  T  +LI    K      AL+L + M +   P D I Y+++L+       V++A  L 
Sbjct: 371 DVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALL 430

Query: 421 EDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK 480
             +K     +P+ Y+YT +++    GG +++A  +FE++   G  I V   T +I     
Sbjct: 431 TKLK-DQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCN 489

Query: 481 ARRIDDLVRVFGVSIDRGVKPD 502
               D+ + +     D    PD
Sbjct: 490 KGLFDEALALLSKMKDNSCIPD 511



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 97/403 (24%), Positives = 176/403 (43%), Gaps = 58/403 (14%)

Query: 225 YSTIITCAKRCNL--FDEAIEWFERMYK-TGLMPDEVTYSAILDVYAKSGKVEEVLSLYE 281
           Y T+++ +++      +  +  F+  ++  G  P+ +T++ ++      G++ + L  ++
Sbjct: 92  YHTVLSLSQQMEFEGINPVLFHFQHPHQLMGYHPNTITFTTLIKGLCLKGQIHQALLFHD 151

Query: 282 RGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG 341
             VA G++ D + +  L     + G+      +L+ +    VQPN+V+Y+T+++ M K  
Sbjct: 152 NVVAMGFQLDQVGYGTLIHGLCKVGETRAALDLLRRVDGNLVQPNVVMYSTIIDGMCKDK 211

Query: 342 KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM-RENKWPMDFILY 400
               A  L+ EMV  G++P+  T +ALI  +      KDA++L+ +M  EN  P D   +
Sbjct: 212 HVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGQLKDAIDLFNKMILENIKP-DVYTF 270

Query: 401 NTLLN-MCADIGLVEEAERLFEDMK--------------LSDYC---------------- 429
           N L++  C D G ++E + +F  M               +  YC                
Sbjct: 271 NILVDGFCKD-GKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTMS 329

Query: 430 ----KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
                PD  SY  +++ +     VD A+ LF+EM    +  +V+    LI  L K  +I 
Sbjct: 330 QRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGKIS 389

Query: 486 DLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCL-----QQANPKLVAFL 540
             +++     DRGV PD      +L   +LC+  + V K I  L     Q   P +  + 
Sbjct: 390 YALKLVDEMHDRGVPPDIITYSSILD--ALCKNHQ-VDKAIALLTKLKDQGIRPNMYTYT 446

Query: 541 NLI---------EDNSTGFENIKEEFRNVIKDTEVDARRPFCN 574
            LI         ED    FE++  +  N+  +T       FCN
Sbjct: 447 ILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCN 489



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 98/198 (49%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           +Y+ +I    +    DEA+  F+ M+   ++PD VTY++++D   K GK+   L L +  
Sbjct: 339 SYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGKISYALKLVDEM 398

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
              G  PD I +S +     ++   D    +L ++K  G++PN+  Y  L++ + K G+ 
Sbjct: 399 HDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGIRPNMYTYTILIDGLCKGGRL 458

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
             A ++F++++  G      T T +I  +       +AL L  +M++N    D + Y  +
Sbjct: 459 EDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEALALLSKMKDNSCIPDAVTYEII 518

Query: 404 LNMCADIGLVEEAERLFE 421
           +    D    ++AE+L E
Sbjct: 519 IRSLFDKDENDKAEKLRE 536



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 87/372 (23%), Positives = 160/372 (43%), Gaps = 34/372 (9%)

Query: 219 ELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS 278
           +++ I YS+I T     N   +A   F R+ +    P  + ++ IL    KS     VLS
Sbjct: 38  KINFIPYSSISTTFHNNNDVVDAFSLFSRLLRQNPTPPAIEFNKILGSLVKSKHYHTVLS 97

Query: 279 LYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMG 338
           L ++    G  P    F                       + +G  PN + + TL++ + 
Sbjct: 98  LSQQMEFEGINPVLFHFQ-------------------HPHQLMGYHPNTITFTTLIKGLC 138

Query: 339 KAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFI 398
             G+   A    D +V  G   D+     LI    K    + AL+L  R+  N    + +
Sbjct: 139 LKGQIHQALLFHDNVVAMGFQLDQVGYGTLIHGLCKVGETRAALDLLRRVDGNLVQPNVV 198

Query: 399 LYNTLLN-MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE 457
           +Y+T+++ MC D   V +A  L+ +M +S    P+  +Y+A+++ + + G + +AI+LF 
Sbjct: 199 MYSTIIDGMCKD-KHVNDAFDLYSEM-VSKGISPNVVTYSALISGFFTVGQLKDAIDLFN 256

Query: 458 EMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCE 517
           +M    +  +V     L+    K  ++ +   VF + + +G+KP+      L+    L +
Sbjct: 257 KMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVK 316

Query: 518 TSEDVGKVITCLQQ--ANPKLVAFLNLIEDNSTGFENIK--EEFRNVIKDTEVDARRPFC 573
                  ++  + Q   NP + ++  LI+    GF  IK  +E  N+ K+       P  
Sbjct: 317 EVNKAKSILYTMSQRGVNPDIQSYNILID----GFCKIKKVDEAMNLFKEMHHKHIIPDV 372

Query: 574 ---NCLID-ICR 581
              N LID +C+
Sbjct: 373 VTYNSLIDGLCK 384


>gi|297807691|ref|XP_002871729.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317566|gb|EFH47988.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 504

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 168/332 (50%), Gaps = 5/332 (1%)

Query: 172 FFFNWIKSQNLFPMETIF-YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIIT 230
            FF+ ++ +   P+ +I  ++  + ++   +++ ++  L  +M    I  +  T + ++ 
Sbjct: 68  LFFHMVQCR---PLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLN 124

Query: 231 CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
           C  RC+    A+ +  +M K G  PD VT+ ++L+ + +  ++ + L +++R V  G++P
Sbjct: 125 CFCRCSQLSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMVEMGYEP 184

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
           + + ++ +     +S   D    +L  M+  G++P+ V YN+L+  +  +G+   A  + 
Sbjct: 185 NVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGRWDDATRMV 244

Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
             M +  + PD  T  ALI    K     +A EL+E M       D + Y+ L+      
Sbjct: 245 SCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLLIYGLCMY 304

Query: 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG 470
             ++EAE++F  M +S  C PD  +Y+ ++N Y     V++ ++LF EMS+ GV  N + 
Sbjct: 305 SRLDEAEQMFGFM-VSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVT 363

Query: 471 CTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            T LIQ   +A +++    +F   +  GV P+
Sbjct: 364 YTVLIQGYCRAGKLNVAEEIFKWMVFCGVPPN 395



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 96/368 (26%), Positives = 153/368 (41%), Gaps = 44/368 (11%)

Query: 140 AFLRAITEIPHQPTRENALLILNSLKFWQKSY---FFFNWIKSQNLFPMETIFYNVTMKS 196
           +FL  + ++ H+P       +LN      + Y   + F+ +      P   + YN  +  
Sbjct: 137 SFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMVEMGYEP-NVVIYNTIIDG 195

Query: 197 LRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPD 256
           L   +Q      L N M  + I  D +TY+++I+       +D+A      M K  + PD
Sbjct: 196 LCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGRWDDATRMVSCMTKREIYPD 255

Query: 257 EVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQ 316
             T++A++D   K G++ E   LYE  +     PD + +S+L          D    +  
Sbjct: 256 VFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEQMFG 315

Query: 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
            M S G  P++V Y+ L+    K+ K      LF EM + G+  +  T T LI+ Y +A 
Sbjct: 316 FMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTVLIQGYCRAG 375

Query: 377 WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD--------- 427
               A E+++ M     P + I YN LL+   D G +E+A  +  DM+ S          
Sbjct: 376 KLNVAEEIFKWMVFCGVPPNIITYNVLLHGLCDNGKIEKALVILADMQKSGMDADIVTYN 435

Query: 428 ------------------YCK-------PDNYSYTA-MLNIYGSG--GNVDNAIELFEEM 459
                             YC        PD ++YTA ML +Y  G  G  D    LF +M
Sbjct: 436 IIIRGMCKAGEVADAWDLYCSLNLKGLTPDIWTYTAMMLGLYKKGLRGEAD---ALFRKM 492

Query: 460 SELGVAIN 467
            E G+  N
Sbjct: 493 KEDGILPN 500



 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 109/231 (47%), Gaps = 1/231 (0%)

Query: 272 KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYN 331
           K+++ L L+   V     P    FS L     +   YD + Y+ ++M+ LG+  NL   N
Sbjct: 61  KLDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCN 120

Query: 332 TLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN 391
            LL    +  +  LA S   +M++ G  PD  T  +L+  + +     DAL +++RM E 
Sbjct: 121 ILLNCFCRCSQLSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMVEM 180

Query: 392 KWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDN 451
            +  + ++YNT+++       V+ A  L   M++ D  +PD  +Y ++++   + G  D+
Sbjct: 181 GYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEV-DGIRPDAVTYNSLISGLCNSGRWDD 239

Query: 452 AIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           A  +   M++  +  +V     LI    K  RI +   ++   I R + PD
Sbjct: 240 ATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPD 290



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 97/203 (47%), Gaps = 13/203 (6%)

Query: 349 LFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM-- 406
           LF  MV+    P     + L+    K +     + LWE+M+    P +    N LLN   
Sbjct: 68  LFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFC 127

Query: 407 -CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
            C+ + L      L + MKL    +PD  ++ ++LN +  G  + +A+ +F+ M E+G  
Sbjct: 128 RCSQLSLA--LSFLGKMMKLGH--EPDIVTFGSLLNGFCRGDRIYDALYMFDRMVEMGYE 183

Query: 466 INVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETS--EDVG 523
            NV+    +I  L K++++D+ + +       G++PD      L+S   LC +   +D  
Sbjct: 184 PNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLIS--GLCNSGRWDDAT 241

Query: 524 KVITCL--QQANPKLVAFLNLIE 544
           ++++C+  ++  P +  F  LI+
Sbjct: 242 RMVSCMTKREIYPDVFTFNALID 264


>gi|296087509|emb|CBI34098.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/361 (25%), Positives = 159/361 (44%), Gaps = 54/361 (14%)

Query: 177 IKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCN 236
           I+ + L P    F    +   + G+  +  +   +EM+ + +  +N  Y+ +I    +  
Sbjct: 246 IQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYF-DEMLDHGLMPNNPLYTVLINGHFKAG 304

Query: 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS 296
              EA+  F  ++  G++PD  T SA +    K+G+V+E L ++      G  PD   +S
Sbjct: 305 NLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYS 364

Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356
            L   F + G+ +    +  EM   G+ PN+ +YN L++ + K+G    AR LFD M E 
Sbjct: 365 SLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEK 424

Query: 357 GLTPDEKTLTALIKIYGKARWAKDALELWERM-RENKWPMDFILYNTLLNMCADIGLVEE 415
           GL PD  T + +I  Y K+    +A  L+  M  +   P  F+ YN L++ C   G +E+
Sbjct: 425 GLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFV-YNALVHGCCKEGDMEK 483

Query: 416 AERLFEDM-------------KLSDYCK--------------------PDNYSYTAMLNI 442
           A  LF +M              +  YCK                    PD+ +YT +++ 
Sbjct: 484 AMNLFREMLQKGFATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDW 543

Query: 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           +   G ++ A  LF+EM E  +                   +D +  +F   + +GVKPD
Sbjct: 544 HCKAGKMEEANLLFKEMQERNLI------------------VDTVFALFEKMVAKGVKPD 585

Query: 503 D 503
           +
Sbjct: 586 E 586



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 134/284 (47%), Gaps = 2/284 (0%)

Query: 181 NLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDE 240
            L P   ++  + M     GR  +   +L + M  + +  D   Y+ II+C  +    +E
Sbjct: 180 GLKPNVVVYSTLIMGYASEGR-IEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEE 238

Query: 241 AIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGK 300
           A  +   +   GL PD VT+ A +  Y+K+GK+ E    ++  +  G  P+   ++VL  
Sbjct: 239 ASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLIN 298

Query: 301 MFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTP 360
              ++G+      + + + +LGV P++   +  +  + K G+   A  +F E+ E GL P
Sbjct: 299 GHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVP 358

Query: 361 DEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLF 420
           D  T ++LI  + K    + A EL + M       +  +YN L++     G ++ A +LF
Sbjct: 359 DVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLF 418

Query: 421 EDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
           + M      +PD+ +Y+ M++ Y    NV  A  LF EM   GV
Sbjct: 419 DGMPEKGL-EPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGV 461



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 152/329 (46%), Gaps = 2/329 (0%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
             + ++ +NL P   + Y   +  L   +   L  +L  +M  + ++ + + YST+I   
Sbjct: 137 LLDEMEKRNLVP-SAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGY 195

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
                 +EA    + M  +G+ PD   Y+AI+   +K+GK+EE  +        G KPD 
Sbjct: 196 ASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDA 255

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           + F      + ++G          EM   G+ PN  +Y  L+    KAG    A S+F  
Sbjct: 256 VTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRH 315

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           +   G+ PD +T +A I    K    ++AL+++  ++E     D   Y++L++     G 
Sbjct: 316 LHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGE 375

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
           VE+A  L ++M L     P+ + Y A+++     G++  A +LF+ M E G+  + +  +
Sbjct: 376 VEKAFELHDEMCLKGI-APNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYS 434

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
            +I    K+  + +   +F     +GV+P
Sbjct: 435 TMIDGYCKSENVAEAFSLFHEMPSKGVQP 463



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/258 (29%), Positives = 121/258 (46%), Gaps = 7/258 (2%)

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M + GL+P+  TY+ I     ++ ++ E    +E    +G KPD  A S L   F   GD
Sbjct: 1   MGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGD 60

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
            D +  +   M S G+  NL+ YN L+  + K GK   A  +   M+  G  P+ +T   
Sbjct: 61  IDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCL 120

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN---MCADIGLVEEAERLFEDMK 424
           LI+ Y +      ALEL + M +       + Y  ++N    C D+ L   A +L E M 
Sbjct: 121 LIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSL---ANKLLEKMT 177

Query: 425 LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484
            S   KP+   Y+ ++  Y S G ++ A  L + MS  GVA ++     +I CL KA ++
Sbjct: 178 FSGL-KPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKM 236

Query: 485 DDLVRVFGVSIDRGVKPD 502
           ++          RG+KPD
Sbjct: 237 EEASTYLLEIQGRGLKPD 254



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 89/356 (25%), Positives = 158/356 (44%), Gaps = 38/356 (10%)

Query: 183 FPMETIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEA 241
            P+  I YNV +  L +FG+  +  E L   M++   + ++ T+  +I    R +    A
Sbjct: 76  IPINLITYNVLIHGLCKFGKMEKAAEILKG-MITLGCKPNSRTFCLLIEGYCREHNMGRA 134

Query: 242 IEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKM 301
           +E  + M K  L+P  V+Y A+++       +     L E+   SG KP+ + +S L   
Sbjct: 135 LELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMG 194

Query: 302 FGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD 361
           +   G  +  R +L  M   GV P++  YN ++  + KAGK   A +   E+   GL PD
Sbjct: 195 YASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPD 254

Query: 362 EKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN---------------- 405
             T  A I  Y K     +A + ++ M ++    +  LY  L+N                
Sbjct: 255 AVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFR 314

Query: 406 ------------MCADI-------GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
                        C+         G V+EA ++F ++K      PD ++Y+++++ +   
Sbjct: 315 HLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLV-PDVFTYSSLISGFCKQ 373

Query: 447 GNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           G V+ A EL +EM   G+A N+     L+  L K+  I    ++F    ++G++PD
Sbjct: 374 GEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPD 429



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 137/295 (46%), Gaps = 1/295 (0%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           ++ + MVS  I ++ ITY+ +I    +    ++A E  + M   G  P+  T+  +++ Y
Sbjct: 66  RIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGY 125

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            +   +   L L +        P  +++  +        D      +L++M   G++PN+
Sbjct: 126 CREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNV 185

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
           VVY+TL+      G+   AR L D M  SG+ PD     A+I    KA   ++A      
Sbjct: 186 VVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLE 245

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           ++      D + +   +   +  G + EA + F++M L     P+N  YT ++N +   G
Sbjct: 246 IQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEM-LDHGLMPNNPLYTVLINGHFKAG 304

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           N+  A+ +F  +  LGV  +V  C+  I  L K  R+ + ++VF    ++G+ PD
Sbjct: 305 NLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPD 359



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 132/282 (46%), Gaps = 1/282 (0%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           TY+ I     R    +EA   FE M KTGL PD    SA++D + + G ++EVL + +  
Sbjct: 12  TYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVM 71

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
           V+ G   + I ++VL     + G  +    +L+ M +LG +PN   +  L+E   +    
Sbjct: 72  VSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNM 131

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
           G A  L DEM +  L P   +  A+I      +    A +L E+M  +    + ++Y+TL
Sbjct: 132 GRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTL 191

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           +   A  G +EEA RL + M  S    PD + Y A+++     G ++ A     E+   G
Sbjct: 192 IMGYASEGRIEEARRLLDGMSCSGV-APDIFCYNAIISCLSKAGKMEEASTYLLEIQGRG 250

Query: 464 VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRL 505
           +  + +     I    K  ++ +  + F   +D G+ P++ L
Sbjct: 251 LKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPL 292



 Score = 99.0 bits (245), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 159/357 (44%), Gaps = 30/357 (8%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           Q++   F+ +K + L P +   Y+  +       + +   +L +EM    I  +   Y+ 
Sbjct: 342 QEALKVFSELKEKGLVP-DVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNA 400

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           ++    +      A + F+ M + GL PD VTYS ++D Y KS  V E  SL+    + G
Sbjct: 401 LVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKG 460

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
            +P    ++ L     + GD +    + +EM   G    L  +NTL++   K+ K   A 
Sbjct: 461 VQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTL-SFNTLIDGYCKSCKIQEAS 519

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMD--FILYNTLLN 405
            LF EM+   + PD  T T +I  + KA   ++A  L++ M+E    +D  F L+  ++ 
Sbjct: 520 QLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVFALFEKMVA 579

Query: 406 MCADIGLVEEAERLFEDMKLSDYCKPDNY--SYTAMLNIYGSG----GNVDN-------- 451
                    + + +   + +  +CK DN   ++     + G G    G + +        
Sbjct: 580 KGV------KPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCK 633

Query: 452 ------AIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
                 A +L +EM ELG+  ++  C+ L++   +A ++D+  RVF      G+ PD
Sbjct: 634 REDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSLGLVPD 690



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 88/200 (44%), Gaps = 17/200 (8%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIIT--C------------- 231
           T+ +N  +       + Q   QL  EM++ +I  D++TY+T+I   C             
Sbjct: 499 TLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFK 558

Query: 232 --AKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWK 289
              +R  + D     FE+M   G+ PDEVTY  ++  + K   + E   L +  V  G  
Sbjct: 559 EMQERNLIVDTVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGML 618

Query: 290 PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSL 349
                  +L     +  D      +L EM  LG++P+L   +TL+ +  +AGK   A  +
Sbjct: 619 TKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRV 678

Query: 350 FDEMVESGLTPDEKTLTALI 369
           F+ +   GL PD  TL  L+
Sbjct: 679 FEGVKSLGLVPDTTTLIDLV 698


>gi|15218325|ref|NP_172461.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122215618|sp|Q3EDF8.1|PPR28_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09900
 gi|332190391|gb|AEE28512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 598

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 146/317 (46%), Gaps = 5/317 (1%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
           TI    T +    G   +L++++ +   + ++    +TY+ ++    +    DEAI++  
Sbjct: 243 TILIEATCRDSGVGHAMKLLDEMRDRGCTPDV----VTYNVLVNGICKEGRLDEAIKFLN 298

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
            M  +G  P+ +T++ IL     +G+  +   L    +  G+ P  + F++L       G
Sbjct: 299 DMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKG 358

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
                  +L++M   G QPN + YN LL    K  K   A    + MV  G  PD  T  
Sbjct: 359 LLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYN 418

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
            ++    K    +DA+E+  ++         I YNT+++  A  G   +A +L ++M+  
Sbjct: 419 TMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAK 478

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
           D  KPD  +Y++++      G VD AI+ F E   +G+  N +    ++  L K+R+ D 
Sbjct: 479 DL-KPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDR 537

Query: 487 LVRVFGVSIDRGVKPDD 503
            +      I+RG KP++
Sbjct: 538 AIDFLVFMINRGCKPNE 554



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 138/295 (46%), Gaps = 8/295 (2%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           F N + S    P   I +N+ ++S+    ++   E+L  +M+        +T++ +I   
Sbjct: 296 FLNDMPSSGCQP-NVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFL 354

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            R  L   AI+  E+M + G  P+ ++Y+ +L  + K  K++  +   ER V+ G  PD 
Sbjct: 355 CRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDI 414

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           + ++ +     + G  +    +L ++ S G  P L+ YNT+++ + KAGK G A  L DE
Sbjct: 415 VTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDE 474

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT-LLNMCADIG 411
           M    L PD  T ++L+    +     +A++ +          + + +N+ +L +C    
Sbjct: 475 MRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKS-- 532

Query: 412 LVEEAERL--FEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
              + +R   F    ++  CKP+  SYT ++      G    A+EL  E+   G+
Sbjct: 533 --RQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNELCNKGL 585



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 145/326 (44%), Gaps = 6/326 (1%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D I  +T+I    R     +A +  E +  +G +PD +TY+ ++  Y K+G++   LS+ 
Sbjct: 136 DIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVL 195

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
           +R   S   PD + ++ + +   +SG       VL  M      P+++ Y  L+EA  + 
Sbjct: 196 DRMSVS---PDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRD 252

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
              G A  L DEM + G TPD  T   L+    K     +A++    M  +    + I +
Sbjct: 253 SGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITH 312

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           N +L      G   +AE+L  DM    +  P   ++  ++N     G +  AI++ E+M 
Sbjct: 313 NIILRSMCSTGRWMDAEKLLADMLRKGF-SPSVVTFNILINFLCRKGLLGRAIDILEKMP 371

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSE 520
           + G   N +    L+    K +++D  +      + RG  PD      +L+ +      E
Sbjct: 372 QHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVE 431

Query: 521 DVGKVITCL--QQANPKLVAFLNLIE 544
           D  +++  L  +  +P L+ +  +I+
Sbjct: 432 DAVEILNQLSSKGCSPVLITYNTVID 457



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 134/289 (46%), Gaps = 4/289 (1%)

Query: 214 VSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKV 273
           V++   L+++  +  +    R    +E  ++ E M   G +PD +  + ++  + + GK 
Sbjct: 94  VNSSFALEDVESNNHLRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKT 153

Query: 274 EEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTL 333
            +   + E    SG  PD I ++V+   + ++G+ +    VL  M    V P++V YNT+
Sbjct: 154 RKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMS---VSPDVVTYNTI 210

Query: 334 LEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKW 393
           L ++  +GK   A  + D M++    PD  T T LI+   +      A++L + MR+   
Sbjct: 211 LRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGC 270

Query: 394 PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAI 453
             D + YN L+N     G ++EA +   DM  S  C+P+  ++  +L    S G   +A 
Sbjct: 271 TPDVVTYNVLVNGICKEGRLDEAIKFLNDMP-SSGCQPNVITHNIILRSMCSTGRWMDAE 329

Query: 454 ELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           +L  +M   G + +V+    LI  L +   +   + +       G +P+
Sbjct: 330 KLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPN 378


>gi|242043154|ref|XP_002459448.1| hypothetical protein SORBIDRAFT_02g004810 [Sorghum bicolor]
 gi|241922825|gb|EER95969.1| hypothetical protein SORBIDRAFT_02g004810 [Sorghum bicolor]
          Length = 316

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/302 (28%), Positives = 148/302 (49%), Gaps = 26/302 (8%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           +TYS +I C  +  L  EA E F  M ++G  P+  TY ++L  YA  G + ++ ++ + 
Sbjct: 11  VTYSMLINCLCKSGLRAEAREIFNSMIQSGQKPNAATYRSLLHGYATEGNLVDMNNVKDL 70

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
            V +G +PD   F++    + + G  D       +M+ LG  P++V Y T+++ + K G+
Sbjct: 71  MVQNGMRPDRHVFNIEIYAYCKCGRLDEASLTFNKMQQLGFMPDIVTYTTVIDGLCKIGR 130

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIK---IYGKARWAKDALELWERMRENKWPMDFIL 399
              A S F +M++ GL+P+  T T LI    +YGK  W K A EL+  M +   P +   
Sbjct: 131 LDDAMSRFCQMIDDGLSPNIITFTTLIHGFSMYGK--WEK-AEELFYEMMDRGIPPNVNT 187

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE- 458
           +N++++     G V EA +LF+ M  +   KP+  SY  M++ Y   G V   ++L ++ 
Sbjct: 188 FNSMIDRLFKEGKVTEARKLFDLMPRAG-AKPNVVSYNTMIHGYFIAGEVGEVMKLLDDM 246

Query: 459 ------------------MSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
                             M  +G+  NV  C  LI    +  RI+D++ +F   + +  K
Sbjct: 247 LLIGLKPNAVNLNTLLDGMLSIGLKPNVDTCKTLIDSCCEDDRIEDILTLFREMLSKADK 306

Query: 501 PD 502
            D
Sbjct: 307 TD 308



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 99/200 (49%)

Query: 213 MVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK 272
           MV N +  D   ++  I    +C   DEA   F +M + G MPD VTY+ ++D   K G+
Sbjct: 71  MVQNGMRPDRHVFNIEIYAYCKCGRLDEASLTFNKMQQLGFMPDIVTYTTVIDGLCKIGR 130

Query: 273 VEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNT 332
           +++ +S + + +  G  P+ I F+ L   F   G ++    +  EM   G+ PN+  +N+
Sbjct: 131 LDDAMSRFCQMIDDGLSPNIITFTTLIHGFSMYGKWEKAEELFYEMMDRGIPPNVNTFNS 190

Query: 333 LLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENK 392
           +++ + K GK   AR LFD M  +G  P+  +   +I  Y  A    + ++L + M    
Sbjct: 191 MIDRLFKEGKVTEARKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIG 250

Query: 393 WPMDFILYNTLLNMCADIGL 412
              + +  NTLL+    IGL
Sbjct: 251 LKPNAVNLNTLLDGMLSIGL 270



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 98/196 (50%), Gaps = 6/196 (3%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           FN ++     P + + Y   +  L + GR    + +   +M+ + +  + IT++T+I   
Sbjct: 103 FNKMQQLGFMP-DIVTYTTVIDGLCKIGRLDDAMSRFC-QMIDDGLSPNIITFTTLIHGF 160

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
                +++A E F  M   G+ P+  T+++++D   K GKV E   L++    +G KP+ 
Sbjct: 161 SMYGKWEKAEELFYEMMDRGIPPNVNTFNSMIDRLFKEGKVTEARKLFDLMPRAGAKPNV 220

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG-KPGL--ARSL 349
           ++++ +   +  +G+   +  +L +M  +G++PN V  NTLL+ M   G KP +   ++L
Sbjct: 221 VSYNTMIHGYFIAGEVGEVMKLLDDMLLIGLKPNAVNLNTLLDGMLSIGLKPNVDTCKTL 280

Query: 350 FDEMVESGLTPDEKTL 365
            D   E     D  TL
Sbjct: 281 IDSCCEDDRIEDILTL 296


>gi|255660856|gb|ACU25597.1| pentatricopeptide repeat-containing protein [Bouchea fluminensis]
          Length = 418

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 151/316 (47%), Gaps = 3/316 (0%)

Query: 148 IPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIE 207
           +P    R+  L  L  L++++  + F+  I     +P    F+N+ M       + +L +
Sbjct: 99  VPFDTCRK-VLEHLMKLRYFRLVWGFYKEILECG-YPPSLYFFNILMHRFCKEGEMRLAQ 156

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
            + + +    +    ++++T++    R    DE       M+ TG+ PD  TYS +++  
Sbjct: 157 MVFDAITKWSLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHATGVQPDVYTYSVLINGL 216

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            K  K++E   +    + +G  P+ + F+ L     ++G  D    + ++M S G  P+L
Sbjct: 217 CKESKMDEANEMLNEMLDNGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQGFLPDL 276

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
           + YNTL+  + + G  G AR L +EM+  GL PD+ T T LI    K    +   EL +R
Sbjct: 277 ITYNTLIYGLCRRGDLGQARDLVEEMIMKGLKPDKITYTTLIDGSCKEGDLEITFELRKR 336

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           M      +D + Y  L++     G   +AE++  +M L+   KPDN +YT ++N +   G
Sbjct: 337 MIRENIRLDEVTYTALISGLCREGRAGDAEKMLREM-LTVGLKPDNGTYTMIMNEFCKTG 395

Query: 448 NVDNAIELFEEMSELG 463
           +V  A +L  EM   G
Sbjct: 396 DVKTASKLLREMQRNG 411



 Score = 92.4 bits (228), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 126/260 (48%), Gaps = 1/260 (0%)

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
           +++ + + G  P    ++ ++  + K G++     +++       +P  ++F+ L   + 
Sbjct: 123 FYKEILECGYPPSLYFFNILMHRFCKEGEMRLAQMVFDAITKWSLRPSVVSFNTLMNGYI 182

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
             GD D    +   M + GVQP++  Y+ L+  + K  K   A  + +EM+++GL P+  
Sbjct: 183 RLGDLDEGFRLKSAMHATGVQPDVYTYSVLINGLCKESKMDEANEMLNEMLDNGLVPNGV 242

Query: 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
           T T LI  + K      A+E++++M    +  D I YNTL+      G + +A  L E+M
Sbjct: 243 TFTTLIDGHCKNGKVDLAMEIYKQMLSQGFLPDLITYNTLIYGLCRRGDLGQARDLVEEM 302

Query: 424 KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483
            +    KPD  +YT +++     G+++   EL + M    + ++ +  T LI  L +  R
Sbjct: 303 IMKGL-KPDKITYTTLIDGSCKEGDLEITFELRKRMIRENIRLDEVTYTALISGLCREGR 361

Query: 484 IDDLVRVFGVSIDRGVKPDD 503
             D  ++    +  G+KPD+
Sbjct: 362 AGDAEKMLREMLTVGLKPDN 381



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 73/159 (45%)

Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS 261
           +  L  ++  +M+S     D ITY+T+I    R     +A +  E M   GL PD++TY+
Sbjct: 256 KVDLAMEIYKQMLSQGFLPDLITYNTLIYGLCRRGDLGQARDLVEEMIMKGLKPDKITYT 315

Query: 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
            ++D   K G +E    L +R +    + D + ++ L       G       +L+EM ++
Sbjct: 316 TLIDGSCKEGDLEITFELRKRMIRENIRLDEVTYTALISGLCREGRAGDAEKMLREMLTV 375

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTP 360
           G++P+   Y  ++    K G    A  L  EM  +G  P
Sbjct: 376 GLKPDNGTYTMIMNEFCKTGDVKTASKLLREMQRNGPVP 414



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 72/155 (46%), Gaps = 1/155 (0%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           +  + SQ   P + I YN  +  L           L  EM+   ++ D ITY+T+I  + 
Sbjct: 264 YKQMLSQGFLP-DLITYNTLIYGLCRRGDLGQARDLVEEMIMKGLKPDKITYTTLIDGSC 322

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
           +    +   E  +RM +  +  DEVTY+A++    + G+  +   +    +  G KPD  
Sbjct: 323 KEGDLEITFELRKRMIRENIRLDEVTYTALISGLCREGRAGDAEKMLREMLTVGLKPDNG 382

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
            ++++   F ++GD      +L+EM+  G  P +V
Sbjct: 383 TYTMIMNEFCKTGDVKTASKLLREMQRNGPVPGVV 417



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 55/256 (21%), Positives = 99/256 (38%), Gaps = 50/256 (19%)

Query: 254 MPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG-WKPDPIAFSVLGKMFGESGDYDGIR 312
           + D   +S ++  Y +SG V + +  +        W P      VL  +         +R
Sbjct: 63  ISDLYVFSGLMLAYLESGFVRDAIQCFRLTKKHKIWVPFDTCRKVLEHLMK-------LR 115

Query: 313 YV------LQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
           Y        +E+   G  P+L  +N L+    K G+  LA+ +FD + +  L P      
Sbjct: 116 YFRLVWGFYKEILECGYPPSLYFFNILMHRFCKEGEMRLAQMVFDAITKWSLRPS----- 170

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
                                          + +NTL+N    +G ++E  RL   M  +
Sbjct: 171 ------------------------------VVSFNTLMNGYIRLGDLDEGFRLKSAMHAT 200

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
              +PD Y+Y+ ++N       +D A E+  EM + G+  N +  T LI    K  ++D 
Sbjct: 201 G-VQPDVYTYSVLINGLCKESKMDEANEMLNEMLDNGLVPNGVTFTTLIDGHCKNGKVDL 259

Query: 487 LVRVFGVSIDRGVKPD 502
            + ++   + +G  PD
Sbjct: 260 AMEIYKQMLSQGFLPD 275


>gi|357142282|ref|XP_003572519.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 706

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 95/357 (26%), Positives = 170/357 (47%), Gaps = 14/357 (3%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN  +K L   +Q+   E+L  EM  N+   D++T+  +I    +  L D A+   +RM 
Sbjct: 193 YNTLLKGLCSAKQWGDAEELVEEMTRNDSPPDDLTFGMLIHSFCQSGLVDRAMGILDRMS 252

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
           K G  P  + Y+ I+  +A+ G+V+E L L+        KPD  +++ + K    +  ++
Sbjct: 253 KCGCTPGAIVYNEIISCFAELGRVKEALHLFS---CMPCKPDIFSYNAVLKGLCRAERWE 309

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               ++ EM      P+ V +NT++  +   G    A  + D+M + G  PD  T +ALI
Sbjct: 310 DAGELITEMVRKDCSPDEVTFNTVISFLCHKGLVDCALEVVDQMPKYGRKPDNFTYSALI 369

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLL-NMCADIGLVEEAERLFEDMKLSDY 428
             + +    +DALEL   +R      + + Y ++L  +C D G  E+  +L  +M  +D 
Sbjct: 370 NAFSEQGCVEDALEL---LRSMPCSPNTVCYKSVLKGLCRD-GQWEDVGQLIGEMVRND- 424

Query: 429 CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLV 488
           C PD   +  +++     G VD  +E+ +E+   G + +V+  T L+    +  R+DD +
Sbjct: 425 CAPDEMVFGLIIDCLCQRGLVDCGLEVLQEVPNYGCSPDVVMYTSLLNGFAEYGRVDDSL 484

Query: 489 RVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCL--QQANPKLVAFLNLI 543
           ++F        KP+      +L  +   E  ED GK+I  +  Q+  P  + F  LI
Sbjct: 485 KLFK---SMTCKPNTVTYNYVLMGLCKVELWEDAGKLIDEMVGQECPPNEMTFSILI 538



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 139/280 (49%), Gaps = 7/280 (2%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN  +K L    +++   +L  EMV  +   D +T++T+I+      L D A+E  ++M 
Sbjct: 295 YNAVLKGLCRAERWEDAGELITEMVRKDCSPDEVTFNTVISFLCHKGLVDCALEVVDQMP 354

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
           K G  PD  TYSA+++ +++ G VE+ L L      S   P+ + +  + K     G ++
Sbjct: 355 KYGRKPDNFTYSALINAFSEQGCVEDALELLRSMPCS---PNTVCYKSVLKGLCRDGQWE 411

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
            +  ++ EM      P+ +V+  +++ + + G       +  E+   G +PD    T+L+
Sbjct: 412 DVGQLIGEMVRNDCAPDEMVFGLIIDCLCQRGLVDCGLEVLQEVPNYGCSPDVVMYTSLL 471

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
             + +     D+L+L++ M       + + YN +L     + L E+A +L ++M +   C
Sbjct: 472 NGFAEYGRVDDSLKLFKSMTCKP---NTVTYNYVLMGLCKVELWEDAGKLIDEM-VGQEC 527

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVM 469
            P+  +++ +++     G V+ AI++FE+M   G   NV+
Sbjct: 528 PPNEMTFSILISSLCQKGLVECAIDVFEKMQMYGCTPNVI 567



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 82/377 (21%), Positives = 156/377 (41%), Gaps = 54/377 (14%)

Query: 133 DCDNTEEAFLRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPME------ 186
           DC   E  F   I+ + H+   + AL +++ +  + +    F +    N F  +      
Sbjct: 322 DCSPDEVTFNTVISFLCHKGLVDCALEVVDQMPKYGRKPDNFTYSALINAFSEQGCVEDA 381

Query: 187 ------------TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKR 234
                       T+ Y   +K L    Q++ + QL  EMV N+   D + +  II C  +
Sbjct: 382 LELLRSMPCSPNTVCYKSVLKGLCRDGQWEDVGQLIGEMVRNDCAPDEMVFGLIIDCLCQ 441

Query: 235 CNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY-------------- 280
             L D  +E  + +   G  PD V Y+++L+ +A+ G+V++ L L+              
Sbjct: 442 RGLVDCGLEVLQEVPNYGCSPDVVMYTSLLNGFAEYGRVDDSLKLFKSMTCKPNTVTYNY 501

Query: 281 ------------------ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG 322
                             +  V     P+ + FS+L     + G  +    V ++M+  G
Sbjct: 502 VLMGLCKVELWEDAGKLIDEMVGQECPPNEMTFSILISSLCQKGLVECAIDVFEKMQMYG 561

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382
             PN+++Y+TL   + + G    A  L + M       D    ++ +K   +A   +DA 
Sbjct: 562 CTPNVIIYSTLNNGLSEKGCVDNALKLLNNM---SCKADTICYSSALKGLCRAELWEDAG 618

Query: 383 ELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNI 442
           EL   M     P D + ++ ++      G VE A  +  D+ L   C P+   Y++++N 
Sbjct: 619 ELIVEMFRKDCPPDEVTFSIIITNLCQQGFVEYATEV-SDLMLKYECTPNIVIYSSLING 677

Query: 443 YGSGGNVDNAIELFEEM 459
           +   G++++A++L   M
Sbjct: 678 FSEHGHLEDALKLLRSM 694



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 133/297 (44%), Gaps = 12/297 (4%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D +TY+T+I    R    ++A      M      P+   Y+ +L     + +  +   L 
Sbjct: 157 DVVTYNTLIAGYCRGGRLEDARLLVASMPPA---PNSYAYNTLLKGLCSAKQWGDAEELV 213

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
           E    +   PD + F +L   F +SG  D    +L  M   G  P  +VYN ++    + 
Sbjct: 214 EEMTRNDSPPDDLTFGMLIHSFCQSGLVDRAMGILDRMSKCGCTPGAIVYNEIISCFAEL 273

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G+   A  LF  M      PD  +  A++K   +A   +DA EL   M       D + +
Sbjct: 274 GRVKEALHLFSCM---PCKPDIFSYNAVLKGLCRAERWEDAGELITEMVRKDCSPDEVTF 330

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           NT+++     GLV+ A  + + M      KPDN++Y+A++N +   G V++A+EL   M 
Sbjct: 331 NTVISFLCHKGLVDCALEVVDQMPKYGR-KPDNFTYSALINAFSEQGCVEDALELLRSMP 389

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCE 517
               + N +    +++ L +  + +D+ ++ G  +     PD+ + G  L +  LC+
Sbjct: 390 ---CSPNTVCYKSVLKGLCRDGQWEDVGQLIGEMVRNDCAPDEMVFG--LIIDCLCQ 441



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 114/248 (45%), Gaps = 8/248 (3%)

Query: 256 DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVL 315
           D V ++ ++  Y ++G++ +   +  R +A+    D + ++ L   +   G  +  R ++
Sbjct: 123 DAVDHNTLVAGYCRAGRLADAERML-RSLAASGAADVVTYNTLIAGYCRGGRLEDARLLV 181

Query: 316 QEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA 375
             M      PN   YNTLL+ +  A + G A  L +EM  +   PD+ T   LI  + ++
Sbjct: 182 ASMPP---APNSYAYNTLLKGLCSAKQWGDAEELVEEMTRNDSPPDDLTFGMLIHSFCQS 238

Query: 376 RWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYS 435
                A+ + +RM +       I+YN +++  A++G V+EA  LF  M     CKPD +S
Sbjct: 239 GLVDRAMGILDRMSKCGCTPGAIVYNEIISCFAELGRVKEALHLFSCMP----CKPDIFS 294

Query: 436 YTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSI 495
           Y A+L         ++A EL  EM     + + +    +I  L     +D  + V     
Sbjct: 295 YNAVLKGLCRAERWEDAGELITEMVRKDCSPDEVTFNTVISFLCHKGLVDCALEVVDQMP 354

Query: 496 DRGVKPDD 503
             G KPD+
Sbjct: 355 KYGRKPDN 362


>gi|410110075|gb|AFV61117.1| pentatricopeptide repeat-containing protein 123, partial
           [Burroughsia fastigiata]
          Length = 348

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/345 (23%), Positives = 166/345 (48%), Gaps = 6/345 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +KS    P + + YN  +      + F+    L +EM +  +  +  +YS
Sbjct: 3   YSKAISIFSRLKSSGYXP-DLVAYNTMIIVFGKAKLFREARSLISEMKTAGVTPNTTSYS 61

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY + G  +E   L+      
Sbjct: 62  TLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 121

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   ++ N+V YN+++   GK  +   A
Sbjct: 122 GIEPNVVSYNTLVRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKA 181

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R +   +D IL+ T++  
Sbjct: 182 NNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGXEIDQILFQTMIVA 241

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K     +PDN      ++I    G ++ A  +F +  + G   
Sbjct: 242 YERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVK 296

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
           ++     +I  L K ++  ++V VF      G  PD  +   +L+
Sbjct: 297 DITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLN 341



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 102/206 (49%), Gaps = 1/206 (0%)

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
           DY     +   +KS G  P+LV YNT++   GKA     ARSL  EM  +G+TP+  + +
Sbjct: 2   DYSKAISIFSRLKSSGYXPDLVAYNTMIIVFGKAKLFREARSLISEMKTAGVTPNTTSYS 61

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
            L+ +Y + +   +AL ++  MRE K  +D    N ++++   +G+ +EA++LF  M+  
Sbjct: 62  TLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 121

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
              +P+  SY  ++ +YG       AI LF  M    +  NV+    +I   GK    + 
Sbjct: 122 G-IEPNVVSYNTLVRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEK 180

Query: 487 LVRVFGVSIDRGVKPDDRLCGCLLSV 512
              +      RG++P+      ++S+
Sbjct: 181 ANNLIQEMQSRGIEPNSITYSTIISI 206



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 75/166 (45%), Gaps = 4/166 (2%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  EM S  IE ++ITYSTII+   +    D A   F+++  +G   D++ +  ++  Y 
Sbjct: 184 LIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGXEIDQILFQTMIVAYE 243

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           ++G V       +R +    +PD I       +   +G  +   YV ++    G   ++ 
Sbjct: 244 RAGLVAHA----KRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDIT 299

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK 374
           V+  ++  + K  K      +FD+M   G  PD   +  ++  YGK
Sbjct: 300 VFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGK 345



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/153 (21%), Positives = 69/153 (45%), Gaps = 1/153 (0%)

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
           A+ ++ R++ + +  D + YNT++ +     L  EA  L  +MK +    P+  SY+ +L
Sbjct: 6   AISIFSRLKSSGYXPDLVAYNTMIIVFGKAKLFREARSLISEMKTAG-VTPNTTSYSTLL 64

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
            +Y        A+ +F EM E+   +++  C  +I   G+     +  ++F      G++
Sbjct: 65  TMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 124

Query: 501 PDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN 533
           P+      L+ V    E   +   +   +Q+ N
Sbjct: 125 PNVVSYNTLVRVYGDAELFGEAIHLFRLMQRKN 157


>gi|356575428|ref|XP_003555843.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g59040-like [Glycine max]
          Length = 562

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/357 (24%), Positives = 168/357 (47%), Gaps = 9/357 (2%)

Query: 158 LLILNSLKFWQKSYFFFNWIKSQNLFPMETI-FYNVTMKSLRFGRQFQLIEQLANEMVSN 216
           L+    LK W        W+++QN +    + F+ +     + G  F   E++   M  N
Sbjct: 107 LIRFKQLKKWNLVVEILEWLRTQNWWDFGKMDFFMLITAYGKLG-DFNGAEKVLGLMNKN 165

Query: 217 EIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV 276
               + ++ + ++    +   ++ A   F RM K G  P   TY  IL  + +  K  E 
Sbjct: 166 GYAPNVVSQTALMEAYGKGGRYNNAEAIFRRMQKWGPEPSAFTYQIILKTFVQGNKFREA 225

Query: 277 LSLYERGV---ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTL 333
             L++  +    S  KPD   F+++  M  ++G Y+  R    +M  LG+Q   V YN+L
Sbjct: 226 EELFDNLLNDENSPLKPDQKMFNMMIYMHKKAGSYEKARKTFAQMAELGIQQTTVTYNSL 285

Query: 334 LEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKW 393
           +       +     +++D+M  + L PD  +   L+  YGKAR  ++AL ++E M +   
Sbjct: 286 MSFETNYKE---VSNIYDQMQRADLRPDVVSYALLVSAYGKARREEEALAVFEEMLDAGI 342

Query: 394 PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAI 453
                 YN LL+  +  G+VE+A+ +F+ M+   Y  PD  SYT ML+ Y +  +++ A 
Sbjct: 343 RPTRKAYNILLDAFSISGMVEQAQTVFKSMRRDRYF-PDLCSYTTMLSAYINADDMEGAE 401

Query: 454 ELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
           + F+ + + G   NV+    LI+   K   ++ +++ +   + RG+K +  +   ++
Sbjct: 402 KFFKRLIQDGFEPNVVTYGTLIKGYAKINDLEMVMKKYEEMLMRGIKANQTILTTIM 458



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 132/283 (46%), Gaps = 11/283 (3%)

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
           W    + F +L   +G+ GD++G   VL  M   G  PN+V    L+EA GK G+   A 
Sbjct: 132 WDFGKMDFFMLITAYGKLGDFNGAEKVLGLMNKNGYAPNVVSQTALMEAYGKGGRYNNAE 191

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER-MRENKWPM--DFILYNTLL 404
           ++F  M + G  P   T   ++K + +    ++A EL++  + +   P+  D  ++N ++
Sbjct: 192 AIFRRMQKWGPEPSAFTYQIILKTFVQGNKFREAEELFDNLLNDENSPLKPDQKMFNMMI 251

Query: 405 NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
            M    G  E+A + F  M      +    +Y ++++   +   V N   ++++M    +
Sbjct: 252 YMHKKAGSYEKARKTFAQMAELG-IQQTTVTYNSLMSFETNYKEVSN---IYDQMQRADL 307

Query: 465 AINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGK 524
             +V+    L+   GKARR ++ + VF   +D G++P  +    LL   S+    E    
Sbjct: 308 RPDVVSYALLVSAYGKARREEEALAVFEEMLDAGIRPTRKAYNILLDAFSISGMVEQAQT 367

Query: 525 VITCLQQAN--PKLVAFLNLIED--NSTGFENIKEEFRNVIKD 563
           V   +++    P L ++  ++    N+   E  ++ F+ +I+D
Sbjct: 368 VFKSMRRDRYFPDLCSYTTMLSAYINADDMEGAEKFFKRLIQD 410



 Score = 89.4 bits (220), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 111/233 (47%), Gaps = 3/233 (1%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
           T+ YN  M    F   ++ +  + ++M   ++  D ++Y+ +++   +    +EA+  FE
Sbjct: 279 TVTYNSLMS---FETNYKEVSNIYDQMQRADLRPDVVSYALLVSAYGKARREEEALAVFE 335

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
            M   G+ P    Y+ +LD ++ SG VE+  ++++      + PD  +++ +   +  + 
Sbjct: 336 EMLDAGIRPTRKAYNILLDAFSISGMVEQAQTVFKSMRRDRYFPDLCSYTTMLSAYINAD 395

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
           D +G     + +   G +PN+V Y TL++   K     +    ++EM+  G+  ++  LT
Sbjct: 396 DMEGAEKFFKRLIQDGFEPNVVTYGTLIKGYAKINDLEMVMKKYEEMLMRGIKANQTILT 455

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
            ++  YGK+     A+  ++ M  N  P D    N LL++       EEA  L
Sbjct: 456 TIMDAYGKSGDFDSAVHWFKEMESNGIPPDQKAKNVLLSLAKTDEEREEANEL 508



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 78/346 (22%), Positives = 154/346 (44%), Gaps = 11/346 (3%)

Query: 136 NTEEAFLRAITEIPHQPTRENALLILNSL----KFWQKSYFFFNWIKSQN--LFPMETIF 189
           N  EA  R + +   +P+     +IL +     KF +    F N +  +N  L P + +F
Sbjct: 188 NNAEAIFRRMQKWGPEPSAFTYQIILKTFVQGNKFREAEELFDNLLNDENSPLKPDQKMF 247

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
            N+ +   +    ++   +   +M    I+   +TY+++++       + E    +++M 
Sbjct: 248 -NMMIYMHKKAGSYEKARKTFAQMAELGIQQTTVTYNSLMSFETN---YKEVSNIYDQMQ 303

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
           +  L PD V+Y+ ++  Y K+ + EE L+++E  + +G +P   A+++L   F  SG  +
Sbjct: 304 RADLRPDVVSYALLVSAYGKARREEEALAVFEEMLDAGIRPTRKAYNILLDAFSISGMVE 363

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
             + V + M+     P+L  Y T+L A   A     A   F  +++ G  P+  T   LI
Sbjct: 364 QAQTVFKSMRRDRYFPDLCSYTTMLSAYINADDMEGAEKFFKRLIQDGFEPNVVTYGTLI 423

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
           K Y K    +  ++ +E M       +  +  T+++     G  + A   F++M+ S+  
Sbjct: 424 KGYAKINDLEMVMKKYEEMLMRGIKANQTILTTIMDAYGKSGDFDSAVHWFKEME-SNGI 482

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLI 475
            PD  +   +L++  +    + A EL    SE      V G   L+
Sbjct: 483 PPDQKAKNVLLSLAKTDEEREEANELVVHFSENSSLPKVNGIVKLV 528


>gi|224130398|ref|XP_002320827.1| predicted protein [Populus trichocarpa]
 gi|222861600|gb|EEE99142.1| predicted protein [Populus trichocarpa]
          Length = 775

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 145/335 (43%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           Q+       ++SQ     +TI YN  +       + +  ++L +EM    +  + +T +T
Sbjct: 400 QEGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEIEKGKELFDEMNKEGVAPNVVTVNT 459

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           ++    R      A+ +F    + G+  D VTY+A+++ +      E+ + L+   + SG
Sbjct: 460 LVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTALINAFCNVNNFEKAMELFNEMLKSG 519

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
             PD I +  L   F ++G      +VL E+K LG++P+ V YNTL+    +  K     
Sbjct: 520 CSPDAIVYYTLISGFSQAGRMADASFVLAELKKLGIRPDTVCYNTLIGGFCRTNKFHRVF 579

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
            +  EM E+GL PD  T   LI    K    K A ++  +M +         Y  ++N  
Sbjct: 580 EMLKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQKVMRKMIKAGVVPTVATYGAVINAY 639

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
              G   EA  +F+DMK +    P+   Y  ++N       V +A+ L E+M   GV  N
Sbjct: 640 CLNGNGNEAMEIFKDMKAASKVPPNTVIYNILINSLCKNNKVKSAVSLMEDMKIWGVTPN 699

Query: 468 VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
                 + + L   + ++ +       I+    PD
Sbjct: 700 TTTYNAIFKGLRDEKDLEKVFEFMDRMIEHACNPD 734



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/340 (25%), Positives = 152/340 (44%), Gaps = 10/340 (2%)

Query: 185 METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEW 244
           +E+   N  +  L     F  + +L  +MV  +I+ + +T+  +I    +    D+A+E 
Sbjct: 303 LESAACNSLLTGLAREGNFNRMNELMEKMVEMDIQPNVVTFGILINHMCKFRRVDDALEV 362

Query: 245 FERM--------YKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS-GWKPDPIAF 295
            E+M            + PD V Y+ ++D   K G+ +E L L ER  +  G  PD I +
Sbjct: 363 LEKMSGGKESGGISVSVEPDVVIYNTLIDGLCKVGRQQEGLGLMERMRSQKGCAPDTITY 422

Query: 296 SVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVE 355
           + L   F ++G+ +  + +  EM   GV PN+V  NTL+  M + G+   A + F E   
Sbjct: 423 NCLIDGFCKAGEIEKGKELFDEMNKEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQR 482

Query: 356 SGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEE 415
            G+  D  T TALI  +      + A+EL+  M ++    D I+Y TL++  +  G + +
Sbjct: 483 RGMKGDAVTYTALINAFCNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMAD 542

Query: 416 AERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLI 475
           A  +  ++K     +PD   Y  ++  +          E+ +EM E G+  + +    LI
Sbjct: 543 ASFVLAELKKLGI-RPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLI 601

Query: 476 QCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSL 515
               K   +    +V    I  GV P     G +++   L
Sbjct: 602 AYASKNGDLKFAQKVMRKMIKAGVVPTVATYGAVINAYCL 641



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 89/410 (21%), Positives = 184/410 (44%), Gaps = 18/410 (4%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  EM+     L++   ++++T   R   F+   E  E+M +  + P+ VT+  +++   
Sbjct: 292 LFTEMIKLGAVLESAACNSLLTGLAREGNFNRMNELMEKMVEMDIQPNVVTFGILINHMC 351

Query: 269 KSGKVEEVLSLYER--------GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
           K  +V++ L + E+        G++   +PD + ++ L     + G       +++ M+S
Sbjct: 352 KFRRVDDALEVLEKMSGGKESGGISVSVEPDVVIYNTLIDGLCKVGRQQEGLGLMERMRS 411

Query: 321 L-GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAK 379
             G  P+ + YN L++   KAG+    + LFDEM + G+ P+  T+  L+    +     
Sbjct: 412 QKGCAPDTITYNCLIDGFCKAGEIEKGKELFDEMNKEGVAPNVVTVNTLVGGMCRTGRVS 471

Query: 380 DALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAM 439
            A+  +   +      D + Y  L+N   ++   E+A  LF +M L   C PD   Y  +
Sbjct: 472 SAVNFFVEAQRRGMKGDAVTYTALINAFCNVNNFEKAMELFNEM-LKSGCSPDAIVYYTL 530

Query: 440 LNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGV 499
           ++ +   G + +A  +  E+ +LG+  + +    LI    +  +   +  +     + G+
Sbjct: 531 ISGFSQAGRMADASFVLAELKKLGIRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGL 590

Query: 500 KPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAFLNLIED---NSTGFENIK 554
           KPD      L++  S     +   KV+  + +A   P +  +  +I     N  G E + 
Sbjct: 591 KPDTITYNTLIAYASKNGDLKFAQKVMRKMIKAGVVPTVATYGAVINAYCLNGNGNEAM- 649

Query: 555 EEFRNVIKDTEVDARRPFCNCLID-ICRNRNLNERAHELLYLGTLYGLYP 603
           E F+++   ++V       N LI+ +C+N  + + A  L+    ++G+ P
Sbjct: 650 EIFKDMKAASKVPPNTVIYNILINSLCKNNKV-KSAVSLMEDMKIWGVTP 698



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 119/261 (45%), Gaps = 2/261 (0%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           ++K+   FN +      P   ++Y +     + GR       LA E+    I  D + Y+
Sbjct: 505 FEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLA-ELKKLGIRPDTVCYN 563

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T+I    R N F    E  + M + GL PD +TY+ ++   +K+G ++    +  + + +
Sbjct: 564 TLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQKVMRKMIKA 623

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG-VQPNLVVYNTLLEAMGKAGKPGL 345
           G  P    +  +   +  +G+ +    + ++MK+   V PN V+YN L+ ++ K  K   
Sbjct: 624 GVVPTVATYGAVINAYCLNGNGNEAMEIFKDMKAASKVPPNTVIYNILINSLCKNNKVKS 683

Query: 346 ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405
           A SL ++M   G+TP+  T  A+ K     +  +   E  +RM E+    D+I    L  
Sbjct: 684 AVSLMEDMKIWGVTPNTTTYNAIFKGLRDEKDLEKVFEFMDRMIEHACNPDYITMEILTE 743

Query: 406 MCADIGLVEEAERLFEDMKLS 426
             + +G +E  ++     ++S
Sbjct: 744 WLSAVGEIERLKKFVAGCEVS 764


>gi|449465535|ref|XP_004150483.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial-like [Cucumis sativus]
          Length = 542

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 104/431 (24%), Positives = 188/431 (43%), Gaps = 52/431 (12%)

Query: 122 RDLKLFARKLNDCD---NTEEAFLRAITEIPHQ---------PTRENALLILNSLKFWQK 169
           +DLK   + + + D      E F + I++ P+          P   +  LI+  LK    
Sbjct: 75  QDLKASQKSIVESDEIAQDAEKFCKLISKNPNSCIESLLDGAPMELSPALIVEVLKKLSN 134

Query: 170 SYF----FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITY 225
           + F    FF W + Q  F   T  YN+ +++L   +QF +I  L ++M    I L   T+
Sbjct: 135 AGFLALSFFRWAEKQKGFKHTTESYNLLIEALGKIKQFNVIWNLVSDMKRKGI-LSRETF 193

Query: 226 STIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVA 285
           + I     R     EA+E FE+M K G       ++ +LD   KS  V++   ++++   
Sbjct: 194 ALITRRYARARKVKEAVESFEKMEKFGFQMGVSDFNRLLDTLCKSRNVKKAQEVFDKMKH 253

Query: 286 SGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGL 345
             +KPD  ++++L + +G+  +   +  V +EM+  G +P++V +  L+ A  KA K   
Sbjct: 254 GRFKPDIKSYTILLEGWGQDQNLLKLNEVYREMRDEGFEPDVVTFGILINAHCKARKYDE 313

Query: 346 ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL-- 403
           A  LF EM    + P       LI   G  +  K+ALE +E+++ + +  +   YN +  
Sbjct: 314 AIRLFHEMEAKNIKPSPHVFCTLINGLGSEKRLKEALEFFEQLKLSGFAPEAPTYNAVVG 373

Query: 404 -----LNMCADIGLVE----------------------------EAERLFEDMKLSDYCK 430
                + M     +V+                            EA  +F+ M     C+
Sbjct: 374 AYCWSMKMAYAYRMVDEMRKSGVGPNSRTYDIILHHLIKGRKSKEAYSVFQRMSREPGCE 433

Query: 431 PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRV 490
           P   +Y  M+ ++ +   VD AI++++EM   GV   +   + LI  L    +++D    
Sbjct: 434 PTLSTYDIMIRMFCNEERVDMAIQIWDEMKAKGVLPGMHLFSTLINSLCHEHKLEDACTY 493

Query: 491 FGVSIDRGVKP 501
           F   +D G++P
Sbjct: 494 FQEMLDVGIRP 504



 Score = 45.4 bits (106), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 82/188 (43%), Gaps = 4/188 (2%)

Query: 161 LNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIEL 220
           L S K  +++  FF  +K     P E   YN  + +  +  +     ++ +EM  + +  
Sbjct: 340 LGSEKRLKEALEFFEQLKLSGFAP-EAPTYNAVVGAYCWSMKMAYAYRMVDEMRKSGVGP 398

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKT-GLMPDEVTYSAILDVYAKSGKVEEVLSL 279
           ++ TY  I+    +     EA   F+RM +  G  P   TY  ++ ++    +V+  + +
Sbjct: 399 NSRTYDIILHHLIKGRKSKEAYSVFQRMSREPGCEPTLSTYDIMIRMFCNEERVDMAIQI 458

Query: 280 YERGVASGWKPDPIAFSVL-GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMG 338
           ++   A G  P    FS L   +  E    D   Y  QEM  +G++P   +++ L +A+ 
Sbjct: 459 WDEMKAKGVLPGMHLFSTLINSLCHEHKLEDACTY-FQEMLDVGIRPPATMFSNLKQALL 517

Query: 339 KAGKPGLA 346
             G+   A
Sbjct: 518 DDGRKDTA 525


>gi|449503427|ref|XP_004161997.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g71060, mitochondrial-like [Cucumis sativus]
          Length = 542

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 104/431 (24%), Positives = 188/431 (43%), Gaps = 52/431 (12%)

Query: 122 RDLKLFARKLNDCD---NTEEAFLRAITEIPHQ---------PTRENALLILNSLKFWQK 169
           +DLK   + + + D      E F + I++ P+          P   +  LI+  LK    
Sbjct: 75  QDLKASQKSIVESDEIAQDAEKFCKLISKNPNSCIESLLDGAPMELSPALIVEVLKKLSN 134

Query: 170 SYF----FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITY 225
           + F    FF W + Q  F   T  YN+ +++L   +QF +I  L ++M    I L   T+
Sbjct: 135 AGFLALSFFRWAEKQKGFKHTTESYNLLIEALGKIKQFNVIWNLVSDMKRKGI-LSRETF 193

Query: 226 STIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVA 285
           + I     R     EA+E FE+M K G       ++ +LD   KS  V++   ++++   
Sbjct: 194 ALITRRYARARKVKEAVESFEKMEKFGFQMGVSDFNRLLDTLCKSRNVKKAQEVFDKMKH 253

Query: 286 SGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGL 345
             +KPD  ++++L + +G+  +   +  V +EM+  G +P++V +  L+ A  KA K   
Sbjct: 254 GRFKPDIKSYTILLEGWGQDQNLLKLNEVYREMRDEGFEPDVVTFGILINAHCKARKYDE 313

Query: 346 ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL-- 403
           A  LF EM    + P       LI   G  +  K+ALE +E+++ + +  +   YN +  
Sbjct: 314 AIRLFHEMEAKNIKPSPHVFCTLINGLGSEKRLKEALEFFEQLKLSGFAPEAPTYNAVVG 373

Query: 404 -----LNMCADIGLVE----------------------------EAERLFEDMKLSDYCK 430
                + M     +V+                            EA  +F+ M     C+
Sbjct: 374 AYCWSMKMAYAYRMVDEMRKSGVGPNSRTYDIILHHLIKGRKSKEAYSVFQRMSREPGCE 433

Query: 431 PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRV 490
           P   +Y  M+ ++ +   VD AI++++EM   GV   +   + LI  L    +++D    
Sbjct: 434 PTLSTYDIMIRMFCNEERVDMAIQIWDEMKAKGVLPGMHLFSTLINSLCHEHKLEDACTY 493

Query: 491 FGVSIDRGVKP 501
           F   +D G++P
Sbjct: 494 FQEMLDVGIRP 504



 Score = 45.4 bits (106), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 82/188 (43%), Gaps = 4/188 (2%)

Query: 161 LNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIEL 220
           L S K  +++  FF  +K     P E   YN  + +  +  +     ++ +EM  + +  
Sbjct: 340 LGSEKRLKEALEFFEQLKLSGFAP-EAPTYNAVVGAYCWSMKMAYAYRMVDEMRKSGVGP 398

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKT-GLMPDEVTYSAILDVYAKSGKVEEVLSL 279
           ++ TY  I+    +     EA   F+RM +  G  P   TY  ++ ++    +V+  + +
Sbjct: 399 NSRTYDIILHHLIKGRKSKEAYSVFQRMSREPGCEPTLSTYDIMIRMFCNEERVDMAIQI 458

Query: 280 YERGVASGWKPDPIAFSVL-GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMG 338
           ++   A G  P    FS L   +  E    D   Y  QEM  +G++P   +++ L +A+ 
Sbjct: 459 WDEMKAKGVLPGMHLFSTLINSLCHEHKLEDACTY-FQEMLDVGIRPPATMFSNLKQALL 517

Query: 339 KAGKPGLA 346
             G+   A
Sbjct: 518 DDGRKDTA 525


>gi|302780493|ref|XP_002972021.1| hypothetical protein SELMODRAFT_412471 [Selaginella moellendorffii]
 gi|300160320|gb|EFJ26938.1| hypothetical protein SELMODRAFT_412471 [Selaginella moellendorffii]
          Length = 2052

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 153/332 (46%), Gaps = 6/332 (1%)

Query: 160  ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ-LANEMVSNEI 218
            +LN  +  + +  FF W   ++ +      +N  ++ L   RQ++   Q L  E   +  
Sbjct: 1634 VLNHARDVEPTIQFFEWCHGRHGYTHTAFAFNRLLEFLVNKRQYKRAHQMLIAESKPSSF 1693

Query: 219  ELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS 278
            + +  TYSTI+          +A+   E M K  +  +   Y+ IL    K GK +E L 
Sbjct: 1694 QANAFTYSTIVRGYCEDGETRQALALLEHMKKAEVPANAKLYNIILTHLCKHGKEKEALD 1753

Query: 279  LYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMG 338
            L      +   PD   +++L     + G  +  + +++ M++     ++V YNTL+  + 
Sbjct: 1754 LLHSMATTSCAPDIYTYNILINALCKVGRLEDAQGLVEMMQARECPTDIVTYNTLIHGLC 1813

Query: 339  KAGKPGL----ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWP 394
            + G        A  LF+EMV+ G TP   T T +I    + +  + A ++ + M EN   
Sbjct: 1814 RKGNGRFRVERAFRLFEEMVDKGHTPTSVTYTVVIDALLRVKMDEQAQKVLDLMHENGCA 1873

Query: 395  MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIE 454
             D + YN L+N  A  G++++A  LF +M  +  C PD  +Y ++++ +   G V+ A +
Sbjct: 1874 FDLVTYNMLINRFAKAGMMDKAMDLFVEMP-TRGCIPDVVTYNSIVDGFCKAGKVEEANK 1932

Query: 455  LFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
            LF EM   G+  N    T +     KA R+ D
Sbjct: 1933 LFAEMKARGIFPNGRTYTSITDACLKAGRMQD 1964



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 61/258 (23%), Positives = 119/258 (46%), Gaps = 13/258 (5%)

Query: 184  PMETIFYNVTMKSL--------RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRC 235
            P + + YN  +  L        R  R F+L E    EMV       ++TY+ +I    R 
Sbjct: 1799 PTDIVTYNTLIHGLCRKGNGRFRVERAFRLFE----EMVDKGHTPTSVTYTVVIDALLRV 1854

Query: 236  NLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAF 295
             + ++A +  + M++ G   D VTY+ +++ +AK+G +++ + L+      G  PD + +
Sbjct: 1855 KMDEQAQKVLDLMHENGCAFDLVTYNMLINRFAKAGMMDKAMDLFVEMPTRGCIPDVVTY 1914

Query: 296  SVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVE 355
            + +   F ++G  +    +  EMK+ G+ PN   Y ++ +A  KAG+   A +   EM +
Sbjct: 1915 NSIVDGFCKAGKVEEANKLFAEMKARGIFPNGRTYTSITDACLKAGRMQDAHAYLVEMRK 1974

Query: 356  SGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEE 415
             GL  D  +  ALI    K    K   +L   M E  +  + + +N +    +     ++
Sbjct: 1975 EGLV-DAISYVALISTICKLGKGKLGFQLLREMLEKGFKPNLVTFNVVFEALSKESNTDD 2033

Query: 416  AERLFEDMKLSDYCKPDN 433
            A+ + ++++      P N
Sbjct: 2034 AKIMIQELRQQHSSPPLN 2051



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 107/257 (41%), Gaps = 38/257 (14%)

Query: 286  SGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGL 345
            S ++ +   +S + + + E G+      +L+ MK   V  N  +YN +L  + K GK   
Sbjct: 1691 SSFQANAFTYSTIVRGYCEDGETRQALALLEHMKKAEVPANAKLYNIILTHLCKHGKEKE 1750

Query: 346  ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405
            A  L   M  +   PD  T   LI    K    +DA  L E M+  + P D + YNTL++
Sbjct: 1751 ALDLLHSMATTSCAPDIYTYNILINALCKVGRLEDAQGLVEMMQARECPTDIVTYNTLIH 1810

Query: 406  MCADIG----LVEEAERLFEDM-----------------------------KLSDY---- 428
                 G     VE A RLFE+M                             K+ D     
Sbjct: 1811 GLCRKGNGRFRVERAFRLFEEMVDKGHTPTSVTYTVVIDALLRVKMDEQAQKVLDLMHEN 1870

Query: 429  -CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
             C  D  +Y  ++N +   G +D A++LF EM   G   +V+    ++    KA ++++ 
Sbjct: 1871 GCAFDLVTYNMLINRFAKAGMMDKAMDLFVEMPTRGCIPDVVTYNSIVDGFCKAGKVEEA 1930

Query: 488  VRVFGVSIDRGVKPDDR 504
             ++F     RG+ P+ R
Sbjct: 1931 NKLFAEMKARGIFPNGR 1947



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 107/247 (43%), Gaps = 15/247 (6%)

Query: 263  ILDVYAKSGKVEEVLSLYE--RGVASGWKPDPIAFSVLGKMFGESGDYD-GIRYVLQEMK 319
            ++DV   +  VE  +  +E   G   G+     AF+ L +       Y    + ++ E K
Sbjct: 1631 VVDVLNHARDVEPTIQFFEWCHG-RHGYTHTAFAFNRLLEFLVNKRQYKRAHQMLIAESK 1689

Query: 320  SLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAK 379
                Q N   Y+T++    + G+   A +L + M ++ +  + K    ++    K    K
Sbjct: 1690 PSSFQANAFTYSTIVRGYCEDGETRQALALLEHMKKAEVPANAKLYNIILTHLCKHGKEK 1749

Query: 380  DALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAM 439
            +AL+L   M       D   YN L+N    +G +E+A+ L E M+  + C  D  +Y  +
Sbjct: 1750 EALDLLHSMATTSCAPDIYTYNILINALCKVGRLEDAQGLVEMMQARE-CPTDIVTYNTL 1808

Query: 440  LNIYGSGGN----VDNAIELFEEMSELGVAINVMGCTCLIQCL------GKARRIDDLVR 489
            ++     GN    V+ A  LFEEM + G     +  T +I  L       +A+++ DL+ 
Sbjct: 1809 IHGLCRKGNGRFRVERAFRLFEEMVDKGHTPTSVTYTVVIDALLRVKMDEQAQKVLDLMH 1868

Query: 490  VFGVSID 496
              G + D
Sbjct: 1869 ENGCAFD 1875


>gi|125542535|gb|EAY88674.1| hypothetical protein OsI_10149 [Oryza sativa Indica Group]
          Length = 333

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/280 (28%), Positives = 139/280 (49%), Gaps = 1/280 (0%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + YN  +  L   R+    E L NEM    +  D  T++T+I         D+A++ F
Sbjct: 50  DVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLF 109

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           + M    L PD VTY+ ++D   + G +++   L++   +    P+ + +S+L     E 
Sbjct: 110 DTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEK 169

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G  +     L EM + G+ PN++ YN++++   ++G     +    +M+ + ++PD  T 
Sbjct: 170 GQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITY 229

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
             LI  Y K     DA +L   M + K   D + YN L+N  +  G V+EA  +FE M  
Sbjct: 230 NTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKM-C 288

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
           +   +PD Y+Y +M+N + + GN   A +L +EM + G A
Sbjct: 289 AKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGFA 328



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 142/300 (47%), Gaps = 5/300 (1%)

Query: 208 QLANEMVSNEIELDNITYSTIIT--CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
           ++ +EMV      D +TY+T++   C +R  L  E +     M + G+ PD  T++ ++ 
Sbjct: 37  RVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGL--LNEMRERGVPPDLCTFTTLIH 94

Query: 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325
            Y   GK+++ L L++  +    +PD + ++ L       GD D    +  +M S  + P
Sbjct: 95  GYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFP 154

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
           N V Y+ L+++  + G+   A    DEM+  G+ P+  T  ++IK Y ++       +  
Sbjct: 155 NHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFL 214

Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445
           ++M  NK   D I YNTL++       + +A +L   M+  +  +PD  +Y  ++N +  
Sbjct: 215 QKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMME-KEKVQPDVVTYNMLINGFSV 273

Query: 446 GGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRL 505
            GNV  A  +FE+M   G+  +      +I     A    +  ++    + RG  PDD+ 
Sbjct: 274 HGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGFAPDDKF 333



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 73/319 (22%), Positives = 142/319 (44%), Gaps = 4/319 (1%)

Query: 242 IEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKM 301
           + +   M   GL+PD V Y+ ++  + ++G + + L + +  V  G  PD + ++ L   
Sbjct: 1   MAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNG 60

Query: 302 FGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD 361
             +         +L EM+  GV P+L  + TL+      GK   A  LFD M+   L PD
Sbjct: 61  LCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPD 120

Query: 362 EKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFE 421
             T   LI    +      A +LW+ M   +   + + Y+ L++   + G VE+A    +
Sbjct: 121 IVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLD 180

Query: 422 DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
           +M ++    P+  +Y +++  Y   GNV    +  ++M    V+ +++    LI    K 
Sbjct: 181 EM-INKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKE 239

Query: 482 RRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI--TCLQQANPKLVAF 539
            ++ D  ++  +     V+PD      L++  S+    ++ G +    C +   P    +
Sbjct: 240 DKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTY 299

Query: 540 LNLIEDNSTGFENIKEEFR 558
           +++I  + T   N KE F+
Sbjct: 300 MSMINGHVTA-GNSKEAFQ 317



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 108/228 (47%), Gaps = 1/228 (0%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           K+   F+ + +Q L P + + YN  +  +           L ++M S EI  +++TYS +
Sbjct: 104 KALQLFDTMLNQRLRP-DIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSIL 162

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
           I         ++A  + + M   G++P+ +TY++I+  Y +SG V +     ++ + +  
Sbjct: 163 IDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKV 222

Query: 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348
            PD I ++ L   + +         +L  M+   VQP++V YN L+      G    A  
Sbjct: 223 SPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGW 282

Query: 349 LFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMD 396
           +F++M   G+ PD  T  ++I  +  A  +K+A +L + M +  +  D
Sbjct: 283 IFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGFAPD 330


>gi|326508346|dbj|BAJ99440.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 819

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 102/450 (22%), Positives = 192/450 (42%), Gaps = 75/450 (16%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIEL--DNI 223
           + K+  +F  +K  N+ P +T   N+ +  L + G+    ++ L N M    ++   D +
Sbjct: 274 YTKATGYFEMMKGANIAP-DTFTLNIVIHCLVKVGQHGDAVD-LLNSMREKRVQCSPDVV 331

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           TY++II     C   +     F+ M   G+ P+ V+Y+A+L  YA  G   E   +++  
Sbjct: 332 TYTSIIHSYYVCGQVENCKAVFDMMVAEGVKPNIVSYNALLGAYASHGMHTEAFGIFKLL 391

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
             +G +PD ++++ L   +G S   +  R V  EM+    +PN V YN L++A G AG  
Sbjct: 392 KQNGLRPDVVSYTTLLNAYGRSAQPEKAREVFNEMRKNSCKPNKVSYNALIDAYGSAGMF 451

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWA------------------------- 378
             A SL  EM + G+ PD  +++ L+   G+ R                           
Sbjct: 452 KEAISLLHEMEKDGIPPDVVSISTLLAACGRCRQTTKIDTVLEAAKFRGIELNIVAYNSG 511

Query: 379 ----------KDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM----- 423
                     + AL+L+  M  +    D + YN L++    +G   E+ + FEDM     
Sbjct: 512 IGSYLSFGDYEKALKLYATMMASNVNPDAVTYNILISGLCKLGKYAESLKFFEDMVDLRI 571

Query: 424 ------------------KLSDY-----------CKPDNYSYTAMLNIYGSGGNVDNAIE 454
                             KL++            C PD  +YTAM+  Y   G+  +  +
Sbjct: 572 PLTKEVYSSLICSYVKQDKLAEAESTFINMKASGCFPDVLTYTAMIQAYTDHGSWTSVWD 631

Query: 455 LFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVS 514
           LF+EM    +  + + C+ L++ L K  +   ++++     D+ ++ + +    +++  S
Sbjct: 632 LFKEMEGNAILPDAIICSSLMEALNKGNQYGRVLQLMKFMHDQCIQLNQKAYFEIIASCS 691

Query: 515 LCETSEDVGKVITCLQQANPKL-VAFLNLI 543
           +    +   ++I  L  + P + V  LN +
Sbjct: 692 MLRDWKTASEIIEHLDSSLPSISVGKLNYL 721



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/388 (21%), Positives = 162/388 (41%), Gaps = 41/388 (10%)

Query: 153 TRENALLILNSLKF---WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQL 209
            R N  L++  + F    + + + F W+K+Q  +      Y + ++      Q      L
Sbjct: 116 ARRNFPLLIREMAFSGSLEHAVYVFCWMKNQENYCARNDIYGMMIQLHARHNQVDQARGL 175

Query: 210 ANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAK 269
             EM     + D   Y+++I    R  L+  AI   + M +  + P   TY+ +++    
Sbjct: 176 FFEMQEWRCKPDADIYNSLINAHARAGLWRWAINIMDDMLRAAIPPSRATYNNVVNACGA 235

Query: 270 SGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVV 329
           +G  ++ L L ++ + +G  PD +  +++   F     Y       + MK   + P+   
Sbjct: 236 AGNWKKALELCKKMIRNGVGPDLVTHNIVLSAFKNGFQYTKATGYFEMMKGANIAPDTFT 295

Query: 330 YNTLLEAMGKAGKPGLA-------------------------------------RSLFDE 352
            N ++  + K G+ G A                                     +++FD 
Sbjct: 296 LNIVIHCLVKVGQHGDAVDLLNSMREKRVQCSPDVVTYTSIIHSYYVCGQVENCKAVFDM 355

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           MV  G+ P+  +  AL+  Y       +A  +++ +++N    D + Y TLLN       
Sbjct: 356 MVAEGVKPNIVSYNALLGAYASHGMHTEAFGIFKLLKQNGLRPDVVSYTTLLNAYGRSAQ 415

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
            E+A  +F +M+  + CKP+  SY A+++ YGS G    AI L  EM + G+  +V+  +
Sbjct: 416 PEKAREVFNEMR-KNSCKPNKVSYNALIDAYGSAGMFKEAISLLHEMEKDGIPPDVVSIS 474

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVK 500
            L+   G+ R+   +  V   +  RG++
Sbjct: 475 TLLAACGRCRQTTKIDTVLEAAKFRGIE 502



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 67/282 (23%), Positives = 128/282 (45%), Gaps = 5/282 (1%)

Query: 185 METIFYNVTMKS-LRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           +  + YN  + S L FG   + ++  A  M SN +  D +TY+ +I+   +   + E+++
Sbjct: 503 LNIVAYNSGIGSYLSFGDYEKALKLYATMMASN-VNPDAVTYNILISGLCKLGKYAESLK 561

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
           +FE M    +   +  YS+++  Y K  K+ E  S +    ASG  PD + ++ + + + 
Sbjct: 562 FFEDMVDLRIPLTKEVYSSLICSYVKQDKLAEAESTFINMKASGCFPDVLTYTAMIQAYT 621

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
           + G +  +  + +EM+   + P+ ++ ++L+EA+ K  + G    L   M +  +  ++K
Sbjct: 622 DHGSWTSVWDLFKEMEGNAILPDAIICSSLMEALNKGNQYGRVLQLMKFMHDQCIQLNQK 681

Query: 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
               +I      R  K A E+ E +  +   +     N LLN     G  E   +LF  M
Sbjct: 682 AYFEIIASCSMLRDWKTASEIIEHLDSSLPSISVGKLNYLLNFLGKCGKTESMMKLFYKM 741

Query: 424 KLSDYCKPDNYS-YTAMLNIYGSGGNVDNAIELFEEMSELGV 464
             S  C     S Y  +L    + G     +E+ + M + GV
Sbjct: 742 VSS--CSTVGLSTYKVLLRNLLAVGKWRKYVEVLQWMEDAGV 781



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 84/374 (22%), Positives = 150/374 (40%), Gaps = 42/374 (11%)

Query: 156 NALL-ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMV 214
           NALL    S     +++  F  +K   L P + + Y   + +     Q +   ++ NEM 
Sbjct: 369 NALLGAYASHGMHTEAFGIFKLLKQNGLRP-DVVSYTTLLNAYGRSAQPEKAREVFNEMR 427

Query: 215 SNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV-------- 266
            N  + + ++Y+ +I       +F EAI     M K G+ PD V+ S +L          
Sbjct: 428 KNSCKPNKVSYNALIDAYGSAGMFKEAISLLHEMEKDGIPPDVVSISTLLAACGRCRQTT 487

Query: 267 ---------------------------YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
                                      Y   G  E+ L LY   +AS   PD + +++L 
Sbjct: 488 KIDTVLEAAKFRGIELNIVAYNSGIGSYLSFGDYEKALKLYATMMASNVNPDAVTYNILI 547

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
               + G Y       ++M  L +     VY++L+ +  K  K   A S F  M  SG  
Sbjct: 548 SGLCKLGKYAESLKFFEDMVDLRIPLTKEVYSSLICSYVKQDKLAEAESTFINMKASGCF 607

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
           PD  T TA+I+ Y          +L++ M  N    D I+ ++L+     +    +  R+
Sbjct: 608 PDVLTYTAMIQAYTDHGSWTSVWDLFKEMEGNAILPDAIICSSLMEA---LNKGNQYGRV 664

Query: 420 FEDMK-LSDYC-KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
            + MK + D C + +  +Y  ++       +   A E+ E +     +I+V     L+  
Sbjct: 665 LQLMKFMHDQCIQLNQKAYFEIIASCSMLRDWKTASEIIEHLDSSLPSISVGKLNYLLNF 724

Query: 478 LGKARRIDDLVRVF 491
           LGK  + + ++++F
Sbjct: 725 LGKCGKTESMMKLF 738



 Score = 45.4 bits (106), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 70/168 (41%), Gaps = 1/168 (0%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           W   +  F  ++   + P + I  +  M++L  G Q+  + QL   M    I+L+   Y 
Sbjct: 626 WTSVWDLFKEMEGNAILP-DAIICSSLMEALNKGNQYGRVLQLMKFMHDQCIQLNQKAYF 684

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
            II        +  A E  E +  +         + +L+   K GK E ++ L+ + V+S
Sbjct: 685 EIIASCSMLRDWKTASEIIEHLDSSLPSISVGKLNYLLNFLGKCGKTESMMKLFYKMVSS 744

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLL 334
                   + VL +     G +     VLQ M+  GV+P L +Y  +L
Sbjct: 745 CSTVGLSTYKVLLRNLLAVGKWRKYVEVLQWMEDAGVRPTLYMYQNVL 792


>gi|357167837|ref|XP_003581356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Brachypodium distachyon]
          Length = 524

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 96/373 (25%), Positives = 181/373 (48%), Gaps = 23/373 (6%)

Query: 183 FPMETIFYNVTMKSL----RFGRQFQLIEQLANEMVSNEIELDNITYSTIIT--CAKRCN 236
            P+ T  +N+ ++ L    +  R  +L+ Q+ +         + +TY+T+I   CA+   
Sbjct: 112 LPLSTTTFNIMLRHLCTAGKPVRALELLRQMPSP--------NAVTYNTVIAGFCAR--G 161

Query: 237 LFDEAIEWFERMY-KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG-WKPDPIA 294
                IE    M  + G+ PD+ TY+ ++  + K GKVE+   +++  +  G  +P+ + 
Sbjct: 162 RVQAGIEIMREMRERGGIAPDKYTYATVISGWCKVGKVEDATKVFDEMLTEGKVEPNAVM 221

Query: 295 FSVLGKMFGESGDYD-GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
           ++ L   + + G+ +  +RY   EM   GV   +  YN  +  +   G+   A +L +EM
Sbjct: 222 YNALIGGYCDQGNLEVALRY-RGEMVDRGVSMTVATYNLFVHTLFMEGRAAEAHALVEEM 280

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
            E GL PD  T   LI  Y K    K A++++E M         + Y +L++  +  G+V
Sbjct: 281 GEKGLAPDAFTYNILINGYCKEGKEKKAMKMFEVMVGKGIRATVVTYTSLIHALSMKGMV 340

Query: 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTC 473
           +E +RLF D  +    +PD + Y A++N + +GG++D A E+  EM +  +  + +    
Sbjct: 341 QETDRLFND-AVRRGIRPDLFMYNALINSHCTGGDMDRAFEIMGEMEKKRITPDDVTYNT 399

Query: 474 LIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCL--QQ 531
           L++ L    R+D+   +      RG++PD      L+S  S+    +D  KV   +  + 
Sbjct: 400 LMRGLCLLGRLDEARGLIEEMTKRGIQPDLVSYNTLISGYSMKGDIKDAVKVRDEMMGKG 459

Query: 532 ANPKLVAFLNLIE 544
            NP L+ +  +I+
Sbjct: 460 FNPTLLTYNAMIK 472



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 117/256 (45%), Gaps = 1/256 (0%)

Query: 185 METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEW 244
           M    YN+ + +L    +      L  EM    +  D  TY+ +I    +     +A++ 
Sbjct: 252 MTVATYNLFVHTLFMEGRAAEAHALVEEMGEKGLAPDAFTYNILINGYCKEGKEKKAMKM 311

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
           FE M   G+    VTY++++   +  G V+E   L+   V  G +PD   ++ L      
Sbjct: 312 FEVMVGKGIRATVVTYTSLIHALSMKGMVQETDRLFNDAVRRGIRPDLFMYNALINSHCT 371

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
            GD D    ++ EM+   + P+ V YNTL+  +   G+   AR L +EM + G+ PD  +
Sbjct: 372 GGDMDRAFEIMGEMEKKRITPDDVTYNTLMRGLCLLGRLDEARGLIEEMTKRGIQPDLVS 431

Query: 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
              LI  Y      KDA+++ + M    +    + YN ++      G   +AE L ++M 
Sbjct: 432 YNTLISGYSMKGDIKDAVKVRDEMMGKGFNPTLLTYNAMIKGLCLNGQGGDAEDLVKEM- 490

Query: 425 LSDYCKPDNYSYTAML 440
           + +   PD+ +Y +++
Sbjct: 491 VGNGITPDDSTYISLI 506



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 87/363 (23%), Positives = 154/363 (42%), Gaps = 51/363 (14%)

Query: 200 GRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTG-LMPDEV 258
           GR    IE +        I  D  TY+T+I+   +    ++A + F+ M   G + P+ V
Sbjct: 161 GRVQAGIEIMREMRERGGIAPDKYTYATVISGWCKVGKVEDATKVFDEMLTEGKVEPNAV 220

Query: 259 TYSAILDVYAKSGKVEEVL----SLYERGVA----------------------------- 285
            Y+A++  Y   G +E  L     + +RGV+                             
Sbjct: 221 MYNALIGGYCDQGNLEVALRYRGEMVDRGVSMTVATYNLFVHTLFMEGRAAEAHALVEEM 280

Query: 286 --SGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
              G  PD   +++L   + + G       + + M   G++  +V Y +L+ A+   G  
Sbjct: 281 GEKGLAPDAFTYNILINGYCKEGKEKKAMKMFEVMVGKGIRATVVTYTSLIHALSMKGMV 340

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
                LF++ V  G+ PD     ALI  +        A E+   M + +   D + YNTL
Sbjct: 341 QETDRLFNDAVRRGIRPDLFMYNALINSHCTGGDMDRAFEIMGEMEKKRITPDDVTYNTL 400

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           +     +G ++EA  L E+M      +PD  SY  +++ Y   G++ +A+++ +EM   G
Sbjct: 401 MRGLCLLGRLDEARGLIEEMT-KRGIQPDLVSYNTLISGYSMKGDIKDAVKVRDEMMGKG 459

Query: 464 VAINVMGCTCLIQ--CL-GKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCE--T 518
               ++    +I+  CL G+    +DLV+     +  G+ PDD       + +SL E  T
Sbjct: 460 FNPTLLTYNAMIKGLCLNGQGGDAEDLVKEM---VGNGITPDDS------TYISLIEGLT 510

Query: 519 SED 521
           +ED
Sbjct: 511 TED 513



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 85/183 (46%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           + Y   + +L      Q  ++L N+ V   I  D   Y+ +I         D A E    
Sbjct: 325 VTYTSLIHALSMKGMVQETDRLFNDAVRRGIRPDLFMYNALINSHCTGGDMDRAFEIMGE 384

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M K  + PD+VTY+ ++      G+++E   L E     G +PD ++++ L   +   GD
Sbjct: 385 MEKKRITPDDVTYNTLMRGLCLLGRLDEARGLIEEMTKRGIQPDLVSYNTLISGYSMKGD 444

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
                 V  EM   G  P L+ YN +++ +   G+ G A  L  EMV +G+TPD+ T  +
Sbjct: 445 IKDAVKVRDEMMGKGFNPTLLTYNAMIKGLCLNGQGGDAEDLVKEMVGNGITPDDSTYIS 504

Query: 368 LIK 370
           LI+
Sbjct: 505 LIE 507


>gi|242045792|ref|XP_002460767.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
 gi|241924144|gb|EER97288.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
          Length = 762

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 133/290 (45%), Gaps = 1/290 (0%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
           +EM    +  D +TY+T+I    R     EA +  + M    L  DEVTY+ ++D Y K 
Sbjct: 388 DEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRLDVDEVTYTVLVDGYCKR 447

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
           GK+ E   ++   V  G  P+ + ++ L     + GD      +L EM + G++ N   Y
Sbjct: 448 GKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNACTY 507

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
           N+L+  + KAG    A     +M  +GL PD  T T LI    K+     A +L + M +
Sbjct: 508 NSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLD 567

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
           N      + YN L+N     G VE  ++L E M L     P+  +Y +++  Y  G N+ 
Sbjct: 568 NGIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWM-LEKNIHPNATTYNSLMKQYCIGNNMK 626

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
           +  E+++ M    V  N      LI+   KAR + +        I++G +
Sbjct: 627 STTEIYKGMCSRNVEPNENTYNILIKGHCKARSMKEAQYFHNEMIEKGFR 676



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 124/262 (47%), Gaps = 3/262 (1%)

Query: 204 QLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAI 263
           Q   +L +EM +  +EL+  TY+++I    +    D+A+     M   GL PD  TY+ +
Sbjct: 486 QAANELLHEMSNKGLELNACTYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTL 545

Query: 264 LDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGV 323
           +D   KSG+++    L +  + +G KP  + ++VL   F  SG  +G + +L+ M    +
Sbjct: 546 IDALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNI 605

Query: 324 QPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALE 383
            PN   YN+L++             ++  M    + P+E T   LIK + KAR  K+A  
Sbjct: 606 HPNATTYNSLMKQYCIGNNMKSTTEIYKGMCSRNVEPNENTYNILIKGHCKARSMKEAQY 665

Query: 384 LWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY-CKPDNYSYTAMLNI 442
               M E  + +    Y+ L+ +        EA +LF DM+   +  +PD Y++    N 
Sbjct: 666 FHNEMIEKGFRLTASSYSALIRLLNKKKKFVEARKLFHDMRKEGFTAEPDVYNFYIDFNF 725

Query: 443 YGSGGNVDNAIELFEEMSELGV 464
             +  N++  + L +E+ E  +
Sbjct: 726 --NEDNLEATLALCDELVEASI 745



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 69/319 (21%), Positives = 141/319 (44%), Gaps = 1/319 (0%)

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           P + + Y + +       + +   +L ++MV+  +E +   Y++++          +A+ 
Sbjct: 291 PPDVVTYGILIHGYCALGELENAVKLLDDMVARGVEPNATVYTSVVALLCDKGRVSDALT 350

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
             E M    ++ DE  Y+ +L  +   G +      ++     G   D + ++ L     
Sbjct: 351 VVEDMVHHKVILDEAVYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTLINGLC 410

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
            +G+      VLQEM +  +  + V Y  L++   K GK   A  + + MV+ G+ P+  
Sbjct: 411 RAGELKEAEKVLQEMLARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVV 470

Query: 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
           T TAL     K    + A EL   M      ++   YN+L+N     G +++A R   DM
Sbjct: 471 TYTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLDQAMRTMADM 530

Query: 424 KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483
             +   KPD Y+YT +++     G +D A +L +EM + G+   ++    L+     + R
Sbjct: 531 DAAGL-KPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLMNGFCMSGR 589

Query: 484 IDDLVRVFGVSIDRGVKPD 502
           ++   ++    +++ + P+
Sbjct: 590 VEGGKKLLEWMLEKNIHPN 608



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 86/178 (48%), Gaps = 4/178 (2%)

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
           N+  YN LL+ +  AG+   AR LFDEM      PD  T   LI  Y      ++A++L 
Sbjct: 261 NVCSYNILLKVLCGAGRVEDARQLFDEMASP---PDVVTYGILIHGYCALGELENAVKLL 317

Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445
           + M       +  +Y +++ +  D G V +A  + EDM +      D   YT +L+ + +
Sbjct: 318 DDMVARGVEPNATVYTSVVALLCDKGRVSDALTVVEDM-VHHKVILDEAVYTTVLSGFCN 376

Query: 446 GGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
            G++ +A   F+EM   G+A + +  T LI  L +A  + +  +V    + R +  D+
Sbjct: 377 KGDLVSARRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRLDVDE 434



 Score = 49.7 bits (117), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 79/164 (48%), Gaps = 14/164 (8%)

Query: 349 LFDEMVESGLTPDEKTLTALIKIYGKARWAKD-ALELWERMRENKWPMDFILYNTLLNMC 407
           L   + + G++P  +   A++     +R   D A+EL++ + +     +   YN LL + 
Sbjct: 222 LLRRVRQYGISPSPEACNAVL-----SRLPLDEAIELFQGLPDK----NVCSYNILLKVL 272

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
              G VE+A +LF++M       PD  +Y  +++ Y + G ++NA++L ++M   GV  N
Sbjct: 273 CGAGRVEDARQLFDEMA----SPPDVVTYGILIHGYCALGELENAVKLLDDMVARGVEPN 328

Query: 468 VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
               T ++  L    R+ D + V    +   V  D+ +   +LS
Sbjct: 329 ATVYTSVVALLCDKGRVSDALTVVEDMVHHKVILDEAVYTTVLS 372



 Score = 42.4 bits (98), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 32/172 (18%), Positives = 73/172 (42%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           + YNV M       + +  ++L   M+   I  +  TY++++      N      E ++ 
Sbjct: 575 VTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYKG 634

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M    + P+E TY+ ++  + K+  ++E    +   +  G++    ++S L ++  +   
Sbjct: 635 MCSRNVEPNENTYNILIKGHCKARSMKEAQYFHNEMIEKGFRLTASSYSALIRLLNKKKK 694

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
           +   R +  +M+  G      VYN  ++            +L DE+VE+ + 
Sbjct: 695 FVEARKLFHDMRKEGFTAEPDVYNFYIDFNFNEDNLEATLALCDELVEASIV 746


>gi|410110083|gb|AFV61121.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           cujabensis]
          Length = 359

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/345 (23%), Positives = 165/345 (47%), Gaps = 6/345 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K     P + + YN  +      + F+    L +EM +  +  +  +YS
Sbjct: 20  YSKAISIFSRLKRSGFTP-DLVAYNAMINVFGKAKLFREARSLISEMKTXGVMPNTTSYS 78

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY + G  +E   L+      
Sbjct: 79  TLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 138

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   ++ N+V YN+++   GK  +   A
Sbjct: 139 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKA 198

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R +   +D IL+ T++  
Sbjct: 199 NNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVA 258

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K     +PDN      ++I    G ++ A  +F +  + G   
Sbjct: 259 YERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVK 313

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
           ++     +I  L K ++  ++V VF      G  PD  +   +L+
Sbjct: 314 DITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSNVIAVVLN 358



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 133/261 (50%), Gaps = 1/261 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D + YS +I  +++   + +AI  F R+ ++G  PD V Y+A+++V+ K+    E  SL 
Sbjct: 3   DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLI 62

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
                 G  P+  ++S L  M+ E+  +     V  EM+ +    +L   N +++  G+ 
Sbjct: 63  SEMKTXGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQL 122

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G    A  LF  M + G+ P+  +   L+++YG A    +A+ L+  M+      + + Y
Sbjct: 123 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 182

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           N+++ +       E+A  L ++M+ S   +P++ +Y+ +++I+G  G +D A  LF+++ 
Sbjct: 183 NSMIMIYGKTLEHEKANNLIQEMQ-SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLR 241

Query: 461 ELGVAINVMGCTCLIQCLGKA 481
             GV I+ +    +I    +A
Sbjct: 242 SSGVEIDQILFQTMIVAYERA 262



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 106/222 (47%), Gaps = 1/222 (0%)

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
           D + +S L ++  +  DY     +   +K  G  P+LV YN ++   GKA     ARSL 
Sbjct: 3   DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLI 62

Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
            EM   G+ P+  + + L+ +Y + +   +AL ++  MRE K  +D    N ++++   +
Sbjct: 63  SEMKTXGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQL 122

Query: 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG 470
           G+ +EA++LF  M+     +P+  SY  +L +YG       AI LF  M    +  NV+ 
Sbjct: 123 GMAKEADKLFWGMRKMG-IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVT 181

Query: 471 CTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSV 512
              +I   GK    +    +      RG++P+      ++S+
Sbjct: 182 YNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISI 223



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 68/153 (44%), Gaps = 1/153 (0%)

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
           A+ ++ R++ + +  D + YN ++N+     L  EA  L  +MK      P+  SY+ +L
Sbjct: 23  AISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTXG-VMPNTTSYSTLL 81

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
            +Y        A+ +F EM E+   +++  C  +I   G+     +  ++F      G++
Sbjct: 82  TMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 141

Query: 501 PDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN 533
           P+      LL V    E   +   +   +Q+ N
Sbjct: 142 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKN 174



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 35/159 (22%), Positives = 65/159 (40%), Gaps = 31/159 (19%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY- 267
           L  EM S  IE ++ITYSTII+   +    D A   F+++  +G+  D++ +  ++  Y 
Sbjct: 201 LIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYE 260

Query: 268 ------------------------------AKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
                                         A +G++EE   ++ + + +G   D   F  
Sbjct: 261 RAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFER 320

Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA 336
           +  +  +   Y  +  V  +M+ LG  P+  V   +L A
Sbjct: 321 MIHLLSKYKKYSNVVEVFDKMRGLGYFPDSNVIAVVLNA 359


>gi|297843788|ref|XP_002889775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335617|gb|EFH66034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 144/315 (45%), Gaps = 5/315 (1%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
           TI    T +    G+  +L++++ +   + ++    +TY+ ++    +    DEAI++  
Sbjct: 243 TILIEATCRDSGVGQAMKLLDEMRDRGCTPDV----VTYNVLVNGICKEGRLDEAIKFLN 298

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
            M  +G  P+ +T++ IL     +G+  +   L    +  G+ P  + F++L       G
Sbjct: 299 DMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKG 358

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
                  +L++M   G QPN + YN LL    K  K   A    + MV  G  PD  T  
Sbjct: 359 LLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYN 418

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
            ++    K    +DA+E+  ++         I YNT+++  A  G   +A +L ++M+  
Sbjct: 419 TMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAK 478

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
           D  KPD  +Y++++      G VD AI+ F E   +GV  N +    ++  L K R+ D 
Sbjct: 479 DL-KPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGVRPNAVTFNSIMLGLCKTRQTDR 537

Query: 487 LVRVFGVSIDRGVKP 501
            +      I+RG KP
Sbjct: 538 AIDFLVYMINRGCKP 552



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 138/295 (46%), Gaps = 8/295 (2%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           F N + S    P   I +N+ ++S+    ++   E+L  +M+        +T++ +I   
Sbjct: 296 FLNDMPSSGCQP-NVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFL 354

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            R  L   AI+  E+M K G  P+ ++Y+ +L  + K  K++  +   ER V+ G  PD 
Sbjct: 355 CRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDI 414

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           + ++ +     + G  +    +L ++ S G  P L+ YNT+++ + KAGK G A  L DE
Sbjct: 415 VTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDE 474

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT-LLNMCADIG 411
           M    L PD  T ++L+    +     +A++ +          + + +N+ +L +C    
Sbjct: 475 MRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGVRPNAVTFNSIMLGLCK--- 531

Query: 412 LVEEAERLFEDM--KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
              + +R  + +   ++  CKP   SYT ++      G    A+EL  E+   G+
Sbjct: 532 -TRQTDRAIDFLVYMINRGCKPTETSYTILIEGLAYEGMAKEALELLNELCNKGL 585



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 145/326 (44%), Gaps = 6/326 (1%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D I  +T+I    R     +A +  E +  +G +PD +TY+ ++  Y K+G++   LS+ 
Sbjct: 136 DIIPCTTLIRGFCRMGKTRKAAKILEVLEGSGAVPDVITYNVMISGYCKAGEINNALSVL 195

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
           +R   S   PD + ++ + +   +SG       VL  M      P+++ Y  L+EA  + 
Sbjct: 196 DRMSVS---PDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRD 252

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
              G A  L DEM + G TPD  T   L+    K     +A++    M  +    + I +
Sbjct: 253 SGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITH 312

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           N +L      G   +AE+L  DM    +  P   ++  ++N     G +  AI++ E+M 
Sbjct: 313 NIILRSMCSTGRWMDAEKLLADMLRKGF-SPSVVTFNILINFLCRKGLLGRAIDILEKMP 371

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSE 520
           + G   N +    L+    K +++D  +      + RG  PD      +L+ +      E
Sbjct: 372 KHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVE 431

Query: 521 DVGKVITCL--QQANPKLVAFLNLIE 544
           D  +++  L  +  +P L+ +  +I+
Sbjct: 432 DAVEILNQLSSKGCSPVLITYNTVID 457



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 125/269 (46%), Gaps = 4/269 (1%)

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
           R    +E  ++ E M   G +PD +  + ++  + + GK  +   + E    SG  PD I
Sbjct: 114 RTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRMGKTRKAAKILEVLEGSGAVPDVI 173

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
            ++V+   + ++G+ +    VL  M    V P++V YNT+L ++  +GK   A  + D M
Sbjct: 174 TYNVMISGYCKAGEINNALSVLDRMS---VSPDVVTYNTILRSLCDSGKLKQAMEVLDRM 230

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
           ++    PD  T T LI+   +      A++L + MR+     D + YN L+N     G +
Sbjct: 231 LQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRL 290

Query: 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTC 473
           +EA +   DM  S  C+P+  ++  +L    S G   +A +L  +M   G + +V+    
Sbjct: 291 DEAIKFLNDMP-SSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNI 349

Query: 474 LIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           LI  L +   +   + +       G +P+
Sbjct: 350 LINFLCRKGLLGRAIDILEKMPKHGCQPN 378


>gi|356561705|ref|XP_003549120.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 445

 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 158/325 (48%), Gaps = 9/325 (2%)

Query: 169 KSYFFFNWIKSQNLF-----PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNI 223
           + ++  + + S NL      P  T  +N  + SL   +++  +  L  +   N I  D  
Sbjct: 35  QPHYHHHAVASFNLMLLMRPPPPTFLFNNILSSLVKNKRYPTVISLFKQFEPNGITPDLC 94

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           T S +I C         A   F  + K G  PD +T + ++      G++++ L  +++ 
Sbjct: 95  TLSILINCFCHQAHITLAFSVFANILKRGFHPDAITLNTLIKGLCFRGEIKKTLYFHDQV 154

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
           VA G++ D +++  L     ++G+   +  +L++++   V+P++V+YNT++ ++ K    
Sbjct: 155 VAQGFQLDQVSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLL 214

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
           G A  ++ EM+  G++PD  T T LI  +      K+A  L   M+      D   ++ L
Sbjct: 215 GDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGKMKEAFSLLNEMKLKNINPDVYTFSVL 274

Query: 404 LNMCADIG---LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           ++     G   +V+EA  LFE+MK  +   PD  +Y ++++      +++ AI L +EM 
Sbjct: 275 IDALGKEGKKKMVDEAMSLFEEMKHKNMI-PDIVTYNSLIDGLCKNHHLERAIALLKEMK 333

Query: 461 ELGVAINVMGCTCLIQCLGKARRID 485
           E G+  +V   T L+  L K  R++
Sbjct: 334 EHGIQPDVYSYTILLDGLCKGGRLE 358



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 137/305 (44%), Gaps = 15/305 (4%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           +K+ +F + + +Q  F ++ + Y   +  L    + + + +L  ++  + ++ D + Y+T
Sbjct: 145 KKTLYFHDQVVAQG-FQLDQVSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDVVMYNT 203

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           II    +  L  +A + +  M   G+ PD VTY+ ++  +   GK++E  SL        
Sbjct: 204 IINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGKMKEAFSLLNEMKLKN 263

Query: 288 WKPDPIAFSVLGKMFGESGD---YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344
             PD   FSVL    G+ G     D    + +EMK   + P++V YN+L++ + K     
Sbjct: 264 INPDVYTFSVLIDALGKEGKKKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLE 323

Query: 345 LARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM-----RENKWPMDFIL 399
            A +L  EM E G+ PD  + T L+    K    + A E ++ +       N WP     
Sbjct: 324 RAIALLKEMKEHGIQPDVYSYTILLDGLCKGGRLEIAKEFFQHLLVKGCHLNVWP----- 378

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           YN ++N     GL  EA  L   M+    C P+  ++  ++         D A ++  EM
Sbjct: 379 YNVMINGLCKAGLFGEAMDLKSKME-GKGCMPNAITFRTIICALSEKDENDKAEKILREM 437

Query: 460 SELGV 464
              G+
Sbjct: 438 IARGL 442



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 139/320 (43%), Gaps = 4/320 (1%)

Query: 183 FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
           F  + I  N  +K L F  + +      +++V+   +LD ++Y T+I    +        
Sbjct: 124 FHPDAITLNTLIKGLCFRGEIKKTLYFHDQVVAQGFQLDQVSYGTLINGLCKAGETKAVA 183

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
               ++    + PD V Y+ I++   K+  + +   +Y   +  G  PD + ++ L   F
Sbjct: 184 RLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGF 243

Query: 303 GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGL---ARSLFDEMVESGLT 359
              G       +L EMK   + P++  ++ L++A+GK GK  +   A SLF+EM    + 
Sbjct: 244 CIMGKMKEAFSLLNEMKLKNINPDVYTFSVLIDALGKEGKKKMVDEAMSLFEEMKHKNMI 303

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
           PD  T  +LI    K    + A+ L + M+E+    D   Y  LL+     G +E A+  
Sbjct: 304 PDIVTYNSLIDGLCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGLCKGGRLEIAKEF 363

Query: 420 FEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479
           F+ + L   C  + + Y  M+N     G    A++L  +M   G   N +    +I  L 
Sbjct: 364 FQHL-LVKGCHLNVWPYNVMINGLCKAGLFGEAMDLKSKMEGKGCMPNAITFRTIICALS 422

Query: 480 KARRIDDLVRVFGVSIDRGV 499
           +    D   ++    I RG+
Sbjct: 423 EKDENDKAEKILREMIARGL 442



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/301 (22%), Positives = 121/301 (40%), Gaps = 39/301 (12%)

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD-------- 291
            A+  F  M      P    ++ IL    K+ +   V+SL+++   +G  PD        
Sbjct: 41  HAVASFNLMLLMRPPPPTFLFNNILSSLVKNKRYPTVISLFKQFEPNGITPDLCTLSILI 100

Query: 292 ---------PIAFSVLGKMFGESGDYDGIR------------------YVLQEMKSLGVQ 324
                     +AFSV   +       D I                   Y   ++ + G Q
Sbjct: 101 NCFCHQAHITLAFSVFANILKRGFHPDAITLNTLIKGLCFRGEIKKTLYFHDQVVAQGFQ 160

Query: 325 PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384
            + V Y TL+  + KAG+      L  ++    + PD      +I    K +   DA ++
Sbjct: 161 LDQVSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDV 220

Query: 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYG 444
           +  M       D + Y TL++    +G ++EA  L  +MKL +   PD Y+++ +++  G
Sbjct: 221 YSEMIVKGISPDVVTYTTLIHGFCIMGKMKEAFSLLNEMKLKNI-NPDVYTFSVLIDALG 279

Query: 445 SGGN---VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
             G    VD A+ LFEEM    +  +++    LI  L K   ++  + +     + G++P
Sbjct: 280 KEGKKKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALLKEMKEHGIQP 339

Query: 502 D 502
           D
Sbjct: 340 D 340


>gi|357439849|ref|XP_003590202.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479250|gb|AES60453.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 772

 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 158/328 (48%), Gaps = 3/328 (0%)

Query: 178 KSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNL 237
           K Q +F + T  Y++ ++        +  E++  EM    IE+D   YS++I+ ++R   
Sbjct: 280 KEQVVFSVAT--YSILIQWYSSSGDIEEAEKIFEEMREKNIEMDVYVYSSMISWSRRLGN 337

Query: 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
              A   F+ M +  ++P+  TY A++    K+G++E    L     + G   + + F+ 
Sbjct: 338 MKRAFALFDEMSQRDIVPNAHTYGALIGGVCKAGQMEAAEILLLEMQSKGVDLNLVIFNT 397

Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
               +   G  D    +   M+  G+  ++  YN L   + K  +   A+ + + MVE G
Sbjct: 398 TMDGYCRRGKMDEALRLQAIMEKKGINADVFTYNILANGLCKLHRYDEAKCILNSMVEKG 457

Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417
           + P+  T T  I+IY K     +A  L+  M +     + I YNTL++       V++A 
Sbjct: 458 VKPNVVTFTMFIEIYCKEGNLAEAERLFRDMEKKGEVPNIITYNTLIDAYCKKEKVKQAH 517

Query: 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
           ++  +M ++    PD Y+Y+++++     G VD A++LF EM   G+  NV   T +I  
Sbjct: 518 KIKSEM-INKGLLPDLYTYSSLIHGECIVGRVDEALKLFNEMRLKGITRNVATYTSMISG 576

Query: 478 LGKARRIDDLVRVFGVSIDRGVKPDDRL 505
           L K  R D+  +++   +  G+ PDDR+
Sbjct: 577 LSKEGRADEAFKLYDEMMKIGLIPDDRV 604



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 89/379 (23%), Positives = 176/379 (46%), Gaps = 14/379 (3%)

Query: 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG-WKPDPIAF 295
           LFDE I  ++ + + GL+ +E +   +L    + G+V+  +  + R V S  ++    + 
Sbjct: 160 LFDETIRVYDYVEEKGLVIEERSCFVLLLALKRCGEVDFCVRFFHRMVESNKFEIRVQSL 219

Query: 296 SVLGKMFGESGDYDGIRYVLQEMKSLG-VQPNLVVYNTLLEA-MGKAGKPGLARSLFDEM 353
           +++  +    G+ +  + ++ EM   G V+PN+  YNTLL A +G+  + G+   +   M
Sbjct: 220 TLVIDVLCRRGEVEKAKELMDEMVGKGIVKPNVFTYNTLLNAYVGRKDRKGVD-EILKLM 278

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
            +  +     T + LI+ Y  +   ++A +++E MRE    MD  +Y+++++    +G +
Sbjct: 279 EKEQVVFSVATYSILIQWYSSSGDIEEAEKIFEEMREKNIEMDVYVYSSMISWSRRLGNM 338

Query: 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTC 473
           + A  LF++M   D   P+ ++Y A++      G ++ A  L  EM   GV +N++    
Sbjct: 339 KRAFALFDEMSQRDIV-PNAHTYGALIGGVCKAGQMEAAEILLLEMQSKGVDLNLVIFNT 397

Query: 474 LIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSE-DVGKVI---TCL 529
            +    +  ++D+ +R+  +   +G+  D      L +   LC+    D  K I      
Sbjct: 398 TMDGYCRRGKMDEALRLQAIMEKKGINADVFTYNILAN--GLCKLHRYDEAKCILNSMVE 455

Query: 530 QQANPKLVAFLNLIED--NSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNE 587
           +   P +V F   IE           +  FR++ K  EV     + N LID    +   +
Sbjct: 456 KGVKPNVVTFTMFIEIYCKEGNLAEAERLFRDMEKKGEVPNIITY-NTLIDAYCKKEKVK 514

Query: 588 RAHELLYLGTLYGLYPGLH 606
           +AH++       GL P L+
Sbjct: 515 QAHKIKSEMINKGLLPDLY 533



 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 83/372 (22%), Positives = 147/372 (39%), Gaps = 77/372 (20%)

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEV-TYSAILDVYAKSGKVEEVLSLYERGVASGW-KP 290
           KRC   D  + +F RM ++      V + + ++DV  + G+VE+   L +  V  G  KP
Sbjct: 191 KRCGEVDFCVRFFHRMVESNKFEIRVQSLTLVIDVLCRRGEVEKAKELMDEMVGKGIVKP 250

Query: 291 DPI-----------------------------------AFSVLGKMFGESGDYDGIRYVL 315
           +                                      +S+L + +  SGD +    + 
Sbjct: 251 NVFTYNTLLNAYVGRKDRKGVDEILKLMEKEQVVFSVATYSILIQWYSSSGDIEEAEKIF 310

Query: 316 QEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA 375
           +EM+   ++ ++ VY++++    + G    A +LFDEM +  + P+  T  ALI    KA
Sbjct: 311 EEMREKNIEMDVYVYSSMISWSRRLGNMKRAFALFDEMSQRDIVPNAHTYGALIGGVCKA 370

Query: 376 RWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM------------ 423
              + A  L   M+     ++ +++NT ++     G ++EA RL   M            
Sbjct: 371 GQMEAAEILLLEMQSKGVDLNLVIFNTTMDGYCRRGKMDEALRLQAIMEKKGINADVFTY 430

Query: 424 --------KLSDY--------------CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461
                   KL  Y               KP+  ++T  + IY   GN+  A  LF +M +
Sbjct: 431 NILANGLCKLHRYDEAKCILNSMVEKGVKPNVVTFTMFIEIYCKEGNLAEAERLFRDMEK 490

Query: 462 LGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSED 521
            G   N++    LI    K  ++    ++    I++G+ PD      L +  SL      
Sbjct: 491 KGEVPNIITYNTLIDAYCKKEKVKQAHKIKSEMINKGLLPD------LYTYSSLIHGECI 544

Query: 522 VGKVITCLQQAN 533
           VG+V   L+  N
Sbjct: 545 VGRVDEALKLFN 556


>gi|15238505|ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65560
 gi|8978284|dbj|BAA98175.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737310|dbj|BAF00601.1| hypothetical protein [Arabidopsis thaliana]
 gi|332010688|gb|AED98071.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 915

 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 164/331 (49%), Gaps = 5/331 (1%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTII-TC 231
            F  +K    FP     Y V +KSL    +      L  EM    I+ +  TY+ +I + 
Sbjct: 310 LFVKMKDDECFPTVRT-YTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSL 368

Query: 232 AKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291
             +C  F++A E   +M + GLMP+ +TY+A+++ Y K G +E+ + + E   +    P+
Sbjct: 369 CSQCK-FEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPN 427

Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
              ++ L K + +S  +  +  VL +M    V P++V YN+L++   ++G    A  L  
Sbjct: 428 TRTYNELIKGYCKSNVHKAMG-VLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLS 486

Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411
            M + GL PD+ T T++I    K++  ++A +L++ + +     + ++Y  L++     G
Sbjct: 487 LMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAG 546

Query: 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC 471
            V+EA  + E M LS  C P++ ++ A+++   + G +  A  L E+M ++G+   V   
Sbjct: 547 KVDEAHLMLEKM-LSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTD 605

Query: 472 TCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           T LI  L K    D     F   +  G KPD
Sbjct: 606 TILIHRLLKDGDFDHAYSRFQQMLSSGTKPD 636



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 88/370 (23%), Positives = 155/370 (41%), Gaps = 55/370 (14%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
           N+M+  ++  D +TY+++I    R   FD A      M   GL+PD+ TY++++D   KS
Sbjct: 451 NKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKS 510

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
            +VEE   L++     G  P+ + ++ L   + ++G  D    +L++M S    PN + +
Sbjct: 511 KRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTF 570

Query: 331 NTLLEAMGKAG-------------KPGL----------------------ARSLFDEMVE 355
           N L+  +   G             K GL                      A S F +M+ 
Sbjct: 571 NALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLS 630

Query: 356 SGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEE 415
           SG  PD  T T  I+ Y +     DA ++  +MREN    D   Y++L+    D+G    
Sbjct: 631 SGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNF 690

Query: 416 AERLFEDMKLSDYCKPDNYSYTAMLNI-----YGSGGN-------------VDNAIELFE 457
           A  + + M+ +  C+P  +++ +++       YG                  D  +EL E
Sbjct: 691 AFDVLKRMRDTG-CEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLE 749

Query: 458 EMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFG-VSIDRGVKPDDRLCGCLLSVVSLC 516
           +M E  V  N      LI  + +   +    +VF  +  + G+ P + +   LLS     
Sbjct: 750 KMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKL 809

Query: 517 ETSEDVGKVI 526
           +   +  KV+
Sbjct: 810 KKHNEAAKVV 819



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 138/297 (46%), Gaps = 6/297 (2%)

Query: 210 ANEMVSNEIEL----DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
           AN+ VS  +E     D  TY+++I    +    D A + F  M   G   +EV Y+ ++ 
Sbjct: 237 ANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIH 296

Query: 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325
               + +++E + L+ +       P    ++VL K    S        +++EM+  G++P
Sbjct: 297 GLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKP 356

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
           N+  Y  L++++    K   AR L  +M+E GL P+  T  ALI  Y K    +DA+++ 
Sbjct: 357 NIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVV 416

Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445
           E M   K   +   YN L+        V +A  +   M L     PD  +Y ++++    
Sbjct: 417 ELMESRKLSPNTRTYNELIKGYCKSN-VHKAMGVLNKM-LERKVLPDVVTYNSLIDGQCR 474

Query: 446 GGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            GN D+A  L   M++ G+  +    T +I  L K++R+++   +F     +GV P+
Sbjct: 475 SGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPN 531



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 87/360 (24%), Positives = 168/360 (46%), Gaps = 10/360 (2%)

Query: 190 YNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERM 248
           YN  + SL RFG   ++ +Q+  EM+ +++  +  TY+ ++    +    +EA ++  ++
Sbjct: 186 YNTLLNSLARFGLVDEM-KQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKI 244

Query: 249 YKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY 308
            + GL PD  TY++++  Y +   ++    ++      G + + +A++ L      +   
Sbjct: 245 VEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRI 304

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
           D    +  +MK     P +  Y  L++++  + +   A +L  EM E+G+ P+  T T L
Sbjct: 305 DEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVL 364

Query: 369 IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428
           I         + A EL  +M E     + I YN L+N     G++E+A  + E M+ S  
Sbjct: 365 IDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELME-SRK 423

Query: 429 CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLV 488
             P+  +Y  ++  Y    NV  A+ +  +M E  V  +V+    LI    ++   D   
Sbjct: 424 LSPNTRTYNELIKGY-CKSNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAY 482

Query: 489 RVFGVSIDRGVKPDDRLCGCLLSVVSLCETS--EDVGKVITCLQQ--ANPKLVAFLNLIE 544
           R+  +  DRG+ PD      ++   SLC++   E+   +   L+Q   NP +V +  LI+
Sbjct: 483 RLLSLMNDRGLVPDQWTYTSMID--SLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALID 540



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 70/313 (22%), Positives = 137/313 (43%), Gaps = 18/313 (5%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           +  +M+S     +++T++ +I          EA    E+M K GL P   T + ++    
Sbjct: 554 MLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLL 613

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           K G  +   S +++ ++SG KPD   ++   + +   G       ++ +M+  GV P+L 
Sbjct: 614 KDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLF 673

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI-----YGKARWAKDAL- 382
            Y++L++  G  G+   A  +   M ++G  P + T  +LIK      YGK + ++  L 
Sbjct: 674 TYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELC 733

Query: 383 ------------ELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCK 430
                       EL E+M E+    +   Y  L+    ++G +  AE++F+ M+ ++   
Sbjct: 734 AMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGIS 793

Query: 431 PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRV 490
           P    + A+L+        + A ++ ++M  +G    +  C  LI  L K    +    V
Sbjct: 794 PSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSV 853

Query: 491 FGVSIDRGVKPDD 503
           F   +  G   D+
Sbjct: 854 FQNLLQCGYYEDE 866



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 85/366 (23%), Positives = 154/366 (42%), Gaps = 27/366 (7%)

Query: 167 WQKSYFFFNWIKSQNLFPME---TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNI 223
           +  +Y   + +  + L P +   T   +   KS R      L + L  + V+  +    +
Sbjct: 478 FDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNV----V 533

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
            Y+ +I    +    DEA    E+M     +P+ +T++A++      GK++E   L E+ 
Sbjct: 534 MYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKM 593

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
           V  G +P     ++L     + GD+D      Q+M S G +P+   Y T ++   + G+ 
Sbjct: 594 VKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRL 653

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMR----ENKWPMDFIL 399
             A  +  +M E+G++PD  T ++LIK YG       A ++ +RMR    E        L
Sbjct: 654 LDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSL 713

Query: 400 YNTLLNM------------CADIGLVE--EAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445
              LL M            CA   ++E      L E M +     P+  SY  ++     
Sbjct: 714 IKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKM-VEHSVTPNAKSYEKLILGICE 772

Query: 446 GGNVDNAIELFEEMSE-LGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR 504
            GN+  A ++F+ M    G++ + +    L+ C  K ++ ++  +V    I  G  P   
Sbjct: 773 VGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLE 832

Query: 505 LCGCLL 510
            C  L+
Sbjct: 833 SCKVLI 838



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 61/116 (52%), Gaps = 6/116 (5%)

Query: 381 ALELWERMREN-----KWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYS 435
            L+L  +M ++     K+ +    YNTLLN  A  GLV+E ++++ +M L D   P+ Y+
Sbjct: 162 VLDLCRKMNKDERFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEM-LEDKVCPNIYT 220

Query: 436 YTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           Y  M+N Y   GNV+ A +   ++ E G+  +    T LI    + + +D   +VF
Sbjct: 221 YNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVF 276



 Score = 45.1 bits (105), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 37/170 (21%), Positives = 70/170 (41%), Gaps = 5/170 (2%)

Query: 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKV---EEVLSLYERGVASGWKPDPIA 294
           FD  +E  E+M +  + P+  +Y  ++    + G +   E+V    +R    G  P  + 
Sbjct: 741 FDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRN--EGISPSELV 798

Query: 295 FSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMV 354
           F+ L     +   ++    V+ +M  +G  P L     L+  + K G+     S+F  ++
Sbjct: 799 FNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLL 858

Query: 355 ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
           + G   DE     +I   GK    +   EL+  M +N        Y+ L+
Sbjct: 859 QCGYYEDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCKFSSQTYSLLI 908



 Score = 40.0 bits (92), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 35/170 (20%), Positives = 73/170 (42%), Gaps = 1/170 (0%)

Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKT-GLMPDEVTY 260
           +F  + +L  +MV + +  +  +Y  +I           A + F+ M +  G+ P E+ +
Sbjct: 740 EFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVF 799

Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
           +A+L    K  K  E   + +  +  G  P   +  VL     + G+ +    V Q +  
Sbjct: 800 NALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLLQ 859

Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK 370
            G   + + +  +++ +GK G       LF+ M ++G     +T + LI+
Sbjct: 860 CGYYEDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCKFSSQTYSLLIE 909


>gi|356497651|ref|XP_003517673.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Glycine max]
          Length = 827

 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 149/296 (50%), Gaps = 1/296 (0%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           +L  EM+ NE+     +  ++I    +  LFD+A+E F  M + G+ PD +  + ILD  
Sbjct: 517 KLLEEMICNELVPTAFSCRSLIRGYYKLGLFDQALEVFNAMLRDGIWPDTIACNYILDGS 576

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            ++G  +E L+L E     G+  +P +++ +     + G  +    +L  M    V P++
Sbjct: 577 CRAGYFKEALTLLEDFQEHGFNLNPHSYNAIIYKLCKEGYPERALELLPRMLKRNVLPSV 636

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
           V Y+TL+    K      A +LF  MV+ G+T +  T T L+ I+  +    +A  +++ 
Sbjct: 637 VNYSTLISGFAKQSNFKRAVNLFTRMVKVGITFNIATYTILMSIFSHSHKMHEAYGIFKE 696

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           M+E    +D I Y TL+    +   +++A  LFE+M   + C P+  +YT +++ +    
Sbjct: 697 MKERGLCLDQISYTTLIVGFCNNREMKKAWALFEEMS-REGCSPNVITYTCIIDGFCKSN 755

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
            +D A  +F++M+   V  +V+  T LI    K    D   +++ V  D+GV PDD
Sbjct: 756 RIDLATWVFDKMNRDSVIPDVVTYTVLIDWYHKHGYFDQAHKLYDVMKDKGVLPDD 811



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 76/329 (23%), Positives = 136/329 (41%), Gaps = 36/329 (10%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  EM  ++I+   ++Y+++I    + N+   A++ F  +  +    D   Y  ++D + 
Sbjct: 448 LMEEMEHSQIKPSIVSYTSLIHGLCKKNMLQNAVDIFHSIGASSCKYDSTVYETLIDGFC 507

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
             G ++  + L E  + +   P   +   L + + + G +D    V   M   G+ P+ +
Sbjct: 508 MQGDMDSAIKLLEEMICNELVPTAFSCRSLIRGYYKLGLFDQALEVFNAMLRDGIWPDTI 567

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
             N +L+   +AG    A +L ++  E G   +  +  A+I    K  + + ALEL  RM
Sbjct: 568 ACNYILDGSCRAGYFKEALTLLEDFQEHGFNLNPHSYNAIIYKLCKEGYPERALELLPRM 627

Query: 389 -RENKWP----------------------------------MDFILYNTLLNMCADIGLV 413
            + N  P                                   +   Y  L+++ +    +
Sbjct: 628 LKRNVLPSVVNYSTLISGFAKQSNFKRAVNLFTRMVKVGITFNIATYTILMSIFSHSHKM 687

Query: 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTC 473
            EA  +F++MK    C  D  SYT ++  + +   +  A  LFEEMS  G + NV+  TC
Sbjct: 688 HEAYGIFKEMKERGLCL-DQISYTTLIVGFCNNREMKKAWALFEEMSREGCSPNVITYTC 746

Query: 474 LIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           +I    K+ RID    VF       V PD
Sbjct: 747 IIDGFCKSNRIDLATWVFDKMNRDSVIPD 775



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 90/181 (49%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           + YST+I+   + + F  A+  F RM K G+  +  TY+ ++ +++ S K+ E   +++ 
Sbjct: 637 VNYSTLISGFAKQSNFKRAVNLFTRMVKVGITFNIATYTILMSIFSHSHKMHEAYGIFKE 696

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
               G   D I+++ L   F  + +      + +EM   G  PN++ Y  +++   K+ +
Sbjct: 697 MKERGLCLDQISYTTLIVGFCNNREMKKAWALFEEMSREGCSPNVITYTCIIDGFCKSNR 756

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
             LA  +FD+M    + PD  T T LI  Y K  +   A +L++ M++     D I +N 
Sbjct: 757 IDLATWVFDKMNRDSVIPDVVTYTVLIDWYHKHGYFDQAHKLYDVMKDKGVLPDDITHNV 816

Query: 403 L 403
           L
Sbjct: 817 L 817



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 126/284 (44%), Gaps = 4/284 (1%)

Query: 232 AKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291
            KR  +F EA++  E M  +G++PD  +YS +++ +   G V + L L E    S  KP 
Sbjct: 402 CKRGEVF-EALQVLEEMKSSGILPDVYSYSILINAFCGKGDVMKCLDLMEEMEHSQIKPS 460

Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
            ++++ L     +         +   + +   + +  VY TL++     G    A  L +
Sbjct: 461 IVSYTSLIHGLCKKNMLQNAVDIFHSIGASSCKYDSTVYETLIDGFCMQGDMDSAIKLLE 520

Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM-RENKWPMDFILYNTLLNMCADI 410
           EM+ + L P   +  +LI+ Y K      ALE++  M R+  WP D I  N +L+     
Sbjct: 521 EMICNELVPTAFSCRSLIRGYYKLGLFDQALEVFNAMLRDGIWP-DTIACNYILDGSCRA 579

Query: 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG 470
           G  +EA  L ED +   +   + +SY A++      G  + A+EL   M +  V  +V+ 
Sbjct: 580 GYFKEALTLLEDFQEHGF-NLNPHSYNAIIYKLCKEGYPERALELLPRMLKRNVLPSVVN 638

Query: 471 CTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVS 514
            + LI    K       V +F   +  G+  +      L+S+ S
Sbjct: 639 YSTLISGFAKQSNFKRAVNLFTRMVKVGITFNIATYTILMSIFS 682



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 70/334 (20%), Positives = 135/334 (40%), Gaps = 40/334 (11%)

Query: 216 NEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEE 275
             +E   + +  +I+     ++ + A++ F      GL PD  T + +L    ++ +VE 
Sbjct: 241 QHVERSGVVFDVLISVFASNSMLENALDVFSNAKHVGLEPDIRTCNFLLKCLVEANRVEF 300

Query: 276 VLSLYERGVASGWKPDPIAFSVLGKMF-GESGDYDGIR---YVLQEMKSLGVQPNLVVYN 331
           V  ++E     G  P+   ++++   +  + G   G+R    +L ++   G +P +V Y+
Sbjct: 301 VRRVFEELKDRGPSPNIYTYTIMMNFYCSDVGCDAGMRQAAVILGKIYRSGEKPTVVTYS 360

Query: 332 TLLEAMGKAGKPGLARSL-----------------------------------FDEMVES 356
           T +  + K G    A  L                                    +EM  S
Sbjct: 361 TYIHGLCKVGNVEAALMLIRNLHYTNQPLNSHSFNDVIYGFCKRGEVFEALQVLEEMKSS 420

Query: 357 GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEA 416
           G+ PD  + + LI  +         L+L E M  ++     + Y +L++      +++ A
Sbjct: 421 GILPDVYSYSILINAFCGKGDVMKCLDLMEEMEHSQIKPSIVSYTSLIHGLCKKNMLQNA 480

Query: 417 ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
             +F  +  S  CK D+  Y  +++ +   G++D+AI+L EEM    +      C  LI+
Sbjct: 481 VDIFHSIGASS-CKYDSTVYETLIDGFCMQGDMDSAIKLLEEMICNELVPTAFSCRSLIR 539

Query: 477 CLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
              K    D  + VF   +  G+ PD   C  +L
Sbjct: 540 GYYKLGLFDQALEVFNAMLRDGIWPDTIACNYIL 573



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 75/350 (21%), Positives = 137/350 (39%), Gaps = 71/350 (20%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           +TYST I    +    + A+     ++ T    +  +++ ++  + K G+V E L + E 
Sbjct: 357 VTYSTYIHGLCKVGNVEAALMLIRNLHYTNQPLNSHSFNDVIYGFCKRGEVFEALQVLEE 416

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV-------------- 328
             +SG  PD  ++S+L   F   GD      +++EM+   ++P++V              
Sbjct: 417 MKSSGILPDVYSYSILINAFCGKGDVMKCLDLMEEMEHSQIKPSIVSYTSLIHGLCKKNM 476

Query: 329 ---------------------VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
                                VY TL++     G    A  L +EM+ + L P   +  +
Sbjct: 477 LQNAVDIFHSIGASSCKYDSTVYETLIDGFCMQGDMDSAIKLLEEMICNELVPTAFSCRS 536

Query: 368 LIKIYGKARWAKDALELWERM-RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
           LI+ Y K      ALE++  M R+  WP D I  N +L+     G  +EA  L ED +  
Sbjct: 537 LIRGYYKLGLFDQALEVFNAMLRDGIWP-DTIACNYILDGSCRAGYFKEALTLLEDFQEH 595

Query: 427 DY--------------CK--------------------PDNYSYTAMLNIYGSGGNVDNA 452
            +              CK                    P   +Y+ +++ +    N   A
Sbjct: 596 GFNLNPHSYNAIIYKLCKEGYPERALELLPRMLKRNVLPSVVNYSTLISGFAKQSNFKRA 655

Query: 453 IELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           + LF  M ++G+  N+   T L+     + ++ +   +F    +RG+  D
Sbjct: 656 VNLFTRMVKVGITFNIATYTILMSIFSHSHKMHEAYGIFKEMKERGLCLD 705



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 87/189 (46%), Gaps = 1/189 (0%)

Query: 180 QNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFD 239
           +N+ P   + Y+  +        F+    L   MV   I  +  TY+ +++     +   
Sbjct: 630 RNVLP-SVVNYSTLISGFAKQSNFKRAVNLFTRMVKVGITFNIATYTILMSIFSHSHKMH 688

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           EA   F+ M + GL  D+++Y+ ++  +  + ++++  +L+E     G  P+ I ++ + 
Sbjct: 689 EAYGIFKEMKERGLCLDQISYTTLIVGFCNNREMKKAWALFEEMSREGCSPNVITYTCII 748

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
             F +S   D   +V  +M    V P++V Y  L++   K G    A  L+D M + G+ 
Sbjct: 749 DGFCKSNRIDLATWVFDKMNRDSVIPDVVTYTVLIDWYHKHGYFDQAHKLYDVMKDKGVL 808

Query: 360 PDEKTLTAL 368
           PD+ T   L
Sbjct: 809 PDDITHNVL 817



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 1/132 (0%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
            ++Y  F  +K + L  ++ I Y   +      R+ +    L  EM       + ITY+ 
Sbjct: 688 HEAYGIFKEMKERGL-CLDQISYTTLIVGFCNNREMKKAWALFEEMSREGCSPNVITYTC 746

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           II    + N  D A   F++M +  ++PD VTY+ ++D Y K G  ++   LY+     G
Sbjct: 747 IIDGFCKSNRIDLATWVFDKMNRDSVIPDVVTYTVLIDWYHKHGYFDQAHKLYDVMKDKG 806

Query: 288 WKPDPIAFSVLG 299
             PD I  +VLG
Sbjct: 807 VLPDDITHNVLG 818


>gi|224069551|ref|XP_002326371.1| predicted protein [Populus trichocarpa]
 gi|222833564|gb|EEE72041.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 151/316 (47%), Gaps = 7/316 (2%)

Query: 190 YNVTMKSLRFGRQFQLIEQ-LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERM 248
           Y V + +L FG    L    L NEM     E +  TY+ ++    +    DE+      M
Sbjct: 322 YTVIIHAL-FGNDRNLEGMDLFNEMRERSCEPNVHTYTVMVDAMCKERKLDESRRILNEM 380

Query: 249 YKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY 308
            + GL+P  VTY+A++  Y + G++E  L +     ++  +P+   ++ L   F +    
Sbjct: 381 MEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMESNNCRPNERTYNELICGFSKRKHV 440

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
                +L +M    + P+LV YN+L+    KAG    A  L D + E+GL PD+ T +  
Sbjct: 441 HKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQWTYSVF 500

Query: 369 IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428
           I    K++  ++A +L+  ++E     + ++Y  L++     G ++EA  L E M   D 
Sbjct: 501 IDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAISLLERMHSED- 559

Query: 429 CKPDNYSYTAMLNIYG--SGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
           C P++ +Y ++  IYG    G V   + + E MS++GV   V   T LI+ + +    D 
Sbjct: 560 CLPNSSTYNSL--IYGVCKEGKVQEGLSMVENMSKMGVKPTVATYTILIEEMLREGDFDH 617

Query: 487 LVRVFGVSIDRGVKPD 502
             RVF   +  G KPD
Sbjct: 618 ANRVFNQMVSFGHKPD 633



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 105/222 (47%), Gaps = 1/222 (0%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           +  +Y   + +K   L P +   Y+V + +L   ++ +    L N +    I+ + + Y+
Sbjct: 475 FDSAYKLLDLLKENGLVP-DQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYT 533

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
            +I    +    DEAI   ERM+    +P+  TY++++    K GKV+E LS+ E     
Sbjct: 534 ALIDGHCKAGKIDEAISLLERMHSEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVENMSKM 593

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G KP    +++L +     GD+D    V  +M S G +P++  Y   +     +G    A
Sbjct: 594 GVKPTVATYTILIEEMLREGDFDHANRVFNQMVSFGHKPDVYTYTAFIHTYCTSGNVKEA 653

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
             +   M+E+G+ PD  T T LI  Y +   A DA  + +RM
Sbjct: 654 EGMMARMIEAGVMPDSLTYTLLISAYERLGLAYDAFNVLKRM 695



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 130/284 (45%), Gaps = 1/284 (0%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           ++ N M +     + ++Y+TII         DE I  F++M +    P   TY+ I+   
Sbjct: 270 KVFNMMPNKGCRRNEVSYTTIIHGLCEAGRIDEGISLFKKMREDDCYPTVRTYTVIIHAL 329

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
             + +  E + L+        +P+   ++V+     +    D  R +L EM   G+ P++
Sbjct: 330 FGNDRNLEGMDLFNEMRERSCEPNVHTYTVMVDAMCKERKLDESRRILNEMMEKGLVPSV 389

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
           V YN L+    + G+   A  +   M  +   P+E+T   LI  + K +    A+ L  +
Sbjct: 390 VTYNALIRGYCEEGRIEAALEILGLMESNNCRPNERTYNELICGFSKRKHVHKAMTLLSK 449

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           M E+K     + YN+L+++    G  + A +L + +K  +   PD ++Y+  ++      
Sbjct: 450 MLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLK-ENGLVPDQWTYSVFIDTLCKSK 508

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
            ++ A +LF  + E G+  N +  T LI    KA +ID+ + + 
Sbjct: 509 RMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAISLL 552



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 73/313 (23%), Positives = 140/313 (44%), Gaps = 1/313 (0%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           Y V + ++   R+     ++ NEM+   +    +TY+ +I         + A+E    M 
Sbjct: 357 YTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLME 416

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
                P+E TY+ ++  ++K   V + ++L  + + S   P  + ++ L  +  ++G +D
Sbjct: 417 SNNCRPNERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFD 476

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               +L  +K  G+ P+   Y+  ++ + K+ +   A  LF+ + E G+  +E   TALI
Sbjct: 477 SAYKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALI 536

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
             + KA    +A+ L ERM       +   YN+L+      G V+E   + E+M      
Sbjct: 537 DGHCKAGKIDEAISLLERMHSEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVENMSKMG-V 595

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
           KP   +YT ++      G+ D+A  +F +M   G   +V   T  I     +  + +   
Sbjct: 596 KPTVATYTILIEEMLREGDFDHANRVFNQMVSFGHKPDVYTYTAFIHTYCTSGNVKEAEG 655

Query: 490 VFGVSIDRGVKPD 502
           +    I+ GV PD
Sbjct: 656 MMARMIEAGVMPD 668



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/348 (21%), Positives = 159/348 (45%), Gaps = 41/348 (11%)

Query: 202 QFQLIEQLA---NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEV 258
           +F +I+++     EM+++ I  +  T +T++    +     EA  +  ++++ GL PD  
Sbjct: 191 RFLMIDEMKRVYTEMLNDMIVPNIYTLNTMVNAYSKMGNIVEANLYVSKIFQAGLSPDSF 250

Query: 259 TYSAILDVYAK-----------------------------------SGKVEEVLSLYERG 283
           TY++++  Y +                                   +G+++E +SL+++ 
Sbjct: 251 TYTSLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHGLCEAGRIDEGISLFKKM 310

Query: 284 VASGWKPDPIAFSV-LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
                 P    ++V +  +FG   + +G+  +  EM+    +PN+  Y  +++AM K  K
Sbjct: 311 REDDCYPTVRTYTVIIHALFGNDRNLEGMD-LFNEMRERSCEPNVHTYTVMVDAMCKERK 369

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
              +R + +EM+E GL P   T  ALI+ Y +    + ALE+   M  N    +   YN 
Sbjct: 370 LDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMESNNCRPNERTYNE 429

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
           L+   +    V +A  L   M L     P   +Y +++++    G+ D+A +L + + E 
Sbjct: 430 LICGFSKRKHVHKAMTLLSKM-LESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKEN 488

Query: 463 GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
           G+  +    +  I  L K++R+++   +F    ++G+K ++ +   L+
Sbjct: 489 GLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALI 536



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 75/359 (20%), Positives = 148/359 (41%), Gaps = 48/359 (13%)

Query: 192 VTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKT 251
           V++  +RF   F  + Q+  +    + +L   +Y+ ++    R  + DE    +  M   
Sbjct: 151 VSVDDIRFLLDF--LRQMNRDDNDIKFKLSVRSYNELLMMLARFLMIDEMKRVYTEMLND 208

Query: 252 GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGI 311
            ++P+  T + +++ Y+K G + E      +   +G  PD   ++ L   +  + D +  
Sbjct: 209 MIVPNIYTLNTMVNAYSKMGNIVEANLYVSKIFQAGLSPDSFTYTSLILGYCRNNDVNSA 268

Query: 312 RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK- 370
             V   M + G + N V Y T++  + +AG+     SLF +M E    P  +T T +I  
Sbjct: 269 YKVFNMMPNKGCRRNEVSYTTIIHGLCEAGRIDEGISLFKKMREDDCYPTVRTYTVIIHA 328

Query: 371 IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCK 430
           ++G  R   + ++L+  MRE                                      C+
Sbjct: 329 LFGNDR-NLEGMDLFNEMRERS------------------------------------CE 351

Query: 431 PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRV 490
           P+ ++YT M++       +D +  +  EM E G+  +V+    LI+   +  RI+  + +
Sbjct: 352 PNVHTYTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEI 411

Query: 491 FGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQA-----NPKLVAFLNLIE 544
            G+      +P++R    L+   S     + V K +T L +       P LV + +LI 
Sbjct: 412 LGLMESNNCRPNERTYNELICGFS---KRKHVHKAMTLLSKMLESKLTPSLVTYNSLIH 467


>gi|6633829|gb|AAF19688.1|AC009519_22 F1N19.15 [Arabidopsis thaliana]
          Length = 1048

 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/343 (24%), Positives = 169/343 (49%), Gaps = 5/343 (1%)

Query: 161 LNSLKFWQKSYFFFNWIKSQNLFPMETIF-YNVTMKSLRFGRQFQLIEQLANEMVSNEIE 219
           L+S++F      FF  + SQ   P+ +I  +   + +    R+++ +   + +M    I 
Sbjct: 47  LHSIRFEDAFALFFEMVHSQ---PLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGIS 103

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
            D  +++ +I C  RC+    A+    +M K G  P  VT+ ++L  +    ++ +  SL
Sbjct: 104 HDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSL 163

Query: 280 YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
               V SG++P+ + ++ L     ++G+ +    +L EM+  G+  ++V YNTLL  +  
Sbjct: 164 VILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCY 223

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
           +G+   A  +  +M++  + PD  T TALI ++ K     +A EL++ M ++    + + 
Sbjct: 224 SGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVT 283

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           YN+++N     G + +A++ F D+  S  C P+  +Y  +++ +     VD  ++LF+ M
Sbjct: 284 YNSIINGLCMHGRLYDAKKTF-DLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRM 342

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           S  G   ++     LI    +  ++   + +F   + R V PD
Sbjct: 343 SCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPD 385



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 86/319 (26%), Positives = 149/319 (46%), Gaps = 9/319 (2%)

Query: 192 VTMKSLRFGRQFQLIEQLANE------MVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           VT  SL  G  F L+ ++ +       MV +  E + + Y+T+I    +    + A+E  
Sbjct: 142 VTFGSLLHG--FCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELL 199

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
             M K GL  D VTY+ +L     SG+  +   +    +     PD + F+ L  +F + 
Sbjct: 200 NEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQ 259

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G+ D  + + +EM    V PN V YN+++  +   G+   A+  FD M   G  P+  T 
Sbjct: 260 GNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTY 319

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
             LI  + K R   + ++L++RM    +  D   YNTL++    +G +  A  +F  M +
Sbjct: 320 NTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWM-V 378

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
           S    PD  ++  +L+     G +++A+  F++M E    I ++    +I  L KA +++
Sbjct: 379 SRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVE 438

Query: 486 DLVRVFGVSIDRGVKPDDR 504
               +F      GVKPD R
Sbjct: 439 KAWELFCRLPVEGVKPDAR 457



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 143/303 (47%), Gaps = 1/303 (0%)

Query: 200 GRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVT 259
           G +FQ    L + M       + + Y+T+I    +    + A+E F  M K G+  D VT
Sbjct: 687 GNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVT 746

Query: 260 YSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMK 319
           Y+ ++   + SG+  +   L    V     P+ I F+ L   F + G+    R + +EM 
Sbjct: 747 YNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMI 806

Query: 320 SLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAK 379
              V PN+  YN+L+      G  G A+ +FD MV  G  PD  T   LI  + K++  +
Sbjct: 807 RRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVE 866

Query: 380 DALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAM 439
           D ++L+  M       D   YNTL++     G +  A+++F  M +     PD  +Y  +
Sbjct: 867 DGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRM-VDCGVSPDIVTYNIL 925

Query: 440 LNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGV 499
           L+   + G ++ A+ + E++ +  + ++++    +IQ L +  ++ +   +F     +GV
Sbjct: 926 LDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGV 985

Query: 500 KPD 502
           KPD
Sbjct: 986 KPD 988



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/370 (23%), Positives = 174/370 (47%), Gaps = 6/370 (1%)

Query: 135 DNTEEAFLRAITEIPHQPT-RENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIF-YNV 192
           +N E +  R+ +   H    RE     L+ +KF      F   ++S+   P+ +I  +  
Sbjct: 553 NNPETSLSRSFSGASHHHHYRERLRNELHCIKFDDAFSLFCEMLQSR---PIPSIVDFTR 609

Query: 193 TMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTG 252
            +  +    +F ++  L ++M +  I  D  +++ +I C  RC+    A+    +M K G
Sbjct: 610 VLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILIHCFCRCSRLSLALALLGKMMKLG 669

Query: 253 LMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIR 312
             P  VT  ++L+ + +  + +E +SL +     G+ P+ + ++ +     ++ D +   
Sbjct: 670 FRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNAL 729

Query: 313 YVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIY 372
            V   M+  G++ + V YNTL+  +  +G+   A  L  +MV+  + P+    TALI  +
Sbjct: 730 EVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTF 789

Query: 373 GKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPD 432
            K     +A  L++ M       +   YN+L+N     G + +A+ +F D+ +S  C PD
Sbjct: 790 VKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMF-DLMVSKGCFPD 848

Query: 433 NYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFG 492
             +Y  ++  +     V++ ++LF EM+  G+  +      LI    +A +++   +VF 
Sbjct: 849 VVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFN 908

Query: 493 VSIDRGVKPD 502
             +D GV PD
Sbjct: 909 RMVDCGVSPD 918



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/307 (27%), Positives = 135/307 (43%), Gaps = 6/307 (1%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
            + YN  +  L    +  +  +L NEM    +  D +TY+T++T       + +A     
Sbjct: 176 VVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLR 235

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAF-SVLGKMFGES 305
            M K  + PD VT++A++DV+ K G ++E   LY+  + S   P+ + + S++  +    
Sbjct: 236 DMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHG 295

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
             YD  +     M S G  PN+V YNTL+    K         LF  M   G   D  T 
Sbjct: 296 RLYDA-KKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTY 354

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
             LI  Y +    + AL+++  M   +   D I +  LL+     G +E A   F+DM+ 
Sbjct: 355 NTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRE 414

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL---GKAR 482
           S+       +Y  M++       V+ A ELF  +   GV  +    T +I  L   G  R
Sbjct: 415 SEK-YIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRR 473

Query: 483 RIDDLVR 489
             D+L+R
Sbjct: 474 EADELIR 480



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 139/326 (42%), Gaps = 7/326 (2%)

Query: 183  FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
            F    + YN  +  L   R      ++   M    I  D +TY+T+I+       + +A 
Sbjct: 705  FVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAA 764

Query: 243  EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
                 M K  + P+ + ++A++D + K G + E  +LY+  +     P+   ++ L   F
Sbjct: 765  RLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGF 824

Query: 303  GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
               G     +Y+   M S G  P++V YNTL+    K+ +      LF EM   GL  D 
Sbjct: 825  CIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDA 884

Query: 363  KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED 422
             T   LI  Y +A     A +++ RM +     D + YN LL+   + G +E+A  + ED
Sbjct: 885  FTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVED 944

Query: 423  MKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL---G 479
            ++ S+    D  +Y  ++        +  A  LF  ++  GV  + +    +I  L   G
Sbjct: 945  LQKSEM-DVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKG 1003

Query: 480  KARRIDDLVRVFGVSIDRGVKPDDRL 505
              R  D L R      + G  P +R+
Sbjct: 1004 LQREADKLCRRMK---EDGFMPSERI 1026



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 80/168 (47%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           +TY+T+I+   +  + DE ++ F+RM   G   D  TY+ ++  Y + GK+   L ++  
Sbjct: 317 VTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCW 376

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
            V+    PD I   +L      +G+ +       +M+       +V YN ++  + KA K
Sbjct: 377 MVSRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKADK 436

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
              A  LF  +   G+ PD +T T +I    K    ++A EL  RM+E
Sbjct: 437 VEKAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELIRRMKE 484



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 59/271 (21%), Positives = 114/271 (42%), Gaps = 36/271 (13%)

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
           +  S + E+  +L+   V S   P  + F+ L         Y+ + Y  Q+M+  G+  +
Sbjct: 46  FLHSIRFEDAFALFFEMVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHD 105

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
           L  +  L+    +  +   A S+  +M++ G  P   T  +L+  +       DA  L  
Sbjct: 106 LYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVI 165

Query: 387 RMRENKWPMDFILYNTLLN-MC---------------------ADI-------------G 411
            M ++ +  + ++YNTL++ +C                     AD+             G
Sbjct: 166 LMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSG 225

Query: 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC 471
              +A R+  DM +     PD  ++TA+++++   GN+D A EL++EM +  V  N +  
Sbjct: 226 RWSDAARMLRDM-MKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTY 284

Query: 472 TCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
             +I  L    R+ D  + F +   +G  P+
Sbjct: 285 NSIINGLCMHGRLYDAKKTFDLMASKGCFPN 315



 Score = 42.0 bits (97), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 86/202 (42%), Gaps = 5/202 (2%)

Query: 346 ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405
           A SLF EM++S   P     T ++ +  K       + L+ +M       D   +  L++
Sbjct: 588 AFSLFCEMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILIH 647

Query: 406 -MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
             C    L      L + MKL    +P   +  ++LN +  G     A+ L + M   G 
Sbjct: 648 CFCRCSRLSLALALLGKMMKLG--FRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGF 705

Query: 465 AINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGK 524
             NV+    +I  L K R +++ + VF     +G++ D      L+S +S      D  +
Sbjct: 706 VPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAAR 765

Query: 525 VITCL--QQANPKLVAFLNLIE 544
           ++  +  ++ +P ++ F  LI+
Sbjct: 766 LLRDMVKRKIDPNVIFFTALID 787


>gi|414864941|tpg|DAA43498.1| TPA: hypothetical protein ZEAMMB73_100357 [Zea mays]
          Length = 788

 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 88/320 (27%), Positives = 151/320 (47%), Gaps = 28/320 (8%)

Query: 159 LILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEI 218
           +IL   K W+++   F+W + +    +  I YNV + ++   R++ L+ +L  EM S  +
Sbjct: 108 IILKEQKDWRRAVEIFDWFRREQGHELNVIHYNVVLNTVGKARRWDLVLRLWYEMHSFGV 167

Query: 219 ELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS 278
             DN TY T+I    +      A+ W   M K GLMPDEVT S ++  + K+G+ E    
Sbjct: 168 APDNSTYGTLINVCCQGGREWTALLWLGDMCKRGLMPDEVTMSIVMQAHKKAGEYETAEI 227

Query: 279 LYERGVASGWKPDPI------------AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
            +ER     W  D I             ++ L   +G++G  + +     +M S GV P+
Sbjct: 228 FFER-----WSSDSIRRMEGRSHYNLYTYNTLIDTYGKAGHLEKVSDTFNQMLSEGVAPS 282

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL-- 384
           +V +N+++ A GK  +     SL   M E    PD +T   LI +Y ++    D +++  
Sbjct: 283 VVTFNSMIHAWGKHHRMEKVASLVRMMEEFQCFPDTRTYNILIALYRES----DDIDIAE 338

Query: 385 ---WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
              W+   EN  P D +   TLL   +  G+V +AE L ++M    +   D Y+ +A+  
Sbjct: 339 YYYWKMKTENLVP-DVVSCRTLLYGYSIRGMVTKAEALLKEMDERGF-MVDEYTQSALTR 396

Query: 442 IYGSGGNVDNAIELFEEMSE 461
           +Y + G ++ A   F+    
Sbjct: 397 MYVNVGMLEQAWRWFDRFHH 416



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 69/272 (25%), Positives = 136/272 (50%), Gaps = 12/272 (4%)

Query: 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS 296
           + DEA E    M +  ++PD VTY++++ + + +   ++ +   E+        D I +S
Sbjct: 469 MLDEACEIANGMERYDILPDYVTYTSLIQLLSTAKLPKKAIYYLEKMKVVKLLSDCIPYS 528

Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356
           V+   F ++GD     Y+ +EM   GV+P++ VY+ L++A  + G    A + F  M + 
Sbjct: 529 VVISSFAKNGDLRMSEYLFREMIMSGVRPDIFVYSILIDAYAEVGNVQQASAYFGLMKKD 588

Query: 357 GLTPDEKTLTALIKIYGKARW---AKDALELWERMRENKWPMDFILY--NTLLNMCADIG 411
           GL  +     +LIK+Y K  +   A+ A +L + +  N      ILY  N ++++ +D  
Sbjct: 589 GLYENVTIYNSLIKLYTKVGYVPEARGAYKLLKSLDTNA-----ILYASNCMIDLYSDHC 643

Query: 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC 471
           +V+EA  +F+ +K+      + +S+  M+ +Y   G  D A  + +EM  LG+   ++  
Sbjct: 644 MVKEACEVFDSLKVRGI--ANEFSHAMMVCMYKKVGRYDVAHRVCKEMQALGLLTQLLSY 701

Query: 472 TCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
             +IQ      R ++ +++F   +     P+D
Sbjct: 702 NSVIQMYVSGGRTEEALKIFKKMLASNTPPND 733



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 132/304 (43%), Gaps = 16/304 (5%)

Query: 183 FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
           FP +T  YN+ +   R      + E    +M +  +  D ++  T++       +  +A 
Sbjct: 315 FP-DTRTYNILIALYRESDDIDIAEYYYWKMKTENLVPDVVSCRTLLYGYSIRGMVTKAE 373

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
              + M + G M DE T SA+  +Y   G +E+    ++R        +   FS     F
Sbjct: 374 ALLKEMDERGFMVDEYTQSALTRMYVNVGMLEQAWRWFDR---FHHHMNSECFSANIDAF 430

Query: 303 GESGDYDGIRYVLQEMKSLGV-----QPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
           GE G      Y++   K+          ++   N +++A G  G    A  + + M    
Sbjct: 431 GEKG------YIVLAEKAFVCCLKKKMISVSACNVMIKAYGLVGMLDEACEIANGMERYD 484

Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417
           + PD  T T+LI++   A+  K A+   E+M+  K   D I Y+ +++  A  G +  +E
Sbjct: 485 ILPDYVTYTSLIQLLSTAKLPKKAIYYLEKMKVVKLLSDCIPYSVVISSFAKNGDLRMSE 544

Query: 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
            LF +M +S   +PD + Y+ +++ Y   GNV  A   F  M + G+  NV     LI+ 
Sbjct: 545 YLFREMIMSG-VRPDIFVYSILIDAYAEVGNVQQASAYFGLMKKDGLYENVTIYNSLIKL 603

Query: 478 LGKA 481
             K 
Sbjct: 604 YTKV 607



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 61/283 (21%), Positives = 117/283 (41%), Gaps = 45/283 (15%)

Query: 148 IPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIE 207
           +P   T  + + +L++ K  +K+ ++   +K   L   + I Y+V + S       ++ E
Sbjct: 486 LPDYVTYTSLIQLLSTAKLPKKAIYYLEKMKVVKLLS-DCIPYSVVISSFAKNGDLRMSE 544

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
            L  EM+ + +  D   YS +I          +A  +F  M K GL  +   Y++++ +Y
Sbjct: 545 YLFREMIMSGVRPDIFVYSILIDAYAEVGNVQQASAYFGLMKKDGLYENVTIYNSLIKLY 604

Query: 268 AKSGKVEEVLSLYE---------------------------------------RGVASGW 288
            K G V E    Y+                                       RG+A   
Sbjct: 605 TKVGYVPEARGAYKLLKSLDTNAILYASNCMIDLYSDHCMVKEACEVFDSLKVRGIA--- 661

Query: 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348
             +  + +++  M+ + G YD    V +EM++LG+   L+ YN++++     G+   A  
Sbjct: 662 --NEFSHAMMVCMYKKVGRYDVAHRVCKEMQALGLLTQLLSYNSVIQMYVSGGRTEEALK 719

Query: 349 LFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN 391
           +F +M+ S   P++ T  AL  I  ++   K+     E +R N
Sbjct: 720 IFKKMLASNTPPNDATFQALKVILVRSGVTKNETRKLELLRRN 762



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 106/248 (42%), Gaps = 34/248 (13%)

Query: 275 EVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLL 334
           E+   + R    G + + I ++V+    G++  +D +  +  EM S GV P+   Y TL+
Sbjct: 121 EIFDWFRR--EQGHELNVIHYNVVLNTVGKARRWDLVLRLWYEMHSFGVAPDNSTYGTLI 178

Query: 335 EAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWP 394
               + G+   A     +M + GL PDE T++ +++ + KA   + A   +ER     W 
Sbjct: 179 NVCCQGGREWTALLWLGDMCKRGLMPDEVTMSIVMQAHKKAGEYETAEIFFER-----WS 233

Query: 395 MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIE 454
            D I                         ++      + Y+Y  +++ YG  G+++   +
Sbjct: 234 SDSI------------------------RRMEGRSHYNLYTYNTLIDTYGKAGHLEKVSD 269

Query: 455 LFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVS 514
            F +M   GVA +V+    +I   GK  R++ +  +  +  +    PD R    L   ++
Sbjct: 270 TFNQMLSEGVAPSVVTFNSMIHAWGKHHRMEKVASLVRMMEEFQCFPDTRTYNIL---IA 326

Query: 515 LCETSEDV 522
           L   S+D+
Sbjct: 327 LYRESDDI 334


>gi|297738031|emb|CBI27232.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 87/348 (25%), Positives = 170/348 (48%), Gaps = 6/348 (1%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           ++    + ++ +  FP  ++ +NV +  L        + +L + M       + +TY+TI
Sbjct: 241 EAVLLLDEMQIEGCFP-SSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTI 299

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
           I         D+A+   +RM  +  +P++VTY  +++   K G+  + + L       G 
Sbjct: 300 INGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGH 359

Query: 289 KPDPIAFSVL-GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
             +  A+S L   +F E    + +  + ++M   G QPN+VVY+ L++ + + GK   A+
Sbjct: 360 HANEYAYSTLISGLFKEEKSEEAMG-LWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAK 418

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
            +  EMV  G TP+  T ++LIK + K   ++ A+ +W+ M +N    + I Y+ L++  
Sbjct: 419 EILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGL 478

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM--SELGVA 465
            + G + EA  ++  M L    +PD  +Y++M++   + G+V+  ++LF EM   E    
Sbjct: 479 CEDGKLREAMMMWTHM-LGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQ 537

Query: 466 INVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVV 513
            +V+    L++ L K   I   + +    +DRG  PD   C   L+ +
Sbjct: 538 PDVVTYNILLRALCKQNSISHAIDLLNSMLDRGCNPDLITCNIFLNAL 585



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/314 (23%), Positives = 152/314 (48%), Gaps = 3/314 (0%)

Query: 190 YNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERM 248
           +N+ +K++ + G   + IE +  EM   + E D  TY T++    + +  DEA+   + M
Sbjct: 191 FNLVIKAMCKLGLVDRAIE-VFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEM 249

Query: 249 YKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY 308
              G  P  VT++ +++   K G +  V  L +     G  P+ + ++ +       G  
Sbjct: 250 QIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKL 309

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
           D    +L  M +    PN V Y TL+  + K G+      L   + E G   +E   + L
Sbjct: 310 DKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTL 369

Query: 369 IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428
           I    K   +++A+ LW++M E     + ++Y+ L++     G ++EA+ +  +M ++  
Sbjct: 370 ISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEM-VNKG 428

Query: 429 CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLV 488
           C P+ ++Y++++  +   GN   AI +++EM++     N +  + LI  L +  ++ + +
Sbjct: 429 CTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAM 488

Query: 489 RVFGVSIDRGVKPD 502
            ++   + RG++PD
Sbjct: 489 MMWTHMLGRGLRPD 502



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 58/281 (20%), Positives = 124/281 (44%), Gaps = 3/281 (1%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMY--KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYE 281
           ++++++    +  LF  A+E++E     KT + P+ ++++ ++    K G V+  + ++ 
Sbjct: 153 SFNSVLNVIIQEGLFHRALEFYECGVGGKTNISPNVLSFNLVIKAMCKLGLVDRAIEVFR 212

Query: 282 RGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG 341
                  +PD   +  L     +    D    +L EM+  G  P+ V +N L+  + K G
Sbjct: 213 EMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKG 272

Query: 342 KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYN 401
                  L D M   G  P+E T   +I           A+ L +RM  +K   + + Y 
Sbjct: 273 DMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYG 332

Query: 402 TLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461
           TL+N     G   +   L   ++   +   + Y+Y+ +++        + A+ L+++M E
Sbjct: 333 TLINGLVKQGRSVDGVHLLSSLEERGH-HANEYAYSTLISGLFKEEKSEEAMGLWKKMVE 391

Query: 462 LGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            G   N++  + LI  L +  ++D+   +    +++G  P+
Sbjct: 392 KGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPN 432



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 85/385 (22%), Positives = 152/385 (39%), Gaps = 53/385 (13%)

Query: 144 AITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPM-ETIFYNVT---MKSLRF 199
           +I+E P  P R    ++  S  F Q   + F        +   ++ FY++      S  F
Sbjct: 43  SISECP--PRR----VVSVSRSFLQSETYIFKSASQMGSYKSGDSTFYSLIENYANSGDF 96

Query: 200 GRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEV- 258
           G  FQ+ +++  E     + ++   +  +     + +L ++AIE F RM         V 
Sbjct: 97  GTLFQVFDRMKRE---RRVFIEK-NFILVFRAYGKAHLPEKAIELFGRMVDEFQCRRTVR 152

Query: 259 TYSAILDVYAKSGKVEEVLSLYERGVA--SGWKPDPIAFSVLGKMFGESGDYDGIRYVLQ 316
           +++++L+V  + G     L  YE GV   +   P+ ++F+++ K   + G  D    V +
Sbjct: 153 SFNSVLNVIIQEGLFHRALEFYECGVGGKTNISPNVLSFNLVIKAMCKLGLVDRAIEVFR 212

Query: 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
           EM     +P++  Y TL++ + K  +   A  L DEM   G  P   T            
Sbjct: 213 EMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVT------------ 260

Query: 377 WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY 436
                                  +N L+N     G +    +L ++M L   C P+  +Y
Sbjct: 261 -----------------------FNVLINGLCKKGDMVRVTKLVDNMFLKG-CVPNEVTY 296

Query: 437 TAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496
             ++N     G +D A+ L + M       N +    LI  L K  R  D V +     +
Sbjct: 297 NTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEE 356

Query: 497 RGVKPDDRLCGCLLSVVSLCETSED 521
           RG   ++     L+S +   E SE+
Sbjct: 357 RGHHANEYAYSTLISGLFKEEKSEE 381



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 62/146 (42%), Gaps = 3/146 (2%)

Query: 212 EMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG 271
           EM  N    + I YS +I          EA+  +  M   GL PD V YS+++     +G
Sbjct: 458 EMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAG 517

Query: 272 KVEEVLSLYERGVA--SGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVV 329
            VE  L L+   +   S  +PD + +++L +   +         +L  M   G  P+L+ 
Sbjct: 518 SVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDRGCNPDLIT 577

Query: 330 YNTLLEAM-GKAGKPGLARSLFDEMV 354
            N  L A+  K   P   R   DE+V
Sbjct: 578 CNIFLNALREKLNPPQDGREFLDELV 603


>gi|224134148|ref|XP_002321748.1| predicted protein [Populus trichocarpa]
 gi|222868744|gb|EEF05875.1| predicted protein [Populus trichocarpa]
          Length = 1041

 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 99/364 (27%), Positives = 170/364 (46%), Gaps = 9/364 (2%)

Query: 158 LLILNSLK-FWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSN 216
           LL  N L+ FW+    F+N +   N+      + ++     R G   +  ++L  EM   
Sbjct: 211 LLKANKLELFWR----FYNGMLEANVLHDVYTYTHLINAHFRAGNAKE-GKRLLFEMEEK 265

Query: 217 EIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV 276
                 +TY+ +I    R    DEA E  + M K GL+ D  TYS ++D + K  +  E 
Sbjct: 266 GCSPSLVTYNVVIGGLCRAGEVDEAFELKKLMDKKGLVADVFTYSILIDGFGKQKRCTEA 325

Query: 277 LSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA 336
             + E   + G KP  +A++ L   F   GD      V +EM + GV+ NL  YN L++ 
Sbjct: 326 KLMLEEMFSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKG 385

Query: 337 MGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMD 396
           + K G    A +L +EM+  G+ PD +T   +I+ Y K +      +L   M+++     
Sbjct: 386 VCKFGDMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPT 445

Query: 397 FILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELF 456
                 ++N     G +E+A R+FE M +S   KP+   YT ++  +   G    A+ + 
Sbjct: 446 AYTCGMIINGLCRHGSIEDASRVFEIM-VSLGVKPNAVIYTTLIKGHVQEGRFQEAVRIL 504

Query: 457 EEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLC 516
           + M + GV  +V+    +I  L K+R++++        I+RG+KP+    G L+     C
Sbjct: 505 KVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIH--GYC 562

Query: 517 ETSE 520
           ++ E
Sbjct: 563 KSGE 566



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 148/317 (46%), Gaps = 2/317 (0%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + YN  +  L   R+ +  +    EM+   ++ +  TY  +I    +      A  +F
Sbjct: 515 DVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYF 574

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           + M   G+ P++V  +A++D Y K G   E  S++   +     PD   +S L      +
Sbjct: 575 KEMLGCGIAPNDVVCTALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRN 634

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G   G   +L E    G+ P++  YN+++    K G  G A  L + M + G++P+  T 
Sbjct: 635 GKLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITY 694

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
            ALI    KA   + A EL++ +       + + Y T+++     G + +A RLF++M L
Sbjct: 695 NALINGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTL 754

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
                PD++ Y+A+++     GN + A+ LF E  + G A +      L+    K+ ++ 
Sbjct: 755 KG-VPPDSFVYSALIDGCRKEGNTEKALSLFLESVQKGFA-STSSLNALMDGFCKSGKVI 812

Query: 486 DLVRVFGVSIDRGVKPD 502
           +  ++    +D+ VKPD
Sbjct: 813 EANQLLEDMVDKHVKPD 829



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 99/418 (23%), Positives = 177/418 (42%), Gaps = 21/418 (5%)

Query: 152 PTRENALLILNSL---KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           PT     +I+N L      + +   F  + S  + P   I+  +    ++ GR FQ   +
Sbjct: 444 PTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGR-FQEAVR 502

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           +   M    ++ D + Y+++I    +    +EA ++   M + GL P+  TY A++  Y 
Sbjct: 503 ILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYC 562

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           KSG+++     ++  +  G  P+ +  + L   + + G       + + M    V P++ 
Sbjct: 563 KSGEMQVADRYFKEMLGCGIAPNDVVCTALIDGYCKEGSTTEATSIFRCMLGRSVHPDVR 622

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            Y+ L+  + + GK   A  L  E +E GL PD  T  ++I  + K      A +L E M
Sbjct: 623 TYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQLHEYM 682

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
            +     + I YN L+N     G +E A  LF+ +        +  +Y  +++ Y   GN
Sbjct: 683 CQKGISPNIITYNALINGLCKAGEIERARELFDGIP-GKGLAHNAVTYATIIDGYCKSGN 741

Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGC 508
           +  A  LF+EM+  GV  +    + LI    K    +  + +F  S+ +G      L   
Sbjct: 742 LSKAFRLFDEMTLKGVPPDSFVYSALIDGCRKEGNTEKALSLFLESVQKGFASTSSLNAL 801

Query: 509 LLSVVSLCETSEDVGKVITCLQ--------QANPKLVAFLNLIEDN-STGFENIKEEF 557
           +      C++    GKVI   Q           P  V +  LI+ +  TGF    E+F
Sbjct: 802 M---DGFCKS----GKVIEANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQF 852



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 87/359 (24%), Positives = 154/359 (42%), Gaps = 41/359 (11%)

Query: 200  GRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVT 259
            G+ FQL E +  + +S  I    ITY+ +I    +    + A E F+ +   GL  + VT
Sbjct: 673  GKAFQLHEYMCQKGISPNI----ITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVT 728

Query: 260  YSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMK 319
            Y+ I+D Y KSG + +   L++     G  PD   +S L     + G+ +    +  E  
Sbjct: 729  YATIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALIDGCRKEGNTEKALSLFLESV 788

Query: 320  SLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAK 379
              G      + N L++   K+GK   A  L ++MV+  + PD  T T LI  + K  + K
Sbjct: 789  QKGFASTSSL-NALMDGFCKSGKVIEANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLK 847

Query: 380  DALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAM 439
            +A + +  M++     + + Y  LL+     G   E   LF++M   D  +PD  +++ M
Sbjct: 848  EAEQFFVDMQKRNLMPNALTYTALLSGYNMAGRRSEMFALFDEMIAKDI-EPDGVTWSVM 906

Query: 440  LNIY-----------------GSGGNVDN------------------AIELFEEMSELGV 464
            ++ +                   GGNV                     +++ E++ E G+
Sbjct: 907  IDAHLKEGDHVKTLKLVDDMLKKGGNVSKNVCHVLIDPLCRKEHVSEVLKVLEKIEEQGL 966

Query: 465  AINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVG 523
             +++  C+ L++C  KA ++D   RV    +     PD      L++V      SE+ G
Sbjct: 967  NLSLATCSTLVRCFHKAGKMDGAARVLKSMVRFKWVPDSTELNDLINVEQDSTDSENAG 1025



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 89/395 (22%), Positives = 154/395 (38%), Gaps = 66/395 (16%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVS------NEI-------- 218
           FFNW++ Q  F  +   +++    L   R F   + + N+M+       +EI        
Sbjct: 87  FFNWVQFQMGFSQKLQSFSILALILCNSRLFSRADSVVNQMIMMSSGGYSEILDSLIKSC 146

Query: 219 -ELD---------------NITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSA 262
            E D                + +  +I   K+  LFDEA+ +F    + G +   +  + 
Sbjct: 147 KEFDLNNVNGNENSNNNDRGVVFELLIDGYKKKGLFDEAVSFFLGAKRNGFVVGLLCCNG 206

Query: 263 ILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG 322
           +L    K+ K+E     Y   + +    D   ++ L      +G+    + +L EM+  G
Sbjct: 207 LLSDLLKANKLELFWRFYNGMLEANVLHDVYTYTHLINAHFRAGNAKEGKRLLFEMEEKG 266

Query: 323 VQPNLVVYNTLLEAMGKAG-------------KPGL----------------------AR 347
             P+LV YN ++  + +AG             K GL                      A+
Sbjct: 267 CSPSLVTYNVVIGGLCRAGEVDEAFELKKLMDKKGLVADVFTYSILIDGFGKQKRCTEAK 326

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
            + +EM   GL P     TALI  + +   + +A  + E M      ++   YN L+   
Sbjct: 327 LMLEEMFSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGV 386

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
              G +E+A+ L  +M +    KPD  +Y  M+  Y    N     +L  EM +  +   
Sbjct: 387 CKFGDMEKADALLNEMIMVGI-KPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPT 445

Query: 468 VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
              C  +I  L +   I+D  RVF + +  GVKP+
Sbjct: 446 AYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPN 480



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 90/411 (21%), Positives = 172/411 (41%), Gaps = 16/411 (3%)

Query: 200 GRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVT 259
           G  F++ E    EM++  ++L+  TY+ ++    +    ++A      M   G+ PD  T
Sbjct: 358 GEAFRVKE----EMLARGVKLNLFTYNALVKGVCKFGDMEKADALLNEMIMVGIKPDTQT 413

Query: 260 YSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMK 319
           Y+ +++ Y K      V  L      S   P      ++       G  +    V + M 
Sbjct: 414 YNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCGMIINGLCRHGSIEDASRVFEIMV 473

Query: 320 SLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAK 379
           SLGV+PN V+Y TL++   + G+   A  +   M + G+ PD     ++I    K+R  +
Sbjct: 474 SLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRKME 533

Query: 380 DALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAM 439
           +A +    M E     +   Y  L++     G ++ A+R F++M L     P++   TA+
Sbjct: 534 EAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEM-LGCGIAPNDVVCTAL 592

Query: 440 LNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGV 499
           ++ Y   G+   A  +F  M    V  +V   + LI  L +  ++   + +    +++G+
Sbjct: 593 IDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGL 652

Query: 500 KPDDRLCGCLLSVVSLCETSEDVGKVI-----TCLQQANPKLVAFLNLIED--NSTGFEN 552
            PD      ++S    C+    +GK        C +  +P ++ +  LI     +   E 
Sbjct: 653 VPDVFTYNSIIS--GFCKQG-GIGKAFQLHEYMCQKGISPNIITYNALINGLCKAGEIER 709

Query: 553 IKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYP 603
            +E F  +           +   +   C++ NL+ +A  L    TL G+ P
Sbjct: 710 ARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLS-KAFRLFDEMTLKGVPP 759



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 111/234 (47%), Gaps = 2/234 (0%)

Query: 199  FGRQFQLIE--QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPD 256
            F +  ++IE  QL  +MV   ++ D++TY+ +I    +     EA ++F  M K  LMP+
Sbjct: 805  FCKSGKVIEANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPN 864

Query: 257  EVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQ 316
             +TY+A+L  Y  +G+  E+ +L++  +A   +PD + +SV+     + GD+     ++ 
Sbjct: 865  ALTYTALLSGYNMAGRRSEMFALFDEMIAKDIEPDGVTWSVMIDAHLKEGDHVKTLKLVD 924

Query: 317  EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
            +M   G   +  V + L++ + +         + +++ E GL     T + L++ + KA 
Sbjct: 925  DMLKKGGNVSKNVCHVLIDPLCRKEHVSEVLKVLEKIEEQGLNLSLATCSTLVRCFHKAG 984

Query: 377  WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCK 430
                A  + + M   KW  D    N L+N+  D    E A    + M     C+
Sbjct: 985  KMDGAARVLKSMVRFKWVPDSTELNDLINVEQDSTDSENAGDFLKQMAWEVACQ 1038



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/221 (19%), Positives = 99/221 (44%), Gaps = 1/221 (0%)

Query: 240  EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
            EA +  E M    + PD VTY+ ++D + K+G ++E    +         P+ + ++ L 
Sbjct: 813  EANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNALTYTALL 872

Query: 300  KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
              +  +G    +  +  EM +  ++P+ V ++ +++A  K G       L D+M++ G  
Sbjct: 873  SGYNMAGRRSEMFALFDEMIAKDIEPDGVTWSVMIDAHLKEGDHVKTLKLVDDMLKKGGN 932

Query: 360  PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
              +     LI    +     + L++ E++ E    +     +TL+      G ++ A R+
Sbjct: 933  VSKNVCHVLIDPLCRKEHVSEVLKVLEKIEEQGLNLSLATCSTLVRCFHKAGKMDGAARV 992

Query: 420  FEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
             + M    +  PD+     ++N+     + +NA +  ++M+
Sbjct: 993  LKSMVRFKWV-PDSTELNDLINVEQDSTDSENAGDFLKQMA 1032


>gi|449515696|ref|XP_004164884.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Cucumis sativus]
          Length = 657

 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 100/399 (25%), Positives = 189/399 (47%), Gaps = 16/399 (4%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           WQ ++  FN      L  + T  +N  +  L    +      L +E+++  I  + ++Y+
Sbjct: 231 WQNAFTMFNDALESGLANVFT--FNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYN 288

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
            II    R +  + A + ++ M   G  P+ VT++ ++D Y K G +E   S++ R   +
Sbjct: 289 NIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHRMKDA 348

Query: 287 GWKPDPIAFSVLGKMFGESG-DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGL 345
              P      ++ K   ++G  ++G R +  +  S G  P  + YNT+++   K G   L
Sbjct: 349 NILPTDTTLGIIIKGLCKAGRSFEG-RDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINL 407

Query: 346 ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405
           A +++ EM E G+TP   T T+LI  + K      AL+L   M+     MD   Y TL++
Sbjct: 408 ASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLID 467

Query: 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
                  ++ A  L  +++ +    P+ + Y +M+  + +  NV+ AI+L+++M   G+ 
Sbjct: 468 GFCKRRDMKSAHELLNELRGAGL-SPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIP 526

Query: 466 INVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETS--EDVG 523
            ++   T LI  L K+ R+     +    + +G+ PDDR    L++   LC     E+  
Sbjct: 527 CDLKTYTSLIDGLLKSGRLLYASDIHTEMLSKGILPDDRAHTVLIN--GLCNKGQFENAR 584

Query: 524 KVITCLQQAN--PKLVAFLNLIEDNSTGFE--NIKEEFR 558
           K++  +   N  P ++ +  LI  +   F+  N++E FR
Sbjct: 585 KILEDMNGKNMIPSVLIYNTLIAGH---FKEGNLQEAFR 620



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 141/326 (43%), Gaps = 34/326 (10%)

Query: 212 EMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG 271
           EM+ N    + +T++ ++    +    + A   F RM    ++P + T   I+    K+G
Sbjct: 309 EMLDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGIIIKGLCKAG 368

Query: 272 KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYN 331
           +  E   L+ + V+ G+ P  + ++ +   F + G+ +    V +EM  +G+ P+ V Y 
Sbjct: 369 RSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYT 428

Query: 332 TLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN 391
           +L++   K     LA  L ++M   GL  D K    LI  + K R  K A EL   +R  
Sbjct: 429 SLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGA 488

Query: 392 KWPMDFILYNTLLNMCADIGLVEEAERLFEDM---------------------------- 423
               +  +YN+++    ++  VEEA  L++ M                            
Sbjct: 489 GLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYA 548

Query: 424 ------KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
                  LS    PD+ ++T ++N   + G  +NA ++ E+M+   +  +V+    LI  
Sbjct: 549 SDIHTEMLSKGILPDDRAHTVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAG 608

Query: 478 LGKARRIDDLVRVFGVSIDRGVKPDD 503
             K   + +  R+    +DRG+ PD+
Sbjct: 609 HFKEGNLQEAFRLHDEMLDRGLVPDN 634



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 94/182 (51%), Gaps = 2/182 (1%)

Query: 201 RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTY 260
           R  +   +L NE+    +  +   Y+++IT  K  N  +EAI+ +++M   G+  D  TY
Sbjct: 473 RDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTY 532

Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
           ++++D   KSG++     ++   ++ G  PD  A +VL       G ++  R +L++M  
Sbjct: 533 TSLIDGLLKSGRLLYASDIHTEMLSKGILPDDRAHTVLINGLCNKGQFENARKILEDMNG 592

Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI--KIYGKARWA 378
             + P++++YNTL+    K G    A  L DEM++ GL PD  T   L+  K  G   ++
Sbjct: 593 KNMIPSVLIYNTLIAGHFKEGNLQEAFRLHDEMLDRGLVPDNITYDILVNGKFKGDGNFS 652

Query: 379 KD 380
           +D
Sbjct: 653 RD 654



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 72/309 (23%), Positives = 129/309 (41%), Gaps = 37/309 (11%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           + ++  F+ +K  N+ P +T    +     + GR F+    L N+ VS       + Y+T
Sbjct: 336 ENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEG-RDLFNKFVSQGFVPTCMPYNT 394

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           II    +    + A   +  M + G+ P  VTY++++D + K   ++  L L       G
Sbjct: 395 IIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKG 454

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNT--------------- 332
            K D  A+  L   F +  D      +L E++  G+ PN  +YN+               
Sbjct: 455 LKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEAI 514

Query: 333 --------------------LLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIY 372
                               L++ + K+G+   A  +  EM+  G+ PD++  T LI   
Sbjct: 515 DLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDIHTEMLSKGILPDDRAHTVLINGL 574

Query: 373 GKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPD 432
                 ++A ++ E M         ++YNTL+      G ++EA RL ++M L     PD
Sbjct: 575 CNKGQFENARKILEDMNGKNMIPSVLIYNTLIAGHFKEGNLQEAFRLHDEM-LDRGLVPD 633

Query: 433 NYSYTAMLN 441
           N +Y  ++N
Sbjct: 634 NITYDILVN 642



 Score = 75.9 bits (185), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 71/304 (23%), Positives = 136/304 (44%), Gaps = 8/304 (2%)

Query: 218 IELDNITYSTIIT--CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEE 275
           +ELD   YS  +   C K  + +  A+     M   G +P E T+++++    K G V E
Sbjct: 71  VELDQEAYSIFVHLLCLKPNSGY--ALSLLREMRAAGWIPPEGTFTSVITACVKEGNVAE 128

Query: 276 VLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLE 335
            L L +  V  G   +    + L K +   G+      ++ E+   G+ PN V Y+ L++
Sbjct: 129 ALRLKDDMVNCGKSMNLAVATSLMKGYCMQGNLRSALVLVNEISESGLVPNKVTYSVLID 188

Query: 336 AMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPM 395
              K G    A   + EM   G+     +L ++++ Y K +  ++A  ++    E+    
Sbjct: 189 GCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSILEGYLKCQSWQNAFTMFNDALESGLAN 248

Query: 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIEL 455
            F  +NTLL+     G + EA  L++++ ++    P+  SY  ++  +    N++ A ++
Sbjct: 249 VFT-FNTLLSWLCKEGKMNEACNLWDEV-IAKGISPNVVSYNNIILGHCRKDNINAACKV 306

Query: 456 FEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSL 515
           ++EM + G   N +  T L+    K   I++   +F    D  + P D   G ++    L
Sbjct: 307 YKEMLDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGIIIK--GL 364

Query: 516 CETS 519
           C+  
Sbjct: 365 CKAG 368



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 125/277 (45%), Gaps = 2/277 (0%)

Query: 226 STIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVA 285
           + ++T   R N+  EA E   +M   G+  D  T   +L    K G + E    + +  A
Sbjct: 9   NILLTAMVRKNMTCEARELHNKMLLVGVTGDCFTLHVMLRACLKEGNILEAEQHFLQAKA 68

Query: 286 SGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGL 345
            G + D  A+S+   +     +      +L+EM++ G  P    + +++ A  K G    
Sbjct: 69  RGVELDQEAYSIFVHLLCLKPNSGYALSLLREMRAAGWIPPEGTFTSVITACVKEGNVAE 128

Query: 346 ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405
           A  L D+MV  G + +    T+L+K Y      + AL L   + E+    + + Y+ L++
Sbjct: 129 ALRLKDDMVNCGKSMNLAVATSLMKGYCMQGNLRSALVLVNEISESGLVPNKVTYSVLID 188

Query: 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
            C   G +E+A   + +MK +   +   YS  ++L  Y    +  NA  +F +  E G+A
Sbjct: 189 GCCKNGNIEKAFEFYSEMK-TKGIRSSVYSLNSILEGYLKCQSWQNAFTMFNDALESGLA 247

Query: 466 INVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            NV     L+  L K  ++++   ++   I +G+ P+
Sbjct: 248 -NVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGISPN 283


>gi|302794005|ref|XP_002978767.1| hypothetical protein SELMODRAFT_109632 [Selaginella moellendorffii]
 gi|300153576|gb|EFJ20214.1| hypothetical protein SELMODRAFT_109632 [Selaginella moellendorffii]
          Length = 521

 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 136/293 (46%), Gaps = 3/293 (1%)

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
           EW   +  T   PD   Y+ ++D Y KS  +E+    + R   +   P+   F VL   +
Sbjct: 92  EWV--LQGTAFRPDLGCYNLLIDAYGKSLNIEDAEKTFNRMQEALCVPNEETFGVLINGY 149

Query: 303 GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
             +G ++    +  +M+  G  P  +  NT L  +  A +   A +LF ++ +    P+ 
Sbjct: 150 RLAGSFEKAEELFVQMQKRGYSPGPLACNTFLHVLEDAKEYRRAEALFRDLEKYECEPNI 209

Query: 363 KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED 422
            T   +I IYGKA     A  L+  MR    P +   +  L+N  A  GL  EAER F+ 
Sbjct: 210 DTYNRMIVIYGKAGEPSKAEMLYRSMRRAMCPPNICTFTALMNAFARQGLYREAERYFDK 269

Query: 423 MKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKAR 482
           ++  DY KPD+Y+Y A++  Y  GG+   A+E+F+ M   G   + +    LI   G+A 
Sbjct: 270 LQEFDY-KPDHYAYNALMEAYSQGGSPAGALEIFQTMQRNGCFPDTVSHNILINAYGRAG 328

Query: 483 RIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPK 535
             +D  ++F      G  P+ +    LLS  +     E+  ++++ +++   K
Sbjct: 329 LYEDAEKIFKSMQSAGFSPNLKSNMLLLSAYARAGRVEEAEELVSAMERDGTK 381



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 72/325 (22%), Positives = 154/325 (47%), Gaps = 6/325 (1%)

Query: 225 YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
           Y+ +I    +    ++A + F RM +   +P+E T+  +++ Y  +G  E+   L+ +  
Sbjct: 107 YNLLIDAYGKSLNIEDAEKTFNRMQEALCVPNEETFGVLINGYRLAGSFEKAEELFVQMQ 166

Query: 285 ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344
             G+ P P+A +    +  ++ +Y     + ++++    +PN+  YN ++   GKAG+P 
Sbjct: 167 KRGYSPGPLACNTFLHVLEDAKEYRRAEALFRDLEKYECEPNIDTYNRMIVIYGKAGEPS 226

Query: 345 LARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
            A  L+  M  +   P+  T TAL+  + +    ++A   +++++E  +  D   YN L+
Sbjct: 227 KAEMLYRSMRRAMCPPNICTFTALMNAFARQGLYREAERYFDKLQEFDYKPDHYAYNALM 286

Query: 405 NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
              +  G    A  +F+ M+ +  C PD  S+  ++N YG  G  ++A ++F+ M   G 
Sbjct: 287 EAYSQGGSPAGALEIFQTMQRNG-CFPDTVSHNILINAYGRAGLYEDAEKIFKSMQSAGF 345

Query: 465 AINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGK 524
           + N+     L+    +A R+++   +       G KPD  +   L++   +    ED+  
Sbjct: 346 SPNLKSNMLLLSAYARAGRVEEAEELVSAMERDGTKPDTLIYNALINAYGVSGRHEDMEA 405

Query: 525 VITCL-----QQANPKLVAFLNLIE 544
           ++  +     +Q  P +  +  LI+
Sbjct: 406 LLAKMVKSSSKQTKPDIGTYNTLIQ 430



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 94/409 (22%), Positives = 181/409 (44%), Gaps = 8/409 (1%)

Query: 127 FARKLNDCDNTEEAFLRAITEIPHQPTRENALLILNSLKF---WQKSYFFFNWIKSQNLF 183
           + + LN  ++ E+ F R + E    P  E   +++N  +    ++K+   F  ++ +   
Sbjct: 114 YGKSLN-IEDAEKTFNR-MQEALCVPNEETFGVLINGYRLAGSFEKAEELFVQMQKRGYS 171

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           P   +  N  +  L   ++++  E L  ++   E E +  TY+ +I    +     +A  
Sbjct: 172 P-GPLACNTFLHVLEDAKEYRRAEALFRDLEKYECEPNIDTYNRMIVIYGKAGEPSKAEM 230

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
            +  M +    P+  T++A+++ +A+ G   E    +++     +KPD  A++ L + + 
Sbjct: 231 LYRSMRRAMCPPNICTFTALMNAFARQGLYREAERYFDKLQEFDYKPDHYAYNALMEAYS 290

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
           + G   G   + Q M+  G  P+ V +N L+ A G+AG    A  +F  M  +G +P+ K
Sbjct: 291 QGGSPAGALEIFQTMQRNGCFPDTVSHNILINAYGRAGLYEDAEKIFKSMQSAGFSPNLK 350

Query: 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
           +   L+  Y +A   ++A EL   M  +    D ++YN L+N     G  E+ E L   M
Sbjct: 351 SNMLLLSAYARAGRVEEAEELVSAMERDGTKPDTLIYNALINAYGVSGRHEDMEALLAKM 410

Query: 424 --KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
               S   KPD  +Y  ++ +Y   G +  A ELF+ ++ L +  +    T L+    K 
Sbjct: 411 VKSSSKQTKPDIGTYNTLIQVYAQAGFIPKAEELFQGLARLKLVPDATTWTALMGGYAKK 470

Query: 482 RRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQ 530
           +       +    ++ G + D      L S     E  E V +++  LQ
Sbjct: 471 KLYRKCTSILKKMLESGCRADAVTARVLFSACRSPEQVEQVTQLMESLQ 519


>gi|10177016|dbj|BAB10204.1| maize crp1 protein-like [Arabidopsis thaliana]
          Length = 680

 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 85/302 (28%), Positives = 139/302 (46%), Gaps = 2/302 (0%)

Query: 200 GRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVT 259
           GR  +  E L  E+  + I+     Y+ ++    +     +A      M K G+ PDE T
Sbjct: 289 GRTLE-AEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHT 347

Query: 260 YSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMK 319
           YS ++D Y  +G+ E    + +   A   +P+   FS L   F + G++     VL+EMK
Sbjct: 348 YSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMK 407

Query: 320 SLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAK 379
           S+GV+P+   YN +++  GK      A + FD M+  G+ PD  T   LI  + K     
Sbjct: 408 SIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHI 467

Query: 380 DALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAM 439
            A E++E M           YN ++N   D    ++ +RL   MK S    P+  ++T +
Sbjct: 468 VAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMK-SQGILPNVVTHTTL 526

Query: 440 LNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGV 499
           +++YG  G  ++AIE  EEM  +G+  +      LI    +    +  V  F V    G+
Sbjct: 527 VDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGL 586

Query: 500 KP 501
           KP
Sbjct: 587 KP 588



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/269 (28%), Positives = 139/269 (51%), Gaps = 8/269 (2%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLA---NEMVSNEIELDNI 223
           WQK++     +KS  + P +  FYNV + +  FG+ F  ++      + M+S  IE D +
Sbjct: 396 WQKTFQVLKEMKSIGVKP-DRQFYNVVIDT--FGK-FNCLDHAMTTFDRMLSEGIEPDRV 451

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           T++T+I C  +      A E FE M + G +P   TY+ +++ Y    + +++  L  + 
Sbjct: 452 TWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKM 511

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
            + G  P+ +  + L  ++G+SG ++     L+EMKS+G++P+  +YN L+ A  + G  
Sbjct: 512 KSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLS 571

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
             A + F  M   GL P    L +LI  +G+ R   +A  + + M+EN    D + Y TL
Sbjct: 572 EQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTL 631

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPD 432
           +     +   ++   ++E+M +S  CKPD
Sbjct: 632 MKALIRVDKFQKVPVVYEEMIMSG-CKPD 659



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/351 (26%), Positives = 160/351 (45%), Gaps = 7/351 (1%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           T  +II+         EA   FE + ++G+ P    Y+A+L  Y K+G +++  S+    
Sbjct: 277 TLVSIISALADSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEM 336

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
              G  PD   +S+L   +  +G ++  R VL+EM++  VQPN  V++ LL      G+ 
Sbjct: 337 EKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEW 396

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
                +  EM   G+ PD +    +I  +GK      A+  ++RM       D + +NTL
Sbjct: 397 QKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTL 456

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           ++     G    AE +FE M+    C P   +Y  M+N YG     D+   L  +M   G
Sbjct: 457 IDCHCKHGRHIVAEEMFEAMERRG-CLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQG 515

Query: 464 VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVS---LCETSE 520
           +  NV+  T L+   GK+ R +D +         G+KP   +   L++  +   L E + 
Sbjct: 516 ILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAV 575

Query: 521 DVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRP 571
           +  +V+T      P L+A  +LI  N+ G +    E   V++  + +  +P
Sbjct: 576 NAFRVMTS-DGLKPSLLALNSLI--NAFGEDRRDAEAFAVLQYMKENGVKP 623



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 87/350 (24%), Positives = 152/350 (43%), Gaps = 43/350 (12%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           W+ +      +++ ++ P   +F  + +   R   ++Q   Q+  EM S  ++ D   Y+
Sbjct: 361 WESARIVLKEMEAGDVQPNSFVFSRL-LAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYN 419

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK---VEEVLSLYERG 283
            +I    + N  D A+  F+RM   G+ PD VT++ ++D + K G+    EE+    ER 
Sbjct: 420 VVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMER- 478

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
              G  P    ++++   +G+   +D ++ +L +MKS G+ PN+V + TL++  GK+G+ 
Sbjct: 479 --RGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRF 536

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
             A    +EM   GL P      ALI  Y                               
Sbjct: 537 NDAIECLEEMKSVGLKPSSTMYNALINAY------------------------------- 565

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
               A  GL E+A   F  M  SD  KP   +  +++N +G       A  + + M E G
Sbjct: 566 ----AQRGLSEQAVNAFRVMT-SDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKENG 620

Query: 464 VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVV 513
           V  +V+  T L++ L +  +   +  V+   I  G KPD +    L S +
Sbjct: 621 VKPDVVTYTTLMKALIRVDKFQKVPVVYEEMIMSGCKPDRKARSMLRSAL 670



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/335 (23%), Positives = 155/335 (46%), Gaps = 8/335 (2%)

Query: 170 SYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTII 229
           +Y   +W++  NL     + Y++ + +L  GR  +L E     ++S +  L  +TY+ +I
Sbjct: 121 AYAVVSWLQKHNLCFSYELLYSILIHAL--GRSEKLYEAF---LLSQKQTLTPLTYNALI 175

Query: 230 TCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV--LSLYERGVASG 287
               R N  ++A+    +M + G   D V YS ++    +S K++ V  L LY+      
Sbjct: 176 GACARNNDIEKALNLIAKMRQDGYQSDFVNYSLVIQSLTRSNKIDSVMLLRLYKEIERDK 235

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
            + D    + +   F +SGD      +L   ++ G+        +++ A+  +G+   A 
Sbjct: 236 LELDVQLVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSIISALADSGRTLEAE 295

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
           +LF+E+ +SG+ P  +   AL+K Y K    KDA  +   M +     D   Y+ L++  
Sbjct: 296 ALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAY 355

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
            + G  E A  + ++M+  D  +P+++ ++ +L  +   G      ++ +EM  +GV  +
Sbjct: 356 VNAGRWESARIVLKEMEAGD-VQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPD 414

Query: 468 VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
                 +I   GK   +D  +  F   +  G++PD
Sbjct: 415 RQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPD 449


>gi|356538593|ref|XP_003537787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Glycine max]
          Length = 583

 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 155/296 (52%), Gaps = 1/296 (0%)

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
           + +  EM++N+I  + IT++T+I    +      A   FE M + GL P+ VTY+++++ 
Sbjct: 258 DAILKEMLANKICPNEITFNTLIDGFCKDENVLAAKNAFEEMQRQGLKPNIVTYNSLING 317

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
            + +GK++E ++L+++ V  G KP+ + F+ L   F +       R +  ++    + PN
Sbjct: 318 LSNNGKLDEAIALWDKMVGLGLKPNIVTFNALINGFCKKKMIKEARKLFDDIAEQDLVPN 377

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
            + +NT+++A  KAG      +L + M++ G+ P+  T   LI    + +  + A +L  
Sbjct: 378 AITFNTMIDAFCKAGMMEEGFALHNSMLDEGIFPNVSTYNCLIAGLCRNQNVRAAKKLLN 437

Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
            M   +   D + YN L+      G   +AE+L  +M L+   KP++ +Y  +++ Y   
Sbjct: 438 EMENYELKADVVTYNILIGGWCKDGEPSKAEKLLGEM-LNVGVKPNHVTYNTLMDGYCME 496

Query: 447 GNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           GN+  A+++  +M + G   NV+    LI+   K  +++D  R+    +++G+ P+
Sbjct: 497 GNLKAALKVRTQMEKEGKRANVVTYNVLIKGFCKTGKLEDANRLLNEMLEKGLNPN 552



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 152/315 (48%), Gaps = 4/315 (1%)

Query: 191 NVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYK 250
           N  + +L  G +   ++ +  EM+   I+ +  T++  I    +    ++A +  E +  
Sbjct: 169 NPLLSALVKGNETGEMQYVYKEMIKRRIQPNLTTFNIFINGLCKAGKLNKAEDVIEDIKA 228

Query: 251 TGLMPDEVTYSAILDVYAK---SGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
            G  P+ VTY+ ++D + K   +GK+    ++ +  +A+   P+ I F+ L   F +  +
Sbjct: 229 WGFSPNIVTYNTLIDGHCKKGSAGKMYRADAILKEMLANKICPNEITFNTLIDGFCKDEN 288

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
               +   +EM+  G++PN+V YN+L+  +   GK   A +L+D+MV  GL P+  T  A
Sbjct: 289 VLAAKNAFEEMQRQGLKPNIVTYNSLINGLSNNGKLDEAIALWDKMVGLGLKPNIVTFNA 348

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           LI  + K +  K+A +L++ + E     + I +NT+++     G++EE   L   M L +
Sbjct: 349 LINGFCKKKMIKEARKLFDDIAEQDLVPNAITFNTMIDAFCKAGMMEEGFALHNSM-LDE 407

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
              P+  +Y  ++       NV  A +L  EM    +  +V+    LI    K       
Sbjct: 408 GIFPNVSTYNCLIAGLCRNQNVRAAKKLLNEMENYELKADVVTYNILIGGWCKDGEPSKA 467

Query: 488 VRVFGVSIDRGVKPD 502
            ++ G  ++ GVKP+
Sbjct: 468 EKLLGEMLNVGVKPN 482



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 66/279 (23%), Positives = 134/279 (48%), Gaps = 6/279 (2%)

Query: 241 AIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGK 300
           A E F R+   G      + + +L    K  +  E+  +Y+  +    +P+   F++   
Sbjct: 149 ACEVFRRVQDYGFKLSLNSCNPLLSALVKGNETGEMQYVYKEMIKRRIQPNLTTFNIFIN 208

Query: 301 MFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM---GKAGKPGLARSLFDEMVESG 357
              ++G  +    V++++K+ G  PN+V YNTL++     G AGK   A ++  EM+ + 
Sbjct: 209 GLCKAGKLNKAEDVIEDIKAWGFSPNIVTYNTLIDGHCKKGSAGKMYRADAILKEMLANK 268

Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417
           + P+E T   LI  + K      A   +E M+      + + YN+L+N  ++ G ++EA 
Sbjct: 269 ICPNEITFNTLIDGFCKDENVLAAKNAFEEMQRQGLKPNIVTYNSLINGLSNNGKLDEAI 328

Query: 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
            L++ M +    KP+  ++ A++N +     +  A +LF++++E  +  N +    +I  
Sbjct: 329 ALWDKM-VGLGLKPNIVTFNALINGFCKKKMIKEARKLFDDIAEQDLVPNAITFNTMIDA 387

Query: 478 LGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLC 516
             KA  +++   +    +D G+ P+     CL++   LC
Sbjct: 388 FCKAGMMEEGFALHNSMLDEGIFPNVSTYNCLIA--GLC 424



 Score = 89.0 bits (219), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 126/263 (47%), Gaps = 2/263 (0%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           F  ++ Q L P   + YN  +  L    +      L ++MV   ++ + +T++ +I    
Sbjct: 296 FEEMQRQGLKP-NIVTYNSLINGLSNNGKLDEAIALWDKMVGLGLKPNIVTFNALINGFC 354

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
           +  +  EA + F+ + +  L+P+ +T++ ++D + K+G +EE  +L+   +  G  P+  
Sbjct: 355 KKKMIKEARKLFDDIAEQDLVPNAITFNTMIDAFCKAGMMEEGFALHNSMLDEGIFPNVS 414

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
            ++ L      + +    + +L EM++  ++ ++V YN L+    K G+P  A  L  EM
Sbjct: 415 TYNCLIAGLCRNQNVRAAKKLLNEMENYELKADVVTYNILIGGWCKDGEPSKAEKLLGEM 474

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
           +  G+ P+  T   L+  Y      K AL++  +M +     + + YN L+      G +
Sbjct: 475 LNVGVKPNHVTYNTLMDGYCMEGNLKAALKVRTQMEKEGKRANVVTYNVLIKGFCKTGKL 534

Query: 414 EEAERLFEDMKLSDYCKPDNYSY 436
           E+A RL  +M L     P+  +Y
Sbjct: 535 EDANRLLNEM-LEKGLNPNRTTY 556



 Score = 39.7 bits (91), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 56/115 (48%), Gaps = 3/115 (2%)

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
           E+L  EM++  ++ +++TY+T++           A++   +M K G   + VTY+ ++  
Sbjct: 468 EKLLGEMLNVGVKPNHVTYNTLMDGYCMEGNLKAALKVRTQMEKEGKRANVVTYNVLIKG 527

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG---DYDGIRYVLQEM 318
           + K+GK+E+   L    +  G  P+   + V+     E G   D +G  Y +  M
Sbjct: 528 FCKTGKLEDANRLLNEMLEKGLNPNRTTYDVVRLEMLEKGFIPDIEGHLYNISSM 582


>gi|115480461|ref|NP_001063824.1| Os09g0542800 [Oryza sativa Japonica Group]
 gi|32526676|dbj|BAC79199.1| chloroplast RNA processing 1 -like protein [Oryza sativa Japonica
           Group]
 gi|113632057|dbj|BAF25738.1| Os09g0542800 [Oryza sativa Japonica Group]
 gi|125606498|gb|EAZ45534.1| hypothetical protein OsJ_30195 [Oryza sativa Japonica Group]
 gi|215768653|dbj|BAH00882.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 543

 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 86/336 (25%), Positives = 160/336 (47%), Gaps = 10/336 (2%)

Query: 172 FFFNWIKSQNLFPMETI--FYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTII 229
           FF + + S    P +++   Y   +  L     F L   L +EM    + +       +I
Sbjct: 130 FFHHVLPS---LPPDSLPALYAAMIDLLAKHHHFPLARHLLDEMRERSVPISAQLILALI 186

Query: 230 TCAKRCNLFDEAIEWFERMYKTGL-MPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
               R  +  EA + F RM + G   PD  T +++L   +K     E  ++++    S +
Sbjct: 187 RRYVRAEMPSEASDLFRRMEEYGAGAPDPATLASLLGALSKKRLASEAQAMFD-SYKSVF 245

Query: 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348
            PD + ++ L   +  SG  +    V  EM+  GV PN+  Y  +++AM +AG+   A+ 
Sbjct: 246 TPDVVLYTTLVHAWCRSGRLNEAERVFAEMQQAGVTPNVYTYTAVIDAMYRAGQVPRAQE 305

Query: 349 LFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCA 408
           L  +M++SG  P+  T  A+++ + KA  ++  L++  +MR+     D I YN L+    
Sbjct: 306 LLCQMIDSGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMRQLGCEPDIITYNFLMETHC 365

Query: 409 DIGL--VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
             G   ++ A ++   M ++  C PD +++  ML +    GNV+ A +L+E M EL    
Sbjct: 366 GKGQSNLDAAMKMLTRM-IAKGCIPDCHTFNPMLKLVLVLGNVNAARKLYERMQELQCKP 424

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           NV+    L++     + +D ++R+      +GV+P+
Sbjct: 425 NVVTYNLLMRLFNLEKSMDMVLRIKKDMDAQGVEPN 460



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 100/209 (47%), Gaps = 5/209 (2%)

Query: 184 PMETIFYNVTMKS-LRFGRQFQLIEQLANEMVSNEIELDNITYSTII--TCAKRCNLFDE 240
           P  T  +N  M++ ++ GR  Q++ Q+ N+M     E D ITY+ ++   C K  +  D 
Sbjct: 316 PPNTATFNAIMRAHVKAGRSEQVL-QVHNQMRQLGCEPDIITYNFLMETHCGKGQSNLDA 374

Query: 241 AIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGK 300
           A++   RM   G +PD  T++ +L +    G V     LYER      KP+ + +++L +
Sbjct: 375 AMKMLTRMIAKGCIPDCHTFNPMLKLVLVLGNVNAARKLYERMQELQCKPNVVTYNLLMR 434

Query: 301 MFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMV-ESGLT 359
           +F      D +  + ++M + GV+PN+  Y  L+EA    G    A     EMV E  L 
Sbjct: 435 LFNLEKSMDMVLRIKKDMDAQGVEPNVNTYAALIEAFCGRGNWKRAHMTLREMVEEKALK 494

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERM 388
           P +     ++ +  KA   +   EL E M
Sbjct: 495 PTKPVYDMVLALLRKAGQLRRHEELVEMM 523



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 81/357 (22%), Positives = 149/357 (41%), Gaps = 49/357 (13%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKS-LRFGRQFQLIE 207
           P   T  + L  L+  +   ++   F+  KS  +F  + + Y   + +  R GR     E
Sbjct: 213 PDPATLASLLGALSKKRLASEAQAMFDSYKS--VFTPDVVLYTTLVHAWCRSGR-LNEAE 269

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           ++  EM    +  +  TY+ +I    R      A E   +M  +G  P+  T++AI+  +
Sbjct: 270 RVFAEMQQAGVTPNVYTYTAVIDAMYRAGQVPRAQELLCQMIDSGCPPNTATFNAIMRAH 329

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            K+G+ E+VL ++                                    +M+ LG +P++
Sbjct: 330 VKAGRSEQVLQVH-----------------------------------NQMRQLGCEPDI 354

Query: 328 VVYNTLLEAMGKAGKPGL--ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
           + YN L+E     G+  L  A  +   M+  G  PD  T   ++K+         A +L+
Sbjct: 355 ITYNFLMETHCGKGQSNLDAAMKMLTRMIAKGCIPDCHTFNPMLKLVLVLGNVNAARKLY 414

Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445
           ERM+E +   + + YN L+ +      ++   R+ +DM  +   +P+  +Y A++  +  
Sbjct: 415 ERMQELQCKPNVVTYNLLMRLFNLEKSMDMVLRIKKDMD-AQGVEPNVNTYAALIEAFCG 473

Query: 446 GGNVDNAIELFEEMSE---LGVAINVMGCT-CLIQCLGKARRIDDLVRVFGVSIDRG 498
            GN   A     EM E   L     V      L++  G+ RR ++LV +    +DRG
Sbjct: 474 RGNWKRAHMTLREMVEEKALKPTKPVYDMVLALLRKAGQLRRHEELVEMM---VDRG 527



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 99/221 (44%), Gaps = 5/221 (2%)

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
           +Y  +++ + K     LAR L DEM E  +    + + ALI+ Y +A    +A +L+ RM
Sbjct: 146 LYAAMIDLLAKHHHFPLARHLLDEMRERSVPISAQLILALIRRYVRAEMPSEASDLFRRM 205

Query: 389 RE-NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
            E      D     +LL   +   L  EA+ +F+  K      PD   YT +++ +   G
Sbjct: 206 EEYGAGAPDPATLASLLGALSKKRLASEAQAMFDSYK--SVFTPDVVLYTTLVHAWCRSG 263

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCG 507
            ++ A  +F EM + GV  NV   T +I  + +A ++     +    ID G  P+     
Sbjct: 264 RLNEAERVFAEMQQAGVTPNVYTYTAVIDAMYRAGQVPRAQELLCQMIDSGCPPNTATFN 323

Query: 508 CLLSVVSLCETSEDVGKVITCLQQ--ANPKLVAFLNLIEDN 546
            ++        SE V +V   ++Q    P ++ +  L+E +
Sbjct: 324 AIMRAHVKAGRSEQVLQVHNQMRQLGCEPDIITYNFLMETH 364


>gi|414864940|tpg|DAA43497.1| TPA: hypothetical protein ZEAMMB73_100357 [Zea mays]
          Length = 816

 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 88/320 (27%), Positives = 151/320 (47%), Gaps = 28/320 (8%)

Query: 159 LILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEI 218
           +IL   K W+++   F+W + +    +  I YNV + ++   R++ L+ +L  EM S  +
Sbjct: 108 IILKEQKDWRRAVEIFDWFRREQGHELNVIHYNVVLNTVGKARRWDLVLRLWYEMHSFGV 167

Query: 219 ELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS 278
             DN TY T+I    +      A+ W   M K GLMPDEVT S ++  + K+G+ E    
Sbjct: 168 APDNSTYGTLINVCCQGGREWTALLWLGDMCKRGLMPDEVTMSIVMQAHKKAGEYETAEI 227

Query: 279 LYERGVASGWKPDPI------------AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
            +ER     W  D I             ++ L   +G++G  + +     +M S GV P+
Sbjct: 228 FFER-----WSSDSIRRMEGRSHYNLYTYNTLIDTYGKAGHLEKVSDTFNQMLSEGVAPS 282

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL-- 384
           +V +N+++ A GK  +     SL   M E    PD +T   LI +Y ++    D +++  
Sbjct: 283 VVTFNSMIHAWGKHHRMEKVASLVRMMEEFQCFPDTRTYNILIALYRES----DDIDIAE 338

Query: 385 ---WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
              W+   EN  P D +   TLL   +  G+V +AE L ++M    +   D Y+ +A+  
Sbjct: 339 YYYWKMKTENLVP-DVVSCRTLLYGYSIRGMVTKAEALLKEMDERGF-MVDEYTQSALTR 396

Query: 442 IYGSGGNVDNAIELFEEMSE 461
           +Y + G ++ A   F+    
Sbjct: 397 MYVNVGMLEQAWRWFDRFHH 416



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 136/273 (49%), Gaps = 12/273 (4%)

Query: 236 NLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAF 295
            + DEA E    M +  ++PD VTY++++ + + +   ++ +   E+        D I +
Sbjct: 468 GMLDEACEIANGMERYDILPDYVTYTSLIQLLSTAKLPKKAIYYLEKMKVVKLLSDCIPY 527

Query: 296 SVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVE 355
           SV+   F ++GD     Y+ +EM   GV+P++ VY+ L++A  + G    A + F  M +
Sbjct: 528 SVVISSFAKNGDLRMSEYLFREMIMSGVRPDIFVYSILIDAYAEVGNVQQASAYFGLMKK 587

Query: 356 SGLTPDEKTLTALIKIYGKARW---AKDALELWERMRENKWPMDFILY--NTLLNMCADI 410
            GL  +     +LIK+Y K  +   A+ A +L + +  N      ILY  N ++++ +D 
Sbjct: 588 DGLYENVTIYNSLIKLYTKVGYVPEARGAYKLLKSLDTNA-----ILYASNCMIDLYSDH 642

Query: 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG 470
            +V+EA  +F+ +K+      + +S+  M+ +Y   G  D A  + +EM  LG+   ++ 
Sbjct: 643 CMVKEACEVFDSLKVRGI--ANEFSHAMMVCMYKKVGRYDVAHRVCKEMQALGLLTQLLS 700

Query: 471 CTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
              +IQ      R ++ +++F   +     P+D
Sbjct: 701 YNSVIQMYVSGGRTEEALKIFKKMLASNTPPND 733



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 132/304 (43%), Gaps = 16/304 (5%)

Query: 183 FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
           FP +T  YN+ +   R      + E    +M +  +  D ++  T++       +  +A 
Sbjct: 315 FP-DTRTYNILIALYRESDDIDIAEYYYWKMKTENLVPDVVSCRTLLYGYSIRGMVTKAE 373

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
              + M + G M DE T SA+  +Y   G +E+    ++R        +   FS     F
Sbjct: 374 ALLKEMDERGFMVDEYTQSALTRMYVNVGMLEQAWRWFDR---FHHHMNSECFSANIDAF 430

Query: 303 GESGDYDGIRYVLQEMKSLGV-----QPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
           GE G      Y++   K+          ++   N +++A G  G    A  + + M    
Sbjct: 431 GEKG------YIVLAEKAFVCCLKKKMISVSACNVMIKAYGLVGMLDEACEIANGMERYD 484

Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417
           + PD  T T+LI++   A+  K A+   E+M+  K   D I Y+ +++  A  G +  +E
Sbjct: 485 ILPDYVTYTSLIQLLSTAKLPKKAIYYLEKMKVVKLLSDCIPYSVVISSFAKNGDLRMSE 544

Query: 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
            LF +M +S   +PD + Y+ +++ Y   GNV  A   F  M + G+  NV     LI+ 
Sbjct: 545 YLFREMIMSG-VRPDIFVYSILIDAYAEVGNVQQASAYFGLMKKDGLYENVTIYNSLIKL 603

Query: 478 LGKA 481
             K 
Sbjct: 604 YTKV 607



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 61/283 (21%), Positives = 117/283 (41%), Gaps = 45/283 (15%)

Query: 148 IPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIE 207
           +P   T  + + +L++ K  +K+ ++   +K   L   + I Y+V + S       ++ E
Sbjct: 486 LPDYVTYTSLIQLLSTAKLPKKAIYYLEKMKVVKLLS-DCIPYSVVISSFAKNGDLRMSE 544

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
            L  EM+ + +  D   YS +I          +A  +F  M K GL  +   Y++++ +Y
Sbjct: 545 YLFREMIMSGVRPDIFVYSILIDAYAEVGNVQQASAYFGLMKKDGLYENVTIYNSLIKLY 604

Query: 268 AKSGKVEEVLSLYE---------------------------------------RGVASGW 288
            K G V E    Y+                                       RG+A   
Sbjct: 605 TKVGYVPEARGAYKLLKSLDTNAILYASNCMIDLYSDHCMVKEACEVFDSLKVRGIA--- 661

Query: 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348
             +  + +++  M+ + G YD    V +EM++LG+   L+ YN++++     G+   A  
Sbjct: 662 --NEFSHAMMVCMYKKVGRYDVAHRVCKEMQALGLLTQLLSYNSVIQMYVSGGRTEEALK 719

Query: 349 LFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN 391
           +F +M+ S   P++ T  AL  I  ++   K+     E +R N
Sbjct: 720 IFKKMLASNTPPNDATFQALKVILVRSGVTKNETRKLELLRRN 762



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 106/248 (42%), Gaps = 34/248 (13%)

Query: 275 EVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLL 334
           E+   + R    G + + I ++V+    G++  +D +  +  EM S GV P+   Y TL+
Sbjct: 121 EIFDWFRR--EQGHELNVIHYNVVLNTVGKARRWDLVLRLWYEMHSFGVAPDNSTYGTLI 178

Query: 335 EAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWP 394
               + G+   A     +M + GL PDE T++ +++ + KA   + A   +ER     W 
Sbjct: 179 NVCCQGGREWTALLWLGDMCKRGLMPDEVTMSIVMQAHKKAGEYETAEIFFER-----WS 233

Query: 395 MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIE 454
            D I                         ++      + Y+Y  +++ YG  G+++   +
Sbjct: 234 SDSI------------------------RRMEGRSHYNLYTYNTLIDTYGKAGHLEKVSD 269

Query: 455 LFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVS 514
            F +M   GVA +V+    +I   GK  R++ +  +  +  +    PD R    L   ++
Sbjct: 270 TFNQMLSEGVAPSVVTFNSMIHAWGKHHRMEKVASLVRMMEEFQCFPDTRTYNIL---IA 326

Query: 515 LCETSEDV 522
           L   S+D+
Sbjct: 327 LYRESDDI 334


>gi|302826107|ref|XP_002994593.1| hypothetical protein SELMODRAFT_138846 [Selaginella moellendorffii]
 gi|300137364|gb|EFJ04344.1| hypothetical protein SELMODRAFT_138846 [Selaginella moellendorffii]
          Length = 521

 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 94/361 (26%), Positives = 160/361 (44%), Gaps = 17/361 (4%)

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
           EW   +  T   PD   Y+ ++D Y KS  +E+    + R   +   P+   F VL   +
Sbjct: 92  EWV--LQGTTFRPDLGCYNLLIDAYGKSLNIEDAEKTFNRMQEALCVPNEETFGVLINGY 149

Query: 303 GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
             +G ++    +  +M+  G  P  +  NT L  +  A +   A +LF ++ +    P+ 
Sbjct: 150 RLAGSFEKAEELFVQMQKRGYSPGPLACNTFLHVLEDAKEYRRAEALFRDLEKYECEPNI 209

Query: 363 KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED 422
            T   +I IYGKA     A  L+  MR    P +   +  L+N  A  GL  EAER F+ 
Sbjct: 210 DTYNRMIVIYGKAGEPSKAEMLYRSMRRAMCPPNICTFTALMNAFARQGLYREAERYFDK 269

Query: 423 MKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKAR 482
           ++  DY KPD+Y+Y A++  Y  GG+   A+E+F+ M   G   + +    LI   G+A 
Sbjct: 270 LQEFDY-KPDHYAYNALMEAYSQGGSPAGALEIFQTMQRNGCFPDTVSHNILINAYGRAG 328

Query: 483 RIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ--ANPKLVAFL 540
             +D  ++F      G  P+ +    LLS  +     E+  ++++ +++    P  + + 
Sbjct: 329 LYEDAEKIFKSMQSAGFSPNLKSNMLLLSAYARAGRVEEAEELVSAMERDGTKPDTLIYN 388

Query: 541 NLIEDNSTGFENIKEEFRNVI--------KDTEVDARRPFCNCLIDICRNRNLNERAHEL 592
           +LI  N+ G     E+   ++        K T+ D      N LI +        RA EL
Sbjct: 389 SLI--NAYGVSGRHEDMEALLAKMVKSSSKQTKPDIGT--YNTLIQVYAQAGFIPRAEEL 444

Query: 593 L 593
            
Sbjct: 445 F 445



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 94/409 (22%), Positives = 182/409 (44%), Gaps = 8/409 (1%)

Query: 127 FARKLNDCDNTEEAFLRAITEIPHQPTRENALLILNSLKF---WQKSYFFFNWIKSQNLF 183
           + + LN  ++ E+ F R + E    P  E   +++N  +    ++K+   F  ++ +   
Sbjct: 114 YGKSLN-IEDAEKTFNR-MQEALCVPNEETFGVLINGYRLAGSFEKAEELFVQMQKRGYS 171

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           P   +  N  +  L   ++++  E L  ++   E E +  TY+ +I    +     +A  
Sbjct: 172 P-GPLACNTFLHVLEDAKEYRRAEALFRDLEKYECEPNIDTYNRMIVIYGKAGEPSKAEM 230

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
            +  M +    P+  T++A+++ +A+ G   E    +++     +KPD  A++ L + + 
Sbjct: 231 LYRSMRRAMCPPNICTFTALMNAFARQGLYREAERYFDKLQEFDYKPDHYAYNALMEAYS 290

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
           + G   G   + Q M+  G  P+ V +N L+ A G+AG    A  +F  M  +G +P+ K
Sbjct: 291 QGGSPAGALEIFQTMQRNGCFPDTVSHNILINAYGRAGLYEDAEKIFKSMQSAGFSPNLK 350

Query: 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
           +   L+  Y +A   ++A EL   M  +    D ++YN+L+N     G  E+ E L   M
Sbjct: 351 SNMLLLSAYARAGRVEEAEELVSAMERDGTKPDTLIYNSLINAYGVSGRHEDMEALLAKM 410

Query: 424 --KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
               S   KPD  +Y  ++ +Y   G +  A ELF+ ++ L +  +    T L+    K 
Sbjct: 411 VKSSSKQTKPDIGTYNTLIQVYAQAGFIPRAEELFQGLARLKLVPDATTWTALMGGYAKK 470

Query: 482 RRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQ 530
           +       +    ++ G + D      L S     E  E V +++  LQ
Sbjct: 471 KLYRKCTSILKKMLESGCRADAVTARVLFSACRSPEQVEQVTQLMESLQ 519



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/328 (22%), Positives = 141/328 (42%), Gaps = 39/328 (11%)

Query: 225 YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
           Y+ +I    +    ++A + F RM +   +P+E T+  +++ Y  +G  E+   L+ +  
Sbjct: 107 YNLLIDAYGKSLNIEDAEKTFNRMQEALCVPNEETFGVLINGYRLAGSFEKAEELFVQMQ 166

Query: 285 ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344
             G+ P P+A +    +  ++ +Y     + ++++    +PN+  YN ++   GKAG+P 
Sbjct: 167 KRGYSPGPLACNTFLHVLEDAKEYRRAEALFRDLEKYECEPNIDTYNRMIVIYGKAGEPS 226

Query: 345 LARSL-----------------------------------FDEMVESGLTPDEKTLTALI 369
            A  L                                   FD++ E    PD     AL+
Sbjct: 227 KAEMLYRSMRRAMCPPNICTFTALMNAFARQGLYREAERYFDKLQEFDYKPDHYAYNALM 286

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
           + Y +      ALE+++ M+ N    D + +N L+N     GL E+AE++F+ M+ + + 
Sbjct: 287 EAYSQGGSPAGALEIFQTMQRNGCFPDTVSHNILINAYGRAGLYEDAEKIFKSMQSAGF- 345

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
            P+  S   +L+ Y   G V+ A EL   M   G   + +    LI   G + R +D+  
Sbjct: 346 SPNLKSNMLLLSAYARAGRVEEAEELVSAMERDGTKPDTLIYNSLINAYGVSGRHEDMEA 405

Query: 490 VFG---VSIDRGVKPDDRLCGCLLSVVS 514
           +      S  +  KPD      L+ V +
Sbjct: 406 LLAKMVKSSSKQTKPDIGTYNTLIQVYA 433


>gi|225423589|ref|XP_002275605.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Vitis vinifera]
          Length = 644

 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 87/348 (25%), Positives = 170/348 (48%), Gaps = 6/348 (1%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           ++    + ++ +  FP  ++ +NV +  L        + +L + M       + +TY+TI
Sbjct: 225 EAVLLLDEMQIEGCFP-SSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTI 283

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
           I         D+A+   +RM  +  +P++VTY  +++   K G+  + + L       G 
Sbjct: 284 INGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGH 343

Query: 289 KPDPIAFSVL-GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
             +  A+S L   +F E    + +  + ++M   G QPN+VVY+ L++ + + GK   A+
Sbjct: 344 HANEYAYSTLISGLFKEEKSEEAMG-LWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAK 402

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
            +  EMV  G TP+  T ++LIK + K   ++ A+ +W+ M +N    + I Y+ L++  
Sbjct: 403 EILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGL 462

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM--SELGVA 465
            + G + EA  ++  M L    +PD  +Y++M++   + G+V+  ++LF EM   E    
Sbjct: 463 CEDGKLREAMMMWTHM-LGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQ 521

Query: 466 INVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVV 513
            +V+    L++ L K   I   + +    +DRG  PD   C   L+ +
Sbjct: 522 PDVVTYNILLRALCKQNSISHAIDLLNSMLDRGCNPDLITCNIFLNAL 569



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/314 (23%), Positives = 152/314 (48%), Gaps = 3/314 (0%)

Query: 190 YNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERM 248
           +N+ +K++ + G   + IE +  EM   + E D  TY T++    + +  DEA+   + M
Sbjct: 175 FNLVIKAMCKLGLVDRAIE-VFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEM 233

Query: 249 YKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY 308
              G  P  VT++ +++   K G +  V  L +     G  P+ + ++ +       G  
Sbjct: 234 QIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKL 293

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
           D    +L  M +    PN V Y TL+  + K G+      L   + E G   +E   + L
Sbjct: 294 DKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTL 353

Query: 369 IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428
           I    K   +++A+ LW++M E     + ++Y+ L++     G ++EA+ +  +M ++  
Sbjct: 354 ISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEM-VNKG 412

Query: 429 CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLV 488
           C P+ ++Y++++  +   GN   AI +++EM++     N +  + LI  L +  ++ + +
Sbjct: 413 CTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAM 472

Query: 489 RVFGVSIDRGVKPD 502
            ++   + RG++PD
Sbjct: 473 MMWTHMLGRGLRPD 486



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/281 (20%), Positives = 124/281 (44%), Gaps = 3/281 (1%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMY--KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYE 281
           ++++++    +  LF  A+E++E     KT + P+ ++++ ++    K G V+  + ++ 
Sbjct: 137 SFNSVLNVIIQEGLFHRALEFYECGVGGKTNISPNVLSFNLVIKAMCKLGLVDRAIEVFR 196

Query: 282 RGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG 341
                  +PD   +  L     +    D    +L EM+  G  P+ V +N L+  + K G
Sbjct: 197 EMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKG 256

Query: 342 KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYN 401
                  L D M   G  P+E T   +I           A+ L +RM  +K   + + Y 
Sbjct: 257 DMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYG 316

Query: 402 TLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461
           TL+N     G   +   L   ++   +   + Y+Y+ +++        + A+ L+++M E
Sbjct: 317 TLINGLVKQGRSVDGVHLLSSLEERGH-HANEYAYSTLISGLFKEEKSEEAMGLWKKMVE 375

Query: 462 LGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            G   N++  + LI  L +  ++D+   +    +++G  P+
Sbjct: 376 KGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPN 416



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 73/326 (22%), Positives = 130/326 (39%), Gaps = 43/326 (13%)

Query: 199 FGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEV 258
           FG  FQ+ +++  E     + ++   +  +     + +L ++AIE F RM         V
Sbjct: 80  FGTLFQVFDRMKRE---RRVFIEK-NFILVFRAYGKAHLPEKAIELFGRMVDEFQCRRTV 135

Query: 259 -TYSAILDVYAKSGKVEEVLSLYERGVA--SGWKPDPIAFSVLGKMFGESGDYDGIRYVL 315
            +++++L+V  + G     L  YE GV   +   P+ ++F+++ K   + G  D    V 
Sbjct: 136 RSFNSVLNVIIQEGLFHRALEFYECGVGGKTNISPNVLSFNLVIKAMCKLGLVDRAIEVF 195

Query: 316 QEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA 375
           +EM     +P++  Y TL++ + K  +   A  L DEM   G  P   T           
Sbjct: 196 REMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVT----------- 244

Query: 376 RWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYS 435
                                   +N L+N     G +    +L ++M L   C P+  +
Sbjct: 245 ------------------------FNVLINGLCKKGDMVRVTKLVDNMFLKG-CVPNEVT 279

Query: 436 YTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSI 495
           Y  ++N     G +D A+ L + M       N +    LI  L K  R  D V +     
Sbjct: 280 YNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLE 339

Query: 496 DRGVKPDDRLCGCLLSVVSLCETSED 521
           +RG   ++     L+S +   E SE+
Sbjct: 340 ERGHHANEYAYSTLISGLFKEEKSEE 365



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 62/146 (42%), Gaps = 3/146 (2%)

Query: 212 EMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG 271
           EM  N    + I YS +I          EA+  +  M   GL PD V YS+++     +G
Sbjct: 442 EMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAG 501

Query: 272 KVEEVLSLYERGVA--SGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVV 329
            VE  L L+   +   S  +PD + +++L +   +         +L  M   G  P+L+ 
Sbjct: 502 SVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDRGCNPDLIT 561

Query: 330 YNTLLEAM-GKAGKPGLARSLFDEMV 354
            N  L A+  K   P   R   DE+V
Sbjct: 562 CNIFLNALREKLNPPQDGREFLDELV 587



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 71/161 (44%), Gaps = 2/161 (1%)

Query: 330 YNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM- 388
           + +L+E    +G  G    +FD M        EK    + + YGKA   + A+EL+ RM 
Sbjct: 67  FYSLIENYANSGDFGTLFQVFDRMKRERRVFIEKNFILVFRAYGKAHLPEKAIELFGRMV 126

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFE-DMKLSDYCKPDNYSYTAMLNIYGSGG 447
            E +       +N++LN+    GL   A   +E  +       P+  S+  ++      G
Sbjct: 127 DEFQCRRTVRSFNSVLNVIIQEGLFHRALEFYECGVGGKTNISPNVLSFNLVIKAMCKLG 186

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLV 488
            VD AIE+F EM+      +V     L+  L K  RID+ V
Sbjct: 187 LVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAV 227


>gi|334183628|ref|NP_001185309.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
 gi|193806276|sp|P0C7R3.1|PP106_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g64583, mitochondrial; Flags: Precursor
 gi|332196135|gb|AEE34256.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
          Length = 512

 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/343 (24%), Positives = 169/343 (49%), Gaps = 5/343 (1%)

Query: 161 LNSLKFWQKSYFFFNWIKSQNLFPMETIF-YNVTMKSLRFGRQFQLIEQLANEMVSNEIE 219
           L+S++F      FF  + SQ   P+ +I  +   + +    R+++ +   + +M    I 
Sbjct: 47  LHSIRFEDAFALFFEMVHSQ---PLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGIS 103

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
            D  +++ +I C  RC+    A+    +M K G  P  VT+ ++L  +    ++ +  SL
Sbjct: 104 HDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSL 163

Query: 280 YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
               V SG++P+ + ++ L     ++G+ +    +L EM+  G+  ++V YNTLL  +  
Sbjct: 164 VILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCY 223

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
           +G+   A  +  +M++  + PD  T TALI ++ K     +A EL++ M ++    + + 
Sbjct: 224 SGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVT 283

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           YN+++N     G + +A++ F D+  S  C P+  +Y  +++ +     VD  ++LF+ M
Sbjct: 284 YNSIINGLCMHGRLYDAKKTF-DLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRM 342

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           S  G   ++     LI    +  ++   + +F   + R V PD
Sbjct: 343 SCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPD 385



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 86/319 (26%), Positives = 149/319 (46%), Gaps = 9/319 (2%)

Query: 192 VTMKSLRFGRQFQLIEQLANE------MVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           VT  SL  G  F L+ ++ +       MV +  E + + Y+T+I    +    + A+E  
Sbjct: 142 VTFGSLLHG--FCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELL 199

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
             M K GL  D VTY+ +L     SG+  +   +    +     PD + F+ L  +F + 
Sbjct: 200 NEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQ 259

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G+ D  + + +EM    V PN V YN+++  +   G+   A+  FD M   G  P+  T 
Sbjct: 260 GNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTY 319

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
             LI  + K R   + ++L++RM    +  D   YNTL++    +G +  A  +F  M +
Sbjct: 320 NTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWM-V 378

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
           S    PD  ++  +L+     G +++A+  F++M E    I ++    +I  L KA +++
Sbjct: 379 SRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVE 438

Query: 486 DLVRVFGVSIDRGVKPDDR 504
               +F      GVKPD R
Sbjct: 439 KAWELFCRLPVEGVKPDAR 457



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 83/307 (27%), Positives = 135/307 (43%), Gaps = 6/307 (1%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
            + YN  +  L    +  +  +L NEM    +  D +TY+T++T       + +A     
Sbjct: 176 VVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLR 235

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAF-SVLGKMFGES 305
            M K  + PD VT++A++DV+ K G ++E   LY+  + S   P+ + + S++  +    
Sbjct: 236 DMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHG 295

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
             YD  +     M S G  PN+V YNTL+    K         LF  M   G   D  T 
Sbjct: 296 RLYDA-KKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTY 354

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
             LI  Y +    + AL+++  M   +   D I +  LL+     G +E A   F+DM+ 
Sbjct: 355 NTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRE 414

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL---GKAR 482
           S+       +Y  M++       V+ A ELF  +   GV  +    T +I  L   G  R
Sbjct: 415 SEK-YIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRR 473

Query: 483 RIDDLVR 489
             D+L+R
Sbjct: 474 EADELIR 480



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 80/168 (47%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           +TY+T+I+   +  + DE ++ F+RM   G   D  TY+ ++  Y + GK+   L ++  
Sbjct: 317 VTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCW 376

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
            V+    PD I   +L      +G+ +       +M+       +V YN ++  + KA K
Sbjct: 377 MVSRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKADK 436

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
              A  LF  +   G+ PD +T T +I    K    ++A EL  RM+E
Sbjct: 437 VEKAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELIRRMKE 484



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 59/271 (21%), Positives = 114/271 (42%), Gaps = 36/271 (13%)

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
           +  S + E+  +L+   V S   P  + F+ L         Y+ + Y  Q+M+  G+  +
Sbjct: 46  FLHSIRFEDAFALFFEMVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHD 105

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
           L  +  L+    +  +   A S+  +M++ G  P   T  +L+  +       DA  L  
Sbjct: 106 LYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVI 165

Query: 387 RMRENKWPMDFILYNTLLN-MC---------------------ADI-------------G 411
            M ++ +  + ++YNTL++ +C                     AD+             G
Sbjct: 166 LMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSG 225

Query: 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC 471
              +A R+  DM +     PD  ++TA+++++   GN+D A EL++EM +  V  N +  
Sbjct: 226 RWSDAARMLRDM-MKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTY 284

Query: 472 TCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
             +I  L    R+ D  + F +   +G  P+
Sbjct: 285 NSIINGLCMHGRLYDAKKTFDLMASKGCFPN 315


>gi|302786208|ref|XP_002974875.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
 gi|300157770|gb|EFJ24395.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
          Length = 382

 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 142/276 (51%), Gaps = 3/276 (1%)

Query: 218 IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTG-LMPDEVTYSAILDVYAKSGKVEEV 276
           ++ ++ T S I+    RC    +A+E F+   +     PD V+Y+ +++   K G+V+  
Sbjct: 6   MQCNDRTTSIILQGLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAA 65

Query: 277 LSLYERGVASG-WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLE 335
             L+ + VA+G  +P+   ++ L     +    D  R V+ E +     P++V YNTL+ 
Sbjct: 66  FDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVIAEARKRDFAPDVVTYNTLMA 125

Query: 336 AMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPM 395
           A+ + G+   A + F +M E G  P   +  A+I    +AR   DALE++  M +  +  
Sbjct: 126 ALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHP 185

Query: 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIEL 455
           + + Y+ +++       ++EA++L + M +S+ C+PD  +YT ++  + + G +D+A+ L
Sbjct: 186 NLVTYSVVIDGLCKSDQLDEAQQLLDRM-VSEGCRPDLVAYTPLVLGFSAAGRLDSALGL 244

Query: 456 FEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
              M   G   +V+  T +I  L K  R+DD   +F
Sbjct: 245 LRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIF 280



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 114/243 (46%), Gaps = 4/243 (1%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D +TY+T++    +    DEA+  F +M + G +P  V+++AI+    ++ ++ + L ++
Sbjct: 116 DVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVF 175

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
              +   + P+ + +SV+     +S   D  + +L  M S G +P+LV Y  L+     A
Sbjct: 176 NEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAA 235

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G+   A  L   MV  G  PD  T T +I    K     DA E++  +  NK   + + Y
Sbjct: 236 GRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTY 295

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           + L+        V+E  ++  +M     C+P+  +Y  M+         + A  +F EMS
Sbjct: 296 SALIGGYCRASRVDEGGKVMREMA----CRPNVVTYNTMIWGLSMVDRNEEAYGMFREMS 351

Query: 461 ELG 463
           E G
Sbjct: 352 ECG 354



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 91/195 (46%), Gaps = 4/195 (2%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           FN +  ++  P   + Y+V +  L    Q    +QL + MVS     D + Y+ ++    
Sbjct: 175 FNEMIDRDFHP-NLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFS 233

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
                D A+    RM   G +PD VTY+ ++D   K G+V++   ++   VA+   P+ +
Sbjct: 234 AAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVV 293

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
            +S L   +  +   D    V++EM     +PN+V YNT++  +    +   A  +F EM
Sbjct: 294 TYSALIGGYCRASRVDEGGKVMREM---ACRPNVVTYNTMIWGLSMVDRNEEAYGMFREM 350

Query: 354 VESGLTPDEKTLTAL 368
            E G  PD +T   L
Sbjct: 351 SECGFVPDARTYRGL 365


>gi|449439615|ref|XP_004137581.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Cucumis sativus]
          Length = 857

 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 97/417 (23%), Positives = 179/417 (42%), Gaps = 71/417 (17%)

Query: 156 NALL-ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMV 214
           NA++ IL    ++ +++  +  +K   ++P +   + + MKS     +     +L N M 
Sbjct: 115 NAIMNILVEYGYFSQAHKVYMRMKDIGIYP-DVYTHTIRMKSFCITGRPTAALRLLNNMP 173

Query: 215 SNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVE 274
               E + ++Y  +I+   + N   EA   F+ M K G+ PD +T++ ++ V  K G V+
Sbjct: 174 GQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQ 233

Query: 275 EVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLL 334
           E   L+ + +  G  P+   F++  +     G  D    +L+ + S G+ P+++ YNTL+
Sbjct: 234 ESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLI 293

Query: 335 EAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD-------------- 380
               K  K   A     +MV SG+ P+E T   +I  + KA   ++              
Sbjct: 294 CGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFI 353

Query: 381 ---------------------ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
                                A+ ++    E  +    ILYNTL+   +  GLV +A +L
Sbjct: 354 PDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQL 413

Query: 420 FEDMK-----------------------LSDY-----------CKPDNYSYTAMLNIYGS 445
            +DM                        LSD            C PD +++  +++ Y  
Sbjct: 414 MKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCK 473

Query: 446 GGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
             N+D AIE+ + M   G+  +V+    L+  L KAR++D++V  F   +++G  P+
Sbjct: 474 QRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPN 530



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 140/317 (44%), Gaps = 37/317 (11%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           I Y+T++    +  L  +A++  + M + G  PD  TY+ +++   K G + +   +   
Sbjct: 392 ILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILND 451

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
            +A G  PD   F+ L   + +  + D    +L  M S G+ P+++ YNTLL  + KA K
Sbjct: 452 AIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARK 511

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM-------------- 388
                  F  M+E G TP+  T   LI+ + K R   +A+EL++ M              
Sbjct: 512 LDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCT 571

Query: 389 ----------------------RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
                                 +E K+     ++N ++N   +   V  AE+LF  M  S
Sbjct: 572 LICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMINAFCEKLNVSMAEKLFHKMGGS 631

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
           D C PDNY+Y  M++ Y   GN+D A     E    G+  +   C  ++ CL    R+ +
Sbjct: 632 D-CAPDNYTYRVMIDSYCKTGNIDLAHTFLLENISKGLVPSFTTCGKVLNCLCVTHRLSE 690

Query: 487 LVRVFGVSIDRGVKPDD 503
            V +  + +  G+ P++
Sbjct: 691 AVVIINLMVQNGIVPEE 707



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 150/326 (46%), Gaps = 7/326 (2%)

Query: 177 IKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ--LANEMVSNEIELDNITYSTIITCAKR 234
           I S+ L P + I YN  +    F +  +L+E     ++MV++ +E +  TY+TII    +
Sbjct: 277 IVSEGLTP-DVISYNTLICG--FCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCK 333

Query: 235 CNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIA 294
             +   A +        G +PDE TYS++++     G +   ++++   +  G+K   I 
Sbjct: 334 AGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIIL 393

Query: 295 FSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMV 354
           ++ L K   + G       ++++M   G  P++  YN ++  + K G    A  + ++ +
Sbjct: 394 YNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAI 453

Query: 355 ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
             G  PD  T   LI  Y K R    A+E+ + M  +    D I YNTLLN       ++
Sbjct: 454 AKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLD 513

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
                F+ M L   C P+  +Y  ++  +     V  A+ELF+EM   G+  +++    L
Sbjct: 514 NVVDTFKAM-LEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTL 572

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVK 500
           I  L     +D    +F V+I++  K
Sbjct: 573 ICGLCSNGELDKAYELF-VTIEKEYK 597



 Score = 89.0 bits (219), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 81/344 (23%), Positives = 146/344 (42%), Gaps = 9/344 (2%)

Query: 161 LNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSN-EIE 219
           LN+LK        FN +K+++ F      Y   ++ L    +F+ +E +  EM  N + +
Sbjct: 21  LNALKM-------FNQVKTEDGFKHTLETYKCMIEKLGLHGKFEAMEDVLAEMRKNVDSK 73

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
           +    Y  I+    R     EA+  FERM      P   +Y+AI+++  + G   +   +
Sbjct: 74  MLEGVYIGIMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKV 133

Query: 280 YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
           Y R    G  PD    ++  K F  +G       +L  M   G + N V Y  ++    K
Sbjct: 134 YMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYK 193

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
                 A  LFDEM++ G+ PD  T   LI +  K    +++ +L+ ++ +     +   
Sbjct: 194 ENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFT 253

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           +N  +      G ++EA RL E + +S+   PD  SY  ++  +     +  A     +M
Sbjct: 254 FNIFIQGLCRKGAIDEAARLLESI-VSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKM 312

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
              GV  N      +I    KA  + +  ++   ++ +G  PD+
Sbjct: 313 VNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDE 356


>gi|357499033|ref|XP_003619805.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494820|gb|AES76023.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 548

 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 93/393 (23%), Positives = 176/393 (44%), Gaps = 23/393 (5%)

Query: 142 LRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGR 201
           +R  +++ H+   EN L+             F + +  +N  P  T  +N  + SL   +
Sbjct: 28  IRLFSQLHHKQDEENNLI-----------SSFNHLLLHKNPTP-PTFQFNKILSSLVKAK 75

Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS 261
                  L  +M  N IE D  T++ +I C  +  L   +   F ++ K G  P  +T++
Sbjct: 76  HHSTALSLHQQMELNGIESDFFTFNILINCFSQLGLNSLSFSIFAKILKKGYHPTAITFN 135

Query: 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
            ++      G + + L  +++ VA G+  D +++  L     + G       +L+ +   
Sbjct: 136 TLIKGLCLKGHIHQALHFHDKVVAQGFHLDQVSYGTLINGLCKVGRITAALQLLKRVDGK 195

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
            VQPN V+YN +++ M KA     A  L+ +MV   + PD  T  ALI  +        A
Sbjct: 196 LVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRICPDVFTYNALISGFSAVSKLNYA 255

Query: 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
           ++L+ +M++     +   +N L++     G V +A+ +   M + D  KPD  +Y ++++
Sbjct: 256 IDLFNKMKKENINPNVYTFNILVDGFCKEGKVNDAKVVLAIM-MKDDIKPDVVTYNSLMD 314

Query: 442 IYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
            Y S   V+ A ++F+ M+  GV  NV   T ++    K + +D+ + +F     R + P
Sbjct: 315 GYCSINKVNKAKDIFDSMASGGVIANVQIYTTMVNGFCKIKMVDEAINLFEEMRCRKIIP 374

Query: 502 D--------DRLC--GCLLSVVSLCETSEDVGK 524
           +        D LC  G +   + L +   D G+
Sbjct: 375 NVVTYSSLIDGLCKLGRIFYALKLVDEMHDRGQ 407



 Score =  112 bits (280), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 77/340 (22%), Positives = 168/340 (49%), Gaps = 12/340 (3%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSL-RFGR---QFQLIEQLANEMVSNEIELDNI 223
            ++  F + + +Q  F ++ + Y   +  L + GR     QL++++  ++V    + + +
Sbjct: 148 HQALHFHDKVVAQG-FHLDQVSYGTLINGLCKVGRITAALQLLKRVDGKLV----QPNAV 202

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
            Y+ II    +  L ++A + + +M    + PD  TY+A++  ++   K+   + L+ + 
Sbjct: 203 MYNMIIDNMCKAKLVNDAFDLYSQMVAKRICPDVFTYNALISGFSAVSKLNYAIDLFNKM 262

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
                 P+   F++L   F + G  +  + VL  M    ++P++V YN+L++      K 
Sbjct: 263 KKENINPNVYTFNILVDGFCKEGKVNDAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINKV 322

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
             A+ +FD M   G+  + +  T ++  + K +   +A+ L+E MR  K   + + Y++L
Sbjct: 323 NKAKDIFDSMASGGVIANVQIYTTMVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSSL 382

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDN-YSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
           ++    +G +  A +L ++M   D  +P N  +Y+++L+      +VD AI L   + + 
Sbjct: 383 IDGLCKLGRIFYALKLVDEMH--DRGQPPNIVTYSSILDALCKNHHVDKAIALLTNLKDQ 440

Query: 463 GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           G+  ++   T LI+ L ++ R++D   VF   + +G   D
Sbjct: 441 GIRPDMYTYTILIKGLCQSGRLEDAQNVFEDLLVKGYNLD 480



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/195 (22%), Positives = 95/195 (48%), Gaps = 1/195 (0%)

Query: 164 LKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNI 223
           +K   ++   F  ++ + + P    + ++     + GR F  + +L +EM       + +
Sbjct: 354 IKMVDEAINLFEEMRCRKIIPNVVTYSSLIDGLCKLGRIFYAL-KLVDEMHDRGQPPNIV 412

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           TYS+I+    + +  D+AI     +   G+ PD  TY+ ++    +SG++E+  +++E  
Sbjct: 413 TYSSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTILIKGLCQSGRLEDAQNVFEDL 472

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
           +  G+  D  A++V+ + F + G +D    +L +M+  G  PN   Y  ++ ++ +  + 
Sbjct: 473 LVKGYNLDVYAYTVMIQGFCDKGFFDKALALLSKMEDNGCIPNAKTYELVILSLFEKDEN 532

Query: 344 GLARSLFDEMVESGL 358
             A  L  EM+  GL
Sbjct: 533 DTAEKLLREMIVRGL 547


>gi|326533642|dbj|BAK05352.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 160/335 (47%), Gaps = 9/335 (2%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           K+   F+ +  Q + P + + YN+ + +L   R     E +  +M ++  + D +TYS +
Sbjct: 283 KACSLFHEMTRQGVKP-DVVTYNLIIDALCKARAMDKAELVLRQMTTDGAQPDTVTYSCM 341

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
           I          EA + F  M K GL+P+ VT ++ L    K G+ +E    ++   A G 
Sbjct: 342 IHGYATLGRLKEAAKMFREMKKRGLIPNIVTCNSFLASLCKHGRSKEAAEFFDSMTAKGH 401

Query: 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348
           KPD  ++  L   +   G +  +  +   MKS G+  N  V+  L+ A  K G    A  
Sbjct: 402 KPDIFSYCTLLHGYASEGCFADMIGLFNSMKSNGIAANCHVFTILIHAYAKRGMVDDAML 461

Query: 349 LFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL-NMC 407
           +F EM + G++PD  T + +I  + +     DA+E + +M       +  +Y++++   C
Sbjct: 462 IFTEMQQQGVSPDVVTYSTVISTFSRMGRLTDAMEKFNQMVARGIQPNTAVYSSIIQGFC 521

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG---- 463
              GLV +A+ L  +M      +PD   +++++N     G V +A ++F+  +++G    
Sbjct: 522 MHGGLV-KAKELVSEMINKGIPRPDIVFFSSVINSLCKDGRVMDAHDIFDLATDIGERPG 580

Query: 464 -VAIN-VMGCTCLIQCLGKARRIDDLVRVFGVSID 496
            +  N ++   CL+  + KA +I D + V GV  D
Sbjct: 581 VITFNSLIDGYCLVGKMDKAFKILDAMEVVGVEPD 615



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 109/445 (24%), Positives = 198/445 (44%), Gaps = 63/445 (14%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS-LYER 282
           TY+ ++ C  R    D  +  F  + +TGL  D++T + +L     + + EE ++ L  R
Sbjct: 159 TYNILMDCCCRARRPDLGLALFGCILRTGLKMDQITANTLLKCLCYANRTEEAVNVLLHR 218

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG--VQPNLVVYNTLLEAMGKA 340
               G  P+ +++S++ K   ++        +LQ M   G    P++V Y+T++      
Sbjct: 219 MSELGCVPNAVSYSIVLKALCDNSMSQRALDLLQMMAKQGGACSPDVVAYSTVIHGFFNE 278

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G+ G A SLF EM   G+ PD  T   +I    KAR    A  +  +M  +    D + Y
Sbjct: 279 GETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTDGAQPDTVTY 338

Query: 401 NTLLNMCADIGLVEEAERLFEDMK--------------LSDYC----------------- 429
           + +++  A +G ++EA ++F +MK              L+  C                 
Sbjct: 339 SCMIHGYATLGRLKEAAKMFREMKKRGLIPNIVTCNSFLASLCKHGRSKEAAEFFDSMTA 398

Query: 430 ---KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
              KPD +SY  +L+ Y S G   + I LF  M   G+A N    T LI    K   +DD
Sbjct: 399 KGHKPDIFSYCTLLHGYASEGCFADMIGLFNSMKSNGIAANCHVFTILIHAYAKRGMVDD 458

Query: 487 LVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDN 546
            + +F     +GV PD      +++  ++  T   +G++   +++ N ++VA    I+ N
Sbjct: 459 AMLIFTEMQQQGVSPD------VVTYSTVISTFSRMGRLTDAMEKFN-QMVA--RGIQPN 509

Query: 547 STGFENIKEEF---RNVIKDTEVDAR-------RP----FCNCLIDICRNRNLNERAHEL 592
           +  + +I + F     ++K  E+ +        RP    F + +  +C++  + + AH++
Sbjct: 510 TAVYSSIIQGFCMHGGLVKAKELVSEMINKGIPRPDIVFFSSVINSLCKDGRVMD-AHDI 568

Query: 593 LYLGTLYGLYPGL--HNKTLDEWSL 615
             L T  G  PG+   N  +D + L
Sbjct: 569 FDLATDIGERPGVITFNSLIDGYCL 593



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/324 (25%), Positives = 153/324 (47%), Gaps = 10/324 (3%)

Query: 185 METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIEL----DNITYSTIITCAKRCNLFDE 240
           M+ I  N  +K L +  +    E+  N ++    EL    + ++YS ++      ++   
Sbjct: 190 MDQITANTLLKCLCYANR---TEEAVNVLLHRMSELGCVPNAVSYSIVLKALCDNSMSQR 246

Query: 241 AIEWFERMYKTG--LMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
           A++  + M K G    PD V YS ++  +   G+  +  SL+      G KPD + ++++
Sbjct: 247 ALDLLQMMAKQGGACSPDVVAYSTVIHGFFNEGETGKACSLFHEMTRQGVKPDVVTYNLI 306

Query: 299 GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
                ++   D    VL++M + G QP+ V Y+ ++      G+   A  +F EM + GL
Sbjct: 307 IDALCKARAMDKAELVLRQMTTDGAQPDTVTYSCMIHGYATLGRLKEAAKMFREMKKRGL 366

Query: 359 TPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAER 418
            P+  T  + +    K   +K+A E ++ M       D   Y TLL+  A  G   +   
Sbjct: 367 IPNIVTCNSFLASLCKHGRSKEAAEFFDSMTAKGHKPDIFSYCTLLHGYASEGCFADMIG 426

Query: 419 LFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL 478
           LF  MK S+    + + +T +++ Y   G VD+A+ +F EM + GV+ +V+  + +I   
Sbjct: 427 LFNSMK-SNGIAANCHVFTILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISTF 485

Query: 479 GKARRIDDLVRVFGVSIDRGVKPD 502
            +  R+ D +  F   + RG++P+
Sbjct: 486 SRMGRLTDAMEKFNQMVARGIQPN 509



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 142/293 (48%), Gaps = 5/293 (1%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEI-ELDNITYSTIITCA 232
           FN + ++ + P   ++ ++       G   +  ++L +EM++  I   D + +S++I   
Sbjct: 498 FNQMVARGIQPNTAVYSSIIQGFCMHGGLVK-AKELVSEMINKGIPRPDIVFFSSVINSL 556

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +     +A + F+     G  P  +T+++++D Y   GK+++   + +     G +PD 
Sbjct: 557 CKDGRVMDAHDIFDLATDIGERPGVITFNSLIDGYCLVGKMDKAFKILDAMEVVGVEPDI 616

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           + ++ L   + ++G  +    + +EM+  GV+PN V Y  +L  + +AG+   AR  F E
Sbjct: 617 VTYNTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHE 676

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M+ESG T        ++    +   A +A+ L++++          + NT++N    +  
Sbjct: 677 MIESGTTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMNVKFSITILNTMINAMYKVQR 736

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAM-LNIYGSGGNVDNAIELFEEMSELGV 464
            EEA+ LF  +  S    P+  +Y  M +N+   GG V++A  +F  M + G+
Sbjct: 737 KEEAKELFATISASGLL-PNESTYGVMIINLLKDGG-VEDANNMFSSMEKSGI 787



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 88/345 (25%), Positives = 148/345 (42%), Gaps = 19/345 (5%)

Query: 170 SYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTII 229
           +   F  ++ Q + P    +  V     R GR    +E+  N+MV+  I+ +   YS+II
Sbjct: 459 AMLIFTEMQQQGVSPDVVTYSTVISTFSRMGRLTDAMEKF-NQMVARGIQPNTAVYSSII 517

Query: 230 TCAKRCNLFDEAIEWFERMYKTGL-MPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
                     +A E    M   G+  PD V +S++++   K G+V +   +++     G 
Sbjct: 518 QGFCMHGGLVKAKELVSEMINKGIPRPDIVFFSSVINSLCKDGRVMDAHDIFDLATDIGE 577

Query: 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348
           +P  I F+ L   +   G  D    +L  M+ +GV+P++V YNTLL+   K G+     +
Sbjct: 578 RPGVITFNSLIDGYCLVGKMDKAFKILDAMEVVGVEPDIVTYNTLLDGYFKNGRINDGLT 637

Query: 349 LFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL---- 404
           LF EM   G+ P+  T   ++    +A     A + +  M E+   +   +Y  +L    
Sbjct: 638 LFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYGIILGGLC 697

Query: 405 -NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYT---AMLNIYGSGGNVDNAIELFEEMS 460
            N CAD     EA  LF+ +   +      +S T    M+N        + A ELF  +S
Sbjct: 698 RNNCAD-----EAIILFQKLGTMNV----KFSITILNTMINAMYKVQRKEEAKELFATIS 748

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRL 505
             G+  N      +I  L K   ++D   +F      G+ P  RL
Sbjct: 749 ASGLLPNESTYGVMIINLLKDGGVEDANNMFSSMEKSGIVPGSRL 793



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 87/188 (46%), Gaps = 2/188 (1%)

Query: 325 PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALE- 383
           P    YN L++   +A +P L  +LF  ++ +GL  D+ T   L+K    A   ++A+  
Sbjct: 155 PTFCTYNILMDCCCRARRPDLGLALFGCILRTGLKMDQITANTLLKCLCYANRTEEAVNV 214

Query: 384 LWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM-KLSDYCKPDNYSYTAMLNI 442
           L  RM E     + + Y+ +L    D  + + A  L + M K    C PD  +Y+ +++ 
Sbjct: 215 LLHRMSELGCVPNAVSYSIVLKALCDNSMSQRALDLLQMMAKQGGACSPDVVAYSTVIHG 274

Query: 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           + + G    A  LF EM+  GV  +V+    +I  L KAR +D    V       G +PD
Sbjct: 275 FFNEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTDGAQPD 334

Query: 503 DRLCGCLL 510
                C++
Sbjct: 335 TVTYSCMI 342



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 101/229 (44%), Gaps = 35/229 (15%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           IT++++I         D+A +  + M   G+ PD VTY+ +LD Y K+G++ + L+L+  
Sbjct: 582 ITFNSLIDGYCLVGKMDKAFKILDAMEVVGVEPDIVTYNTLLDGYFKNGRINDGLTLFRE 641

Query: 283 GVASGWKPDPIAFSVL-------GKMFG---------ESGD------------------- 307
               G KP+ + + ++       G+            ESG                    
Sbjct: 642 MQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNC 701

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
            D    + Q++ ++ V+ ++ + NT++ AM K  +   A+ LF  +  SGL P+E T   
Sbjct: 702 ADEAIILFQKLGTMNVKFSITILNTMINAMYKVQRKEEAKELFATISASGLLPNESTYGV 761

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEA 416
           +I    K    +DA  ++  M ++       L N ++ M  + G + +A
Sbjct: 762 MIINLLKDGGVEDANNMFSSMEKSGIVPGSRLLNRIIRMLLEKGEIAKA 810


>gi|255660842|gb|ACU25590.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
          Length = 418

 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 90/339 (26%), Positives = 163/339 (48%), Gaps = 18/339 (5%)

Query: 138 EEAFLRAITE-----------IPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPME 186
           E  FLR   E           +P    R+  L  L  LK+++  + F+  I     +P  
Sbjct: 78  ESGFLRDALECFRLSREHKFWVPFDTCRK-VLDHLMKLKYFKLVWGFYKEILECG-YPAS 135

Query: 187 TIFYNVTMKSLRFGRQFQL-IEQLANEMVSN-EIELDNITYSTIITCAKRCNLFDEAIEW 244
             F+N+ M   RF ++ ++ + QL  + ++   ++   ++++T++    +  + DE    
Sbjct: 136 LYFFNILMH--RFCKEGEIRLAQLVFDAITKWGLKPSVVSFNTLMNGYIKMGILDEGFRL 193

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
              M+ +G  PD  TYS +++   K  K++E   L++  +  G  P+ + F+ L     +
Sbjct: 194 KNAMHASGAQPDVYTYSVLINGLCKESKMDEAHELFDEMLEKGLVPNGVTFTTLIDGHCK 253

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
           +G  D    + +++ S G+ P+L+ YNTL+    K G     R L DEM   GL PD+ T
Sbjct: 254 NGKLDLAMEIYKQILSQGLSPDLITYNTLIYGFCKKGDLKQTRDLIDEMSMKGLKPDKIT 313

Query: 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
            T LI    K    + A E  ++M E    +D ++Y  L++     G   +AE++  +M 
Sbjct: 314 YTTLIDGSCKEGDLETAFEYRKKMIEENIRLDDVVYTALISGLCKEGRSVDAEKMLREM- 372

Query: 425 LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           LS   KPD+ +YT ++N +   G+V+   +L +EM   G
Sbjct: 373 LSVGLKPDSGTYTIVMNEFCKNGDVNTGSKLLKEMQRDG 411



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 119/243 (48%), Gaps = 1/243 (0%)

Query: 260 YSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMK 319
           ++ ++  + K G++     +++     G KP  ++F+ L   + + G  D    +   M 
Sbjct: 139 FNILMHRFCKEGEIRLAQLVFDAITKWGLKPSVVSFNTLMNGYIKMGILDEGFRLKNAMH 198

Query: 320 SLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAK 379
           + G QP++  Y+ L+  + K  K   A  LFDEM+E GL P+  T T LI  + K     
Sbjct: 199 ASGAQPDVYTYSVLINGLCKESKMDEAHELFDEMLEKGLVPNGVTFTTLIDGHCKNGKLD 258

Query: 380 DALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAM 439
            A+E+++++       D I YNTL+      G +++   L ++M +    KPD  +YT +
Sbjct: 259 LAMEIYKQILSQGLSPDLITYNTLIYGFCKKGDLKQTRDLIDEMSMKGL-KPDKITYTTL 317

Query: 440 LNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGV 499
           ++     G+++ A E  ++M E  + ++ +  T LI  L K  R  D  ++    +  G+
Sbjct: 318 IDGSCKEGDLETAFEYRKKMIEENIRLDDVVYTALISGLCKEGRSVDAEKMLREMLSVGL 377

Query: 500 KPD 502
           KPD
Sbjct: 378 KPD 380



 Score = 59.7 bits (143), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/188 (21%), Positives = 81/188 (43%), Gaps = 1/188 (0%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F+ +  + L P    F  +     + G+   L  ++  +++S  +  D ITY+T+I   
Sbjct: 228 LFDEMLEKGLVPNGVTFTTLIDGHCKNGK-LDLAMEIYKQILSQGLSPDLITYNTLIYGF 286

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +     +  +  + M   GL PD++TY+ ++D   K G +E      ++ +    + D 
Sbjct: 287 CKKGDLKQTRDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKKMIEENIRLDD 346

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           + ++ L     + G       +L+EM S+G++P+   Y  ++    K G       L  E
Sbjct: 347 VVYTALISGLCKEGRSVDAEKMLREMLSVGLKPDSGTYTIVMNEFCKNGDVNTGSKLLKE 406

Query: 353 MVESGLTP 360
           M   G  P
Sbjct: 407 MQRDGHVP 414



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 77/155 (49%), Gaps = 1/155 (0%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           +  I SQ L P + I YN  +         +    L +EM    ++ D ITY+T+I  + 
Sbjct: 264 YKQILSQGLSP-DLITYNTLIYGFCKKGDLKQTRDLIDEMSMKGLKPDKITYTTLIDGSC 322

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
           +    + A E+ ++M +  +  D+V Y+A++    K G+  +   +    ++ G KPD  
Sbjct: 323 KEGDLETAFEYRKKMIEENIRLDDVVYTALISGLCKEGRSVDAEKMLREMLSVGLKPDSG 382

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
            ++++   F ++GD +    +L+EM+  G  P++V
Sbjct: 383 TYTIVMNEFCKNGDVNTGSKLLKEMQRDGHVPSVV 417


>gi|218200855|gb|EEC83282.1| hypothetical protein OsI_28637 [Oryza sativa Indica Group]
          Length = 662

 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 74/270 (27%), Positives = 134/270 (49%), Gaps = 1/270 (0%)

Query: 195 KSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLM 254
           K+L  G+  +   ++   M++  IELD+ITY+ +I    + +  +EAI+    M + G  
Sbjct: 247 KTLNKGKYMKEATKVIQTMLNKGIELDSITYNIMIRGCCKDSKMEEAIKLHGDMTRRGFK 306

Query: 255 PDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYV 314
           PD  T++ +L  Y   GK+EE   L ++    G +PD +++  +     ++ D    +  
Sbjct: 307 PDLFTFNTLLHAYCNLGKMEETFHLLDQMKTEGLQPDIVSYGTIIDGHCKAKDIRKAKEY 366

Query: 315 LQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK 374
           L E+   G++PN+ +YN L+   G+ G    A    + M  +G+ P   T  +L+     
Sbjct: 367 LTELMDRGLKPNVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQPTNVTYGSLMYWMCH 426

Query: 375 ARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNY 434
           A   ++A  ++ + REN   +  I Y  ++     +G + EA   FE+M+ S    P+  
Sbjct: 427 AGLVEEAKTIFSQARENNVDLGVIGYTIMIQGYCKLGKMVEAVAYFEEMR-SRGISPNKL 485

Query: 435 SYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
           +YT ++  Y   GN + A +LF+EM   GV
Sbjct: 486 TYTTLMYAYSKSGNSEEASKLFDEMVGSGV 515



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 142/302 (47%), Gaps = 6/302 (1%)

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           EA +  + M   G+  D +TY+ ++    K  K+EE + L+      G+KPD   F+ L 
Sbjct: 257 EATKVIQTMLNKGIELDSITYNIMIRGCCKDSKMEEAIKLHGDMTRRGFKPDLFTFNTLL 316

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
             +   G  +   ++L +MK+ G+QP++V Y T+++   KA     A+    E+++ GL 
Sbjct: 317 HAYCNLGKMEETFHLLDQMKTEGLQPDIVSYGTIIDGHCKAKDIRKAKEYLTELMDRGLK 376

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
           P+     ALI  YG+      A++  E M+ N      + Y +L+      GLVEEA+ +
Sbjct: 377 PNVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQPTNVTYGSLMYWMCHAGLVEEAKTI 436

Query: 420 FEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479
           F   + ++        YT M+  Y   G +  A+  FEEM   G++ N +  T L+    
Sbjct: 437 FSQARENN-VDLGVIGYTIMIQGYCKLGKMVEAVAYFEEMRSRGISPNKLTYTTLMYAYS 495

Query: 480 KARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAF 539
           K+   ++  ++F   +  GV PD+   G L++       SE  GK     Q+ +  L   
Sbjct: 496 KSGNSEEASKLFDEMVGSGVIPDNITYGTLIA-----RCSEKGGKTTQYGQELHCDLSKL 550

Query: 540 LN 541
           L+
Sbjct: 551 LS 552



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/333 (22%), Positives = 154/333 (46%), Gaps = 19/333 (5%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           + YNV M +L    + +   +L   M    +    +T+  +I    R   F E     + 
Sbjct: 47  VTYNVLMDALCKSGRVEEAFRLKGRMEQGGMTPSVVTFGILINGLARGERFGEVGIVLQE 106

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M + G+ P+EV Y+ ++  + + G   + L L++  V    KP  + ++++ K   + G+
Sbjct: 107 MEQLGVSPNEVIYNELIGWHCRKGHCSQALRLFDEMVLKKMKPTAVTYNLIAKALCKEGE 166

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLE-AMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
            +    +L++M S+G+  +  ++NT++   + +  +     S+ +EMV  G+ P++  +T
Sbjct: 167 MERAERILEDMLSIGMTVHCGLFNTVVAWLLQRTRRLESVVSITNEMVTRGMRPNDPLMT 226

Query: 367 ALI-----------------KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCAD 409
           A +                 K   K ++ K+A ++ + M      +D I YN ++  C  
Sbjct: 227 ACMRELCKGGKHQEAVGIWFKTLNKGKYMKEATKVIQTMLNKGIELDSITYNIMIRGCCK 286

Query: 410 IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVM 469
              +EEA +L  DM    + KPD +++  +L+ Y + G ++    L ++M   G+  +++
Sbjct: 287 DSKMEEAIKLHGDMTRRGF-KPDLFTFNTLLHAYCNLGKMEETFHLLDQMKTEGLQPDIV 345

Query: 470 GCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
               +I    KA+ I          +DRG+KP+
Sbjct: 346 SYGTIIDGHCKAKDIRKAKEYLTELMDRGLKPN 378



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/316 (25%), Positives = 137/316 (43%), Gaps = 39/316 (12%)

Query: 215 SNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVE 274
           S  + L+  +Y+ +I    +    D   E    +++ GL P  VTY+ ++D   KSG+VE
Sbjct: 4   SRNVALNEYSYTAMIKALCKAGKVDAGFEMLAELWRAGLQPTVVTYNVLMDALCKSGRVE 63

Query: 275 EVLSLYERGVASGWKPDPIAFSVL------GKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           E   L  R    G  P  + F +L      G+ FGE G       VLQEM+ LGV PN V
Sbjct: 64  EAFRLKGRMEQGGMTPSVVTFGILINGLARGERFGEVG------IVLQEMEQLGVSPNEV 117

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
           +YN L+    + G    A  LFDEMV   + P   T      +  KA   +  +E  ER+
Sbjct: 118 IYNELIGWHCRKGHCSQALRLFDEMVLKKMKPTAVTYN----LIAKALCKEGEMERAERI 173

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY-----CKPDNYSYTAMLNIY 443
            E+   +   ++  L N      L++   RL   + +++       +P++   TA +   
Sbjct: 174 LEDMLSIGMTVHCGLFNTVVAW-LLQRTRRLESVVSITNEMVTRGMRPNDPLMTACMREL 232

Query: 444 GSGGNVDNAI-----------------ELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
             GG    A+                 ++ + M   G+ ++ +    +I+   K  ++++
Sbjct: 233 CKGGKHQEAVGIWFKTLNKGKYMKEATKVIQTMLNKGIELDSITYNIMIRGCCKDSKMEE 292

Query: 487 LVRVFGVSIDRGVKPD 502
            +++ G    RG KPD
Sbjct: 293 AIKLHGDMTRRGFKPD 308



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 124/258 (48%), Gaps = 5/258 (1%)

Query: 185 METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNL--FDEAI 242
           +++I YN+ ++      + +   +L  +M     + D  T++T++     CNL   +E  
Sbjct: 272 LDSITYNIMIRGCCKDSKMEEAIKLHGDMTRRGFKPDLFTFNTLL--HAYCNLGKMEETF 329

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
              ++M   GL PD V+Y  I+D + K+  + +        +  G KP+   ++ L   +
Sbjct: 330 HLLDQMKTEGLQPDIVSYGTIIDGHCKAKDIRKAKEYLTELMDRGLKPNVFIYNALIGGY 389

Query: 303 GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
           G +GD  G    ++ MKS G+QP  V Y +L+  M  AG    A+++F +  E+ +    
Sbjct: 390 GRNGDISGAIDAVETMKSNGIQPTNVTYGSLMYWMCHAGLVEEAKTIFSQARENNVDLGV 449

Query: 363 KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED 422
              T +I+ Y K     +A+  +E MR      + + Y TL+   +  G  EEA +LF++
Sbjct: 450 IGYTIMIQGYCKLGKMVEAVAYFEEMRSRGISPNKLTYTTLMYAYSKSGNSEEASKLFDE 509

Query: 423 MKLSDYCKPDNYSYTAML 440
           M  S    PDN +Y  ++
Sbjct: 510 MVGSGVI-PDNITYGTLI 526



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 53/242 (21%), Positives = 99/242 (40%), Gaps = 38/242 (15%)

Query: 319 KSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWA 378
           +S  V  N   Y  +++A+ KAGK      +  E+  +GL P   T   L+    K+   
Sbjct: 3   ESRNVALNEYSYTAMIKALCKAGKVDAGFEMLAELWRAGLQPTVVTYNVLMDALCKSGRV 62

Query: 379 KDALELWERMRENKWPMDFILYNTLLNMCA------DIGLV------------------- 413
           ++A  L  RM +       + +  L+N  A      ++G+V                   
Sbjct: 63  EEAFRLKGRMEQGGMTPSVVTFGILINGLARGERFGEVGIVLQEMEQLGVSPNEVIYNEL 122

Query: 414 ----------EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
                      +A RLF++M L    KP   +Y  +       G ++ A  + E+M  +G
Sbjct: 123 IGWHCRKGHCSQALRLFDEMVLKKM-KPTAVTYNLIAKALCKEGEMERAERILEDMLSIG 181

Query: 464 VAINV-MGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRL-CGCLLSVVSLCETSED 521
           + ++  +  T +   L + RR++ +V +    + RG++P+D L   C+  +    +  E 
Sbjct: 182 MTVHCGLFNTVVAWLLQRTRRLESVVSITNEMVTRGMRPNDPLMTACMRELCKGGKHQEA 241

Query: 522 VG 523
           VG
Sbjct: 242 VG 243



 Score = 44.7 bits (104), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 2/114 (1%)

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           + YSYTAM+      G VD   E+  E+   G+   V+    L+  L K+ R+++  R+ 
Sbjct: 10  NEYSYTAMIKALCKAGKVDAGFEMLAELWRAGLQPTVVTYNVLMDALCKSGRVEEAFRLK 69

Query: 492 GVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ--ANPKLVAFLNLI 543
           G     G+ P     G L++ ++  E   +VG V+  ++Q   +P  V +  LI
Sbjct: 70  GRMEQGGMTPSVVTFGILINGLARGERFGEVGIVLQEMEQLGVSPNEVIYNELI 123


>gi|297828900|ref|XP_002882332.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328172|gb|EFH58591.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 790

 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 87/338 (25%), Positives = 154/338 (45%), Gaps = 34/338 (10%)

Query: 198 RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPD- 256
           RFG   ++  QL  EM+   + +D  T++ +I    +     EA ++  +M + GL PD 
Sbjct: 169 RFGLVDEM-NQLYTEMLEEFVSMDIYTFNLMINVYCKMGFVKEAKQFMCKMIQAGLSPDY 227

Query: 257 ------------------------------EVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
                                         EV+Y+ ++    ++G+++E +SL+ R    
Sbjct: 228 FTSTSFILGYCRSKDVDSAFRVFEEMPNRNEVSYNQLIHGLCEAGRIDEAVSLFVRMKDD 287

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
              P+   ++ L K       +  +  +L EM    + P+L+ YN+L+    +AG    A
Sbjct: 288 CCYPNVYTYTALIKGLCRKNVHKAMG-LLDEMLERNLVPDLITYNSLIAGQCRAGHLDSA 346

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
             L   M E GL PD++T    I    K+   ++A  L++ + E     + I+Y+ L++ 
Sbjct: 347 YRLLSLMKERGLVPDQRTYGCFIDFLCKSNRVEEARRLFDSLTEEGVSANVIMYSVLIDG 406

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
              +G V+EA  LFE M LS  C P+ Y++ A+++   S GN+  A+ LF++M ++G+  
Sbjct: 407 YCKVGKVDEAGCLFEKM-LSKNCSPNAYTFNALIHGLCSAGNLKEALSLFDQMVKMGLKP 465

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR 504
            V     LI  + K    DD  +     +  G KP  R
Sbjct: 466 TVYTFNILIGRMLKQGDFDDAHKCLQKMMSSGEKPVAR 503



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/251 (29%), Positives = 119/251 (47%), Gaps = 1/251 (0%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L +EM+   +  D ITY+++I    R    D A      M + GL+PD+ TY   +D   
Sbjct: 314 LLDEMLERNLVPDLITYNSLIAGQCRAGHLDSAYRLLSLMKERGLVPDQRTYGCFIDFLC 373

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           KS +VEE   L++     G   + I +SVL   + + G  D    + ++M S    PN  
Sbjct: 374 KSNRVEEARRLFDSLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSKNCSPNAY 433

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            +N L+  +  AG    A SLFD+MV+ GL P   T   LI    K     DA +  ++M
Sbjct: 434 TFNALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTFNILIGRMLKQGDFDDAHKCLQKM 493

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
             +        YN  + +    G V+EAE +   MK  +   PD+++YT+++  YG  G 
Sbjct: 494 MSSGEKPVARTYNAFIEVYCSAGKVQEAEDMMVQMK-EEGVPPDDFTYTSLIKAYGKLGL 552

Query: 449 VDNAIELFEEM 459
             +A ++ + M
Sbjct: 553 TYSAFDVLKSM 563



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 96/374 (25%), Positives = 160/374 (42%), Gaps = 39/374 (10%)

Query: 170 SYFFFNWIKSQNLFPME---TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           +Y   + +K + L P +     F +   KS R     +L + L  E VS  +    I YS
Sbjct: 346 AYRLLSLMKERGLVPDQRTYGCFIDFLCKSNRVEEARRLFDSLTEEGVSANV----IMYS 401

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
            +I    +    DEA   FE+M      P+  T++A++     +G ++E LSL+++ V  
Sbjct: 402 VLIDGYCKVGKVDEAGCLFEKMLSKNCSPNAYTFNALIHGLCSAGNLKEALSLFDQMVKM 461

Query: 287 GWKPDPIAFSVL-GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGL 345
           G KP    F++L G+M  + GD+D     LQ+M S G +P    YN  +E    AGK   
Sbjct: 462 GLKPTVYTFNILIGRML-KQGDFDDAHKCLQKMMSSGEKPVARTYNAFIEVYCSAGKVQE 520

Query: 346 ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405
           A  +  +M E G+ PD+ T T+LIK YGK      A ++ + M +         + +L+ 
Sbjct: 521 AEDMMVQMKEEGVPPDDFTYTSLIKAYGKLGLTYSAFDVLKSMFDADCEPSHHTFLSLIK 580

Query: 406 MCADIGLVEEAE-----------------------------RLFEDMKLSDYCKPDNYSY 436
              D   V E                                LFE+M+    C PD+  Y
Sbjct: 581 QLFDKRYVVEKSGETGVESVSNFGDVPGSNMWKMMEFDIVIELFEEME-KHGCTPDSKCY 639

Query: 437 TAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496
             +++      N+  A++L ++M + G++ + M    +I C  K ++  +   +    I 
Sbjct: 640 EKLISGICKVENLGIALKLLDQMQKEGISPSEMVFNAVISCCCKLQKYGEAANIVEDMIC 699

Query: 497 RGVKPDDRLCGCLL 510
            G  P    C  L+
Sbjct: 700 SGHSPQLEHCKTLI 713



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 136/299 (45%), Gaps = 7/299 (2%)

Query: 205 LIEQLANEMVSNEI-ELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAI 263
            +  +  +M  ++I +L    Y+ ++T   R  L DE  + +  M +  +  D  T++ +
Sbjct: 139 FVSDICRKMSKDDITKLSLKCYNELLTLLARFGLVDEMNQLYTEMLEEFVSMDIYTFNLM 198

Query: 264 LDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGV 323
           ++VY K G V+E      + + +G  PD    +     +  S D D    V +EM +   
Sbjct: 199 INVYCKMGFVKEAKQFMCKMIQAGLSPDYFTSTSFILGYCRSKDVDSAFRVFEEMPN--- 255

Query: 324 QPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALE 383
             N V YN L+  + +AG+   A SLF  M +    P+  T TALIK   +    K A+ 
Sbjct: 256 -RNEVSYNQLIHGLCEAGRIDEAVSLFVRMKDDCCYPNVYTYTALIKGLCRKNVHK-AMG 313

Query: 384 LWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIY 443
           L + M E     D I YN+L+      G ++ A RL   MK      PD  +Y   ++  
Sbjct: 314 LLDEMLERNLVPDLITYNSLIAGQCRAGHLDSAYRLLSLMKERGLV-PDQRTYGCFIDFL 372

Query: 444 GSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
                V+ A  LF+ ++E GV+ NV+  + LI    K  ++D+   +F   + +   P+
Sbjct: 373 CKSNRVEEARRLFDSLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSKNCSPN 431



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 119/257 (46%), Gaps = 2/257 (0%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           TY+ +I    R N+  +A+   + M +  L+PD +TY++++    ++G ++    L    
Sbjct: 295 TYTALIKGLCRKNV-HKAMGLLDEMLERNLVPDLITYNSLIAGQCRAGHLDSAYRLLSLM 353

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
              G  PD   +        +S   +  R +   +   GV  N+++Y+ L++   K GK 
Sbjct: 354 KERGLVPDQRTYGCFIDFLCKSNRVEEARRLFDSLTEEGVSANVIMYSVLIDGYCKVGKV 413

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
             A  LF++M+    +P+  T  ALI     A   K+AL L+++M +         +N L
Sbjct: 414 DEAGCLFEKMLSKNCSPNAYTFNALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTFNIL 473

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           +      G  ++A +  + M +S   KP   +Y A + +Y S G V  A ++  +M E G
Sbjct: 474 IGRMLKQGDFDDAHKCLQKM-MSSGEKPVARTYNAFIEVYCSAGKVQEAEDMMVQMKEEG 532

Query: 464 VAINVMGCTCLIQCLGK 480
           V  +    T LI+  GK
Sbjct: 533 VPPDDFTYTSLIKAYGK 549



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 104/214 (48%), Gaps = 8/214 (3%)

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G  D +  +  EM    V  ++  +N ++    K G    A+    +M+++GL+PD  T 
Sbjct: 171 GLVDEMNQLYTEMLEEFVSMDIYTFNLMINVYCKMGFVKEAKQFMCKMIQAGLSPDYFTS 230

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
           T+ I  Y +++    A  ++E M         + YN L++   + G ++EA  LF  MK 
Sbjct: 231 TSFILGYCRSKDVDSAFRVFEEMPNRNE----VSYNQLIHGLCEAGRIDEAVSLFVRMK- 285

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
            D C P+ Y+YTA++       NV  A+ L +EM E  +  +++    LI    +A  +D
Sbjct: 286 DDCCYPNVYTYTALIKGL-CRKNVHKAMGLLDEMLERNLVPDLITYNSLIAGQCRAGHLD 344

Query: 486 DLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETS 519
              R+  +  +RG+ PD R  GC +    LC+++
Sbjct: 345 SAYRLLSLMKERGLVPDQRTYGCFIDF--LCKSN 376



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 75/348 (21%), Positives = 146/348 (41%), Gaps = 31/348 (8%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F  + S+N  P    F N  +  L      +    L ++MV   ++    T++ +I   
Sbjct: 419 LFEKMLSKNCSPNAYTF-NALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTFNILIGRM 477

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +   FD+A +  ++M  +G  P   TY+A ++VY  +GKV+E   +  +    G  PD 
Sbjct: 478 LKQGDFDDAHKCLQKMMSSGEKPVARTYNAFIEVYCSAGKVQEAEDMMVQMKEEGVPPDD 537

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM-------GKAGKPGL 345
             ++ L K +G+ G       VL+ M     +P+   + +L++ +        K+G+ G+
Sbjct: 538 FTYTSLIKAYGKLGLTYSAFDVLKSMFDADCEPSHHTFLSLIKQLFDKRYVVEKSGETGV 597

Query: 346 AR----------------------SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALE 383
                                    LF+EM + G TPD K    LI    K      AL+
Sbjct: 598 ESVSNFGDVPGSNMWKMMEFDIVIELFEEMEKHGCTPDSKCYEKLISGICKVENLGIALK 657

Query: 384 LWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIY 443
           L ++M++       +++N +++ C  +    EA  + EDM  S +     +  T +  +Y
Sbjct: 658 LLDQMQKEGISPSEMVFNAVISCCCKLQKYGEAANIVEDMICSGHSPQLEHCKTLICGLY 717

Query: 444 GSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
              G  +    +F+++   G   + +    LI  + K   +++  ++F
Sbjct: 718 -EEGETERGNSVFKKLRGCGYNDDEIAWKILIDGMLKQGLVEEFSQLF 764



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 78/188 (41%), Gaps = 37/188 (19%)

Query: 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
           FD  IE FE M K G  PD   Y  ++    K   +   L L                  
Sbjct: 617 FDIVIELFEEMEKHGCTPDSKCYEKLISGICKVENLGIALKL------------------ 658

Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
                            L +M+  G+ P+ +V+N ++    K  K G A ++ ++M+ SG
Sbjct: 659 -----------------LDQMQKEGISPSEMVFNAVISCCCKLQKYGEAANIVEDMICSG 701

Query: 358 LTPD-EKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEA 416
            +P  E   T +  +Y +    +    +++++R   +  D I +  L++     GLVEE 
Sbjct: 702 HSPQLEHCKTLICGLYEEGETERGN-SVFKKLRGCGYNDDEIAWKILIDGMLKQGLVEEF 760

Query: 417 ERLFEDMK 424
            +LFE+M+
Sbjct: 761 SQLFEEME 768


>gi|297795313|ref|XP_002865541.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311376|gb|EFH41800.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 711

 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/269 (28%), Positives = 139/269 (51%), Gaps = 8/269 (2%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLA---NEMVSNEIELDNI 223
           WQK++     +KS  + P +  FYNV + +  FG+ F  ++      + M+S  IE D +
Sbjct: 427 WQKTFQVLKEMKSIGVKP-DRQFYNVVIDT--FGK-FNCLDHAMTTFDRMLSEGIEPDRV 482

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           T++T+I C  +      A E FE M + G +P   TY+ +++ Y    + +++  L  + 
Sbjct: 483 TWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKM 542

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
            + G  P+ +  + L  ++G+SG ++     L+EMKS+G++P+  +YN L+ A  + G  
Sbjct: 543 KSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLS 602

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
             A + F  M   GL P    L +LI  +G+ R   +A  + + M+EN    D + Y TL
Sbjct: 603 EQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTL 662

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPD 432
           +     +   ++   ++E+M +S  CKPD
Sbjct: 663 MKALIRVDKFQKVPGVYEEMIMSG-CKPD 690



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 138/302 (45%), Gaps = 2/302 (0%)

Query: 200 GRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVT 259
           GR  +  E L  E+  + I+     Y+ ++    +     +A      M K G+ PDE T
Sbjct: 320 GRTLE-AEALFEELRQSGIKPRTKAYNALLKGYVKTGPLKDAELMVSEMEKRGVSPDEHT 378

Query: 260 YSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMK 319
           YS ++D Y  +G+ E    + +       +P+   FS L   + + G++     VL+EMK
Sbjct: 379 YSLLIDAYVNAGRWESARIVLKEMETGDVQPNSFVFSRLLAGYRDRGEWQKTFQVLKEMK 438

Query: 320 SLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAK 379
           S+GV+P+   YN +++  GK      A + FD M+  G+ PD  T   LI  + K     
Sbjct: 439 SIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHI 498

Query: 380 DALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAM 439
            A E++E M           YN ++N   D    ++ +RL   MK S    P+  ++T +
Sbjct: 499 VAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMK-SQGILPNVVTHTTL 557

Query: 440 LNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGV 499
           +++YG  G  ++AIE  EEM  +G+  +      LI    +    +  V  F V    G+
Sbjct: 558 VDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGL 617

Query: 500 KP 501
           KP
Sbjct: 618 KP 619



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 87/323 (26%), Positives = 147/323 (45%), Gaps = 5/323 (1%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           T  +II+         EA   FE + ++G+ P    Y+A+L  Y K+G +++   +    
Sbjct: 308 TLVSIISALANSGRTLEAEALFEELRQSGIKPRTKAYNALLKGYVKTGPLKDAELMVSEM 367

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
              G  PD   +S+L   +  +G ++  R VL+EM++  VQPN  V++ LL      G+ 
Sbjct: 368 EKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMETGDVQPNSFVFSRLLAGYRDRGEW 427

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
                +  EM   G+ PD +    +I  +GK      A+  ++RM       D + +NTL
Sbjct: 428 QKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTL 487

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           ++     G    AE +FE M+    C P   +Y  M+N YG     D+   L  +M   G
Sbjct: 488 IDCHCKHGRHIVAEEMFEAMERRG-CLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQG 546

Query: 464 VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVS---LCETSE 520
           +  NV+  T L+   GK+ R +D +         G+KP   +   L++  +   L E + 
Sbjct: 547 ILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAV 606

Query: 521 DVGKVITCLQQANPKLVAFLNLI 543
           +  +V+T      P L+A  +LI
Sbjct: 607 NAFRVMTS-DGLKPSLLALNSLI 628



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 87/350 (24%), Positives = 152/350 (43%), Gaps = 43/350 (12%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           W+ +      +++ ++ P   +F  + +   R   ++Q   Q+  EM S  ++ D   Y+
Sbjct: 392 WESARIVLKEMETGDVQPNSFVFSRL-LAGYRDRGEWQKTFQVLKEMKSIGVKPDRQFYN 450

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK---VEEVLSLYERG 283
            +I    + N  D A+  F+RM   G+ PD VT++ ++D + K G+    EE+    ER 
Sbjct: 451 VVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMER- 509

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
              G  P    ++++   +G+   +D ++ +L +MKS G+ PN+V + TL++  GK+G+ 
Sbjct: 510 --RGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRF 567

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
             A    +EM   GL P      ALI  Y                               
Sbjct: 568 NDAIECLEEMKSVGLKPSSTMYNALINAY------------------------------- 596

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
               A  GL E+A   F  M  SD  KP   +  +++N +G       A  + + M E G
Sbjct: 597 ----AQRGLSEQAVNAFRVMT-SDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKENG 651

Query: 464 VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVV 513
           V  +V+  T L++ L +  +   +  V+   I  G KPD +    L S +
Sbjct: 652 VKPDVVTYTTLMKALIRVDKFQKVPGVYEEMIMSGCKPDRKARSMLRSAL 701



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/335 (23%), Positives = 154/335 (45%), Gaps = 8/335 (2%)

Query: 170 SYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTII 229
           +Y   +W++  NL     + Y++ + +L  GR  +L E     ++S +  L  +TY+ +I
Sbjct: 152 AYAVVSWLQKHNLCFSYELLYSILIHAL--GRSEKLYEAF---LLSQKQTLTPLTYNALI 206

Query: 230 TCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL--SLYERGVASG 287
               R N  ++A+    RM + G   D V YS ++    +  K++ V+   LY+      
Sbjct: 207 GACARNNDIEKALNLISRMRQDGYQSDFVNYSLVIQSLTRCNKIDSVMLQRLYKEIERDK 266

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
            + D    + +   F +SGD      +L   ++ G+        +++ A+  +G+   A 
Sbjct: 267 LELDVQLVNDIIMGFAKSGDPSRALQLLGMAQATGLSAKTATLVSIISALANSGRTLEAE 326

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
           +LF+E+ +SG+ P  K   AL+K Y K    KDA  +   M +     D   Y+ L++  
Sbjct: 327 ALFEELRQSGIKPRTKAYNALLKGYVKTGPLKDAELMVSEMEKRGVSPDEHTYSLLIDAY 386

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
            + G  E A  + ++M+  D  +P+++ ++ +L  Y   G      ++ +EM  +GV  +
Sbjct: 387 VNAGRWESARIVLKEMETGD-VQPNSFVFSRLLAGYRDRGEWQKTFQVLKEMKSIGVKPD 445

Query: 468 VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
                 +I   GK   +D  +  F   +  G++PD
Sbjct: 446 RQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPD 480


>gi|147838532|emb|CAN65388.1| hypothetical protein VITISV_038361 [Vitis vinifera]
          Length = 676

 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 91/356 (25%), Positives = 167/356 (46%), Gaps = 22/356 (6%)

Query: 148 IPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQF-QLI 206
           +PH   +E + ++L        +  FFNW+K+       T  Y + + +L + R F Q I
Sbjct: 140 LPHLGAQEISRVLLRCQSDSFTALSFFNWVKNDLGLRPSTQNYCIIVHTLAWSRNFSQAI 199

Query: 207 EQLAN--EMVSNEIELDNITYSTIITCAKRCN----LFD-------------EAIEWFER 247
           + L    E+V +++  +++ +  +I C + CN    +FD             E +  F R
Sbjct: 200 KFLCELVELVKDDLPGEDV-FKNLILCTEDCNWDPVVFDMLVKAYLRMGRVREGLRSFRR 258

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M + G +P  +T + +L+   K    +    +YE     G  P+   F++L  +  + GD
Sbjct: 259 MLRVGFVPTVITSNYLLNGLLKLNYTDRCWEVYEEMERFGIAPNLYTFNILTHVLCKDGD 318

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
              +   L++M+  G  P++V YNTL+ +  + G+   A  L+  M   G+ PD  + TA
Sbjct: 319 TGKVNKFLEKMEEEGFDPDIVTYNTLINSYCRKGRLDDAFYLYKIMYRRGVVPDLVSYTA 378

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           L+    K    ++A +L+ RM       D + YNTL++     G ++E+  L  DM + +
Sbjct: 379 LMNGLCKEGRVREAHQLFHRMVHRGLSPDIVTYNTLIHGYCKEGKMQESRSLLHDM-IWN 437

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483
              PD+++   ++  YG  G   +A+ L  E+   GV+I+    + LI  L +  R
Sbjct: 438 GISPDSFTCWVLVEGYGKEGKFLSALNLVVELQRFGVSISQDIYSYLIVALCRENR 493



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 134/299 (44%), Gaps = 34/299 (11%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D ++Y+ ++    +     EA + F RM   GL PD VTY+ ++  Y K GK++E  SL 
Sbjct: 372 DLVSYTALMNGLCKEGRVREAHQLFHRMVHRGLSPDIVTYNTLIHGYCKEGKMQESRSLL 431

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
              + +G  PD     VL + +G+ G +     ++ E++  GV  +  +Y+ L+ A+ + 
Sbjct: 432 HDMIWNGISPDSFTCWVLVEGYGKEGKFLSALNLVVELQRFGVSISQDIYSYLIVALCRE 491

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
            +P  A++L + M + G   + +    LIK + +     +AL L   M + +   +   Y
Sbjct: 492 NRPFAAKNLLERMSQDGHKXELEIYNELIKSFCQCDCIAEALLLKMEMVDKEIKPNLATY 551

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSD--------------YCKP--------------- 431
             +J   + +    E E L  +M  S               YC+                
Sbjct: 552 RAVJGCLSRLSRSMEGESLVGEMVASGXLPDLEICRALFYGYCRENDIDKAESLLSFXAK 611

Query: 432 -----DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
                D  S+ A++ I  + G++  ++E+ + M ++G+  N + C  +I  L KARR+D
Sbjct: 612 EFQIHDTESFNALIRITSAKGDIARSLEIQDMMLKMGLLPNPLTCKYVIDGLWKARRVD 670



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 124/273 (45%), Gaps = 11/273 (4%)

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
           ++ E+M + G  PD VTY+ +++ Y + G++++   LY+     G  PD ++++ L    
Sbjct: 324 KFLEKMEEEGFDPDIVTYNTLINSYCRKGRLDDAFYLYKIMYRRGVVPDLVSYTALMNGL 383

Query: 303 GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
            + G       +   M   G+ P++V YNTL+    K GK   +RSL  +M+ +G++PD 
Sbjct: 384 CKEGRVREAHQLFHRMVHRGLSPDIVTYNTLIHGYCKEGKMQESRSLLHDMIWNGISPDS 443

Query: 363 KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEE-----AE 417
            T   L++ YGK      AL L   ++     +   +Y+ L+     + L  E     A+
Sbjct: 444 FTCWVLVEGYGKEGKFLSALNLVVELQRFGVSISQDIYSYLI-----VALCRENRPFAAK 498

Query: 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
            L E M   D  K +   Y  ++  +     +  A+ L  EM +  +  N+     +J C
Sbjct: 499 NLLERMS-QDGHKXELEIYNELIKSFCQCDCIAEALLLKMEMVDKEIKPNLATYRAVJGC 557

Query: 478 LGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
           L +  R  +   + G  +  G  PD  +C  L 
Sbjct: 558 LSRLSRSMEGESLVGEMVASGXLPDLEICRALF 590



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 78/175 (44%), Gaps = 1/175 (0%)

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
           VV++ L++A  + G+       F  M+  G  P   T   L+    K  +     E++E 
Sbjct: 234 VVFDMLVKAYLRMGRVREGLRSFRRMLRVGFVPTVITSNYLLNGLLKLNYTDRCWEVYEE 293

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           M       +   +N L ++    G   +  +  E M+   +  PD  +Y  ++N Y   G
Sbjct: 294 MERFGIAPNLYTFNILTHVLCKDGDTGKVNKFLEKMEEEGF-DPDIVTYNTLINSYCRKG 352

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            +D+A  L++ M   GV  +++  T L+  L K  R+ +  ++F   + RG+ PD
Sbjct: 353 RLDDAFYLYKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQLFHRMVHRGLSPD 407


>gi|15238925|ref|NP_199046.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75154282|sp|Q8L844.1|PP413_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g42310, mitochondrial; Flags: Precursor
 gi|21539517|gb|AAM53311.1| maize crp1 protein-like [Arabidopsis thaliana]
 gi|332007411|gb|AED94794.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 709

 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 85/302 (28%), Positives = 139/302 (46%), Gaps = 2/302 (0%)

Query: 200 GRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVT 259
           GR  +  E L  E+  + I+     Y+ ++    +     +A      M K G+ PDE T
Sbjct: 318 GRTLE-AEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHT 376

Query: 260 YSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMK 319
           YS ++D Y  +G+ E    + +   A   +P+   FS L   F + G++     VL+EMK
Sbjct: 377 YSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMK 436

Query: 320 SLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAK 379
           S+GV+P+   YN +++  GK      A + FD M+  G+ PD  T   LI  + K     
Sbjct: 437 SIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHI 496

Query: 380 DALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAM 439
            A E++E M           YN ++N   D    ++ +RL   MK S    P+  ++T +
Sbjct: 497 VAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMK-SQGILPNVVTHTTL 555

Query: 440 LNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGV 499
           +++YG  G  ++AIE  EEM  +G+  +      LI    +    +  V  F V    G+
Sbjct: 556 VDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGL 615

Query: 500 KP 501
           KP
Sbjct: 616 KP 617



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 77/269 (28%), Positives = 139/269 (51%), Gaps = 8/269 (2%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLA---NEMVSNEIELDNI 223
           WQK++     +KS  + P +  FYNV + +  FG+ F  ++      + M+S  IE D +
Sbjct: 425 WQKTFQVLKEMKSIGVKP-DRQFYNVVIDT--FGK-FNCLDHAMTTFDRMLSEGIEPDRV 480

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           T++T+I C  +      A E FE M + G +P   TY+ +++ Y    + +++  L  + 
Sbjct: 481 TWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKM 540

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
            + G  P+ +  + L  ++G+SG ++     L+EMKS+G++P+  +YN L+ A  + G  
Sbjct: 541 KSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLS 600

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
             A + F  M   GL P    L +LI  +G+ R   +A  + + M+EN    D + Y TL
Sbjct: 601 EQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTL 660

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPD 432
           +     +   ++   ++E+M +S  CKPD
Sbjct: 661 MKALIRVDKFQKVPVVYEEMIMSG-CKPD 688



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 148/323 (45%), Gaps = 5/323 (1%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           T  +II+         EA   FE + ++G+ P    Y+A+L  Y K+G +++  S+    
Sbjct: 306 TLVSIISALADSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEM 365

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
              G  PD   +S+L   +  +G ++  R VL+EM++  VQPN  V++ LL      G+ 
Sbjct: 366 EKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEW 425

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
                +  EM   G+ PD +    +I  +GK      A+  ++RM       D + +NTL
Sbjct: 426 QKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTL 485

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           ++     G    AE +FE M+    C P   +Y  M+N YG     D+   L  +M   G
Sbjct: 486 IDCHCKHGRHIVAEEMFEAMERRG-CLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQG 544

Query: 464 VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVS---LCETSE 520
           +  NV+  T L+   GK+ R +D +         G+KP   +   L++  +   L E + 
Sbjct: 545 ILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAV 604

Query: 521 DVGKVITCLQQANPKLVAFLNLI 543
           +  +V+T      P L+A  +LI
Sbjct: 605 NAFRVMTS-DGLKPSLLALNSLI 626



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 87/350 (24%), Positives = 152/350 (43%), Gaps = 43/350 (12%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           W+ +      +++ ++ P   +F  + +   R   ++Q   Q+  EM S  ++ D   Y+
Sbjct: 390 WESARIVLKEMEAGDVQPNSFVFSRL-LAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYN 448

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK---VEEVLSLYERG 283
            +I    + N  D A+  F+RM   G+ PD VT++ ++D + K G+    EE+    ER 
Sbjct: 449 VVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMER- 507

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
              G  P    ++++   +G+   +D ++ +L +MKS G+ PN+V + TL++  GK+G+ 
Sbjct: 508 --RGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRF 565

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
             A    +EM   GL P      ALI  Y                               
Sbjct: 566 NDAIECLEEMKSVGLKPSSTMYNALINAY------------------------------- 594

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
               A  GL E+A   F  M  SD  KP   +  +++N +G       A  + + M E G
Sbjct: 595 ----AQRGLSEQAVNAFRVMT-SDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKENG 649

Query: 464 VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVV 513
           V  +V+  T L++ L +  +   +  V+   I  G KPD +    L S +
Sbjct: 650 VKPDVVTYTTLMKALIRVDKFQKVPVVYEEMIMSGCKPDRKARSMLRSAL 699



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/335 (23%), Positives = 155/335 (46%), Gaps = 8/335 (2%)

Query: 170 SYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTII 229
           +Y   +W++  NL     + Y++ + +L  GR  +L E     ++S +  L  +TY+ +I
Sbjct: 150 AYAVVSWLQKHNLCFSYELLYSILIHAL--GRSEKLYEAF---LLSQKQTLTPLTYNALI 204

Query: 230 TCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV--LSLYERGVASG 287
               R N  ++A+    +M + G   D V YS ++    +S K++ V  L LY+      
Sbjct: 205 GACARNNDIEKALNLIAKMRQDGYQSDFVNYSLVIQSLTRSNKIDSVMLLRLYKEIERDK 264

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
            + D    + +   F +SGD      +L   ++ G+        +++ A+  +G+   A 
Sbjct: 265 LELDVQLVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSIISALADSGRTLEAE 324

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
           +LF+E+ +SG+ P  +   AL+K Y K    KDA  +   M +     D   Y+ L++  
Sbjct: 325 ALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAY 384

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
            + G  E A  + ++M+  D  +P+++ ++ +L  +   G      ++ +EM  +GV  +
Sbjct: 385 VNAGRWESARIVLKEMEAGD-VQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPD 443

Query: 468 VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
                 +I   GK   +D  +  F   +  G++PD
Sbjct: 444 RQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPD 478


>gi|413922209|gb|AFW62141.1| hypothetical protein ZEAMMB73_911481 [Zea mays]
          Length = 700

 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 88/348 (25%), Positives = 160/348 (45%), Gaps = 6/348 (1%)

Query: 187 TIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
            + YNV +  L R GR  +    L +EM S+ +  D  TYS +     R       +  F
Sbjct: 264 VVTYNVLLSGLCRTGRMDE-TRALMDEMASHSMLPDGFTYSILFDGLTRTGESQTMLSLF 322

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
               K G+M    T S +L+   K GKV +   ++E  V +G  P  + ++ L   + + 
Sbjct: 323 AESLKKGVMLGAYTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTLINGYCQV 382

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
            D  G   + ++MKS  ++P+ + YN L+  + K      A  L  EM +SG+ P  +T 
Sbjct: 383 RDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETF 442

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
             LI  YG A   +    +   M++     D I + +++      G + EA  + +DM  
Sbjct: 443 NTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIY 502

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
            D   P+   Y ++++ Y   G+ + A+ L E+M   GV+ +++    L++ L ++ +ID
Sbjct: 503 KDV-APNAQVYNSIIDAYIESGDTEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSSQID 561

Query: 486 DLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN 533
           +   +     ++G++PD        +++S C    D  K +  LQ+ N
Sbjct: 562 EAEELIYTLRNQGLRPD---VVSYNTIISACCNKGDTDKALELLQEMN 606



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 84/353 (23%), Positives = 166/353 (47%), Gaps = 8/353 (2%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
           +I  N   K  +  +  Q+ E L    V   +    + Y+T+I    +      A   FE
Sbjct: 338 SILLNGLCKDGKVAKAKQVFEML----VHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFE 393

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
           +M    + PD +TY+A+++   K   V +   L      SG  P    F+ L   +G +G
Sbjct: 394 QMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAG 453

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
             +    VL +M+  G++ +++ + ++++A  K GK   A ++ D+M+   + P+ +   
Sbjct: 454 QLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYN 513

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
           ++I  Y ++   + AL L E+M+ +      + YN LL        ++EAE L   ++ +
Sbjct: 514 SIIDAYIESGDTEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLR-N 572

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
              +PD  SY  +++   + G+ D A+EL +EM++ G+   +  C  L+  L  A R+ D
Sbjct: 573 QGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTCHTLVSALASAGRVHD 632

Query: 487 LVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAF 539
           +  ++   + + V+P   + G ++     CE      KV +  ++ + K +AF
Sbjct: 633 MECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDS---KVASLKKEMSEKGIAF 682



 Score =  115 bits (288), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 99/435 (22%), Positives = 194/435 (44%), Gaps = 12/435 (2%)

Query: 178 KSQNLFPMETIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCN 236
           +S+   P +   YNV +  L R G+    + ++ +EMV   +  + ITY+T+I    +  
Sbjct: 185 RSEGAPPPDAFSYNVVIAGLWRSGKGSDAL-KVFDEMVDMGVAPNRITYNTMIDGHVKGG 243

Query: 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS 296
             +      ++M   G  P+ VTY+ +L    ++G+++E  +L +   +    PD   +S
Sbjct: 244 DLEAGFRLRDQMLHDGPKPNVVTYNVLLSGLCRTGRMDETRALMDEMASHSMLPDGFTYS 303

Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356
           +L      +G+   +  +  E    GV       + LL  + K GK   A+ +F+ +V +
Sbjct: 304 ILFDGLTRTGESQTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAKQVFEMLVHT 363

Query: 357 GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEA 416
           GL P       LI  Y + R  + A  ++E+M+      D I YN L+N    + +V +A
Sbjct: 364 GLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKA 423

Query: 417 ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
           E L  +M+ S    P   ++  +++ YG+ G ++    +  +M + G+  +V+    +++
Sbjct: 424 EDLVMEMEKSGV-DPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVK 482

Query: 477 CLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKL 536
              K  +I + V +    I + V P+ ++   ++   +  E+ +    ++   +  N  +
Sbjct: 483 AFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIID--AYIESGDTEQALLLVEKMKNSGV 540

Query: 537 VAFL---NLIEDNSTGFENIKEEFRNVIKDTEVDARRPFC---NCLIDICRNRNLNERAH 590
            A +   NL+         I +E   +I        RP     N +I  C N+   ++A 
Sbjct: 541 SASIVTYNLLLKGLCRSSQI-DEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKAL 599

Query: 591 ELLYLGTLYGLYPGL 605
           ELL     YG+ P L
Sbjct: 600 ELLQEMNKYGIRPTL 614



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/302 (23%), Positives = 142/302 (47%), Gaps = 6/302 (1%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           + ++  F  +KS+++ P + I YN  +  L         E L  EM  + ++    T++T
Sbjct: 386 RGAFCIFEQMKSRHIRP-DHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNT 444

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           +I         ++       M + G+  D +++ +++  + K+GK+ E +++ +  +   
Sbjct: 445 LIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKD 504

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
             P+   ++ +   + ESGD +    ++++MK+ GV  ++V YN LL+ + ++ +   A 
Sbjct: 505 VAPNAQVYNSIIDAYIESGDTEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAE 564

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY--NTLLN 405
            L   +   GL PD  +   +I           ALEL + M  NK+ +   L   +TL++
Sbjct: 565 ELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEM--NKYGIRPTLRTCHTLVS 622

Query: 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
             A  G V + E L++ M L    +P +  Y  M++ Y    N      L +EMSE G+A
Sbjct: 623 ALASAGRVHDMECLYQQM-LHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKEMSEKGIA 681

Query: 466 IN 467
            +
Sbjct: 682 FD 683



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 79/349 (22%), Positives = 144/349 (41%), Gaps = 38/349 (10%)

Query: 191 NVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYK 250
           N+ ++SL F  +   +      +V+     D   ++ ++         D A+    RM +
Sbjct: 126 NLLLESLLFVGRHADVRAAFGLLVAAGARPDTFAWNKVVQACVAAGDLDVALAMLRRMGR 185

Query: 251 T--GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY 308
           +     PD  +Y+ ++    +SGK  + L +++  V  G  P+ I ++ +     + GD 
Sbjct: 186 SEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVAPNRITYNTMIDGHVKGGDL 245

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
           +    +  +M   G +PN+V YN LL  + + G+    R+L DEM    + PD  T + L
Sbjct: 246 EAGFRLRDQMLHDGPKPNVVTYNVLLSGLCRTGRMDETRALMDEMASHSMLPDGFTYSIL 305

Query: 369 ---------------------------------IKIYGKARWAK--DALELWERMRENKW 393
                                            I + G  +  K   A +++E +     
Sbjct: 306 FDGLTRTGESQTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAKQVFEMLVHTGL 365

Query: 394 PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAI 453
               ++YNTL+N    +  +  A  +FE MK S + +PD+ +Y A++N       V  A 
Sbjct: 366 VPTTVIYNTLINGYCQVRDLRGAFCIFEQMK-SRHIRPDHITYNALINGLCKLEMVTKAE 424

Query: 454 ELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           +L  EM + GV  +V     LI   G A +++    V      +G+K D
Sbjct: 425 DLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSD 473



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 69/158 (43%), Gaps = 4/158 (2%)

Query: 205 LIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAIL 264
           L+E++ N  VS  I    +TY+ ++    R +  DEA E    +   GL PD V+Y+ I+
Sbjct: 531 LVEKMKNSGVSASI----VTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTII 586

Query: 265 DVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQ 324
                 G  ++ L L +     G +P       L      +G    +  + Q+M    V+
Sbjct: 587 SACCNKGDTDKALELLQEMNKYGIRPTLRTCHTLVSALASAGRVHDMECLYQQMLHKNVE 646

Query: 325 PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
           P+  +Y  +++A  +        SL  EM E G+  D+
Sbjct: 647 PSSSIYGIMVDAYVRCENDSKVASLKKEMSEKGIAFDD 684



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 3/164 (1%)

Query: 325 PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384
           P+L   N LLE++   G+    R+ F  +V +G  PD      +++    A     AL +
Sbjct: 120 PSLSSCNLLLESLLFVGRHADVRAAFGLLVAAGARPDTFAWNKVVQACVAAGDLDVALAM 179

Query: 385 WERM--RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNI 442
             RM   E   P D   YN ++      G   +A ++F++M +     P+  +Y  M++ 
Sbjct: 180 LRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEM-VDMGVAPNRITYNTMIDG 238

Query: 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
           +  GG+++    L ++M   G   NV+    L+  L +  R+D+
Sbjct: 239 HVKGGDLEAGFRLRDQMLHDGPKPNVVTYNVLLSGLCRTGRMDE 282


>gi|115482764|ref|NP_001064975.1| Os10g0499500 [Oryza sativa Japonica Group]
 gi|22165074|gb|AAM93691.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|31432889|gb|AAP54465.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639584|dbj|BAF26889.1| Os10g0499500 [Oryza sativa Japonica Group]
 gi|125575293|gb|EAZ16577.1| hypothetical protein OsJ_32049 [Oryza sativa Japonica Group]
 gi|215694503|dbj|BAG89496.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215697419|dbj|BAG91413.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|295901486|dbj|BAJ07249.1| pentatricopeptide repeat-containing protein [Oryza sativa Japonica
           Group]
 gi|295901490|dbj|BAJ07251.1| pentatricopeptide repeat-containing protein [Oryza sativa Japonica
           Group]
          Length = 506

 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 137/261 (52%), Gaps = 1/261 (0%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           ++YST+I    +    D+A   +  M    ++P+ V YS+I+    K   +++ + +++R
Sbjct: 199 VSYSTVIDGLLKGGDPDKAYATYREMLDRRILPNVVIYSSIIAALCKGQAMDKAMEVHDR 258

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
            V +G  P+   ++ L   F  SG        L++M S GV+PN+V Y++ ++ + K G+
Sbjct: 259 MVKNGVTPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCKNGR 318

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
              AR +FD MV+ GL PD  T ++L+  Y       +   L++ M ++    D  ++NT
Sbjct: 319 CTEARKIFDSMVKRGLKPDITTYSSLLHGYAIEGALVEMHGLFDLMVQSDMQPDHYVFNT 378

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
           L+   A  G V+EA  +F  M+     KP+  +Y+ ++N Y     ++NA+ LF+EM   
Sbjct: 379 LIYASAKQGKVDEAMLVFSKMRQQGL-KPNCVTYSTLINGYCKITRMENALALFQEMVSN 437

Query: 463 GVAINVMGCTCLIQCLGKARR 483
           GV+ N +    ++Q L +  R
Sbjct: 438 GVSPNFITYNIMLQGLFRTGR 458



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 84/352 (23%), Positives = 155/352 (44%), Gaps = 11/352 (3%)

Query: 117 YNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTRENALLILNSLKFWQKSYFFFNW 176
           +NP ++ L    R     D+  +  LR +TE+   P   +  +IL  L    +S      
Sbjct: 128 FNPLLKGLCADKRT----DDAMDIVLRGMTELSCVPNVFSHTIILKGLCHENRSQEALEL 183

Query: 177 IK-----SQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITC 231
           +           P   + Y+  +  L  G           EM+   I  + + YS+II  
Sbjct: 184 LHMMADDGGGCLP-NVVSYSTVIDGLLKGGDPDKAYATYREMLDRRILPNVVIYSSIIAA 242

Query: 232 AKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291
             +    D+A+E  +RM K G+ P+  TY++++  +  SG++ E +   E+  ++G +P+
Sbjct: 243 LCKGQAMDKAMEVHDRMVKNGVTPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPN 302

Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
            + +S       ++G     R +   M   G++P++  Y++LL      G       LFD
Sbjct: 303 VVTYSSFMDYLCKNGRCTEARKIFDSMVKRGLKPDITTYSSLLHGYAIEGALVEMHGLFD 362

Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411
            MV+S + PD      LI    K     +A+ ++ +MR+     + + Y+TL+N    I 
Sbjct: 363 LMVQSDMQPDHYVFNTLIYASAKQGKVDEAMLVFSKMRQQGLKPNCVTYSTLINGYCKIT 422

Query: 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
            +E A  LF++M +S+   P+  +Y  ML      G    A E + ++ + G
Sbjct: 423 RMENALALFQEM-VSNGVSPNFITYNIMLQGLFRTGRTATAKEFYVQIIKSG 473



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/339 (19%), Positives = 139/339 (41%), Gaps = 43/339 (12%)

Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS 261
           +F  + +    MV+  +     TY  +I C       D        + K G   + + ++
Sbjct: 74  RFNRMARAGASMVTPTVH----TYGILIGCCCSAGRLDLGFAALGHVVKKGFRVEPIIFN 129

Query: 262 AILDVYAKSGKVEEVLSLYERGV------------------------------------- 284
            +L       + ++ + +  RG+                                     
Sbjct: 130 PLLKGLCADKRTDDAMDIVLRGMTELSCVPNVFSHTIILKGLCHENRSQEALELLHMMAD 189

Query: 285 -ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
              G  P+ +++S +     + GD D      +EM    + PN+V+Y++++ A+ K    
Sbjct: 190 DGGGCLPNVVSYSTVIDGLLKGGDPDKAYATYREMLDRRILPNVVIYSSIIAALCKGQAM 249

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
             A  + D MV++G+TP+  T T+L+  +  +    +A++  E+M  N    + + Y++ 
Sbjct: 250 DKAMEVHDRMVKNGVTPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSF 309

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           ++     G   EA ++F+ M +    KPD  +Y+++L+ Y   G +     LF+ M +  
Sbjct: 310 MDYLCKNGRCTEARKIFDSM-VKRGLKPDITTYSSLLHGYAIEGALVEMHGLFDLMVQSD 368

Query: 464 VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           +  +      LI    K  ++D+ + VF     +G+KP+
Sbjct: 369 MQPDHYVFNTLIYASAKQGKVDEAMLVFSKMRQQGLKPN 407



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 57/268 (21%), Positives = 123/268 (45%), Gaps = 7/268 (2%)

Query: 241 AIEWFERMYKTG---LMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS- 296
           A+  F RM + G   + P   TY  ++     +G+++   +     V  G++ +PI F+ 
Sbjct: 71  AVSRFNRMARAGASMVTPTVHTYGILIGCCCSAGRLDLGFAALGHVVKKGFRVEPIIFNP 130

Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVE- 355
           +L  +  +    D +  VL+ M  L   PN+  +  +L+ +    +   A  L   M + 
Sbjct: 131 LLKGLCADKRTDDAMDIVLRGMTELSCVPNVFSHTIILKGLCHENRSQEALELLHMMADD 190

Query: 356 -SGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
             G  P+  + + +I    K      A   +  M + +   + ++Y++++        ++
Sbjct: 191 GGGCLPNVVSYSTVIDGLLKGGDPDKAYATYREMLDRRILPNVVIYSSIIAALCKGQAMD 250

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
           +A  + + M + +   P+ ++YT++++ + S G +  AI+  E+M   GV  NV+  +  
Sbjct: 251 KAMEVHDRM-VKNGVTPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSF 309

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           +  L K  R  +  ++F   + RG+KPD
Sbjct: 310 MDYLCKNGRCTEARKIFDSMVKRGLKPD 337



 Score = 40.0 bits (92), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 24/119 (20%), Positives = 57/119 (47%), Gaps = 1/119 (0%)

Query: 171 YFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIIT 230
           +  F+ +   ++ P   +F  +   S + G+  + +  + ++M    ++ + +TYST+I 
Sbjct: 358 HGLFDLMVQSDMQPDHYVFNTLIYASAKQGKVDEAM-LVFSKMRQQGLKPNCVTYSTLIN 416

Query: 231 CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWK 289
              +    + A+  F+ M   G+ P+ +TY+ +L    ++G+       Y + + SG K
Sbjct: 417 GYCKITRMENALALFQEMVSNGVSPNFITYNIMLQGLFRTGRTATAKEFYVQIIKSGKK 475


>gi|357128238|ref|XP_003565781.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial-like [Brachypodium distachyon]
          Length = 547

 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 94/369 (25%), Positives = 172/369 (46%), Gaps = 38/369 (10%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           FF W + Q  F      ++  +++L   +QF+L+  L   M    + L   T+  I+   
Sbjct: 147 FFRWAERQQGFRYTAESFHNLIEALGKIKQFRLVWSLVEAMRCRGL-LSKDTFRLIVRRY 205

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG-WKPD 291
            R     EA+E FE+M   GL  D   Y+ ++DV +KS +V++  ++++    +G + PD
Sbjct: 206 ARARKVKEAVETFEKMSSFGLKADLSDYNWLIDVLSKSKQVKKAHAIFKEMKRNGRFVPD 265

Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
              ++VL + +G   D   ++ V QEM   G++P++V Y TL+ +  K+GK   A  +F 
Sbjct: 266 LKTYTVLMEGWGHEKDLLMLKSVYQEMLDAGIKPDVVAYGTLISSFCKSGKCDEAIKVFR 325

Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMD--------------- 396
           EM  +G  P       LI   G      +AL+ +E  + + +PM+               
Sbjct: 326 EMEANGCMPSPHVYCMLINGLGSEERLDEALKYFELSKASGFPMEVPTCNAVVGAYCRSS 385

Query: 397 -----FIL---------------YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY 436
                F +               Y+ +L        +EEA  +F+ M + + C+P   +Y
Sbjct: 386 KFQHAFKMVDEMRKTGIGPNARTYDIILQYLIKSQKIEEAYNVFQRMGM-EGCEPQLNTY 444

Query: 437 TAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496
           T M+ ++ S   VD A++++++M E GV   +   + LI  L    R+++    F   +D
Sbjct: 445 TMMVGMFCSNERVDMALKVWKQMKEKGVLPCMHMFSSLINGLCFENRLEEACVYFQEMLD 504

Query: 497 RGVKPDDRL 505
           +G++P  +L
Sbjct: 505 KGIRPPGQL 513



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/297 (23%), Positives = 137/297 (46%), Gaps = 3/297 (1%)

Query: 160 ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIE 219
           +L+  K  +K++  F  +K    F  +   Y V M+     +   +++ +  EM+   I+
Sbjct: 239 VLSKSKQVKKAHAIFKEMKRNGRFVPDLKTYTVLMEGWGHEKDLLMLKSVYQEMLDAGIK 298

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
            D + Y T+I+   +    DEAI+ F  M   G MP    Y  +++      +++E L  
Sbjct: 299 PDVVAYGTLISSFCKSGKCDEAIKVFREMEANGCMPSPHVYCMLINGLGSEERLDEALKY 358

Query: 280 YERGVASGWKPD-PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMG 338
           +E   ASG+  + P   +V+G  +  S  +     ++ EM+  G+ PN   Y+ +L+ + 
Sbjct: 359 FELSKASGFPMEVPTCNAVVGA-YCRSSKFQHAFKMVDEMRKTGIGPNARTYDIILQYLI 417

Query: 339 KAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFI 398
           K+ K   A ++F  M   G  P   T T ++ ++        AL++W++M+E        
Sbjct: 418 KSQKIEEAYNVFQRMGMEGCEPQLNTYTMMVGMFCSNERVDMALKVWKQMKEKGVLPCMH 477

Query: 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIEL 455
           ++++L+N       +EEA   F++M L    +P    ++ +      GG +  A ++
Sbjct: 478 MFSSLINGLCFENRLEEACVYFQEM-LDKGIRPPGQLFSNLKEALIEGGRISLAQDM 533


>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Glycine max]
          Length = 757

 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 90/348 (25%), Positives = 164/348 (47%), Gaps = 9/348 (2%)

Query: 161 LNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSL-----RFGRQFQLIEQLANEMVS 215
           L+ L F  K+    +        P   + YN  + +L        R +   E++  +MV 
Sbjct: 142 LSRLGFVPKALTLLHLANRHGFAP-TVLSYNAVLDALLRRSSSNHRDYDDAERVFRDMVR 200

Query: 216 NEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEE 275
           N +  +  TY+ II         ++ + +  +M K G+ P+ VTY+ ++D   K  KV+E
Sbjct: 201 NGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLIDASCKKKKVKE 260

Query: 276 VLSLYERGVASGWKPDPIAF-SVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLL 334
            ++L       G   + I++ SV+  + G+ G    +  +++EM+  G+ P+ V YNTL+
Sbjct: 261 AMALLRAMAVGGVAANLISYNSVINGLCGK-GRMSEVGELVEEMRGKGLVPDEVTYNTLV 319

Query: 335 EAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWP 394
               K G       L  EMV  GL+P+  T T LI    KA     A+E++++MR     
Sbjct: 320 NGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLR 379

Query: 395 MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIE 454
            +   Y TL++     GL+ EA ++  +M +S +  P   +Y A+++ Y   G V  A+ 
Sbjct: 380 PNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGF-SPSVVTYNALVHGYCFLGRVQEAVG 438

Query: 455 LFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           +   M E G+  +V+  + +I    + R +    ++    +++GV PD
Sbjct: 439 ILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVLPD 486



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 138/297 (46%), Gaps = 3/297 (1%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           I YN  +  L    +   + +L  EM    +  D +TY+T++    +     + +     
Sbjct: 278 ISYNSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSE 337

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M   GL P+ VTY+ +++   K+G +   + ++++    G +P+   ++ L   F + G 
Sbjct: 338 MVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGL 397

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
            +    VL EM   G  P++V YN L+      G+   A  +   MVE GL PD  + + 
Sbjct: 398 MNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYST 457

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL-NMCADIGLVEEAERLFEDMKLS 426
           +I  + + R    A ++ E M E     D + Y++L+  +C    LV EA  LF +M + 
Sbjct: 458 VIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLV-EAFDLFREM-MR 515

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483
               PD  +YT+++N Y   G +  A+ L +EM + G   + +  + LI  L K  R
Sbjct: 516 RGLPPDEVTYTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVLINGLNKKAR 572



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 103/431 (23%), Positives = 173/431 (40%), Gaps = 90/431 (20%)

Query: 177 IKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCN 236
           ++ + L P E  +  +     + G   Q +  L +EMV   +  + +TY+T+I C  +  
Sbjct: 303 MRGKGLVPDEVTYNTLVNGFCKEGNLHQGL-VLLSEMVGKGLSPNVVTYTTLINCMCKAG 361

Query: 237 LFDEAIEWFERMYKTGLMPDE-----------------------------------VTYS 261
               A+E F++M   GL P+E                                   VTY+
Sbjct: 362 NLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYN 421

Query: 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
           A++  Y   G+V+E + +    V  G  PD +++S +   F    +      + +EM   
Sbjct: 422 ALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEMVEK 481

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
           GV P+ V Y++L++ +    K   A  LF EM+  GL PDE T T+LI  Y        A
Sbjct: 482 GVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTSLINAYCVDGELSKA 541

Query: 382 LELWERM------------------------------------RENKWPMDFILYNTLLN 405
           L L + M                                     E   P D + YNTL+ 
Sbjct: 542 LRLHDEMVQRGFLPDNVTYSVLINGLNKKARTKVAKRLLLKLFYEESVPDD-VTYNTLIE 600

Query: 406 MCAD---------------IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
            C++                GL+ EA+R+F+ M   ++ KP+   Y  M++ +  GGNV 
Sbjct: 601 NCSNNEFKSVEGLVKGFCMKGLMNEADRVFKTMLQRNH-KPNAAIYNLMIHGHSRGGNVH 659

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
            A  L+ E+     A + +    L++ L +    D+L R+   +I R  + +D     +L
Sbjct: 660 KAYNLYMELEHSSFACHTVAVIALVKALAREGMNDELSRLLQ-NILRSCRLNDAKVAKVL 718

Query: 511 SVVSLCETSED 521
             V+  E + D
Sbjct: 719 VEVNFKEGNMD 729



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 117/253 (46%), Gaps = 10/253 (3%)

Query: 261 SAILDVYAKS----GKVEEVLSLYERGVASGWKPDPIAF-SVLGKMFGESG----DYDGI 311
           SA+ D+  KS    G V + L+L       G+ P  +++ +VL  +   S     DYD  
Sbjct: 132 SAVFDLVVKSLSRLGFVPKALTLLHLANRHGFAPTVLSYNAVLDALLRRSSSNHRDYDDA 191

Query: 312 RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371
             V ++M   GV PN+  YN ++  +   G          +M + G++P+  T   LI  
Sbjct: 192 ERVFRDMVRNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLIDA 251

Query: 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
             K +  K+A+ L   M       + I YN+++N     G + E   L E+M+      P
Sbjct: 252 SCKKKKVKEAMALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVGELVEEMRGKGLV-P 310

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           D  +Y  ++N +   GN+   + L  EM   G++ NV+  T LI C+ KA  +   V +F
Sbjct: 311 DEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIF 370

Query: 492 GVSIDRGVKPDDR 504
                RG++P++R
Sbjct: 371 DQMRVRGLRPNER 383



 Score = 45.1 bits (105), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 44/199 (22%), Positives = 81/199 (40%), Gaps = 19/199 (9%)

Query: 180 QNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIIT--------- 230
           Q  F  + + Y+V +  L    + ++ ++L  ++   E   D++TY+T+I          
Sbjct: 550 QRGFLPDNVTYSVLINGLNKKARTKVAKRLLLKLFYEESVPDDVTYNTLIENCSNNEFKS 609

Query: 231 --------CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
                   C K   L +EA   F+ M +    P+   Y+ ++  +++ G V +  +LY  
Sbjct: 610 VEGLVKGFCMK--GLMNEADRVFKTMLQRNHKPNAAIYNLMIHGHSRGGNVHKAYNLYME 667

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
              S +    +A   L K     G  D +  +LQ +       +  V   L+E   K G 
Sbjct: 668 LEHSSFACHTVAVIALVKALAREGMNDELSRLLQNILRSCRLNDAKVAKVLVEVNFKEGN 727

Query: 343 PGLARSLFDEMVESGLTPD 361
                ++  EM + GL PD
Sbjct: 728 MDAVLNVLTEMAKDGLLPD 746


>gi|242041853|ref|XP_002468321.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
 gi|241922175|gb|EER95319.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
          Length = 794

 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 97/346 (28%), Positives = 162/346 (46%), Gaps = 11/346 (3%)

Query: 191 NVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYK 250
           +   K  R      L+E++ ++ V + +    +T++ ++    R    +EA+   + M +
Sbjct: 359 DACFKYQRSSDALNLLEEMRDKGVKSSL----VTHNIVVKGLCREGQLEEALGRLKMMTE 414

Query: 251 TGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDG 310
            GL PD +TY+ ++D Y K+  V +   L +  V SG K D    + L     +   Y+ 
Sbjct: 415 EGLAPDVITYNTLIDAYCKARNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEE 474

Query: 311 IRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK 370
              +L+     G  P+ V Y T++ A  K  KP  A  L+DEM +  LTP   T   LIK
Sbjct: 475 AEELLRSPPQRGFVPDEVSYGTVMAAYFKENKPEPALYLWDEMSKRKLTPSIYTYNTLIK 534

Query: 371 ---IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
                GK   A D L   E M++   P D   YN +++     G +E+A + F +  L +
Sbjct: 535 GLCTIGKLTEAIDKLN--ELMKKGLVP-DDTTYNIIIHAYCKEGDLEKAFQ-FHNKMLEN 590

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
           Y KPD  +   ++N     G ++ AI+LFE  +E G  ++V+    LIQ L K   +D  
Sbjct: 591 YFKPDVVTCNTLMNGLCLHGKLEKAIKLFESWAEKGKKVDVITYNTLIQALCKDGDVDTA 650

Query: 488 VRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN 533
           +  F     RG++PD      +LS +S    SE+   ++  L ++ 
Sbjct: 651 LHFFADMEARGLQPDAFTYNVVLSALSEAGRSEEAQNMLHKLDESG 696



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 140/301 (46%), Gaps = 5/301 (1%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLAN-EMVSNE-IELDNITYSTIITCAKRCNLFDEAIEWF 245
           + +N+ +K L   R+ QL E L   +M++ E +  D ITY+T+I    +     +A    
Sbjct: 387 VTHNIVVKGL--CREGQLEEALGRLKMMTEEGLAPDVITYNTLIDAYCKARNVAKAFVLM 444

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           + M ++GL  D  T + +L    K  + EE   L       G+ PD +++  +   + + 
Sbjct: 445 DEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRSPPQRGFVPDEVSYGTVMAAYFKE 504

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
              +   Y+  EM    + P++  YNTL++ +   GK   A    +E+++ GL PD+ T 
Sbjct: 505 NKPEPALYLWDEMSKRKLTPSIYTYNTLIKGLCTIGKLTEAIDKLNELMKKGLVPDDTTY 564

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
             +I  Y K    + A +   +M EN +  D +  NTL+N     G +E+A +LFE    
Sbjct: 565 NIIIHAYCKEGDLEKAFQFHNKMLENYFKPDVVTCNTLMNGLCLHGKLEKAIKLFESWAE 624

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
               K D  +Y  ++      G+VD A+  F +M   G+  +      ++  L +A R +
Sbjct: 625 KGK-KVDVITYNTLIQALCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRSE 683

Query: 486 D 486
           +
Sbjct: 684 E 684



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 133/302 (44%), Gaps = 4/302 (1%)

Query: 213 MVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK 272
           +++  +  ++ T++ ++          +A+     M   GL PD VTY+ +L  + + G 
Sbjct: 201 LIALRLHPNHYTFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDVVTYNTLLKAHCRKGM 260

Query: 273 VEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNT 332
           + E  +L  R    G  P    ++ L   +   G       V++ M + G +P+L  YN 
Sbjct: 261 LGEARTLLARMKKEGIAPTRATYNTLVSAYARLGWIKQATNVVEAMTAFGFEPDLWTYNV 320

Query: 333 LLEAMGKAGKPGLARSLFDEMVE-SGLTPDEKTLTALIKIYGKARWAKDALELWERMREN 391
           L   + +AGK   A  L DEM   S ++PD  T   L+    K + + DAL L E MR+ 
Sbjct: 321 LAAGLCQAGKVDEAFKLKDEMEHLSIVSPDVVTYNTLVDACFKYQRSSDALNLLEEMRDK 380

Query: 392 KWPMDFILYNTLL-NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
                 + +N ++  +C +  L E   RL   M   +   PD  +Y  +++ Y    NV 
Sbjct: 381 GVKSSLVTHNIVVKGLCREGQLEEALGRL--KMMTEEGLAPDVITYNTLIDAYCKARNVA 438

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
            A  L +EM   G+ ++      L+  L K +R ++   +      RG  PD+   G ++
Sbjct: 439 KAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRSPPQRGFVPDEVSYGTVM 498

Query: 511 SV 512
           + 
Sbjct: 499 AA 500



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 125/281 (44%), Gaps = 7/281 (2%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + I YN  + +    R       L +EMV + +++D  T +T++    +   ++EA E  
Sbjct: 420 DVITYNTLIDAYCKARNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELL 479

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
               + G +PDEV+Y  ++  Y K  K E  L L++        P    ++ L K     
Sbjct: 480 RSPPQRGFVPDEVSYGTVMAAYFKENKPEPALYLWDEMSKRKLTPSIYTYNTLIKGLCTI 539

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G        L E+   G+ P+   YN ++ A  K G    A    ++M+E+   PD  T 
Sbjct: 540 GKLTEAIDKLNELMKKGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMLENYFKPDVVTC 599

Query: 366 TALIK---IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED 422
             L+    ++GK    + A++L+E   E    +D I YNTL+      G V+ A   F D
Sbjct: 600 NTLMNGLCLHGKL---EKAIKLFESWAEKGKKVDVITYNTLIQALCKDGDVDTALHFFAD 656

Query: 423 MKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           M+ +   +PD ++Y  +L+     G  + A  +  ++ E G
Sbjct: 657 ME-ARGLQPDAFTYNVVLSALSEAGRSEEAQNMLHKLDESG 696



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 65/269 (24%), Positives = 120/269 (44%), Gaps = 4/269 (1%)

Query: 236 NLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKV--EEVLSLYERGVASGWKPDPI 293
           +L  + +  F R  +  + P     +A+L   A+S     +  L ++   +A    P+  
Sbjct: 154 HLAAQLLHSFRR--RGHVRPSLQAANAVLSALARSPSTSPQASLDVFRSLIALRLHPNHY 211

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
            F++L       G        L  M+  G+ P++V YNTLL+A  + G  G AR+L   M
Sbjct: 212 TFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDVVTYNTLLKAHCRKGMLGEARTLLARM 271

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
            + G+ P   T   L+  Y +  W K A  + E M    +  D   YN L       G V
Sbjct: 272 KKEGIAPTRATYNTLVSAYARLGWIKQATNVVEAMTAFGFEPDLWTYNVLAAGLCQAGKV 331

Query: 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTC 473
           +EA +L ++M+      PD  +Y  +++         +A+ L EEM + GV  +++    
Sbjct: 332 DEAFKLKDEMEHLSIVSPDVVTYNTLVDACFKYQRSSDALNLLEEMRDKGVKSSLVTHNI 391

Query: 474 LIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           +++ L +  ++++ +    +  + G+ PD
Sbjct: 392 VVKGLCREGQLEEALGRLKMMTEEGLAPD 420



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/273 (21%), Positives = 122/273 (44%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
           +EM   ++     TY+T+I          EAI+    + K GL+PD+ TY+ I+  Y K 
Sbjct: 515 DEMSKRKLTPSIYTYNTLIKGLCTIGKLTEAIDKLNELMKKGLVPDDTTYNIIIHAYCKE 574

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
           G +E+    + + + + +KPD +  + L       G  +    + +     G + +++ Y
Sbjct: 575 GDLEKAFQFHNKMLENYFKPDVVTCNTLMNGLCLHGKLEKAIKLFESWAEKGKKVDVITY 634

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
           NTL++A+ K G    A   F +M   GL PD  T   ++    +A  +++A  +  ++ E
Sbjct: 635 NTLIQALCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRSEEAQNMLHKLDE 694

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
           +    +   Y  + +   ++   ++ E   +     +    D  SY   +     GG + 
Sbjct: 695 SGKLSERFSYPLIKSSAEEVKTGKDPEVKSDCESGGNAKGGDQESYNKSVKELCVGGQLK 754

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483
            A  + +EM + G++++      L++ L K ++
Sbjct: 755 EAKAVLDEMMQKGMSVDSSTYITLMEGLIKRQK 787



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/281 (20%), Positives = 114/281 (40%), Gaps = 32/281 (11%)

Query: 105 LSLQRQKRSTYSYNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTRENALLILNSL 164
           +S ++   S Y+YN  ++ L    +     D   E   + +  +P   T    +      
Sbjct: 517 MSKRKLTPSIYTYNTLIKGLCTIGKLTEAIDKLNELMKKGL--VPDDTTYNIIIHAYCKE 574

Query: 165 KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNIT 224
              +K++ F N +  +N F  + +  N  M  L    + +   +L         ++D IT
Sbjct: 575 GDLEKAFQFHNKM-LENYFKPDVVTCNTLMNGLCLHGKLEKAIKLFESWAEKGKKVDVIT 633

Query: 225 YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
           Y+T+I    +    D A+ +F  M   GL PD  TY+ +L   +++G+ EE  ++  +  
Sbjct: 634 YNTLIQALCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRSEEAQNMLHKLD 693

Query: 285 ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV---------------V 329
            SG                E   Y  I+   +E+K+ G  P +                 
Sbjct: 694 ESG-------------KLSERFSYPLIKSSAEEVKT-GKDPEVKSDCESGGNAKGGDQES 739

Query: 330 YNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK 370
           YN  ++ +   G+   A+++ DEM++ G++ D  T   L++
Sbjct: 740 YNKSVKELCVGGQLKEAKAVLDEMMQKGMSVDSSTYITLME 780


>gi|357165906|ref|XP_003580534.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79490,
           mitochondrial-like [Brachypodium distachyon]
          Length = 775

 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 120/517 (23%), Positives = 218/517 (42%), Gaps = 19/517 (3%)

Query: 152 PTRENALL-ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSL-RFGRQFQLIEQL 209
           P   NA++  L +    + +++ F  ++      +ET  YN  +  L   G  F+  E L
Sbjct: 181 PKTLNAVVSALATHGLLEPAFYCFKRLRDAGFRGLETPTYNALLSVLLTRGLAFKAFEVL 240

Query: 210 ANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYK---TGLMPDEVTYSAILDV 266
            +EM  +   LD  TY   +    R    D + + F+ M +    G     V YS ++DV
Sbjct: 241 -DEMSVSGCALDKGTYELAVPALARAGRIDASRKLFDEMRQRDGVGRASPGV-YSVMVDV 298

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
            AKSG+++  + +Y   VA G +      + + +    +G  D    + +EM+  G++P+
Sbjct: 299 LAKSGRLDAAMGMYREMVAVGHRVSTSVSTAMVEGLVRAGKLDAGMELWEEMRRGGLRPS 358

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
             +Y  ++EA  ++G+  +A  LF +M +SG  P   T   L++++  A     A+ ++ 
Sbjct: 359 FGLYTMVVEANARSGRLDVAAKLFGDMEKSGFFPTPATYACLVEMHASAGQVDIAMRMYH 418

Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
            M           +  LL M A+  L++ A ++  +MK S +  P   + + +L IY   
Sbjct: 419 SMANAGTRPGLSTFTALLTMLANKRLLDLAAKVLLEMKASGF--PIEVTASDLLMIYIKD 476

Query: 447 GNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLC 506
           G+ + A+     M   G+  N      L +   K    D    +    +    K D  L 
Sbjct: 477 GSTELALRWLRFMGSAGIRTNNFIIRQLFESCMKMGLYDSARPLLETYVGAAAKVDMILY 536

Query: 507 GCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLI-----EDNSTGFENIKEEFRNVI 561
             +L+ +  C+       ++  L  +  K   F+  +     +        ++E F+ + 
Sbjct: 537 TSILAHLVRCQDEGSEWAIMDILSVSRHKAHDFMCGLFTGPEQRKKPVLSFVREFFQGID 596

Query: 562 KDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDE---WSLDVR 618
            D E  A R F N L++         RA  +  +     L+P       D+   WSLD+R
Sbjct: 597 YDNEESAARYFVNVLLNYLVLMGQMNRARCVWKVAYENKLFP--KAIVFDQHIAWSLDIR 654

Query: 619 SLSVGAAQTALEEWMWTLAKIVLREEVLPQLFLAETG 655
           +LSVGAA  +    +    K +L   V+P+     TG
Sbjct: 655 NLSVGAALVSTVHTLHRFRKRMLYYGVVPRRIKLVTG 691


>gi|168038876|ref|XP_001771925.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162676707|gb|EDQ63186.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 831

 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 87/339 (25%), Positives = 150/339 (44%), Gaps = 36/339 (10%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           Q++NEM    I+ +  TYS II    +      A   FE M   G+ PD +TY+ +++ +
Sbjct: 391 QISNEMEDQGIKHNRKTYSMIIDGYVQLGDTANAFSVFEDMSNAGIKPDGITYNILMNAF 450

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            K+G++   L L  R  +    P    ++++   F + GD       +++MK  G +P+ 
Sbjct: 451 CKNGQMNRALELLARMESGDCPPTLRTYTIIIDGFMKIGDLRMAFETVRDMKMAGFRPSA 510

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYG-------------- 373
             YN ++  + +AG+   A S+ DEMV +G+ P+E++ T LI+ Y               
Sbjct: 511 ATYNVIMHGLAQAGQMDRAASIIDEMVVAGVHPNERSYTTLIEGYACIGDMGLAFKYFNR 570

Query: 374 ---------------------KARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
                                KA   +  L +   M     PM+  +YN LL+  A  G 
Sbjct: 571 IKEVGLKPDVIAYASLLKACCKAGRMQSTLAITAEMAAAGVPMNNYIYNILLDGWAQRGD 630

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
           + EA  + + M+  +   PD +SYT+ +N     G++  A E  E+M + GV  N+   T
Sbjct: 631 MWEASDIMQKMR-HEGLTPDIHSYTSFINACCKAGDMLKATETIEQMKQQGVQPNLQAYT 689

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
            LI     A   +  +  +      G+ PD  L  C+++
Sbjct: 690 TLIHGWASASYPEKALICYDEMKSAGMIPDKPLYHCIMT 728



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 135/332 (40%), Gaps = 45/332 (13%)

Query: 212 EMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG 271
           EM +  +  +  TYS II+   R    + A  WF+R        ++V Y+ I+  Y K+G
Sbjct: 252 EMEAEGVSPNAATYSVIISGYGRLGDVEAAERWFQRALSENWHHNDVIYNNIIHAYCKAG 311

Query: 272 KVEEV---------------LSLYE---------RGV--------------ASGWKPDPI 293
            +E                 L LY          R V               +G  P  +
Sbjct: 312 NMERAEAIMTAMEEQGLEATLGLYNMLMDGYVHCRAVDKCLNVFRRLKARTETGLSPTVV 371

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
           ++  L  ++ + G  D    +  EM+  G++ N   Y+ +++   + G    A S+F++M
Sbjct: 372 SYGCLINLYSKLGKMDKALQISNEMEDQGIKHNRKTYSMIIDGYVQLGDTANAFSVFEDM 431

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
             +G+ PD  T   L+  + K      ALEL  RM     P     Y  +++    IG +
Sbjct: 432 SNAGIKPDGITYNILMNAFCKNGQMNRALELLARMESGDCPPTLRTYTIIIDGFMKIGDL 491

Query: 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTC 473
             A     DMK++ + +P   +Y  +++     G +D A  + +EM   GV  N    T 
Sbjct: 492 RMAFETVRDMKMAGF-RPSAATYNVIMHGLAQAGQMDRAASIIDEMVVAGVHPNERSYTT 550

Query: 474 LIQ---CLGKARRIDDLVRVFGVSIDRGVKPD 502
           LI+   C+G    +    + F    + G+KPD
Sbjct: 551 LIEGYACIGD---MGLAFKYFNRIKEVGLKPD 579



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 102/223 (45%), Gaps = 4/223 (1%)

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
           FE M   G+ P+  +Y+ ++  YA +  +   ++  E   A G  P+   +SV+   +G 
Sbjct: 215 FESMRAAGIEPNVHSYTNLIHAYAVAQDLRGAIACVEEMEAEGVSPNAATYSVIISGYGR 274

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
            GD +      Q   S     N V+YN ++ A  KAG    A ++   M E GL      
Sbjct: 275 LGDVEAAERWFQRALSENWHHNDVIYNNIIHAYCKAGNMERAEAIMTAMEEQGLEATLGL 334

Query: 365 LTALIKIYGKARWAKDALELWERMR---ENKWPMDFILYNTLLNMCADIGLVEEAERLFE 421
              L+  Y   R     L ++ R++   E       + Y  L+N+ + +G +++A ++  
Sbjct: 335 YNMLMDGYVHCRAVDKCLNVFRRLKARTETGLSPTVVSYGCLINLYSKLGKMDKALQISN 394

Query: 422 DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
           +M+     K +  +Y+ +++ Y   G+  NA  +FE+MS  G+
Sbjct: 395 EME-DQGIKHNRKTYSMIIDGYVQLGDTANAFSVFEDMSNAGI 436



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 58/263 (22%), Positives = 113/263 (42%), Gaps = 6/263 (2%)

Query: 242 IEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKM 301
           ++ F+R+ K    P +  ++ +++ Y K G      + +E   A+G +P+  +++ L   
Sbjct: 181 VDAFKRIKK----PKQRDHTLLVNYYGKRGDKHSARAAFESMRAAGIEPNVHSYTNLIHA 236

Query: 302 FGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD 361
           +  + D  G    ++EM++ GV PN   Y+ ++   G+ G    A   F   +      +
Sbjct: 237 YAVAQDLRGAIACVEEMEAEGVSPNAATYSVIISGYGRLGDVEAAERWFQRALSENWHHN 296

Query: 362 EKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFE 421
           +     +I  Y KA   + A  +   M E        LYN L++       V++   +F 
Sbjct: 297 DVIYNNIIHAYCKAGNMERAEAIMTAMEEQGLEATLGLYNMLMDGYVHCRAVDKCLNVFR 356

Query: 422 DMKLSDYC--KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479
            +K        P   SY  ++N+Y   G +D A+++  EM + G+  N    + +I    
Sbjct: 357 RLKARTETGLSPTVVSYGCLINLYSKLGKMDKALQISNEMEDQGIKHNRKTYSMIIDGYV 416

Query: 480 KARRIDDLVRVFGVSIDRGVKPD 502
           +     +   VF    + G+KPD
Sbjct: 417 QLGDTANAFSVFEDMSNAGIKPD 439


>gi|147742764|gb|ABQ50546.1| hypothetical protein [Brassica rapa]
          Length = 650

 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 91/336 (27%), Positives = 160/336 (47%), Gaps = 7/336 (2%)

Query: 187 TIFYNVTMKSLRF-GRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           T+ +N  +  L   GR F+ +E L + MV ++   D IT +TI+      +   EA++  
Sbjct: 160 TVTFNTLLNGLCLEGRVFEAVE-LVDCMVLSQHVPDLITLNTIVNGLCLKDRVSEAVDLI 218

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
            RM   G  P++ TY  IL+   KSG     L L  +      KP  + ++++     + 
Sbjct: 219 ARMMANGCQPNQFTYGPILNRMCKSGNTASALDLLRKMEHRKIKPHVVTYTIIIDNLCKD 278

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G  D       EM++ G++ N+  YN+L+ +    G+      L  +M+   +TP+  T 
Sbjct: 279 GRLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDMITRKITPNVVTF 338

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL-NMCADIGLVEEAERLFEDMK 424
           +ALI    K     +A +L+  M       + I YN+L+  +C D  L +EA ++  D+ 
Sbjct: 339 SALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIYGLCNDKRL-DEANQMM-DLM 396

Query: 425 LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484
           +S  C PD ++Y  ++N +     VD+ + LF +MS  G+  + +  + LIQ   ++R++
Sbjct: 397 VSKGCDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQGFCQSRKL 456

Query: 485 DDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSE 520
               +VF   + +GV P       LL    LC+  E
Sbjct: 457 IVAKKVFQEMVSQGVHPGIMTYAILLD--GLCDNGE 490



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 122/259 (47%), Gaps = 1/259 (0%)

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
           + L NEM++  IE + ITY+++I         DEA +  + M   G  PD  TY+ +++ 
Sbjct: 355 KDLYNEMITRGIEPNTITYNSLIYGLCNDKRLDEANQMMDLMVSKGCDPDIWTYNILING 414

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
           + K+ +V++ + L+ +    G   D + +S L + F +S      + V QEM S GV P 
Sbjct: 415 FCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQGVHPG 474

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
           ++ Y  LL+ +   G+   A  + D+M +  +  D      +I     A    DA  L+ 
Sbjct: 475 IMTYAILLDGLCDNGELEEALGILDQMHKCKMELDIGIYNIIIHGMCNANKVDDAWSLFC 534

Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
            +       D   YN +L+       + EA+ LF  MK   Y +PD  +Y  ++  +  G
Sbjct: 535 SLPSKGVKRDIQSYNIMLSGLCKRSSLSEADALFRKMKEDGY-EPDGCTYNTLIRAHLRG 593

Query: 447 GNVDNAIELFEEMSELGVA 465
            ++  +++L EEM   G +
Sbjct: 594 NDITTSVQLIEEMKRCGFS 612



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 146/312 (46%), Gaps = 5/312 (1%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  +M   +I+   +TY+ II    +    D+A+ +F  M   G+  +  TY++++  + 
Sbjct: 252 LLRKMEHRKIKPHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFC 311

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
             G+ ++   L    +     P+ + FS L     + G     + +  EM + G++PN +
Sbjct: 312 SFGRWDDGAQLLRDMITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTI 371

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            YN+L+  +    +   A  + D MV  G  PD  T   LI  + KA+   D + L+ +M
Sbjct: 372 TYNSLIYGLCNDKRLDEANQMMDLMVSKGCDPDIWTYNILINGFCKAKQVDDGMRLFRKM 431

Query: 389 RENKWPMDFILYNTLL-NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
                  D + Y+TL+   C    L+  A+++F++M +S    P   +Y  +L+     G
Sbjct: 432 SLRGMIADTVTYSTLIQGFCQSRKLIV-AKKVFQEM-VSQGVHPGIMTYAILLDGLCDNG 489

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCG 507
            ++ A+ + ++M +  + +++     +I  +  A ++DD   +F     +GVK D +   
Sbjct: 490 ELEEALGILDQMHKCKMELDIGIYNIIIHGMCNANKVDDAWSLFCSLPSKGVKRDIQSYN 549

Query: 508 CLLSVVSLCETS 519
            +LS   LC+ S
Sbjct: 550 IMLS--GLCKRS 559



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 135/320 (42%), Gaps = 2/320 (0%)

Query: 184 PMETIF-YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
           P+ T+  +N     L   +Q+ L+  L  +M    I  D  T + +I C  R      A 
Sbjct: 86  PLPTVIDFNRLFGLLARTKQYDLVLALCKQMELKGIAYDLYTLNIMINCFCRRRKLGFAF 145

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
               +++K G  P+ VT++ +L+     G+V E + L +  V S   PD I  + +    
Sbjct: 146 SAMGKIFKLGYEPNTVTFNTLLNGLCLEGRVFEAVELVDCMVLSQHVPDLITLNTIVNGL 205

Query: 303 GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
                      ++  M + G QPN   Y  +L  M K+G    A  L  +M    + P  
Sbjct: 206 CLKDRVSEAVDLIARMMANGCQPNQFTYGPILNRMCKSGNTASALDLLRKMEHRKIKPHV 265

Query: 363 KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED 422
            T T +I    K     DAL  +  M       +   YN+L+      G  ++  +L  D
Sbjct: 266 VTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRD 325

Query: 423 MKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKAR 482
           M ++    P+  +++A+++     G +  A +L+ EM   G+  N +    LI  L   +
Sbjct: 326 M-ITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIYGLCNDK 384

Query: 483 RIDDLVRVFGVSIDRGVKPD 502
           R+D+  ++  + + +G  PD
Sbjct: 385 RLDEANQMMDLMVSKGCDPD 404



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/253 (22%), Positives = 121/253 (47%), Gaps = 8/253 (3%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            +N + ++ + P  TI YN  +  L   ++     Q+ + MVS   + D  TY+ +I   
Sbjct: 357 LYNEMITRGIEP-NTITYNSLIYGLCNDKRLDEANQMMDLMVSKGCDPDIWTYNILINGF 415

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +    D+ +  F +M   G++ D VTYS ++  + +S K+     +++  V+ G  P  
Sbjct: 416 CKAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQGVHPGI 475

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           + +++L     ++G+ +    +L +M    ++ ++ +YN ++  M  A K   A SLF  
Sbjct: 476 MTYAILLDGLCDNGELEEALGILDQMHKCKMELDIGIYNIIIHGMCNANKVDDAWSLFCS 535

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL-------N 405
           +   G+  D ++   ++    K     +A  L+ +M+E+ +  D   YNTL+       +
Sbjct: 536 LPSKGVKRDIQSYNIMLSGLCKRSSLSEADALFRKMKEDGYEPDGCTYNTLIRAHLRGND 595

Query: 406 MCADIGLVEEAER 418
           +   + L+EE +R
Sbjct: 596 ITTSVQLIEEMKR 608



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/199 (20%), Positives = 89/199 (44%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           +T+ Y+  ++     R+  + +++  EMVS  +    +TY+ ++         +EA+   
Sbjct: 439 DTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQGVHPGIMTYAILLDGLCDNGELEEALGIL 498

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           ++M+K  +  D   Y+ I+     + KV++  SL+    + G K D  +++++     + 
Sbjct: 499 DQMHKCKMELDIGIYNIIIHGMCNANKVDDAWSLFCSLPSKGVKRDIQSYNIMLSGLCKR 558

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
                   + ++MK  G +P+   YNTL+ A  +      +  L +EM   G + D  T+
Sbjct: 559 SSLSEADALFRKMKEDGYEPDGCTYNTLIRAHLRGNDITTSVQLIEEMKRCGFSSDASTV 618

Query: 366 TALIKIYGKARWAKDALEL 384
             ++ +       K  L +
Sbjct: 619 KIVMDMLSSGELDKSFLNM 637


>gi|334183590|ref|NP_176479.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179661|sp|Q9LQ16.1|PPR94_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62910
 gi|8493578|gb|AAF75801.1|AC011000_4 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats [Arabidopsis thaliana]
 gi|332195899|gb|AEE34020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 632

 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 78/259 (30%), Positives = 131/259 (50%), Gaps = 1/259 (0%)

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
           E+L +EM+   I+ D  TYS++I      +  DEA   FE M      P+ VTYS ++  
Sbjct: 348 EKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKG 407

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
           + K+ +VEE + L+      G   + + ++ L   F ++ D D  + V ++M S+GV PN
Sbjct: 408 FCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPN 467

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
           ++ YN LL+ + K GK   A  +F+ +  S + PD  T   +I+   KA   +D  EL+ 
Sbjct: 468 ILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFC 527

Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
            +       + I YNT+++     G  EEA+ L + MK  D   P++ +Y  ++      
Sbjct: 528 NLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMK-EDGPLPNSGTYNTLIRARLRD 586

Query: 447 GNVDNAIELFEEMSELGVA 465
           G+ + + EL +EM   G A
Sbjct: 587 GDREASAELIKEMRSCGFA 605



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 94/364 (25%), Positives = 174/364 (47%), Gaps = 40/364 (10%)

Query: 172 FFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITC 231
            F + +KS+  FP   + +N  + ++    +F+L+  L  +M +  I  D  TYS  I C
Sbjct: 70  LFGDMVKSRP-FP-SIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINC 127

Query: 232 AKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291
             R +    A+    +M K G  PD VT S++L+ Y  S ++ + ++L ++ V  G+KPD
Sbjct: 128 FCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPD 187

Query: 292 PIAFSVL--------------------------------GKMFG---ESGDYDGIRYVLQ 316
              F+ L                                G +     + GD D    +L+
Sbjct: 188 TFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLK 247

Query: 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK-IYGKA 375
           +M+   ++ ++V+YNT+++ + K      A +LF EM   G+ PD  T ++LI  +    
Sbjct: 248 KMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYG 307

Query: 376 RWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYS 435
           RW+ DA  L   M E K   + + ++ L++     G + EAE+L+++M +     PD ++
Sbjct: 308 RWS-DASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEM-IKRSIDPDIFT 365

Query: 436 YTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSI 495
           Y++++N +     +D A  +FE M       NV+  + LI+   KA+R+++ + +F    
Sbjct: 366 YSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMS 425

Query: 496 DRGV 499
            RG+
Sbjct: 426 QRGL 429



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 138/290 (47%), Gaps = 1/290 (0%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + YN  +  L   +       L  EM +  I  D  TYS++I+C      + +A    
Sbjct: 257 DVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLL 316

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
             M +  + P+ VT+SA++D + K GK+ E   LY+  +     PD   +S L   F   
Sbjct: 317 SDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMH 376

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
              D  +++ + M S    PN+V Y+TL++   KA +      LF EM + GL  +  T 
Sbjct: 377 DRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTY 436

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
           T LI  + +AR   +A  ++++M       + + YN LL+     G + +A  +FE ++ 
Sbjct: 437 TTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQR 496

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLI 475
           S   +PD Y+Y  M+      G V++  ELF  +S  GV+ NV+    +I
Sbjct: 497 STM-EPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMI 545



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 90/368 (24%), Positives = 169/368 (45%), Gaps = 11/368 (2%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L ++MV    + D +TY T++    +    D A+   ++M K  +  D V Y+ I+D   
Sbjct: 210 LVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLC 269

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           K   +++ L+L+      G +PD   +S L       G +     +L +M    + PN+V
Sbjct: 270 KYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVV 329

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            ++ L++A  K GK   A  L+DEM++  + PD  T ++LI  +       +A  ++E M
Sbjct: 330 TFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELM 389

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
                  + + Y+TL+        VEE   LF +M        +  +YT +++ +    +
Sbjct: 390 ISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLV-GNTVTYTTLIHGFFQARD 448

Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGC 508
            DNA  +F++M  +GV  N++    L+  L K  ++   + VF       ++PD      
Sbjct: 449 CDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNI 508

Query: 509 LLSVVSLCETSEDVGKVITC---LQQANPKLVAFLNLIEDNSTGF--ENIKEEFRNVIKD 563
           ++  +      ED G  + C   L+  +P ++A+  +I    +GF  +  KEE  +++K 
Sbjct: 509 MIEGMCKAGKVED-GWELFCNLSLKGVSPNVIAYNTMI----SGFCRKGSKEEADSLLKK 563

Query: 564 TEVDARRP 571
            + D   P
Sbjct: 564 MKEDGPLP 571



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 122/264 (46%), Gaps = 1/264 (0%)

Query: 239 DEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
           D+A++ F  M K+   P  V ++ +L   AK  K E V+SL E+    G   D   +S+ 
Sbjct: 65  DDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIF 124

Query: 299 GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
              F           VL +M  LG +P++V  ++LL     + +   A +L D+MVE G 
Sbjct: 125 INCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGY 184

Query: 359 TPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAER 418
            PD  T T LI        A +A+ L ++M +     D + Y T++N     G ++ A  
Sbjct: 185 KPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALS 244

Query: 419 LFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL 478
           L + M+     + D   Y  +++      ++D+A+ LF EM   G+  +V   + LI CL
Sbjct: 245 LLKKME-KGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCL 303

Query: 479 GKARRIDDLVRVFGVSIDRGVKPD 502
               R  D  R+    I+R + P+
Sbjct: 304 CNYGRWSDASRLLSDMIERKINPN 327



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/280 (22%), Positives = 135/280 (48%), Gaps = 1/280 (0%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           + ++ +++   + N F+  I   E+M   G+  D  TYS  ++ + +  ++   L++  +
Sbjct: 84  VEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAK 143

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
            +  G++PD +  S L   +  S        ++ +M  +G +P+   + TL+  +    K
Sbjct: 144 MMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNK 203

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
              A +L D+MV+ G  PD  T   ++    K      AL L ++M + K   D ++YNT
Sbjct: 204 ASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNT 263

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
           +++       +++A  LF +M  +   +PD ++Y+++++   + G   +A  L  +M E 
Sbjct: 264 IIDGLCKYKHMDDALNLFTEMD-NKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIER 322

Query: 463 GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            +  NV+  + LI    K  ++ +  +++   I R + PD
Sbjct: 323 KINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPD 362



 Score = 79.7 bits (195), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 111/236 (47%), Gaps = 1/236 (0%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           F  + S++ FP   + Y+  +K     ++ +   +L  EM    +  + +TY+T+I    
Sbjct: 386 FELMISKDCFP-NVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFF 444

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
           +    D A   F++M   G+ P+ +TY+ +LD   K+GK+ + + ++E    S  +PD  
Sbjct: 445 QARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIY 504

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
            ++++ +   ++G  +    +   +   GV PN++ YNT++    + G    A SL  +M
Sbjct: 505 TYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKM 564

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCAD 409
            E G  P+  T   LI+   +    + + EL + MR   +  D      + NM  D
Sbjct: 565 KEDGPLPNSGTYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNMLHD 620



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 91/206 (44%)

Query: 179 SQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLF 238
           SQ      T+ Y   +      R     + +  +MVS  +  + +TY+ ++    +    
Sbjct: 425 SQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKL 484

Query: 239 DEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
            +A+  FE + ++ + PD  TY+ +++   K+GKVE+   L+      G  P+ IA++ +
Sbjct: 485 AKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTM 544

Query: 299 GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
              F   G  +    +L++MK  G  PN   YNTL+ A  + G    +  L  EM   G 
Sbjct: 545 ISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIKEMRSCGF 604

Query: 359 TPDEKTLTALIKIYGKARWAKDALEL 384
             D  T+  +  +    R  K  L++
Sbjct: 605 AGDASTIGLVTNMLHDGRLDKSFLDM 630


>gi|356558071|ref|XP_003547332.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 152/312 (48%), Gaps = 33/312 (10%)

Query: 212 EMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG 271
           +M     E D  TY+ +I    + +  DEA+  F+ M   G  P+ + Y+ +++  AK  
Sbjct: 256 DMKRRHCEPDVFTYTIMIRMTGKSSKTDEALALFQAMLAKGCTPNLIGYNTMIEALAKGR 315

Query: 272 KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGI--------RYVLQEMKSLGV 323
            V++ + L+ + V +  +P+   +SV+  +    G  + +        +Y+ +++ +  V
Sbjct: 316 MVDKAVLLFSKMVENDIQPNEFTYSVILNLLVAEGKLNKLDNIVDISKKYINKQIYAYFV 375

Query: 324 QP---------------NLVVYN---------TLLEAMGKAGKPGLARSLFDEMVESGLT 359
           +                N+  ++         ++LE++  AGK   A  L +++ E G+T
Sbjct: 376 RTLSKVGHASEAHRLFCNMWNFHDKGDKDACMSMLESLCSAGKMTEAIDLLNKIHEKGIT 435

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
            D      +    G+ +      +L+E+M+++  P D   YN L++     G V+ A + 
Sbjct: 436 TDTIMYNTVFTALGRLKQISHIHDLYEKMKQDGPPPDIFTYNILISSFGRAGRVDIAVKF 495

Query: 420 FEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479
           FE+++ SD CKPD  SY +++N  G  G+VD A   F+EM E G+  +V+  + LI+C G
Sbjct: 496 FEELENSD-CKPDVISYNSLINCLGKNGDVDEAHMRFKEMQEKGLNPDVVTYSTLIECFG 554

Query: 480 KARRIDDLVRVF 491
           K  +++   R+F
Sbjct: 555 KTDKVEMACRLF 566



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 90/382 (23%), Positives = 171/382 (44%), Gaps = 44/382 (11%)

Query: 159 LILNSLKFWQK--SYFFFNWIKSQNLFP---METIFYNVTMKSLRFGRQFQLIEQLANEM 213
           ++L++L   +K  SY  F  +K ++  P     TI   +T KS +      L +     M
Sbjct: 237 MLLDALAKDEKVCSYKVFEDMKRRHCEPDVFTYTIMIRMTGKSSKTDEALALFQA----M 292

Query: 214 VSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKV 273
           ++     + I Y+T+I    +  + D+A+  F +M +  + P+E TYS IL++    GK+
Sbjct: 293 LAKGCTPNLIGYNTMIEALAKGRMVDKAVLLFSKMVENDIQPNEFTYSVILNLLVAEGKL 352

Query: 274 ---------------EEVLSLYERGVASGWKPDPIAFSVLGKM--FGESGDYDGIRYVLQ 316
                          +++ + + R ++        A  +   M  F + GD D    +L+
Sbjct: 353 NKLDNIVDISKKYINKQIYAYFVRTLSKVGHASE-AHRLFCNMWNFHDKGDKDACMSMLE 411

Query: 317 EMKSLG----------------VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTP 360
            + S G                +  + ++YNT+  A+G+  +      L+++M + G  P
Sbjct: 412 SLCSAGKMTEAIDLLNKIHEKGITTDTIMYNTVFTALGRLKQISHIHDLYEKMKQDGPPP 471

Query: 361 DEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLF 420
           D  T   LI  +G+A     A++ +E +  +    D I YN+L+N     G V+EA   F
Sbjct: 472 DIFTYNILISSFGRAGRVDIAVKFFEELENSDCKPDVISYNSLINCLGKNGDVDEAHMRF 531

Query: 421 EDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK 480
           ++M+      PD  +Y+ ++  +G    V+ A  LF+EM       N++    L+ CL +
Sbjct: 532 KEMQ-EKGLNPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEECTPNLITYNILLDCLER 590

Query: 481 ARRIDDLVRVFGVSIDRGVKPD 502
           + R  + V ++     +G+ PD
Sbjct: 591 SGRTAEAVDLYAKLKQQGLTPD 612



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 106/204 (51%), Gaps = 1/204 (0%)

Query: 200 GRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVT 259
           G+  + I+ L N++    I  D I Y+T+ T   R        + +E+M + G  PD  T
Sbjct: 417 GKMTEAID-LLNKIHEKGITTDTIMYNTVFTALGRLKQISHIHDLYEKMKQDGPPPDIFT 475

Query: 260 YSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMK 319
           Y+ ++  + ++G+V+  +  +E    S  KPD I+++ L    G++GD D      +EM+
Sbjct: 476 YNILISSFGRAGRVDIAVKFFEELENSDCKPDVISYNSLINCLGKNGDVDEAHMRFKEMQ 535

Query: 320 SLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAK 379
             G+ P++V Y+TL+E  GK  K  +A  LFDEM+    TP+  T   L+    ++    
Sbjct: 536 EKGLNPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEECTPNLITYNILLDCLERSGRTA 595

Query: 380 DALELWERMRENKWPMDFILYNTL 403
           +A++L+ ++++     D I Y  L
Sbjct: 596 EAVDLYAKLKQQGLTPDSITYAVL 619



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 104/209 (49%), Gaps = 2/209 (0%)

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           EAI+   ++++ G+  D + Y+ +     +  ++  +  LYE+    G  PD   +++L 
Sbjct: 421 EAIDLLNKIHEKGITTDTIMYNTVFTALGRLKQISHIHDLYEKMKQDGPPPDIFTYNILI 480

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
             FG +G  D      +E+++   +P+++ YN+L+  +GK G    A   F EM E GL 
Sbjct: 481 SSFGRAGRVDIAVKFFEELENSDCKPDVISYNSLINCLGKNGDVDEAHMRFKEMQEKGLN 540

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
           PD  T + LI+ +GK    + A  L++ M   +   + I YN LL+     G   EA  L
Sbjct: 541 PDVVTYSTLIECFGKTDKVEMACRLFDEMLAEECTPNLITYNILLDCLERSGRTAEAVDL 600

Query: 420 FEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
           +  +K      PD+ +Y A+L    SGG+
Sbjct: 601 YAKLK-QQGLTPDSITY-AVLERLQSGGH 627



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 101/198 (51%), Gaps = 4/198 (2%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           +TI YN    +L   +Q   I  L  +M  +    D  TY+ +I+   R    D A+++F
Sbjct: 437 DTIMYNTVFTALGRLKQISHIHDLYEKMKQDGPPPDIFTYNILISSFGRAGRVDIAVKFF 496

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           E +  +   PD ++Y+++++   K+G V+E    ++     G  PD + +S L + FG++
Sbjct: 497 EELENSDCKPDVISYNSLINCLGKNGDVDEAHMRFKEMQEKGLNPDVVTYSTLIECFGKT 556

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
              +    +  EM +    PNL+ YN LL+ + ++G+   A  L+ ++ + GLTPD  T 
Sbjct: 557 DKVEMACRLFDEMLAEECTPNLITYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSITY 616

Query: 366 TALIKI----YGKARWAK 379
             L ++    +GK R+ +
Sbjct: 617 AVLERLQSGGHGKLRFRR 634



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 131/290 (45%), Gaps = 13/290 (4%)

Query: 217 EIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV 276
           ++ L+  TY  ++    R      A   +  M + G   D   Y+ +LD  AK  KV   
Sbjct: 192 DLRLNAYTYKCLLQAYLRALDSSTAFRVYLDMIRHGYRLDIFGYNMLLDALAKDEKVCSY 251

Query: 277 LSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA 336
             ++E       +PD   ++++ +M G+S   D    + Q M + G  PNL+ YNT++EA
Sbjct: 252 -KVFEDMKRRHCEPDVFTYTIMIRMTGKSSKTDEALALFQAMLAKGCTPNLIGYNTMIEA 310

Query: 337 MGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIY---GKARWAKDALELWERMRENKW 393
           + K      A  LF +MVE+ + P+E T + ++ +    GK     + +++ ++    + 
Sbjct: 311 LAKGRMVDKAVLLFSKMVENDIQPNEFTYSVILNLLVAEGKLNKLDNIVDISKKYINKQ- 369

Query: 394 PMDFILYNTLLNMCADIGLVEEAERLFEDM-KLSDYCKPDNYSYTAMLNIYGSGGNVDNA 452
                +Y   +   + +G   EA RLF +M    D  K D  +  +ML    S G +  A
Sbjct: 370 -----IYAYFVRTLSKVGHASEAHRLFCNMWNFHD--KGDKDACMSMLESLCSAGKMTEA 422

Query: 453 IELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           I+L  ++ E G+  + +    +   LG+ ++I  +  ++      G  PD
Sbjct: 423 IDLLNKIHEKGITTDTIMYNTVFTALGRLKQISHIHDLYEKMKQDGPPPD 472



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 105/207 (50%), Gaps = 7/207 (3%)

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES-GLTPDEKTLT 366
           +D  R +L +M    V+ ++   N L+   G AG+  L R +   +V+   L  +  T  
Sbjct: 146 FDQARSLLHDMDRRAVRGSISTVNILVGFFG-AGE-DLERCV--SLVKKWDLRLNAYTYK 201

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
            L++ Y +A  +  A  ++  M  + + +D   YN LL+  A    V  + ++FEDMK  
Sbjct: 202 CLLQAYLRALDSSTAFRVYLDMIRHGYRLDIFGYNMLLDALAKDEKVC-SYKVFEDMK-R 259

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
            +C+PD ++YT M+ + G     D A+ LF+ M   G   N++G   +I+ L K R +D 
Sbjct: 260 RHCEPDVFTYTIMIRMTGKSSKTDEALALFQAMLAKGCTPNLIGYNTMIEALAKGRMVDK 319

Query: 487 LVRVFGVSIDRGVKPDDRLCGCLLSVV 513
            V +F   ++  ++P++     +L+++
Sbjct: 320 AVLLFSKMVENDIQPNEFTYSVILNLL 346


>gi|255660860|gb|ACU25599.1| pentatricopeptide repeat-containing protein [Petrea racemosa]
          Length = 418

 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 85/316 (26%), Positives = 149/316 (47%), Gaps = 3/316 (0%)

Query: 148 IPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIE 207
           +P    R N L  L   K+++  + F+  I     +P    F+N+ M       + +L +
Sbjct: 99  VPFDTCR-NVLEHLMKXKYFKLVWGFYKEILECG-YPASLYFFNILMHRFCKEGEMRLAQ 156

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
            + + +    +    ++++T++    +    DE       M  +G+ PD  TYS +++  
Sbjct: 157 SVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMRASGVQPDVYTYSVLINGL 216

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            K  +++E   L+   + +G  P+ + F+ L     ++G  D    + ++M + G  P++
Sbjct: 217 CKESRMDEANGLFGEMLDNGLVPNGVTFTTLIDGHCKNGRLDLAMDIYRQMLNQGFSPDV 276

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
           V YNTL+  + K G    AR L DEM   GL PD+ T T LI    K    + A EL ER
Sbjct: 277 VTYNTLIYGLCKKGDLKQARYLLDEMSRKGLKPDKITYTTLIDGSCKEGDLETAFELRER 336

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           M +    +D ++Y  L+      G   +AE++  +M L    KPD+ +YT ++N +   G
Sbjct: 337 MIKESIRLDDVVYTALIFGLCQEGRAVDAEKMLREM-LRVGLKPDDETYTMIMNEFCKKG 395

Query: 448 NVDNAIELFEEMSELG 463
           +V  A EL  EM   G
Sbjct: 396 DVKKASELLREMQRNG 411



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 124/244 (50%), Gaps = 1/244 (0%)

Query: 260 YSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMK 319
           ++ ++  + K G++    S+++     G +P  ++F+ L   + + GD D    +   M+
Sbjct: 139 FNILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMR 198

Query: 320 SLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAK 379
           + GVQP++  Y+ L+  + K  +   A  LF EM+++GL P+  T T LI  + K     
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESRMDEANGLFGEMLDNGLVPNGVTFTTLIDGHCKNGRLD 258

Query: 380 DALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAM 439
            A++++ +M    +  D + YNTL+      G +++A  L ++M      KPD  +YT +
Sbjct: 259 LAMDIYRQMLNQGFSPDVVTYNTLIYGLCKKGDLKQARYLLDEMSRKGL-KPDKITYTTL 317

Query: 440 LNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGV 499
           ++     G+++ A EL E M +  + ++ +  T LI  L +  R  D  ++    +  G+
Sbjct: 318 IDGSCKEGDLETAFELRERMIKESIRLDDVVYTALIFGLCQEGRAVDAEKMLREMLRVGL 377

Query: 500 KPDD 503
           KPDD
Sbjct: 378 KPDD 381



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 68/146 (46%)

Query: 183 FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
           F  + + YN  +  L      +    L +EM    ++ D ITY+T+I  + +    + A 
Sbjct: 272 FSPDVVTYNTLIYGLCKKGDLKQARYLLDEMSRKGLKPDKITYTTLIDGSCKEGDLETAF 331

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
           E  ERM K  +  D+V Y+A++    + G+  +   +    +  G KPD   ++++   F
Sbjct: 332 ELRERMIKESIRLDDVVYTALIFGLCQEGRAVDAEKMLREMLRVGLKPDDETYTMIMNEF 391

Query: 303 GESGDYDGIRYVLQEMKSLGVQPNLV 328
            + GD      +L+EM+  G  P +V
Sbjct: 392 CKKGDVKKASELLREMQRNGRVPCVV 417


>gi|242036829|ref|XP_002465809.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
 gi|241919663|gb|EER92807.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
          Length = 649

 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 141/282 (50%), Gaps = 5/282 (1%)

Query: 186 ETIFYNVTMKSLRFGRQFQLI--EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           + + YN  +  L   +Q +L+  E+L NEM    +  D  T++T+I    R   F++A++
Sbjct: 366 DVVTYNTLLNGL--CKQHRLLDAEELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQ 423

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
            F+ +    L PD V Y++++D   + G + +   L++   A    P+ + +S+L     
Sbjct: 424 LFDTLLHQRLRPDVVAYNSLIDGMCRKGDLAKANELWDDMHAREIFPNHVTYSILIDSHC 483

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
           E G  +     L EM S G  PN++ YN++++   ++G     +    +M++  + PD  
Sbjct: 484 EKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQFLQKMMQDNILPDLI 543

Query: 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
           T   LI  Y K      A  ++  M +     D + YN ++N  ++ G +EEA R+F+ M
Sbjct: 544 TFNTLIHGYIKEENMHGAFNVFNIMEKEMVQPDAVTYNMIINGFSEQGNMEEAGRVFKKM 603

Query: 424 KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
             S   +PD Y+Y +++N + + GN   A +L +EM   G A
Sbjct: 604 GASG-IEPDRYTYMSLINGHVTAGNSKEAFQLHDEMMHRGFA 644



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 145/289 (50%), Gaps = 1/289 (0%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           + +N  +K L   R+F   +++   M    +  D  +++ +I    R    +EA+++++ 
Sbjct: 228 VTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFCRVGEVEEAMKFYKE 287

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M + G+ PD V++S ++ +++  GK++   +        G  PD + ++++   F  +G 
Sbjct: 288 MQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGVIYTMVIGGFCRAGS 347

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
                 V  EM  LG  P++V YNTLL  + K  +   A  L +EM E G+TPD  T T 
Sbjct: 348 MSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKERGVTPDLCTFTT 407

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           LI  Y +    + AL+L++ +   +   D + YN+L++     G + +A  L++DM   +
Sbjct: 408 LIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDLAKANELWDDMHARE 467

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
              P++ +Y+ +++ +   G V+ A    +EM   G   N+M    +I+
Sbjct: 468 IF-PNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIK 515



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/299 (23%), Positives = 137/299 (45%), Gaps = 1/299 (0%)

Query: 204 QLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAI 263
            L E+    ++S++ E++  T + ++    +   FD+A      M K  + PD VT++ +
Sbjct: 139 HLAEEAYRLVLSSDSEVNAYTLNIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVL 198

Query: 264 LDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGV 323
           +D   ++G V+  ++L +     G KP  + F+ + K   +   +D  + V + M    V
Sbjct: 199 IDARFRAGDVDAAIALVDSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSV 258

Query: 324 QPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALE 383
            P++  +N L+    + G+   A   + EM + G+TPD  + + LI ++        A  
Sbjct: 259 APDVRSFNILIGGFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAA 318

Query: 384 LWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIY 443
               M+      D ++Y  ++      G + EA R+ ++M +   C PD  +Y  +LN  
Sbjct: 319 YLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEM-VGLGCLPDVVTYNTLLNGL 377

Query: 444 GSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
                + +A EL  EM E GV  ++   T LI    +    +  +++F   + + ++PD
Sbjct: 378 CKQHRLLDAEELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPD 436



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 133/295 (45%), Gaps = 3/295 (1%)

Query: 191 NVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYK 250
           N+ + S     +F   + + +EM    +  D +T++ +I    R    D AI   + M  
Sbjct: 161 NIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSMAN 220

Query: 251 TGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDG 310
            GL P  VT++++L    K  + ++   ++         PD  +F++L   F   G+ + 
Sbjct: 221 KGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFCRVGEVEE 280

Query: 311 IRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK 370
                +EM+  GV P++V ++ L+      GK   A +   EM   GL PD    T +I 
Sbjct: 281 AMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGVIYTMVIG 340

Query: 371 IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCK 430
            + +A    +AL + + M       D + YNTLLN       + +AE L  +MK      
Sbjct: 341 GFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMK-ERGVT 399

Query: 431 PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
           PD  ++T +++ Y   GN + A++LF+ +    +  +V+    LI   G  R+ D
Sbjct: 400 PDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLID--GMCRKGD 452


>gi|297746120|emb|CBI16176.3| unnamed protein product [Vitis vinifera]
          Length = 819

 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 91/338 (26%), Positives = 144/338 (42%), Gaps = 11/338 (3%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            FN +  + LFP + + Y++ + S     +  +      +M    I+     YS++I+  
Sbjct: 377 LFNNMGHKGLFPND-VTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGH 435

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +      A   F+ M   GL P+ V Y++++  Y K G++     LY      G  P+ 
Sbjct: 436 CKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNT 495

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
             F+ L      +        +  EM    V PN V YN L+E   K G    A  L DE
Sbjct: 496 YTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDE 555

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPM--------DFILYNTLL 404
           MVE GL PD  T   LI          +A E    ++  +  +        + + Y  L+
Sbjct: 556 MVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEIEGCLPNVVTYTALI 615

Query: 405 NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
           N    IGL+++AE L  +M L+    P+  +Y   L+   S GN++ AI+L + + E G 
Sbjct: 616 NGLCKIGLMDKAELLCREM-LASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLLE-GF 673

Query: 465 AINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
             N +    LI+   K  RI +   V    ID G+ PD
Sbjct: 674 LANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPD 711



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 144/313 (46%), Gaps = 2/313 (0%)

Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS 261
           +F+  E++ NEM+           S ++   ++      A +   ++ K G+ P    Y+
Sbjct: 300 EFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYN 359

Query: 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
           A+++   K GK++E  SL+      G  P+ + +S+L   F + G  D   + L +M  +
Sbjct: 360 ALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEV 419

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
           G++  +  Y++L+    K GK   A+SLFDEM+ +GL P+    T+LI  Y K     +A
Sbjct: 420 GIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNA 479

Query: 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
             L+  M       +   +  L++       + EA +LF +M   +   P+  +Y  ++ 
Sbjct: 480 FRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVI-PNEVTYNVLIE 538

Query: 442 IYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
            +   GN   A EL +EM E G+  +      LI  L    R+ +  R F   +    + 
Sbjct: 539 GHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSE-AREFMNDLQGEQQK 597

Query: 502 DDRLCGCLLSVVS 514
            + + GCL +VV+
Sbjct: 598 LNEIEGCLPNVVT 610



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 141/313 (45%), Gaps = 30/313 (9%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           +L +EM    I  +  T++ +I+     N   EA + F  M +  ++P+EVTY+ +++ +
Sbjct: 481 RLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGH 540

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG----------DYDGIRYVLQE 317
            K G       L +  V  G  PD   +  L      +G          D  G +  L E
Sbjct: 541 CKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNE 600

Query: 318 MKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARW 377
           ++  G  PN+V Y  L+  + K G    A  L  EM+ S   P++ T    +        
Sbjct: 601 IE--GCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGN 658

Query: 378 AKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYT 437
            + A++L + + E  +  + + YN L+     +G ++EA  +  +M +     PD  SY+
Sbjct: 659 IEKAIQLHDVLLEG-FLANTVTYNILIRGFCKLGRIQEAAEVLVNM-IDSGISPDCISYS 716

Query: 438 AMLNIYGSGGNVDNAIELFEEMSELG-----VAIN--VMGCTCLIQCLGKARRI-DDLVR 489
            ++  Y   G++  AI+L+E M   G     VA N  + GC C+   L KA  + DD++R
Sbjct: 717 TIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGC-CVTGELTKAFELRDDMMR 775

Query: 490 VFGVSIDRGVKPD 502
                  RGVKP+
Sbjct: 776 -------RGVKPN 781



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/316 (23%), Positives = 136/316 (43%), Gaps = 7/316 (2%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YNV ++ L   ++     ++ N +    +  D  TY T++    +   F+   E    M 
Sbjct: 253 YNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMMNEMI 312

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
           + G +P E   S ++D   K G +     L  +    G  P    ++ L     + G  D
Sbjct: 313 EFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLD 372

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               +   M   G+ PN V Y+ L+++  K GK  +A     +M E G+       ++LI
Sbjct: 373 EAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLI 432

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
             + K    + A  L++ M  N    + ++Y +L++     G +  A RL+ +M      
Sbjct: 433 SGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMT-GKGI 491

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
            P+ Y++TA+++       +  A +LF EM E  V  N +    LI+  G  +   + VR
Sbjct: 492 SPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIE--GHCKE-GNTVR 548

Query: 490 VFGV---SIDRGVKPD 502
            F +    +++G+ PD
Sbjct: 549 AFELLDEMVEKGLVPD 564



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 127/294 (43%), Gaps = 44/294 (14%)

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M   G++P   T S +L+   +  +    L L++  V+SG +PD   ++ + +   E  D
Sbjct: 171 MMDCGILPQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKD 230

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP------------------------ 343
           +   R V+  M+S G   ++  YN  +  + K  +                         
Sbjct: 231 FIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCT 290

Query: 344 ---GLAR--------SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENK 392
              GL +         + +EM+E G  P E  ++ L+    K      A +L  ++++  
Sbjct: 291 LVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFG 350

Query: 393 WPMDFILYNTLLN-MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDN 451
                 +YN L+N MC D G ++EAE LF +M       P++ +Y+ +++ +   G +D 
Sbjct: 351 VAPSLFVYNALINSMCKD-GKLDEAESLFNNMGHKGL-FPNDVTYSILIDSFCKRGKLDV 408

Query: 452 AIELFEEMSELGVAINVMGCTCLI--QC-LGKARRIDDLVRVFGVSIDRGVKPD 502
           A+    +M+E+G+   V   + LI   C LGK R    L   F   I  G+KP+
Sbjct: 409 ALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSL---FDEMIANGLKPN 459



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 125/278 (44%), Gaps = 13/278 (4%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKS-LRFGRQFQLIEQLANEMVSNEIELDNITYSTIITC 231
            F  +   N+ P E + YNV ++   + G   +  E L +EMV   +  D  TY  +I+ 
Sbjct: 517 LFGEMVEWNVIPNE-VTYNVLIEGHCKEGNTVRAFE-LLDEMVEKGLVPDTYTYRPLISG 574

Query: 232 AKRCNLFDEAIEWFERMYKT--------GLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
                   EA E+   +           G +P+ VTY+A+++   K G +++   L    
Sbjct: 575 LCSTGRVSEAREFMNDLQGEQQKLNEIEGCLPNVVTYTALINGLCKIGLMDKAELLCREM 634

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
           +AS   P+   ++         G+ +     L ++   G   N V YN L+    K G+ 
Sbjct: 635 LASNSLPNQNTYACFLDYLTSEGNIEK-AIQLHDVLLEGFLANTVTYNILIRGFCKLGRI 693

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
             A  +   M++SG++PD  + + +I  Y +    K+A++LWE M       D + YN L
Sbjct: 694 QEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFL 753

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
           +  C   G + +A  L +DM +    KP+  +Y ++++
Sbjct: 754 IYGCCVTGELTKAFELRDDM-MRRGVKPNRATYNSLIH 790


>gi|410110081|gb|AFV61120.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           camara]
          Length = 381

 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 83/366 (22%), Positives = 171/366 (46%), Gaps = 6/366 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K     P + + YN  +      + F+    L +EM +  +  +  +YS
Sbjct: 20  YSKAISIFSRLKRSGFTP-DLVAYNAMINVFGKAKLFREARSLISEMKTAGVXPNTTSYS 78

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY + G  +E   L+      
Sbjct: 79  TLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 138

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   ++ N+V YN+++   GK  +   A
Sbjct: 139 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKA 198

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R +   +D IL+ T++  
Sbjct: 199 NNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVA 258

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K     +PDN      ++I    G ++ A  +F +  + G   
Sbjct: 259 YERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVK 313

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           ++     +I  L K ++  ++V VF      G  PD  +   +L+     +  +    V 
Sbjct: 314 DITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSNVITVVLNAYGKLQEFDKANDVY 373

Query: 527 TCLQQA 532
             +Q+ 
Sbjct: 374 MEMQEV 379



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 134/261 (51%), Gaps = 1/261 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D + YS +I  +++   + +AI  F R+ ++G  PD V Y+A+++V+ K+    E  SL 
Sbjct: 3   DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLI 62

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
                +G  P+  ++S L  M+ E+  +     V  EM+ +    +L   N +++  G+ 
Sbjct: 63  SEMKTAGVXPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQL 122

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G    A  LF  M + G+ P+  +   L+++YG A    +A+ L+  M+      + + Y
Sbjct: 123 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 182

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           N+++ +       E+A  L ++M+ S   +P++ +Y+ +++I+G  G +D A  LF+++ 
Sbjct: 183 NSMIMIYGKTLEHEKANNLIQEMQ-SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLR 241

Query: 461 ELGVAINVMGCTCLIQCLGKA 481
             GV I+ +    +I    +A
Sbjct: 242 SSGVEIDQILFQTMIVAYERA 262



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 75/180 (41%), Gaps = 31/180 (17%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY- 267
           L  EM S  IE ++ITYSTII+   +    D A   F+++  +G+  D++ +  ++  Y 
Sbjct: 201 LIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYE 260

Query: 268 ------------------------------AKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
                                         A +G++EE   ++ + + +G   D   F  
Sbjct: 261 RAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFER 320

Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
           +  +  +   Y  +  V  +M+ LG  P+  V   +L A GK  +   A  ++ EM E G
Sbjct: 321 MIHLLSKYKKYSNVVEVFDKMRGLGYFPDSNVITVVLNAYGKLQEFDKANDVYMEMQEVG 380



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 69/153 (45%), Gaps = 1/153 (0%)

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
           A+ ++ R++ + +  D + YN ++N+     L  EA  L  +MK +    P+  SY+ +L
Sbjct: 23  AISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAG-VXPNTTSYSTLL 81

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
            +Y        A+ +F EM E+   +++  C  +I   G+     +  ++F      G++
Sbjct: 82  TMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 141

Query: 501 PDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN 533
           P+      LL V    E   +   +   +Q+ N
Sbjct: 142 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKN 174


>gi|410110123|gb|AFV61141.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           macrophylla]
          Length = 381

 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 83/366 (22%), Positives = 171/366 (46%), Gaps = 6/366 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K     P + + YN  +      + F+    L +EM +  +  +  +YS
Sbjct: 20  YSKAISIFSRLKRSGFTP-DLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYS 78

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY + G  +E   L+      
Sbjct: 79  TLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 138

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   ++ N+V YN+++   GK  +   A
Sbjct: 139 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKA 198

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R +   +D IL+ T++  
Sbjct: 199 NNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVA 258

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K     +PDN      ++I    G ++ A  +F +  + G   
Sbjct: 259 YERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVK 313

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           ++     +I  L K ++  ++V VF      G  PD  +   +L+     +  +    V 
Sbjct: 314 DITVFERMIHLLSKXKKYSNVVEVFNKMRGLGYFPDSDVIAXVLNAYGKLQEFDKANDVY 373

Query: 527 TCLQQA 532
             +Q+ 
Sbjct: 374 MEMQEV 379



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 129/247 (52%), Gaps = 1/247 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D + YS +I  +++   + +AI  F R+ ++G  PD V Y+A+++V+ K+    E  SL 
Sbjct: 3   DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLI 62

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
                +G  P+  ++S L  M+ E+  +     V  EM+ +    +L   N +++  G+ 
Sbjct: 63  SEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQL 122

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G    A  LF  M + G+ P+  +   L+++YG A    +A+ L+  M+      + + Y
Sbjct: 123 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 182

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           N+++ +       E+A  L ++M+ S   +P++ +Y+ +++I+G  G +D A  LF+++ 
Sbjct: 183 NSMIMIYGKTLEHEKANNLIQEMQ-SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLR 241

Query: 461 ELGVAIN 467
             GV I+
Sbjct: 242 SSGVEID 248



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 75/180 (41%), Gaps = 31/180 (17%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY- 267
           L  EM S  IE ++ITYSTII+   +    D A   F+++  +G+  D++ +  ++  Y 
Sbjct: 201 LIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYE 260

Query: 268 ------------------------------AKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
                                         A +G++EE   ++ + + +G   D   F  
Sbjct: 261 RAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFER 320

Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
           +  +  +   Y  +  V  +M+ LG  P+  V   +L A GK  +   A  ++ EM E G
Sbjct: 321 MIHLLSKXKKYSNVVEVFNKMRGLGYFPDSDVIAXVLNAYGKLQEFDKANDVYMEMQEVG 380



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 69/153 (45%), Gaps = 1/153 (0%)

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
           A+ ++ R++ + +  D + YN ++N+     L  EA  L  +MK +    P+  SY+ +L
Sbjct: 23  AISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAG-VMPNTTSYSTLL 81

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
            +Y        A+ +F EM E+   +++  C  +I   G+     +  ++F      G++
Sbjct: 82  TMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 141

Query: 501 PDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN 533
           P+      LL V    E   +   +   +Q+ N
Sbjct: 142 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKN 174


>gi|297739653|emb|CBI29835.3| unnamed protein product [Vitis vinifera]
          Length = 852

 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 96/414 (23%), Positives = 178/414 (42%), Gaps = 51/414 (12%)

Query: 130 KLNDCDNTEEAFLRAITEIPHQPTREN-ALLI--LNSLKFWQKSYFFFNWIKSQNLFPME 186
           KLN  D+ E    R +       +R+N  LLI  +  +   + S   F W+K+Q  +   
Sbjct: 106 KLNHWDDVEGLLNRWVGRF----SRKNFPLLIREITQIGSLEHSVQVFRWMKNQKNYCAR 161

Query: 187 TIFYNVTMKSLRFGRQFQLIEQ---LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
              YN+    +R   +  +++Q   L  EM     + D  TY+ +I    R   +  A+ 
Sbjct: 162 NDIYNMM---IRLHARHNIVDQARGLFFEMQKWRCKPDAETYNALINAHGRAGQWRWAMN 218

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
             + M +  + P   TY+ +++    SG  +E L++ ++   +G  PD +  +++   + 
Sbjct: 219 IMDDMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTENGVGPDLVTHNIVLSAYK 278

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES------- 356
               Y  +    + MK   ++P+    N ++  + K G+ G A  +F+ M E        
Sbjct: 279 RGNQYSKVLSYFELMKGTNIRPDTTTLNIVIYCLVKLGQNGKAIDIFNSMKEKRSECYPD 338

Query: 357 ------------------------------GLTPDEKTLTALIKIYGKARWAKDALELWE 386
                                         GL P+  +  ALI  Y      K+A  ++ 
Sbjct: 339 VVTFTTIIHLYSVCGQIENCQTAFNTMLAEGLKPNIVSYNALIGAYASHGMDKEAFSVFN 398

Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
            +++N +  D + Y +LLN     G  E+A ++FE M+  ++CKP+  SY A+++ YGS 
Sbjct: 399 EIKKNGFHPDVVSYTSLLNAYGKSGKPEKAMKVFELMR-RNHCKPNLVSYNALIDAYGSK 457

Query: 447 GNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
           G +  A+E+  EM   GV  N++    L+   G+  +   +  V   +  RG+K
Sbjct: 458 GLLTEAVEILHEMERNGVQPNIVSICTLLAACGRCGQKVKIKSVLSAAELRGIK 511



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 139/315 (44%), Gaps = 36/315 (11%)

Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS 261
           Q +  +   N M++  ++ + ++Y+ +I       +  EA   F  + K G  PD V+Y+
Sbjct: 354 QIENCQTAFNTMLAEGLKPNIVSYNALIGAYASHGMDKEAFSVFNEIKKNGFHPDVVSYT 413

Query: 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
           ++L+ Y KSGK E+ + ++E    +  KP+ ++++ L   +G  G       +L EM+  
Sbjct: 414 SLLNAYGKSGKPEKAMKVFELMRRNHCKPNLVSYNALIDAYGSKGLLTEAVEILHEMERN 473

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
           GVQPN+V   TLL A G+ G+    +S+       G+  +     + I  Y        A
Sbjct: 474 GVQPNIVSICTLLAACGRCGQKVKIKSVLSAAELRGIKLNTTAYNSAIGSYLSVGEYDKA 533

Query: 382 LELWERMRENKWPMDFILYNTLLNMCADI------------------------------- 410
           L L+  MR  K   D + YN L++ C  +                               
Sbjct: 534 LSLYRAMRTKKVKPDPVTYNVLISGCCKMSKYGEALGFLDEMMDLKIPLSKEVYSSVICA 593

Query: 411 ----GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               G V EAE +F  MK+   C+PD  +YTAM++ Y    N + A  LF EM    V  
Sbjct: 594 YSKQGQVTEAESMFTKMKMVG-CRPDVITYTAMIHAYDVAENWEKASALFLEMETDDVQP 652

Query: 467 NVMGCTCLIQCLGKA 481
           + + C+ L++   K 
Sbjct: 653 DSIACSSLMRAFNKG 667



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 145/326 (44%), Gaps = 5/326 (1%)

Query: 136 NTEEAFLRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMK 195
           N  +  LRA    P + T  N +    S   W+++      +    + P + + +N+ + 
Sbjct: 218 NIMDDMLRAAIP-PSRSTYNNLINACGSSGNWKEALNVCKKMTENGVGP-DLVTHNIVLS 275

Query: 196 SLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY--KTGL 253
           + + G Q+  +      M    I  D  T + +I C  +     +AI+ F  M   ++  
Sbjct: 276 AYKRGNQYSKVLSYFELMKGTNIRPDTTTLNIVIYCLVKLGQNGKAIDIFNSMKEKRSEC 335

Query: 254 MPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRY 313
            PD VT++ I+ +Y+  G++E   + +   +A G KP+ ++++ L   +   G       
Sbjct: 336 YPDVVTFTTIIHLYSVCGQIENCQTAFNTMLAEGLKPNIVSYNALIGAYASHGMDKEAFS 395

Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYG 373
           V  E+K  G  P++V Y +LL A GK+GKP  A  +F+ M  +   P+  +  ALI  YG
Sbjct: 396 VFNEIKKNGFHPDVVSYTSLLNAYGKSGKPEKAMKVFELMRRNHCKPNLVSYNALIDAYG 455

Query: 374 KARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDN 433
                 +A+E+   M  N    + +   TLL  C   G   + + +    +L    K + 
Sbjct: 456 SKGLLTEAVEILHEMERNGVQPNIVSICTLLAACGRCGQKVKIKSVLSAAELRG-IKLNT 514

Query: 434 YSYTAMLNIYGSGGNVDNAIELFEEM 459
            +Y + +  Y S G  D A+ L+  M
Sbjct: 515 TAYNSAIGSYLSVGEYDKALSLYRAM 540



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 139/284 (48%), Gaps = 5/284 (1%)

Query: 222 NITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYE 281
           N  Y+ +I    R N+ D+A   F  M K    PD  TY+A+++ + ++G+    +++ +
Sbjct: 162 NDIYNMMIRLHARHNIVDQARGLFFEMQKWRCKPDAETYNALINAHGRAGQWRWAMNIMD 221

Query: 282 RGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG 341
             + +   P    ++ L    G SG++     V ++M   GV P+LV +N +L A  +  
Sbjct: 222 DMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTENGVGPDLVTHNIVLSAYKRGN 281

Query: 342 KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENK---WPMDFI 398
           +     S F+ M  + + PD  TL  +I    K      A++++  M+E +   +P D +
Sbjct: 282 QYSKVLSYFELMKGTNIRPDTTTLNIVIYCLVKLGQNGKAIDIFNSMKEKRSECYP-DVV 340

Query: 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458
            + T++++ +  G +E  +  F  M L++  KP+  SY A++  Y S G    A  +F E
Sbjct: 341 TFTTIIHLYSVCGQIENCQTAFNTM-LAEGLKPNIVSYNALIGAYASHGMDKEAFSVFNE 399

Query: 459 MSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           + + G   +V+  T L+   GK+ + +  ++VF +      KP+
Sbjct: 400 IKKNGFHPDVVSYTSLLNAYGKSGKPEKAMKVFELMRRNHCKPN 443



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 73/342 (21%), Positives = 152/342 (44%), Gaps = 8/342 (2%)

Query: 185 METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEW 244
           + T  YN  + S     ++     L   M + +++ D +TY+ +I+   + + + EA+ +
Sbjct: 512 LNTTAYNSAIGSYLSVGEYDKALSLYRAMRTKKVKPDPVTYNVLISGCCKMSKYGEALGF 571

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
            + M    +   +  YS+++  Y+K G+V E  S++ +    G +PD I ++ +   +  
Sbjct: 572 LDEMMDLKIPLSKEVYSSVICAYSKQGQVTEAESMFTKMKMVGCRPDVITYTAMIHAYDV 631

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
           + +++    +  EM++  VQP+ +  ++L+ A  K G+P     L + M E  +  +  +
Sbjct: 632 AENWEKASALFLEMETDDVQPDSIACSSLMRAFNKGGQPAKVLVLAEFMREKKIPFNNSS 691

Query: 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
              ++      R  ++ + L + M  +   +   L N LL+     G +E   +LF  + 
Sbjct: 692 FFEMVSACSLLREWREIIGLIKLMEPSISVVSIGLLNQLLHFLGKSGKIETMMKLFYKIV 751

Query: 425 LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484
            S   + + Y+Y+ +L    + GN    IE+ + M E G+  +V G    I    + R  
Sbjct: 752 ASG-AEINFYTYSILLKNLLAAGNWRKYIEVLQWMEEAGLQPSV-GMYRSISSFAQNRSG 809

Query: 485 DDLVRVFGVSID------RGVKPDDRLCGCLLSVVSLCETSE 520
            +   V    I+      R   P  +L   LL   SL + ++
Sbjct: 810 AEYAAVIQERIESLKRNSRNQNPTKKLNDSLLPASSLLDGTK 851



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 88/173 (50%), Gaps = 13/173 (7%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           W+K+   F  +++ ++ P ++I  +  M++   G Q   +  LA  M   +I  +N ++ 
Sbjct: 635 WEKASALFLEMETDDVQP-DSIACSSLMRAFNKGGQPAKVLVLAEFMREKKIPFNNSSFF 693

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAI------LDVYAKSGKVEEVLSLY 280
            +++    C+L  E   W E +    LM   ++  +I      L    KSGK+E ++ L+
Sbjct: 694 EMVSA---CSLLRE---WREIIGLIKLMEPSISVVSIGLLNQLLHFLGKSGKIETMMKLF 747

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTL 333
            + VASG + +   +S+L K    +G++     VLQ M+  G+QP++ +Y ++
Sbjct: 748 YKIVASGAEINFYTYSILLKNLLAAGNWRKYIEVLQWMEEAGLQPSVGMYRSI 800


>gi|242092708|ref|XP_002436844.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
 gi|241915067|gb|EER88211.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
          Length = 755

 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 152/319 (47%), Gaps = 1/319 (0%)

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           P + + YN  +       Q +    L  EM+   I  + +TY+T+I    +  + D A  
Sbjct: 158 PPDVVAYNTVINGFFREGQVEKAYNLFLEMMDQGIPPNVVTYTTVIDGLCKAQVVDRAKG 217

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
            F++M   G+ PD  TY+ ++  Y  +GK +EV+ + E     G +PD I +++L     
Sbjct: 218 VFQQMIDRGVKPDNGTYNCLIHGYLSTGKWKEVVQMLEEMSTHGLEPDCITYALLLDYLC 277

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
           ++G     R     M   G++P++ +Y  LL      G      S  D MV +G++P+ +
Sbjct: 278 KNGRCREARLFFDSMFRKGIKPDVAIYAILLHGYATKGALSEMHSFLDLMVGNGVSPNRR 337

Query: 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
               +   Y K    ++A+ ++ +MR+     D + +  L++    +G V++A   F  M
Sbjct: 338 IFNIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDVVSFGALIDALCKLGRVDDAVLQFNQM 397

Query: 424 KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483
            +++   P+ + +++++    + G  + A ELF E+ + G+ ++ +    L+  L    R
Sbjct: 398 -INEGVTPNIFVFSSLVYGLCTVGKWEKAEELFFEVLDQGICVDAVFFNTLMCNLCNEGR 456

Query: 484 IDDLVRVFGVSIDRGVKPD 502
           + +  R+  + I  GV+P+
Sbjct: 457 VMEAQRLIDLMIRVGVRPN 475



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 90/370 (24%), Positives = 160/370 (43%), Gaps = 37/370 (10%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           +++  FF+ +  + + P +   Y + +           +    + MV N +  +   ++ 
Sbjct: 283 REARLFFDSMFRKGIKP-DVAIYAILLHGYATKGALSEMHSFLDLMVGNGVSPNRRIFNI 341

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           +     +  + +EA+  F +M + GL PD V++ A++D   K G+V++ +  + + +  G
Sbjct: 342 MFCAYAKKAMIEEAMHIFNKMRQQGLSPDVVSFGALIDALCKLGRVDDAVLQFNQMINEG 401

Query: 288 WKPDPIAFSVL-------GK------MFGESGD----YDGIRY----------------- 313
             P+   FS L       GK      +F E  D     D + +                 
Sbjct: 402 VTPNIFVFSSLVYGLCTVGKWEKAEELFFEVLDQGICVDAVFFNTLMCNLCNEGRVMEAQ 461

Query: 314 -VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIY 372
            ++  M  +GV+PN++ YNTL+      G+   A  L D MV +GL P+E T T L++ Y
Sbjct: 462 RLIDLMIRVGVRPNVISYNTLVAGHCLTGRIDEAAKLLDVMVSNGLKPNEFTYTILLRGY 521

Query: 373 GKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPD 432
            KAR   DA  L+  M           YNT+L+     G   EA  L+ +M ++   K D
Sbjct: 522 CKARRVDDAYSLFREMLMKGVTPVVATYNTILHGLFQTGRFSEANELYLNM-INSRTKCD 580

Query: 433 NYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFG 492
            Y+Y  +LN       VD A ++F  +      ++ +    +I  L K  R +D + +F 
Sbjct: 581 IYTYNIILNGLCKNNFVDEAFKMFRRLCSKDPQLDSVTFNIMIGALLKGGRKEDAMDLFA 640

Query: 493 VSIDRGVKPD 502
                G+ PD
Sbjct: 641 TISAYGLVPD 650



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 88/339 (25%), Positives = 144/339 (42%), Gaps = 40/339 (11%)

Query: 201 RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTY 260
           R   L  ++A E  S+++  +  TYS +I C  R    +     F  + KTG   + +  
Sbjct: 70  RVVSLFTRMARE-CSSKVAPNACTYSILIGCFCRMGRLEHGFAAFGLILKTGWRVNVIVI 128

Query: 261 SAILDVYAKSGKVEEVLS-LYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMK 319
           S +L     + +V+E    L  R    G  PD +A++ +   F   G  +    +  EM 
Sbjct: 129 SQLLKGLCDAKRVDEATDILLLRMSEFGCPPDVVAYNTVINGFFREGQVEKAYNLFLEMM 188

Query: 320 SLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIY-GKARWA 378
             G+ PN+V Y T+++ + KA     A+ +F +M++ G+ PD  T   LI  Y    +W 
Sbjct: 189 DQGIPPNVVTYTTVIDGLCKAQVVDRAKGVFQQMIDRGVKPDNGTYNCLIHGYLSTGKW- 247

Query: 379 KDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTA 438
           K+ +++ E M  +    D I Y  LL+     G   EA RLF D       KPD   Y  
Sbjct: 248 KEVVQMLEEMSTHGLEPDCITYALLLDYLCKNGRCREA-RLFFDSMFRKGIKPDVAIYAI 306

Query: 439 MLNIYGSGGN-----------------------------------VDNAIELFEEMSELG 463
           +L+ Y + G                                    ++ A+ +F +M + G
Sbjct: 307 LLHGYATKGALSEMHSFLDLMVGNGVSPNRRIFNIMFCAYAKKAMIEEAMHIFNKMRQQG 366

Query: 464 VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           ++ +V+    LI  L K  R+DD V  F   I+ GV P+
Sbjct: 367 LSPDVVSFGALIDALCKLGRVDDAVLQFNQMINEGVTPN 405



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/302 (22%), Positives = 125/302 (41%), Gaps = 39/302 (12%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           W+K+   F  +  Q +  ++ +F+N  M +L    +    ++L + M+   +  + I+Y+
Sbjct: 422 WEKAEELFFEVLDQGI-CVDAVFFNTLMCNLCNEGRVMEAQRLIDLMIRVGVRPNVISYN 480

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++         DEA +  + M   GL P+E TY+ +L  Y K+ +V++  SL+      
Sbjct: 481 TLVAGHCLTGRIDEAAKLLDVMVSNGLKPNEFTYTILLRGYCKARRVDDAYSLF------ 534

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
                                        +EM   GV P +  YNT+L  + + G+   A
Sbjct: 535 -----------------------------REMLMKGVTPVVATYNTILHGLFQTGRFSEA 565

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
             L+  M+ S    D  T   ++    K  +  +A +++ R+      +D + +N ++  
Sbjct: 566 NELYLNMINSRTKCDIYTYNIILNGLCKNNFVDEAFKMFRRLCSKDPQLDSVTFNIMIGA 625

Query: 407 CADIGLVEEAERLFEDMKLSDY-CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
               G  E+A  LF    +S Y   PD  +Y  +       G++     LF  M + G A
Sbjct: 626 LLKGGRKEDAMDLFA--TISAYGLVPDVVTYRLIAENLIEEGSLGEFDGLFSAMEKSGTA 683

Query: 466 IN 467
            N
Sbjct: 684 PN 685



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 89/203 (43%), Gaps = 6/203 (2%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN  +  L    +F    +L   M+++  + D  TY+ I+    + N  DEA + F R+ 
Sbjct: 549 YNTILHGLFQTGRFSEANELYLNMINSRTKCDIYTYNIILNGLCKNNFVDEAFKMFRRLC 608

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF---GESG 306
                 D VT++ ++    K G+ E+ + L+    A G  PD + + ++ +     G  G
Sbjct: 609 SKDPQLDSVTFNIMIGALLKGGRKEDAMDLFATISAYGLVPDVVTYRLIAENLIEEGSLG 668

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
           ++DG+      M+  G  PN  + N L+  +   G    A     ++ E   + +  T +
Sbjct: 669 EFDGL---FSAMEKSGTAPNSHMLNALVRRLLHRGDISRAGVYLYKLDEKNFSLEASTTS 725

Query: 367 ALIKIYGKARWAKDALELWERMR 389
            LI +Y +  +   A  L E+ R
Sbjct: 726 MLISLYSRGEYQPHAKSLPEKYR 748


>gi|357167657|ref|XP_003581270.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Brachypodium distachyon]
          Length = 560

 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 156/326 (47%), Gaps = 6/326 (1%)

Query: 172 FFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITC 231
            F  WI+     P +   +NV +K +      Q   +L   M       D +T + ++  
Sbjct: 214 LFEGWIQGGAYSP-DVWSFNVAIKGVCQVGDVQKALELVERMAEFGCSPDTVTNNILVGG 272

Query: 232 AKRCNLFDEAIEWFERMYKTGL-MPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
             R        E   R+ + G+ MP+ VTY++++  Y KSG++E+ +++Y   +  G  P
Sbjct: 273 LCRVKEVSRGREVLRRLQRDGVCMPNVVTYTSVISGYCKSGRMEDAMAVYNDMIGCGTTP 332

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
           + + ++VL   +G++G+      V Q+M      P++V ++TL++   + G+   A   +
Sbjct: 333 NAVTYNVLINGYGKAGNMGSAVAVYQQMILRRCPPDVVTFSTLIDGYCRCGQLDDAMRTW 392

Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER--MRENKWPMDFILYNTLLNMCA 408
            EM +  + P+  T + +I  + K   + +AL   +   MR +  P  FI  N ++++  
Sbjct: 393 TEMSQYQIQPNAHTFSIIILSFCKQNRSAEALRFLKELNMRTDIAPRAFIC-NPVIDVLC 451

Query: 409 DIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINV 468
             G V+EA  +  +M+    C+PD Y+YT ++  +   G +  AI  F +M + G + + 
Sbjct: 452 KGGKVDEANLILMEME-GKGCRPDKYTYTILIIGHCMKGRISEAITFFNKMVDTGCSPDS 510

Query: 469 MGCTCLIQCLGKARRIDDLVRVFGVS 494
           +     I CL KA    ++ R+  ++
Sbjct: 511 ITVNSFIGCLLKAGMPSEVDRIMKIA 536



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/286 (21%), Positives = 129/286 (45%), Gaps = 6/286 (2%)

Query: 208 QLANEMVSNEIELDNITYSTII--TCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
           +L ++M        N  + + +  +CA      D A     +  + G   +   Y+ +++
Sbjct: 142 KLFDQMTDQSGHFPNARFLSFLAGSCANA-GFLDAAAALLSKAPQFGCCVEAYAYNKLMN 200

Query: 266 VYAKSGKVEEVLSLYERGVASG-WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQ 324
            +   G+V++ ++L+E  +  G + PD  +F+V  K   + GD      +++ M   G  
Sbjct: 201 SFIGCGRVQDAVALFEGWIQGGAYSPDVWSFNVAIKGVCQVGDVQKALELVERMAEFGCS 260

Query: 325 PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT-PDEKTLTALIKIYGKARWAKDALE 383
           P+ V  N L+  + +  +    R +   +   G+  P+  T T++I  Y K+   +DA+ 
Sbjct: 261 PDTVTNNILVGGLCRVKEVSRGREVLRRLQRDGVCMPNVVTYTSVISGYCKSGRMEDAMA 320

Query: 384 LWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIY 443
           ++  M       + + YN L+N     G +  A  +++ M L   C PD  +++ +++ Y
Sbjct: 321 VYNDMIGCGTTPNAVTYNVLINGYGKAGNMGSAVAVYQQMILRR-CPPDVVTFSTLIDGY 379

Query: 444 GSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
              G +D+A+  + EMS+  +  N    + +I    K  R  + +R
Sbjct: 380 CRCGQLDDAMRTWTEMSQYQIQPNAHTFSIIILSFCKQNRSAEALR 425



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 80/355 (22%), Positives = 147/355 (41%), Gaps = 9/355 (2%)

Query: 242 IEWFERMYKTGLM--PDEVTYSAILDVYAKSGKVEEVLSLYERGV-ASGWKPDPIAFSVL 298
           ++ F  ++ + L   P   +Y  ++ +  +S +  + L L+++    SG  P+    S L
Sbjct: 104 LQLFSALHSSQLAIPPSAHSYRYVISMLCQSSRHTDALKLFDQMTDQSGHFPNARFLSFL 163

Query: 299 GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG- 357
                 +G  D    +L +    G       YN L+ +    G+   A +LF+  ++ G 
Sbjct: 164 AGSCANAGFLDAAAALLSKAPQFGCCVEAYAYNKLMNSFIGCGRVQDAVALFEGWIQGGA 223

Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417
            +PD  +    IK   +    + ALEL ERM E     D +  N L+     +  V    
Sbjct: 224 YSPDVWSFNVAIKGVCQVGDVQKALELVERMAEFGCSPDTVTNNILVGGLCRVKEVSRGR 283

Query: 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
            +   ++    C P+  +YT++++ Y   G +++A+ ++ +M   G   N +    LI  
Sbjct: 284 EVLRRLQRDGVCMPNVVTYTSVISGYCKSGRMEDAMAVYNDMIGCGTTPNAVTYNVLING 343

Query: 478 LGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLV 537
            GKA  +   V V+   I R   PD      L+     C   +D  +  T + Q   +  
Sbjct: 344 YGKAGNMGSAVAVYQQMILRRCPPDVVTFSTLIDGYCRCGQLDDAMRTWTEMSQYQIQPN 403

Query: 538 AFLNLIEDNSTGFENIKEEFRNVIKD----TEVDARRPFCNCLIDI-CRNRNLNE 587
           A    I   S   +N   E    +K+    T++  R   CN +ID+ C+   ++E
Sbjct: 404 AHTFSIIILSFCKQNRSAEALRFLKELNMRTDIAPRAFICNPVIDVLCKGGKVDE 458


>gi|297734265|emb|CBI15512.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 163/357 (45%), Gaps = 24/357 (6%)

Query: 148 IPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIE 207
           +PH   +E + ++L        +  FFNW+K+       T  Y + + +L + R F    
Sbjct: 95  LPHLGAQEISRVLLRCQSDSFTALSFFNWVKNDLGLRPSTQNYCIVVHTLAWSRNFSQAM 154

Query: 208 QLANEMVSNEIELDNI----TYSTIITCAKRCN----LFD-------------EAIEWFE 246
           +   E+V  E+  D++     +  +I C + CN    +FD             E +  F 
Sbjct: 155 KFLCELV--ELVKDDLPSEDVFKNLILCTEDCNWDPVVFDMLVKAYLRMGRVREGLRSFR 212

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
           RM + G +P  +T + +L+   K    +    +YE     G  P+   F++L  +  + G
Sbjct: 213 RMLRVGFVPTVITSNYLLNGLLKLNYTDRCWEVYEEMERFGIAPNLYTFNILTHVLCKDG 272

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
           D   +   L++M+  G  P++V YNTL+ +  + G+   A  L+  M   G+ PD  + T
Sbjct: 273 DTGKVNKFLEKMEEEGFDPDIVTYNTLINSYCRKGRLDDAFYLYKIMYRRGVVPDLVSYT 332

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
           AL+    K    ++A +L+ RM       D + YNTL++     G ++E+  L  DM + 
Sbjct: 333 ALMNGLCKEGRVREAHQLFHRMVHRGLSPDIVTYNTLIHGYCKEGKMQESRSLLHDM-IW 391

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483
           +   PD+++   ++  YG  G   +A+ L  E+   GV+I+    + LI  L +  R
Sbjct: 392 NGISPDSFTCWVLVEGYGKEGKFLSALNLVVELQRFGVSISQDIYSYLIVALCRENR 448



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 126/273 (46%), Gaps = 11/273 (4%)

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
           ++ E+M + G  PD VTY+ +++ Y + G++++   LY+     G  PD ++++ L    
Sbjct: 279 KFLEKMEEEGFDPDIVTYNTLINSYCRKGRLDDAFYLYKIMYRRGVVPDLVSYTALMNGL 338

Query: 303 GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
            + G       +   M   G+ P++V YNTL+    K GK   +RSL  +M+ +G++PD 
Sbjct: 339 CKEGRVREAHQLFHRMVHRGLSPDIVTYNTLIHGYCKEGKMQESRSLLHDMIWNGISPDS 398

Query: 363 KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEE-----AE 417
            T   L++ YGK      AL L   ++     +   +Y+ L+     + L  E     A+
Sbjct: 399 FTCWVLVEGYGKEGKFLSALNLVVELQRFGVSISQDIYSYLI-----VALCRENRPFAAK 453

Query: 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
            L E M   D  KP+   Y  ++  +     +  A+ L  EM +  +  N+     +I C
Sbjct: 454 NLLERMS-KDGHKPELEIYNELIKSFCQCDCIAEALLLKMEMVDKEIKPNLATYRAVIGC 512

Query: 478 LGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
           L +  R  +   + G  +  G+ PD  +C  L 
Sbjct: 513 LSRLSRSMEGESLVGEMVASGMLPDLEICRALF 545



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 132/299 (44%), Gaps = 7/299 (2%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           I  +V  K    G+  + +E++  E    +I    +TY+T+I    R    D+A   ++ 
Sbjct: 263 ILTHVLCKDGDTGKVNKFLEKMEEEGFDPDI----VTYNTLINSYCRKGRLDDAFYLYKI 318

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           MY+ G++PD V+Y+A+++   K G+V E   L+ R V  G  PD + ++ L   + + G 
Sbjct: 319 MYRRGVVPDLVSYTALMNGLCKEGRVREAHQLFHRMVHRGLSPDIVTYNTLIHGYCKEGK 378

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
               R +L +M   G+ P+      L+E  GK GK   A +L  E+   G++  +   + 
Sbjct: 379 MQESRSLLHDMIWNGISPDSFTCWVLVEGYGKEGKFLSALNLVVELQRFGVSISQDIYSY 438

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           LI    +      A  L ERM ++    +  +YN L+        + EA  L   M++ D
Sbjct: 439 LIVALCRENRPFAAKNLLERMSKDGHKPELEIYNELIKSFCQCDCIAEA--LLLKMEMVD 496

Query: 428 Y-CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
              KP+  +Y A++              L  EM   G+  ++  C  L     +   ID
Sbjct: 497 KEIKPNLATYRAVIGCLSRLSRSMEGESLVGEMVASGMLPDLEICRALFYGYCRENDID 555



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 78/175 (44%), Gaps = 1/175 (0%)

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
           VV++ L++A  + G+       F  M+  G  P   T   L+    K  +     E++E 
Sbjct: 189 VVFDMLVKAYLRMGRVREGLRSFRRMLRVGFVPTVITSNYLLNGLLKLNYTDRCWEVYEE 248

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           M       +   +N L ++    G   +  +  E M+   +  PD  +Y  ++N Y   G
Sbjct: 249 MERFGIAPNLYTFNILTHVLCKDGDTGKVNKFLEKMEEEGF-DPDIVTYNTLINSYCRKG 307

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            +D+A  L++ M   GV  +++  T L+  L K  R+ +  ++F   + RG+ PD
Sbjct: 308 RLDDAFYLYKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQLFHRMVHRGLSPD 362



 Score = 43.5 bits (101), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 70/170 (41%), Gaps = 4/170 (2%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  EMV  EI+ +  TY  +I C  R +   E       M  +G++PD     A+   Y 
Sbjct: 490 LKMEMVDKEIKPNLATYRAVIGCLSRLSRSMEGESLVGEMVASGMLPDLEICRALFYGYC 549

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           +   +++  SL           D  +F+ L ++    GD      +   M  +G+ PN +
Sbjct: 550 RENDIDKAESLLSFFAKEFQIHDTESFNALIRITSAKGDIARSLEIQDMMLKMGLLPNPL 609

Query: 329 VYN--TLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL--TALIKIYGK 374
             N   +L +  +        ++FD M  S L  D ++L   AL  + GK
Sbjct: 610 TCNPFAILTSRLRVDVKAANMAIFDGMNASSLWGDNESLEENALQVLLGK 659


>gi|410110107|gb|AFV61133.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           brasiliensis]
          Length = 382

 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 83/366 (22%), Positives = 171/366 (46%), Gaps = 6/366 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K     P + + YN  +      + F+    L +EM +  +  +  +YS
Sbjct: 21  YSKAISIFSRLKRSGFTP-DLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYS 79

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY + G  +E   L+      
Sbjct: 80  TLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 139

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   ++ N+V YN+++   GK  +   A
Sbjct: 140 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKA 199

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R +   +D IL+ T++  
Sbjct: 200 NNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVA 259

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K     +PDN      ++I    G ++ A  +F +  + G   
Sbjct: 260 YERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVK 314

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           ++     +I  L K ++  ++V VF      G  PD  +   +L+     +  +    V 
Sbjct: 315 DITVFERMIHLLSKYKKYXNVVEVFDKMRGLGYFPDSNVIAVVLNAYGKLQEFDKANDVY 374

Query: 527 TCLQQA 532
             +Q+ 
Sbjct: 375 MEMQEV 380



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 134/261 (51%), Gaps = 1/261 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D + YS +I  +++   + +AI  F R+ ++G  PD V Y+A+++V+ K+    E  SL 
Sbjct: 4   DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLI 63

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
                +G  P+  ++S L  M+ E+  +     V  EM+ +    +L   N +++  G+ 
Sbjct: 64  SEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQL 123

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G    A  LF  M + G+ P+  +   L+++YG A    +A+ L+  M+      + + Y
Sbjct: 124 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 183

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           N+++ +       E+A  L ++M+ S   +P++ +Y+ +++I+G  G +D A  LF+++ 
Sbjct: 184 NSMIMIYGKTLEHEKANNLIQEMQ-SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLR 242

Query: 461 ELGVAINVMGCTCLIQCLGKA 481
             GV I+ +    +I    +A
Sbjct: 243 SSGVEIDQILFQTMIVAYERA 263



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 75/180 (41%), Gaps = 31/180 (17%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY- 267
           L  EM S  IE ++ITYSTII+   +    D A   F+++  +G+  D++ +  ++  Y 
Sbjct: 202 LIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYE 261

Query: 268 ------------------------------AKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
                                         A +G++EE   ++ + + +G   D   F  
Sbjct: 262 RAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFER 321

Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
           +  +  +   Y  +  V  +M+ LG  P+  V   +L A GK  +   A  ++ EM E G
Sbjct: 322 MIHLLSKYKKYXNVVEVFDKMRGLGYFPDSNVIAVVLNAYGKLQEFDKANDVYMEMQEVG 381



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 69/153 (45%), Gaps = 1/153 (0%)

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
           A+ ++ R++ + +  D + YN ++N+     L  EA  L  +MK +    P+  SY+ +L
Sbjct: 24  AISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAG-VMPNTTSYSTLL 82

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
            +Y        A+ +F EM E+   +++  C  +I   G+     +  ++F      G++
Sbjct: 83  TMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 142

Query: 501 PDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN 533
           P+      LL V    E   +   +   +Q+ N
Sbjct: 143 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKN 175


>gi|255583688|ref|XP_002532598.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527686|gb|EEF29795.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 553

 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 101/409 (24%), Positives = 171/409 (41%), Gaps = 46/409 (11%)

Query: 158 LLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQ--FQLIEQLANEMVS 215
           L+    LK W        W+++Q+ +    +  +  M    +G+Q  F   E++ + M  
Sbjct: 111 LVRFKQLKKWHLVSQILEWVRTQSWWDFNEM--DSLMLITAYGKQGNFSAAEKVLSYMNK 168

Query: 216 NEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEE 275
                + ++++ ++    R   ++ A   F RM  +G  P  VTY  IL  + +  K +E
Sbjct: 169 MGYVPNVVSHTALMEAYGRGARYNNAEAIFRRMQSSGPKPSAVTYQIILKNFVEGNKFKE 228

Query: 276 VLSLYERGV---ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNT 332
              ++E  +    S  KPD   F ++  M  ++G+Y+  R +   M   GV  + V YN+
Sbjct: 229 AEEVFETLLDEEKSPLKPDQKMFHMMIYMHRKAGNYEKARQIFALMTQRGVPKSTVTYNS 288

Query: 333 LLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENK 392
           L+       +      ++D+M  SGL PD  +   LI  YGKAR   +AL ++E M +  
Sbjct: 289 LMSFETNYKE---VSKIYDQMQRSGLQPDVISYALLINAYGKARREDEALAVFEEMLDAG 345

Query: 393 WPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIY--------- 443
                  YN LL+  A  G+VE+A  +F+ M+   Y  PD  SYT ML+ Y         
Sbjct: 346 VRPTHKAYNILLDAFAISGMVEQARTVFKSMRRDRYT-PDLCSYTTMLSAYVNASDMAGA 404

Query: 444 --------------------------GSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
                                         N+D  +E +EEM   GV  N    T ++  
Sbjct: 405 ENFFNRLKQDGLEPNVVTYGALIKGYAKTNNLDKMMEKYEEMQLRGVKANQTIFTTIMDA 464

Query: 478 LGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
            GK +     V  +      GV PD +    LLS+    +  ++  +++
Sbjct: 465 YGKNKDFGSAVIWYKEMEQYGVPPDQKAKNILLSLAKTADEQKEANQMV 513



 Score = 89.4 bits (220), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 123/263 (46%), Gaps = 9/263 (3%)

Query: 286 SGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGL 345
           S W  + +   +L   +G+ G++     VL  M  +G  PN+V +  L+EA G+  +   
Sbjct: 134 SWWDFNEMDSLMLITAYGKQGNFSAAEKVLSYMNKMGYVPNVVSHTALMEAYGRGARYNN 193

Query: 346 ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER-MRENKWPM--DFILYNT 402
           A ++F  M  SG  P   T   ++K + +    K+A E++E  + E K P+  D  +++ 
Sbjct: 194 AEAIFRRMQSSGPKPSAVTYQIILKNFVEGNKFKEAEEVFETLLDEEKSPLKPDQKMFHM 253

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
           ++ M    G  E+A ++F  M      K    +Y ++++      N     +++++M   
Sbjct: 254 MIYMHRKAGNYEKARQIFALMTQRGVPK-STVTYNSLMSF---ETNYKEVSKIYDQMQRS 309

Query: 463 GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDV 522
           G+  +V+    LI   GKARR D+ + VF   +D GV+P  +    LL   ++    E  
Sbjct: 310 GLQPDVISYALLINAYGKARREDEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQA 369

Query: 523 GKVITCLQ--QANPKLVAFLNLI 543
             V   ++  +  P L ++  ++
Sbjct: 370 RTVFKSMRRDRYTPDLCSYTTML 392


>gi|145336957|ref|NP_176459.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206054|sp|Q9SI78.1|PPR93_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62720
 gi|6630449|gb|AAF19537.1|AC007190_5 F23N19.8 [Arabidopsis thaliana]
 gi|62320514|dbj|BAD95075.1| PPR-repeat protein [Arabidopsis thaliana]
 gi|332195876|gb|AEE33997.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 485

 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 164/342 (47%), Gaps = 19/342 (5%)

Query: 165 KFWQKSY--------------FFFNWIKSQNLFPMETIF-YNVTMKSLRFGRQFQLIEQL 209
           +FW +++               F   I+S+   P+ +I  ++  +  +   + + L+  L
Sbjct: 35  RFWGRTFSTKRSSMNLEEEIDLFCKMIQSR---PLPSIVDFSKVLSKIAKSKNYDLVISL 91

Query: 210 ANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAK 269
            + M    I  D  +Y+ +I C  RC+ F  A+    +M K G  PD VT S++++ + +
Sbjct: 92  FHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQ 151

Query: 270 SGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVV 329
             +V + + L  +    G++PD + ++ +     + G  +    +   M+  GV+ + V 
Sbjct: 152 GNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVT 211

Query: 330 YNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMR 389
           YN+L+  +  +G+   A  L  +MV   + P+  T TA+I ++ K     +A++L+E M 
Sbjct: 212 YNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMT 271

Query: 390 ENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNV 449
                 D   YN+L+N     G V+EA+++  D+ ++  C PD  +Y  ++N +     V
Sbjct: 272 RRCVDPDVFTYNSLINGLCMHGRVDEAKQML-DLMVTKGCLPDVVTYNTLINGFCKSKRV 330

Query: 450 DNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           D   +LF EM++ G+  + +    +IQ   +A R D    +F
Sbjct: 331 DEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIF 372



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 152/318 (47%), Gaps = 14/318 (4%)

Query: 192 VTMKSLRFG-----RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
           VT+ SL  G     R F  I+ L ++M       D + Y+TII  + +  L ++A+E F+
Sbjct: 140 VTVSSLINGFCQGNRVFDAID-LVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFD 198

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
           RM + G+  D VTY++++     SG+  +   L    V     P+ I F+ +  +F + G
Sbjct: 199 RMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEG 258

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
            +     + +EM    V P++  YN+L+  +   G+   A+ + D MV  G  PD  T  
Sbjct: 259 KFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYN 318

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
            LI  + K++   +  +L+  M +     D I YNT++      G  + A+ +F  M   
Sbjct: 319 TLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMD-- 376

Query: 427 DYCKPDNYSYTAMLNIYGSGGN--VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484
              +P+  +Y+ +L  YG   N  V+ A+ LFE M +  + +++     +I  + K   +
Sbjct: 377 --SRPNIRTYSILL--YGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNV 432

Query: 485 DDLVRVFGVSIDRGVKPD 502
           +D   +F     +G+KPD
Sbjct: 433 EDAWDLFRSLSCKGLKPD 450



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 148/309 (47%), Gaps = 16/309 (5%)

Query: 183 FPMETIFYNVTMK-SLRFGRQFQLIEQLANEMVSNEIELDNITYSTIIT---CAKRCNLF 238
           F  + + YN  +  S + G     +E L + M  + +  D +TY++++    C+ R   +
Sbjct: 170 FRPDVVIYNTIIDGSCKIGLVNDAVE-LFDRMERDGVRADAVTYNSLVAGLCCSGR---W 225

Query: 239 DEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
            +A      M    ++P+ +T++A++DV+ K GK  E + LYE        PD   ++ L
Sbjct: 226 SDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSL 285

Query: 299 GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
                  G  D  + +L  M + G  P++V YNTL+    K+ +      LF EM + GL
Sbjct: 286 INGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGL 345

Query: 359 TPDEKTLTALIKIYGKARWAKDALELWERM--RENKWPMDFILYNTLLNMCADIGLVEEA 416
             D  T   +I+ Y +A     A E++ RM  R N      +LY   +N       VE+A
Sbjct: 346 VGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSRPNIRTYSILLYGLCMNW-----RVEKA 400

Query: 417 ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
             LFE+M+ S+  + D  +Y  +++     GNV++A +LF  +S  G+  +V+  T +I 
Sbjct: 401 LVLFENMQKSEI-ELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMIS 459

Query: 477 CLGKARRID 485
              + R+ D
Sbjct: 460 GFCRKRQWD 468



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 141/281 (50%), Gaps = 8/281 (2%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + YN  +  L    ++    +L  +MV  +I  + IT++ +I    +   F EA++ +
Sbjct: 208 DAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLY 267

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           E M +  + PD  TY+++++     G+V+E   + +  V  G  PD + ++ L   F +S
Sbjct: 268 EEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKS 327

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
              D    + +EM   G+  + + YNT+++   +AG+P  A+ +F  M      P+ +T 
Sbjct: 328 KRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSR---PNIRTY 384

Query: 366 TALIKIYGKA-RW-AKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
           + L  +YG    W  + AL L+E M++++  +D   YN +++    IG VE+A  LF  +
Sbjct: 385 SIL--LYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSL 442

Query: 424 KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
                 KPD  SYT M++ +      D +  L+ +M E G+
Sbjct: 443 SCKGL-KPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDGL 482



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 115/233 (49%), Gaps = 1/233 (0%)

Query: 270 SGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVV 329
           S  +EE + L+ + + S   P  + FS +     +S +YD +  +   M+  G+  +L  
Sbjct: 47  SMNLEEEIDLFCKMIQSRPLPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYS 106

Query: 330 YNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMR 389
           YN ++  + +  +  +A S+  +M++ G  PD  T+++LI  + +     DA++L  +M 
Sbjct: 107 YNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKME 166

Query: 390 ENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNV 449
           E  +  D ++YNT+++    IGLV +A  LF+ M+  D  + D  +Y +++      G  
Sbjct: 167 EMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRME-RDGVRADAVTYNSLVAGLCCSGRW 225

Query: 450 DNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            +A  L  +M    +  NV+  T +I    K  +  + ++++     R V PD
Sbjct: 226 SDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPD 278



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/203 (20%), Positives = 85/203 (41%), Gaps = 32/203 (15%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN  +  L    +    +Q+ + MV+     D +TY+T+I    +    DE  + F  M 
Sbjct: 282 YNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMA 341

Query: 250 KTGLMPDEVTYSAILDVYAKSGK--------------------------------VEEVL 277
           + GL+ D +TY+ I+  Y ++G+                                VE+ L
Sbjct: 342 QRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSRPNIRTYSILLYGLCMNWRVEKAL 401

Query: 278 SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
            L+E    S  + D   ++++     + G+ +    + + +   G++P++V Y T++   
Sbjct: 402 VLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGF 461

Query: 338 GKAGKPGLARSLFDEMVESGLTP 360
            +  +   +  L+ +M E GL P
Sbjct: 462 CRKRQWDKSDLLYRKMQEDGLLP 484


>gi|358346363|ref|XP_003637238.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503173|gb|AES84376.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 663

 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 86/323 (26%), Positives = 146/323 (45%), Gaps = 24/323 (7%)

Query: 180 QNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFD 239
           +N+ P  TI Y + +       +  + +    EM S  +E  N+ +  ++   KR    D
Sbjct: 179 RNVMP-NTIVYAILIDGYFKAGEQDVADDFCKEMKSRRLEESNVIFDILLNNLKRVGRMD 237

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           EA      MY  G+ PD V Y++++D Y K G     LS+ +       + D +A++ L 
Sbjct: 238 EARSLIIDMYSKGIDPDIVNYASLIDGYFKEGNQLAALSIVQEMKEKNIRFDVVAYNALI 297

Query: 300 KMFGESGDYDGIRYV---------------------LQEMKSLGVQPNLVVYNTLLEAMG 338
           K     G YD  RYV                     L EMKS G+ PN V YN L+  + 
Sbjct: 298 KGLLRLGKYDP-RYVCSRMIELGLAPDCKTEDALDILNEMKSYGIMPNAVTYNILIGGLC 356

Query: 339 KAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFI 398
           K G    A S  DEM+     P   T   L+K Y ++  A   L++ E++  +   +   
Sbjct: 357 KTGAVEKAESALDEMLVMEFVPTPITHKFLVKAYSRSEKADKILQIHEKLVASGLELSLT 416

Query: 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458
           +YNTL+ +   +G+  +A+ + ++M +      D  +Y A++  Y +G +V+ A++ + +
Sbjct: 417 VYNTLITVFCRLGMTRKAKVVLDEM-VKRGISADLVTYNALIRGYCTGSHVEKALKTYSQ 475

Query: 459 MSELGVAINVMGCTCLIQCLGKA 481
           M   G+A N+     L+  L  A
Sbjct: 476 MFVDGIAPNITTYNTLLGGLSNA 498



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 148/315 (46%), Gaps = 6/315 (1%)

Query: 192 VTMKSLRFG--RQFQLIEQ--LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           VT  S+ +G  R  +L E   L  EM    ++ ++++Y+TII    +     EA     +
Sbjct: 11  VTCSSILYGFCRHGKLTEAAVLFREMYEMGLDPNHVSYATIINSLFKSGRVMEAFNLQSQ 70

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M   G+  D VT + ++D   K GK +E   ++E  +     P+ + +S L   + + G 
Sbjct: 71  MVVRGISFDIVTCTTVMDGLFKVGKTKEAEEVFETILKLNLAPNCVTYSALLDGYCKLGK 130

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
            +    VLQ+M+   V PN++ +++++    K G    A  +  EMV+  + P+      
Sbjct: 131 MELAELVLQKMEKEHVPPNVITFSSIINGYAKKGMLSKAVDVLREMVQRNVMPNTIVYAI 190

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           LI  Y KA     A +  + M+  +     ++++ LLN    +G ++EA  L  DM  S 
Sbjct: 191 LIDGYFKAGEQDVADDFCKEMKSRRLEESNVIFDILLNNLKRVGRMDEARSLIIDM-YSK 249

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
              PD  +Y ++++ Y   GN   A+ + +EM E  +  +V+    LI+ L +  + D  
Sbjct: 250 GIDPDIVNYASLIDGYFKEGNQLAALSIVQEMKEKNIRFDVVAYNALIKGLLRLGKYDPR 309

Query: 488 VRVFGVSIDRGVKPD 502
             V    I+ G+ PD
Sbjct: 310 Y-VCSRMIELGLAPD 323



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 126/279 (45%), Gaps = 25/279 (8%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFD--------------------EAIEWFERM 248
           +  EM    I  D + Y+ +I    R   +D                    +A++    M
Sbjct: 277 IVQEMKEKNIRFDVVAYNALIKGLLRLGKYDPRYVCSRMIELGLAPDCKTEDALDILNEM 336

Query: 249 YKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY 308
              G+MP+ VTY+ ++    K+G VE+  S  +  +   + P PI    L K +  S   
Sbjct: 337 KSYGIMPNAVTYNILIGGLCKTGAVEKAESALDEMLVMEFVPTPITHKFLVKAYSRSEKA 396

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
           D I  + +++ + G++ +L VYNTL+    + G    A+ + DEMV+ G++ D  T  AL
Sbjct: 397 DKILQIHEKLVASGLELSLTVYNTLITVFCRLGMTRKAKVVLDEMVKRGISADLVTYNAL 456

Query: 369 IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL----VEEAERLFEDMK 424
           I+ Y      + AL+ + +M  +    +   YNTLL   ++ GL    +EE E+L  +M 
Sbjct: 457 IRGYCTGSHVEKALKTYSQMFVDGIAPNITTYNTLLGGLSNAGLMEEMMEETEKLVSEMN 516

Query: 425 LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
                 P+  +Y  +++ YG  GN    I L  EM   G
Sbjct: 517 ERGLV-PNAATYDILVSGYGRVGNRKKTIILHIEMITKG 554



 Score = 42.7 bits (99), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 47/213 (22%), Positives = 91/213 (42%), Gaps = 18/213 (8%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI--- 242
           + + YN  ++    G   +   +  ++M  + I  +  TY+T++       L +E +   
Sbjct: 449 DLVTYNALIRGYCTGSHVEKALKTYSQMFVDGIAPNITTYNTLLGGLSNAGLMEEMMEET 508

Query: 243 -EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKM 301
            +    M + GL+P+  TY  ++  Y + G  ++ + L+   +  G+ P    ++VL   
Sbjct: 509 EKLVSEMNERGLVPNAATYDILVSGYGRVGNRKKTIILHIEMITKGFVPTLKTYNVLISD 568

Query: 302 FGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA-MGKAGKPGLARS-----------L 349
           + +SG     R +L ++ + G  PN   Y+ L    +  + +P + RS           L
Sbjct: 569 YAKSGKMIEARELLNDLLTKGRIPNSFTYDILTCGWLNLSYEPEIDRSLKRSYEIEVKKL 628

Query: 350 FDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382
             EM   GL   +K     +KI+    W  DAL
Sbjct: 629 LIEMGRKGLKFSKKAEIRRLKIF--PHWMVDAL 659


>gi|242089061|ref|XP_002440363.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
 gi|241945648|gb|EES18793.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
          Length = 715

 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 143/279 (51%), Gaps = 1/279 (0%)

Query: 213 MVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK 272
           M+ + I L++  ++ +I    +    D+A+  F  M + G  P+ VTY+ ++D+  K+G+
Sbjct: 286 MIQDGIPLEDHVFNILIRAYAKNETLDKAMTAFIEMRQKGFSPNVVTYTTVIDILCKAGR 345

Query: 273 VEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNT 332
           VE+ +S + + V+ G  PD I F+ L       G++  +  +  EM + G+ PN +  NT
Sbjct: 346 VEDAVSHFSQMVSEGLSPDIITFTSLIHGLCTIGEWKKVEKLSFEMINRGIHPNAIFLNT 405

Query: 333 LLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENK 392
           +++++ K G+   A   FD+++  G+ PD  + T LI  Y       ++++L  RM    
Sbjct: 406 IMDSLCKEGRVLEAHDFFDQIIHVGVKPDVVSYTILIDGYCLDGKMDESIKLLGRMVSIG 465

Query: 393 WPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNA 452
              D + Y+ LLN     G V++A  L+ +M  S   KP+  +Y  +L+     G V  A
Sbjct: 466 LRPDNVTYSALLNGYCKNGRVDDALALYREM-FSKDVKPNAITYNIILHGLFHAGRVVAA 524

Query: 453 IELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
            E + ++ + G+ + +     ++  L +   +D+ +R+F
Sbjct: 525 REFYMKIVDSGIQLGINTYNIVLGGLCENSFVDEALRMF 563



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/351 (26%), Positives = 158/351 (45%), Gaps = 20/351 (5%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSL---------------RFGR-QFQLIEQLANE 212
           K+Y  F+ +  Q  FP   + YN  +  L                F + Q +   +L  +
Sbjct: 157 KAYTLFHEMLGQG-FPPNIVTYNSVIDGLCKAQAMDKAEAVLQQMFDKGQLEEAVRLLKK 215

Query: 213 MVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK 272
           M    ++ D +TYS +I    +     EA   F+ M + G  PD  TY  +L  YA  G 
Sbjct: 216 MSGGGLQPDVVTYSLLIDYYCKIGRCTEARNIFDSMVRRGQNPDAYTYRTLLHGYATKGA 275

Query: 273 VEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNT 332
           + ++  L    +  G   +   F++L + + ++   D       EM+  G  PN+V Y T
Sbjct: 276 LVDMHDLLALMIQDGIPLEDHVFNILIRAYAKNETLDKAMTAFIEMRQKGFSPNVVTYTT 335

Query: 333 LLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK-IYGKARWAKDALELWERMREN 391
           +++ + KAG+   A S F +MV  GL+PD  T T+LI  +     W K     +E +   
Sbjct: 336 VIDILCKAGRVEDAVSHFSQMVSEGLSPDIITFTSLIHGLCTIGEWKKVEKLSFEMINRG 395

Query: 392 KWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDN 451
             P + I  NT+++     G V EA   F D  +    KPD  SYT +++ Y   G +D 
Sbjct: 396 IHP-NAIFLNTIMDSLCKEGRVLEAHDFF-DQIIHVGVKPDVVSYTILIDGYCLDGKMDE 453

Query: 452 AIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           +I+L   M  +G+  + +  + L+    K  R+DD + ++     + VKP+
Sbjct: 454 SIKLLGRMVSIGLRPDNVTYSALLNGYCKNGRVDDALALYREMFSKDVKPN 504



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/313 (24%), Positives = 158/313 (50%), Gaps = 5/313 (1%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           F+ + S+ L P + I +   +  L    +++ +E+L+ EM++  I  + I  +TI+    
Sbjct: 353 FSQMVSEGLSP-DIITFTSLIHGLCTIGEWKKVEKLSFEMINRGIHPNAIFLNTIMDSLC 411

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
           +     EA ++F+++   G+ PD V+Y+ ++D Y   GK++E + L  R V+ G +PD +
Sbjct: 412 KEGRVLEAHDFFDQIIHVGVKPDVVSYTILIDGYCLDGKMDESIKLLGRMVSIGLRPDNV 471

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
            +S L   + ++G  D    + +EM S  V+PN + YN +L  +  AG+   AR  + ++
Sbjct: 472 TYSALLNGYCKNGRVDDALALYREMFSKDVKPNAITYNIILHGLFHAGRVVAAREFYMKI 531

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
           V+SG+     T   ++    +  +  +AL +++ +R  ++ ++   +N ++     +G +
Sbjct: 532 VDSGIQLGINTYNIVLGGLCENSFVDEALRMFQGLRSKEFQLEVRTFNIMIVGLLKVGRI 591

Query: 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTC 473
            +A+ LF  + L     PD   Y  M+  +   G ++ + ELF  M + G   N      
Sbjct: 592 GDAKSLFSAI-LPSGLVPDAIIYGLMIQSHIEEGLLEESDELFLSMEKNGCTANSRTLNA 650

Query: 474 LIQCL---GKARR 483
           +++ L   G  RR
Sbjct: 651 IVRKLLEKGDVRR 663



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 78/332 (23%), Positives = 159/332 (47%), Gaps = 37/332 (11%)

Query: 216 NEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLM----------PDEVTYSAILD 265
           N++  D  T+  +I C     L D A+E   R  +  +           P+ ++Y+ +++
Sbjct: 88  NKLATDACTFGILIRCFCNVGLLDFALEEESRGSRAAVHMMADDGYNCPPNVLSYNMVIN 147

Query: 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAF-----------------SVLGKMFGESGDY 308
              K G+V++  +L+   +  G+ P+ + +                 +VL +MF +    
Sbjct: 148 GLFKEGEVDKAYTLFHEMLGQGFPPNIVTYNSVIDGLCKAQAMDKAEAVLQQMFDKGQLE 207

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
           + +R +L++M   G+QP++V Y+ L++   K G+   AR++FD MV  G  PD  T   L
Sbjct: 208 EAVR-LLKKMSGGGLQPDVVTYSLLIDYYCKIGRCTEARNIFDSMVRRGQNPDAYTYRTL 266

Query: 369 IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428
           +  Y       D  +L   M ++  P++  ++N L+   A    +++A   F +M+   +
Sbjct: 267 LHGYATKGALVDMHDLLALMIQDGIPLEDHVFNILIRAYAKNETLDKAMTAFIEMRQKGF 326

Query: 429 CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL---GKARRID 485
             P+  +YT +++I    G V++A+  F +M   G++ +++  T LI  L   G+ ++++
Sbjct: 327 -SPNVVTYTTVIDILCKAGRVEDAVSHFSQMVSEGLSPDIITFTSLIHGLCTIGEWKKVE 385

Query: 486 DLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCE 517
            L       I+RG+ P+      ++   SLC+
Sbjct: 386 KLSFEM---INRGIHPNAIFLNTIMD--SLCK 412



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 121/292 (41%), Gaps = 32/292 (10%)

Query: 241 AIEWFERMYKTG---LMPDEVTYSAILDVYAKSGKVEEVLSLYERG--------VASGWK 289
           A+  F  M + G   L  D  T+  ++  +   G ++  L    RG           G+ 
Sbjct: 75  AVSLFNTMAQVGVNKLATDACTFGILIRCFCNVGLLDFALEEESRGSRAAVHMMADDGYN 134

Query: 290 PDPIAFS---VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA------ 340
             P   S   V+  +F E G+ D    +  EM   G  PN+V YN++++ + KA      
Sbjct: 135 CPPNVLSYNMVINGLFKE-GEVDKAYTLFHEMLGQGFPPNIVTYNSVIDGLCKAQAMDKA 193

Query: 341 ----------GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
                     G+   A  L  +M   GL PD  T + LI  Y K     +A  +++ M  
Sbjct: 194 EAVLQQMFDKGQLEEAVRLLKKMSGGGLQPDVVTYSLLIDYYCKIGRCTEARNIFDSMVR 253

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
                D   Y TLL+  A  G + +   L   M + D    +++ +  ++  Y     +D
Sbjct: 254 RGQNPDAYTYRTLLHGYATKGALVDMHDLLALM-IQDGIPLEDHVFNILIRAYAKNETLD 312

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            A+  F EM + G + NV+  T +I  L KA R++D V  F   +  G+ PD
Sbjct: 313 KAMTAFIEMRQKGFSPNVVTYTTVIDILCKAGRVEDAVSHFSQMVSEGLSPD 364



 Score = 45.8 bits (107), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 41/210 (19%), Positives = 88/210 (41%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
            I YN+ +  L    +     +   ++V + I+L   TY+ ++      +  DEA+  F+
Sbjct: 505 AITYNIILHGLFHAGRVVAAREFYMKIVDSGIQLGINTYNIVLGGLCENSFVDEALRMFQ 564

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
            +       +  T++ ++    K G++ +  SL+   + SG  PD I + ++ +   E G
Sbjct: 565 GLRSKEFQLEVRTFNIMIVGLLKVGRIGDAKSLFSAILPSGLVPDAIIYGLMIQSHIEEG 624

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
             +    +   M+  G   N    N ++  + + G    A +   ++ E   + +  T  
Sbjct: 625 LLEESDELFLSMEKNGCTANSRTLNAIVRKLLEKGDVRRAGTYLTKIDEKEYSVEASTAV 684

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMD 396
            LI I  + ++ K+   L E+ +    P D
Sbjct: 685 LLISIVSERKYQKEVKFLPEKYQSFMEPRD 714



 Score = 41.2 bits (95), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 72/181 (39%), Gaps = 21/181 (11%)

Query: 339 KAGKPGL--ARSLFDEMVESGLTPDEKTLTALIKIYGKA-------RWAKDALELWERMR 389
           ++G  GL  A +LFDE++    +        ++ +             A  A+ L+  M 
Sbjct: 24  RSGSLGLEDALNLFDELLPRARSASVHAFNRVLTVVAHGDSSSSQRHGAALAVSLFNTMA 83

Query: 390 E---NKWPMDFILYNTLLNMCADIGLVEEA-------ERLFEDMKLSD--YCKPDNYSYT 437
           +   NK   D   +  L+    ++GL++ A        R    M   D   C P+  SY 
Sbjct: 84  QVGVNKLATDACTFGILIRCFCNVGLLDFALEEESRGSRAAVHMMADDGYNCPPNVLSYN 143

Query: 438 AMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDR 497
            ++N     G VD A  LF EM   G   N++    +I  L KA+ +D    V     D+
Sbjct: 144 MVINGLFKEGEVDKAYTLFHEMLGQGFPPNIVTYNSVIDGLCKAQAMDKAEAVLQQMFDK 203

Query: 498 G 498
           G
Sbjct: 204 G 204


>gi|449462479|ref|XP_004148968.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 580

 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 91/363 (25%), Positives = 163/363 (44%), Gaps = 17/363 (4%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           +N  +  L   + +  +  L N+M  + +  D  T + ++ C    N   E    F  + 
Sbjct: 72  FNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNILLNCLCNVNRLREGFAAFAGIL 131

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
           + G  P+ VTY+ ++       ++ E   L+ R    G  PD + +  L K    +G+ +
Sbjct: 132 RRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNIN 191

Query: 310 GIRYVLQEMKS------LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM---------- 353
               + QEM +      +  +PN++ YN +++ + K G+   A+ LF+EM          
Sbjct: 192 IALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPNEM 251

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
           ++ GL PD  T   LI    K     +A +L   M E+    D + YN+L+     +G +
Sbjct: 252 LDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDL 311

Query: 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTC 473
             A  LF  M  S  C+PD  SY  ++N Y     V+ A++L+ EM  +G   NV+    
Sbjct: 312 NSARELFVSMP-SKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDS 370

Query: 474 LIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN 533
           L++ +  A ++DD  ++F V    G+  +    G  L  +   +   +  K+ T L+ +N
Sbjct: 371 LLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSN 430

Query: 534 PKL 536
            KL
Sbjct: 431 FKL 433



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 86/358 (24%), Positives = 160/358 (44%), Gaps = 46/358 (12%)

Query: 203 FQLIEQLANEMVSNEIEL--DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDE--- 257
            +L +++ N++   EI    + ITY+ I+    +    DEA + FE M   G++P+E   
Sbjct: 194 LKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPNEMLD 253

Query: 258 -------VTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDG 310
                  VT++ ++D   K GKV E   L    + SG  PD + ++ L + F   GD + 
Sbjct: 254 QGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNS 313

Query: 311 IRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK 370
            R +   M S G +P+++ YN L+    K  K   A  L++EM+  G  P+  T  +L+K
Sbjct: 314 ARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLK 373

Query: 371 IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY-- 428
               A    DA +L+  M+ +    +   Y   L+       + EA +LF ++K S++  
Sbjct: 374 GIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKL 433

Query: 429 ------------CK--------------------PDNYSYTAMLNIYGSGGNVDNAIELF 456
                       CK                    P+  +YT M++ +   G VD A  L 
Sbjct: 434 EIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLI 493

Query: 457 EEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVS 514
           ++M   G   +++    L++   ++ +++++V++      + V PD   C  ++ ++S
Sbjct: 494 QKMEANGCTPDIITYNTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAITCSIVVDMLS 551



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/339 (23%), Positives = 158/339 (46%), Gaps = 15/339 (4%)

Query: 173 FFNWIKSQNLFPMET---------IFYNVTMKSLRFGRQFQLIE--QLANEMVSNEIELD 221
            F  +K+Q + P E          + +NV + +L   ++ ++IE  +L   M+ + I  D
Sbjct: 237 LFEEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTL--CKEGKVIEAKKLLGVMIESGIVPD 294

Query: 222 NITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYE 281
            +TY+++I         + A E F  M   G  PD ++Y+ +++ Y+K+ KVEE + LY 
Sbjct: 295 LVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYN 354

Query: 282 RGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG 341
             +  G +P+ I +  L K    +G  D  + +   MK+ G+  N   Y   L+ + K  
Sbjct: 355 EMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKND 414

Query: 342 KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYN 401
               A  LF E+  S    + + L  LI    KA   + A EL+E++       + + Y 
Sbjct: 415 CLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYT 474

Query: 402 TLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461
            +++     G V++A  L + M+ ++ C PD  +Y  ++  +     ++  ++L   M++
Sbjct: 475 IMIHGFCREGQVDKANVLIQKME-ANGCTPDIITYNTLMRGFYESNKLEEVVQLLHRMAQ 533

Query: 462 LGVAINVMGCTCLIQCLGKARRIDDLVRVFG-VSIDRGV 499
             V+ + + C+ ++  L K  +  + + +     I +GV
Sbjct: 534 KDVSPDAITCSIVVDMLSKDEKYQECLHLLPRFPIQKGV 572



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 86/331 (25%), Positives = 142/331 (42%), Gaps = 52/331 (15%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           +TY+T+I      +   EA   F RM K G  PD VTY  ++     +G +   L L++ 
Sbjct: 140 VTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQE 199

Query: 283 GVAS------GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG----------VQPN 326
            +          KP+ I ++++     + G  D  + + +EMK+ G          +QP+
Sbjct: 200 MLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPNEMLDQGLQPD 259

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
           +V +N L++ + K GK   A+ L   M+ESG+ PD  T  +LI+ +        A EL+ 
Sbjct: 260 MVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFV 319

Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
            M       D I YN L+N  +    VEEA +L+ +M L    +P+  +Y ++L      
Sbjct: 320 SMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGK-RPNVITYDSLLKGIFLA 378

Query: 447 GNVDNAIELFEEMSELGVAIN-----------------------------------VMGC 471
           G VD+A +LF  M   G+A N                                   +   
Sbjct: 379 GKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENL 438

Query: 472 TCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            CLI  L KA +++    +F    + G +P+
Sbjct: 439 NCLIDGLCKAGKLETAWELFEKLSNEGHEPN 469



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 108/241 (44%), Gaps = 25/241 (10%)

Query: 325 PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384
           P+L  +N LL  + K        SL+++M  SGL+ D  TL  L+         ++    
Sbjct: 67  PSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNILLNCLCNVNRLREGFAA 126

Query: 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM-KLSDYCKPDNYSYTAMLNIY 443
           +  +    +  + + YNTL+        + EA RLF  M KL   C PD  +Y  ++   
Sbjct: 127 FAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLG--CTPDVVTYGTLIKGL 184

Query: 444 GSGGNVDNAIELFEEM------SELGVAINVMGCTCLIQCLGKARRIDDLVRVF------ 491
              GN++ A++L +EM       E+    NV+    ++  L K  R D+  ++F      
Sbjct: 185 CGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQ 244

Query: 492 ----GVSIDRGVKPDDRLCGCLLSVVSLCETSE--DVGKVITCLQQAN--PKLVAFLNLI 543
                  +D+G++PD      L+   +LC+  +  +  K++  + ++   P LV + +LI
Sbjct: 245 GMIPNEMLDQGLQPDMVTFNVLID--TLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLI 302

Query: 544 E 544
           E
Sbjct: 303 E 303


>gi|15237384|ref|NP_197167.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171647|sp|Q9FMD3.1|PP389_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g16640, mitochondrial; Flags: Precursor
 gi|10176973|dbj|BAB10191.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737318|dbj|BAF00605.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004938|gb|AED92321.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 504

 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 82/332 (24%), Positives = 165/332 (49%), Gaps = 5/332 (1%)

Query: 172 FFFNWIKSQNLFPMETIF-YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIIT 230
            FF+ ++ +   P+ +I  ++  + ++   +++ ++  L  +M    I  +  T + ++ 
Sbjct: 68  LFFHMVQCR---PLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLN 124

Query: 231 CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
           C  RC+    A+ +  +M K G  P  VT+ ++L+ + +  +V + L ++++ V  G+KP
Sbjct: 125 CFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKP 184

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
           + + ++ +     +S   D    +L  M+  G+ P++V YN+L+  +  +G+   A  + 
Sbjct: 185 NVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMV 244

Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
             M +  + PD  T  ALI    K     +A E +E M       D + Y+ L+      
Sbjct: 245 SCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMY 304

Query: 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG 470
             ++EAE +F  M +S  C PD  +Y+ ++N Y     V++ ++LF EMS+ GV  N + 
Sbjct: 305 SRLDEAEEMFGFM-VSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVT 363

Query: 471 CTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            T LIQ   +A +++    +F   +  GV P+
Sbjct: 364 YTILIQGYCRAGKLNVAEEIFRRMVFCGVHPN 395



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 118/258 (45%), Gaps = 1/258 (0%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           W  +    + +  + ++P    F  +    ++ GR  +  E+   EM+   ++ D +TYS
Sbjct: 237 WSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSE-AEEFYEEMIRRSLDPDIVTYS 295

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
            +I      +  DEA E F  M   G  PD VTYS +++ Y KS KVE  + L+      
Sbjct: 296 LLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQR 355

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G   + + +++L + +  +G  +    + + M   GV PN++ YN LL  +   GK   A
Sbjct: 356 GVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKA 415

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
             +  +M ++G+  D  T   +I+   KA    DA +++  +       D   Y T++  
Sbjct: 416 LVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMMLG 475

Query: 407 CADIGLVEEAERLFEDMK 424
               GL  EA+ LF  MK
Sbjct: 476 LYKKGLRREADALFRKMK 493



 Score = 97.4 bits (241), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 143/328 (43%), Gaps = 5/328 (1%)

Query: 140 AFLRAITEIPHQPTRENALLILNSLKFWQKSY---FFFNWIKSQNLFPMETIFYNVTMKS 196
           +FL  + ++ H+P+      +LN      + Y   + F+ +      P   + YN  +  
Sbjct: 137 SFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKP-NVVIYNTIIDG 195

Query: 197 LRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPD 256
           L   +Q      L N M  + I  D +TY+++I+       + +A      M K  + PD
Sbjct: 196 LCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPD 255

Query: 257 EVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQ 316
             T++A++D   K G+V E    YE  +     PD + +S+L          D    +  
Sbjct: 256 VFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFG 315

Query: 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
            M S G  P++V Y+ L+    K+ K      LF EM + G+  +  T T LI+ Y +A 
Sbjct: 316 FMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAG 375

Query: 377 WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY 436
               A E++ RM       + I YN LL+   D G +E+A  +  DM+ +     D  +Y
Sbjct: 376 KLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGM-DADIVTY 434

Query: 437 TAMLNIYGSGGNVDNAIELFEEMSELGV 464
             ++      G V +A +++  ++  G+
Sbjct: 435 NIIIRGMCKAGEVADAWDIYCSLNCQGL 462



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 87/394 (22%), Positives = 163/394 (41%), Gaps = 6/394 (1%)

Query: 112 RSTYSYNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTRENALLILNSLKFWQKSY 171
           R  YS     R++     +    D++ + F   +   P     + + L+    K  +   
Sbjct: 40  RRAYSNGSDYREMLRNGIRFMKLDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDV 99

Query: 172 FFFNWIKSQNL-FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIIT 230
             + W + Q L  P      N+ +       Q  L      +M+    E   +T+ +++ 
Sbjct: 100 VIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLN 159

Query: 231 CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
              R +   +A+  F++M   G  P+ V Y+ I+D   KS +V+  L L  R    G  P
Sbjct: 160 GFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGP 219

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
           D + ++ L      SG +     ++  M    + P++  +N L++A  K G+   A   +
Sbjct: 220 DVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFY 279

Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAK--DALELWERMRENKWPMDFILYNTLLNMCA 408
           +EM+   L PD  T + LI  YG   +++  +A E++  M       D + Y+ L+N   
Sbjct: 280 EEMIRRSLDPDIVTYSLLI--YGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYC 337

Query: 409 DIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINV 468
               VE   +LF +M      + +  +YT ++  Y   G ++ A E+F  M   GV  N+
Sbjct: 338 KSKKVEHGMKLFCEMSQRGVVR-NTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNI 396

Query: 469 MGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           +    L+  L    +I+  + +       G+  D
Sbjct: 397 ITYNVLLHGLCDNGKIEKALVILADMQKNGMDAD 430



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 128/283 (45%), Gaps = 3/283 (1%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + YN  +  L    ++    ++ + M   EI  D  T++ +I    +     EA E++
Sbjct: 220 DVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFY 279

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           E M +  L PD VTYS ++       +++E   ++   V+ G  PD + +S+L   + +S
Sbjct: 280 EEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKS 339

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
              +    +  EM   GV  N V Y  L++   +AGK  +A  +F  MV  G+ P+  T 
Sbjct: 340 KKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITY 399

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
             L+         + AL +   M++N    D + YN ++      G V +A  ++  +  
Sbjct: 400 NVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNC 459

Query: 426 SDYCKPDNYSYTA-MLNIYGSGGNVDNAIELFEEMSELGVAIN 467
                PD ++YT  ML +Y  G   + A  LF +M E G+  N
Sbjct: 460 QGL-MPDIWTYTTMMLGLYKKGLRRE-ADALFRKMKEDGILPN 500



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 109/219 (49%), Gaps = 1/219 (0%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           F+  +  ++L P + + Y++ +  L    +    E++   MVS     D +TYS +I   
Sbjct: 278 FYEEMIRRSLDP-DIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGY 336

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +    +  ++ F  M + G++ + VTY+ ++  Y ++GK+     ++ R V  G  P+ 
Sbjct: 337 CKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNI 396

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           I ++VL     ++G  +    +L +M+  G+  ++V YN ++  M KAG+   A  ++  
Sbjct: 397 ITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCS 456

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN 391
           +   GL PD  T T ++    K    ++A  L+ +M+E+
Sbjct: 457 LNCQGLMPDIWTYTTMMLGLYKKGLRREADALFRKMKED 495



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 92/189 (48%), Gaps = 1/189 (0%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           F ++ S+  FP + + Y++ +      ++ +   +L  EM    +  + +TY+ +I    
Sbjct: 314 FGFMVSKGCFP-DVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYC 372

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
           R    + A E F RM   G+ P+ +TY+ +L     +GK+E+ L +      +G   D +
Sbjct: 373 RAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIV 432

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
            ++++ +   ++G+      +   +   G+ P++  Y T++  + K G    A +LF +M
Sbjct: 433 TYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLYKKGLRREADALFRKM 492

Query: 354 VESGLTPDE 362
            E G+ P+E
Sbjct: 493 KEDGILPNE 501



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 92/201 (45%), Gaps = 9/201 (4%)

Query: 349 LFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN-MC 407
           LF  MV+    P     + L+    K +     + LWE+M+    P +    N LLN  C
Sbjct: 68  LFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFC 127

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
               L      L + +KL    +P   ++ ++LN +  G  V +A+ +F++M  +G   N
Sbjct: 128 RCSQLSLALSFLGKMIKLGH--EPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPN 185

Query: 468 VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSE--DVGKV 525
           V+    +I  L K++++D+ + +       G+ PD      L+S   LC +    D  ++
Sbjct: 186 VVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLIS--GLCSSGRWSDATRM 243

Query: 526 ITCL--QQANPKLVAFLNLIE 544
           ++C+  ++  P +  F  LI+
Sbjct: 244 VSCMTKREIYPDVFTFNALID 264


>gi|302781402|ref|XP_002972475.1| hypothetical protein SELMODRAFT_97561 [Selaginella moellendorffii]
 gi|300159942|gb|EFJ26561.1| hypothetical protein SELMODRAFT_97561 [Selaginella moellendorffii]
          Length = 406

 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 80/265 (30%), Positives = 126/265 (47%), Gaps = 3/265 (1%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D  TY+ +I    +C   +  +E  E M   GL P+   ++ ++D +++SGK E+V++L+
Sbjct: 116 DEFTYAALINGFCKCMDTEVTLELLEEMLARGLRPNLALFNMMMDAHSRSGKHEQVIALF 175

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
           ER V    +PDP ++ VL + F  SG  D     +Q        P+L  YNTL+  +GKA
Sbjct: 176 ERMVEHECRPDPKSYRVLVEAFAVSGRIDEAFGFVQRYADSENAPHLGAYNTLMNRLGKA 235

Query: 341 GKPGLARSLFDEMVES-GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
            K   A  +F ++ +     PD  T   LI + GK     +    +++MR +  P D   
Sbjct: 236 NKAHAALEIFYKIKDRPNYKPDLVTYNVLIDLLGKVGKIDECWSCYQKMRLHFQP-DIFS 294

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           YNTLL      G V+    + +DM   D  + D  +Y  ++  Y   GN+D A+   EEM
Sbjct: 295 YNTLLGRLGRAGRVDLFASVLDDMS-RDGVQQDRITYAILVEGYARAGNLDVALAYLEEM 353

Query: 460 SELGVAINVMGCTCLIQCLGKARRI 484
              G +        L+  L KA R 
Sbjct: 354 KSSGFSPTPSALEVLVNSLLKAGRF 378



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 72/313 (23%), Positives = 143/313 (45%), Gaps = 5/313 (1%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           F+ ++   + P    ++ +  K +R  +  +++  +   M  N +  +  TY+ +I+   
Sbjct: 36  FHKMEFSEIKPTLDDYHYIMFKLIRL-KCPRVVPMIFESMRKNLVRPNTQTYNFLISSLC 94

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
                 EA  W     K    PDE TY+A+++ + K    E  L L E  +A G +P+  
Sbjct: 95  SLGKMAEA-RWRFSYMKKYCDPDEFTYAALINGFCKCMDTEVTLELLEEMLARGLRPNLA 153

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
            F+++      SG ++ +  + + M     +P+   Y  L+EA   +G+   A       
Sbjct: 154 LFNMMMDAHSRSGKHEQVIALFERMVEHECRPDPKSYRVLVEAFAVSGRIDEAFGFVQRY 213

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN-KWPMDFILYNTLLNMCADIGL 412
            +S   P       L+   GKA  A  ALE++ ++++   +  D + YN L+++   +G 
Sbjct: 214 ADSENAPHLGAYNTLMNRLGKANKAHAALEIFYKIKDRPNYKPDLVTYNVLIDLLGKVGK 273

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
           ++E    ++ M+L  + +PD +SY  +L   G  G VD    + ++MS  GV  + +   
Sbjct: 274 IDECWSCYQKMRL--HFQPDIFSYNTLLGRLGRAGRVDLFASVLDDMSRDGVQQDRITYA 331

Query: 473 CLIQCLGKARRID 485
            L++   +A  +D
Sbjct: 332 ILVEGYARAGNLD 344



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 108/237 (45%), Gaps = 4/237 (1%)

Query: 189 FYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
            +N+ M +  R G+  Q+I  L   MV +E   D  +Y  ++         DEA  + +R
Sbjct: 154 LFNMMMDAHSRSGKHEQVI-ALFERMVEHECRPDPKSYRVLVEAFAVSGRIDEAFGFVQR 212

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL-YERGVASGWKPDPIAFSVLGKMFGESG 306
              +   P    Y+ +++   K+ K    L + Y+      +KPD + ++VL  + G+ G
Sbjct: 213 YADSENAPHLGAYNTLMNRLGKANKAHAALEIFYKIKDRPNYKPDLVTYNVLIDLLGKVG 272

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
             D      Q+M+ L  QP++  YNTLL  +G+AG+  L  S+ D+M   G+  D  T  
Sbjct: 273 KIDECWSCYQKMR-LHFQPDIFSYNTLLGRLGRAGRVDLFASVLDDMSRDGVQQDRITYA 331

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
            L++ Y +A     AL   E M+ + +         L+N     G    AE + ++M
Sbjct: 332 ILVEGYARAGNLDVALAYLEEMKSSGFSPTPSALEVLVNSLLKAGRFGAAEAVVQEM 388



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 72/147 (48%), Gaps = 1/147 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D +TY+ +I    +    DE    +++M +    PD  +Y+ +L    ++G+V+   S+ 
Sbjct: 257 DLVTYNVLIDLLGKVGKIDECWSCYQKM-RLHFQPDIFSYNTLLGRLGRAGRVDLFASVL 315

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
           +     G + D I +++L + +  +G+ D     L+EMKS G  P       L+ ++ KA
Sbjct: 316 DDMSRDGVQQDRITYAILVEGYARAGNLDVALAYLEEMKSSGFSPTPSALEVLVNSLLKA 375

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTA 367
           G+ G A ++  EM      P +K +T 
Sbjct: 376 GRFGAAEAVVQEMAAINGGPGKKIVTG 402



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 56/116 (48%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D  +Y+T++    R    D      + M + G+  D +TY+ +++ YA++G ++  L+  
Sbjct: 291 DIFSYNTLLGRLGRAGRVDLFASVLDDMSRDGVQQDRITYAILVEGYARAGNLDVALAYL 350

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA 336
           E   +SG+ P P A  VL     ++G +     V+QEM ++   P   +    L A
Sbjct: 351 EEMKSSGFSPTPSALEVLVNSLLKAGRFGAAEAVVQEMAAINGGPGKKIVTGTLAA 406



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 2/121 (1%)

Query: 384 LWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIY 443
           ++E MR+N    +   YN L++    +G + EA   F  MK   YC PD ++Y A++N +
Sbjct: 70  IFESMRKNLVRPNTQTYNFLISSLCSLGKMAEARWRFSYMK--KYCDPDEFTYAALINGF 127

Query: 444 GSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
               + +  +EL EEM   G+  N+     ++    ++ + + ++ +F   ++   +PD 
Sbjct: 128 CKCMDTEVTLELLEEMLARGLRPNLALFNMMMDAHSRSGKHEQVIALFERMVEHECRPDP 187

Query: 504 R 504
           +
Sbjct: 188 K 188


>gi|410110133|gb|AFV61146.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           rhodocnemis]
          Length = 345

 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 81/345 (23%), Positives = 165/345 (47%), Gaps = 6/345 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K     P + + YN  +      + F+    L +EM +  +  +  +YS
Sbjct: 3   YSKAISIFSRLKRLGFMP-DLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYS 61

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY + G  +E   L+      
Sbjct: 62  TLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 121

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   ++ N+V YN+++   GK  +   A
Sbjct: 122 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKA 181

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R +   +D IL+ T++  
Sbjct: 182 NNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVA 241

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K     +PDN      ++I    G ++ A  +F +  + G   
Sbjct: 242 YERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVK 296

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
           ++     +I  L K ++  ++V VF      G  PD  +   +L+
Sbjct: 297 DITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLN 341



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 100/206 (48%), Gaps = 1/206 (0%)

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
           DY     +   +K LG  P+LV YN ++   GKA     ARSL  EM  +G+ P+  + +
Sbjct: 2   DYSKAISIFSRLKRLGFMPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYS 61

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
            L+ +Y + +   +AL ++  MRE K  +D    N ++++   +G+ +EA++LF  M+  
Sbjct: 62  TLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 121

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
              +P+  SY  +L +YG       AI LF  M    +  NV+    +I   GK    + 
Sbjct: 122 G-IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEK 180

Query: 487 LVRVFGVSIDRGVKPDDRLCGCLLSV 512
              +      RG++P+      ++S+
Sbjct: 181 ANNLIQEMQSRGIEPNSITYSTIISI 206



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 76/166 (45%), Gaps = 4/166 (2%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  EM S  IE ++ITYSTII+   +    D A   F+++  +G+  D++ +  ++  Y 
Sbjct: 184 LIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYE 243

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           ++G V       +R +    +PD I       +   +G  +   YV ++    G   ++ 
Sbjct: 244 RAGLVAHA----KRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDIT 299

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK 374
           V+  ++  + K  K      +FD+M   G  PD   +  ++  YGK
Sbjct: 300 VFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGK 345



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 68/153 (44%), Gaps = 1/153 (0%)

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
           A+ ++ R++   +  D + YN ++N+     L  EA  L  +MK +    P+  SY+ +L
Sbjct: 6   AISIFSRLKRLGFMPDLVAYNAMINVFGKAKLFREARSLISEMKTAG-VMPNTTSYSTLL 64

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
            +Y        A+ +F EM E+   +++  C  +I   G+     +  ++F      G++
Sbjct: 65  TMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 124

Query: 501 PDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN 533
           P+      LL V    E   +   +   +Q+ N
Sbjct: 125 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKN 157


>gi|302769784|ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
 gi|300163955|gb|EFJ30565.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
          Length = 600

 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 140/281 (49%), Gaps = 4/281 (1%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           TY+ +I    + +  +EA E F  + K GL PD +TY+  +D   K+G+VE+ L + +  
Sbjct: 295 TYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDM 354

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
              G  PD ++ + +     +    D    +L  M++ G  PN + +NTL+    +AGK 
Sbjct: 355 DEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKW 414

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARW---AKDALELWERMRENKWPMDFILY 400
             A + F EM++ G+ P   T   L+    KAR     K+A+ L++ M E     D + Y
Sbjct: 415 KKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTY 474

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           + L++     G +++A RL   M+ +  C P+ Y+Y ++++       VD A+ELF  M 
Sbjct: 475 SALIDGLGKAGKLDDARRLLGAME-AKGCIPNVYTYNSLISGLCGLDKVDEALELFVAMV 533

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
           E G   + +    +I  L K   +D  + +F  S++ GV P
Sbjct: 534 EKGCVPDTITYGTIISALCKQEMVDKALALFDGSLEAGVVP 574



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 89/336 (26%), Positives = 166/336 (49%), Gaps = 7/336 (2%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           +K++ F   +  + L  + T  +N+ +  L    +    + + + M  +    + ITY+ 
Sbjct: 33  EKAHRFVEQLLVKGLCDIST--FNIYISGLCRASRIGDAQTVFDGMRKHGFWPNRITYNA 90

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           +++         +A   +ERM K G  PD VTY+ +L  + K GK++E L +++  V  G
Sbjct: 91  LLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGKLDEALKIFDGAVKRG 150

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
           + PD + ++ L   F ++   D  + +LQ M S  + P++V YN+L+  + K G+   AR
Sbjct: 151 FVPDVVTYNALINGFCKADKLDEAQRILQRMVSESLVPDVVTYNSLVNGLCKNGRVDEAR 210

Query: 348 SLFDEMVESGLTPDEKTLTALIK-IYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            L   +V+ G +P+  T + LI  +  + R  + A +L E+M  N    D + YN L++ 
Sbjct: 211 ML---IVDKGFSPNVITYSTLISGLCRELRRLESARQLLEKMVLNGCKPDIVSYNALIHG 267

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
            A    V EA +LF  +    Y +P+  +Y  +++       V+ A ELF  + + G+  
Sbjct: 268 LAREQGVSEALKLFGSVLRQGY-EPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEP 326

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           + +  T  I  L KA R++D + +     ++G  PD
Sbjct: 327 DAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPD 362



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 155/314 (49%), Gaps = 6/314 (1%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           F+ ++    +P   I YN  +  L  G +    + L   M+      D +TY+T++    
Sbjct: 73  FDGMRKHGFWP-NRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFC 131

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
           +    DEA++ F+   K G +PD VTY+A+++ + K+ K++E   + +R V+    PD +
Sbjct: 132 KVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSESLVPDVV 191

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA-GKPGLARSLFDE 352
            ++ L     ++G  D  R ++ +    G  PN++ Y+TL+  + +   +   AR L ++
Sbjct: 192 TYNSLVNGLCKNGRVDEARMLIVDK---GFSPNVITYSTLISGLCRELRRLESARQLLEK 248

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           MV +G  PD  +  ALI    + +   +AL+L+  +    +  +   YN L++       
Sbjct: 249 MVLNGCKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILIDGLLKEDR 308

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
           V EA  LF  + +    +PD  +YT  ++     G V++A+ + ++M E G   +V+   
Sbjct: 309 VNEAFELFSGL-VKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHN 367

Query: 473 CLIQCLGKARRIDD 486
            +I  L K +R+D+
Sbjct: 368 AVINGLCKEKRVDE 381



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/316 (26%), Positives = 148/316 (46%), Gaps = 10/316 (3%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           I     +KS +  +  + +EQL  + +      D  T++  I+   R +   +A   F+ 
Sbjct: 21  ILLRSLLKSGKIEKAHRFVEQLLVKGLC-----DISTFNIYISGLCRASRIGDAQTVFDG 75

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M K G  P+ +TY+A+L      G++ +  +LYER + +G+ PD + ++ L   F + G 
Sbjct: 76  MRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGK 135

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
            D    +       G  P++V YN L+    KA K   A+ +   MV   L PD  T  +
Sbjct: 136 LDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSESLVPDVVTYNS 195

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN-MCADIGLVEEAERLFEDMKLS 426
           L+    K     +A  L   + +  +  + I Y+TL++ +C ++  +E A +L E M L+
Sbjct: 196 LVNGLCKNGRVDEARML---IVDKGFSPNVITYSTLISGLCRELRRLESARQLLEKMVLN 252

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
             CKPD  SY A+++       V  A++LF  +   G    V     LI  L K  R+++
Sbjct: 253 G-CKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNE 311

Query: 487 LVRVFGVSIDRGVKPD 502
              +F   +  G++PD
Sbjct: 312 AFELFSGLVKHGLEPD 327



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 119/249 (47%), Gaps = 6/249 (2%)

Query: 255 PDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYV 314
           PD  T   +L    KSGK+E+     E+ +  G   D   F++       +      + V
Sbjct: 14  PDAYTVGILLRSLLKSGKIEKAHRFVEQLLVKGL-CDISTFNIYISGLCRASRIGDAQTV 72

Query: 315 LQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK 374
              M+  G  PN + YN LL  +   G+   A++L++ M+++G +PD  T   L+  + K
Sbjct: 73  FDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCK 132

Query: 375 ARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNY 434
                +AL++++   +  +  D + YN L+N       ++EA+R+ + M +S+   PD  
Sbjct: 133 VGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRM-VSESLVPDVV 191

Query: 435 SYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA-RRIDDLVRVFGV 493
           +Y +++N     G VD A  L   + + G + NV+  + LI  L +  RR++   ++   
Sbjct: 192 TYNSLVNGLCKNGRVDEARML---IVDKGFSPNVITYSTLISGLCRELRRLESARQLLEK 248

Query: 494 SIDRGVKPD 502
            +  G KPD
Sbjct: 249 MVLNGCKPD 257



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 103/239 (43%), Gaps = 38/239 (15%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + +N  +  L   ++    E L + M +     + I+++T+I    R   + +A+  F
Sbjct: 362 DVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTF 421

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKS---GKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
           + M K G+ P  VTY+ ++D   K+   G+++E ++L++  +  G  PD + +S L    
Sbjct: 422 KEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGL 481

Query: 303 GESGDYDGIRYVLQEMKSLGVQPNLVVYN------------------------------- 331
           G++G  D  R +L  M++ G  PN+  YN                               
Sbjct: 482 GKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEALELFVAMVEKGCVPDT 541

Query: 332 ----TLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
               T++ A+ K      A +LFD  +E+G+ P      +LI          +AL+L +
Sbjct: 542 ITYGTIISALCKQEMVDKALALFDGSLEAGVVPTSGMYFSLIDGLCAVARVDEALKLLQ 600


>gi|255574572|ref|XP_002528197.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532409|gb|EEF34204.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 642

 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 95/381 (24%), Positives = 166/381 (43%), Gaps = 41/381 (10%)

Query: 160 ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSN-EI 218
           +L   K   K+   F  IK +   P  T  YN  +  L+     + + ++ NEM ++   
Sbjct: 172 LLGKAKMVNKALSVFYQIKGRKCKPAATT-YNSMILMLKQEGHLEKVHEIYNEMCNDGNC 230

Query: 219 ELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY----------- 267
             D +TYS +I+   +   +D AI  F+ M + GL P    Y+ +L +Y           
Sbjct: 231 FPDTVTYSALISAFGKLGHYDSAIRLFDEMKENGLYPTAKIYTTLLGIYFKLDKVEKALD 290

Query: 268 ------------------------AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
                                    K+G+V++   ++   +  G KPD +  + L  + G
Sbjct: 291 VIKEMKDKGCTLTVFTYTEWIKGLGKAGRVDDAYRVFLDMIKDGCKPDVVLINSLINILG 350

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGL-ARSLFDEMVESGLTPDE 362
           + G  +    + ++M+S   +PN+V YNT+++A+ +   P   A S F++M   G+ P  
Sbjct: 351 KVGRLEVTLKLFRKMESWQCKPNVVTYNTVIKALFECKAPASEAASWFEKMKGCGIAPSS 410

Query: 363 KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED 422
            T + LI  + K    + AL L E M E  +P     Y +L+N    +   E A  LF  
Sbjct: 411 FTYSILIDGFCKTNRIEKALLLLEEMDEKGFPPCPAAYCSLINSLGKVKRYEAANELF-- 468

Query: 423 MKLSDYCKPDNYS-YTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
           ++L + C   +   Y  M+  +G  G +  A++LF EM +LG   +V     L+  + +A
Sbjct: 469 LELKENCGHSSARVYAVMIKHFGKCGRLSEAVDLFNEMEKLGSKPDVYAYNALMSGMVRA 528

Query: 482 RRIDDLVRVFGVSIDRGVKPD 502
             ID+   +     + G  PD
Sbjct: 529 GMIDEAQSLLRTMDENGCSPD 549



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/284 (29%), Positives = 134/284 (47%), Gaps = 3/284 (1%)

Query: 198 RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNL-FDEAIEWFERMYKTGLMPD 256
           + GR  ++  +L  +M S + + + +TY+T+I     C     EA  WFE+M   G+ P 
Sbjct: 351 KVGR-LEVTLKLFRKMESWQCKPNVVTYNTVIKALFECKAPASEAASWFEKMKGCGIAPS 409

Query: 257 EVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQ 316
             TYS ++D + K+ ++E+ L L E     G+ P P A+  L    G+   Y+    +  
Sbjct: 410 SFTYSILIDGFCKTNRIEKALLLLEEMDEKGFPPCPAAYCSLINSLGKVKRYEAANELFL 469

Query: 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
           E+K      +  VY  +++  GK G+   A  LF+EM + G  PD     AL+    +A 
Sbjct: 470 ELKENCGHSSARVYAVMIKHFGKCGRLSEAVDLFNEMEKLGSKPDVYAYNALMSGMVRAG 529

Query: 377 WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY 436
              +A  L   M EN    D   +N +LN  A  G+ + A  +F  MK S   KPD  SY
Sbjct: 530 MIDEAQSLLRTMDENGCSPDLNSHNIILNGLARTGVPDRAIEMFAKMK-SSIIKPDAVSY 588

Query: 437 TAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK 480
             +L      G  + A +L  EM+  G   N +  T +++ +GK
Sbjct: 589 NTVLGCLSHAGLFEEAAKLMREMNLKGFEYNNITYTSILEAVGK 632



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 116/253 (45%), Gaps = 38/253 (15%)

Query: 330 YNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT-LTALIKIYGKARWAKDALELWERM 388
           +  L+ ++ +AG  G       +MV S         L+ ++K+ GKA+    AL ++ ++
Sbjct: 130 FMALIHSLDEAGFYGEMWKTIQDMVRSSTCVISSVYLSEIVKLLGKAKMVNKALSVFYQI 189

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
           +  K       YN+++ M    G +E+   ++ +M     C PD  +Y+A+++ +G  G+
Sbjct: 190 KGRKCKPAATTYNSMILMLKQEGHLEKVHEIYNEMCNDGNCFPDTVTYSALISAFGKLGH 249

Query: 449 VDNAIELFEEMSELGV----------------------AINVM------GCTCL------ 474
            D+AI LF+EM E G+                      A++V+      GCT        
Sbjct: 250 YDSAIRLFDEMKENGLYPTAKIYTTLLGIYFKLDKVEKALDVIKEMKDKGCTLTVFTYTE 309

Query: 475 -IQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQ--Q 531
            I+ LGKA R+DD  RVF   I  G KPD  L   L++++      E   K+   ++  Q
Sbjct: 310 WIKGLGKAGRVDDAYRVFLDMIKDGCKPDVVLINSLINILGKVGRLEVTLKLFRKMESWQ 369

Query: 532 ANPKLVAFLNLIE 544
             P +V +  +I+
Sbjct: 370 CKPNVVTYNTVIK 382



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 97/200 (48%), Gaps = 2/200 (1%)

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           +  S + K+ G++   +    V  ++K    +P    YN+++  + + G       +++E
Sbjct: 164 VYLSEIVKLLGKAKMVNKALSVFYQIKGRKCKPAATTYNSMILMLKQEGHLEKVHEIYNE 223

Query: 353 MVESG-LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411
           M   G   PD  T +ALI  +GK      A+ L++ M+EN       +Y TLL +   + 
Sbjct: 224 MCNDGNCFPDTVTYSALISAFGKLGHYDSAIRLFDEMKENGLYPTAKIYTTLLGIYFKLD 283

Query: 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC 471
            VE+A  + ++MK    C    ++YT  +   G  G VD+A  +F +M + G   +V+  
Sbjct: 284 KVEKALDVIKEMK-DKGCTLTVFTYTEWIKGLGKAGRVDDAYRVFLDMIKDGCKPDVVLI 342

Query: 472 TCLIQCLGKARRIDDLVRVF 491
             LI  LGK  R++  +++F
Sbjct: 343 NSLINILGKVGRLEVTLKLF 362



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 87/192 (45%)

Query: 183 FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
           FP     Y   + SL   ++++   +L  E+  N        Y+ +I    +C    EA+
Sbjct: 441 FPPCPAAYCSLINSLGKVKRYEAANELFLELKENCGHSSARVYAVMIKHFGKCGRLSEAV 500

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
           + F  M K G  PD   Y+A++    ++G ++E  SL      +G  PD  + +++    
Sbjct: 501 DLFNEMEKLGSKPDVYAYNALMSGMVRAGMIDEAQSLLRTMDENGCSPDLNSHNIILNGL 560

Query: 303 GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
             +G  D    +  +MKS  ++P+ V YNT+L  +  AG    A  L  EM   G   + 
Sbjct: 561 ARTGVPDRAIEMFAKMKSSIIKPDAVSYNTVLGCLSHAGLFEEAAKLMREMNLKGFEYNN 620

Query: 363 KTLTALIKIYGK 374
            T T++++  GK
Sbjct: 621 ITYTSILEAVGK 632


>gi|356566887|ref|XP_003551657.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 525

 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 89/323 (27%), Positives = 152/323 (47%), Gaps = 7/323 (2%)

Query: 183 FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
           F + T+   + +K    GR F+ +  L +  VS     D + Y T+I    +     +AI
Sbjct: 127 FTLTTLMKGLCLK----GRTFEAL-NLYDHAVSKGFSFDEVCYGTLINGLCKMGKTRDAI 181

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
           E   +M K G+ P+ + Y+ ++D   K G V E   L    V  G   D   ++ L   F
Sbjct: 182 ELLRKMEKGGVRPNLIMYNMVVDGLCKEGLVTEACGLCSEMVGKGICIDVFTYNSLIHGF 241

Query: 303 GESGDYDGIRYVLQEM-KSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD 361
             +G + G   +L EM     V+P++  +N L++A+ K G    AR++F  M++ GL PD
Sbjct: 242 CGAGQFQGAVRLLNEMVMKEDVRPDVYTFNILVDALCKLGMVAEARNVFGLMIKRGLEPD 301

Query: 362 EKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFE 421
             +  AL+  +       +A E+++RM E     + I Y+TL+N    + +V+EA RL  
Sbjct: 302 VVSCNALMNGWCLRGCMSEAKEVFDRMVERGKLPNVISYSTLINGYCKVKMVDEALRLLT 361

Query: 422 DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
           +M   +   PD  +Y  +L+     G V    +L E M   G A +++    L+    K 
Sbjct: 362 EMHQRNLV-PDTVTYNCLLDGLSKSGRVLYEWDLVEAMRASGQAPDLITYNVLLDDYLKR 420

Query: 482 RRIDDLVRVFGVSIDRGVKPDDR 504
             +D  + +F   +D G+ P+ R
Sbjct: 421 ECLDKALALFQHIVDTGISPNIR 443



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 122/258 (47%), Gaps = 2/258 (0%)

Query: 185 METIFYNVTMKSLRFGRQFQLIEQLANEMVSNE-IELDNITYSTIITCAKRCNLFDEAIE 243
           ++   YN  +       QFQ   +L NEMV  E +  D  T++ ++    +  +  EA  
Sbjct: 229 IDVFTYNSLIHGFCGAGQFQGAVRLLNEMVMKEDVRPDVYTFNILVDALCKLGMVAEARN 288

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
            F  M K GL PD V+ +A+++ +   G + E   +++R V  G  P+ I++S L   + 
Sbjct: 289 VFGLMIKRGLEPDVVSCNALMNGWCLRGCMSEAKEVFDRMVERGKLPNVISYSTLINGYC 348

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
           +    D    +L EM    + P+ V YN LL+ + K+G+      L + M  SG  PD  
Sbjct: 349 KVKMVDEALRLLTEMHQRNLVPDTVTYNCLLDGLSKSGRVLYEWDLVEAMRASGQAPDLI 408

Query: 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
           T   L+  Y K      AL L++ + +     +   YN L++     G ++ A+ +F+ +
Sbjct: 409 TYNVLLDDYLKRECLDKALALFQHIVDTGISPNIRTYNILIDGLCKGGRMKAAKEIFQLL 468

Query: 424 KLSDYCKPDNYSYTAMLN 441
            +   C+P+  +Y  M+N
Sbjct: 469 SVKG-CRPNIRTYNIMIN 485



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 122/278 (43%), Gaps = 7/278 (2%)

Query: 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW-KPDPIAFS 296
           FD+A+  F RM      P  V+ + +L    K+     V+SL     + G  KP  +  S
Sbjct: 36  FDDAVSTFHRMLHLHPPPSIVSLNKLLSSIMKTKHYPTVVSLCSHLDSKGTPKPSLVTLS 95

Query: 297 VLGKMFGESGDYDGIRYVLQEM--KSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMV 354
           +        G       V+ ++  +  GV P      TL++ +   G+   A +L+D  V
Sbjct: 96  IFINSLTHLGQMGLAFSVMAKIVKRGFGVDP--FTLTTLMKGLCLKGRTFEALNLYDHAV 153

Query: 355 ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
             G + DE     LI    K    +DA+EL  +M +     + I+YN +++     GLV 
Sbjct: 154 SKGFSFDEVCYGTLINGLCKMGKTRDAIELLRKMEKGGVRPNLIMYNMVVDGLCKEGLVT 213

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM-SELGVAINVMGCTC 473
           EA  L  +M     C  D ++Y ++++ +   G    A+ L  EM  +  V  +V     
Sbjct: 214 EACGLCSEMVGKGICI-DVFTYNSLIHGFCGAGQFQGAVRLLNEMVMKEDVRPDVYTFNI 272

Query: 474 LIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
           L+  L K   + +   VFG+ I RG++PD   C  L++
Sbjct: 273 LVDALCKLGMVAEARNVFGLMIKRGLEPDVVSCNALMN 310


>gi|449454139|ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
 gi|449524964|ref|XP_004169491.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
          Length = 611

 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 158/322 (49%), Gaps = 4/322 (1%)

Query: 183 FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
           + +  +  N  + +L    +F  +E +  EM+  +I  + IT++T+I    +    ++A 
Sbjct: 191 YKLSVLSCNPLLSALVKENEFGGVEFVYKEMIRRKISPNLITFNTVINGLCKVGKLNKAG 250

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL---SLYERGVASGWKPDPIAFSVLG 299
           +  + M   G  P+ VTY+ ++D Y K G+V ++    ++ +  V +   P+ + F+VL 
Sbjct: 251 DVVDDMKVWGFWPNVVTYNTLIDGYCKMGRVGKMYKADAILKEMVENKVSPNSVTFNVLI 310

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
             F +  +      V +EM+S G++P +V YN+L+  +   GK   A+ L DEM+ S L 
Sbjct: 311 DGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLK 370

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
           P+  T  ALI  Y K +  ++A EL++ + +     + I +NTLL+     G +EEA  L
Sbjct: 371 PNVITYNALINGYCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEA-FL 429

Query: 420 FEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479
            + + L     P+  +Y  ++  +   G ++    L  EM   GV  + +    LI    
Sbjct: 430 LQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNILISAWC 489

Query: 480 KARRIDDLVRVFGVSIDRGVKP 501
           + +      R+    +D+G+KP
Sbjct: 490 EKKEPKKAARLIDEMLDKGLKP 511



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/251 (29%), Positives = 129/251 (51%), Gaps = 3/251 (1%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           F  ++SQ L P   + YN  +  L    +    + L +EM+S+ ++ + ITY+ +I    
Sbjct: 326 FEEMQSQGLKP-TVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYC 384

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
           +  L +EA E F+ + K GL P+ +T++ +L  Y K GK+EE   L +  +  G+ P+  
Sbjct: 385 KKKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNAS 444

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
            ++ L   F   G  + ++ +L EM+  GV+ + V YN L+ A  +  +P  A  L DEM
Sbjct: 445 TYNCLIVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEM 504

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERM-RENKWPMDFILYNTLLNMCADIGL 412
           ++ GL P   T   L+  Y      + AL L ++M +E +W  + + YN L+      G 
Sbjct: 505 LDKGLKPSHLTYNILLNGYCMEGNLRAALNLRKQMEKEGRWA-NVVTYNVLIQGYCRKGK 563

Query: 413 VEEAERLFEDM 423
           +E+A  L  +M
Sbjct: 564 LEDANGLLNEM 574



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 149/305 (48%), Gaps = 2/305 (0%)

Query: 198 RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDE 257
           R G+ ++  + +  EMV N++  +++T++ +I    +      A++ FE M   GL P  
Sbjct: 280 RVGKMYK-ADAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTV 338

Query: 258 VTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQE 317
           VTY+++++     GK+ E   L +  ++S  KP+ I ++ L   + +    +  R +   
Sbjct: 339 VTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDN 398

Query: 318 MKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARW 377
           +   G+ PN++ +NTLL    K GK   A  L   M+E G  P+  T   LI  + +   
Sbjct: 399 IGKQGLTPNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGK 458

Query: 378 AKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYT 437
            ++   L   M+      D + YN L++   +    ++A RL ++M L    KP + +Y 
Sbjct: 459 MEEVKNLLNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEM-LDKGLKPSHLTYN 517

Query: 438 AMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDR 497
            +LN Y   GN+  A+ L ++M + G   NV+    LIQ   +  +++D   +    +++
Sbjct: 518 ILLNGYCMEGNLRAALNLRKQMEKEGRWANVVTYNVLIQGYCRKGKLEDANGLLNEMLEK 577

Query: 498 GVKPD 502
           G+ P+
Sbjct: 578 GLIPN 582



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 127/288 (44%), Gaps = 41/288 (14%)

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
           Y ++ K    L  ++R     +K   ++ + L     +  ++ G+ +V +EM    + PN
Sbjct: 170 YVENSKTVLGLEAFKRAGDYRYKLSVLSCNPLLSALVKENEFGGVEFVYKEMIRRKISPN 229

Query: 327 LVVYNTLLEA--------------------------------------MGKAGKPGLARS 348
           L+ +NT++                                        MG+ GK   A +
Sbjct: 230 LITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYCKMGRVGKMYKADA 289

Query: 349 LFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCA 408
           +  EMVE+ ++P+  T   LI  + K      AL+++E M+        + YN+L+N   
Sbjct: 290 ILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLC 349

Query: 409 DIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINV 468
           + G + EA+ L ++M LS   KP+  +Y A++N Y     ++ A ELF+ + + G+  NV
Sbjct: 350 NEGKLNEAKVLLDEM-LSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGLTPNV 408

Query: 469 MGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLC 516
           +    L+    K  ++++   +  V +++G  P+     CL  +V  C
Sbjct: 409 ITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCL--IVGFC 454



 Score = 39.3 bits (90), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 27/131 (20%), Positives = 62/131 (47%), Gaps = 3/131 (2%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           +T+ YN+ + +    ++ +   +L +EM+   ++  ++TY+ ++           A+   
Sbjct: 477 DTVTYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNILLNGYCMEGNLRAALNLR 536

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           ++M K G   + VTY+ ++  Y + GK+E+   L    +  G  P+   + ++ +   E 
Sbjct: 537 KQMEKEGRWANVVTYNVLIQGYCRKGKLEDANGLLNEMLEKGLIPNRTTYEIIKEEMMEK 596

Query: 306 G---DYDGIRY 313
           G   D +G  Y
Sbjct: 597 GFLPDIEGHLY 607


>gi|359481811|ref|XP_002278330.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Vitis vinifera]
          Length = 848

 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 96/414 (23%), Positives = 178/414 (42%), Gaps = 51/414 (12%)

Query: 130 KLNDCDNTEEAFLRAITEIPHQPTREN-ALLI--LNSLKFWQKSYFFFNWIKSQNLFPME 186
           KLN  D+ E    R +       +R+N  LLI  +  +   + S   F W+K+Q  +   
Sbjct: 106 KLNHWDDVEGLLNRWVGRF----SRKNFPLLIREITQIGSLEHSVQVFRWMKNQKNYCAR 161

Query: 187 TIFYNVTMKSLRFGRQFQLIEQ---LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
              YN+    +R   +  +++Q   L  EM     + D  TY+ +I    R   +  A+ 
Sbjct: 162 NDIYNMM---IRLHARHNIVDQARGLFFEMQKWRCKPDAETYNALINAHGRAGQWRWAMN 218

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
             + M +  + P   TY+ +++    SG  +E L++ ++   +G  PD +  +++   + 
Sbjct: 219 IMDDMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTENGVGPDLVTHNIVLSAYK 278

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES------- 356
               Y  +    + MK   ++P+    N ++  + K G+ G A  +F+ M E        
Sbjct: 279 RGNQYSKVLSYFELMKGTNIRPDTTTLNIVIYCLVKLGQNGKAIDIFNSMKEKRSECYPD 338

Query: 357 ------------------------------GLTPDEKTLTALIKIYGKARWAKDALELWE 386
                                         GL P+  +  ALI  Y      K+A  ++ 
Sbjct: 339 VVTFTTIIHLYSVCGQIENCQTAFNTMLAEGLKPNIVSYNALIGAYASHGMDKEAFSVFN 398

Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
            +++N +  D + Y +LLN     G  E+A ++FE M+  ++CKP+  SY A+++ YGS 
Sbjct: 399 EIKKNGFHPDVVSYTSLLNAYGKSGKPEKAMKVFELMR-RNHCKPNLVSYNALIDAYGSK 457

Query: 447 GNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
           G +  A+E+  EM   GV  N++    L+   G+  +   +  V   +  RG+K
Sbjct: 458 GLLTEAVEILHEMERNGVQPNIVSICTLLAACGRCGQKVKIKSVLSAAELRGIK 511



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 139/315 (44%), Gaps = 36/315 (11%)

Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS 261
           Q +  +   N M++  ++ + ++Y+ +I       +  EA   F  + K G  PD V+Y+
Sbjct: 354 QIENCQTAFNTMLAEGLKPNIVSYNALIGAYASHGMDKEAFSVFNEIKKNGFHPDVVSYT 413

Query: 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
           ++L+ Y KSGK E+ + ++E    +  KP+ ++++ L   +G  G       +L EM+  
Sbjct: 414 SLLNAYGKSGKPEKAMKVFELMRRNHCKPNLVSYNALIDAYGSKGLLTEAVEILHEMERN 473

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
           GVQPN+V   TLL A G+ G+    +S+       G+  +     + I  Y        A
Sbjct: 474 GVQPNIVSICTLLAACGRCGQKVKIKSVLSAAELRGIKLNTTAYNSAIGSYLSVGEYDKA 533

Query: 382 LELWERMRENKWPMDFILYNTLLNMCADI------------------------------- 410
           L L+  MR  K   D + YN L++ C  +                               
Sbjct: 534 LSLYRAMRTKKVKPDPVTYNVLISGCCKMSKYGEALGFLDEMMDLKIPLSKEVYSSVICA 593

Query: 411 ----GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               G V EAE +F  MK+   C+PD  +YTAM++ Y    N + A  LF EM    V  
Sbjct: 594 YSKQGQVTEAESMFTKMKMVG-CRPDVITYTAMIHAYDVAENWEKASALFLEMETDDVQP 652

Query: 467 NVMGCTCLIQCLGKA 481
           + + C+ L++   K 
Sbjct: 653 DSIACSSLMRAFNKG 667



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 145/326 (44%), Gaps = 5/326 (1%)

Query: 136 NTEEAFLRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMK 195
           N  +  LRA    P + T  N +    S   W+++      +    + P + + +N+ + 
Sbjct: 218 NIMDDMLRAAIP-PSRSTYNNLINACGSSGNWKEALNVCKKMTENGVGP-DLVTHNIVLS 275

Query: 196 SLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY--KTGL 253
           + + G Q+  +      M    I  D  T + +I C  +     +AI+ F  M   ++  
Sbjct: 276 AYKRGNQYSKVLSYFELMKGTNIRPDTTTLNIVIYCLVKLGQNGKAIDIFNSMKEKRSEC 335

Query: 254 MPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRY 313
            PD VT++ I+ +Y+  G++E   + +   +A G KP+ ++++ L   +   G       
Sbjct: 336 YPDVVTFTTIIHLYSVCGQIENCQTAFNTMLAEGLKPNIVSYNALIGAYASHGMDKEAFS 395

Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYG 373
           V  E+K  G  P++V Y +LL A GK+GKP  A  +F+ M  +   P+  +  ALI  YG
Sbjct: 396 VFNEIKKNGFHPDVVSYTSLLNAYGKSGKPEKAMKVFELMRRNHCKPNLVSYNALIDAYG 455

Query: 374 KARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDN 433
                 +A+E+   M  N    + +   TLL  C   G   + + +    +L    K + 
Sbjct: 456 SKGLLTEAVEILHEMERNGVQPNIVSICTLLAACGRCGQKVKIKSVLSAAELRG-IKLNT 514

Query: 434 YSYTAMLNIYGSGGNVDNAIELFEEM 459
            +Y + +  Y S G  D A+ L+  M
Sbjct: 515 TAYNSAIGSYLSVGEYDKALSLYRAM 540



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 139/284 (48%), Gaps = 5/284 (1%)

Query: 222 NITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYE 281
           N  Y+ +I    R N+ D+A   F  M K    PD  TY+A+++ + ++G+    +++ +
Sbjct: 162 NDIYNMMIRLHARHNIVDQARGLFFEMQKWRCKPDAETYNALINAHGRAGQWRWAMNIMD 221

Query: 282 RGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG 341
             + +   P    ++ L    G SG++     V ++M   GV P+LV +N +L A  +  
Sbjct: 222 DMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTENGVGPDLVTHNIVLSAYKRGN 281

Query: 342 KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENK---WPMDFI 398
           +     S F+ M  + + PD  TL  +I    K      A++++  M+E +   +P D +
Sbjct: 282 QYSKVLSYFELMKGTNIRPDTTTLNIVIYCLVKLGQNGKAIDIFNSMKEKRSECYP-DVV 340

Query: 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458
            + T++++ +  G +E  +  F  M L++  KP+  SY A++  Y S G    A  +F E
Sbjct: 341 TFTTIIHLYSVCGQIENCQTAFNTM-LAEGLKPNIVSYNALIGAYASHGMDKEAFSVFNE 399

Query: 459 MSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           + + G   +V+  T L+   GK+ + +  ++VF +      KP+
Sbjct: 400 IKKNGFHPDVVSYTSLLNAYGKSGKPEKAMKVFELMRRNHCKPN 443



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 61/284 (21%), Positives = 133/284 (46%), Gaps = 1/284 (0%)

Query: 185 METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEW 244
           + T  YN  + S     ++     L   M + +++ D +TY+ +I+   + + + EA+ +
Sbjct: 512 LNTTAYNSAIGSYLSVGEYDKALSLYRAMRTKKVKPDPVTYNVLISGCCKMSKYGEALGF 571

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
            + M    +   +  YS+++  Y+K G+V E  S++ +    G +PD I ++ +   +  
Sbjct: 572 LDEMMDLKIPLSKEVYSSVICAYSKQGQVTEAESMFTKMKMVGCRPDVITYTAMIHAYDV 631

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
           + +++    +  EM++  VQP+ +  ++L+ A  K G+P     L + M E  +  +  +
Sbjct: 632 AENWEKASALFLEMETDDVQPDSIACSSLMRAFNKGGQPAKVLVLAEFMREKKIPFNNSS 691

Query: 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
              ++      R  ++ + L + M  +   +   L N LL+     G +E   +LF  + 
Sbjct: 692 FFEMVSACSLLREWREIIGLIKLMEPSISVVSIGLLNQLLHFLGKSGKIETMMKLFYKIV 751

Query: 425 LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINV 468
            S   + + Y+Y+ +L    + GN    IE+ + M E G+  +V
Sbjct: 752 ASG-AEINFYTYSILLKNLLAAGNWRKYIEVLQWMEEAGLQPSV 794



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 69/318 (21%), Positives = 130/318 (40%), Gaps = 51/318 (16%)

Query: 163 SLKFWQKSYFFFNWIKSQNLFPMETIFYNVTM----KSLRFGRQFQLIEQLANEMVSNEI 218
           S+  + K+   +  ++++ + P + + YNV +    K  ++G     ++    EM+  +I
Sbjct: 526 SVGEYDKALSLYRAMRTKKVKP-DPVTYNVLISGCCKMSKYGEALGFLD----EMMDLKI 580

Query: 219 ELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS 278
            L    YS++I    +     EA   F +M   G  PD +TY+A++  Y  +   E+  +
Sbjct: 581 PLSKEVYSSVICAYSKQGQVTEAESMFTKMKMVGCRPDVITYTAMIHAYDVAENWEKASA 640

Query: 279 LYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGV--------------- 323
           L+        +PD IA S L + F + G    +  + + M+   +               
Sbjct: 641 LFLEMETDDVQPDSIACSSLMRAFNKGGQPAKVLVLAEFMREKKIPFNNSSFFEMVSACS 700

Query: 324 ---------------QPNLVVY-----NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
                          +P++ V      N LL  +GK+GK      LF ++V SG   +  
Sbjct: 701 LLREWREIIGLIKLMEPSISVVSIGLLNQLLHFLGKSGKIETMMKLFYKIVASGAEINFY 760

Query: 364 TLTALIK-IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED 422
           T + L+K +     W K  +E+ + M E        +Y ++ +   +    E A  + E 
Sbjct: 761 TYSILLKNLLAAGNWRK-YIEVLQWMEEAGLQPSVGMYRSISSFAQNRSGAEYAAVIQER 819

Query: 423 MKLSDYCKPDNYSYTAML 440
           + +     PDN S  A+L
Sbjct: 820 IGM-----PDNSSSQALL 832


>gi|410110115|gb|AFV61137.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           hederifolia]
          Length = 364

 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 83/367 (22%), Positives = 171/367 (46%), Gaps = 6/367 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K     P + + YN  +      + F+    L +EM +  +  +  +YS
Sbjct: 3   YSKAISIFSRLKRSGFTP-DLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYS 61

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY + G  +E   L+      
Sbjct: 62  TLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 121

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   ++ N+V YN+++   GK  +   A
Sbjct: 122 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKSIEQNVVTYNSMMMIYGKTLEHEKA 181

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R +   +D IL+ T++  
Sbjct: 182 NNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVA 241

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K     +PDN      ++I    G ++ A  +F +  + G   
Sbjct: 242 YERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVK 296

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           ++     +I  L K ++  ++V VF      G  PD  +   +L+     +  +    V 
Sbjct: 297 DITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVY 356

Query: 527 TCLQQAN 533
             +Q+  
Sbjct: 357 MEMQEVG 363



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 99/206 (48%), Gaps = 1/206 (0%)

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
           DY     +   +K  G  P+LV YN ++   GKA     ARSL  EM  +G+ P+  + +
Sbjct: 2   DYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYS 61

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
            L+ +Y + +   +AL ++  MRE K  +D    N ++++   +G+ +EA++LF  M+  
Sbjct: 62  TLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 121

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
              +P+  SY  +L +YG       AI LF  M    +  NV+    ++   GK    + 
Sbjct: 122 G-IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKSIEQNVVTYNSMMMIYGKTLEHEK 180

Query: 487 LVRVFGVSIDRGVKPDDRLCGCLLSV 512
              +      RG++P+      ++S+
Sbjct: 181 ANNLIQEMQSRGIEPNSITYSTIISI 206


>gi|242061542|ref|XP_002452060.1| hypothetical protein SORBIDRAFT_04g017840 [Sorghum bicolor]
 gi|241931891|gb|EES05036.1| hypothetical protein SORBIDRAFT_04g017840 [Sorghum bicolor]
          Length = 674

 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 147/326 (45%), Gaps = 43/326 (13%)

Query: 177 IKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCN 236
           I S  + P +T  YN  +K L F +Q++  E+L  EM+ N    + +T++T I    +  
Sbjct: 210 IASMPVAP-DTYTYNTVLKGLCFAKQWEEAEELMREMIRNNCHPNEVTFATQIRAFCQNG 268

Query: 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS 296
           L D A+E  E+M K G MPD V YS +++ +++ G+V++ L L                 
Sbjct: 269 LLDRAVELLEQMPKYGCMPDVVIYSTLVNGFSEHGRVDDALKL----------------- 311

Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356
                                + ++  +PN V YN  L+ +  AG+      L  EMV  
Sbjct: 312 ---------------------LSTMLCRPNTVCYNAALKGLCIAGRWDEVGELIAEMVRK 350

Query: 357 GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEA 416
              P++ T + LI    + R A+ A+E+ E+M++  +  D + YNT+++  ++    ++A
Sbjct: 351 DCPPNDATFSTLINSLCQNRLAEYAIEVLEQMQKYGYMPDVVSYNTIISCFSEQACADDA 410

Query: 417 ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
            +L   M     CKPD  S+ A+L          +A EL  +M +     N M    LI 
Sbjct: 411 LKLLNSM----LCKPDTISFNAVLKCLCRAERWYDAAELMAKMLKEDCHTNEMTFNILID 466

Query: 477 CLGKARRIDDLVRVFGVSIDRGVKPD 502
            L +  ++ D + +F +       PD
Sbjct: 467 SLCQNGQVKDAIEMFELMPKYRCTPD 492



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 113/239 (47%), Gaps = 7/239 (2%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D I+++ ++ C  R   + +A E   +M K     +E+T++ ++D   ++G+V++ + ++
Sbjct: 422 DTISFNAVLKCLCRAERWYDAAELMAKMLKEDCHTNEMTFNILIDSLCQNGQVKDAIEMF 481

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
           E        PD + +S L   F E G  D + + L   +S+  + ++  YN  L+ +  A
Sbjct: 482 ELMPKYRCTPDIVTYSSLINGFSEQG-LDKVAFDL--FRSMPCRADIFSYNATLKGLCMA 538

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
            +   A  L  +MV     P+E T   LI    +      A+E++E+M +     D   Y
Sbjct: 539 ARWDDAGELIADMVTKDCLPNEVTFNILINSLCQKGLVNRAIEVYEQMPKYGITPDIFTY 598

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           N L+N  ++ G +++A +    M     C+PD  SY ++L          +A +L  EM
Sbjct: 599 NALINGYSEQGCLDDALKFLSTMP----CEPDTISYNSILKGLCRAERWKDAEKLVTEM 653



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 63/265 (23%), Positives = 122/265 (46%), Gaps = 7/265 (2%)

Query: 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
           +DE  E    M +    P++ T+S +++   ++   E  + + E+    G+ PD ++++ 
Sbjct: 337 WDEVGELIAEMVRKDCPPNDATFSTLINSLCQNRLAEYAIEVLEQMQKYGYMPDVVSYNT 396

Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
           +   F E    D     L+ + S+  +P+ + +N +L+ + +A +   A  L  +M++  
Sbjct: 397 IISCFSEQACADD---ALKLLNSMLCKPDTISFNAVLKCLCRAERWYDAAELMAKMLKED 453

Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417
              +E T   LI    +    KDA+E++E M + +   D + Y++L+N  ++ GL + A 
Sbjct: 454 CHTNEMTFNILIDSLCQNGQVKDAIEMFELMPKYRCTPDIVTYSSLINGFSEQGLDKVAF 513

Query: 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
            LF  M     C+ D +SY A L         D+A EL  +M       N +    LI  
Sbjct: 514 DLFRSMP----CRADIFSYNATLKGLCMAARWDDAGELIADMVTKDCLPNEVTFNILINS 569

Query: 478 LGKARRIDDLVRVFGVSIDRGVKPD 502
           L +   ++  + V+      G+ PD
Sbjct: 570 LCQKGLVNRAIEVYEQMPKYGITPD 594



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 132/292 (45%), Gaps = 24/292 (8%)

Query: 145 ITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQ 204
           I+    Q   ++AL +LNS+                 L   +TI +N  +K L    ++ 
Sbjct: 398 ISCFSEQACADDALKLLNSM-----------------LCKPDTISFNAVLKCLCRAERWY 440

Query: 205 LIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAIL 264
              +L  +M+  +   + +T++ +I    +     +AIE FE M K    PD VTYS+++
Sbjct: 441 DAAELMAKMLKEDCHTNEMTFNILIDSLCQNGQVKDAIEMFELMPKYRCTPDIVTYSSLI 500

Query: 265 DVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQ 324
           + +++ G  +    L+    +   + D  +++   K    +  +D    ++ +M +    
Sbjct: 501 NGFSEQGLDKVAFDLFR---SMPCRADIFSYNATLKGLCMAARWDDAGELIADMVTKDCL 557

Query: 325 PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384
           PN V +N L+ ++ + G    A  ++++M + G+TPD  T  ALI  Y +     DAL+ 
Sbjct: 558 PNEVTFNILINSLCQKGLVNRAIEVYEQMPKYGITPDIFTYNALINGYSEQGCLDDALKF 617

Query: 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY 436
              M       D I YN++L         ++AE+L  +M L   C P+  ++
Sbjct: 618 LSTM---PCEPDTISYNSILKGLCRAERWKDAEKLVTEM-LRKNCTPNEVTF 665



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 127/291 (43%), Gaps = 11/291 (3%)

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY- 308
           KT    D V+++ ++  Y + G + +   + E   ASG   + + ++ L   +  SG   
Sbjct: 146 KTSGAADAVSHNTLVAGYCRDGSLWDAERVLEAARASG-AANVVTYTALIDGYCRSGRLT 204

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
           D +R +     S+ V P+   YNT+L+ +  A +   A  L  EM+ +   P+E T    
Sbjct: 205 DALRLI----ASMPVAPDTYTYNTVLKGLCFAKQWEEAEELMREMIRNNCHPNEVTFATQ 260

Query: 369 IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428
           I+ + +      A+EL E+M +     D ++Y+TL+N  ++ G V++A +L   M     
Sbjct: 261 IRAFCQNGLLDRAVELLEQMPKYGCMPDVVIYSTLVNGFSEHGRVDDALKLLSTM----L 316

Query: 429 CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLV 488
           C+P+   Y A L      G  D   EL  EM       N    + LI  L + R  +  +
Sbjct: 317 CRPNTVCYNAALKGLCIAGRWDEVGELIAEMVRKDCPPNDATFSTLINSLCQNRLAEYAI 376

Query: 489 RVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAF 539
            V       G  PD      ++S  S    ++D  K++  +    P  ++F
Sbjct: 377 EVLEQMQKYGYMPDVVSYNTIISCFSEQACADDALKLLNSM-LCKPDTISF 426


>gi|356523854|ref|XP_003530549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g16890, mitochondrial-like [Glycine max]
          Length = 678

 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 80/321 (24%), Positives = 155/321 (48%), Gaps = 1/321 (0%)

Query: 222 NITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYE 281
           N  ++ ++ C  +     E  + FE + K G+      Y A+++V  K+   EE   +Y 
Sbjct: 359 NSVFNVVMACLVKGAELRETCDVFEILRKQGVKAGIGAYLALIEVLYKNEWREEGDRVYG 418

Query: 282 RGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG 341
           + ++ G   +  +++++   F  +   D      ++M+  GV PNLV +NTL+    K G
Sbjct: 419 QLISDGLISNVFSYNMIINCFCRAKLMDNASEAFRDMQVRGVVPNLVTFNTLINGHCKDG 478

Query: 342 KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYN 401
               AR L + ++E+GL PD  T ++++    + +  ++ALE +  M E     + ++YN
Sbjct: 479 AIDKARKLLESLLENGLKPDIFTFSSIVDGLCQIKRTEEALECFTEMIEWGINPNAVIYN 538

Query: 402 TLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461
            L+     IG V  + +L   M+  +   PD YSY A++ I+     V+ A +LF+ MS 
Sbjct: 539 ILIRSLCTIGDVARSVKLLRRMQ-KEGISPDTYSYNALIQIFCRMNKVEKAKKLFDSMSR 597

Query: 462 LGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSED 521
            G+  +    +  I+ L ++ R+++  ++F      G  PD  +C  ++ ++   E  E+
Sbjct: 598 SGLNPDNYTYSAFIEALSESGRLEEAKKMFYSMEANGCSPDSYICNLIIKILVQQEYVEE 657

Query: 522 VGKVITCLQQANPKLVAFLNL 542
              +I   +Q    L +  NL
Sbjct: 658 AQNIIERCRQKGISLNSIPNL 678



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 132/261 (50%), Gaps = 1/261 (0%)

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
           +++  +++S+ +  +  +Y+ II C  R  L D A E F  M   G++P+ VT++ +++ 
Sbjct: 414 DRVYGQLISDGLISNVFSYNMIINCFCRAKLMDNASEAFRDMQVRGVVPNLVTFNTLING 473

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
           + K G +++   L E  + +G KPD   FS +     +    +       EM   G+ PN
Sbjct: 474 HCKDGAIDKARKLLESLLENGLKPDIFTFSSIVDGLCQIKRTEEALECFTEMIEWGINPN 533

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
            V+YN L+ ++   G    +  L   M + G++PD  +  ALI+I+ +    + A +L++
Sbjct: 534 AVIYNILIRSLCTIGDVARSVKLLRRMQKEGISPDTYSYNALIQIFCRMNKVEKAKKLFD 593

Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
            M  +    D   Y+  +   ++ G +EEA+++F  M+ ++ C PD+Y    ++ I    
Sbjct: 594 SMSRSGLNPDNYTYSAFIEALSESGRLEEAKKMFYSME-ANGCSPDSYICNLIIKILVQQ 652

Query: 447 GNVDNAIELFEEMSELGVAIN 467
             V+ A  + E   + G+++N
Sbjct: 653 EYVEEAQNIIERCRQKGISLN 673



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 75/385 (19%), Positives = 160/385 (41%), Gaps = 44/385 (11%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
           T  YN  + +L       L      +M ++    D  TY+T+I    +  + DEA+    
Sbjct: 179 TRLYNALIDALVKSNSIDLAYLKFQQMAADNCVADRFTYNTLIHGVCKVGVVDEALRLVR 238

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP---------------- 290
           +M   G  P+  TY+ +++ +  + +V+E   ++E    SG  P                
Sbjct: 239 QMKDKGHFPNVFTYTMLIEGFCIASRVDEAFGVFETMKDSGVYPNEATVRALVHGVFRCV 298

Query: 291 DPI-AFSVLGKMFGESGDYDGIRYVL---------------QEMKSL--------GVQPN 326
           DP  A  +L +      + + + ++L               +EM           G  P 
Sbjct: 299 DPSKALELLSEFLDREQEQERVHFMLACDTVLYCLANNSMAKEMVVFLRRVLGRGGYFPG 358

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
             V+N ++  + K  +      +F+ + + G+        ALI++  K  W ++   ++ 
Sbjct: 359 NSVFNVVMACLVKGAELRETCDVFEILRKQGVKAGIGAYLALIEVLYKNEWREEGDRVYG 418

Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
           ++  +    +   YN ++N      L++ A   F DM++     P+  ++  ++N +   
Sbjct: 419 QLISDGLISNVFSYNMIINCFCRAKLMDNASEAFRDMQVRGVV-PNLVTFNTLINGHCKD 477

Query: 447 GNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLC 506
           G +D A +L E + E G+  ++   + ++  L + +R ++ +  F   I+ G+ P+  + 
Sbjct: 478 GAIDKARKLLESLLENGLKPDIFTFSSIVDGLCQIKRTEEALECFTEMIEWGINPNAVIY 537

Query: 507 GCLLSVVSLCETSEDVGKVITCLQQ 531
             L+   SLC T  DV + +  L++
Sbjct: 538 NILIR--SLC-TIGDVARSVKLLRR 559



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/270 (22%), Positives = 115/270 (42%), Gaps = 4/270 (1%)

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
           R  L + +   F ++   GL P    Y+A++D   KS  ++     +++  A     D  
Sbjct: 156 RLGLANYSAHVFCQISFLGLSPTTRLYNALIDALVKSNSIDLAYLKFQQMAADNCVADRF 215

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
            ++ L     + G  D    ++++MK  G  PN+  Y  L+E    A +   A  +F+ M
Sbjct: 216 TYNTLIHGVCKVGVVDEALRLVRQMKDKGHFPNVFTYTMLIEGFCIASRVDEAFGVFETM 275

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALEL----WERMRENKWPMDFILYNTLLNMCAD 409
            +SG+ P+E T+ AL+    +      ALEL     +R +E +     +  +T+L   A+
Sbjct: 276 KDSGVYPNEATVRALVHGVFRCVDPSKALELLSEFLDREQEQERVHFMLACDTVLYCLAN 335

Query: 410 IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVM 469
             + +E       +       P N  +  ++     G  +    ++FE + + GV   + 
Sbjct: 336 NSMAKEMVVFLRRVLGRGGYFPGNSVFNVVMACLVKGAELRETCDVFEILRKQGVKAGIG 395

Query: 470 GCTCLIQCLGKARRIDDLVRVFGVSIDRGV 499
               LI+ L K    ++  RV+G  I  G+
Sbjct: 396 AYLALIEVLYKNEWREEGDRVYGQLISDGL 425



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 3/172 (1%)

Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYG 373
           +L+E+++LG +    +   LL + G+ G    +  +F ++   GL+P  +   ALI    
Sbjct: 131 LLRELRNLGFRVTEDLLCALLASWGRLGLANYSAHVFCQISFLGLSPTTRLYNALIDALV 190

Query: 374 KARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDN 433
           K+     A   +++M  +    D   YNTL++    +G+V+EA RL   MK   +  P+ 
Sbjct: 191 KSNSIDLAYLKFQQMAADNCVADRFTYNTLIHGVCKVGVVDEALRLVRQMKDKGHF-PNV 249

Query: 434 YSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
           ++YT ++  +     VD A  +FE M + GV  N      L+   G  R +D
Sbjct: 250 FTYTMLIEGFCIASRVDEAFGVFETMKDSGVYPNEATVRALVH--GVFRCVD 299



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 74/144 (51%), Gaps = 8/144 (5%)

Query: 187 TIFYNVTMKSL----RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
            + YN+ ++SL       R  +L+ ++  E +S     D  +Y+ +I    R N  ++A 
Sbjct: 534 AVIYNILIRSLCTIGDVARSVKLLRRMQKEGISP----DTYSYNALIQIFCRMNKVEKAK 589

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
           + F+ M ++GL PD  TYSA ++  ++SG++EE   ++    A+G  PD    +++ K+ 
Sbjct: 590 KLFDSMSRSGLNPDNYTYSAFIEALSESGRLEEAKKMFYSMEANGCSPDSYICNLIIKIL 649

Query: 303 GESGDYDGIRYVLQEMKSLGVQPN 326
            +    +  + +++  +  G+  N
Sbjct: 650 VQQEYVEEAQNIIERCRQKGISLN 673



 Score = 50.1 bits (118), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 102/246 (41%), Gaps = 22/246 (8%)

Query: 313 YVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIY 372
           +V  ++  LG+ P   +YN L++A+ K+    LA   F +M       D  T   LI   
Sbjct: 165 HVFCQISFLGLSPTTRLYNALIDALVKSNSIDLAYLKFQQMAADNCVADRFTYNTLIHGV 224

Query: 373 GKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPD 432
            K     +AL L  +M++     +   Y  L+        V+EA  +FE MK S    P+
Sbjct: 225 CKVGVVDEALRLVRQMKDKGHFPNVFTYTMLIEGFCIASRVDEAFGVFETMKDSG-VYPN 283

Query: 433 NYSYTAMLNIYGSGGNVD--NAIELFEEM----SELGVAINVMGCTCLIQCLGKARRIDD 486
             +  A+  ++G    VD   A+EL  E      E      ++ C  ++ CL       +
Sbjct: 284 EATVRAL--VHGVFRCVDPSKALELLSEFLDREQEQERVHFMLACDTVLYCLANNSMAKE 341

Query: 487 LV----RVFGVSIDRGVKPDDR----LCGCLLSVVSLCETSEDVGKVITCLQQANPKLVA 538
           +V    RV G     G  P +     +  CL+    L ET  DV +++   Q     + A
Sbjct: 342 MVVFLRRVLGRG---GYFPGNSVFNVVMACLVKGAELRETC-DVFEILR-KQGVKAGIGA 396

Query: 539 FLNLIE 544
           +L LIE
Sbjct: 397 YLALIE 402


>gi|21618238|gb|AAM67288.1| unknown [Arabidopsis thaliana]
          Length = 463

 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 150/286 (52%), Gaps = 4/286 (1%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF-ERMYKTGLMPDEVTYSAILDV 266
           QL +EM+ + +  D  +Y+T+++C  +     EA +   E ++  GL+P   TY+ +LD 
Sbjct: 99  QLFDEMLHSGLSPDMWSYNTLMSCYFKLGRHGEAFKILHEDIHLAGLVPGIDTYNILLDA 158

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
             KSG  +  + L++  + S  KP+ + +++L     +S     + ++++E+K  G  PN
Sbjct: 159 LCKSGHTDNAIELFKH-LKSRVKPELMTYNILINGLCKSRRVGSVDWMMRELKKSGYTPN 217

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALE-LW 385
            V Y T+L+   K  +      LF +M + G T D     A++    K   A++A E + 
Sbjct: 218 AVTYTTMLKMYFKTKRIEKGLQLFLKMKKEGYTFDGFANCAVVSALIKTGRAEEAYECMH 277

Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445
           E +R      D + YNTLLN+    G ++  + L E++++    KPD+Y++T ++N   +
Sbjct: 278 ELVRSGTRSQDIVSYNTLLNLYFKDGNLDAVDDLLEEIEMKGL-KPDDYTHTIIVNGLLN 336

Query: 446 GGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
            GN   A +    + E+G+  +V+ C CLI  L KA  +D  +R+F
Sbjct: 337 IGNTGGAEKHLACIGEMGMQPSVVTCNCLIDGLCKAGHVDRAMRLF 382



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 81/184 (44%), Gaps = 9/184 (4%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
           T    +  K+ R  +  QL  ++  E  +     D      +++   +    +EA E   
Sbjct: 222 TTMLKMYFKTKRIEKGLQLFLKMKKEGYT----FDGFANCAVVSALIKTGRAEEAYECMH 277

Query: 247 RMYKTGLMP-DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
            + ++G    D V+Y+ +L++Y K G ++ V  L E     G KPD    +++       
Sbjct: 278 ELVRSGTRSQDIVSYNTLLNLYFKDGNLDAVDDLLEEIEMKGLKPDDYTHTIIVNGLLNI 337

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G+  G    L  +  +G+QP++V  N L++ + KAG    A  LF  M       DE T 
Sbjct: 338 GNTGGAEKHLACIGEMGMQPSVVTCNCLIDGLCKAGHVDRAMRLFASME----VRDEFTY 393

Query: 366 TALI 369
           T+++
Sbjct: 394 TSVV 397


>gi|449524916|ref|XP_004169467.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g74580-like [Cucumis
           sativus]
          Length = 877

 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 97/417 (23%), Positives = 179/417 (42%), Gaps = 71/417 (17%)

Query: 156 NALL-ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMV 214
           NA++ IL    ++ +++  +  +K   ++P +   + + MKS     +     +L N M 
Sbjct: 115 NAIMNILVEYGYFSQAHKVYMRMKDIGIYP-DVYTHTIRMKSFCITGRPTAALRLLNNMP 173

Query: 215 SNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVE 274
               E + ++Y  +I+   + N   EA   F+ M K G+ PD +T++ ++ V  K G V+
Sbjct: 174 GQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQ 233

Query: 275 EVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLL 334
           E   L+ + +  G  P+   F++  +     G  D    +L+ + S G+ P+++ YNTL+
Sbjct: 234 ESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLI 293

Query: 335 EAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD-------------- 380
               K  K   A     +MV SG+ P+E T   +I  + KA   ++              
Sbjct: 294 CGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFI 353

Query: 381 ---------------------ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
                                A+ ++    E  +    ILYNTL+   +  GLV +A +L
Sbjct: 354 PDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQL 413

Query: 420 FEDMK-----------------------LSDY-----------CKPDNYSYTAMLNIYGS 445
            +DM                        LSD            C PD +++  +++ Y  
Sbjct: 414 MKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCK 473

Query: 446 GGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
             N+D AIE+ + M   G+  +V+    L+  L KAR++D++V  F   +++G  P+
Sbjct: 474 QRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPN 530



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 141/318 (44%), Gaps = 39/318 (12%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           I Y+T++    +  L  +A++  + M + G  PD  TY+ +++   K G + +   +   
Sbjct: 392 ILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILND 451

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
            +A G  PD   F+ L   + +  + D    +L  M S G+ P+++ YNTLL  + KA K
Sbjct: 452 AIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARK 511

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM-------------- 388
                  F  M+E G TP+  T   LI+ + K R   +A+EL++ M              
Sbjct: 512 LDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCT 571

Query: 389 ----------------------RENKWPMDFILYNTLLN-MCADIGLVEEAERLFEDMKL 425
                                 +E K+     ++N ++N  C  +  V  AE+LF  M  
Sbjct: 572 LICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMINAFCXKLN-VSMAEKLFHKMGG 630

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
           SD C PDNY+Y  M++ Y   GN+D A     E    G+  +   C  ++ CL    R+ 
Sbjct: 631 SD-CAPDNYTYRVMIDSYCKTGNIDLAHTFLLENISKGLVPSFTTCGKVLNCLCVTHRLS 689

Query: 486 DLVRVFGVSIDRGVKPDD 503
           + V +  + +  G+ P++
Sbjct: 690 EAVVIINLMVQNGIVPEE 707



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 150/326 (46%), Gaps = 7/326 (2%)

Query: 177 IKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ--LANEMVSNEIELDNITYSTIITCAKR 234
           I S+ L P + I YN  +    F +  +L+E     ++MV++ +E +  TY+TII    +
Sbjct: 277 IVSEGLTP-DVISYNTLICG--FCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCK 333

Query: 235 CNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIA 294
             +   A +        G +PDE TYS++++     G +   ++++   +  G+K   I 
Sbjct: 334 AGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIIL 393

Query: 295 FSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMV 354
           ++ L K   + G       ++++M   G  P++  YN ++  + K G    A  + ++ +
Sbjct: 394 YNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAI 453

Query: 355 ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
             G  PD  T   LI  Y K R    A+E+ + M  +    D I YNTLLN       ++
Sbjct: 454 AKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLD 513

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
                F+ M L   C P+  +Y  ++  +     V  A+ELF+EM   G+  +++    L
Sbjct: 514 NVVDTFKAM-LEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTL 572

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVK 500
           I  L     +D    +F V+I++  K
Sbjct: 573 ICGLCSNGELDKAYELF-VTIEKEYK 597



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 81/344 (23%), Positives = 146/344 (42%), Gaps = 9/344 (2%)

Query: 161 LNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSN-EIE 219
           LN+LK        FN +K+++ F      Y   ++ L    +F+ +E +  EM  N + +
Sbjct: 21  LNALKM-------FNQVKTEDGFKHTLETYKCMIEKLGLHGKFEAMEDVLAEMRKNVDSK 73

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
           +    Y  I+    R     EA+  FERM      P   +Y+AI+++  + G   +   +
Sbjct: 74  MLEGVYIGIMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKV 133

Query: 280 YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
           Y R    G  PD    ++  K F  +G       +L  M   G + N V Y  ++    K
Sbjct: 134 YMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYK 193

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
                 A  LFDEM++ G+ PD  T   LI +  K    +++ +L+ ++ +     +   
Sbjct: 194 ENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFT 253

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           +N  +      G ++EA RL E + +S+   PD  SY  ++  +     +  A     +M
Sbjct: 254 FNIFIQGLCRKGAIDEAARLLESI-VSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKM 312

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
              GV  N      +I    KA  + +  ++   ++ +G  PD+
Sbjct: 313 VNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDE 356


>gi|125572252|gb|EAZ13767.1| hypothetical protein OsJ_03693 [Oryza sativa Japonica Group]
          Length = 715

 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 80/316 (25%), Positives = 145/316 (45%), Gaps = 8/316 (2%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
           T+      KS  FG+  ++++++  +  +  I    +TY+ II    R    D+A E+  
Sbjct: 215 TVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNI----VTYNVIINGMCREGRVDDAREFLN 270

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
           R+   G  PD V+Y+ +L     + + E+V  L+   +     P+ + F +L + F   G
Sbjct: 271 RLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGG 330

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
             +    VL++M   G   N  + N ++  + K G+   A    + M   G +PD  + T
Sbjct: 331 MVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYT 390

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
            ++K   +A   +DA EL + M     P + + +NT + +    GL+E+A  L E M   
Sbjct: 391 TVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMS-E 449

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
             C+ +  +Y A++N +   G VD+A+ELF  M       N +  T L+  L  A R+D 
Sbjct: 450 HGCEVNIVTYNALVNGFCVQGRVDSALELFYSMP---CKPNTITYTTLLTGLCNAERLDA 506

Query: 487 LVRVFGVSIDRGVKPD 502
              +    + +   P+
Sbjct: 507 AAELLAEMLQKDCAPN 522



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 93/406 (22%), Positives = 169/406 (41%), Gaps = 42/406 (10%)

Query: 135 DNTEEAFLRAITEIPHQPTRENALLILNSL---KFWQKSYFFFNWIKSQNLFPMETIFYN 191
           D+  E FL  ++    QP   +   +L  L   K W+     F  +  +N  P E  F  
Sbjct: 263 DDARE-FLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDM 321

Query: 192 VTMKSLRFG---RQFQLIEQLA-------------------------------NEMVSNE 217
           +     R G   R  Q++EQ++                               N M S  
Sbjct: 322 LVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYG 381

Query: 218 IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL 277
              D I+Y+T++    R   +++A E  + M +    P+EVT++  + +  + G +E+  
Sbjct: 382 CSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQAT 441

Query: 278 SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
            L E+    G + + + ++ L   F   G  D     L+   S+  +PN + Y TLL  +
Sbjct: 442 MLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDS---ALELFYSMPCKPNTITYTTLLTGL 498

Query: 338 GKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDF 397
             A +   A  L  EM++    P+  T   L+  + +     +A+EL E+M E+    + 
Sbjct: 499 CNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNL 558

Query: 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE 457
           I YNTLL+        EEA  L   + +S+   PD  +Y++++ +      V+ AI++F 
Sbjct: 559 ITYNTLLDGITKDCNSEEALELLHGL-VSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFH 617

Query: 458 EMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
            + +LG+    +    ++  L K    D  +  F   +  G  P++
Sbjct: 618 IVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNE 663



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/369 (23%), Positives = 165/369 (44%), Gaps = 7/369 (1%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           F N + S    P +T+ Y   +K L   ++++ +E+L  EM+      + +T+  ++   
Sbjct: 268 FLNRLSSYGFQP-DTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFF 326

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            R  + + AI+  E+M   G   +    + +++   K G+V++         + G  PD 
Sbjct: 327 CRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDT 386

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           I+++ + K    +  ++  + +L+EM      PN V +NT +  + + G    A  L ++
Sbjct: 387 ISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQ 446

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M E G   +  T  AL+  +        ALEL+  M       + I Y TLL    +   
Sbjct: 447 MSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSM---PCKPNTITYTTLLTGLCNAER 503

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
           ++ A  L  +M   D C P+  ++  +++ +   G +D AIEL E+M E G   N++   
Sbjct: 504 LDAAAELLAEMLQKD-CAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYN 562

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ- 531
            L+  + K    ++ + +    +  GV PD      ++ V+S  +  E+  K+   +Q  
Sbjct: 563 TLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDL 622

Query: 532 -ANPKLVAF 539
              PK V +
Sbjct: 623 GMRPKAVIY 631



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 127/284 (44%), Gaps = 4/284 (1%)

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
           +D   Y+T++    R    D A      M    + PD  TY+ I+      G+V E LSL
Sbjct: 142 VDVFAYNTLVAGYCRYGQLDAARRLIASM---PVAPDAYTYTPIIRGLCDRGRVGEALSL 198

Query: 280 YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
            +  +  G +P  + ++VL +   +S  +     VL EM++ G  PN+V YN ++  M +
Sbjct: 199 LDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCR 258

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
            G+   AR   + +   G  PD  + T ++K    A+  +D  EL+  M E     + + 
Sbjct: 259 EGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVT 318

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           ++ L+      G+VE A ++ E M     C  +      ++N     G VD+A +    M
Sbjct: 319 FDMLVRFFCRGGMVERAIQVLEQMS-GHGCAANTTLCNIVINTICKQGRVDDAFQFLNNM 377

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
              G + + +  T +++ L +A R +D   +    + +   P++
Sbjct: 378 GSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNE 421



 Score = 85.9 bits (211), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 99/203 (48%), Gaps = 2/203 (0%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
           TI Y   +  L    +     +L  EM+  +   + +T++ +++   +  L DEAIE  E
Sbjct: 488 TITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVE 547

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS-VLGKMFGES 305
           +M + G  P+ +TY+ +LD   K    EE L L    V++G  PD + +S ++G +  E 
Sbjct: 548 QMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSRED 607

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
              + I+ +   ++ LG++P  V+YN +L A+ K      A   F  MV +G  P+E T 
Sbjct: 608 RVEEAIK-MFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTY 666

Query: 366 TALIKIYGKARWAKDALELWERM 388
             LI+      + K+  +L   +
Sbjct: 667 ITLIEGLANEDFLKETRDLLREL 689



 Score = 62.8 bits (151), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 73/152 (48%), Gaps = 2/152 (1%)

Query: 208 QLANEMVSNEIELDNITYSTIIT-CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
           +L  +M+ +    + ITY+T++    K CN  +EA+E    +   G+ PD VTYS+I+ V
Sbjct: 544 ELVEQMMEHGCTPNLITYNTLLDGITKDCN-SEEALELLHGLVSNGVSPDIVTYSSIIGV 602

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
            ++  +VEE + ++      G +P  + ++ +     +  + DG       M S G  PN
Sbjct: 603 LSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPN 662

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
            + Y TL+E +         R L  E+   G+
Sbjct: 663 ELTYITLIEGLANEDFLKETRDLLRELCSRGV 694



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 75/331 (22%), Positives = 123/331 (37%), Gaps = 48/331 (14%)

Query: 279 LYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMG 338
           L +R  + G  PD    + L +     G       VL+  +  G   ++  YNTL+    
Sbjct: 96  LVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYC 155

Query: 339 KAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFI 398
           + G+   AR L   M    + PD  T T +I+                            
Sbjct: 156 RYGQLDAARRLIASM---PVAPDAYTYTPIIR---------------------------- 184

Query: 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458
                  +C D G V EA  L +DM L   C+P   +YT +L           A+E+ +E
Sbjct: 185 ------GLC-DRGRVGEALSLLDDM-LHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDE 236

Query: 459 MSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCET 518
           M   G   N++    +I  + +  R+DD           G +PD      +L  +   + 
Sbjct: 237 MRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKR 296

Query: 519 SEDVGKVITCLQQAN--PKLVAFLNLIEDNSTGFENIKEEFRNVIKDTE---VDARRPFC 573
            EDV ++   + + N  P  V F  L+     G   + E    V++        A    C
Sbjct: 297 WEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRG--GMVERAIQVLEQMSGHGCAANTTLC 354

Query: 574 NCLID-ICRNRNLNERAHELLYLGTLYGLYP 603
           N +I+ IC+   +++    L  +G+ YG  P
Sbjct: 355 NIVINTICKQGRVDDAFQFLNNMGS-YGCSP 384


>gi|115475728|ref|NP_001061460.1| Os08g0290000 [Oryza sativa Japonica Group]
 gi|38175588|dbj|BAD01297.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|38175668|dbj|BAD01373.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113623429|dbj|BAF23374.1| Os08g0290000 [Oryza sativa Japonica Group]
 gi|125602875|gb|EAZ42200.1| hypothetical protein OsJ_26764 [Oryza sativa Japonica Group]
          Length = 806

 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 134/274 (48%), Gaps = 1/274 (0%)

Query: 191 NVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYK 250
           N  +  L  G+  +   ++   M++  IELD+ITY+ +I    + +  +EAI+    M +
Sbjct: 471 NALIHGLCEGKYMKEATKVIQTMLNKGIELDSITYNIMIRGCCKDSKMEEAIKLHGDMTR 530

Query: 251 TGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDG 310
            G  PD  T++ +L  Y   GK+EE   L ++    G +PD +++  +     ++ D   
Sbjct: 531 RGFKPDLFTFNTLLHAYCNLGKMEETFHLLDQMKTEGLQPDIVSYGTIIDGHCKAKDIRK 590

Query: 311 IRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK 370
            +  L E+   G++PN+ +YN L+   G+ G    A    + M  +G+ P   T  +L+ 
Sbjct: 591 AKEYLTELMDRGLKPNVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQPTNVTYGSLMY 650

Query: 371 IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCK 430
               A   ++A  ++ + REN   +  I Y  ++     +G + EA   FE+M+ S    
Sbjct: 651 WMCHAGLVEEAKTIFSQARENNVDLGVIGYTIMIQGYCKLGKMVEAVAYFEEMR-SRGIS 709

Query: 431 PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
           P+  +YT ++  Y   GN + A +LF+EM   GV
Sbjct: 710 PNKLTYTTLMYAYSKSGNSEEASKLFDEMVGSGV 743



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 137/285 (48%), Gaps = 2/285 (0%)

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           EA +  + M   G+  D +TY+ ++    K  K+EE + L+      G+KPD   F+ L 
Sbjct: 485 EATKVIQTMLNKGIELDSITYNIMIRGCCKDSKMEEAIKLHGDMTRRGFKPDLFTFNTLL 544

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
             +   G  +   ++L +MK+ G+QP++V Y T+++   KA     A+    E+++ GL 
Sbjct: 545 HAYCNLGKMEETFHLLDQMKTEGLQPDIVSYGTIIDGHCKAKDIRKAKEYLTELMDRGLK 604

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
           P+     ALI  YG+      A++  E M+ N      + Y +L+      GLVEEA+ +
Sbjct: 605 PNVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQPTNVTYGSLMYWMCHAGLVEEAKTI 664

Query: 420 FEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479
           F   +  +        YT M+  Y   G +  A+  FEEM   G++ N +  T L+    
Sbjct: 665 FSQAR-ENNVDLGVIGYTIMIQGYCKLGKMVEAVAYFEEMRSRGISPNKLTYTTLMYAYS 723

Query: 480 KARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCET-SEDVG 523
           K+   ++  ++F   +  GV PD+   G L++  S   +  +D+G
Sbjct: 724 KSGNSEEASKLFDEMVGSGVIPDNITYGTLIARCSEVNSLDKDIG 768



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 84/324 (25%), Positives = 146/324 (45%), Gaps = 23/324 (7%)

Query: 191 NVTMKSLRFGRQFQLIEQLANEMV-SNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           N  +++L    Q     ++ +EM  S  + L+  +Y+ +I    +    D   E    ++
Sbjct: 189 NAFLEALVRAGQLDAAREVFDEMRESRNVALNEYSYTAMIKALCKAGKVDAGFEMLAELW 248

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL------GKMFG 303
           + GL P  VTY+ ++D   KSG+VEE   L  R    G  P  + F +L      G+ FG
Sbjct: 249 RAGLQPTVVTYNVLMDALCKSGRVEEAFRLKGRMEQGGMTPSVVTFGILINGLARGERFG 308

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
           E G       VLQEM+ LGV PN V+YN L+    + G    A  LFDEMV   + P   
Sbjct: 309 EVG------IVLQEMEQLGVSPNEVIYNELIGWHCRKGHCSQALRLFDEMVLKKMKPTAV 362

Query: 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
           T      +  KA   +  +E  ER+ E+   +   ++  L N      L++   RL   +
Sbjct: 363 TY----NLIAKALCKEGEMERAERILEDMLSIGMTVHCGLFNTVVAW-LLQRTRRLESVV 417

Query: 424 KLSDY-----CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL 478
            +++       +P++   TA +     GG    A+ ++ +    G+ +N+     LI  L
Sbjct: 418 SITNEMVTRGMRPNDPLMTACMRELCKGGKHQEAVGIWFKTLNKGLGVNLATSNALIHGL 477

Query: 479 GKARRIDDLVRVFGVSIDRGVKPD 502
            + + + +  +V    +++G++ D
Sbjct: 478 CEGKYMKEATKVIQTMLNKGIELD 501



 Score = 98.2 bits (243), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/352 (21%), Positives = 157/352 (44%), Gaps = 37/352 (10%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
            + YNV M +L    + +   +L   M    +    +T+  +I    R   F E     +
Sbjct: 256 VVTYNVLMDALCKSGRVEEAFRLKGRMEQGGMTPSVVTFGILINGLARGERFGEVGIVLQ 315

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
            M + G+ P+EV Y+ ++  + + G   + L L++  V    KP  + ++++ K   + G
Sbjct: 316 EMEQLGVSPNEVIYNELIGWHCRKGHCSQALRLFDEMVLKKMKPTAVTYNLIAKALCKEG 375

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLE-AMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           + +    +L++M S+G+  +  ++NT++   + +  +     S+ +EMV  G+ P++  +
Sbjct: 376 EMERAERILEDMLSIGMTVHCGLFNTVVAWLLQRTRRLESVVSITNEMVTRGMRPNDPLM 435

Query: 366 TALIK---------------------------------IYG--KARWAKDALELWERMRE 390
           TA ++                                 I+G  + ++ K+A ++ + M  
Sbjct: 436 TACMRELCKGGKHQEAVGIWFKTLNKGLGVNLATSNALIHGLCEGKYMKEATKVIQTMLN 495

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
               +D I YN ++  C     +EEA +L  DM    + KPD +++  +L+ Y + G ++
Sbjct: 496 KGIELDSITYNIMIRGCCKDSKMEEAIKLHGDMTRRGF-KPDLFTFNTLLHAYCNLGKME 554

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
               L ++M   G+  +++    +I    KA+ I          +DRG+KP+
Sbjct: 555 ETFHLLDQMKTEGLQPDIVSYGTIIDGHCKAKDIRKAKEYLTELMDRGLKPN 606



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/278 (25%), Positives = 131/278 (47%), Gaps = 5/278 (1%)

Query: 185 METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNL--FDEAI 242
           +++I YN+ ++      + +   +L  +M     + D  T++T++     CNL   +E  
Sbjct: 500 LDSITYNIMIRGCCKDSKMEEAIKLHGDMTRRGFKPDLFTFNTLLHA--YCNLGKMEETF 557

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
              ++M   GL PD V+Y  I+D + K+  + +        +  G KP+   ++ L   +
Sbjct: 558 HLLDQMKTEGLQPDIVSYGTIIDGHCKAKDIRKAKEYLTELMDRGLKPNVFIYNALIGGY 617

Query: 303 GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
           G +GD  G    ++ MKS G+QP  V Y +L+  M  AG    A+++F +  E+ +    
Sbjct: 618 GRNGDISGAIDAVETMKSNGIQPTNVTYGSLMYWMCHAGLVEEAKTIFSQARENNVDLGV 677

Query: 363 KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED 422
              T +I+ Y K     +A+  +E MR      + + Y TL+   +  G  EEA +LF++
Sbjct: 678 IGYTIMIQGYCKLGKMVEAVAYFEEMRSRGISPNKLTYTTLMYAYSKSGNSEEASKLFDE 737

Query: 423 MKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           M  S    PDN +Y  ++       ++D  I    E+S
Sbjct: 738 MVGSGVI-PDNITYGTLIARCSEVNSLDKDIGHTAELS 774



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 83/185 (44%), Gaps = 2/185 (1%)

Query: 318 MKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES-GLTPDEKTLTALIKIYGKAR 376
           + S G  P++   N  LEA+ +AG+   AR +FDEM ES  +  +E + TA+IK   KA 
Sbjct: 176 LSSRGAPPSIKTCNAFLEALVRAGQLDAAREVFDEMRESRNVALNEYSYTAMIKALCKAG 235

Query: 377 WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY 436
                 E+   +         + YN L++     G VEEA RL   M+      P   ++
Sbjct: 236 KVDAGFEMLAELWRAGLQPTVVTYNVLMDALCKSGRVEEAFRLKGRMEQGGM-TPSVVTF 294

Query: 437 TAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496
             ++N    G        + +EM +LGV+ N +    LI    +       +R+F   + 
Sbjct: 295 GILINGLARGERFGEVGIVLQEMEQLGVSPNEVIYNELIGWHCRKGHCSQALRLFDEMVL 354

Query: 497 RGVKP 501
           + +KP
Sbjct: 355 KKMKP 359



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 68/145 (46%), Gaps = 2/145 (1%)

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           N  L      G ++ A  +F++M+ S     + YSYTAM+      G VD   E+  E+ 
Sbjct: 189 NAFLEALVRAGQLDAAREVFDEMRESRNVALNEYSYTAMIKALCKAGKVDAGFEMLAELW 248

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSE 520
             G+   V+    L+  L K+ R+++  R+ G     G+ P     G L++ ++  E   
Sbjct: 249 RAGLQPTVVTYNVLMDALCKSGRVEEAFRLKGRMEQGGMTPSVVTFGILINGLARGERFG 308

Query: 521 DVGKVITCLQQ--ANPKLVAFLNLI 543
           +VG V+  ++Q   +P  V +  LI
Sbjct: 309 EVGIVLQEMEQLGVSPNEVIYNELI 333


>gi|326501502|dbj|BAK02540.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 673

 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 87/324 (26%), Positives = 140/324 (43%), Gaps = 36/324 (11%)

Query: 214 VSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKV 273
           ++ EI+     Y+ ++    +      A    + M + G+ PDE TYS ++D Y ++G+ 
Sbjct: 296 LAGEIKPRTRAYNALLKGYVKIGSLKNAEHVLDEMSECGVAPDEATYSLLVDAYTRAGRW 355

Query: 274 EEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTL 333
           E    L +   A G KP    FS +   F + GD+     VL+EM + GVQP+   YN +
Sbjct: 356 ESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMHASGVQPDRHFYNVM 415

Query: 334 LEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKW 393
           ++  GK    G A  +F+ M   G+ PD  T   LI  + K      A+EL++ MRE+  
Sbjct: 416 IDTFGKYNCLGHAMDVFNRMRGEGIEPDVVTWNTLIDAHCKGGRHDCAMELFKEMRESNC 475

Query: 394 PMDFILYNTLLNMCA----------------DIGLV-------------------EEAER 418
           P     YN ++N+                  + GLV                   +EA  
Sbjct: 476 PPGTTTYNIMINLLGEQERWVGVETMMSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAID 535

Query: 419 LFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL 478
             E MK +D  KP    Y A++N Y   G  D+A+ + + M   G+  + +    LI   
Sbjct: 536 CIEAMK-ADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNSLINAF 594

Query: 479 GKARRIDDLVRVFGVSIDRGVKPD 502
           G+ RR+ +   V     +   +PD
Sbjct: 595 GEDRRVVEAFSVLQFMKENDFRPD 618



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 141/299 (47%), Gaps = 2/299 (0%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           W+ +      +++  + P   +F  + +   R    +Q    +  EM ++ ++ D   Y+
Sbjct: 355 WESARILLKEMEADGVKPSSYVFSRI-LAGFRDRGDWQKAFAVLREMHASGVQPDRHFYN 413

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
            +I    + N    A++ F RM   G+ PD VT++ ++D + K G+ +  + L++    S
Sbjct: 414 VMIDTFGKYNCLGHAMDVFNRMRGEGIEPDVVTWNTLIDAHCKGGRHDCAMELFKEMRES 473

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
              P    ++++  + GE   + G+  ++ EMK  G+ PN++ Y TL++  G++G+   A
Sbjct: 474 NCPPGTTTYNIMINLLGEQERWVGVETMMSEMKEQGLVPNIITYTTLVDVYGRSGRYKEA 533

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
               + M   GL P      AL+  Y +   A  AL + + MR +      ++ N+L+N 
Sbjct: 534 IDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNSLINA 593

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
             +   V EA  + + MK +D+ +PD  +YT ++         D    ++EEM   G A
Sbjct: 594 FGEDRRVVEAFSVLQFMKENDF-RPDVITYTTLMKALIRVEQFDKVPVIYEEMITSGCA 651



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 92/393 (23%), Positives = 164/393 (41%), Gaps = 41/393 (10%)

Query: 177 IKSQNLFPMETIFYNVTMKSLRFGRQ---FQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           I+  N  P +   Y+  + SL   R      ++E+L  ++  + +E D   +S +I+   
Sbjct: 186 IREHNFLP-DLASYSHLLASLLNTRDPPDAAILERLLGDLRDSRLEPDAPLFSDLISAFA 244

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY-ERGVASGWKPDP 292
           R  L D A+E        GL P     +A++     +G+V E  +L+ E  +A   KP  
Sbjct: 245 RAALPDAALELLASAQAIGLTPRSNAVTALISALGIAGRVPEAEALFLEFFLAGEIKPRT 304

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
            A++ L K + + G      +VL EM   GV P+   Y+ L++A  +AG+   AR L  E
Sbjct: 305 RAYNALLKGYVKIGSLKNAEHVLDEMSECGVAPDEATYSLLVDAYTRAGRWESARILLKE 364

Query: 353 M-----------------------------------VESGLTPDEKTLTALIKIYGKARW 377
           M                                     SG+ PD      +I  +GK   
Sbjct: 365 MEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMHASGVQPDRHFYNVMIDTFGKYNC 424

Query: 378 AKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYT 437
              A++++ RMR      D + +NTL++     G  + A  LF++M+ S+ C P   +Y 
Sbjct: 425 LGHAMDVFNRMRGEGIEPDVVTWNTLIDAHCKGGRHDCAMELFKEMRESN-CPPGTTTYN 483

Query: 438 AMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDR 497
            M+N+ G          +  EM E G+  N++  T L+   G++ R  + +         
Sbjct: 484 IMINLLGEQERWVGVETMMSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKAD 543

Query: 498 GVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQ 530
           G+KP   +   L++  +    ++    V+  ++
Sbjct: 544 GLKPSPTMYHALVNAYAQRGLADHALNVVKAMR 576



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 93/196 (47%), Gaps = 1/196 (0%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F  ++  N  P  T  YN+ +  L    ++  +E + +EM    +  + ITY+T++   
Sbjct: 466 LFKEMRESNC-PPGTTTYNIMINLLGEQERWVGVETMMSEMKEQGLVPNIITYTTLVDVY 524

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            R   + EAI+  E M   GL P    Y A+++ YA+ G  +  L++ +   A G +   
Sbjct: 525 GRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLEAST 584

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           +  + L   FGE         VLQ MK    +P+++ Y TL++A+ +  +      +++E
Sbjct: 585 VVLNSLINAFGEDRRVVEAFSVLQFMKENDFRPDVITYTTLMKALIRVEQFDKVPVIYEE 644

Query: 353 MVESGLTPDEKTLTAL 368
           M+ SG  PD K    L
Sbjct: 645 MITSGCAPDRKARAML 660


>gi|410110111|gb|AFV61135.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           duartei]
          Length = 381

 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 83/366 (22%), Positives = 170/366 (46%), Gaps = 6/366 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K     P + + YN  +      + F+    L  EM +  +  +  +YS
Sbjct: 20  YSKAISIFSRLKRLGFXP-DLVAYNAMINVFGKAKLFREARSLIGEMKTAGVMPNTTSYS 78

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY + G  +E   L+      
Sbjct: 79  TLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 138

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   ++ N+V YN+++   GK  +   A
Sbjct: 139 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKA 198

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R +   +D IL+ T++  
Sbjct: 199 NNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAXLFQKLRSSGVEIDQILFQTMIVA 258

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K     +PDN      ++I    G ++ A  +F +  + G   
Sbjct: 259 YERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQXIDAGEVK 313

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           ++     +I  L K ++  ++V VF      G  PD  +   +L+     +  +    V 
Sbjct: 314 DITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVY 373

Query: 527 TCLQQA 532
             +Q+ 
Sbjct: 374 MEMQEV 379



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 133/261 (50%), Gaps = 1/261 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D + YS +I  +++   + +AI  F R+ + G  PD V Y+A+++V+ K+    E  SL 
Sbjct: 3   DLVLYSNLIELSRKLCDYSKAISIFSRLKRLGFXPDLVAYNAMINVFGKAKLFREARSLI 62

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
                +G  P+  ++S L  M+ E+  +     V  EM+ +    +L   N +++  G+ 
Sbjct: 63  GEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQL 122

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G    A  LF  M + G+ P+  +   L+++YG A    +A+ L+  M+      + + Y
Sbjct: 123 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 182

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           N+++ +       E+A  L ++M+ S   +P++ +Y+ +++I+G  G +D A  LF+++ 
Sbjct: 183 NSMMMIYGKTLEHEKANNLIQEMQ-SRGIEPNSITYSTIISIWGKVGKLDRAAXLFQKLR 241

Query: 461 ELGVAINVMGCTCLIQCLGKA 481
             GV I+ +    +I    +A
Sbjct: 242 SSGVEIDQILFQTMIVAYERA 262



 Score = 86.3 bits (212), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 89/374 (23%), Positives = 165/374 (44%), Gaps = 43/374 (11%)

Query: 127 FARKLNDCDNTEEAFLRAITEIPHQP--TRENALL-ILNSLKFWQKSYFFFNWIKSQNLF 183
            +RKL D       F R +  +   P     NA++ +    K ++++      +K+  + 
Sbjct: 13  LSRKLCDYSKAISIFSR-LKRLGFXPDLVAYNAMINVFGKAKLFREARSLIGEMKTAGVM 71

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           P  T  Y+  +      ++F     + +EM   +  LD  T + +I    +  +  EA +
Sbjct: 72  P-NTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADK 130

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
            F  M K G+ P+ V+Y+ +L VY  +    E + L+        + + + ++ +  ++G
Sbjct: 131 LFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYG 190

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
           ++ +++    ++QEM+S G++PN + Y+T++   GK GK   A  LF ++  SG+  D+ 
Sbjct: 191 KTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAXLFQKLRSSGVEIDQI 250

Query: 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLF--- 420
               +I  Y +A     A  L   + E K P D I  +T +++ A  G +EEA  +F   
Sbjct: 251 LFQTMIVAYERAGLVAHAKRL---LHELKRP-DNIPRDTAIHILAGAGRIEEATYVFRQX 306

Query: 421 ------EDMK--------LSDYCK-----------------PDNYSYTAMLNIYGSGGNV 449
                 +D+         LS Y K                 PD+     +LN YG     
Sbjct: 307 IDAGEVKDITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEF 366

Query: 450 DNAIELFEEMSELG 463
           D A +++ EM E+G
Sbjct: 367 DKANDVYMEMQEVG 380



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 68/153 (44%), Gaps = 1/153 (0%)

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
           A+ ++ R++   +  D + YN ++N+     L  EA  L  +MK +    P+  SY+ +L
Sbjct: 23  AISIFSRLKRLGFXPDLVAYNAMINVFGKAKLFREARSLIGEMKTAG-VMPNTTSYSTLL 81

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
            +Y        A+ +F EM E+   +++  C  +I   G+     +  ++F      G++
Sbjct: 82  TMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 141

Query: 501 PDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN 533
           P+      LL V    E   +   +   +Q+ N
Sbjct: 142 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKN 174


>gi|356529489|ref|XP_003533323.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 550

 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 101/373 (27%), Positives = 154/373 (41%), Gaps = 38/373 (10%)

Query: 183 FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
           + +  I     MK L    + +   +  + +V+    LD +TY T+I    +  L  EA 
Sbjct: 144 YQLNAITLTTIMKGLCINGEVRKALEFHDSVVAQGFLLDEVTYGTLINGLCKIGLTREAF 203

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
           E   +M    + P+ V Y+ I+D   K G V E   LY   V  G  PD   ++ L   F
Sbjct: 204 ELLHKMEGQVVRPNVVIYNMIVDGLCKDGLVTEARDLYSDVVGRGIDPDVFTYTCLIHGF 263

Query: 303 GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG-----------------KPGL 345
              G +  +  +L +M    V  N+  YN L++A+ K G                 +P L
Sbjct: 264 CGLGQWREVTRLLCDMVDRNVNLNVYTYNILIDALCKKGMLGKAHDMRNLMIERGQRPDL 323

Query: 346 ------------------ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
                             AR LFD   E G+TPD  +   LI  Y K     +AL L+ +
Sbjct: 324 VTFNTLMSGYCLYNDVVEARKLFDTFAECGITPDVWSYNILIIGYCKNNRIDEALSLFNK 383

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           M   K   + + Y++L++     G +  A  LF  +       P+  +Y  ML+      
Sbjct: 384 MNYKKLAPNIVTYSSLIDGLCKSGRISYAWELFSAIH-DGGPSPNVITYNIMLDALCKIQ 442

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCG 507
            VD AIELF  M E G+  NV     LI    K++RID+ + +F     R + PD     
Sbjct: 443 LVDKAIELFNLMFERGLTPNVSSYNILINGYCKSKRIDEAMNLFEEMHRRNLVPDSVTYN 502

Query: 508 CLLSVVSLCETSE 520
           CL+    LC++  
Sbjct: 503 CLID--GLCKSGR 513



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 133/283 (46%), Gaps = 1/283 (0%)

Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS 261
           Q++ + +L  +MV   + L+  TY+ +I    +  +  +A +    M + G  PD VT++
Sbjct: 268 QWREVTRLLCDMVDRNVNLNVYTYNILIDALCKKGMLGKAHDMRNLMIERGQRPDLVTFN 327

Query: 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
            ++  Y     V E   L++     G  PD  ++++L   + ++   D    +  +M   
Sbjct: 328 TLMSGYCLYNDVVEARKLFDTFAECGITPDVWSYNILIIGYCKNNRIDEALSLFNKMNYK 387

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
            + PN+V Y++L++ + K+G+   A  LF  + + G +P+  T   ++    K +    A
Sbjct: 388 KLAPNIVTYSSLIDGLCKSGRISYAWELFSAIHDGGPSPNVITYNIMLDALCKIQLVDKA 447

Query: 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
           +EL+  M E     +   YN L+N       ++EA  LFE+M   +   PD+ +Y  +++
Sbjct: 448 IELFNLMFERGLTPNVSSYNILINGYCKSKRIDEAMNLFEEMHRRNLV-PDSVTYNCLID 506

Query: 442 IYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484
                G + +A ELF  M + G  ++V+    L     K + +
Sbjct: 507 GLCKSGRISHAWELFNVMHDGGPPVDVITYNILFDAFSKIQHV 549



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 114/265 (43%), Gaps = 3/265 (1%)

Query: 239 DEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
           D+A+  F R+     +P  V ++ IL    K       +SL ++    G  P  +  S+L
Sbjct: 60  DDAVALFTRLITMHPLPSVVEFNMILGSIVKMKHYPTAISLSKQMGLRGITPSIVTLSIL 119

Query: 299 GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
              +   G       VL  +   G Q N +   T+++ +   G+   A    D +V  G 
Sbjct: 120 INCYCHLGHMGFAFSVLGMVLKRGYQLNAITLTTIMKGLCINGEVRKALEFHDSVVAQGF 179

Query: 359 TPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN-MCADIGLVEEAE 417
             DE T   LI    K    ++A EL  +M       + ++YN +++ +C D GLV EA 
Sbjct: 180 LLDEVTYGTLINGLCKIGLTREAFELLHKMEGQVVRPNVVIYNMIVDGLCKD-GLVTEAR 238

Query: 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
            L+ D+ +     PD ++YT +++ +   G       L  +M +  V +NV     LI  
Sbjct: 239 DLYSDV-VGRGIDPDVFTYTCLIHGFCGLGQWREVTRLLCDMVDRNVNLNVYTYNILIDA 297

Query: 478 LGKARRIDDLVRVFGVSIDRGVKPD 502
           L K   +     +  + I+RG +PD
Sbjct: 298 LCKKGMLGKAHDMRNLMIERGQRPD 322



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 52/247 (21%), Positives = 99/247 (40%), Gaps = 44/247 (17%)

Query: 269 KSG--KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
           KSG   +++ ++L+ R +     P  + F+++     +   Y     + ++M   G+ P+
Sbjct: 53  KSGFDAIDDAVALFTRLITMHPLPSVVEFNMILGSIVKMKHYPTAISLSKQMGLRGITPS 112

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK---IYGKARWAKDALE 383
           +V  + L+      G  G A S+   +++ G   +  TLT ++K   I G+ R    ALE
Sbjct: 113 IVTLSILINCYCHLGHMGFAFSVLGMVLKRGYQLNAITLTTIMKGLCINGEVR---KALE 169

Query: 384 LWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIY 443
             + +    + +D + Y TL+N    IGL  EA  L   M+     +P+   Y  +++  
Sbjct: 170 FHDSVVAQGFLLDEVTYGTLINGLCKIGLTREAFELLHKME-GQVVRPNVVIYNMIVDGL 228

Query: 444 GSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
              G V  A +L+ ++                                   + RG+ PD 
Sbjct: 229 CKDGLVTEARDLYSDV-----------------------------------VGRGIDPDV 253

Query: 504 RLCGCLL 510
               CL+
Sbjct: 254 FTYTCLI 260


>gi|68566156|sp|P0C043.1|PP318_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At4g17915
          Length = 463

 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 89/329 (27%), Positives = 151/329 (45%), Gaps = 41/329 (12%)

Query: 202 QFQLIEQ---LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEV 258
           +F  IE+   +   M    I  D  TY+++I  A R  + D  +  F+ M + G+ PD  
Sbjct: 60  RFVGIEEAYAVTRRMRDAGIRPDVATYNSLIAGAARRLMLDHVLYLFDEMLEWGIYPDLW 119

Query: 259 TYSAILDVYAKSGKVEEVLS-LYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQE 317
           +Y+ ++  Y K GK EE    LY+    +G  P P  ++VL     + G  D    + +E
Sbjct: 120 SYNTLMCCYFKLGKHEEAFRVLYKDLQLAGLNPGPDTYNVLLDALCKCGYIDNALELFKE 179

Query: 318 MKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARW 377
           M+S   +P L+ YN L+  + K+ + G A+ +  E+ +SG TP+  T T ++K+Y K R 
Sbjct: 180 MQSR-FKPELMTYNILINGLCKSRRVGTAKWMLTELKKSGYTPNAVTYTTILKLYFKTRR 238

Query: 378 AKDALELWERMRENKWPMD-----------------------------------FILYNT 402
            +  L+L+  M+   +  D                                    + YNT
Sbjct: 239 IRRGLQLFLEMKREGYTYDGYAYFAVVSALIKTGRTKEAYEYMQELVRKGRRHDIVSYNT 298

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
           LLN+    G ++  + L  +++     K D Y++T ++N     G    A E F  M E+
Sbjct: 299 LLNLYFKDGNLDAVDDLLGEIERRGM-KADEYTHTIIVNGLLRTGQTRRAEEHFVSMGEM 357

Query: 463 GVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           G+ +N++ C CL+  L KA  +D  +R F
Sbjct: 358 GIGLNLVTCNCLVDGLCKAGHVDRAMRYF 386



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 98/219 (44%), Gaps = 5/219 (2%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           +TY+ +I    +      A      + K+G  P+ VTY+ IL +Y K+ ++   L L+  
Sbjct: 189 MTYNILINGLCKSRRVGTAKWMLTELKKSGYTPNAVTYTTILKLYFKTRRIRRGLQLFLE 248

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
               G+  D  A+  +     ++G        +QE+   G + ++V YNTLL    K G 
Sbjct: 249 MKREGYTYDGYAYFAVVSALIKTGRTKEAYEYMQELVRKGRRHDIVSYNTLLNLYFKDGN 308

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
                 L  E+   G+  DE T T ++    +    + A E +  M E    ++ +  N 
Sbjct: 309 LDAVDDLLGEIERRGMKADEYTHTIIVNGLLRTGQTRRAEEHFVSMGEMGIGLNLVTCNC 368

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
           L++     G V+ A R FE M++      D Y+YT++++
Sbjct: 369 LVDGLCKAGHVDRAMRYFESMEV-----KDEYTYTSVVH 402



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/234 (20%), Positives = 103/234 (44%), Gaps = 3/234 (1%)

Query: 180 QNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFD 239
           Q+ F  E + YN+ +  L   R+    + +  E+  +    + +TY+TI+    +     
Sbjct: 181 QSRFKPELMTYNILINGLCKSRRVGTAKWMLTELKKSGYTPNAVTYTTILKLYFKTRRIR 240

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
             ++ F  M + G   D   Y A++    K+G+ +E     +  V  G + D ++++ L 
Sbjct: 241 RGLQLFLEMKREGYTYDGYAYFAVVSALIKTGRTKEAYEYMQELVRKGRRHDIVSYNTLL 300

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
            ++ + G+ D +  +L E++  G++ +   +  ++  + + G+   A   F  M E G+ 
Sbjct: 301 NLYFKDGNLDAVDDLLGEIERRGMKADEYTHTIIVNGLLRTGQTRRAEEHFVSMGEMGIG 360

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
            +  T   L+    KA     A+  +E M       ++   + + N+C D+  V
Sbjct: 361 LNLVTCNCLVDGLCKAGHVDRAMRYFESMEVKD---EYTYTSVVHNLCKDMRFV 411


>gi|62320562|dbj|BAD95174.1| hypothetical protein [Arabidopsis thaliana]
          Length = 468

 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 151/288 (52%), Gaps = 4/288 (1%)

Query: 206 IEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF-ERMYKTGLMPDEVTYSAIL 264
           + QL +EM+ + +  D  +Y+T+++C  +     EA +   E ++  GL+P   TY+ +L
Sbjct: 102 VLQLFDEMLHSGLSPDMWSYNTLMSCYFKLGRHGEAFKILHEDIHLAGLVPGIDTYNILL 161

Query: 265 DVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQ 324
           D   KSG  +  + L++  + S  KP+ + +++L     +S     + ++++E+K  G  
Sbjct: 162 DALCKSGHTDNAIELFKH-LKSRVKPELMTYNILINGLCKSRRVGSVDWMMRELKKSGYT 220

Query: 325 PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALE- 383
           PN V Y T+L+   K  +      LF +M + G T D     A++    K   A++A E 
Sbjct: 221 PNAVTYTTMLKMYFKTKRIEKGLQLFLKMKKEGYTFDGFANCAVVSALIKTGRAEEAYEC 280

Query: 384 LWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIY 443
           + E +R      D + YNTLLN+    G ++  + L E++++    KPD+Y++T ++N  
Sbjct: 281 MHELVRSGTRSQDIVSYNTLLNLYFKDGNLDAVDDLLEEIEMKGL-KPDDYTHTIIVNGL 339

Query: 444 GSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
            + GN   A +    + E+G+  +V+ C CLI  L KA  +D  +R+F
Sbjct: 340 LNIGNTGGAEKHLACIGEMGMQPSVVTCNCLIDGLCKAGHVDRAMRLF 387



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 81/184 (44%), Gaps = 9/184 (4%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
           T    +  K+ R  +  QL  ++  E  +     D      +++   +    +EA E   
Sbjct: 227 TTMLKMYFKTKRIEKGLQLFLKMKKEGYT----FDGFANCAVVSALIKTGRAEEAYECMH 282

Query: 247 RMYKTGLMP-DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
            + ++G    D V+Y+ +L++Y K G ++ V  L E     G KPD    +++       
Sbjct: 283 ELVRSGTRSQDIVSYNTLLNLYFKDGNLDAVDDLLEEIEMKGLKPDDYTHTIIVNGLLNI 342

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G+  G    L  +  +G+QP++V  N L++ + KAG    A  LF  M       DE T 
Sbjct: 343 GNTGGAEKHLACIGEMGMQPSVVTCNCLIDGLCKAGHVDRAMRLFASME----VRDEFTY 398

Query: 366 TALI 369
           T+++
Sbjct: 399 TSVV 402


>gi|18422700|ref|NP_568665.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635755|sp|Q56XR6.2|PP421_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g46680
 gi|332008030|gb|AED95413.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 468

 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 151/288 (52%), Gaps = 4/288 (1%)

Query: 206 IEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF-ERMYKTGLMPDEVTYSAIL 264
           + QL +EM+ + +  D  +Y+T+++C  +     EA +   E ++  GL+P   TY+ +L
Sbjct: 102 VLQLFDEMLHSGLSPDMWSYNTLMSCYFKLGRHGEAFKILHEDIHLAGLVPGIDTYNILL 161

Query: 265 DVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQ 324
           D   KSG  +  + L++  + S  KP+ + +++L     +S     + ++++E+K  G  
Sbjct: 162 DALCKSGHTDNAIELFKH-LKSRVKPELMTYNILINGLCKSRRVGSVDWMMRELKKSGYT 220

Query: 325 PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALE- 383
           PN V Y T+L+   K  +      LF +M + G T D     A++    K   A++A E 
Sbjct: 221 PNAVTYTTMLKMYFKTKRIEKGLQLFLKMKKEGYTFDGFANCAVVSALIKTGRAEEAYEC 280

Query: 384 LWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIY 443
           + E +R      D + YNTLLN+    G ++  + L E++++    KPD+Y++T ++N  
Sbjct: 281 MHELVRSGTRSQDIVSYNTLLNLYFKDGNLDAVDDLLEEIEMKGL-KPDDYTHTIIVNGL 339

Query: 444 GSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
            + GN   A +    + E+G+  +V+ C CLI  L KA  +D  +R+F
Sbjct: 340 LNIGNTGGAEKHLACIGEMGMQPSVVTCNCLIDGLCKAGHVDRAMRLF 387



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 81/184 (44%), Gaps = 9/184 (4%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
           T    +  K+ R  +  QL  ++  E  +     D      +++   +    +EA E   
Sbjct: 227 TTMLKMYFKTKRIEKGLQLFLKMKKEGYT----FDGFANCAVVSALIKTGRAEEAYECMH 282

Query: 247 RMYKTGLMP-DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
            + ++G    D V+Y+ +L++Y K G ++ V  L E     G KPD    +++       
Sbjct: 283 ELVRSGTRSQDIVSYNTLLNLYFKDGNLDAVDDLLEEIEMKGLKPDDYTHTIIVNGLLNI 342

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G+  G    L  +  +G+QP++V  N L++ + KAG    A  LF  M       DE T 
Sbjct: 343 GNTGGAEKHLACIGEMGMQPSVVTCNCLIDGLCKAGHVDRAMRLFASME----VRDEFTY 398

Query: 366 TALI 369
           T+++
Sbjct: 399 TSVV 402


>gi|115475535|ref|NP_001061364.1| Os08g0248400 [Oryza sativa Japonica Group]
 gi|113623333|dbj|BAF23278.1| Os08g0248400, partial [Oryza sativa Japonica Group]
          Length = 440

 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 109/206 (52%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
           +EM+   I  D +TY+TI+    +    D+A++   RM K G+MPD +TY++I+  Y  S
Sbjct: 230 HEMLERGILPDVVTYNTIVAALCKAQAMDKAMDVLNRMVKNGVMPDCITYNSIVHGYCSS 289

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
           G+ +E + + E+  + G +PD + ++ L     ++G     R +L  M   G++PN++ Y
Sbjct: 290 GQSKEAIGILEKMCSDGVEPDAVTYTSLMDYLCKNGRCIEARKILDSMIKRGLKPNVITY 349

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
           +TLL      G     R L D MV +G+ PD    + LI    K +    A+ ++ +MR+
Sbjct: 350 STLLHGYATKGALVEMRDLLDLMVRNGIQPDRHVFSILICACTKHQNVDVAMFVFSKMRQ 409

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEA 416
            +   D + Y TL++     G V++A
Sbjct: 410 QRLTPDVVTYGTLIDGLCKSGRVDDA 435



 Score =  103 bits (256), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 131/268 (48%), Gaps = 7/268 (2%)

Query: 190 YNVTMKSL----RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           YN+ +K L    R     +L+  +A++    +   D ++YSTII    +    D+A   +
Sbjct: 172 YNILLKGLCHESRSQEALELLHMMADD--GGDCPPDVVSYSTIIDGLFKEGDSDKAYSTY 229

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
             M + G++PD VTY+ I+    K+  +++ + +  R V +G  PD I ++ +   +  S
Sbjct: 230 HEMLERGILPDVVTYNTIVAALCKAQAMDKAMDVLNRMVKNGVMPDCITYNSIVHGYCSS 289

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G       +L++M S GV+P+ V Y +L++ + K G+   AR + D M++ GL P+  T 
Sbjct: 290 GQSKEAIGILEKMCSDGVEPDAVTYTSLMDYLCKNGRCIEARKILDSMIKRGLKPNVITY 349

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
           + L+  Y       +  +L + M  N    D  +++ L+  C     V+ A  +F  M+ 
Sbjct: 350 STLLHGYATKGALVEMRDLLDLMVRNGIQPDRHVFSILICACTKHQNVDVAMFVFSKMR- 408

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAI 453
                PD  +Y  +++     G VD+A+
Sbjct: 409 QQRLTPDVVTYGTLIDGLCKSGRVDDAM 436



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 103/214 (48%), Gaps = 1/214 (0%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           K+Y  ++ +  + + P + + YN  + +L   +       + N MV N +  D ITY++I
Sbjct: 224 KAYSTYHEMLERGILP-DVVTYNTIVAALCKAQAMDKAMDVLNRMVKNGVMPDCITYNSI 282

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
           +          EAI   E+M   G+ PD VTY++++D   K+G+  E   + +  +  G 
Sbjct: 283 VHGYCSSGQSKEAIGILEKMCSDGVEPDAVTYTSLMDYLCKNGRCIEARKILDSMIKRGL 342

Query: 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348
           KP+ I +S L   +   G    +R +L  M   G+QP+  V++ L+ A  K     +A  
Sbjct: 343 KPNVITYSTLLHGYATKGALVEMRDLLDLMVRNGIQPDRHVFSILICACTKHQNVDVAMF 402

Query: 349 LFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382
           +F +M +  LTPD  T   LI    K+    DA+
Sbjct: 403 VFSKMRQQRLTPDVVTYGTLIDGLCKSGRVDDAM 436



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 71/329 (21%), Positives = 142/329 (43%), Gaps = 12/329 (3%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           TY  +I C  R    D        + K G   + + ++ +L       +    +++  R 
Sbjct: 100 TYGILIGCCCRAGRLDLGFAGLGNVIKKGYRVEPIIFTPLLKSLCAEKRTSNAMNIVLRR 159

Query: 284 VAS-GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG--VQPNLVVYNTLLEAMGKA 340
           +   G  P   ++++L K             +L  M   G    P++V Y+T+++ + K 
Sbjct: 160 MTELGCAPHVFSYNILLKGLCHESRSQEALELLHMMADDGGDCPPDVVSYSTIIDGLFKE 219

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G    A S + EM+E G+ PD  T   ++    KA+    A+++  RM +N    D I Y
Sbjct: 220 GDSDKAYSTYHEMLERGILPDVVTYNTIVAALCKAQAMDKAMDVLNRMVKNGVMPDCITY 279

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           N++++     G  +EA  + E M  SD  +PD  +YT++++     G    A ++ + M 
Sbjct: 280 NSIVHGYCSSGQSKEAIGILEKM-CSDGVEPDAVTYTSLMDYLCKNGRCIEARKILDSMI 338

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSE 520
           + G+  NV+  + L+        + ++  +  + +  G++PD  +   L+     C   +
Sbjct: 339 KRGLKPNVITYSTLLHGYATKGALVEMRDLLDLMVRNGIQPDRHVFSILICA---CTKHQ 395

Query: 521 DVGKVITCL-----QQANPKLVAFLNLIE 544
           +V   +        Q+  P +V +  LI+
Sbjct: 396 NVDVAMFVFSKMRQQRLTPDVVTYGTLID 424



 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 120/268 (44%), Gaps = 7/268 (2%)

Query: 241 AIEWFERMYKT---GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS- 296
           A+  F RM ++    + P   TY  ++    ++G+++   +     +  G++ +PI F+ 
Sbjct: 79  AVSGFNRMARSSDGAVTPTLHTYGILIGCCCRAGRLDLGFAGLGNVIKKGYRVEPIIFTP 138

Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356
           +L  +  E    + +  VL+ M  LG  P++  YN LL+ +    +   A  L   M + 
Sbjct: 139 LLKSLCAEKRTSNAMNIVLRRMTELGCAPHVFSYNILLKGLCHESRSQEALELLHMMADD 198

Query: 357 G--LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
           G    PD  + + +I    K   +  A   +  M E     D + YNT++        ++
Sbjct: 199 GGDCPPDVVSYSTIIDGLFKEGDSDKAYSTYHEMLERGILPDVVTYNTIVAALCKAQAMD 258

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
           +A  +   M + +   PD  +Y ++++ Y S G    AI + E+M   GV  + +  T L
Sbjct: 259 KAMDVLNRM-VKNGVMPDCITYNSIVHGYCSSGQSKEAIGILEKMCSDGVEPDAVTYTSL 317

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           +  L K  R  +  ++    I RG+KP+
Sbjct: 318 MDYLCKNGRCIEARKILDSMIKRGLKPN 345


>gi|410110079|gb|AFV61119.1| pentatricopeptide repeat-containing protein 123, partial [Junellia
           succulentifolia]
          Length = 382

 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 164/345 (47%), Gaps = 6/345 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K     P + + YN  +      + F+    L +EM +  +  +  +YS
Sbjct: 21  YSKAISIFSRLKRSGFMP-DLVAYNAMINVFGKAKLFRDARSLISEMRTAGVTPNTASYS 79

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY + G  +E   L+      
Sbjct: 80  TLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 139

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   ++ N+V YN+++   GK  +   A
Sbjct: 140 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKA 199

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R +   +D +LY T++  
Sbjct: 200 NNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVA 259

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K     +PDN      ++I    G ++ A  +F +  + G   
Sbjct: 260 YERAGLVAHAKRLLHELK-----RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGXVK 314

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
           ++     +I    K ++  ++V VF      G  PD  +   +L+
Sbjct: 315 DITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLN 359



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 130/247 (52%), Gaps = 1/247 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D + YS +I  +++   + +AI  F R+ ++G MPD V Y+A+++V+ K+    +  SL 
Sbjct: 4   DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFMPDLVAYNAMINVFGKAKLFRDARSLI 63

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
                +G  P+  ++S L  M+ E+  +     V  EM+ +    +L   N +++  G+ 
Sbjct: 64  SEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQL 123

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G    A  LF  M + G+ P+  +   L+++YG A    +A+ L+  M+      + + Y
Sbjct: 124 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 183

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           N+++ +       E+A  L ++M+ +   +P++ +Y+ +++I+G  G +D A  LF+++ 
Sbjct: 184 NSMMMIYGKTLEHEKANNLIQEMQ-NRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLR 242

Query: 461 ELGVAIN 467
             GV I+
Sbjct: 243 SSGVDID 249



 Score = 92.4 bits (228), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 109/222 (49%), Gaps = 1/222 (0%)

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
           D + +S L ++  +  DY     +   +K  G  P+LV YN ++   GKA     ARSL 
Sbjct: 4   DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFMPDLVAYNAMINVFGKAKLFRDARSLI 63

Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
            EM  +G+TP+  + + L+ +Y + +   +AL ++  MRE K  +D    N ++++   +
Sbjct: 64  SEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQL 123

Query: 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG 470
           G+ +EA++LF  M+     +P+  SY  +L +YG       AI LF  M    +  NV+ 
Sbjct: 124 GMAKEADKLFWGMRKMG-IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVT 182

Query: 471 CTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSV 512
              ++   GK    +    +     +RG++P+      ++S+
Sbjct: 183 YNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISI 224



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/238 (21%), Positives = 110/238 (46%), Gaps = 31/238 (13%)

Query: 218 IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL 277
           IE + ++Y+T++       LF EAI  F  M +  +  + VTY++++ +Y K+ + E+  
Sbjct: 141 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKAN 200

Query: 278 SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
           +L +     G +P+ I +S +  ++G+ G  D    + Q+++S GV  + V+Y T++ A 
Sbjct: 201 NLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAY 260

Query: 338 GKAGKPGLARSLFDEM-------------------------------VESGLTPDEKTLT 366
            +AG    A+ L  E+                               +++G   D     
Sbjct: 261 ERAGLVAHAKRLLHELKRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGXVKDITVFE 320

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
            +I ++ K +   + +E++++MR   +  D  +   +LN    +   ++A  ++ +M+
Sbjct: 321 RMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVYMEMQ 378



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 81/169 (47%), Gaps = 1/169 (0%)

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382
           V  +LV+Y+ L+E   K      A S+F  +  SG  PD     A+I ++GKA+  +DA 
Sbjct: 1   VPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFMPDLVAYNAMINVFGKAKLFRDAR 60

Query: 383 ELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNI 442
            L   MR      +   Y+TLL M  +     EA  +F +M+    C  D  +   M+++
Sbjct: 61  SLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMR-EIKCLLDLTTCNIMIDV 119

Query: 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           YG  G    A +LF  M ++G+  NV+    L++  G A    + + +F
Sbjct: 120 YGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLF 168



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/242 (21%), Positives = 105/242 (43%), Gaps = 5/242 (2%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           P+  +    L +    + + ++   F  ++ +N+     + YN  M       + +    
Sbjct: 143 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNI-EQNVVTYNSMMMIYGKTLEHEKANN 201

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  EM +  IE ++ITYSTII+   +    D A   F+++  +G+  D+V Y  ++  Y 
Sbjct: 202 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYE 261

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           ++G V       +R +    +PD I   +   +   +G  +   +V ++    G   ++ 
Sbjct: 262 RAGLVAHA----KRLLHELKRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGXVKDIT 317

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
           V+  ++    K  K G    +FD+M   G  PD   +  ++  YGK      A +++  M
Sbjct: 318 VFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVYMEM 377

Query: 389 RE 390
           +E
Sbjct: 378 QE 379



 Score = 42.4 bits (98), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 33/152 (21%), Positives = 68/152 (44%), Gaps = 3/152 (1%)

Query: 394 PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAI 453
           P D +LY+ L+ +   +    +A  +F  +K S +  PD  +Y AM+N++G      +A 
Sbjct: 2   PGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFM-PDLVAYNAMINVFGKAKLFRDAR 60

Query: 454 ELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVV 513
            L  EM   GV  N    + L+    + ++  + + VF    +     D   C  ++ V 
Sbjct: 61  SLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVY 120

Query: 514 SLCETSEDVGKVITCLQQAN--PKLVAFLNLI 543
                +++  K+   +++    P +V++  L+
Sbjct: 121 GQLGMAKEADKLFWGMRKMGIEPNVVSYNTLL 152


>gi|357499119|ref|XP_003619848.1| CCP [Medicago truncatula]
 gi|355494863|gb|AES76066.1| CCP [Medicago truncatula]
          Length = 556

 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 87/338 (25%), Positives = 161/338 (47%), Gaps = 8/338 (2%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQ---FQLIEQLANEMVSNEIELDNIT 224
           QK+  F + + +Q +   E  +  +     + GR    FQL++++  ++V   I    + 
Sbjct: 171 QKAMDFHDNVAAQGMLLDEVCYGTLINGLCKIGRSIDAFQLLQEMEGQVVKPNI----VI 226

Query: 225 YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
           Y+ II    +  L  +A + + ++   G+ PD +TY++++  + ++G+  EV  L    V
Sbjct: 227 YNMIIDSFCKDELTCKARDLYLKIVDMGIDPDILTYTSLIRGFCRTGQWGEVKQLMCEMV 286

Query: 285 ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344
                P+   F+VL   F   G     + +   M   G QP++V +NTL+      G   
Sbjct: 287 NKNINPNVYTFNVLIDAFCRKGKMIEAQGMFNLMVKRGQQPDIVTFNTLISGHCLHGNVL 346

Query: 345 LARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
            AR LFD + E G+ PD  + T LI  Y K +   +A+ L+  MR     +D +LY++L+
Sbjct: 347 EARKLFDTVFERGILPDVWSYTILIIGYCKCKRIDEAVSLFNEMRCKNMVLDIVLYSSLI 406

Query: 405 NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
           +     G +  A  LF  +  +D   P+  +Y  +++ +    ++D  IELF+ M   G+
Sbjct: 407 DGLCKSGRISYAWELFSTIN-NDGPPPNVITYNILIDAFCKIQDIDMGIELFKLMCGKGL 465

Query: 465 AINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
              V+    LI    K++RI + + +  V   + + PD
Sbjct: 466 TPTVLTYNILINGYCKSKRIREAMNLLSVMQSKNLAPD 503



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 129/283 (45%), Gaps = 1/283 (0%)

Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS 261
           Q+  ++QL  EMV+  I  +  T++ +I    R     EA   F  M K G  PD VT++
Sbjct: 274 QWGEVKQLMCEMVNKNINPNVYTFNVLIDAFCRKGKMIEAQGMFNLMVKRGQQPDIVTFN 333

Query: 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
            ++  +   G V E   L++     G  PD  ++++L   + +    D    +  EM+  
Sbjct: 334 TLISGHCLHGNVLEARKLFDTVFERGILPDVWSYTILIIGYCKCKRIDEAVSLFNEMRCK 393

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
            +  ++V+Y++L++ + K+G+   A  LF  +   G  P+  T   LI  + K +     
Sbjct: 394 NMVLDIVLYSSLIDGLCKSGRISYAWELFSTINNDGPPPNVITYNILIDAFCKIQDIDMG 453

Query: 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
           +EL++ M         + YN L+N       + EA  L   M+ S    PD+ +Y ++ +
Sbjct: 454 IELFKLMCGKGLTPTVLTYNILINGYCKSKRIREAMNLLSVMQ-SKNLAPDSITYNSLFD 512

Query: 442 IYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484
                G + +A ELF+ M   G  ++V     L+    KA+ +
Sbjct: 513 GLCKSGRISDAWELFKVMHVGGPPVDVATYNVLLDAFCKAQDV 555



 Score = 42.4 bits (98), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 79/181 (43%), Gaps = 7/181 (3%)

Query: 325 PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIY---GKARWAKDA 381
           P+++ +NT++ ++ K     +A SL  +MV  G+TP   TL+  I  Y   G+  +A   
Sbjct: 82  PSVIQFNTIIGSVVKMKHCPVAISLLKQMVFKGVTPSIFTLSIWINCYCHLGEMGFAFSV 141

Query: 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
           L +   ++    P +  L   +  +C + G V++A   F D   +     D   Y  ++N
Sbjct: 142 LGI--VLKRGYQPNNITLTTVMKGLCIN-GEVQKAMD-FHDNVAAQGMLLDEVCYGTLIN 197

Query: 442 IYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
                G   +A +L +EM    V  N++    +I    K         ++   +D G+ P
Sbjct: 198 GLCKIGRSIDAFQLLQEMEGQVVKPNIVIYNMIIDSFCKDELTCKARDLYLKIVDMGIDP 257

Query: 502 D 502
           D
Sbjct: 258 D 258



 Score = 41.6 bits (96), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 28/124 (22%), Positives = 53/124 (42%)

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           P   I YN+ + +    +   +  +L   M    +    +TY+ +I    +     EA+ 
Sbjct: 431 PPNVITYNILIDAFCKIQDIDMGIELFKLMCGKGLTPTVLTYNILINGYCKSKRIREAMN 490

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
               M    L PD +TY+++ D   KSG++ +   L++     G   D   ++VL   F 
Sbjct: 491 LLSVMQSKNLAPDSITYNSLFDGLCKSGRISDAWELFKVMHVGGPPVDVATYNVLLDAFC 550

Query: 304 ESGD 307
           ++ D
Sbjct: 551 KAQD 554


>gi|242042646|ref|XP_002459194.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
 gi|241922571|gb|EER95715.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
          Length = 847

 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 90/351 (25%), Positives = 144/351 (41%), Gaps = 34/351 (9%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + YN  M+ L    + Q   Q    M++     D+ TY+TII    + ++  EA E  
Sbjct: 183 DVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTIIDGYCKRDMLQEATELL 242

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           +     G +PD VTY ++++     G VE  L L+    A   KPD + ++ L K     
Sbjct: 243 KDAIFKGFVPDRVTYCSLINGLCAEGDVERALELFNEAQAKDLKPDLVVYNSLVKGLCRQ 302

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G       V+ EM   G  P++  YN ++  + K G    A  + ++ +  G  PD  T 
Sbjct: 303 GLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVVMNDAIVKGYLPDVFTF 362

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
             +I  Y K      AL+L ERM       D I YN++LN     G  +E    FE+M L
Sbjct: 363 NTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNSVLNGLCKAGKAKEVNETFEEMIL 422

Query: 426 S--------------DYCK--------------------PDNYSYTAMLNIYGSGGNVDN 451
                          ++CK                    PD  S+  +++ +   G++D 
Sbjct: 423 KGCRPNAITYNILIENFCKINQLEEASGVIVRMSQDGLVPDTISFNTLIHGFCRNGDLDG 482

Query: 452 AIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           A  LF+++ E G +        LI        +    ++FG  I +G KPD
Sbjct: 483 AYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPD 533



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 87/338 (25%), Positives = 157/338 (46%), Gaps = 8/338 (2%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIE--QLANEMVSNEIELDNITY 225
           +++   FN  ++++L P + + YN  +K L   RQ  ++   Q+ NEMV +    D  TY
Sbjct: 271 ERALELFNEAQAKDLKP-DLVVYNSLVKGL--CRQGLILHALQVMNEMVEDGCHPDIWTY 327

Query: 226 STIIT-CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
           + +I    K  N+ D A+   + + K G +PD  T++ ++D Y K  K++  L L ER  
Sbjct: 328 NIVINGLCKMGNISDAAVVMNDAIVK-GYLPDVFTFNTMIDGYCKRLKLDSALQLVERMW 386

Query: 285 ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344
             G  PD I ++ +     ++G    +    +EM   G +PN + YN L+E   K  +  
Sbjct: 387 MYGIAPDAITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLE 446

Query: 345 LARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
            A  +   M + GL PD  +   LI  + +      A  L++++ E  +      +N L+
Sbjct: 447 EASGVIVRMSQDGLVPDTISFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILI 506

Query: 405 NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
              +    ++ AE++F +M    Y KPD Y+Y  +++      NVD A     EM   G 
Sbjct: 507 GAYSSKLNMQMAEKIFGEMISKGY-KPDLYTYRVLVDGSCKAANVDRAYVHLAEMVSKGF 565

Query: 465 AINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
             ++     ++  L    R+ + V +  + +  GV P+
Sbjct: 566 VPSMATFGRVLNSLAMNHRVSEAVAIIHIMVRMGVVPE 603



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 83/356 (23%), Positives = 154/356 (43%), Gaps = 39/356 (10%)

Query: 191 NVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYK 250
           N+ ++ L  G + +    L   M    I  D +TY+T++    + +   EA ++  RM  
Sbjct: 154 NIWIRGLCEGGRLEEAVALVESM-DAYIAPDVVTYNTLMRGLCKDSKVQEAAQYLRRMMN 212

Query: 251 TGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDG 310
            G +PD+ TY+ I+D Y K   ++E   L +  +  G+ PD + +  L       GD + 
Sbjct: 213 QGCIPDDFTYNTIIDGYCKRDMLQEATELLKDAIFKGFVPDRVTYCSLINGLCAEGDVER 272

Query: 311 IRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK 370
              +  E ++  ++P+LVVYN+L++ + + G    A  + +EMVE G  PD         
Sbjct: 273 ALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEDGCHPD--------- 323

Query: 371 IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCK 430
                        +W              YN ++N    +G + +A  +  D  +  Y  
Sbjct: 324 -------------IWT-------------YNIVINGLCKMGNISDAAVVMNDAIVKGYL- 356

Query: 431 PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRV 490
           PD +++  M++ Y     +D+A++L E M   G+A + +    ++  L KA +  ++   
Sbjct: 357 PDVFTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNSVLNGLCKAGKAKEVNET 416

Query: 491 FGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAFLNLIE 544
           F   I +G +P+      L+         E+   VI  + Q    P  ++F  LI 
Sbjct: 417 FEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMSQDGLVPDTISFNTLIH 472



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 78/355 (21%), Positives = 152/355 (42%), Gaps = 5/355 (1%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           P  P     +  L +  +  +++  +  + S  + P +   + V +KS     +  +  +
Sbjct: 8   PAAPAYNAIMDALVNTAYHDQAHKVYVRMLSAGVAP-DARTHTVRIKSFCITGRPHVALR 66

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L   +     ++  + Y T++          +A   F+ M +  + PD  T++ +L    
Sbjct: 67  LLRSLPERGCDVKPLAYCTVVRGLYAHGHGYDARHLFDEMLRRDVFPDVATFNNVLHALC 126

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           + G + E  +L  + +  G   +    ++  +   E G  +    +++ M +  + P++V
Sbjct: 127 QKGDIMESGALLAKVLKRGMSVNKFTCNIWIRGLCEGGRLEEAVALVESMDAY-IAPDVV 185

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            YNTL+  + K  K   A      M+  G  PD+ T   +I  Y K    ++A EL +  
Sbjct: 186 TYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTIIDGYCKRDMLQEATELLKDA 245

Query: 389 RENKWPMDFILYNTLLN-MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
               +  D + Y +L+N +CA+ G VE A  LF + +  D  KPD   Y +++      G
Sbjct: 246 IFKGFVPDRVTYCSLINGLCAE-GDVERALELFNEAQAKDL-KPDLVVYNSLVKGLCRQG 303

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            + +A+++  EM E G   ++     +I  L K   I D   V   +I +G  PD
Sbjct: 304 LILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVVMNDAIVKGYLPD 358



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 114/287 (39%), Gaps = 39/287 (13%)

Query: 252 GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGI 311
           G  P    Y+AI+D    +   ++   +Y R +++G  PD    +V  K F  +G     
Sbjct: 5   GCPPAAPAYNAIMDALVNTAYHDQAHKVYVRMLSAGVAPDARTHTVRIKSFCITGRPHVA 64

Query: 312 RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT------- 364
             +L+ +   G     + Y T++  +   G    AR LFDEM+   + PD  T       
Sbjct: 65  LRLLRSLPERGCDVKPLAYCTVVRGLYAHGHGYDARHLFDEMLRRDVFPDVATFNNVLHA 124

Query: 365 --------------------------LTALIKIYGKARWAK--DALELWERMRENKWPMD 396
                                      T  I I G     +  +A+ L E M     P D
Sbjct: 125 LCQKGDIMESGALLAKVLKRGMSVNKFTCNIWIRGLCEGGRLEEAVALVESMDAYIAP-D 183

Query: 397 FILYNTLL-NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIEL 455
            + YNTL+  +C D   V+EA +    M ++  C PD+++Y  +++ Y     +  A EL
Sbjct: 184 VVTYNTLMRGLCKD-SKVQEAAQYLRRM-MNQGCIPDDFTYNTIIDGYCKRDMLQEATEL 241

Query: 456 FEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            ++    G   + +    LI  L     ++  + +F  +  + +KPD
Sbjct: 242 LKDAIFKGFVPDRVTYCSLINGLCAEGDVERALELFNEAQAKDLKPD 288



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 126/290 (43%), Gaps = 27/290 (9%)

Query: 318 MKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARW 377
           M   G  P    YN +++A+        A  ++  M+ +G+ PD +T T  IK +     
Sbjct: 1   MDLFGCPPAAPAYNAIMDALVNTAYHDQAHKVYVRMLSAGVAPDARTHTVRIKSFCITGR 60

Query: 378 AKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYT 437
              AL L   + E    +  + Y T++      G   +A  LF++M   D   PD  ++ 
Sbjct: 61  PHVALRLLRSLPERGCDVKPLAYCTVVRGLYAHGHGYDARHLFDEMLRRDV-FPDVATFN 119

Query: 438 AMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDR 497
            +L+     G++  +  L  ++ + G+++N   C   I+ L +  R+++ V +   S+D 
Sbjct: 120 NVLHALCQKGDIMESGALLAKVLKRGMSVNKFTCNIWIRGLCEGGRLEEAVALVE-SMDA 178

Query: 498 GVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLN--LIEDNST------G 549
            + PD      L+    LC+ S+        +Q+A   L   +N   I D+ T      G
Sbjct: 179 YIAPDVVTYNTLMR--GLCKDSK--------VQEAAQYLRRMMNQGCIPDDFTYNTIIDG 228

Query: 550 F--ENIKEEFRNVIKDTE----VDARRPFCNCLIDICRNRNLNERAHELL 593
           +   ++ +E   ++KD      V  R  +C+ +  +C   ++ ERA EL 
Sbjct: 229 YCKRDMLQEATELLKDAIFKGFVPDRVTYCSLINGLCAEGDV-ERALELF 277


>gi|293333246|ref|NP_001169278.1| uncharacterized protein LOC100383141 [Zea mays]
 gi|224028343|gb|ACN33247.1| unknown [Zea mays]
          Length = 901

 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 140/284 (49%), Gaps = 2/284 (0%)

Query: 219 ELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS 278
           E D + Y+ +I    +   +D     FE M ++G+  DE TY++++ +++  G       
Sbjct: 470 EKDIVEYNVMIKAYGQAKQYDRVSSLFESMEESGVPSDECTYNSLIQMFSFGGFPHRAKK 529

Query: 279 LYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMG 338
           L  +   +G++P    +S + + +           +  EMK+ GV+PN++VY  L++   
Sbjct: 530 LLGKMKDAGFEPKCETYSAIIRSYSRHCLVPEAIDLFNEMKASGVEPNVIVYGILIDMFA 589

Query: 339 KAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFI 398
           + G    A    + + +SG++P+   LT+LIK Y K    K+A +L+ RM +     D I
Sbjct: 590 ETGNVKEALHYSNLLEQSGISPNHIVLTSLIKAYSKFNSWKEAQDLYSRMNDMDGGPDII 649

Query: 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458
             N +LN+ A + +V EA+ +F+ ++ +++   D  SYT M  +Y S G +  +I +  +
Sbjct: 650 ASNAMLNLYAKLEMVTEAKEIFDSLRRNNHA--DAVSYTTMAYLYKSIGLLSESIRITHK 707

Query: 459 MSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           + + G+  +   C  ++ C G    + D   +    +   + PD
Sbjct: 708 LQKSGLLSDCASCNAVMACYGAKGNLRDCAELVHQMVVANIPPD 751



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 137/292 (46%), Gaps = 10/292 (3%)

Query: 176 WIKSQNLFPME--------TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           W +++++F  E         + YNV +K+    +Q+  +  L   M  + +  D  TY++
Sbjct: 454 WEEAEHIFCSERGDGNEKDIVEYNVMIKAYGQAKQYDRVSSLFESMEESGVPSDECTYNS 513

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           +I           A +   +M   G  P   TYSAI+  Y++   V E + L+    ASG
Sbjct: 514 LIQMFSFGGFPHRAKKLLGKMKDAGFEPKCETYSAIIRSYSRHCLVPEAIDLFNEMKASG 573

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
            +P+ I + +L  MF E+G+     +    ++  G+ PN +V  +L++A  K      A+
Sbjct: 574 VEPNVIVYGILIDMFAETGNVKEALHYSNLLEQSGISPNHIVLTSLIKAYSKFNSWKEAQ 633

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
            L+  M +    PD     A++ +Y K     +A E+++ +R N    D + Y T+  + 
Sbjct: 634 DLYSRMNDMDGGPDIIASNAMLNLYAKLEMVTEAKEIFDSLRRNNHA-DAVSYTTMAYLY 692

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
             IGL+ E+ R+   ++ S     D  S  A++  YG+ GN+ +  EL  +M
Sbjct: 693 KSIGLLSESIRITHKLQKSGLLS-DCASCNAVMACYGAKGNLRDCAELVHQM 743



 Score =  102 bits (254), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 132/261 (50%), Gaps = 12/261 (4%)

Query: 236 NLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY--ERGVASGWKPDPI 293
            L DEAI +FE+  + G       +SAI+DV+A  G  EE   ++  ERG   G + D +
Sbjct: 418 GLLDEAIAFFEKHCR-GKGVSSKNFSAIMDVFAGRGLWEEAEHIFCSERG--DGNEKDIV 474

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
            ++V+ K +G++  YD +  + + M+  GV  +   YN+L++     G P  A+ L  +M
Sbjct: 475 EYNVMIKAYGQAKQYDRVSSLFESMEESGVPSDECTYNSLIQMFSFGGFPHRAKKLLGKM 534

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
            ++G  P  +T +A+I+ Y +     +A++L+  M+ +    + I+Y  L++M A+ G V
Sbjct: 535 KDAGFEPKCETYSAIIRSYSRHCLVPEAIDLFNEMKASGVEPNVIVYGILIDMFAETGNV 594

Query: 414 EEA---ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG 470
           +EA     L E   +S    P++   T+++  Y    +   A +L+  M+++    +++ 
Sbjct: 595 KEALHYSNLLEQSGIS----PNHIVLTSLIKAYSKFNSWKEAQDLYSRMNDMDGGPDIIA 650

Query: 471 CTCLIQCLGKARRIDDLVRVF 491
              ++    K   + +   +F
Sbjct: 651 SNAMLNLYAKLEMVTEAKEIF 671



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/279 (24%), Positives = 129/279 (46%), Gaps = 2/279 (0%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           +TY+ +I    +      A++ F  M   G+MPD  T++ +++++  SG   +   L+  
Sbjct: 265 VTYNVLIDLYGKAGKLKNALDMFLDMPAHGVMPDTYTFNTLINIFGFSGNSAQAEVLFAS 324

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
            V  G KPD   ++V+  +F   GD +G+     ++++ G+ P+ V Y  LL+ + +   
Sbjct: 325 MVIRGVKPDTKTYNVMMTVFASIGDLEGVLKYYCQIRNAGLHPDAVTYRILLQVLCERKM 384

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
              A  + + ++++G    E++L  ++K+Y       +A+  +E+    K  +    ++ 
Sbjct: 385 VHKAEDVIEGILKAGSFVHEQSLPVVMKMYVDLGLLDEAIAFFEKHCRGKG-VSSKNFSA 443

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
           ++++ A  GL EEAE +F   +  D  + D   Y  M+  YG     D    LFE M E 
Sbjct: 444 IMDVFAGRGLWEEAEHIFCSER-GDGNEKDIVEYNVMIKAYGQAKQYDRVSSLFESMEES 502

Query: 463 GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
           GV  +      LIQ            ++ G   D G +P
Sbjct: 503 GVPSDECTYNSLIQMFSFGGFPHRAKKLLGKMKDAGFEP 541



 Score = 89.0 bits (219), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 80/383 (20%), Positives = 160/383 (41%), Gaps = 37/383 (9%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           +T  +N  +    F       E L   MV   ++ D  TY+ ++T        +  ++++
Sbjct: 298 DTYTFNTLINIFGFSGNSAQAEVLFASMVIRGVKPDTKTYNVMMTVFASIGDLEGVLKYY 357

Query: 246 ERMYKTGLMPDEVTYSAILDV-----------------------------------YAKS 270
            ++   GL PD VTY  +L V                                   Y   
Sbjct: 358 CQIRNAGLHPDAVTYRILLQVLCERKMVHKAEDVIEGILKAGSFVHEQSLPVVMKMYVDL 417

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
           G ++E ++ +E+    G       FS +  +F   G ++   ++    +  G + ++V Y
Sbjct: 418 GLLDEAIAFFEKH-CRGKGVSSKNFSAIMDVFAGRGLWEEAEHIFCSERGDGNEKDIVEY 476

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
           N +++A G+A +     SLF+ M ESG+  DE T  +LI+++    +   A +L  +M++
Sbjct: 477 NVMIKAYGQAKQYDRVSSLFESMEESGVPSDECTYNSLIQMFSFGGFPHRAKKLLGKMKD 536

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
             +      Y+ ++   +   LV EA  LF +MK S   +P+   Y  +++++   GNV 
Sbjct: 537 AGFEPKCETYSAIIRSYSRHCLVPEAIDLFNEMKASG-VEPNVIVYGILIDMFAETGNVK 595

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
            A+     + + G++ N +  T LI+   K     +   ++    D    PD      +L
Sbjct: 596 EALHYSNLLEQSGISPNHIVLTSLIKAYSKFNSWKEAQDLYSRMNDMDGGPDIIASNAML 655

Query: 511 SVVSLCETSEDVGKVITCLQQAN 533
           ++ +  E   +  ++   L++ N
Sbjct: 656 NLYAKLEMVTEAKEIFDSLRRNN 678



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 77/363 (21%), Positives = 134/363 (36%), Gaps = 66/363 (18%)

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           P +   YN  ++   FG      ++L  +M     E    TYS II    R  L  EAI+
Sbjct: 505 PSDECTYNSLIQMFSFGGFPHRAKKLLGKMKDAGFEPKCETYSAIIRSYSRHCLVPEAID 564

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
            F  M  +G+ P+ + Y  ++D++A++G V+E L        SG  P+ I  + L K + 
Sbjct: 565 LFNEMKASGVEPNVIVYGILIDMFAETGNVKEALHYSNLLEQSGISPNHIVLTSLIKAYS 624

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD------------ 351
           +   +   + +   M  +   P+++  N +L    K      A+ +FD            
Sbjct: 625 KFNSWKEAQDLYSRMNDMDGGPDIIASNAMLNLYAKLEMVTEAKEIFDSLRRNNHADAVS 684

Query: 352 ----------------------EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMR 389
                                 ++ +SGL  D  +  A++  YG     +D  EL  +M 
Sbjct: 685 YTTMAYLYKSIGLLSESIRITHKLQKSGLLSDCASCNAVMACYGAKGNLRDCAELVHQMV 744

Query: 390 ENKWPMDF----ILYNTLLNMCADIGLVEEAERLFEDMKLS------------------- 426
               P D     ++++ L N       + + E  ++D K S                   
Sbjct: 745 VANIPPDASTFEMIFSLLKNGHVSTKEILQLESAYDDGKKSAKQAIIAFLFSVAGMHDAA 804

Query: 427 -DYCKP--------DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
            + C          D  ++     +Y S   V+ A  LF  M +LG+  +   C  L  C
Sbjct: 805 LEICGKMLMPQSTLDACAHNVCFKVYASSRKVEKAFSLFMWMRDLGLKPDTSTCNHLATC 864

Query: 478 LGK 480
            G+
Sbjct: 865 YGR 867



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 105/236 (44%), Gaps = 22/236 (9%)

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
            M   G+ PDEV+ +  + +    G+ ++ L+L+       ++ D +    +      + 
Sbjct: 175 HMRTRGVAPDEVSMNTFVRILKDEGRHDDALALFHSWCDGRFEVDFLDLDCI------TV 228

Query: 307 DYDG-IRYVLQEM-------KSLGVQPN-------LVVYNTLLEAMGKAGKPGLARSLFD 351
           D DG ++++L +M        + GV P        +V YN L++  GKAGK   A  +F 
Sbjct: 229 DLDGPMQFLLADMYDDKIAAPAAGVAPERPRKPKLVVTYNVLIDLYGKAGKLKNALDMFL 288

Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411
           +M   G+ PD  T   LI I+G +  +  A  L+  M       D   YN ++ + A IG
Sbjct: 289 DMPAHGVMPDTYTFNTLINIFGFSGNSAQAEVLFASMVIRGVKPDTKTYNVMMTVFASIG 348

Query: 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
            +E   + +  ++ +    PD  +Y  +L +      V  A ++ E + + G  ++
Sbjct: 349 DLEGVLKYYCQIRNAGL-HPDAVTYRILLQVLCERKMVHKAEDVIEGILKAGSFVH 403



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 85/208 (40%), Gaps = 20/208 (9%)

Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411
            M   G+ PDE ++   ++I        DAL L+    + ++ +DF+  +     C  + 
Sbjct: 175 HMRTRGVAPDEVSMNTFVRILKDEGRHDDALALFHSWCDGRFEVDFLDLD-----CITVD 229

Query: 412 LVEEAERLFEDMKLSDYCKPDN-------------YSYTAMLNIYGSGGNVDNAIELFEE 458
           L    + L  DM       P                +Y  ++++YG  G + NA+++F +
Sbjct: 230 LDGPMQFLLADMYDDKIAAPAAGVAPERPRKPKLVVTYNVLIDLYGKAGKLKNALDMFLD 289

Query: 459 MSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCET 518
           M   GV  +      LI   G +        +F   + RGVKPD +    +++V +    
Sbjct: 290 MPAHGVMPDTYTFNTLINIFGFSGNSAQAEVLFASMVIRGVKPDTKTYNVMMTVFASIGD 349

Query: 519 SEDVGKVITCLQQA--NPKLVAFLNLIE 544
            E V K    ++ A  +P  V +  L++
Sbjct: 350 LEGVLKYYCQIRNAGLHPDAVTYRILLQ 377



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 86/213 (40%), Gaps = 18/213 (8%)

Query: 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA--------- 367
            M++ GV P+ V  NT +  +   G+   A +LF    +     D   L           
Sbjct: 175 HMRTRGVAPDEVSMNTFVRILKDEGRHDDALALFHSWCDGRFEVDFLDLDCITVDLDGPM 234

Query: 368 ---LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
              L  +Y     A  A    ER R+   P   + YN L+++    G ++ A  +F DM 
Sbjct: 235 QFLLADMYDDKIAAPAAGVAPERPRK---PKLVVTYNVLIDLYGKAGKLKNALDMFLDMP 291

Query: 425 LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484
            +    PD Y++  ++NI+G  GN   A  LF  M   GV  +      ++        +
Sbjct: 292 -AHGVMPDTYTFNTLINIFGFSGNSAQAEVLFASMVIRGVKPDTKTYNVMMTVFASIGDL 350

Query: 485 DDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCE 517
           + +++ +    + G+ PD      LL V  LCE
Sbjct: 351 EGVLKYYCQIRNAGLHPDAVTYRILLQV--LCE 381



 Score = 42.4 bits (98), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 39/194 (20%), Positives = 74/194 (38%), Gaps = 2/194 (1%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D ++Y+T+    K   L  E+I    ++ K+GL+ D  + +A++  Y   G + +   L 
Sbjct: 681 DAVSYTTMAYLYKSIGLLSESIRITHKLQKSGLLSDCASCNAVMACYGAKGNLRDCAELV 740

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
            + V +   PD   F ++  +      +   + +LQ   +            +      A
Sbjct: 741 HQMVVANIPPDASTFEMIFSLL--KNGHVSTKEILQLESAYDDGKKSAKQAIIAFLFSVA 798

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G    A  +  +M+    T D        K+Y  +R  + A  L+  MR+     D    
Sbjct: 799 GMHDAALEICGKMLMPQSTLDACAHNVCFKVYASSRKVEKAFSLFMWMRDLGLKPDTSTC 858

Query: 401 NTLLNMCADIGLVE 414
           N L      +G +E
Sbjct: 859 NHLATCYGRLGALE 872


>gi|224077524|ref|XP_002305285.1| predicted protein [Populus trichocarpa]
 gi|222848249|gb|EEE85796.1| predicted protein [Populus trichocarpa]
          Length = 523

 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 92/368 (25%), Positives = 155/368 (42%), Gaps = 37/368 (10%)

Query: 170 SYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMV-SNEIELDNITYSTI 228
           ++ FF W K    F      Y++ +  L   RQF ++     EM  S++ E++      +
Sbjct: 95  AHRFFLWAKRIPGFEHSEESYHILVNILGTSRQFAILWDFLIEMRESHDFEINQEIIWLV 154

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
                R NL  +AI  F+RM + GL P       +L V  K   V+     ++R V   +
Sbjct: 155 FRSYSRANLPSDAIRAFDRMAEFGLRPSVDDLDKLLYVLCKCKHVKCAQQFFDR-VKHKF 213

Query: 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348
           +     +S+L + +G+ G+    R V  EM+  G   +++ YN+LLEA+ K G    A  
Sbjct: 214 EAKAKTYSILVRGWGDIGEAVEARKVFDEMRGRGCALDVLAYNSLLEALCKGGNVDEAYK 273

Query: 349 LFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCA 408
           +F E+   G+ PD  +    I+ Y +A        + +RM+      +   YN ++    
Sbjct: 274 MFREIGSHGVEPDACSYAIFIRAYCEANNIHSVFSVLDRMKRYDLVPNVFTYNCIIKKLC 333

Query: 409 DIGLVEEAERLFEDM----------------------------------KLSDYCKPDNY 434
             G VE+A +L  +M                                   + D C PD +
Sbjct: 334 KNGKVEDAYQLLHEMMERGVSPDAWSYNTILAYHCEHSEVNRATKLISIMVKDNCLPDRH 393

Query: 435 SYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKAR-RIDDLVRVFGV 493
           SY  +L +    G  D A E++E M E G   +V   + +I  L K + ++++  R F  
Sbjct: 394 SYNMLLKLLVRVGRFDRATEIWESMGERGFYPSVSTYSVMIHGLCKKKGKLEEACRYFET 453

Query: 494 SIDRGVKP 501
            ID G+ P
Sbjct: 454 MIDEGIPP 461



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 143/329 (43%), Gaps = 16/329 (4%)

Query: 158 LLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIE--QLANEMVS 215
           L +L   K  + +  FF+ +K +  F  +   Y++ ++   +G   + +E  ++ +EM  
Sbjct: 190 LYVLCKCKHVKCAQQFFDRVKHK--FEAKAKTYSILVRG--WGDIGEAVEARKVFDEMRG 245

Query: 216 NEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEE 275
               LD + Y++++    +    DEA + F  +   G+ PD  +Y+  +  Y ++  +  
Sbjct: 246 RGCALDVLAYNSLLEALCKGGNVDEAYKMFREIGSHGVEPDACSYAIFIRAYCEANNIHS 305

Query: 276 VLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLE 335
           V S+ +R       P+   ++ + K   ++G  +    +L EM   GV P+   YNT+L 
Sbjct: 306 VFSVLDRMKRYDLVPNVFTYNCIIKKLCKNGKVEDAYQLLHEMMERGVSPDAWSYNTILA 365

Query: 336 AMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPM 395
              +  +   A  L   MV+    PD  +   L+K+  +      A E+WE M E  +  
Sbjct: 366 YHCEHSEVNRATKLISIMVKDNCLPDRHSYNMLLKLLVRVGRFDRATEIWESMGERGFYP 425

Query: 396 DFILYNTLLN-MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIE 454
               Y+ +++ +C   G +EEA R FE M   D   P   S   ML     G  + + IE
Sbjct: 426 SVSTYSVMIHGLCKKKGKLEEACRYFETM--IDEGIPPYASTIEMLRNRLIGFGLLDHIE 483

Query: 455 LFEEMSELGVAINVMGCTCLIQCLGKARR 483
           +     E G        +C IQ L K  R
Sbjct: 484 ILACKMERGT-------SCSIQELAKEMR 505



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 92/194 (47%), Gaps = 3/194 (1%)

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
           D IR     M   G++P++   + LL  + K      A+  FD  V+       KT + L
Sbjct: 166 DAIR-AFDRMAEFGLRPSVDDLDKLLYVLCKCKHVKCAQQFFDR-VKHKFEAKAKTYSIL 223

Query: 369 IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428
           ++ +G    A +A ++++ MR     +D + YN+LL      G V+EA ++F ++  S  
Sbjct: 224 VRGWGDIGEAVEARKVFDEMRGRGCALDVLAYNSLLEALCKGGNVDEAYKMFREIG-SHG 282

Query: 429 CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLV 488
            +PD  SY   +  Y    N+ +   + + M    +  NV    C+I+ L K  +++D  
Sbjct: 283 VEPDACSYAIFIRAYCEANNIHSVFSVLDRMKRYDLVPNVFTYNCIIKKLCKNGKVEDAY 342

Query: 489 RVFGVSIDRGVKPD 502
           ++    ++RGV PD
Sbjct: 343 QLLHEMMERGVSPD 356


>gi|410110143|gb|AFV61151.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           velutina]
          Length = 382

 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 82/366 (22%), Positives = 171/366 (46%), Gaps = 6/366 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K     P + + YN  +      + F+    L +EM +  +  +  +YS
Sbjct: 21  YSKAISIFSRLKRSGFTP-DLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYS 79

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY + G  +E   L+      
Sbjct: 80  TLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 139

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   ++ N+V YN+++   GK  +   A
Sbjct: 140 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKA 199

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R +   +D IL+ T++  
Sbjct: 200 NNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVA 259

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K     +PDN      ++I    G ++ A  +F +  + G   
Sbjct: 260 YERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAVDAGEVK 314

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           ++     ++  L K ++  ++V VF      G  PD  +   +L+     +  +    V 
Sbjct: 315 DITVFERMVHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVY 374

Query: 527 TCLQQA 532
             +Q+ 
Sbjct: 375 MEMQEV 380



 Score =  109 bits (272), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 134/261 (51%), Gaps = 1/261 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D + YS +I  +++   + +AI  F R+ ++G  PD V Y+A+++V+ K+    E  SL 
Sbjct: 4   DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLI 63

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
                +G  P+  ++S L  M+ E+  +     V  EM+ +    +L   N +++  G+ 
Sbjct: 64  SEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQL 123

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G    A  LF  M + G+ P+  +   L+++YG A    +A+ L+  M+      + + Y
Sbjct: 124 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 183

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           N+++ +       E+A  L ++M+ S   +P++ +Y+ +++I+G  G +D A  LF+++ 
Sbjct: 184 NSMMMIYGKTLEHEKANNLIQEMQ-SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLR 242

Query: 461 ELGVAINVMGCTCLIQCLGKA 481
             GV I+ +    +I    +A
Sbjct: 243 SSGVEIDQILFQTMIVAYERA 263



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 82/169 (48%), Gaps = 1/169 (0%)

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382
           V  +LV+Y+ L+E   K      A S+F  +  SG TPD     A+I ++GKA+  ++A 
Sbjct: 1   VPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREAR 60

Query: 383 ELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNI 442
            L   M+      +   Y+TLL M  +     EA  +F +M+    C  D  +   M+++
Sbjct: 61  SLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMR-EIKCLLDLTTCNIMIDV 119

Query: 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           YG  G    A +LF  M ++G+  NV+    L++  G A    + + +F
Sbjct: 120 YGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLF 168



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/242 (21%), Positives = 100/242 (41%), Gaps = 36/242 (14%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGR--QFQLI 206
           P+  +    L +    + + ++   F  ++ +N+     + YN  M  + +G+  + +  
Sbjct: 143 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNI-EQNVVTYNSMM--MIYGKTLEHEKA 199

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
             L  EM S  IE ++ITYSTII+   +    D A   F+++  +G+  D++ +  ++  
Sbjct: 200 NNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVA 259

Query: 267 Y-------------------------------AKSGKVEEVLSLYERGVASGWKPDPIAF 295
           Y                               A +G++EE   ++ + V +G   D   F
Sbjct: 260 YERAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAVDAGEVKDITVF 319

Query: 296 SVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVE 355
             +  +  +   Y  +  V  +M+ LG  P+  V   +L A GK  +   A  ++ EM E
Sbjct: 320 ERMVHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEMQE 379

Query: 356 SG 357
            G
Sbjct: 380 VG 381



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 69/153 (45%), Gaps = 1/153 (0%)

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
           A+ ++ R++ + +  D + YN ++N+     L  EA  L  +MK +    P+  SY+ +L
Sbjct: 24  AISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAG-VMPNTTSYSTLL 82

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
            +Y        A+ +F EM E+   +++  C  +I   G+     +  ++F      G++
Sbjct: 83  TMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 142

Query: 501 PDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN 533
           P+      LL V    E   +   +   +Q+ N
Sbjct: 143 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKN 175


>gi|334182346|ref|NP_172156.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332189906|gb|AEE28027.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 997

 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 96/371 (25%), Positives = 159/371 (42%), Gaps = 46/371 (12%)

Query: 205 LIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAIL 264
           L E+  +EM++  + L+ I  S+   C      +++A      M   G +PD  TYS +L
Sbjct: 431 LAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVL 490

Query: 265 DVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQ 324
           +    + K+E    L+E     G   D   ++++   F ++G  +  R    EM+ +G  
Sbjct: 491 NYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCT 550

Query: 325 PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384
           PN+V Y  L+ A  KA K   A  LF+ M+  G  P+  T +ALI  + KA   + A ++
Sbjct: 551 PNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQI 610

Query: 385 WERM----------------RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428
           +ERM                 +N    + + Y  LL+       VEEA +L + M +   
Sbjct: 611 FERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEG- 669

Query: 429 CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLV 488
           C+P+   Y A+++     G +D A E+  EMSE G    +   + LI    K +R D   
Sbjct: 670 CEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLAS 729

Query: 489 RVFGVSIDRGVKPD--------DRLC------------------GCLLSVVSLCETSED- 521
           +V    ++    P+        D LC                  GC  +VV+     +  
Sbjct: 730 KVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGF 789

Query: 522 --VGKVITCLQ 530
             +GK+ TCL+
Sbjct: 790 GMIGKIETCLE 800



 Score =  115 bits (288), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 89/370 (24%), Positives = 160/370 (43%), Gaps = 53/370 (14%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           ++K++     +  Q   P +T  Y+  +  L    + +L   L  EM    +  D  TY+
Sbjct: 464 YEKAFSVIREMIGQGFIP-DTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYT 522

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDE----------------------------- 257
            ++    +  L ++A +WF  M + G  P+                              
Sbjct: 523 IMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSE 582

Query: 258 ------VTYSAILDVYAKSGKVEEVLSLYERGVAS----------------GWKPDPIAF 295
                 VTYSA++D + K+G+VE+   ++ER   S                  +P+ + +
Sbjct: 583 GCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTY 642

Query: 296 SVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVE 355
             L   F +S   +  R +L  M   G +PN +VY+ L++ + K GK   A+ +  EM E
Sbjct: 643 GALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSE 702

Query: 356 SGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEE 415
            G      T ++LI  Y K +    A ++  +M EN    + ++Y  +++    +G  +E
Sbjct: 703 HGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDE 762

Query: 416 AERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLI 475
           A +L + M+    C+P+  +YTAM++ +G  G ++  +EL E M   GVA N +    LI
Sbjct: 763 AYKLMQMME-EKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLI 821

Query: 476 QCLGKARRID 485
               K   +D
Sbjct: 822 DHCCKNGALD 831



 Score =  103 bits (256), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 140/331 (42%), Gaps = 59/331 (17%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV---YAKSGKVEEVL 277
           D + Y+ +I+     +LF+EA+++  RM  T  +P+ VTYS +L       + G+ + VL
Sbjct: 301 DTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVL 360

Query: 278 SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLL--- 334
           ++    +  G  P P  F+ L   +  SGD+     +L++M   G  P  VVYN L+   
Sbjct: 361 NMM---MMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSI 417

Query: 335 --------------------------------------EAMGKAGKPGLARSLFDEMVES 356
                                                   +  AGK   A S+  EM+  
Sbjct: 418 CGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQ 477

Query: 357 GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEA 416
           G  PD  T + ++     A   + A  L+E M+      D   Y  +++     GL+E+A
Sbjct: 478 GFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQA 537

Query: 417 ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
            + F +M+    C P+  +YTA+++ Y     V  A ELFE M   G   N++  + LI 
Sbjct: 538 RKWFNEMREVG-CTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALID 596

Query: 477 CLGKARRIDDLVRVFGVSIDRGVKPDDRLCG 507
              KA +++   ++F           +R+CG
Sbjct: 597 GHCKAGQVEKACQIF-----------ERMCG 616



 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/304 (24%), Positives = 127/304 (41%), Gaps = 18/304 (5%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           FN ++     P   + Y   + +    ++     +L   M+S     + +TYS +I    
Sbjct: 541 FNEMREVGCTP-NVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHC 599

Query: 234 RCNLFDEAIEWFERMYKTGLMPDE----------------VTYSAILDVYAKSGKVEEVL 277
           +    ++A + FERM  +  +PD                 VTY A+LD + KS +VEE  
Sbjct: 600 KAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEAR 659

Query: 278 SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
            L +     G +P+ I +  L     + G  D  + V  EM   G    L  Y++L++  
Sbjct: 660 KLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRY 719

Query: 338 GKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDF 397
            K  +  LA  +  +M+E+   P+    T +I    K     +A +L + M E     + 
Sbjct: 720 FKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNV 779

Query: 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE 457
           + Y  +++    IG +E    L E M  S    P+  +Y  +++     G +D A  L E
Sbjct: 780 VTYTAMIDGFGMIGKIETCLELLERMG-SKGVAPNYVTYRVLIDHCCKNGALDVAHNLLE 838

Query: 458 EMSE 461
           EM +
Sbjct: 839 EMKQ 842



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 69/319 (21%), Positives = 125/319 (39%), Gaps = 43/319 (13%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           TY+ +I    + +  D A      M    L  D  T         K GK  E L+L E  
Sbjct: 237 TYNCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRCFAYSLCKVGKWREALTLVE-- 294

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
               + PD + ++ L     E+  ++     L  M++    PN+V Y+TLL       + 
Sbjct: 295 -TENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQL 353

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
           G  + + + M+  G  P  K   +L+  Y  +     A +L ++M +      +++YN L
Sbjct: 354 GRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNIL 413

Query: 404 L-NMCAD-----IGLVEEAERLFEDM----------KLSDYCK----------------- 430
           + ++C D       L++ AE+ + +M           +S + +                 
Sbjct: 414 IGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIRE 473

Query: 431 -------PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483
                  PD  +Y+ +LN   +   ++ A  LFEEM   G+  +V   T ++    KA  
Sbjct: 474 MIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGL 533

Query: 484 IDDLVRVFGVSIDRGVKPD 502
           I+   + F    + G  P+
Sbjct: 534 IEQARKWFNEMREVGCTPN 552


>gi|414886512|tpg|DAA62526.1| TPA: hypothetical protein ZEAMMB73_338715 [Zea mays]
          Length = 901

 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 140/284 (49%), Gaps = 2/284 (0%)

Query: 219 ELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS 278
           E D + Y+ +I    +   +D     FE M ++G+  DE TY++++ +++  G       
Sbjct: 470 EKDIVEYNVMIKAYGQAKQYDRVSSLFESMEESGVPSDECTYNSLIQMFSFGGFPHRAKK 529

Query: 279 LYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMG 338
           L  +   +G++P    +S + + +           +  EMK+ GV+PN++VY  L++   
Sbjct: 530 LLGKMKDAGFEPKCETYSAIIRSYSRHCLVPEAIDLFNEMKASGVEPNVIVYGILIDMFA 589

Query: 339 KAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFI 398
           + G    A    + + +SG++P+   LT+LIK Y K    K+A +L+ RM +     D I
Sbjct: 590 ETGNVKEALHYSNLLEQSGISPNHIVLTSLIKAYSKFNSWKEAQDLYSRMNDMDGGPDII 649

Query: 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458
             N +LN+ A + +V EA+ +F+ ++ +++   D  SYT M  +Y S G +  +I +  +
Sbjct: 650 ASNAMLNLYAKLEMVTEAKEIFDSLRRNNHA--DAVSYTTMAYLYKSIGLLSESIRITHK 707

Query: 459 MSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           + + G+  +   C  ++ C G    + D   +    +   + PD
Sbjct: 708 LQKSGLLSDCASCNAVMACYGAKGNLRDCAELVHQMVVANIPPD 751



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 137/292 (46%), Gaps = 10/292 (3%)

Query: 176 WIKSQNLFPME--------TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           W +++++F  E         + YNV +K+    +Q+  +  L   M  + +  D  TY++
Sbjct: 454 WEEAEHIFCSERGDGNEKDIVEYNVMIKAYGQAKQYDRVSSLFESMEESGVPSDECTYNS 513

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           +I           A +   +M   G  P   TYSAI+  Y++   V E + L+    ASG
Sbjct: 514 LIQMFSFGGFPHRAKKLLGKMKDAGFEPKCETYSAIIRSYSRHCLVPEAIDLFNEMKASG 573

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
            +P+ I + +L  MF E+G+     +    ++  G+ PN +V  +L++A  K      A+
Sbjct: 574 VEPNVIVYGILIDMFAETGNVKEALHYSNLLEQSGISPNHIVLTSLIKAYSKFNSWKEAQ 633

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
            L+  M +    PD     A++ +Y K     +A E+++ +R N    D + Y T+  + 
Sbjct: 634 DLYSRMNDMDGGPDIIASNAMLNLYAKLEMVTEAKEIFDSLRRNNHA-DAVSYTTMAYLY 692

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
             IGL+ E+ R+   ++ S     D  S  A++  YG+ GN+ +  EL  +M
Sbjct: 693 KSIGLLSESIRITHKLQKSGLLS-DCASCNAVMACYGAKGNLRDCAELVHQM 743



 Score =  102 bits (254), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 132/261 (50%), Gaps = 12/261 (4%)

Query: 236 NLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY--ERGVASGWKPDPI 293
            L DEAI +FE+  + G       +SAI+DV+A  G  EE   ++  ERG   G + D +
Sbjct: 418 GLLDEAIAFFEKHCR-GKGVSSKNFSAIMDVFAGRGLWEEAEHIFCSERG--DGNEKDIV 474

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
            ++V+ K +G++  YD +  + + M+  GV  +   YN+L++     G P  A+ L  +M
Sbjct: 475 EYNVMIKAYGQAKQYDRVSSLFESMEESGVPSDECTYNSLIQMFSFGGFPHRAKKLLGKM 534

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
            ++G  P  +T +A+I+ Y +     +A++L+  M+ +    + I+Y  L++M A+ G V
Sbjct: 535 KDAGFEPKCETYSAIIRSYSRHCLVPEAIDLFNEMKASGVEPNVIVYGILIDMFAETGNV 594

Query: 414 EEA---ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG 470
           +EA     L E   +S    P++   T+++  Y    +   A +L+  M+++    +++ 
Sbjct: 595 KEALHYSNLLEQSGIS----PNHIVLTSLIKAYSKFNSWKEAQDLYSRMNDMDGGPDIIA 650

Query: 471 CTCLIQCLGKARRIDDLVRVF 491
              ++    K   + +   +F
Sbjct: 651 SNAMLNLYAKLEMVTEAKEIF 671



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/279 (24%), Positives = 129/279 (46%), Gaps = 2/279 (0%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           +TY+ +I    +      A++ F  M   G+MPD  T++ +++++  SG   +   L+  
Sbjct: 265 VTYNVLIDLYGKAGKLKNALDMFLDMPAHGVMPDTYTFNTLINIFGFSGNSAQAEVLFAS 324

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
            V  G KPD   ++V+  +F   GD +G+     ++++ G+ P+ V Y  LL+ + +   
Sbjct: 325 MVIRGVKPDTKTYNVMMTVFASIGDLEGVLKYYCQIRNAGLHPDAVTYRILLQVLCERKM 384

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
              A  + + ++++G    E++L  ++K+Y       +A+  +E+    K  +    ++ 
Sbjct: 385 VHKAEDVIEGILKAGSFVHEQSLPVVMKMYVDLGLLDEAIAFFEKHCRGKG-VSSKNFSA 443

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
           ++++ A  GL EEAE +F   +  D  + D   Y  M+  YG     D    LFE M E 
Sbjct: 444 IMDVFAGRGLWEEAEHIFCSER-GDGNEKDIVEYNVMIKAYGQAKQYDRVSSLFESMEES 502

Query: 463 GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
           GV  +      LIQ            ++ G   D G +P
Sbjct: 503 GVPSDECTYNSLIQMFSFGGFPHRAKKLLGKMKDAGFEP 541



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 80/383 (20%), Positives = 160/383 (41%), Gaps = 37/383 (9%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           +T  +N  +    F       E L   MV   ++ D  TY+ ++T        +  ++++
Sbjct: 298 DTYTFNTLINIFGFSGNSAQAEVLFASMVIRGVKPDTKTYNVMMTVFASIGDLEGVLKYY 357

Query: 246 ERMYKTGLMPDEVTYSAILDV-----------------------------------YAKS 270
            ++   GL PD VTY  +L V                                   Y   
Sbjct: 358 CQIRNAGLHPDAVTYRILLQVLCERKMVHKAEDVIEGILKAGSFVHEQSLPVVMKMYVDL 417

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
           G ++E ++ +E+    G       FS +  +F   G ++   ++    +  G + ++V Y
Sbjct: 418 GLLDEAIAFFEKH-CRGKGVSSKNFSAIMDVFAGRGLWEEAEHIFCSERGDGNEKDIVEY 476

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
           N +++A G+A +     SLF+ M ESG+  DE T  +LI+++    +   A +L  +M++
Sbjct: 477 NVMIKAYGQAKQYDRVSSLFESMEESGVPSDECTYNSLIQMFSFGGFPHRAKKLLGKMKD 536

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
             +      Y+ ++   +   LV EA  LF +MK S   +P+   Y  +++++   GNV 
Sbjct: 537 AGFEPKCETYSAIIRSYSRHCLVPEAIDLFNEMKASG-VEPNVIVYGILIDMFAETGNVK 595

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
            A+     + + G++ N +  T LI+   K     +   ++    D    PD      +L
Sbjct: 596 EALHYSNLLEQSGISPNHIVLTSLIKAYSKFNSWKEAQDLYSRMNDMDGGPDIIASNAML 655

Query: 511 SVVSLCETSEDVGKVITCLQQAN 533
           ++ +  E   +  ++   L++ N
Sbjct: 656 NLYAKLEMVTEAKEIFDSLRRNN 678



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 78/363 (21%), Positives = 134/363 (36%), Gaps = 66/363 (18%)

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           P +   YN  ++   FG      ++L  +M     E    TYS II    R  L  EAI+
Sbjct: 505 PSDECTYNSLIQMFSFGGFPHRAKKLLGKMKDAGFEPKCETYSAIIRSYSRHCLVPEAID 564

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
            F  M  +G+ P+ + Y  ++D++A++G V+E L        SG  P+ I  + L K + 
Sbjct: 565 LFNEMKASGVEPNVIVYGILIDMFAETGNVKEALHYSNLLEQSGISPNHIVLTSLIKAYS 624

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD------------ 351
           +   +   + +   M  +   P+++  N +L    K      A+ +FD            
Sbjct: 625 KFNSWKEAQDLYSRMNDMDGGPDIIASNAMLNLYAKLEMVTEAKEIFDSLRRNNHADAVS 684

Query: 352 ----------------------EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMR 389
                                 ++ +SGL  D  +  A++  YG     +D  EL  +M 
Sbjct: 685 YTTMAYLYKSIGLLSESIRITHKLQKSGLLSDCASCNAVMACYGAKGNLRDCAELVHQMV 744

Query: 390 ENKWPMDF----ILYNTLLNMCADIGLVEEAERLFEDMKLS------------------- 426
               P D     ++++ L N       + + E  ++D K S                   
Sbjct: 745 VANIPPDASTFEMIFSLLKNGHVSTKEILQLESAYDDGKKSAKQAIIAFLFSVAGMHDAA 804

Query: 427 -DYCKP--------DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
            + C          D  +Y     +Y S   V+ A  LF  M +LG+  +   C  L  C
Sbjct: 805 LEICGKMLMPQSTLDACAYNVCFKVYASSRKVEKAFSLFMWMRDLGLKPDTSTCNHLATC 864

Query: 478 LGK 480
            G+
Sbjct: 865 YGR 867



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 105/236 (44%), Gaps = 22/236 (9%)

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
            M   G+ PDEV+ +  + +    G+ ++ L+L+       ++ D +    +      + 
Sbjct: 175 HMRTRGVAPDEVSMNTFVRILKDEGRHDDALALFHSWCDGRFEVDFLDLDCI------TV 228

Query: 307 DYDG-IRYVLQEM-------KSLGVQPN-------LVVYNTLLEAMGKAGKPGLARSLFD 351
           D DG ++++L +M        + GV P        +V YN L++  GKAGK   A  +F 
Sbjct: 229 DLDGPMQFLLADMYDDKIAAPAAGVAPERPRKPKLVVTYNVLIDLYGKAGKLKNALDMFL 288

Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411
           +M   G+ PD  T   LI I+G +  +  A  L+  M       D   YN ++ + A IG
Sbjct: 289 DMPAHGVMPDTYTFNTLINIFGFSGNSAQAEVLFASMVIRGVKPDTKTYNVMMTVFASIG 348

Query: 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
            +E   + +  ++ +    PD  +Y  +L +      V  A ++ E + + G  ++
Sbjct: 349 DLEGVLKYYCQIRNAGL-HPDAVTYRILLQVLCERKMVHKAEDVIEGILKAGSFVH 403



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 85/208 (40%), Gaps = 20/208 (9%)

Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411
            M   G+ PDE ++   ++I        DAL L+    + ++ +DF+  +     C  + 
Sbjct: 175 HMRTRGVAPDEVSMNTFVRILKDEGRHDDALALFHSWCDGRFEVDFLDLD-----CITVD 229

Query: 412 LVEEAERLFEDMKLSDYCKPDN-------------YSYTAMLNIYGSGGNVDNAIELFEE 458
           L    + L  DM       P                +Y  ++++YG  G + NA+++F +
Sbjct: 230 LDGPMQFLLADMYDDKIAAPAAGVAPERPRKPKLVVTYNVLIDLYGKAGKLKNALDMFLD 289

Query: 459 MSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCET 518
           M   GV  +      LI   G +        +F   + RGVKPD +    +++V +    
Sbjct: 290 MPAHGVMPDTYTFNTLINIFGFSGNSAQAEVLFASMVIRGVKPDTKTYNVMMTVFASIGD 349

Query: 519 SEDVGKVITCLQQA--NPKLVAFLNLIE 544
            E V K    ++ A  +P  V +  L++
Sbjct: 350 LEGVLKYYCQIRNAGLHPDAVTYRILLQ 377



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 86/213 (40%), Gaps = 18/213 (8%)

Query: 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA--------- 367
            M++ GV P+ V  NT +  +   G+   A +LF    +     D   L           
Sbjct: 175 HMRTRGVAPDEVSMNTFVRILKDEGRHDDALALFHSWCDGRFEVDFLDLDCITVDLDGPM 234

Query: 368 ---LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
              L  +Y     A  A    ER R+   P   + YN L+++    G ++ A  +F DM 
Sbjct: 235 QFLLADMYDDKIAAPAAGVAPERPRK---PKLVVTYNVLIDLYGKAGKLKNALDMFLDMP 291

Query: 425 LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484
            +    PD Y++  ++NI+G  GN   A  LF  M   GV  +      ++        +
Sbjct: 292 -AHGVMPDTYTFNTLINIFGFSGNSAQAEVLFASMVIRGVKPDTKTYNVMMTVFASIGDL 350

Query: 485 DDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCE 517
           + +++ +    + G+ PD      LL V  LCE
Sbjct: 351 EGVLKYYCQIRNAGLHPDAVTYRILLQV--LCE 381



 Score = 42.7 bits (99), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 39/194 (20%), Positives = 74/194 (38%), Gaps = 2/194 (1%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D ++Y+T+    K   L  E+I    ++ K+GL+ D  + +A++  Y   G + +   L 
Sbjct: 681 DAVSYTTMAYLYKSIGLLSESIRITHKLQKSGLLSDCASCNAVMACYGAKGNLRDCAELV 740

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
            + V +   PD   F ++  +      +   + +LQ   +            +      A
Sbjct: 741 HQMVVANIPPDASTFEMIFSLL--KNGHVSTKEILQLESAYDDGKKSAKQAIIAFLFSVA 798

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G    A  +  +M+    T D        K+Y  +R  + A  L+  MR+     D    
Sbjct: 799 GMHDAALEICGKMLMPQSTLDACAYNVCFKVYASSRKVEKAFSLFMWMRDLGLKPDTSTC 858

Query: 401 NTLLNMCADIGLVE 414
           N L      +G +E
Sbjct: 859 NHLATCYGRLGALE 872


>gi|410110131|gb|AFV61145.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           rehmannii]
          Length = 379

 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 83/365 (22%), Positives = 170/365 (46%), Gaps = 6/365 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K     P + + YN  +      + F+    L  EM +  +  +  +YS
Sbjct: 21  YSKAIAIFSRLKRSGFTP-DLVAYNAMINVFGKAKLFREARSLIGEMKTAGVMPNTSSYS 79

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY + G  +E   L+      
Sbjct: 80  TLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 139

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   ++ N+V YN+++   GK  +   A
Sbjct: 140 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKA 199

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R +   +D IL+ T++  
Sbjct: 200 NNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVA 259

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K     +PDN      ++I    G ++ A  +F +  + G   
Sbjct: 260 YERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVK 314

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           ++     +I  L K ++  ++V VF      G  PD  +   +L+     +  +    V 
Sbjct: 315 DITVFERMIHLLSKYKKYANVVEVFDKMRGLGYFPDSNVIAVVLNAYGKLQXFDKANDVY 374

Query: 527 TCLQQ 531
             +Q+
Sbjct: 375 MEMQE 379



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 134/261 (51%), Gaps = 1/261 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D + YS +I  +++   + +AI  F R+ ++G  PD V Y+A+++V+ K+    E  SL 
Sbjct: 4   DLVLYSNLIELSRKLCDYSKAIAIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLI 63

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
                +G  P+  ++S L  M+ E+  +     V  EM+ +    +L   N +++  G+ 
Sbjct: 64  GEMKTAGVMPNTSSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQL 123

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G    A  LF  M + G+ P+  +   L+++YG A    +A+ L+  M+      + + Y
Sbjct: 124 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 183

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           N+++ +       E+A  L ++M+ S   +P++ +Y+ +++I+G  G +D A  LF+++ 
Sbjct: 184 NSMMMIYGKTLEHEKANNLIQEMQ-SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLR 242

Query: 461 ELGVAINVMGCTCLIQCLGKA 481
             GV I+ +    +I    +A
Sbjct: 243 SSGVEIDQILFQTMIVAYERA 263



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 94/225 (41%), Gaps = 36/225 (16%)

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAK--- 379
           V  +LV+Y+ L+E   K      A ++F  +  SG TPD     A+I ++GKA+  +   
Sbjct: 1   VPGDLVLYSNLIELSRKLCDYSKAIAIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREAR 60

Query: 380 --------------------------------DALELWERMRENKWPMDFILYNTLLNMC 407
                                           +AL ++  MRE K  +D    N ++++ 
Sbjct: 61  SLIGEMKTAGVMPNTSSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVY 120

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
             +G+ +EA++LF  M+     +P+  SY  +L +YG       AI LF  M    +  N
Sbjct: 121 GQLGMAKEADKLFWGMRKMG-IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQN 179

Query: 468 VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSV 512
           V+    ++   GK    +    +      RG++P+      ++S+
Sbjct: 180 VVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISI 224



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 69/153 (45%), Gaps = 1/153 (0%)

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
           A+ ++ R++ + +  D + YN ++N+     L  EA  L  +MK +    P+  SY+ +L
Sbjct: 24  AIAIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKTAG-VMPNTSSYSTLL 82

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
            +Y        A+ +F EM E+   +++  C  +I   G+     +  ++F      G++
Sbjct: 83  TMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 142

Query: 501 PDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN 533
           P+      LL V    E   +   +   +Q+ N
Sbjct: 143 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKN 175


>gi|147767652|emb|CAN77908.1| hypothetical protein VITISV_033177 [Vitis vinifera]
          Length = 1563

 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 154/319 (48%), Gaps = 5/319 (1%)

Query: 173  FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            FFNW  +   F      Y   +      RQF L  QL + M +  +E+   T++ ++   
Sbjct: 1164 FFNWATNLEEFGHSPEPYMEMIDLAGKVRQFDLAWQLIDLMKTRNVEIPVETFTILVRRY 1223

Query: 233  KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
             +  L  EA+  F RM   G  PD++ +S ++   +K  +  E  S ++  +   ++PD 
Sbjct: 1224 VKAGLAAEAVHAFNRMEDYGCKPDKIAFSVVISSLSKKRRAIEAQSFFD-SLKDRFEPDV 1282

Query: 293  IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
            + ++ L   +  +G+      V  EMK  G+ PN+  Y+ +++A+ ++G+   A  +F E
Sbjct: 1283 VVYTSLVHGWCRAGNISEAERVFGEMKMAGIXPNVYTYSIVIDALCRSGQITRAHDVFSE 1342

Query: 353  MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL-NMCADIG 411
            M++ G  P+  T   L++++ KA   +  L+++ +M+    P D I YN L+ + C D  
Sbjct: 1343 MIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDAITYNFLIESHCRDDN 1402

Query: 412  LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC 471
            L EEA ++   +K    C  +  S+  +       G+V++A  +F +M +L    N +  
Sbjct: 1403 L-EEAVKILNSVKKG--CNLNASSFNPIFGCISKLGDVNSAHRMFAKMKDLKCRPNTVTY 1459

Query: 472  TCLIQCLGKARRIDDLVRV 490
              L++     +  D ++++
Sbjct: 1460 NILMRMFADKKSTDMVLKL 1478



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 106/216 (49%), Gaps = 4/216 (1%)

Query: 287  GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
            G  P+P  +  +  + G+   +D    ++  MK+  V+  +  +  L+    KAG    A
Sbjct: 1175 GHSPEP--YMEMIDLAGKVRQFDLAWQLIDLMKTRNVEIPVETFTILVRRYVKAGLAAEA 1232

Query: 347  RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
               F+ M + G  PD+   + +I    K R A +A   ++ +++   P D ++Y +L++ 
Sbjct: 1233 VHAFNRMEDYGCKPDKIAFSVVISSLSKKRRAIEAQSFFDSLKDRFEP-DVVVYTSLVHG 1291

Query: 407  CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
                G + EAER+F +MK++    P+ Y+Y+ +++     G +  A ++F EM ++G   
Sbjct: 1292 WCRAGNISEAERVFGEMKMAGI-XPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDP 1350

Query: 467  NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            N +    L++   KA R + +++V+      G  PD
Sbjct: 1351 NAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPD 1386



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 101/253 (39%), Gaps = 37/253 (14%)

Query: 207  EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
            E++  EM    I  +  TYS +I    R      A + F  M   G  P+ +T++ ++ V
Sbjct: 1302 ERVFGEMKMAGIXPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRV 1361

Query: 267  YAKSGKVEEVLSLYERGVASGWKPDPIAFSVL---------------------------- 298
            + K+G+ E+VL +Y +    G  PD I ++ L                            
Sbjct: 1362 HVKAGRTEKVLQVYNQMKRLGCPPDAITYNFLIESHCRDDNLEEAVKILNSVKKGCNLNA 1421

Query: 299  ---GKMFG---ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
                 +FG   + GD +    +  +MK L  +PN V YN L+          +   L  E
Sbjct: 1422 SSFNPIFGCISKLGDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFADKKSTDMVLKLRKE 1481

Query: 353  MVESGLTPDEKTLTALIKIY-GKARWAKDALELWERMRENKWPMDFI-LYNTLLNMCADI 410
            M E+ + P+  T   LI  + G   W  +A   ++ M E K     + +Y  +L      
Sbjct: 1482 MDENEIEPNANTYRVLISTFCGIGHW-NNAYSFFKEMIEEKCLRPSLPVYEMVLQQLRKA 1540

Query: 411  GLVEEAERLFEDM 423
            G +++ E L E M
Sbjct: 1541 GQLKKHEELVEKM 1553



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 91/206 (44%), Gaps = 3/206 (1%)

Query: 184  PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
            P    F N+    ++ GR  +++ Q+ N+M       D ITY+ +I    R +  +EA++
Sbjct: 1350 PNAITFNNLMRVHVKAGRTEKVL-QVYNQMKRLGCPPDAITYNFLIESHCRDDNLEEAVK 1408

Query: 244  WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
                + K G   +  +++ I    +K G V     ++ +      +P+ + +++L +MF 
Sbjct: 1409 ILNSV-KKGCNLNASSFNPIFGCISKLGDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFA 1467

Query: 304  ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG-LTPDE 362
            +    D +  + +EM    ++PN   Y  L+      G    A S F EM+E   L P  
Sbjct: 1468 DKKSTDMVLKLRKEMDENEIEPNANTYRVLISTFCGIGHWNNAYSFFKEMIEEKCLRPSL 1527

Query: 363  KTLTALIKIYGKARWAKDALELWERM 388
                 +++   KA   K   EL E+M
Sbjct: 1528 PVYEMVLQQLRKAGQLKKHEELVEKM 1553



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 40/177 (22%), Positives = 78/177 (44%), Gaps = 2/177 (1%)

Query: 184  PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
            P + I YN  ++S       +   ++ N  V     L+  +++ I  C  +    + A  
Sbjct: 1384 PPDAITYNFLIESHCRDDNLEEAVKILNS-VKKGCNLNASSFNPIFGCISKLGDVNSAHR 1442

Query: 244  WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
             F +M      P+ VTY+ ++ ++A     + VL L +    +  +P+   + VL   F 
Sbjct: 1443 MFAKMKDLKCRPNTVTYNILMRMFADKKSTDMVLKLRKEMDENEIEPNANTYRVLISTFC 1502

Query: 304  ESGDYDGIRYVLQEM-KSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
              G ++      +EM +   ++P+L VY  +L+ + KAG+      L ++MV  G  
Sbjct: 1503 GIGHWNNAYSFFKEMIEEKCLRPSLPVYEMVLQQLRKAGQLKKHEELVEKMVNRGFV 1559


>gi|75191658|sp|Q9M9X9.1|PPR18_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g06710, mitochondrial; Flags: Precursor
 gi|7523709|gb|AAF63148.1|AC011001_18 Hypothetical protein [Arabidopsis thaliana]
          Length = 987

 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 96/371 (25%), Positives = 159/371 (42%), Gaps = 46/371 (12%)

Query: 205 LIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAIL 264
           L E+  +EM++  + L+ I  S+   C      +++A      M   G +PD  TYS +L
Sbjct: 431 LAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVL 490

Query: 265 DVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQ 324
           +    + K+E    L+E     G   D   ++++   F ++G  +  R    EM+ +G  
Sbjct: 491 NYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCT 550

Query: 325 PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384
           PN+V Y  L+ A  KA K   A  LF+ M+  G  P+  T +ALI  + KA   + A ++
Sbjct: 551 PNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQI 610

Query: 385 WERM----------------RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428
           +ERM                 +N    + + Y  LL+       VEEA +L + M +   
Sbjct: 611 FERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEG- 669

Query: 429 CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLV 488
           C+P+   Y A+++     G +D A E+  EMSE G    +   + LI    K +R D   
Sbjct: 670 CEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLAS 729

Query: 489 RVFGVSIDRGVKPD--------DRLC------------------GCLLSVVSLCETSED- 521
           +V    ++    P+        D LC                  GC  +VV+     +  
Sbjct: 730 KVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGF 789

Query: 522 --VGKVITCLQ 530
             +GK+ TCL+
Sbjct: 790 GMIGKIETCLE 800



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 89/370 (24%), Positives = 160/370 (43%), Gaps = 53/370 (14%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           ++K++     +  Q   P +T  Y+  +  L    + +L   L  EM    +  D  TY+
Sbjct: 464 YEKAFSVIREMIGQGFIP-DTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYT 522

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDE----------------------------- 257
            ++    +  L ++A +WF  M + G  P+                              
Sbjct: 523 IMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSE 582

Query: 258 ------VTYSAILDVYAKSGKVEEVLSLYERGVAS----------------GWKPDPIAF 295
                 VTYSA++D + K+G+VE+   ++ER   S                  +P+ + +
Sbjct: 583 GCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTY 642

Query: 296 SVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVE 355
             L   F +S   +  R +L  M   G +PN +VY+ L++ + K GK   A+ +  EM E
Sbjct: 643 GALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSE 702

Query: 356 SGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEE 415
            G      T ++LI  Y K +    A ++  +M EN    + ++Y  +++    +G  +E
Sbjct: 703 HGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDE 762

Query: 416 AERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLI 475
           A +L + M+    C+P+  +YTAM++ +G  G ++  +EL E M   GVA N +    LI
Sbjct: 763 AYKLMQMME-EKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLI 821

Query: 476 QCLGKARRID 485
               K   +D
Sbjct: 822 DHCCKNGALD 831



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 140/331 (42%), Gaps = 59/331 (17%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV---YAKSGKVEEVL 277
           D + Y+ +I+     +LF+EA+++  RM  T  +P+ VTYS +L       + G+ + VL
Sbjct: 301 DTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVL 360

Query: 278 SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLL--- 334
           ++    +  G  P P  F+ L   +  SGD+     +L++M   G  P  VVYN L+   
Sbjct: 361 NMM---MMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSI 417

Query: 335 --------------------------------------EAMGKAGKPGLARSLFDEMVES 356
                                                   +  AGK   A S+  EM+  
Sbjct: 418 CGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQ 477

Query: 357 GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEA 416
           G  PD  T + ++     A   + A  L+E M+      D   Y  +++     GL+E+A
Sbjct: 478 GFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQA 537

Query: 417 ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
            + F +M+    C P+  +YTA+++ Y     V  A ELFE M   G   N++  + LI 
Sbjct: 538 RKWFNEMREVG-CTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALID 596

Query: 477 CLGKARRIDDLVRVFGVSIDRGVKPDDRLCG 507
              KA +++   ++F           +R+CG
Sbjct: 597 GHCKAGQVEKACQIF-----------ERMCG 616



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/304 (24%), Positives = 127/304 (41%), Gaps = 18/304 (5%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           FN ++     P   + Y   + +    ++     +L   M+S     + +TYS +I    
Sbjct: 541 FNEMREVGCTP-NVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHC 599

Query: 234 RCNLFDEAIEWFERMYKTGLMPDE----------------VTYSAILDVYAKSGKVEEVL 277
           +    ++A + FERM  +  +PD                 VTY A+LD + KS +VEE  
Sbjct: 600 KAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEAR 659

Query: 278 SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
            L +     G +P+ I +  L     + G  D  + V  EM   G    L  Y++L++  
Sbjct: 660 KLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRY 719

Query: 338 GKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDF 397
            K  +  LA  +  +M+E+   P+    T +I    K     +A +L + M E     + 
Sbjct: 720 FKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNV 779

Query: 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE 457
           + Y  +++    IG +E    L E M  S    P+  +Y  +++     G +D A  L E
Sbjct: 780 VTYTAMIDGFGMIGKIETCLELLERMG-SKGVAPNYVTYRVLIDHCCKNGALDVAHNLLE 838

Query: 458 EMSE 461
           EM +
Sbjct: 839 EMKQ 842



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 69/319 (21%), Positives = 125/319 (39%), Gaps = 43/319 (13%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           TY+ +I    + +  D A      M    L  D  T         K GK  E L+L E  
Sbjct: 237 TYNCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRCFAYSLCKVGKWREALTLVE-- 294

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
               + PD + ++ L     E+  ++     L  M++    PN+V Y+TLL       + 
Sbjct: 295 -TENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQL 353

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
           G  + + + M+  G  P  K   +L+  Y  +     A +L ++M +      +++YN L
Sbjct: 354 GRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNIL 413

Query: 404 L-NMCAD-----IGLVEEAERLFEDM----------KLSDYCK----------------- 430
           + ++C D       L++ AE+ + +M           +S + +                 
Sbjct: 414 IGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIRE 473

Query: 431 -------PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483
                  PD  +Y+ +LN   +   ++ A  LFEEM   G+  +V   T ++    KA  
Sbjct: 474 MIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGL 533

Query: 484 IDDLVRVFGVSIDRGVKPD 502
           I+   + F    + G  P+
Sbjct: 534 IEQARKWFNEMREVGCTPN 552


>gi|410110129|gb|AFV61144.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           pusilla]
          Length = 381

 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 82/366 (22%), Positives = 170/366 (46%), Gaps = 6/366 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K     P + + YN  +      + F+    L +EM +  +  +  +YS
Sbjct: 21  YSKAISIFSRLKRSGFTP-DLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYS 79

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY + G  +E   L+      
Sbjct: 80  TLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 139

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   ++ N+V YN+++   GK  +   A
Sbjct: 140 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKA 199

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R     +D IL+ T++  
Sbjct: 200 NNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSTGVEIDQILFQTMIVX 259

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GL+  A+RL  ++K     +PDN      ++I    G ++ A  +F +  + G   
Sbjct: 260 YERAGLIAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVK 314

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           ++     +I  L K ++  ++V VF      G  PD  +   +L+     +  +    V 
Sbjct: 315 DITVFERMIHLLSKYKKYANVVEVFDKMRGLGYFPDSNVIAVVLNAYGKLQEFDKANDVY 374

Query: 527 TCLQQA 532
             +Q+ 
Sbjct: 375 MEMQEV 380



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 129/247 (52%), Gaps = 1/247 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D + YS +I  +++   + +AI  F R+ ++G  PD V Y+A+++V+ K+    E  SL 
Sbjct: 4   DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLI 63

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
                +G  P+  ++S L  M+ E+  +     V  EM+ +    +L   N +++  G+ 
Sbjct: 64  SEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQL 123

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G    A  LF  M + G+ P+  +   L+++YG A    +A+ L+  M+      + + Y
Sbjct: 124 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 183

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           N+++ +       E+A  L ++M+ S   +P++ +Y+ +++I+G  G +D A  LF+++ 
Sbjct: 184 NSMMMIYGKTLEHEKANNLIQEMQ-SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLR 242

Query: 461 ELGVAIN 467
             GV I+
Sbjct: 243 STGVEID 249



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 94/225 (41%), Gaps = 36/225 (16%)

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAK--- 379
           V  +LV+Y+ L+E   K      A S+F  +  SG TPD     A+I ++GKA+  +   
Sbjct: 1   VPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREAR 60

Query: 380 --------------------------------DALELWERMRENKWPMDFILYNTLLNMC 407
                                           +AL ++  MRE K  +D    N ++++ 
Sbjct: 61  SLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVY 120

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
             +G+ +EA++LF  M+     +P+  SY  +L +YG       AI LF  M    +  N
Sbjct: 121 GQLGMAKEADKLFWGMRKMG-IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQN 179

Query: 468 VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSV 512
           V+    ++   GK    +    +      RG++P+      ++S+
Sbjct: 180 VVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISI 224



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/242 (21%), Positives = 100/242 (41%), Gaps = 36/242 (14%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGR--QFQLI 206
           P+  +    L +    + + ++   F  ++ +N+     + YN  M  + +G+  + +  
Sbjct: 143 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNI-EQNVVTYNSMM--MIYGKTLEHEKA 199

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
             L  EM S  IE ++ITYSTII+   +    D A   F+++  TG+  D++ +  ++  
Sbjct: 200 NNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSTGVEIDQILFQTMIVX 259

Query: 267 Y-------------------------------AKSGKVEEVLSLYERGVASGWKPDPIAF 295
           Y                               A +G++EE   ++ + + +G   D   F
Sbjct: 260 YERAGLIAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVF 319

Query: 296 SVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVE 355
             +  +  +   Y  +  V  +M+ LG  P+  V   +L A GK  +   A  ++ EM E
Sbjct: 320 ERMIHLLSKYKKYANVVEVFDKMRGLGYFPDSNVIAVVLNAYGKLQEFDKANDVYMEMQE 379

Query: 356 SG 357
            G
Sbjct: 380 VG 381



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 69/153 (45%), Gaps = 1/153 (0%)

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
           A+ ++ R++ + +  D + YN ++N+     L  EA  L  +MK +    P+  SY+ +L
Sbjct: 24  AISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAG-VMPNTTSYSTLL 82

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
            +Y        A+ +F EM E+   +++  C  +I   G+     +  ++F      G++
Sbjct: 83  TMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 142

Query: 501 PDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN 533
           P+      LL V    E   +   +   +Q+ N
Sbjct: 143 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKN 175


>gi|302821481|ref|XP_002992403.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
 gi|300139819|gb|EFJ06553.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
          Length = 448

 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 141/291 (48%), Gaps = 1/291 (0%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L N+M+ N    D  TY+ +I    +     +  +  + M K G  P+ +TY+ ++D   
Sbjct: 159 LFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLV 218

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           KSGK  +  +L +  +    KP    F+++  MF + G  D    + Q M   G  P++ 
Sbjct: 219 KSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIY 278

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            YN ++    +A +   AR L + M E+G  PD  T  +++    KA    +A E++E +
Sbjct: 279 TYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVL 338

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
           R   + +D +  +TL++       +++AE+L  +M+ +    PD  +YT +++ +     
Sbjct: 339 RNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGS-APDVVAYTILIHGFCKADQ 397

Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGV 499
           +D ++  F EM + G    V+  + +I  L K+ R+ D   +    ++RGV
Sbjct: 398 LDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGV 448



 Score =  115 bits (288), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 90/339 (26%), Positives = 154/339 (45%), Gaps = 20/339 (5%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
           TI  +   KS R      ++E    +M+      + +TY+T+I    +    DEA+  F 
Sbjct: 106 TILVDALCKSARISDASLILE----DMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFN 161

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
           +M +    PD  TY+ ++D Y K  + ++   L +  V  G +P+ I ++ L     +SG
Sbjct: 162 QMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSG 221

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
            Y     + Q M     +P+   +N +++   K G+  LA  LF  M + G  PD  T  
Sbjct: 222 KYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYN 281

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
            +I    +A    DA +L ERM E   P D + YN++++       V+EA  ++E ++  
Sbjct: 282 IMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNG 341

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
            Y   D  + + +++       +D+A +L  EM   G A +V+  T LI    KA ++D 
Sbjct: 342 GY-FLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDK 400

Query: 487 LVRVFGVSIDRGVKPD--------DRLC-------GCLL 510
            +  F   +D+G  P         D+LC       GC+L
Sbjct: 401 SLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCML 439



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 93/364 (25%), Positives = 168/364 (46%), Gaps = 10/364 (2%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           ++I Y+  +      R FQ   +L +EM    I   N  Y+TII         D A+  +
Sbjct: 32  DSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHY 91

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
             M +    P  +TY+ ++D   KS ++ +   + E  + +G  P+ + ++ L   F + 
Sbjct: 92  RDMQRH-CAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKL 150

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G+ D    +  +M      P++  YN L++   K  +P     L  EMV+ G  P+  T 
Sbjct: 151 GNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITY 210

Query: 366 TALIKIYGKARWAKDALELWERM-RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
             L+    K+    DA  L + M R +  P  F  +N +++M   +G ++ A  LF+ M 
Sbjct: 211 NTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFT-FNLMIDMFCKVGQLDLAYELFQLMT 269

Query: 425 LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484
               C PD Y+Y  M++       +D+A +L E M+E G   +V+    ++  L KA ++
Sbjct: 270 -DRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQV 328

Query: 485 DDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETS--EDVGKVITCLQQ--ANPKLVAFL 540
           D+   V+ V  + G   D   C  L+    LC++   +D  K++  +++  + P +VA+ 
Sbjct: 329 DEAYEVYEVLRNGGYFLDVVTCSTLID--GLCKSRRLDDAEKLLREMERNGSAPDVVAYT 386

Query: 541 NLIE 544
            LI 
Sbjct: 387 ILIH 390



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 130/298 (43%), Gaps = 37/298 (12%)

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKS----------------------------- 270
           EA + F+        PD +TYS +++ + K+                             
Sbjct: 16  EAYDLFKNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTII 75

Query: 271 ------GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQ 324
                 G+V+  L  Y R +     P  I +++L     +S        +L++M   G  
Sbjct: 76  KGLCDNGRVDSALVHY-RDMQRHCAPSVITYTILVDALCKSARISDASLILEDMIEAGCA 134

Query: 325 PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384
           PN+V YNTL+    K G    A  LF++M+E+  +PD  T   LI  Y K    +D  +L
Sbjct: 135 PNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKL 194

Query: 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYG 444
            + M +     +FI YNTL++     G   +A  L + M   D CKP ++++  M++++ 
Sbjct: 195 LQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRD-CKPSHFTFNLMIDMFC 253

Query: 445 SGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
             G +D A ELF+ M++ G   ++     +I    +A RIDD  ++     + G  PD
Sbjct: 254 KVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPD 311



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 112/241 (46%), Gaps = 2/241 (0%)

Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
           + +L  + +  K +E   L++  +     PD I +S L   F ++ D+     +L EM+ 
Sbjct: 2   NCLLSAFVRKKKAQEAYDLFKNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEK 61

Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380
            G+ P+  VYNT+++ +   G+   A   + +M +    P   T T L+    K+    D
Sbjct: 62  RGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDM-QRHCAPSVITYTILVDALCKSARISD 120

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
           A  + E M E     + + YNTL+N    +G ++EA  LF  M L + C PD ++Y  ++
Sbjct: 121 ASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQM-LENSCSPDVFTYNILI 179

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
           + Y       +  +L +EM + G   N +    L+  L K+ +  D   +  + + R  K
Sbjct: 180 DGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCK 239

Query: 501 P 501
           P
Sbjct: 240 P 240



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 89/189 (47%)

Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS 261
           Q  L  +L   M       D  TY+ +I+ A R N  D+A +  ERM + G  PD VTY+
Sbjct: 257 QLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYN 316

Query: 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
           +I+    K+ +V+E   +YE     G+  D +  S L     +S   D    +L+EM+  
Sbjct: 317 SIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERN 376

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
           G  P++V Y  L+    KA +   + + F EM++ G  P   T + +I    K+   +D 
Sbjct: 377 GSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDG 436

Query: 382 LELWERMRE 390
             L + M E
Sbjct: 437 CMLLKTMLE 445



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 83/189 (43%), Gaps = 1/189 (0%)

Query: 170 SYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTII 229
           +Y  F  +  +   P +   YN+ +       +     QL   M       D +TY++I+
Sbjct: 261 AYELFQLMTDRGCLP-DIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIV 319

Query: 230 TCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWK 289
           +   + +  DEA E +E +   G   D VT S ++D   KS ++++   L      +G  
Sbjct: 320 SGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSA 379

Query: 290 PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSL 349
           PD +A+++L   F ++   D       EM   G  P ++ Y+ +++ + K+ +      L
Sbjct: 380 PDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCML 439

Query: 350 FDEMVESGL 358
              M+E G+
Sbjct: 440 LKTMLERGV 448


>gi|297836911|ref|XP_002886337.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
 gi|297332178|gb|EFH62596.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
          Length = 1059

 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 88/347 (25%), Positives = 170/347 (48%), Gaps = 12/347 (3%)

Query: 161 LNSLKFWQKSYFFFNWIKSQNLFPMETIF-YNVTMKSLRFGRQFQLIEQLANEMVSNEIE 219
           L+S++F      F   ++SQ   P+ ++  +   + ++   R+++ +   + +M    I 
Sbjct: 41  LHSIRFEDALDLFLEMVQSQ---PLPSVVDFTRLLTAIANLRRYETVIYFSQQMELFGIS 97

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
            D  +++ +I C  RC+    A+    +M K G  P  VT+ ++L  +    ++ +  SL
Sbjct: 98  HDLYSFTILIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFSL 157

Query: 280 YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG-VQPNLVVYNTLLEAMG 338
               V SG++P+ + ++ L     ++GD +    +L EM+  G +  +LV YNTLL  + 
Sbjct: 158 VASMVKSGYEPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLC 217

Query: 339 KAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFI 398
            +G+   A  +  +M +  + PD  T TALI  + K     +A EL+++M ++    + +
Sbjct: 218 YSGEWRQAARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTV 277

Query: 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458
            YN+L+N     G +  A++ F D+  S  C P+  +Y  ++N +     V++ ++LF+ 
Sbjct: 278 TYNSLINGLCMHGRLYHAKKTF-DLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQR 336

Query: 459 MSELGVAINVMGCTCLIQ--C-LGKARRIDDLVRVFGVSIDRGVKPD 502
           M   G+  +      LI   C +GK R   D   +F   +  GV PD
Sbjct: 337 MYREGLVGDTFTYNTLIHGYCQVGKLRVAKD---IFSWMVSCGVTPD 380



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 81/343 (23%), Positives = 166/343 (48%), Gaps = 5/343 (1%)

Query: 161 LNSLKFWQKSYFFFNWIKSQNLFPMETIF-YNVTMKSLRFGRQFQLIEQLANEMVSNEIE 219
           L+ +KF      F   ++S+   P+ +I  +   + ++    +F ++  L ++M +  I 
Sbjct: 591 LHCIKFDDAFGLFCEMLQSR---PIPSIVDFTRVLTAIAKMNKFDIVIYLFHKMENLGIS 647

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
            D  +++ +I C  RC+ F  A+    +M K G  P  VT  ++L+ + +  + +E +SL
Sbjct: 648 HDLYSFTILIHCFCRCSRFSLALALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSL 707

Query: 280 YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
            +     G +P+ + ++ +     ++ D +    +   M+  G+  + V YNTL+  +  
Sbjct: 708 VDSMAELGLEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCN 767

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
           +G+   A  L  +MV+  + P+    TALI  + K     +A  L++ M       + + 
Sbjct: 768 SGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILT 827

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           YN+L+N     G + +A+ +F D+ +S  C PD  +Y  ++  +     V++ ++LF EM
Sbjct: 828 YNSLINGFCIQGRLGDAKHMF-DLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEM 886

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           +  G+  +      LI    +A +++   +VF   +D GV PD
Sbjct: 887 THQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVPPD 929



 Score =  115 bits (289), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 146/303 (48%), Gaps = 1/303 (0%)

Query: 200 GRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVT 259
           G +FQ    L + M    +E + + Y+T+I    +    + A+E F  M K G++ D VT
Sbjct: 698 GNRFQEAVSLVDSMAELGLEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVT 757

Query: 260 YSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMK 319
           Y+ ++     SG+  +   L    V     P+ I F+ L   F + G+    + + +EM 
Sbjct: 758 YNTLISGLCNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEMI 817

Query: 320 SLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAK 379
              V PN++ YN+L+      G+ G A+ +FD MV  G  PD  T   LI  + K++  +
Sbjct: 818 RRSVHPNILTYNSLINGFCIQGRLGDAKHMFDLMVSKGCFPDVVTYNTLITGFCKSKRVE 877

Query: 380 DALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAM 439
           D ++L+  M       D   YNTL++     G +  A+++F  M +     PD  +Y  +
Sbjct: 878 DGMKLFCEMTHQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRM-VDCGVPPDIVTYNIL 936

Query: 440 LNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGV 499
           L+   + G ++ A+ + E++ +  + ++++    +IQ + +  ++ +   +F     +GV
Sbjct: 937 LDCLCNNGKIEKALVMVEDLQKNQMDVDIITYNIIIQGMCRNDKVKEAWCLFRSLTRKGV 996

Query: 500 KPD 502
           K D
Sbjct: 997 KLD 999



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 137/297 (46%), Gaps = 2/297 (0%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTG-LMPDEVTYSAILDVY 267
           L   MV +  E + + Y+T+I C  +    + A+E    M K G L  D VTY+ +L   
Sbjct: 157 LVASMVKSGYEPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGL 216

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
             SG+  +   +          PD   F+ L   F + G+ D  + + ++M    + PN 
Sbjct: 217 CYSGEWRQAARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNT 276

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
           V YN+L+  +   G+   A+  FD M   G  P+  T   LI  + K+R  +D ++L++R
Sbjct: 277 VTYNSLINGLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQR 336

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           M       D   YNTL++    +G +  A+ +F  M +S    PD  ++  +L+     G
Sbjct: 337 MYREGLVGDTFTYNTLIHGYCQVGKLRVAKDIFSWM-VSCGVTPDIITHCILLHGLCVNG 395

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR 504
            + +A+  F +M      + ++    +I  L KA ++++   +F      GVKPD R
Sbjct: 396 EIGSAMVKFNDMRSGEKYLGIVAYNIMIHGLCKADKVEEAWELFCRLPVEGVKPDAR 452



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 152/354 (42%), Gaps = 8/354 (2%)

Query: 140  AFLRAITEIPHQPTRENALLILNSL---KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKS 196
            A L  + ++  QP+      +LN       +Q++    + +    L P   + YN  +  
Sbjct: 671  ALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMAELGLEP-NVVIYNTVING 729

Query: 197  LRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPD 256
            L   R      ++   M    I  D +TY+T+I+       + +A      M K  + P+
Sbjct: 730  LCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDAARLLRDMVKRKIDPN 789

Query: 257  EVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQ 316
             + ++A++D + K G + E  +LY+  +     P+ + ++ L   F   G     +++  
Sbjct: 790  VIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCIQGRLGDAKHMFD 849

Query: 317  EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
             M S G  P++V YNTL+    K+ +      LF EM   GL  D  T   LI  Y +A 
Sbjct: 850  LMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLIHGYCQAG 909

Query: 377  WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY 436
                A +++ RM +   P D + YN LL+   + G +E+A  + ED++  +    D  +Y
Sbjct: 910  KLNVAQKVFNRMVDCGVPPDIVTYNILLDCLCNNGKIEKALVMVEDLQ-KNQMDVDIITY 968

Query: 437  TAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL---GKARRIDDL 487
              ++        V  A  LF  ++  GV ++ +    +I  L   G  R  D L
Sbjct: 969  NIIIQGMCRNDKVKEAWCLFRSLTRKGVKLDAIAYITMISGLCRNGLRREADKL 1022



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 135/294 (45%), Gaps = 5/294 (1%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
             N ++ +     + + YN  +  L +  +++   ++  +M    I  D  T++ +I   
Sbjct: 192 LLNEMEKKGRLAADLVTYNTLLTGLCYSGEWRQAARILRDMTKRRINPDVFTFTALIDAF 251

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +    DEA E +++M ++ + P+ VTY+++++     G++      ++   + G  P+ 
Sbjct: 252 VKQGNLDEAQELYKQMLQSSIGPNTVTYNSLINGLCMHGRLYHAKKTFDLMASKGCFPNV 311

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           + ++ L   F +S   +    + Q M   G+  +   YNTL+    + GK  +A+ +F  
Sbjct: 312 VTYNTLINGFCKSRRVEDGMKLFQRMYREGLVGDTFTYNTLIHGYCQVGKLRVAKDIFSW 371

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAK--DALELWERMRENKWPMDFILYNTLLNMCADI 410
           MV  G+TPD   +T  I ++G     +   A+  +  MR  +  +  + YN +++     
Sbjct: 372 MVSCGVTPD--IITHCILLHGLCVNGEIGSAMVKFNDMRSGEKYLGIVAYNIMIHGLCKA 429

Query: 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
             VEEA  LF  + +    KPD  +YT M+      G    A ELF  M E G+
Sbjct: 430 DKVEEAWELFCRLPVEGV-KPDARTYTIMILGLCKNGPRREADELFRRMKEDGI 482



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 112/240 (46%), Gaps = 4/240 (1%)

Query: 187  TIFYNVTMKSLRFGRQFQLIE--QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEW 244
             IF+   + +  F ++  L+E   L  EM+   +  + +TY+++I          +A   
Sbjct: 790  VIFFTALIDT--FVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCIQGRLGDAKHM 847

Query: 245  FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
            F+ M   G  PD VTY+ ++  + KS +VE+ + L+      G   D   ++ L   + +
Sbjct: 848  FDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLIHGYCQ 907

Query: 305  SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
            +G  +  + V   M   GV P++V YN LL+ +   GK   A  + +++ ++ +  D  T
Sbjct: 908  AGKLNVAQKVFNRMVDCGVPPDIVTYNILLDCLCNNGKIEKALVMVEDLQKNQMDVDIIT 967

Query: 365  LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
               +I+   +    K+A  L+  +      +D I Y T+++     GL  EA++L   MK
Sbjct: 968  YNIIIQGMCRNDKVKEAWCLFRSLTRKGVKLDAIAYITMISGLCRNGLRREADKLCTRMK 1027



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 91/187 (48%)

Query: 207  EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
            + + + MVS     D +TY+T+IT   +    ++ ++ F  M   GL+ D  TY+ ++  
Sbjct: 845  KHMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLIHG 904

Query: 267  YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
            Y ++GK+     ++ R V  G  PD + +++L      +G  +    ++++++   +  +
Sbjct: 905  YCQAGKLNVAQKVFNRMVDCGVPPDIVTYNILLDCLCNNGKIEKALVMVEDLQKNQMDVD 964

Query: 327  LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
            ++ YN +++ M +  K   A  LF  +   G+  D      +I    +    ++A +L  
Sbjct: 965  IITYNIIIQGMCRNDKVKEAWCLFRSLTRKGVKLDAIAYITMISGLCRNGLRREADKLCT 1024

Query: 387  RMRENKW 393
            RM+E+ +
Sbjct: 1025 RMKEDGF 1031



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 58/271 (21%), Positives = 111/271 (40%), Gaps = 35/271 (12%)

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
           +  S + E+ L L+   V S   P  + F+ L         Y+ + Y  Q+M+  G+  +
Sbjct: 40  FLHSIRFEDALDLFLEMVQSQPLPSVVDFTRLLTAIANLRRYETVIYFSQQMELFGISHD 99

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
           L  +  L+    +  +  LA S+  +M++ G  P   T  +L+  +       DA  L  
Sbjct: 100 LYSFTILIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFSLVA 159

Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK---------------LSDYC-- 429
            M ++ +  + ++YNTL++     G V  A  L  +M+               L+  C  
Sbjct: 160 SMVKSGYEPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYS 219

Query: 430 ------------------KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC 471
                              PD +++TA+++ +   GN+D A EL+++M +  +  N +  
Sbjct: 220 GEWRQAARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTY 279

Query: 472 TCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
             LI  L    R+    + F +   +G  P+
Sbjct: 280 NSLINGLCMHGRLYHAKKTFDLMASKGCFPN 310


>gi|2894600|emb|CAA17134.1| putative protein [Arabidopsis thaliana]
 gi|7268543|emb|CAB78793.1| putative protein [Arabidopsis thaliana]
          Length = 1208

 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 84/344 (24%), Positives = 160/344 (46%), Gaps = 33/344 (9%)

Query: 181 NLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDE 240
           N   + T   N+ + SL   R+ +  E L  + +   ++ D +TY+T+I+   R    +E
Sbjct: 7   NFTGLSTRLLNICVDSLCKFRKLEKAESLIIDGIRLGVDPDVVTYNTLISGYCRFVGIEE 66

Query: 241 AIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGK 300
           A     RM   G+ PD  TY++++   A+   ++ VL L++  +  G  PD  +++ L  
Sbjct: 67  AYAVTRRMRDAGIRPDVATYNSLIAGAARRLMLDHVLYLFDEMLEWGIYPDLWSYNTLMC 126

Query: 301 MFGESGDYD-GIRYVLQEMKSLGVQPN----------------LVVYNTLLEAMGKAGKP 343
            + + G ++   R + ++++  G+ P+                L+ YN L+  + K+ + 
Sbjct: 127 CYFKLGKHEEAFRVLYKDLQLAGLNPDNALELFKEMQSRFKPELMTYNILINGLCKSRRV 186

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
           G A+ +  E+ +SG TP+  T T ++K+Y K R  +  L+L+  M+   +  D   Y  +
Sbjct: 187 GTAKWMLTELKKSGYTPNAVTYTTILKLYFKTRRIRRGLQLFLEMKREGYTYDGYAYFAV 246

Query: 404 LNMCADIGLVEEAERLFEDMKLSD----------------YCKPDNYSYTAMLNIYGSGG 447
           ++     G  +EA    +++   D                  K D Y++T ++N     G
Sbjct: 247 VSALIKTGRTKEAYEYMQELVRKDGNLDAVDDLLGEIERRGMKADEYTHTIIVNGLLRTG 306

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
               A E F  M E+G+ +N++ C CL+  L KA  +D  +R F
Sbjct: 307 QTRRAEEHFVSMGEMGIGLNLVTCNCLVDGLCKAGHVDRAMRYF 350



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/234 (18%), Positives = 96/234 (41%), Gaps = 21/234 (8%)

Query: 180 QNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFD 239
           Q+ F  E + YN+ +  L   R+    + +  E+  +    + +TY+TI+    +     
Sbjct: 163 QSRFKPELMTYNILINGLCKSRRVGTAKWMLTELKKSGYTPNAVTYTTILKLYFKTRRIR 222

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
             ++ F  M + G   D   Y A++    K+G+ +E                  A+  + 
Sbjct: 223 RGLQLFLEMKREGYTYDGYAYFAVVSALIKTGRTKE------------------AYEYMQ 264

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
           ++  + G+ D +  +L E++  G++ +   +  ++  + + G+   A   F  M E G+ 
Sbjct: 265 ELVRKDGNLDAVDDLLGEIERRGMKADEYTHTIIVNGLLRTGQTRRAEEHFVSMGEMGIG 324

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
            +  T   L+    KA     A+  +E M       ++   + + N+C D+  V
Sbjct: 325 LNLVTCNCLVDGLCKAGHVDRAMRYFESMEVKD---EYTYTSVVHNLCKDMRFV 375


>gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 91/364 (25%), Positives = 169/364 (46%), Gaps = 12/364 (3%)

Query: 161 LNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIE 219
           L  +K + + ++ +N ++   + P +    N+ +  L    R  + +  +A  +    I 
Sbjct: 106 LAKIKHYSQVFYLYNQMRLSGISP-DCCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIP 164

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
            D +TY+T+I      +   +A   F RM K G  P+ +TY  ++    ++G +   L L
Sbjct: 165 -DIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKL 223

Query: 280 YERGV------ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTL 333
           ++  +         +KP  I++S++     +    D  R + +EMK  G+ P ++ Y +L
Sbjct: 224 HQEMLNDSSLYGINFKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSL 283

Query: 334 LEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKW 393
           +      GK   A+ LF+EMV  G+ P+  T   LI +  K     +A +L E M +   
Sbjct: 284 IHGFCCGGKWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGI 343

Query: 394 PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAI 453
             + + YN+L+     +G +  A  LF  M  S  C+PD   YT ++N Y     V+ A+
Sbjct: 344 VPNLLTYNSLIEGFCLVGDLNSARELFVSMP-SKGCEPDVICYTVLINGYCKTSKVEEAM 402

Query: 454 ELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVV 513
           +L+  M ++G   +V     L+  L +  ++ D  ++FGV    G+  D  + G  L+  
Sbjct: 403 KLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLN-- 460

Query: 514 SLCE 517
            LC+
Sbjct: 461 GLCK 464



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 96/341 (28%), Positives = 154/341 (45%), Gaps = 10/341 (2%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNE------IELDN 222
           K+   F  ++     P   I Y   MK L       +  +L  EM+++        +   
Sbjct: 184 KAALLFTRMQKLGCTP-NAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVV 242

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           I+YS II    +    DEA + FE M   G+ P  ++Y++++  +   GK EE   L+  
Sbjct: 243 ISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNE 302

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
            V  G +P+ + F+VL  +  + G     + +L+ M   G+ PNL+ YN+L+E     G 
Sbjct: 303 MVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGD 362

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
              AR LF  M   G  PD    T LI  Y K    ++A++L+  M +     D   Y  
Sbjct: 363 LNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGA 422

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKP-DNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461
           LL      G V +A++LF  MK+  Y  P D Y Y   LN     G +  A+ELF ++  
Sbjct: 423 LLTGLFQGGKVGDAKKLFGVMKV--YGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKS 480

Query: 462 LGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
             + +++    CLI  L KA +++    +F       ++PD
Sbjct: 481 YNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPD 521



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 89/357 (24%), Positives = 154/357 (43%), Gaps = 40/357 (11%)

Query: 183 FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTII---TCAKRCNLFD 239
           F    I Y++ + +L   R+      L  EM    +    I+Y+++I    C  +   ++
Sbjct: 238 FKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGK---WE 294

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           EA   F  M   G+ P+ VT++ ++DV  K GKV E   L E  +  G  P+ + ++ L 
Sbjct: 295 EAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLI 354

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
           + F   GD +  R +   M S G +P+++ Y  L+    K  K   A  L++ M++ G  
Sbjct: 355 EGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKR 414

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
           PD KT  AL+    +     DA +L+  M+    P D  +Y   LN     G + EA  L
Sbjct: 415 PDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMEL 474

Query: 420 FEDMK--------------LSDYCK--------------------PDNYSYTAMLNIYGS 445
           F  +K              +   CK                    PD  +Y  M++ +  
Sbjct: 475 FNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCR 534

Query: 446 GGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           GG V  A  LF++M + G   + +    LI+   ++++++ +V +  + + R V  D
Sbjct: 535 GGQVVKANILFQKMEKNGCTPDKITYATLIRGFFESKKLEKVVELLHMMVQRDVSLD 591



 Score =  102 bits (254), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 142/304 (46%), Gaps = 6/304 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIE--QLANEMVSNEIELDNIT 224
           W+++   FN + +Q + P   + +NV +  L   ++ ++IE   L   M+   I  + +T
Sbjct: 293 WEEAKRLFNEMVNQGVQP-NVVTFNVLIDVL--CKEGKVIEAKDLLEVMIQRGIVPNLLT 349

Query: 225 YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
           Y+++I         + A E F  M   G  PD + Y+ +++ Y K+ KVEE + LY   +
Sbjct: 350 YNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGML 409

Query: 285 ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344
             G +PD   +  L     + G     + +   MK  G+  +L +Y   L  + K G   
Sbjct: 410 QVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLF 469

Query: 345 LARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
            A  LF+++    +  D +    LI    KA   + A EL+E++ + +   D + YN ++
Sbjct: 470 EAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMI 529

Query: 405 NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
           +     G V +A  LF+ M+  + C PD  +Y  ++  +     ++  +EL   M +  V
Sbjct: 530 HEFCRGGQVVKANILFQKME-KNGCTPDKITYATLIRGFFESKKLEKVVELLHMMVQRDV 588

Query: 465 AINV 468
           +++V
Sbjct: 589 SLDV 592



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 120/269 (44%), Gaps = 7/269 (2%)

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           +A ++F  M  +   P   +++ +L   AK     +V  LY +   SG  PD    ++L 
Sbjct: 79  QAFQFFHLMMYSNPTPPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLNILL 138

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
                         V+  +   G  P++V Y TL++ +    +   A  LF  M + G T
Sbjct: 139 NCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCT 198

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENK--WPMDF----ILYNTLLNMCADIGLV 413
           P+  T   L+K   +      AL+L + M  +   + ++F    I Y+ +++        
Sbjct: 199 PNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRRE 258

Query: 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTC 473
           +EA  LFE+MK+     P   SYT++++ +  GG  + A  LF EM   GV  NV+    
Sbjct: 259 DEARDLFEEMKVQGM-TPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGVQPNVVTFNV 317

Query: 474 LIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           LI  L K  ++ +   +  V I RG+ P+
Sbjct: 318 LIDVLCKEGKVIEAKDLLEVMIQRGIVPN 346



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 120/268 (44%), Gaps = 17/268 (6%)

Query: 268 AKSGKVE--EVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325
            K+G +   +    +   + S   P   +F+ L     +   Y  + Y+  +M+  G+ P
Sbjct: 70  CKTGNITATQAFQFFHLMMYSNPTPPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISP 129

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK-IYGKARWAKDALEL 384
           +    N LL  +    + G   ++   ++  G  PD  T T LIK +  + R +K AL L
Sbjct: 130 DCCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAAL-L 188

Query: 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC------KPDNYSYTA 438
           + RM++     + I Y TL+      G +  A +L ++M L+D        KP   SY+ 
Sbjct: 189 FTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEM-LNDSSLYGINFKPVVISYSI 247

Query: 439 MLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRG 498
           +++        D A +LFEEM   G+   V+  T LI       + ++  R+F   +++G
Sbjct: 248 IIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQG 307

Query: 499 VKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           V+P+      L+ V  LC+     GKVI
Sbjct: 308 VQPNVVTFNVLIDV--LCKE----GKVI 329



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 62/135 (45%), Gaps = 2/135 (1%)

Query: 231 CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
           C   C LF EA+E F ++    +  D   ++ ++D   K+GK+E    L+E+      +P
Sbjct: 463 CKNGC-LF-EAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQP 520

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
           D + ++++   F   G       + Q+M+  G  P+ + Y TL+    ++ K      L 
Sbjct: 521 DVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIRGFFESKKLEKVVELL 580

Query: 351 DEMVESGLTPDEKTL 365
             MV+  ++ D   L
Sbjct: 581 HMMVQRDVSLDVNIL 595



 Score = 39.7 bits (91), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 62/283 (21%), Positives = 115/283 (40%), Gaps = 16/283 (5%)

Query: 346 ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405
           A   F  M+ S  TP   + T L+    K +       L+ +MR +    D    N LLN
Sbjct: 80  AFQFFHLMMYSNPTPPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLNILLN 139

Query: 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
              ++  V E   +   +    Y  PD  +YT ++        +  A  LF  M +LG  
Sbjct: 140 CLCNVNRVGEGLAVMAGILRRGYI-PDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCT 198

Query: 466 INVMGCTCLIQCLGKARRIDDLVRVFGVSID----RGVKPDDRLCGCLLSVVSLC-ETSE 520
            N +    L++ L +   I   +++    ++     G+     +    + + +LC +  E
Sbjct: 199 PNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRRE 258

Query: 521 DVGKVI---TCLQQANPKLVAFLNLIEDNSTG--FENIKEEFRNVIKDTEVDARRPFCNC 575
           D  + +     +Q   P ++++ +LI     G  +E  K  F  ++ +  V       N 
Sbjct: 259 DEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMV-NQGVQPNVVTFNV 317

Query: 576 LIDI-CRNRNLNERAHELLYLGTLYGLYPGL--HNKTLDEWSL 615
           LID+ C+   + E A +LL +    G+ P L  +N  ++ + L
Sbjct: 318 LIDVLCKEGKVIE-AKDLLEVMIQRGIVPNLLTYNSLIEGFCL 359


>gi|357450627|ref|XP_003595590.1| hypothetical protein MTR_2g049740 [Medicago truncatula]
 gi|355484638|gb|AES65841.1| hypothetical protein MTR_2g049740 [Medicago truncatula]
          Length = 859

 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 79/272 (29%), Positives = 138/272 (50%), Gaps = 4/272 (1%)

Query: 241 AIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGK 300
           A+  F+++  TG++PD    S +++ + + G+V+  + + E+ V  G +P+ + ++ L  
Sbjct: 210 AVMVFDQIVGTGIVPDVYMCSIVVNAHCQVGRVDVAMEVLEKMVKEGLEPNVVTYNGLVN 269

Query: 301 MFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG-LT 359
            +   GD++G+  VL+ M   GV  N+V    L+    K GK   A  L  E+ E   L 
Sbjct: 270 GYVGRGDFEGVERVLRLMSERGVSRNVVTCTMLMRGYCKKGKMDEAEKLLREVEEDELLV 329

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
            DE+    L+  Y +    +DA+ + + M      ++ ++ NTL+     +G V EAER+
Sbjct: 330 VDERVYGVLVDGYCQMGRMEDAVRIRDEMLRVGLKVNMVICNTLIKGYCKLGQVCEAERV 389

Query: 420 FEDMKLSDY-CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL 478
           F  M   D+  KPD YSY  +L+ Y   G V  A  L EEM   G+   V+    +I+ L
Sbjct: 390 FVGM--VDWNLKPDCYSYNTLLDGYCREGKVSKAFMLCEEMLGDGITPTVVTYNTVIKGL 447

Query: 479 GKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
                 DD + ++ + ++RGV P++  C  +L
Sbjct: 448 VDVGSYDDALHLWHLMVERGVTPNEISCCTML 479



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 73/306 (23%), Positives = 143/306 (46%), Gaps = 2/306 (0%)

Query: 207 EQLANEMVSNEI-ELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
           E+L  E+  +E+  +D   Y  ++    +    ++A+   + M + GL  + V  + ++ 
Sbjct: 316 EKLLREVEEDELLVVDERVYGVLVDGYCQMGRMEDAVRIRDEMLRVGLKVNMVICNTLIK 375

Query: 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325
            Y K G+V E   ++   V    KPD  +++ L   +   G       + +EM   G+ P
Sbjct: 376 GYCKLGQVCEAERVFVGMVDWNLKPDCYSYNTLLDGYCREGKVSKAFMLCEEMLGDGITP 435

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
            +V YNT+++ +   G    A  L+  MVE G+TP+E +   ++  + K   +  A+ LW
Sbjct: 436 TVVTYNTVIKGLVDVGSYDDALHLWHLMVERGVTPNEISCCTMLDCFFKMGDSDRAMMLW 495

Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445
           + +    +    + +NT+++    +G + EA  +F+ MK      PD  +Y  + + Y  
Sbjct: 496 KEILGRGFTKSTVAFNTMISGLCKMGKLMEAGAVFDRMKELGL-SPDEITYRTLSDGYCK 554

Query: 446 GGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRL 505
            GNV  A ++   M    ++ ++     LI  L K R+++D+  +      RG+ P+   
Sbjct: 555 NGNVQEAFQIKGVMERQAMSASIEMYNSLIDGLFKIRKLNDVTDLLVEMQTRGLSPNVVT 614

Query: 506 CGCLLS 511
            G L+S
Sbjct: 615 YGTLIS 620



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 131/290 (45%), Gaps = 1/290 (0%)

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
           E++   MV   ++ D  +Y+T++    R     +A    E M   G+ P  VTY+ ++  
Sbjct: 387 ERVFVGMVDWNLKPDCYSYNTLLDGYCREGKVSKAFMLCEEMLGDGITPTVVTYNTVIKG 446

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
               G  ++ L L+   V  G  P+ I+   +   F + GD D    + +E+   G   +
Sbjct: 447 LVDVGSYDDALHLWHLMVERGVTPNEISCCTMLDCFFKMGDSDRAMMLWKEILGRGFTKS 506

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
            V +NT++  + K GK   A ++FD M E GL+PDE T   L   Y K    ++A ++  
Sbjct: 507 TVAFNTMISGLCKMGKLMEAGAVFDRMKELGLSPDEITYRTLSDGYCKNGNVQEAFQIKG 566

Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
            M          +YN+L++    I  + +   L  +M+      P+  +Y  +++ +   
Sbjct: 567 VMERQAMSASIEMYNSLIDGLFKIRKLNDVTDLLVEMQTRGL-SPNVVTYGTLISGWCDE 625

Query: 447 GNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496
             +D A  L+ EM E G   NV+ C+ ++  L +  RI +   +    +D
Sbjct: 626 QKLDKAFHLYFEMIERGFTPNVVVCSKIVSSLYRDDRISEATVILDKMLD 675



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 149/345 (43%), Gaps = 58/345 (16%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL--- 279
           + ++T+I+   +     EA   F+RM + GL PDE+TY  + D Y K+G V+E   +   
Sbjct: 508 VAFNTMISGLCKMGKLMEAGAVFDRMKELGLSPDEITYRTLSDGYCKNGNVQEAFQIKGV 567

Query: 280 YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
            ER   S      +  S++  +F +    + +  +L EM++ G+ PN+V Y TL+     
Sbjct: 568 MERQAMSA--SIEMYNSLIDGLF-KIRKLNDVTDLLVEMQTRGLSPNVVTYGTLISGWCD 624

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
             K   A  L+ EM+E G TP+    + ++    +     +A  + ++M      +DF +
Sbjct: 625 EQKLDKAFHLYFEMIERGFTPNVVVCSKIVSSLYRDDRISEATVILDKM------LDFDI 678

Query: 400 YNTLLNMCADI----GLVEEAERLFEDMKLSDYCK------------------------- 430
              + N C+D      L  EA+++ + +  SD C                          
Sbjct: 679 L-AVHNKCSDKLVKNDLTLEAQKIADSLDKSDICNSLSNNIVYNIAIDGLCKSGKLDEAR 737

Query: 431 ------------PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL 478
                       PDN++Y  +++     GNVD A +L +EM E G+  N+     LI  L
Sbjct: 738 SVLSVLMSRGFLPDNFTYCTLIHACSVSGNVDEAFKLRDEMLEKGLIPNITIYNALINGL 797

Query: 479 GKARRIDDLVRVFGVSIDRGVKPD----DRLCGCLLSVVSLCETS 519
            K   ID   R+F     +G+ P+    + L GC   +  L + S
Sbjct: 798 CKLGNIDRAQRLFYKLYQKGLVPNAVTYNILIGCYCRIGDLDKAS 842



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 129/317 (40%), Gaps = 52/317 (16%)

Query: 222 NITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY- 280
           +++YS ++       LF EA     ++       +   Y+              V S+Y 
Sbjct: 101 SLSYSILLHILTHARLFPEATTVLRQLMDLHCTNNYRAYAV----------CNHVFSVYK 150

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
           E G  SG       F +L K F E G      YV  EM  +G  P L   + LL  + + 
Sbjct: 151 EFGFCSG------VFDMLMKAFAERGMTKHALYVFDEMSRIGRVPGLRSCSFLLGKLVQK 204

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G+  +A  +FD++V +G+ PD    + ++  + +      A+E+ E+M +     + + Y
Sbjct: 205 GEGRVAVMVFDQIVGTGIVPDVYMCSIVVNAHCQVGRVDVAMEVLEKMVKEGLEPNVVTY 264

Query: 401 NTLLNMCADIGLVEEAERLFE--------------DMKLSDYCKP--------------- 431
           N L+N     G  E  ER+                 M +  YCK                
Sbjct: 265 NGLVNGYVGRGDFEGVERVLRLMSERGVSRNVVTCTMLMRGYCKKGKMDEAEKLLREVEE 324

Query: 432 ------DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
                 D   Y  +++ Y   G +++A+ + +EM  +G+ +N++ C  LI+   K  ++ 
Sbjct: 325 DELLVVDERVYGVLVDGYCQMGRMEDAVRIRDEMLRVGLKVNMVICNTLIKGYCKLGQVC 384

Query: 486 DLVRVFGVSIDRGVKPD 502
           +  RVF   +D  +KPD
Sbjct: 385 EAERVFVGMVDWNLKPD 401



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 78/338 (23%), Positives = 141/338 (41%), Gaps = 51/338 (15%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFG---RQFQLIEQLANEMVSNEIELDNITYSTIIT 230
           F+ +K   L P E  +  ++    + G     FQ+   +  + +S  IE+    Y+++I 
Sbjct: 530 FDRMKELGLSPDEITYRTLSDGYCKNGNVQEAFQIKGVMERQAMSASIEM----YNSLID 585

Query: 231 CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY----ERG--- 283
              +    ++  +    M   GL P+ VTY  ++  +    K+++   LY    ERG   
Sbjct: 586 GLFKIRKLNDVTDLLVEMQTRGLSPNVVTYGTLISGWCDEQKLDKAFHLYFEMIERGFTP 645

Query: 284 --------VASGWKPDPI--AFSVLGKMFGESGDYD----------------------GI 311
                   V+S ++ D I  A  +L KM     D+D                       I
Sbjct: 646 NVVVCSKIVSSLYRDDRISEATVILDKML----DFDILAVHNKCSDKLVKNDLTLEAQKI 701

Query: 312 RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371
              L +        N +VYN  ++ + K+GK   ARS+   ++  G  PD  T   LI  
Sbjct: 702 ADSLDKSDICNSLSNNIVYNIAIDGLCKSGKLDEARSVLSVLMSRGFLPDNFTYCTLIHA 761

Query: 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
              +    +A +L + M E     +  +YN L+N    +G ++ A+RLF  +       P
Sbjct: 762 CSVSGNVDEAFKLRDEMLEKGLIPNITIYNALINGLCKLGNIDRAQRLFYKLYQKGLV-P 820

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVM 469
           +  +Y  ++  Y   G++D A  L E+M+E G++  ++
Sbjct: 821 NAVTYNILIGCYCRIGDLDKASRLREKMTEEGISTRII 858


>gi|298707411|emb|CBJ30040.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 564

 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 155/323 (47%), Gaps = 10/323 (3%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIF---YNVTMKSLRFGRQFQLIEQLA----NEMVSNEIE 219
           W++     + ++S+ + P    F    N   K  ++ R   L++Q A     EM +  + 
Sbjct: 85  WEEVLVLLDVMRSEGVAPDHFAFGAAVNACAKGGQWERAVALLDQRALRLLGEMAAVGLS 144

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
            +  T+S+ +        ++ A+   ++M + G+ P+E T+SA +    K+G+    L++
Sbjct: 145 PNVTTFSSAVAACGNAGQWERALGLLDQMAEEGVPPNEFTFSAAVSACGKAGQWRPALTI 204

Query: 280 YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
             R  A+   P+   ++      G++G++   + +L EM+  GV PN++ +N+ + A+G 
Sbjct: 205 LRRMRAANCPPNVQTYTAAIDACGKAGEWRLAQGLLAEMREKGVAPNVITFNSAISALGN 264

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYG-KARWAKDALELWERMRENKWPMDFI 398
            G+   A +L  +M   G+ P+  + TA +   G   RWA+ AL + E+MR      D +
Sbjct: 265 GGQWQEALNLLRDMPSMGVQPNMWSYTAAVTACGDNNRWAR-ALAVHEQMRSRGIRGDEV 323

Query: 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458
            +   ++ CA  G  E A  L ++M+  +   P   S++  ++  G G     A+ L  E
Sbjct: 324 SFTAAIDACAQGGAWEMALALLDEMR-DEGIPPTVRSFSTAISACGKGQQWGRAVALLRE 382

Query: 459 MSELGVAINVMGCTCLIQCLGKA 481
           M E+GV+ N +     I   G+A
Sbjct: 383 MEEVGVSPNEVSFNAAIDACGRA 405



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 138/313 (44%), Gaps = 32/313 (10%)

Query: 193 TMKSLRFGRQFQLIEQL--ANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYK 250
           T+KS   GR+ Q  E L  AN    + +  D  TYS +++   R   ++E +   + M  
Sbjct: 40  TLKSQ--GRKGQWKEALTAANLAREDGVVFDVYTYSVLMSAVARSGRWEEVLVLLDVMRS 97

Query: 251 TGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDG 310
            G+ PD   + A ++  AK G+ E  ++L           D  A  +LG           
Sbjct: 98  EGVAPDHFAFGAAVNACAKGGQWERAVALL----------DQRALRLLG----------- 136

Query: 311 IRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK 370
                 EM ++G+ PN+  +++ + A G AG+   A  L D+M E G+ P+E T +A + 
Sbjct: 137 ------EMAAVGLSPNVTTFSSAVAACGNAGQWERALGLLDQMAEEGVPPNEFTFSAAVS 190

Query: 371 IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCK 430
             GKA   + AL +  RMR    P +   Y   ++ C   G    A+ L  +M+      
Sbjct: 191 ACGKAGQWRPALTILRRMRAANCPPNVQTYTAAIDACGKAGEWRLAQGLLAEMR-EKGVA 249

Query: 431 PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRV 490
           P+  ++ + ++  G+GG    A+ L  +M  +GV  N+   T  +   G   R    + V
Sbjct: 250 PNVITFNSAISALGNGGQWQEALNLLRDMPSMGVQPNMWSYTAAVTACGDNNRWARALAV 309

Query: 491 FGVSIDRGVKPDD 503
                 RG++ D+
Sbjct: 310 HEQMRSRGIRGDE 322



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 82/345 (23%), Positives = 148/345 (42%), Gaps = 10/345 (2%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           W+++    N  +   +   +   Y+V M ++    +++ +  L + M S  +  D+  + 
Sbjct: 50  WKEALTAANLAREDGVV-FDVYTYSVLMSAVARSGRWEEVLVLLDVMRSEGVAPDHFAFG 108

Query: 227 TII-TCAK------RCNLFDE-AIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS 278
             +  CAK         L D+ A+     M   GL P+  T+S+ +     +G+ E  L 
Sbjct: 109 AAVNACAKGGQWERAVALLDQRALRLLGEMAAVGLSPNVTTFSSAVAACGNAGQWERALG 168

Query: 279 LYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMG 338
           L ++    G  P+   FS      G++G +     +L+ M++    PN+  Y   ++A G
Sbjct: 169 LLDQMAEEGVPPNEFTFSAAVSACGKAGQWRPALTILRRMRAANCPPNVQTYTAAIDACG 228

Query: 339 KAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFI 398
           KAG+  LA+ L  EM E G+ P+  T  + I   G     ++AL L   M       +  
Sbjct: 229 KAGEWRLAQGLLAEMREKGVAPNVITFNSAISALGNGGQWQEALNLLRDMPSMGVQPNMW 288

Query: 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458
            Y   +  C D      A  + E M+ S   + D  S+TA ++    GG  + A+ L +E
Sbjct: 289 SYTAAVTACGDNNRWARALAVHEQMR-SRGIRGDEVSFTAAIDACAQGGAWEMALALLDE 347

Query: 459 MSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
           M + G+   V   +  I   GK ++    V +     + GV P++
Sbjct: 348 MRDEGIPPTVRSFSTAISACGKGQQWGRAVALLREMEEVGVSPNE 392



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 133/293 (45%), Gaps = 11/293 (3%)

Query: 142 LRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGR 201
           +RA    P+  T   A+        W+ +      ++ + + P   I +N  + +L  G 
Sbjct: 208 MRAANCPPNVQTYTAAIDACGKAGEWRLAQGLLAEMREKGVAP-NVITFNSAISALGNGG 266

Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS 261
           Q+Q    L  +M S  ++ +  +Y+  +T     N +  A+   E+M   G+  DEV+++
Sbjct: 267 QWQEALNLLRDMPSMGVQPNMWSYTAAVTACGDNNRWARALAVHEQMRSRGIRGDEVSFT 326

Query: 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
           A +D  A+ G  E  L+L +     G  P   +FS      G+   +     +L+EM+ +
Sbjct: 327 AAIDACAQGGAWEMALALLDEMRDEGIPPTVRSFSTAISACGKGQQWGRAVALLREMEEV 386

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR-WAKD 380
           GV PN V +N  ++A G+AG+   A SL D+M  +G+     T  A+I   GK + WA+ 
Sbjct: 387 GVSPNEVSFNAAIDACGRAGQWRAALSLLDKMSSAGVPRGTITYNAVIAACGKGKEWARA 446

Query: 381 ALELWERMRENK--------WPM-DFILYNTLLNMCADIGLVEEAERLFEDMK 424
              L E +             PM D + Y+  ++ C   G  EEA  L E ++
Sbjct: 447 VSVLREMLAGQAKTDGDMAPVPMADVVSYSAAIDACVRAGEWEEAISLVELLR 499



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 78/362 (21%), Positives = 141/362 (38%), Gaps = 56/362 (15%)

Query: 140 AFLRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRF 199
           AF  A+         E A+ +L+     Q++      + +  L P  T F +        
Sbjct: 106 AFGAAVNACAKGGQWERAVALLD-----QRALRLLGEMAAVGLSPNVTTFSSAVAACGNA 160

Query: 200 G---RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPD 256
           G   R   L++Q+A E V      +  T+S  ++   +   +  A+    RM      P+
Sbjct: 161 GQWERALGLLDQMAEEGVPP----NEFTFSAAVSACGKAGQWRPALTILRRMRAANCPPN 216

Query: 257 EVTYSAILDVYAKSGK---VEEVLS-LYERGVASGWKPDPIAFSVLGKMFGESGDYDGIR 312
             TY+A +D   K+G+    + +L+ + E+GVA    P+ I F+      G  G +    
Sbjct: 217 VQTYTAAIDACGKAGEWRLAQGLLAEMREKGVA----PNVITFNSAISALGNGGQWQEAL 272

Query: 313 YVLQEMKSLGVQPNL-----------------------------------VVYNTLLEAM 337
            +L++M S+GVQPN+                                   V +   ++A 
Sbjct: 273 NLLRDMPSMGVQPNMWSYTAAVTACGDNNRWARALAVHEQMRSRGIRGDEVSFTAAIDAC 332

Query: 338 GKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDF 397
            + G   +A +L DEM + G+ P  ++ +  I   GK +    A+ L   M E     + 
Sbjct: 333 AQGGAWEMALALLDEMRDEGIPPTVRSFSTAISACGKGQQWGRAVALLREMEEVGVSPNE 392

Query: 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE 457
           + +N  ++ C   G    A  L + M  +   +    +Y A++   G G     A+ +  
Sbjct: 393 VSFNAAIDACGRAGQWRAALSLLDKMSSAGVPR-GTITYNAVIAACGKGKEWARAVSVLR 451

Query: 458 EM 459
           EM
Sbjct: 452 EM 453


>gi|302763353|ref|XP_002965098.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
 gi|300167331|gb|EFJ33936.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
          Length = 600

 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 76/318 (23%), Positives = 145/318 (45%), Gaps = 1/318 (0%)

Query: 185 METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEW 244
           ++ I Y   +K L   ++     +L  E+ +     + + Y+ +I    +    ++ ++ 
Sbjct: 106 LDVISYTTVIKGLADSKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKN 165

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
           FE M  +  +P   TY+ ++D   K+  + +   ++E+ V  G  PD I ++ L   F +
Sbjct: 166 FEEMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSK 225

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
           +   D  R +L  M + G +P  V Y +++    K      A+ +  +M E G  P    
Sbjct: 226 ASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFI 285

Query: 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
            T+L+  Y     A++A ++   M       D ILY +L+++    G V EA  +F+ M 
Sbjct: 286 FTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSM- 344

Query: 425 LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484
           +   C PD  +Y  ++  +   GNV+ A E+ E M++ GV  +      L+    K  R+
Sbjct: 345 IEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERV 404

Query: 485 DDLVRVFGVSIDRGVKPD 502
           D    V+   +  G+KP+
Sbjct: 405 DQAFGVYDRMVASGIKPN 422



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/377 (23%), Positives = 166/377 (44%), Gaps = 7/377 (1%)

Query: 152 PTRENALLILNSL---KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           PTR    ++++ L   +    +   F  +  +   P +TI Y   +       +     +
Sbjct: 176 PTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVP-DTITYTTLIDGFSKASKMDEARK 234

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L + M++   E   +TY +I+    + ++ +EA E   +M + G  P    ++++L  Y 
Sbjct: 235 LLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYL 294

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
             G+ EE   +     A G  PD I ++ L  +   +G     R+V   M   G  P+ +
Sbjct: 295 SKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDAL 354

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            Y T+++   K G    A  + + M +SG+ PD     +L+  Y K      A  +++RM
Sbjct: 355 TYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRM 414

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
             +    + + +N L++     G  + A  LF++M   +   P   SYT +++  G  G 
Sbjct: 415 VASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDGLGKAGR 474

Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGC 508
           V  A   F+EM + G+       T LI  L KA RI +  ++    +  GV PD +    
Sbjct: 475 VSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSA 534

Query: 509 LLSVV---SLCETSEDV 522
           L++ +   S+ +T+ DV
Sbjct: 535 LITGLIDSSMVDTAWDV 551



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/257 (29%), Positives = 130/257 (50%), Gaps = 3/257 (1%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
           + M+      D +TY TII    +    + A E  E M K+G+ PD   Y++++D Y K 
Sbjct: 342 DSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKL 401

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEM-KSLGVQPNLVV 329
            +V++   +Y+R VASG KP+ + F+VL     + G  D    + +EM +   V P LV 
Sbjct: 402 ERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVS 461

Query: 330 YNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMR 389
           Y  L++ +GKAG+   A   F EM++ G+ P+  T T+LI    KA    +A +L E M 
Sbjct: 462 YTILIDGLGKAGRVSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMV 521

Query: 390 ENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNV 449
           +     D   Y+ L+    D  +V+ A  +F++M +   C P+  +Y  +   + + G  
Sbjct: 522 KLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEM-MKRGCAPNEVTYKVLRRGFRAAGRA 580

Query: 450 DNAIELFEEMSELGVAI 466
            + +E  ++    GVA+
Sbjct: 581 LD-LEAVKQHFSQGVAM 596



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/346 (24%), Positives = 150/346 (43%), Gaps = 39/346 (11%)

Query: 214 VSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKV 273
           V+ +  LD I+Y+T+I         DEA E FE +   G  P+ V Y+A++D   K+G++
Sbjct: 100 VTPKASLDVISYTTVIKGLADSKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRI 159

Query: 274 EEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTL 333
           E+ L  +E                                   EM      P    Y  +
Sbjct: 160 EDGLKNFE-----------------------------------EMSGSSCVPTRTTYTVV 184

Query: 334 LEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKW 393
           ++ + KA     A  +F++MV+ G  PD  T T LI  + KA    +A +L + M     
Sbjct: 185 IDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGP 244

Query: 394 PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAI 453
               + Y ++++    + ++ EA+ +   M+    C+P  + +T++L+ Y S G  + A 
Sbjct: 245 EPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERG-CEPGLFIFTSLLSYYLSKGRAEEAY 303

Query: 454 ELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVV 513
           ++  EM+  G A +V+  T LI  L    R+ +   VF   I++G  PD    G ++   
Sbjct: 304 QVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNF 363

Query: 514 SLCETSEDVGKVITCLQQA--NPKLVAFLNLIEDNSTGFENIKEEF 557
           S     E  G+++  + ++   P   A+ N + D     E + + F
Sbjct: 364 SKIGNVEAAGEILELMAKSGVGPDCFAY-NSLMDGYVKLERVDQAF 408



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 128/266 (48%), Gaps = 2/266 (0%)

Query: 239 DEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
           +EA +    M   G  PD + Y++++D+   +G+V E   +++  +  G  PD + +  +
Sbjct: 300 EEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTI 359

Query: 299 GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
            + F + G+ +    +L+ M   GV P+   YN+L++   K  +   A  ++D MV SG+
Sbjct: 360 IQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGI 419

Query: 359 TPDEKTLTALIKIYGKARWAKDALELWERMRENK-WPMDFILYNTLLNMCADIGLVEEAE 417
            P+  T   L+    K      A  L++ M E +  P   + Y  L++     G V EA 
Sbjct: 420 KPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDGLGKAGRVSEAF 479

Query: 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
             F++M +     P+ ++YT+++      G +  A +L E+M +LGV  +V   + LI  
Sbjct: 480 LQFQEM-IDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITG 538

Query: 478 LGKARRIDDLVRVFGVSIDRGVKPDD 503
           L  +  +D    VF   + RG  P++
Sbjct: 539 LIDSSMVDTAWDVFQEMMKRGCAPNE 564



 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 67/299 (22%), Positives = 138/299 (46%), Gaps = 17/299 (5%)

Query: 252 GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD-G 310
           G  P  V+Y+ ++   A   K++E    +   + +G +PD IAF+ L   F ++G    G
Sbjct: 2   GCEPTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVG 61

Query: 311 IRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTP----DEKTLT 366
            + + Q +K    +P++ +Y +++    KAG         D      +TP    D  + T
Sbjct: 62  HKLLNQALKRF--RPDVFLYTSVIHGYCKAGD-------LDTGYFRAVTPKASLDVISYT 112

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
            +IK    ++   +A EL+E ++      + + Y  +++     G +E+  + FE+M  S
Sbjct: 113 TVIKGLADSKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGS 172

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
             C P   +YT +++       + +A ++FE+M + G   + +  T LI    KA ++D+
Sbjct: 173 S-CVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDE 231

Query: 487 LVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ--ANPKLVAFLNLI 543
             ++  V + +G +P     G ++      +   +  +VI  +++    P L  F +L+
Sbjct: 232 ARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLL 290



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 95/213 (44%), Gaps = 32/213 (15%)

Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380
           +G +P +V YNT++  +    K   A   F+ M+++G  PD    T LI  + KA   + 
Sbjct: 1   MGCEPTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQV 60

Query: 381 ALEL----WERMREN---------------------------KWPMDFILYNTLLNMCAD 409
             +L     +R R +                           K  +D I Y T++   AD
Sbjct: 61  GHKLLNQALKRFRPDVFLYTSVIHGYCKAGDLDTGYFRAVTPKASLDVISYTTVIKGLAD 120

Query: 410 IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVM 469
              ++EA  LFE++K +  C P+  +YTA+++     G +++ ++ FEEMS         
Sbjct: 121 SKRIDEACELFEELKTAG-CSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTRT 179

Query: 470 GCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
             T +I  L KA+ + D  +VF   + +G  PD
Sbjct: 180 TYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPD 212



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 83/183 (45%), Gaps = 8/183 (4%)

Query: 164 LKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSL----RFGRQFQLIEQLANEMVSNEIE 219
           L+   +++  ++ + +  + P   + +NV M  L    +  R F L +++  +    E+ 
Sbjct: 401 LERVDQAFGVYDRMVASGIKP-NAVTFNVLMHGLFKDGKTDRAFSLFKEMLEK---EEVP 456

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
              ++Y+ +I    +     EA   F+ M   G++P+  TY++++   AK+G++ E   L
Sbjct: 457 PTLVSYTILIDGLGKAGRVSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKL 516

Query: 280 YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
            E  V  G  PD  A+S L     +S   D    V QEM   G  PN V Y  L      
Sbjct: 517 VEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGFRA 576

Query: 340 AGK 342
           AG+
Sbjct: 577 AGR 579


>gi|147833287|emb|CAN77475.1| hypothetical protein VITISV_041111 [Vitis vinifera]
          Length = 1010

 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 85/316 (26%), Positives = 143/316 (45%), Gaps = 17/316 (5%)

Query: 203 FQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSA 262
            +L E+   EM+   + L+ +  S +  C      F++A      M   G +PD  TYS 
Sbjct: 426 LELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSK 485

Query: 263 ILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG 322
           ++ +   + KV+    L+E   ++   PD   +++L   F + G     R    EM   G
Sbjct: 486 VIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDG 545

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382
             PN+V Y  L+ A  KA K   A  LF+ M+  G  P+  T TALI  + K+   + A 
Sbjct: 546 CAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKAC 605

Query: 383 ELWERMRENK--------WPMD--------FILYNTLLNMCADIGLVEEAERLFEDMKLS 426
           +++ RMR N         + +D           Y  L++       V+EA  L + M + 
Sbjct: 606 QIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVE 665

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
             C+P++  Y A+++ +   G +D A  +F +MSE G   NV   + LI  L K +R+D 
Sbjct: 666 G-CEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDL 724

Query: 487 LVRVFGVSIDRGVKPD 502
            ++V    ++    P+
Sbjct: 725 ALKVLSRMLENSCAPN 740



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 155/345 (44%), Gaps = 23/345 (6%)

Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS 261
           +F+    +  EM+S     D  TYS +I      +  D A   FE M    ++PD  TY+
Sbjct: 460 KFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYT 519

Query: 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
            ++D + K G +++    ++  V  G  P+ + ++ L   + ++        + + M S 
Sbjct: 520 ILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSE 579

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK----------------TL 365
           G  PN+V Y  L++   K+G+   A  ++  M  +   PD                  T 
Sbjct: 580 GCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTY 639

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
            AL+    KA   K+A +L + M       + I+Y+ L++    +G ++EA+ +F  M  
Sbjct: 640 GALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSE 699

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
             Y  P+ Y+Y+++++       +D A+++   M E   A NV+  T +I  L K  + D
Sbjct: 700 RGY-GPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTD 758

Query: 486 DLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQ 530
           +  R+  +  ++G  P+      +++  ++ +     GKV  CL+
Sbjct: 759 EAYRLMSMMEEKGCHPN------VVTYTAMIDGFGKAGKVDKCLE 797



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 130/300 (43%), Gaps = 20/300 (6%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
            + Y   + +    R+     +L   M+S     + +TY+ +I    +    ++A + + 
Sbjct: 550 VVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYA 609

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
           RM     +PD   Y  I D     G + +              P+   +  L     ++ 
Sbjct: 610 RMRGNADIPDVDMYFKIDD-----GNIRD--------------PNIFTYGALVDGLCKAH 650

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
                R +L  M   G +PN +VY+ L++   K GK   A+ +F +M E G  P+  T +
Sbjct: 651 KVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYS 710

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
           +LI    K +    AL++  RM EN    + I+Y  +++    +G  +EA RL   M+  
Sbjct: 711 SLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMME-E 769

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
             C P+  +YTAM++ +G  G VD  +EL  +M   G A N +    LI     A  +DD
Sbjct: 770 KGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDD 829



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 77/333 (23%), Positives = 143/333 (42%), Gaps = 20/333 (6%)

Query: 177 IKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCN 236
           I+  N+F      Y   +  L    + +    L + M     E ++I Y  +I    +  
Sbjct: 631 IRDPNIFT-----YGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVG 685

Query: 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS 296
             DEA   F +M + G  P+  TYS+++D   K  +++  L +  R + +   P+ I ++
Sbjct: 686 KLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYT 745

Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356
            +     + G  D    ++  M+  G  PN+V Y  +++  GKAGK      L  +M   
Sbjct: 746 EMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAK 805

Query: 357 GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL-----NMCADIG 411
           G  P+  T   LI     A    DA +L + M++  WP     Y  ++          +G
Sbjct: 806 GCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLG 865

Query: 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG--VAINVM 469
           L++E   + E++ +     P   +Y  +++ +   G ++ A+EL + MS      A +  
Sbjct: 866 LLDE---IAENVAV-----PIIPAYRILIDSFCKAGRLELALELHKXMSSCTSYSAADKD 917

Query: 470 GCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
             + LI+ L  A ++D    ++   I RG  P+
Sbjct: 918 LYSSLIESLSLASKVDKAFELYADMIKRGGIPE 950



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 87/439 (19%), Positives = 166/439 (37%), Gaps = 81/439 (18%)

Query: 139 EAFLRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLR 198
           + FLR   E  ++    + L ++ + +   K   FF W   Q  +      Y+  ++ L 
Sbjct: 117 QKFLRQFREKLNETLVVDVLSLVKNPELGVK---FFIWAGRQIGYGHTGPVYHALLEVLG 173

Query: 199 FGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEV 258
            G   ++ EQ   E+   + E+     + +I    R  L++ A+E   R+   G  P  +
Sbjct: 174 CGGNDRVPEQFLREIRDEDKEILGKLLNVLIRKCCRNGLWNVALEELGRLKDLGYKPSRL 233

Query: 259 TYSAILDVY-----------------------------------AKSGKVEEVLSLYERG 283
           TY+A++ V+                                    K+G+  E L+L E+ 
Sbjct: 234 TYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAGRWREALALIEK- 292

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
               +K D + ++ +     E+  ++     L  M+S    PN+V Y  LL    +  + 
Sbjct: 293 --EEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQL 350

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
           G  + +   M+  G  P  +   +LI  Y ++     A +L ++M +      +++YN L
Sbjct: 351 GRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNIL 410

Query: 404 L-NMCAD-----IGLVEEAERLFEDM---------------------------------- 423
           +  +C +     + ++E AE+ + +M                                  
Sbjct: 411 IGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIRE 470

Query: 424 KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483
            +S    PD  +Y+ ++ +  +   VDNA  LFEEM    V  +V   T LI    K   
Sbjct: 471 MMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGL 530

Query: 484 IDDLVRVFGVSIDRGVKPD 502
           +    + F   +  G  P+
Sbjct: 531 LQQARKWFDEMVRDGCAPN 549


>gi|410110105|gb|AFV61132.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           aristata]
          Length = 382

 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 83/366 (22%), Positives = 170/366 (46%), Gaps = 6/366 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K     P + + YN  +      + F+    L  EM +  +  +  +YS
Sbjct: 21  YSKAISIFSRLKRSGFTP-DLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTXSYS 79

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY + G  +E   L+      
Sbjct: 80  TLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 139

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   ++ N+V YN+++   GK  +   A
Sbjct: 140 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKA 199

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R +   +D IL+ T++  
Sbjct: 200 NNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQILFQTMIVA 259

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K     +PDN      ++I    G ++ A  +F +  + G   
Sbjct: 260 YERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVK 314

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           ++     +I  L K ++  ++V VF      G  PD  +   +L+     +  +    V 
Sbjct: 315 DITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVY 374

Query: 527 TCLQQA 532
             +Q+ 
Sbjct: 375 MEMQEV 380



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 130/247 (52%), Gaps = 1/247 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D + YS +I  +++   + +AI  F R+ ++G  PD V Y+A+++V+ K+    E  SL 
Sbjct: 4   DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLI 63

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
               A+G  P+  ++S L  M+ E+  +     V  EM+ +    +L   N +++  G+ 
Sbjct: 64  GEMKAAGVMPNTXSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQL 123

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G    A  LF  M + G+ P+  +   L+++YG A    +A+ L+  M+      + + Y
Sbjct: 124 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 183

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           N+++ +       E+A  L ++M+ S   +P++ +Y+ +++I+G  G +D A  LF+++ 
Sbjct: 184 NSMMMIYGKTLEHEKANNLIQEMQ-SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLR 242

Query: 461 ELGVAIN 467
             G+ I+
Sbjct: 243 SSGIEID 249



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 94/225 (41%), Gaps = 36/225 (16%)

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAK--- 379
           V  +LV+Y+ L+E   K      A S+F  +  SG TPD     A+I ++GKA+  +   
Sbjct: 1   VPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREAR 60

Query: 380 --------------------------------DALELWERMRENKWPMDFILYNTLLNMC 407
                                           +AL ++  MRE K  +D    N ++++ 
Sbjct: 61  SLIGEMKAAGVMPNTXSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVY 120

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
             +G+ +EA++LF  M+     +P+  SY  +L +YG       AI LF  M    +  N
Sbjct: 121 GQLGMAKEADKLFWGMRKMG-IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQN 179

Query: 468 VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSV 512
           V+    ++   GK    +    +      RG++P+      ++S+
Sbjct: 180 VVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISI 224



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/242 (20%), Positives = 100/242 (41%), Gaps = 36/242 (14%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGR--QFQLI 206
           P+  +    L +    + + ++   F  ++ +N+     + YN  M  + +G+  + +  
Sbjct: 143 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNI-EQNVVTYNSMM--MIYGKTLEHEKA 199

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
             L  EM S  IE ++ITYSTII+   +    D A   F+++  +G+  D++ +  ++  
Sbjct: 200 NNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQILFQTMIVA 259

Query: 267 Y-------------------------------AKSGKVEEVLSLYERGVASGWKPDPIAF 295
           Y                               A +G++EE   ++ + + +G   D   F
Sbjct: 260 YERAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVF 319

Query: 296 SVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVE 355
             +  +  +   Y  +  V  +M+ LG  P+  V   +L A GK  +   A  ++ EM E
Sbjct: 320 ERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEMQE 379

Query: 356 SG 357
            G
Sbjct: 380 VG 381



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 69/153 (45%), Gaps = 1/153 (0%)

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
           A+ ++ R++ + +  D + YN ++N+     L  EA  L  +MK +    P+  SY+ +L
Sbjct: 24  AISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAG-VMPNTXSYSTLL 82

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
            +Y        A+ +F EM E+   +++  C  +I   G+     +  ++F      G++
Sbjct: 83  TMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 142

Query: 501 PDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN 533
           P+      LL V    E   +   +   +Q+ N
Sbjct: 143 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKN 175


>gi|223635621|sp|Q940A6.2|PP325_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g19440, chloroplastic; Flags: Precursor
          Length = 838

 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 78/260 (30%), Positives = 128/260 (49%), Gaps = 5/260 (1%)

Query: 208 QLANEMVSNEIELDNITYSTIIT--CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
           ++  E++     +D ++Y+T+I+  C K+    DEA  + + M K GL PD  TYS ++ 
Sbjct: 539 RIQKEILGRGCVMDRVSYNTLISGCCGKK--KLDEAFMFLDEMVKRGLKPDNYTYSILIC 596

Query: 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325
                 KVEE +  ++    +G  PD   +SV+     ++   +  +    EM S  VQP
Sbjct: 597 GLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQP 656

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
           N VVYN L+ A  ++G+  +A  L ++M   G++P+  T T+LIK        ++A  L+
Sbjct: 657 NTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLF 716

Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445
           E MR      +   Y  L++    +G + + E L  +M  S    P+  +YT M+  Y  
Sbjct: 717 EEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMH-SKNVHPNKITYTVMIGGYAR 775

Query: 446 GGNVDNAIELFEEMSELGVA 465
            GNV  A  L  EM E G+ 
Sbjct: 776 DGNVTEASRLLNEMREKGIV 795



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 138/293 (47%), Gaps = 6/293 (2%)

Query: 185 METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEW 244
           M+ + YN  +      ++        +EMV   ++ DN TYS +I      N  +EAI++
Sbjct: 551 MDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQF 610

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
           ++   + G++PD  TYS ++D   K+ + EE    ++  ++   +P+ + ++ L + +  
Sbjct: 611 WDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCR 670

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
           SG       + ++MK  G+ PN   Y +L++ M    +   A+ LF+EM   GL P+   
Sbjct: 671 SGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFH 730

Query: 365 LTALIKIYGK-ARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
            TALI  YGK  +  K    L E   +N  P + I Y  ++   A  G V EA RL  +M
Sbjct: 731 YTALIDGYGKLGQMVKVECLLREMHSKNVHP-NKITYTVMIGGYARDGNVTEASRLLNEM 789

Query: 424 KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
           +      PD+ +Y   +  Y   G V   +E F+   E   A  + G   LIQ
Sbjct: 790 REKGIV-PDSITYKEFIYGYLKQGGV---LEAFKGSDEENYAAIIEGWNKLIQ 838



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 153/329 (46%), Gaps = 3/329 (0%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           F  + ++ +FP +T   N+ + SL    +FQ   + A ++V   +  D   ++T I    
Sbjct: 227 FPVLANKGMFPSKTT-CNILLTSLVRANEFQKCCE-AFDVVCKGVSPDVYLFTTAINAFC 284

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
           +    +EA++ F +M + G+ P+ VT++ ++D     G+ +E     E+ V  G +P  I
Sbjct: 285 KGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLI 344

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
            +S+L K    +       +VL+EM   G  PN++VYN L+++  +AG    A  + D M
Sbjct: 345 TYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLM 404

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
           V  GL+    T   LIK Y K   A +A  L + M    + ++   + +++ +     + 
Sbjct: 405 VSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMF 464

Query: 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTC 473
           + A R   +M L +   P     T +++     G    A+EL+ +    G  ++      
Sbjct: 465 DSALRFVGEMLLRNM-SPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNA 523

Query: 474 LIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           L+  L +A ++D+  R+    + RG   D
Sbjct: 524 LLHGLCEAGKLDEAFRIQKEILGRGCVMD 552



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 141/315 (44%), Gaps = 5/315 (1%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN  +K      Q    E+L  EM+S    ++  +++++I       +FD A+ +   M 
Sbjct: 416 YNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEML 475

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
              + P     + ++    K GK  + L L+ + +  G+  D    + L     E+G  D
Sbjct: 476 LRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLD 535

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGL--ARSLFDEMVESGLTPDEKTLTA 367
               + +E+   G   + V YNTL+   G  GK  L  A    DEMV+ GL PD  T + 
Sbjct: 536 EAFRIQKEILGRGCVMDRVSYNTLIS--GCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSI 593

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           LI         ++A++ W+  + N    D   Y+ +++ C      EE +  F++M +S 
Sbjct: 594 LICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEM-MSK 652

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
             +P+   Y  ++  Y   G +  A+EL E+M   G++ N    T LI+ +    R+++ 
Sbjct: 653 NVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEA 712

Query: 488 VRVFGVSIDRGVKPD 502
             +F      G++P+
Sbjct: 713 KLLFEEMRMEGLEPN 727



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 131/277 (47%), Gaps = 4/277 (1%)

Query: 241 AIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGK 300
           A++ F  +   G+ P + T + +L    ++ + ++    ++  V  G  PD   F+    
Sbjct: 223 ALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDV-VCKGVSPDVYLFTTAIN 281

Query: 301 MFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTP 360
            F + G  +    +  +M+  GV PN+V +NT+++ +G  G+   A    ++MVE G+ P
Sbjct: 282 AFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEP 341

Query: 361 DEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLF 420
              T + L+K   +A+   DA  + + M +  +P + I+YN L++   + G + +A  + 
Sbjct: 342 TLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEI- 400

Query: 421 EDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK 480
           +D+ +S      + +Y  ++  Y   G  DNA  L +EM  +G  +N    T +I  L  
Sbjct: 401 KDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCS 460

Query: 481 ARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCE 517
               D  +R  G  + R + P   L   L+S   LC+
Sbjct: 461 HLMFDSALRFVGEMLLRNMSPGGGLLTTLIS--GLCK 495



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 73/385 (18%), Positives = 144/385 (37%), Gaps = 69/385 (17%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
            + +N  +  L    ++        +MV   +E   ITYS ++    R     +A    +
Sbjct: 308 VVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLK 367

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
            M K G  P+ + Y+ ++D + ++G + + + + +  V+ G       ++ L K + ++G
Sbjct: 368 EMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNG 427

Query: 307 DYDGIRYVLQEMKSLG-----------------------------------VQPNLVVYN 331
             D    +L+EM S+G                                   + P   +  
Sbjct: 428 QADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLT 487

Query: 332 TLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN 391
           TL+  + K GK   A  L+ + +  G   D +T  AL+    +A    +A  + + +   
Sbjct: 488 TLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGR 547

Query: 392 KWPMDFILYNTLLNMCADIGLVEEAERLFEDM---------------------------- 423
              MD + YNTL++ C     ++EA    ++M                            
Sbjct: 548 GCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEA 607

Query: 424 -KLSDYCK-----PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
            +  D CK     PD Y+Y+ M++        +   E F+EM    V  N +    LI+ 
Sbjct: 608 IQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRA 667

Query: 478 LGKARRIDDLVRVFGVSIDRGVKPD 502
             ++ R+   + +      +G+ P+
Sbjct: 668 YCRSGRLSMALELREDMKHKGISPN 692


>gi|302815701|ref|XP_002989531.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
 gi|300142709|gb|EFJ09407.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
          Length = 436

 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 95/367 (25%), Positives = 170/367 (46%), Gaps = 7/367 (1%)

Query: 180 QNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFD 239
           + + P    F  V     + GR  + ++++   MV     L    Y  +I+C  +   FD
Sbjct: 4   RRVIPGAATFNTVADGFAKAGR-LEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGNFD 62

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           EA +    M         + YS I++   K  +VEE   L E+ +A    PD + +  + 
Sbjct: 63  EAYKLLHTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEK-MARYAPPDALTYGPIV 121

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
           +   ++   D     ++EM + G++P+  +YN +L  + +  K   AR LF++MV+  + 
Sbjct: 122 ERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRIN 181

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN-MCADIGLVEEAER 418
           P+  T   LI    KA   + A EL++ M    +    + YNTL++  C    LV  A+ 
Sbjct: 182 PNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVA-AKD 240

Query: 419 LFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL 478
           +F+ M  S+ C P+  +YT +++     G V  A E+ + M + GV  NV   +CLI   
Sbjct: 241 VFDKMVRSN-CVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGF 299

Query: 479 GKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ--ANPKL 536
            K RR+D+  ++    + +G+ P       LL+ +   +  ED  K+   + Q   +P +
Sbjct: 300 CKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTV 359

Query: 537 VAFLNLI 543
           V +  L+
Sbjct: 360 VTYNTLL 366



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 120/252 (47%), Gaps = 1/252 (0%)

Query: 212 EMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG 271
           EM +  I+ D   Y+ +++   +    +EA   FE+M K  + P+ VTY+ +++   K+ 
Sbjct: 139 EMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGLCKAW 198

Query: 272 KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYN 331
           ++E    L++     G+ P  ++++ L   F +  D    + V  +M      PN+V Y 
Sbjct: 199 RIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYT 258

Query: 332 TLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN 391
           TL++ + K+GK   A  + D MV+ G+TP+  T + LI  + K R   +A +L E+M   
Sbjct: 259 TLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQ 318

Query: 392 KWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDN 451
                 + YN LLN       +E+A +LF  M     C P   +Y  +L        +D 
Sbjct: 319 GIAPTVVTYNILLNSLCRADKLEDAFKLFRGMA-QRRCHPTVVTYNTLLRALCHHKQLDG 377

Query: 452 AIELFEEMSELG 463
           A  L+ EM   G
Sbjct: 378 AHRLYAEMIAKG 389



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 124/274 (45%), Gaps = 1/274 (0%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           +   YN  +  L    + +    L  +MV   I  + +TY+T+I    +    + A E F
Sbjct: 148 DAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELF 207

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           + M   G +P EV+Y+ ++D + K   +     ++++ V S   P+ + ++ L     +S
Sbjct: 208 KEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKS 267

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G       VL  M   GV PN+  Y+ L++   K  +   A  L ++MV  G+ P   T 
Sbjct: 268 GKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTY 327

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
             L+    +A   +DA +L+  M + +     + YNTLL        ++ A RL+ +M +
Sbjct: 328 NILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEM-I 386

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           +  C PD  +Y  +       G V  A EL E+M
Sbjct: 387 AKGCPPDAITYDTLAWGLTRAGKVHEAQELMEKM 420



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 129/282 (45%), Gaps = 1/282 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D +TY  I+    +    D+A+   E M   G+ PD   Y+ +L    +  KVEE   L+
Sbjct: 113 DALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLF 172

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
           E+ V     P+ + ++ L     ++   +    + +EM   G  P  V YNTL++   K 
Sbjct: 173 EKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKK 232

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
                A+ +FD+MV S   P+  T T LI    K+   + A E+ + M +     +   Y
Sbjct: 233 KDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATY 292

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           + L++    +  V+EA +L E M ++    P   +Y  +LN       +++A +LF  M+
Sbjct: 293 SCLIDGFCKVRRVDEAHKLLEQM-VTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMA 351

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           +      V+    L++ L   +++D   R++   I +G  PD
Sbjct: 352 QRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPD 393



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 117/259 (45%), Gaps = 1/259 (0%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           +++   F  +  Q + P   + YN  +  L    + +   +L  EM         ++Y+T
Sbjct: 166 EEARLLFEKMVKQRINP-NVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNT 224

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           +I    +      A + F++M ++  +P+ VTY+ ++D  +KSGKV+    + +  V  G
Sbjct: 225 LIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKG 284

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
             P+   +S L   F +    D    +L++M + G+ P +V YN LL ++ +A K   A 
Sbjct: 285 VTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAF 344

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
            LF  M +    P   T   L++     +    A  L+  M     P D I Y+TL    
Sbjct: 345 KLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGL 404

Query: 408 ADIGLVEEAERLFEDMKLS 426
              G V EA+ L E MKL+
Sbjct: 405 TRAGKVHEAQELMEKMKLT 423



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 105/236 (44%), Gaps = 4/236 (1%)

Query: 160 ILNSL-KFW--QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSN 216
           ++N L K W  + +Y  F  +  +   P E + YN  +      +     + + ++MV +
Sbjct: 190 LINGLCKAWRIETAYELFKEMAGKGYVPTE-VSYNTLIDGFCKKKDLVAAKDVFDKMVRS 248

Query: 217 EIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV 276
               + +TY+T+I    +      A E  + M K G+ P+  TYS ++D + K  +V+E 
Sbjct: 249 NCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEA 308

Query: 277 LSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA 336
             L E+ V  G  P  + +++L      +   +    + + M      P +V YNTLL A
Sbjct: 309 HKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRA 368

Query: 337 MGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENK 392
           +    +   A  L+ EM+  G  PD  T   L     +A    +A EL E+M+  K
Sbjct: 369 LCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQELMEKMKLTK 424


>gi|410110085|gb|AFV61122.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           fucata]
          Length = 382

 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/366 (22%), Positives = 170/366 (46%), Gaps = 6/366 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K     P + + YN  +      + F+    L  EM +  +  +  +YS
Sbjct: 21  YSKAISIFSRLKRSGFTP-DLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTTSYS 79

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY + G  +E   L+      
Sbjct: 80  TLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 139

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   ++ N+V YN+++   GK  +   A
Sbjct: 140 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKA 199

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R +   +D IL+ T++  
Sbjct: 200 NNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQILFQTMIVA 259

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K     +PDN      ++I    G ++ A  +F +  + G   
Sbjct: 260 YERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVK 314

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           ++     +I  L K ++  ++V VF      G  PD  +   +L+     +  +    V 
Sbjct: 315 DITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVY 374

Query: 527 TCLQQA 532
             +Q+ 
Sbjct: 375 MEMQEV 380



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 130/247 (52%), Gaps = 1/247 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D + YS +I  +++   + +AI  F R+ ++G  PD V Y+A+++V+ K+    E  SL 
Sbjct: 4   DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLI 63

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
               A+G  P+  ++S L  M+ E+  +     V  EM+ +    +L   N +++  G+ 
Sbjct: 64  GEMKAAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQL 123

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G    A  LF  M + G+ P+  +   L+++YG A    +A+ L+  M+      + + Y
Sbjct: 124 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 183

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           N+++ +       E+A  L ++M+ S   +P++ +Y+ +++I+G  G +D A  LF+++ 
Sbjct: 184 NSMMMIYGKTLEHEKANNLIQEMQ-SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLR 242

Query: 461 ELGVAIN 467
             G+ I+
Sbjct: 243 SSGIEID 249



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 94/225 (41%), Gaps = 36/225 (16%)

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAK--- 379
           V  +LV+Y+ L+E   K      A S+F  +  SG TPD     A+I ++GKA+  +   
Sbjct: 1   VPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREAR 60

Query: 380 --------------------------------DALELWERMRENKWPMDFILYNTLLNMC 407
                                           +AL ++  MRE K  +D    N ++++ 
Sbjct: 61  SLIGEMKAAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVY 120

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
             +G+ +EA++LF  M+     +P+  SY  +L +YG       AI LF  M    +  N
Sbjct: 121 GQLGMAKEADKLFWGMRKMG-IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQN 179

Query: 468 VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSV 512
           V+    ++   GK    +    +      RG++P+      ++S+
Sbjct: 180 VVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISI 224



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/242 (20%), Positives = 100/242 (41%), Gaps = 36/242 (14%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGR--QFQLI 206
           P+  +    L +    + + ++   F  ++ +N+     + YN  M  + +G+  + +  
Sbjct: 143 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNI-EQNVVTYNSMM--MIYGKTLEHEKA 199

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
             L  EM S  IE ++ITYSTII+   +    D A   F+++  +G+  D++ +  ++  
Sbjct: 200 NNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQILFQTMIVA 259

Query: 267 Y-------------------------------AKSGKVEEVLSLYERGVASGWKPDPIAF 295
           Y                               A +G++EE   ++ + + +G   D   F
Sbjct: 260 YERAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVF 319

Query: 296 SVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVE 355
             +  +  +   Y  +  V  +M+ LG  P+  V   +L A GK  +   A  ++ EM E
Sbjct: 320 ERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEMQE 379

Query: 356 SG 357
            G
Sbjct: 380 VG 381



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 69/153 (45%), Gaps = 1/153 (0%)

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
           A+ ++ R++ + +  D + YN ++N+     L  EA  L  +MK +    P+  SY+ +L
Sbjct: 24  AISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAG-VMPNTTSYSTLL 82

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
            +Y        A+ +F EM E+   +++  C  +I   G+     +  ++F      G++
Sbjct: 83  TMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 142

Query: 501 PDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN 533
           P+      LL V    E   +   +   +Q+ N
Sbjct: 143 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKN 175


>gi|242067038|ref|XP_002454808.1| hypothetical protein SORBIDRAFT_04g037860 [Sorghum bicolor]
 gi|241934639|gb|EES07784.1| hypothetical protein SORBIDRAFT_04g037860 [Sorghum bicolor]
          Length = 951

 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 102/370 (27%), Positives = 163/370 (44%), Gaps = 54/370 (14%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           +T+ YN+ + +L      +L   + +EM    +  D +T ST +    R  L  EA    
Sbjct: 114 DTVSYNIFLAALSEQGHGRLAPPVLSEMCKRGVSWDGVTVSTALVGLCRTGLVGEAAALA 173

Query: 246 ERMYKT----GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKM 301
           E + +     GL  D V ++A++D Y K   +   L++ ER    G   D + ++ L   
Sbjct: 174 EMLVRGRGIDGL--DVVGWNALIDGYCKVQDMAAALAVVERMTTQGVALDVVGYNSLVAG 231

Query: 302 FGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD 361
           F  SGD D    V++ MK+ GV+PN+V Y  L+    K      A SL++ MV SG+ PD
Sbjct: 232 FFHSGDADAALEVVERMKADGVEPNVVTYTALIGEYCKGKGMDEAFSLYEGMVRSGVLPD 291

Query: 362 EKTLTALI--------------------KI---------------YGKARWAKDALELWE 386
             TL+AL+                    KI                 KAR   ++L L  
Sbjct: 292 VVTLSALVDGLCRDGQFSEAYALFREMDKIGVAPNHVTYCTLIDSLAKARRGSESLGLLG 351

Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
            M      MD ++Y  L++     G +EEA+ +    + SD   P+  +YT +++ +   
Sbjct: 352 EMVSRGVVMDLVMYTALMDRLGKEGKIEEAKDVLRHAQ-SDNITPNFVTYTVLVDAHCRA 410

Query: 447 GNVDNAIELFEEMSELGVAINVMGCTCLIQ------CLGKARRIDDLVRVFGVSIDRGVK 500
           GN+D A ++  +M E  V  NV+  + +I       CLGKA    D +R      D G+ 
Sbjct: 411 GNIDGAEQVLLQMEEKSVIPNVVTFSSIINGLVKRGCLGKAA---DYMRKMK---DSGIA 464

Query: 501 PDDRLCGCLL 510
           P+    G L+
Sbjct: 465 PNVVTYGTLI 474



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 141/291 (48%), Gaps = 1/291 (0%)

Query: 213 MVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK 272
           M +  + LD + Y++++         D A+E  ERM   G+ P+ VTY+A++  Y K   
Sbjct: 213 MTTQGVALDVVGYNSLVAGFFHSGDADAALEVVERMKADGVEPNVVTYTALIGEYCKGKG 272

Query: 273 VEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNT 332
           ++E  SLYE  V SG  PD +  S L       G +     + +EM  +GV PN V Y T
Sbjct: 273 MDEAFSLYEGMVRSGVLPDVVTLSALVDGLCRDGQFSEAYALFREMDKIGVAPNHVTYCT 332

Query: 333 LLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENK 392
           L++++ KA +   +  L  EMV  G+  D    TAL+   GK    ++A ++    + + 
Sbjct: 333 LIDSLAKARRGSESLGLLGEMVSRGVVMDLVMYTALMDRLGKEGKIEEAKDVLRHAQSDN 392

Query: 393 WPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNA 452
              +F+ Y  L++     G ++ AE++   M+      P+  ++++++N     G +  A
Sbjct: 393 ITPNFVTYTVLVDAHCRAGNIDGAEQVLLQME-EKSVIPNVVTFSSIINGLVKRGCLGKA 451

Query: 453 IELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
            +   +M + G+A NV+    LI    K +  +  + V+   +  GV+ ++
Sbjct: 452 ADYMRKMKDSGIAPNVVTYGTLIDGFFKFQGQEAALDVYRDMLHEGVEANN 502



 Score =  103 bits (257), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 141/301 (46%), Gaps = 1/301 (0%)

Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS 261
           QF     L  EM    +  +++TY T+I    +     E++     M   G++ D V Y+
Sbjct: 307 QFSEAYALFREMDKIGVAPNHVTYCTLIDSLAKARRGSESLGLLGEMVSRGVVMDLVMYT 366

Query: 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
           A++D   K GK+EE   +     +    P+ + ++VL      +G+ DG   VL +M+  
Sbjct: 367 ALMDRLGKEGKIEEAKDVLRHAQSDNITPNFVTYTVLVDAHCRAGNIDGAEQVLLQMEEK 426

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
            V PN+V +++++  + K G  G A     +M +SG+ P+  T   LI  + K +  + A
Sbjct: 427 SVIPNVVTFSSIINGLVKRGCLGKAADYMRKMKDSGIAPNVVTYGTLIDGFFKFQGQEAA 486

Query: 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
           L+++  M       +  + ++L+N     G +E AE LF+DM        D+ +YT +++
Sbjct: 487 LDVYRDMLHEGVEANNFVVDSLVNGLRKNGNIEGAEALFKDMDERGLLL-DHVNYTTLMD 545

Query: 442 IYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
                GN+  A ++ +E+ E  ++ + +     I CL    +  +         + G++P
Sbjct: 546 GLFKTGNMPAAFKVGQELMEKNLSPDAVVYNVFINCLCTLGKFSEAKSFLKEMRNTGLEP 605

Query: 502 D 502
           D
Sbjct: 606 D 606



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 91/403 (22%), Positives = 159/403 (39%), Gaps = 43/403 (10%)

Query: 138 EEAFLRAITEIPHQPTRENALLI---LNSLK---FWQKSYFFFNWIKSQNLFPMETIFYN 191
           +EA L    ++ H+    N  ++   +N L+     + +   F  +  + L  ++ + Y 
Sbjct: 483 QEAALDVYRDMLHEGVEANNFVVDSLVNGLRKNGNIEGAEALFKDMDERGLL-LDHVNYT 541

Query: 192 VTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKT 251
             M  L          ++  E++   +  D + Y+  I C      F EA  + + M  T
Sbjct: 542 TLMDGLFKTGNMPAAFKVGQELMEKNLSPDAVVYNVFINCLCTLGKFSEAKSFLKEMRNT 601

Query: 252 GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGI 311
           GL PD+ TY+ ++    + GK  + L L +    +  KP+ I ++ L     E+G     
Sbjct: 602 GLEPDQATYNTMIAARCREGKTSKALKLLKEMKRNSIKPNLITYTTLVVGLLEAGVVKKA 661

Query: 312 RYVLQEMKSLGVQP-----------------------------------NLVVYNTLLEA 336
           +++L EM S G  P                                   ++ VYNTL+  
Sbjct: 662 KFLLNEMASAGFAPTSLTHQRVLQACSGSRRPDVILEIHELMMGAGLHADITVYNTLVHV 721

Query: 337 MGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMD 396
           +   G    A  + DEM+  G+ PD  T  ALI  + K+    +A  ++ +M       +
Sbjct: 722 LCCHGMARNATVVLDEMLTRGIAPDTITFNALILGHCKSSHLDNAFAIYAQMLHQGLSPN 781

Query: 397 FILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELF 456
              +NTLL      G + EA+ +  DMK     +P+N +Y  ++  Y    N   A+ L+
Sbjct: 782 IATFNTLLGGLESAGRIGEADTVLSDMKKVGL-EPNNLTYDILVTGYAKKSNKVEALRLY 840

Query: 457 EEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGV 499
            EM   G          L+    KA  ++    +F     RGV
Sbjct: 841 CEMVSKGFIPKASTYNSLMSDFAKAGMMNQAKELFSEMKRRGV 883



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/327 (21%), Positives = 140/327 (42%), Gaps = 36/327 (11%)

Query: 212 EMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG 271
           +M+   +E +N    +++   ++    + A   F+ M + GL+ D V Y+ ++D   K+G
Sbjct: 492 DMLHEGVEANNFVVDSLVNGLRKNGNIEGAEALFKDMDERGLLLDHVNYTTLMDGLFKTG 551

Query: 272 KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYN 331
            +     + +  +     PD + ++V        G +   +  L+EM++ G++P+   YN
Sbjct: 552 NMPAAFKVGQELMEKNLSPDAVVYNVFINCLCTLGKFSEAKSFLKEMRNTGLEPDQATYN 611

Query: 332 TLLEAMGKAG-----------------KPGL------------------ARSLFDEMVES 356
           T++ A  + G                 KP L                  A+ L +EM  +
Sbjct: 612 TMIAARCREGKTSKALKLLKEMKRNSIKPNLITYTTLVVGLLEAGVVKKAKFLLNEMASA 671

Query: 357 GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEA 416
           G  P   T   +++    +R     LE+ E M       D  +YNTL+++    G+   A
Sbjct: 672 GFAPTSLTHQRVLQACSGSRRPDVILEIHELMMGAGLHADITVYNTLVHVLCCHGMARNA 731

Query: 417 ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
             + ++M L+    PD  ++ A++  +    ++DNA  ++ +M   G++ N+     L+ 
Sbjct: 732 TVVLDEM-LTRGIAPDTITFNALILGHCKSSHLDNAFAIYAQMLHQGLSPNIATFNTLLG 790

Query: 477 CLGKARRIDDLVRVFGVSIDRGVKPDD 503
            L  A RI +   V       G++P++
Sbjct: 791 GLESAGRIGEADTVLSDMKKVGLEPNN 817



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 81/351 (23%), Positives = 154/351 (43%), Gaps = 17/351 (4%)

Query: 140 AFLRAITEIPHQPTRENALLILNSL---KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKS 196
           A  R + +I   P       +++SL   +   +S      + S+ +  M+ + Y   M  
Sbjct: 313 ALFREMDKIGVAPNHVTYCTLIDSLAKARRGSESLGLLGEMVSRGVV-MDLVMYTALMD- 370

Query: 197 LRFGRQFQLIE--QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLM 254
            R G++ ++ E   +     S+ I  + +TY+ ++    R    D A +   +M +  ++
Sbjct: 371 -RLGKEGKIEEAKDVLRHAQSDNITPNFVTYTVLVDAHCRAGNIDGAEQVLLQMEEKSVI 429

Query: 255 PDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF----GESGDYDG 310
           P+ VT+S+I++   K G + +      +   SG  P+ + +  L   F    G+    D 
Sbjct: 430 PNVVTFSSIINGLVKRGCLGKAADYMRKMKDSGIAPNVVTYGTLIDGFFKFQGQEAALDV 489

Query: 311 IRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK 370
            R +L E    GV+ N  V ++L+  + K G    A +LF +M E GL  D    T L+ 
Sbjct: 490 YRDMLHE----GVEANNFVVDSLVNGLRKNGNIEGAEALFKDMDERGLLLDHVNYTTLMD 545

Query: 371 IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCK 430
              K      A ++ + + E     D ++YN  +N    +G   EA+   ++M+ +   +
Sbjct: 546 GLFKTGNMPAAFKVGQELMEKNLSPDAVVYNVFINCLCTLGKFSEAKSFLKEMR-NTGLE 604

Query: 431 PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
           PD  +Y  M+      G    A++L +EM    +  N++  T L+  L +A
Sbjct: 605 PDQATYNTMIAARCREGKTSKALKLLKEMKRNSIKPNLITYTTLVVGLLEA 655



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 78/334 (23%), Positives = 140/334 (41%), Gaps = 42/334 (12%)

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS----- 261
           EQ+  +M    +  + +T+S+II    +     +A ++  +M  +G+ P+ VTY      
Sbjct: 417 EQVLLQMEEKSVIPNVVTFSSIINGLVKRGCLGKAADYMRKMKDSGIAPNVVTYGTLIDG 476

Query: 262 --------AILDVYA----------------------KSGKVEEVLSLYERGVASGWKPD 291
                   A LDVY                       K+G +E   +L++     G   D
Sbjct: 477 FFKFQGQEAALDVYRDMLHEGVEANNFVVDSLVNGLRKNGNIEGAEALFKDMDERGLLLD 536

Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
            + ++ L     ++G+      V QE+    + P+ VVYN  +  +   GK   A+S   
Sbjct: 537 HVNYTTLMDGLFKTGNMPAAFKVGQELMEKNLSPDAVVYNVFINCLCTLGKFSEAKSFLK 596

Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411
           EM  +GL PD+ T   +I    +      AL+L + M+ N    + I Y TL+    + G
Sbjct: 597 EMRNTGLEPDQATYNTMIAARCREGKTSKALKLLKEMKRNSIKPNLITYTTLVVGLLEAG 656

Query: 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC 471
           +V++A+ L  +M  + +  P + ++  +L         D  +E+ E M   G+  ++   
Sbjct: 657 VVKKAKFLLNEMASAGFA-PTSLTHQRVLQACSGSRRPDVILEIHELMMGAGLHADITVY 715

Query: 472 TCLIQ---CLGKARRIDDLVRVFGVSIDRGVKPD 502
             L+    C G AR   +   V    + RG+ PD
Sbjct: 716 NTLVHVLCCHGMAR---NATVVLDEMLTRGIAPD 746



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 94/213 (44%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
           +EM++  I  D IT++ +I    + +  D A   + +M   GL P+  T++ +L     +
Sbjct: 736 DEMLTRGIAPDTITFNALILGHCKSSHLDNAFAIYAQMLHQGLSPNIATFNTLLGGLESA 795

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
           G++ E  ++       G +P+ + + +L   + +  +      +  EM S G  P    Y
Sbjct: 796 GRIGEADTVLSDMKKVGLEPNNLTYDILVTGYAKKSNKVEALRLYCEMVSKGFIPKASTY 855

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
           N+L+    KAG    A+ LF EM   G+     T   L+  + K R   +   L + M+E
Sbjct: 856 NSLMSDFAKAGMMNQAKELFSEMKRRGVLHTSSTYDILLNGWSKLRNGIEVRILLKDMKE 915

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
             +       +++    +  G+  EA RL + +
Sbjct: 916 LGFKPSKGTISSMSRAFSRPGMTGEARRLLKTL 948



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 90/207 (43%), Gaps = 8/207 (3%)

Query: 186 ETIFYNVTM----KSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEA 241
           +TI +N  +    KS      F +  Q+ ++ +S  I     T++T++   +      EA
Sbjct: 746 DTITFNALILGHCKSSHLDNAFAIYAQMLHQGLSPNIA----TFNTLLGGLESAGRIGEA 801

Query: 242 IEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKM 301
                 M K GL P+ +TY  ++  YAK     E L LY   V+ G+ P    ++ L   
Sbjct: 802 DTVLSDMKKVGLEPNNLTYDILVTGYAKKSNKVEALRLYCEMVSKGFIPKASTYNSLMSD 861

Query: 302 FGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD 361
           F ++G  +  + +  EMK  GV      Y+ LL    K       R L  +M E G  P 
Sbjct: 862 FAKAGMMNQAKELFSEMKRRGVLHTSSTYDILLNGWSKLRNGIEVRILLKDMKELGFKPS 921

Query: 362 EKTLTALIKIYGKARWAKDALELWERM 388
           + T++++ + + +     +A  L + +
Sbjct: 922 KGTISSMSRAFSRPGMTGEARRLLKTL 948


>gi|410110097|gb|AFV61128.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           rugosa]
          Length = 348

 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/345 (23%), Positives = 164/345 (47%), Gaps = 6/345 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K     P + + YN  +      + F+    L  EM +  +  +  +YS
Sbjct: 3   YSKAISIFSRLKRSGFTP-DLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTXSYS 61

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY + G  +E   L+      
Sbjct: 62  TLLTMYVENKKFLEALSVFXEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 121

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   ++ N+V YN+++   GK  +   A
Sbjct: 122 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKA 181

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R +   +D IL+ T++  
Sbjct: 182 NNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVA 241

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K     +PDN      ++I    G ++ A  +F +  + G   
Sbjct: 242 YERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVK 296

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511
           ++     +I  L K ++  ++V VF      G  PD  +   +L+
Sbjct: 297 DITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLN 341



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 99/206 (48%), Gaps = 1/206 (0%)

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
           DY     +   +K  G  P+LV YN ++   GKA     ARSL  EM  +G+ P+  + +
Sbjct: 2   DYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTXSYS 61

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
            L+ +Y + +   +AL ++  MRE K  +D    N ++++   +G+ +EA++LF  M+  
Sbjct: 62  TLLTMYVENKKFLEALSVFXEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 121

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
              +P+  SY  +L +YG       AI LF  M    +  NV+    ++   GK    + 
Sbjct: 122 G-IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEK 180

Query: 487 LVRVFGVSIDRGVKPDDRLCGCLLSV 512
              +      RG++P+      ++S+
Sbjct: 181 ANNLIQEMQSRGIEPNSITYSTIISI 206



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/228 (21%), Positives = 101/228 (44%), Gaps = 9/228 (3%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGR--QFQLI 206
           P+  +    L +    + + ++   F  ++ +N+     + YN  M  + +G+  + +  
Sbjct: 125 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNI-EQNVVTYNSMM--MIYGKTLEHEKA 181

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
             L  EM S  IE ++ITYSTII+   +    D A   F+++  +G+  D++ +  ++  
Sbjct: 182 NNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVA 241

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
           Y ++G V       +R +    +PD I       +   +G  +   YV ++    G   +
Sbjct: 242 YERAGLVAHA----KRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKD 297

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK 374
           + V+  ++  + K  K      +FD+M   G  PD   +  ++  YGK
Sbjct: 298 ITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGK 345


>gi|356542070|ref|XP_003539494.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
           chloroplastic-like [Glycine max]
          Length = 729

 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 90/383 (23%), Positives = 188/383 (49%), Gaps = 15/383 (3%)

Query: 119 PRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIK 178
           PR R+    A+ + +  N++      ++ +    ++   L  L  +K   K+  FF W +
Sbjct: 43  PRSRNASKTAKTIANLINSKPFSNGLLSSLLITISKTTVLRTLRLIKDPSKALRFFKWTQ 102

Query: 179 SQNL-FPMETIFYNVTM----KSLRFGRQFQL-IEQLANEMVSNEIELDNITYSTIITCA 232
            +      E+ F  + +    ++L   R F   IE+ +       ++L++  ++++I   
Sbjct: 103 QKGFSHTPESYFIMLEILGRERNLNVARNFLFSIEKHS----KGTVKLEDRFFNSLIRSY 158

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS-GWKPD 291
               LF E+++ F+ M    + P  VT+++++ +  K G+      +Y+  + + G  PD
Sbjct: 159 AEAGLFKESMKLFQTMKSIAVSPSVVTFNSLMSILLKRGRTNMAKEVYDEMLGTYGVSPD 218

Query: 292 PIAFSVLGKMFGESGDYD-GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
              ++VL + F ++   D G R+  +EM+S     ++V YNTL++ + +AGK  +AR+L 
Sbjct: 219 TCTYNVLIRGFCKNSMVDEGFRF-FREMESFNCDADVVTYNTLVDGLCRAGKVRIARNLV 277

Query: 351 DEMVES--GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCA 408
           + M +   GL P+  T T LI+ Y   +  ++AL + E M       + I YNTL+    
Sbjct: 278 NGMGKKCEGLNPNVVTYTTLIRGYCMKQEVEEALVVLEEMTSRGLKPNMITYNTLVKGLC 337

Query: 409 DIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINV 468
           +   +++ + + E MK      PD +++  +++++   GN+D A+++FE M +  +  + 
Sbjct: 338 EAHKLDKMKDVLERMKSDGGFSPDTFTFNTIIHLHCCAGNLDEALKVFESMKKFRIPADS 397

Query: 469 MGCTCLIQCLGKARRIDDLVRVF 491
              + LI+ L +    D   ++F
Sbjct: 398 ASYSTLIRSLCQKGDYDMAEQLF 420



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/303 (24%), Positives = 148/303 (48%), Gaps = 17/303 (5%)

Query: 166 FWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSN-EIELDNIT 224
            +++S   F  +KS  + P    F ++    L+ GR   + +++ +EM+    +  D  T
Sbjct: 163 LFKESMKLFQTMKSIAVSPSVVTFNSLMSILLKRGRT-NMAKEVYDEMLGTYGVSPDTCT 221

Query: 225 YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
           Y+ +I    + ++ DE   +F  M       D VTY+ ++D   ++GKV    +L   G+
Sbjct: 222 YNVLIRGFCKNSMVDEGFRFFREMESFNCDADVVTYNTLVDGLCRAGKVRIARNLVN-GM 280

Query: 285 AS---GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG 341
                G  P+ + ++ L + +    + +    VL+EM S G++PN++ YNTL++ + +A 
Sbjct: 281 GKKCEGLNPNVVTYTTLIRGYCMKQEVEEALVVLEEMTSRGLKPNMITYNTLVKGLCEAH 340

Query: 342 KPGLARSLFDEM-VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           K    + + + M  + G +PD  T   +I ++  A    +AL+++E M++ + P D   Y
Sbjct: 341 KLDKMKDVLERMKSDGGFSPDTFTFNTIIHLHCCAGNLDEALKVFESMKKFRIPADSASY 400

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           +TL+      G  + AE+LF+++          +    +L+ +GS     +   +FE + 
Sbjct: 401 STLIRSLCQKGDYDMAEQLFDEL----------FEKEILLSKFGSKPLAASYNPIFESLC 450

Query: 461 ELG 463
           E G
Sbjct: 451 EHG 453



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 127/269 (47%), Gaps = 6/269 (2%)

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKV---EEVLSLYERGVASGWKPDPIAFS 296
           +A+ +F+   + G      +Y  +L++  +   +      L   E+      K +   F+
Sbjct: 93  KALRFFKWTQQKGFSHTPESYFIMLEILGRERNLNVARNFLFSIEKHSKGTVKLEDRFFN 152

Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356
            L + + E+G +     + Q MKS+ V P++V +N+L+  + K G+  +A+ ++DEM+ +
Sbjct: 153 SLIRSYAEAGLFKESMKLFQTMKSIAVSPSVVTFNSLMSILLKRGRTNMAKEVYDEMLGT 212

Query: 357 -GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEE 415
            G++PD  T   LI+ + K     +    +  M       D + YNTL++     G V  
Sbjct: 213 YGVSPDTCTYNVLIRGFCKNSMVDEGFRFFREMESFNCDADVVTYNTLVDGLCRAGKVRI 272

Query: 416 AERLFEDM-KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
           A  L   M K  +   P+  +YT ++  Y     V+ A+ + EEM+  G+  N++    L
Sbjct: 273 ARNLVNGMGKKCEGLNPNVVTYTTLIRGYCMKQEVEEALVVLEEMTSRGLKPNMITYNTL 332

Query: 475 IQCLGKARRIDDLVRVF-GVSIDRGVKPD 502
           ++ L +A ++D +  V   +  D G  PD
Sbjct: 333 VKGLCEAHKLDKMKDVLERMKSDGGFSPD 361



 Score = 45.8 bits (107), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 71/154 (46%), Gaps = 8/154 (5%)

Query: 218 IELDNITYSTIIT--CAK-----RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
           I  D+ +YST+I   C K        LFDE  E    + K G  P   +Y+ I +   + 
Sbjct: 393 IPADSASYSTLIRSLCQKGDYDMAEQLFDELFEKEILLSKFGSKPLAASYNPIFESLCEH 452

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
           GK ++   +  + +  G + DP +++ +     + G Y+    +L  M      P++ +Y
Sbjct: 453 GKTKKAERVIRQLMKRGTQ-DPQSYTTVIMGHCKEGAYESGYELLMWMLRRDFLPDIEIY 511

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
           + L++   +  KP LA+   ++M++S   P   T
Sbjct: 512 DYLIDGFLQKDKPLLAKETLEKMLKSSYQPKTST 545


>gi|302757525|ref|XP_002962186.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
 gi|300170845|gb|EFJ37446.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
          Length = 855

 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/330 (26%), Positives = 153/330 (46%), Gaps = 3/330 (0%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           F  +   +  P  T  Y V +  L   +      ++  +MV      D ITY+T+I    
Sbjct: 421 FEDMSGSSCVPTRTT-YTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFS 479

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
           + +  DEA +  + M   G  P  VTY +I+  + K   + E   +  +    G +P   
Sbjct: 480 KASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLF 539

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
            F+ L   +   G  +    VL EM + G  P++++Y +L++ +   G+   AR +FD M
Sbjct: 540 IFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSM 599

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
           +E G  PD  T   +I+ + K    + A E+ E M ++    D   YN+L++    +  V
Sbjct: 600 IEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERV 659

Query: 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG-VAINVMGCT 472
           ++A  +++ M  S   KP+  ++  +++     G  D A  LF+EM E   V   ++  T
Sbjct: 660 DQAFGVYDRMVASGI-KPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYT 718

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            LI  LGKA R+ +    F   IDRG+ P+
Sbjct: 719 ILIDGLGKAGRVSEAFSQFQEMIDRGIIPE 748



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 91/377 (24%), Positives = 166/377 (44%), Gaps = 7/377 (1%)

Query: 152 PTRENALLILNSL---KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           PTR    ++++ L   +    +   F  +  +   P +TI Y   +       +     +
Sbjct: 431 PTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVP-DTITYTTLIDGFSKASKMDEARK 489

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L + M++   E   +TY +I+    + ++ +EA E   +M + G  P    ++++L  Y 
Sbjct: 490 LLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYL 549

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
             G+ EE   +     A G  PD I ++ L  +   +G     R+V   M   G  P+ +
Sbjct: 550 SKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDAL 609

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            Y T+++   K G    A  + + M +SG+ PD     +L+  Y K      A  +++RM
Sbjct: 610 TYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRM 669

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
             +    + + +N L++     G  + A  LF++M   D   P   SYT +++  G  G 
Sbjct: 670 VASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDGLGKAGR 729

Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGC 508
           V  A   F+EM + G+       T LI  L KA RI +  ++    +  GV PD +    
Sbjct: 730 VSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSA 789

Query: 509 LLSVV---SLCETSEDV 522
           L++ +   S+ +T+ DV
Sbjct: 790 LITGLIDSSMVDTAWDV 806



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 145/322 (45%), Gaps = 9/322 (2%)

Query: 185 METIFYNVTMKSL----RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDE 240
           ++ I Y   +K L    R     +L E+L     S  +    + Y+ +I    +    ++
Sbjct: 361 LDVISYTTVIKGLADSKRIDEACELFEKLKTAGCSPNV----VAYTAVIDGLLKAGRIED 416

Query: 241 AIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGK 300
            ++ FE M  +  +P   TY+ ++D   K+  + +   ++E+ V  G  PD I ++ L  
Sbjct: 417 GLKNFEDMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLID 476

Query: 301 MFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTP 360
            F ++   D  R +L  M + G +P  V Y +++    K      A+ +  +M E G  P
Sbjct: 477 GFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEP 536

Query: 361 DEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLF 420
                T+L+  Y     A++A ++   M       D ILY +L+++    G V EA  +F
Sbjct: 537 GLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVF 596

Query: 421 EDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK 480
           + M +   C PD  +Y  ++  +   GNV+ A E+ E M++ GV  +      L+    K
Sbjct: 597 DSM-IEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVK 655

Query: 481 ARRIDDLVRVFGVSIDRGVKPD 502
             R+D    V+   +  G+KP+
Sbjct: 656 LERVDQAFGVYDRMVASGIKPN 677



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 78/257 (30%), Positives = 131/257 (50%), Gaps = 3/257 (1%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
           + M+      D +TY TII    +    + A E  E M K+G+ PD   Y++++D Y K 
Sbjct: 597 DSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKL 656

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEM-KSLGVQPNLVV 329
            +V++   +Y+R VASG KP+ + F+VL     + G  D    + +EM +   V P LV 
Sbjct: 657 ERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVS 716

Query: 330 YNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMR 389
           Y  L++ +GKAG+   A S F EM++ G+ P+  T T+LI    KA    +A +L E M 
Sbjct: 717 YTILIDGLGKAGRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMV 776

Query: 390 ENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNV 449
           +     D   Y+ L+    D  +V+ A  +F++M +   C P+  +Y  +   + + G  
Sbjct: 777 KLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEM-MKRGCAPNEVTYKVLRRGFRAAGRA 835

Query: 450 DNAIELFEEMSELGVAI 466
            + +E  ++    GVA+
Sbjct: 836 LD-LEAVKQHFSQGVAM 851



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 153/334 (45%), Gaps = 44/334 (13%)

Query: 203 FQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSA 262
           F+++E    EM++     D   Y  +I    +    DEA E FERM K+G + D VT+  
Sbjct: 144 FKILE----EMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYELFERMRKSGCLGDYVTFMT 199

Query: 263 ILDVYAKSGKVEEVLSLYERGVASGWKP-----DPIAFSVLGKMFGESGDYDGIRYVLQE 317
           +++  +  GK++E   LY   +  G++P     D + F++      ++G  D    + Q 
Sbjct: 200 LIEALSNHGKLDEACELYREMIERGYEPYLEVQDSLIFALC-----KAGKVDEANEIYQT 254

Query: 318 MKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARW 377
           + +  V  + V YN+L++   K G+      L  +MVE    PD +T   L+  + +A  
Sbjct: 255 VVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVECDNFPDIQTYNILVAGFSRANR 314

Query: 378 AKDALELW-------------------------ERMRENKW----PMDFILYNTLLNMCA 408
             DALEL+                         +RM E K      +D I Y T++   A
Sbjct: 315 LDDALELFKLLSSYGCKPNAATYTTIIQGLYDAQRMEEAKAFFDEALDVISYTTVIKGLA 374

Query: 409 DIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINV 468
           D   ++EA  LFE +K +  C P+  +YTA+++     G +++ ++ FE+MS        
Sbjct: 375 DSKRIDEACELFEKLKTAG-CSPNVVAYTAVIDGLLKAGRIEDGLKNFEDMSGSSCVPTR 433

Query: 469 MGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
              T +I  L KA+ + D  +VF   + +G  PD
Sbjct: 434 TTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPD 467



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 129/266 (48%), Gaps = 2/266 (0%)

Query: 239 DEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
           +EA +    M   G  PD + Y++++D+   +G+V E   +++  +  G  PD + +  +
Sbjct: 555 EEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTI 614

Query: 299 GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
            + F + G+ +    +L+ M   GV P+   YN+L++   K  +   A  ++D MV SG+
Sbjct: 615 IQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGI 674

Query: 359 TPDEKTLTALIKIYGKARWAKDALELWERMRE-NKWPMDFILYNTLLNMCADIGLVEEAE 417
            P+  T   L+    K      A  L++ M E ++ P   + Y  L++     G V EA 
Sbjct: 675 KPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDGLGKAGRVSEAF 734

Query: 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
             F++M +     P+ ++YT+++      G +  A +L E+M +LGV  +V   + LI  
Sbjct: 735 SQFQEM-IDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITG 793

Query: 478 LGKARRIDDLVRVFGVSIDRGVKPDD 503
           L  +  +D    VF   + RG  P++
Sbjct: 794 LIDSSMVDTAWDVFQEMMKRGCAPNE 819



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 89/355 (25%), Positives = 159/355 (44%), Gaps = 20/355 (5%)

Query: 152 PTRENALLILNSL---KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           P   N  ++LN L   +   K+   F  + S    P   + YN  +  L    +     +
Sbjct: 18  PDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPT-IVSYNTVISGLASIDKMDEAYK 76

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCN-------LFDEAIEWFERMYKTGLMPDEVTYS 261
             N M+ N  E D I ++T+I    +         L ++A++ F         PD   Y+
Sbjct: 77  FFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQALKRFR--------PDVFLYT 128

Query: 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
           +++  Y K+G ++    + E  +A+G  PD  A+ VL     + G  D    + + M+  
Sbjct: 129 SVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYELFERMRKS 188

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
           G   + V + TL+EA+   GK   A  L+ EM+E G  P  +   +LI    KA    +A
Sbjct: 189 GCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEPYLEVQDSLIFALCKAGKVDEA 248

Query: 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
            E+++ +   K     + YN+L++    +G V++  +L   M   D   PD  +Y  ++ 
Sbjct: 249 NEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVECDNF-PDIQTYNILVA 307

Query: 442 IYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496
            +     +D+A+ELF+ +S  G   N    T +IQ L  A+R+++    F  ++D
Sbjct: 308 GFSRANRLDDALELFKLLSSYGCKPNAATYTTIIQGLYDAQRMEEAKAFFDEALD 362



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 153/326 (46%), Gaps = 3/326 (0%)

Query: 177 IKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCN 236
           + +  L P + +  N+ +  L   R+     +L  EM S   E   ++Y+T+I+     +
Sbjct: 11  MHTTGLMP-DVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTVISGLASID 69

Query: 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS 296
             DEA ++F  M   G  PD + ++ ++  + K+G+ +    L  + +   ++PD   ++
Sbjct: 70  KMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQALKR-FRPDVFLYT 128

Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356
            +   + ++GD D    +L+EM + G  P+   Y  L++ + K G+   A  LF+ M +S
Sbjct: 129 SVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYELFERMRKS 188

Query: 357 GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEA 416
           G   D  T   LI+         +A EL+  M E  +     + ++L+      G V+EA
Sbjct: 189 GCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEPYLEVQDSLIFALCKAGKVDEA 248

Query: 417 ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
             +++ + ++        +Y ++++ Y   G VD+ ++L  +M E     ++     L+ 
Sbjct: 249 NEIYQTV-VAKKVATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVECDNFPDIQTYNILVA 307

Query: 477 CLGKARRIDDLVRVFGVSIDRGVKPD 502
              +A R+DD + +F +    G KP+
Sbjct: 308 GFSRANRLDDALELFKLLSSYGCKPN 333



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 123/261 (47%), Gaps = 2/261 (0%)

Query: 239 DEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
           +EA++  + M+ TGLMPD V  + +L+   K+ K+++ + L+    + G +P  ++++ +
Sbjct: 2   EEALDCLKEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTV 61

Query: 299 GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
                     D        M   G +P+++ + TL+    KAG+P +   L ++ ++   
Sbjct: 62  ISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQALKR-F 120

Query: 359 TPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAER 418
            PD    T++I  Y KA       ++ E M       D   Y  L++    +G V+EA  
Sbjct: 121 RPDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYE 180

Query: 419 LFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL 478
           LFE M+ S  C  D  ++  ++    + G +D A EL+ EM E G    +     LI  L
Sbjct: 181 LFERMRKSG-CLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEPYLEVQDSLIFAL 239

Query: 479 GKARRIDDLVRVFGVSIDRGV 499
            KA ++D+   ++   + + V
Sbjct: 240 CKAGKVDEANEIYQTVVAKKV 260



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 84/183 (45%), Gaps = 8/183 (4%)

Query: 164 LKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSL----RFGRQFQLIEQLANEMVSNEIE 219
           L+   +++  ++ + +  + P   + +NV M  L    +  R F L +++  +   +E+ 
Sbjct: 656 LERVDQAFGVYDRMVASGIKP-NAVTFNVLMHGLFKDGKTDRAFSLFKEMLEK---DEVP 711

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
              ++Y+ +I    +     EA   F+ M   G++P+  TY++++   AK+G++ E   L
Sbjct: 712 PTLVSYTILIDGLGKAGRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKL 771

Query: 280 YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
            E  V  G  PD  A+S L     +S   D    V QEM   G  PN V Y  L      
Sbjct: 772 VEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGFRA 831

Query: 340 AGK 342
           AG+
Sbjct: 832 AGR 834


>gi|3080374|emb|CAA18631.1| putative protein [Arabidopsis thaliana]
 gi|7268739|emb|CAB78946.1| putative protein [Arabidopsis thaliana]
          Length = 814

 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/260 (30%), Positives = 128/260 (49%), Gaps = 5/260 (1%)

Query: 208 QLANEMVSNEIELDNITYSTIIT--CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
           ++  E++     +D ++Y+T+I+  C K+    DEA  + + M K GL PD  TYS ++ 
Sbjct: 515 RIQKEILGRGCVMDRVSYNTLISGCCGKK--KLDEAFMFLDEMVKRGLKPDNYTYSILIC 572

Query: 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325
                 KVEE +  ++    +G  PD   +SV+     ++   +  +    EM S  VQP
Sbjct: 573 GLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQP 632

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
           N VVYN L+ A  ++G+  +A  L ++M   G++P+  T T+LIK        ++A  L+
Sbjct: 633 NTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLF 692

Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445
           E MR      +   Y  L++    +G + + E L  +M  S    P+  +YT M+  Y  
Sbjct: 693 EEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMH-SKNVHPNKITYTVMIGGYAR 751

Query: 446 GGNVDNAIELFEEMSELGVA 465
            GNV  A  L  EM E G+ 
Sbjct: 752 DGNVTEASRLLNEMREKGIV 771



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 138/293 (47%), Gaps = 6/293 (2%)

Query: 185 METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEW 244
           M+ + YN  +      ++        +EMV   ++ DN TYS +I      N  +EAI++
Sbjct: 527 MDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQF 586

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
           ++   + G++PD  TYS ++D   K+ + EE    ++  ++   +P+ + ++ L + +  
Sbjct: 587 WDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCR 646

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
           SG       + ++MK  G+ PN   Y +L++ M    +   A+ LF+EM   GL P+   
Sbjct: 647 SGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFH 706

Query: 365 LTALIKIYGK-ARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
            TALI  YGK  +  K    L E   +N  P + I Y  ++   A  G V EA RL  +M
Sbjct: 707 YTALIDGYGKLGQMVKVECLLREMHSKNVHP-NKITYTVMIGGYARDGNVTEASRLLNEM 765

Query: 424 KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
           +      PD+ +Y   +  Y   G V   +E F+   E   A  + G   LIQ
Sbjct: 766 REKGIV-PDSITYKEFIYGYLKQGGV---LEAFKGSDEENYAAIIEGWNKLIQ 814



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 153/329 (46%), Gaps = 3/329 (0%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           F  + ++ +FP +T   N+ + SL    +FQ   + A ++V   +  D   ++T I    
Sbjct: 203 FPVLANKGMFPSKTT-CNILLTSLVRANEFQKCCE-AFDVVCKGVSPDVYLFTTAINAFC 260

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
           +    +EA++ F +M + G+ P+ VT++ ++D     G+ +E     E+ V  G +P  I
Sbjct: 261 KGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLI 320

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
            +S+L K    +       +VL+EM   G  PN++VYN L+++  +AG    A  + D M
Sbjct: 321 TYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLM 380

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
           V  GL+    T   LIK Y K   A +A  L + M    + ++   + +++ +     + 
Sbjct: 381 VSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMF 440

Query: 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTC 473
           + A R   +M L +   P     T +++     G    A+EL+ +    G  ++      
Sbjct: 441 DSALRFVGEMLLRNM-SPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNA 499

Query: 474 LIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           L+  L +A ++D+  R+    + RG   D
Sbjct: 500 LLHGLCEAGKLDEAFRIQKEILGRGCVMD 528



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 141/315 (44%), Gaps = 5/315 (1%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN  +K      Q    E+L  EM+S    ++  +++++I       +FD A+ +   M 
Sbjct: 392 YNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEML 451

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
              + P     + ++    K GK  + L L+ + +  G+  D    + L     E+G  D
Sbjct: 452 LRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLD 511

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGL--ARSLFDEMVESGLTPDEKTLTA 367
               + +E+   G   + V YNTL+   G  GK  L  A    DEMV+ GL PD  T + 
Sbjct: 512 EAFRIQKEILGRGCVMDRVSYNTLIS--GCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSI 569

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           LI         ++A++ W+  + N    D   Y+ +++ C      EE +  F++M +S 
Sbjct: 570 LICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEM-MSK 628

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
             +P+   Y  ++  Y   G +  A+EL E+M   G++ N    T LI+ +    R+++ 
Sbjct: 629 NVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEA 688

Query: 488 VRVFGVSIDRGVKPD 502
             +F      G++P+
Sbjct: 689 KLLFEEMRMEGLEPN 703



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 131/277 (47%), Gaps = 4/277 (1%)

Query: 241 AIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGK 300
           A++ F  +   G+ P + T + +L    ++ + ++    ++  V  G  PD   F+    
Sbjct: 199 ALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDV-VCKGVSPDVYLFTTAIN 257

Query: 301 MFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTP 360
            F + G  +    +  +M+  GV PN+V +NT+++ +G  G+   A    ++MVE G+ P
Sbjct: 258 AFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEP 317

Query: 361 DEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLF 420
              T + L+K   +A+   DA  + + M +  +P + I+YN L++   + G + +A  + 
Sbjct: 318 TLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEI- 376

Query: 421 EDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK 480
           +D+ +S      + +Y  ++  Y   G  DNA  L +EM  +G  +N    T +I  L  
Sbjct: 377 KDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCS 436

Query: 481 ARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCE 517
               D  +R  G  + R + P   L   L+S   LC+
Sbjct: 437 HLMFDSALRFVGEMLLRNMSPGGGLLTTLIS--GLCK 471



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 73/385 (18%), Positives = 144/385 (37%), Gaps = 69/385 (17%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
            + +N  +  L    ++        +MV   +E   ITYS ++    R     +A    +
Sbjct: 284 VVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLK 343

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
            M K G  P+ + Y+ ++D + ++G + + + + +  V+ G       ++ L K + ++G
Sbjct: 344 EMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNG 403

Query: 307 DYDGIRYVLQEMKSLG-----------------------------------VQPNLVVYN 331
             D    +L+EM S+G                                   + P   +  
Sbjct: 404 QADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLT 463

Query: 332 TLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN 391
           TL+  + K GK   A  L+ + +  G   D +T  AL+    +A    +A  + + +   
Sbjct: 464 TLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGR 523

Query: 392 KWPMDFILYNTLLNMCADIGLVEEAERLFEDM---------------------------- 423
              MD + YNTL++ C     ++EA    ++M                            
Sbjct: 524 GCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEA 583

Query: 424 -KLSDYCK-----PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
            +  D CK     PD Y+Y+ M++        +   E F+EM    V  N +    LI+ 
Sbjct: 584 IQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRA 643

Query: 478 LGKARRIDDLVRVFGVSIDRGVKPD 502
             ++ R+   + +      +G+ P+
Sbjct: 644 YCRSGRLSMALELREDMKHKGISPN 668


>gi|449523421|ref|XP_004168722.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/372 (23%), Positives = 163/372 (43%), Gaps = 39/372 (10%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           +K+  F   +++  + P   + YN  +       + +  + +   M   +IE D+ TY +
Sbjct: 238 KKAKDFVGHMETSGVKP-NIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGS 296

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           +I+   +    +EA + FE M + GL P  V Y+ ++D +   G ++   +  +  +  G
Sbjct: 297 LISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKG 356

Query: 288 WKPDPIAF-SVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
             P    + S++  +F E    D    +++E++  G+ P+ + YN L+    +      A
Sbjct: 357 ISPTMSTYNSLIHALFMEQ-RTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKA 415

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD-------------------------- 380
             L DEM+ SG+ P +KT T+L+ +  K    K+                          
Sbjct: 416 FLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIMFNALIDG 475

Query: 381 ---------ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
                    A EL + M   K P D + +NT++      G VEEA  LF++MK     KP
Sbjct: 476 HCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGI-KP 534

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           D+ S+  +++ Y   G++ +A  +  EM + G    V+    L+Q L K +  D    + 
Sbjct: 535 DHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELL 594

Query: 492 GVSIDRGVKPDD 503
              + +G+ PDD
Sbjct: 595 KEMVSKGMTPDD 606



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 121/251 (48%), Gaps = 1/251 (0%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN  + +L   ++    E +  E+    I  D ITY+ +I    RC    +A    + M 
Sbjct: 364 YNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEML 423

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
            +G+ P + TY+++L V +K  +++E   L+++  + G  PD I F+ L      + +  
Sbjct: 424 ASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIMFNALIDGHCSNSNVK 483

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
           G   +L++M  + V P+ V +NT+++   + GK   AR LFDEM   G+ PD  +   LI
Sbjct: 484 GAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLI 543

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
             Y +    KDA  +   M +  +    + YN L+         + AE L ++M +S   
Sbjct: 544 SGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEM-VSKGM 602

Query: 430 KPDNYSYTAML 440
            PD+ +Y  ++
Sbjct: 603 TPDDTTYFTLI 613



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/329 (23%), Positives = 140/329 (42%), Gaps = 36/329 (10%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  EM    I+    T++ +I    +     +A ++   M  +G+ P+ VTY+ I+  Y 
Sbjct: 208 LYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYC 267

Query: 269 KSGKV-----------------------------------EEVLSLYERGVASGWKPDPI 293
            SG+V                                   EE   ++E  V  G +P  +
Sbjct: 268 SSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAV 327

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
            ++ L   F   G+ D       EM   G+ P +  YN+L+ A+    +   A  +  E+
Sbjct: 328 IYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEI 387

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
            E G++PD  T   LI  Y +   AK A  L + M  +        Y +LL++ +    +
Sbjct: 388 QEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRM 447

Query: 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTC 473
           +EA+ LF+ +  S+   PD   + A+++ + S  NV  A EL ++M  + V  + +    
Sbjct: 448 KEADDLFKKIT-SEGVLPDAIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNT 506

Query: 474 LIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           ++Q   +  ++++   +F     RG+KPD
Sbjct: 507 IMQGHCREGKVEEARELFDEMKRRGIKPD 535



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 97/208 (46%), Gaps = 1/208 (0%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           +K++   + + +  + P +   Y   +  L    + +  + L  ++ S  +  D I ++ 
Sbjct: 413 KKAFLLHDEMLASGIKPTKKT-YTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIMFNA 471

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           +I      +    A E  + M +  + PDEVT++ I+  + + GKVEE   L++     G
Sbjct: 472 LIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRG 531

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
            KPD I+F+ L   +   GD      V  EM   G  P ++ YN L++ + K  +  LA 
Sbjct: 532 IKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAE 591

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKA 375
            L  EMV  G+TPD+ T   LI+   K 
Sbjct: 592 ELLKEMVSKGMTPDDTTYFTLIEGIAKV 619



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/347 (22%), Positives = 155/347 (44%), Gaps = 7/347 (2%)

Query: 222 NITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYE 281
           +I +  +I      N  DEA E F  M + G++P   T +++L ++ K  + E    LY 
Sbjct: 151 SIVFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYA 210

Query: 282 RGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG 341
                  K     F+++  +  + G     +  +  M++ GV+PN+V YNT++     +G
Sbjct: 211 EMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSG 270

Query: 342 KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYN 401
           +   A ++   M    + PD  T  +LI    K    ++A +++E M +       ++YN
Sbjct: 271 RVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYN 330

Query: 402 TLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461
           TL++   + G ++ A   ++D  L     P   +Y ++++        D A  + +E+ E
Sbjct: 331 TLIDGFCNKGNLDMASA-YKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQE 389

Query: 462 LGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVS---LCET 518
            G++ + +    LI    +         +    +  G+KP  +    LL V+S     + 
Sbjct: 390 KGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKE 449

Query: 519 SEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTE 565
           ++D+ K IT  +   P  + F  LI+ + +   N+K  F  ++KD +
Sbjct: 450 ADDLFKKITS-EGVLPDAIMFNALIDGHCSN-SNVKGAFE-LLKDMD 493


>gi|302754868|ref|XP_002960858.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
 gi|300171797|gb|EFJ38397.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
          Length = 699

 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 150/319 (47%), Gaps = 3/319 (0%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + Y   + +L    +F   + +  EMV+     D +T+ST+I    +    ++A    
Sbjct: 125 DVMTYTALVHALCKAGKFDEAQGMLREMVAQGCAPDTVTFSTLIDGLCKFGSEEQAFRVL 184

Query: 246 ERMYKTGLMPDEVTYSAILD-VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
           E + + G+   +  +  I+  +  K   VE    +    +A G+ P  + F+++   F +
Sbjct: 185 EDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCK 244

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
           + D D    +L+ M   G  PN+  +  L+  + KA + G A+ L ++MV  G +P+  T
Sbjct: 245 AKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVMGGCSPNVVT 304

Query: 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
            + +I    K     DA EL++ M     P + + +N L++       +EEA +L+  M+
Sbjct: 305 YSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMR 364

Query: 425 LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV-AINVMGCTCLIQCLGKARR 483
            +  C PD  +Y ++++       VD A +LF+ + E GV A N +  + L        R
Sbjct: 365 ETG-CAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGR 423

Query: 484 IDDLVRVFGVSIDRGVKPD 502
           + D  R+F + +D+G  PD
Sbjct: 424 MADACRIFSMLVDKGFSPD 442



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 88/347 (25%), Positives = 153/347 (44%), Gaps = 4/347 (1%)

Query: 157 ALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSN 216
           AL +L  L   Q++   F    ++   P     Y + ++         +  QL  EM S+
Sbjct: 28  ALDMLCRLNRRQEALALFRNAMARICMP-NKFTYGILIRGFSSAGDLDIAIQLLEEMKSS 86

Query: 217 EIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV 276
             E + + ++T++          EA+E F  M K    PD +TY+A++    K+GK +E 
Sbjct: 87  GFEGNAVVHTTLMKGLCDAGRVVEALEHFRAMAKD-CAPDVMTYTALVHALCKAGKFDEA 145

Query: 277 LSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA 336
             +    VA G  PD + FS L     + G  +    VL+++   G+  +   + T+++ 
Sbjct: 146 QGMLREMVAQGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQR 205

Query: 337 M-GKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPM 395
           +  K     LA  +   ++  G TP       +I  + KA+    A +L E M E     
Sbjct: 206 LCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVP 265

Query: 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIEL 455
           +   +  L+        V EA++L E M +   C P+  +Y+ ++N     G VD+A EL
Sbjct: 266 NVFTFTILITGLCKANRVGEAQQLLEKMVMGG-CSPNVVTYSTVINGLCKQGQVDDAYEL 324

Query: 456 FEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           F+ M       NV+    LI  L KA+RI++  +++    + G  PD
Sbjct: 325 FQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPD 371



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 91/360 (25%), Positives = 150/360 (41%), Gaps = 43/360 (11%)

Query: 181 NLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDE 240
           N+F   TI      K+ R G   QL+E+    MV      + +TYST+I    +    D+
Sbjct: 266 NVFTF-TILITGLCKANRVGEAQQLLEK----MVMGGCSPNVVTYSTVINGLCKQGQVDD 320

Query: 241 AIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGK 300
           A E F+ M +    P+ VT++ ++D   K+ ++EE   LY R   +G  PD I ++ L  
Sbjct: 321 AYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLID 380

Query: 301 MFGESGDYDGIRYVLQEMKSLGVQP-NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
              +S   D    + Q +   GV   N V Y+TL       G+   A  +F  +V+ G +
Sbjct: 381 GLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFS 440

Query: 360 PDEKTLTALIKIYGKARWA-----------------------------------KDALEL 384
           PD  T T+LI  Y K   A                                   + A++L
Sbjct: 441 PDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQL 500

Query: 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM--KLSDYCKPDNYSYTAMLNI 442
           ++ M       D ++YN ++   A     ++A  + E +  K      P + +  A++  
Sbjct: 501 FDSMAARGCTDDALIYNLVVEGMARASKHDKALAVLEQVIDKRDRKFNPSSSAVDALVES 560

Query: 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
               G  D+A +L  +MSE G A  V     L+  L + +R D+  +VF   +  G  P+
Sbjct: 561 LCQVGKTDDAKQLLHKMSERGFAAAVSSYNRLLSGLSRLQRWDEATQVFEAMVSAGPAPE 620



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 82/374 (21%), Positives = 162/374 (43%), Gaps = 43/374 (11%)

Query: 170 SYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTII 229
           +Y  F  ++ +N  P   + +N+ +  L   ++ +   QL + M       D ITY+++I
Sbjct: 321 AYELFQLMERRNC-PPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLI 379

Query: 230 TCAKRCNLFDEAIEWFERMYKTGL-MPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
               +    DEA + F+ + ++G+   + VTYS +   YA  G++ +   ++   V  G+
Sbjct: 380 DGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGRMADACRIFSMLVDKGF 439

Query: 289 KPDPIAF------------------------------------SVLGKMFGESGDYDGIR 312
            PD   +                                    +VLG +F E    +   
Sbjct: 440 SPDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGLF-EGNHTERAI 498

Query: 313 YVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES---GLTPDEKTLTALI 369
            +   M + G   + ++YN ++E M +A K   A ++ +++++       P    + AL+
Sbjct: 499 QLFDSMAARGCTDDALIYNLVVEGMARASKHDKALAVLEQVIDKRDRKFNPSSSAVDALV 558

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
           +   +     DA +L  +M E  +      YN LL+  + +   +EA ++FE M +S   
Sbjct: 559 ESLCQVGKTDDAKQLLHKMSERGFAAAVSSYNRLLSGLSRLQRWDEATQVFEAM-VSAGP 617

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
            P+  +   +++   S   VD+A EL + MS+LG   ++  C  LI    K+ R D   +
Sbjct: 618 APEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRADLARK 677

Query: 490 VFGVSIDRGVKPDD 503
           +     + G++P+D
Sbjct: 678 LLEEMTEAGLEPND 691



 Score = 89.4 bits (220), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 69/303 (22%), Positives = 138/303 (45%), Gaps = 12/303 (3%)

Query: 179 SQNLFPMETIFYNVTMKSLRFGRQ---FQLIEQLANEMVSNEIELDNITYSTIITCAKRC 235
           +Q   P    F  +     +FG +   F+++E +    + N     +  + TII   + C
Sbjct: 154 AQGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNS----DAAFETIIQ--RLC 207

Query: 236 NLFDE---AIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
           N ++    A +    +   G  P  + ++ +++ + K+  ++    L E  +  G  P+ 
Sbjct: 208 NKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNV 267

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
             F++L     ++      + +L++M   G  PN+V Y+T++  + K G+   A  LF  
Sbjct: 268 FTFTILITGLCKANRVGEAQQLLEKMVMGGCSPNVVTYSTVINGLCKQGQVDDAYELFQL 327

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M      P+  T   LI    KA+  ++A +L+ RMRE     D I YN+L++       
Sbjct: 328 MERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQ 387

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
           V+EA +LF+ +  S     +  +Y+ + + Y + G + +A  +F  + + G + ++   T
Sbjct: 388 VDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYT 447

Query: 473 CLI 475
            LI
Sbjct: 448 SLI 450



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/316 (20%), Positives = 138/316 (43%), Gaps = 2/316 (0%)

Query: 183 FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
           F    + +N+ +      +      +L   M+      +  T++ +IT   + N   EA 
Sbjct: 228 FTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQ 287

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
           +  E+M   G  P+ VTYS +++   K G+V++   L++        P+ +  ++L    
Sbjct: 288 QLLEKMVMGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGL 347

Query: 303 GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT-PD 361
            ++   +  R +   M+  G  P+++ YN+L++ + K+ +   A  LF  + ESG++  +
Sbjct: 348 CKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAAN 407

Query: 362 EKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFE 421
             T + L   Y       DA  ++  + +  +  D   Y +L+          E   L E
Sbjct: 408 AVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELVE 467

Query: 422 DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
           +M    +  P   + +A+L     G + + AI+LF+ M+  G   + +    +++ + +A
Sbjct: 468 EMASKGF-PPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARA 526

Query: 482 RRIDDLVRVFGVSIDR 497
            + D  + V    ID+
Sbjct: 527 SKHDKALAVLEQVIDK 542



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 64/126 (50%)

Query: 239 DEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
           D+A +   +M + G      +Y+ +L   ++  + +E   ++E  V++G  P+    +V+
Sbjct: 568 DDAKQLLHKMSERGFAAAVSSYNRLLSGLSRLQRWDEATQVFEAMVSAGPAPEISTVNVV 627

Query: 299 GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
                 +   D    ++Q M  LG  P++   NTL+    K+G+  LAR L +EM E+GL
Sbjct: 628 ISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRADLARKLLEEMTEAGL 687

Query: 359 TPDEKT 364
            P++ T
Sbjct: 688 EPNDTT 693



 Score = 59.3 bits (142), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 80/181 (44%), Gaps = 2/181 (1%)

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382
           V  N+   N  L+ + +  +   A +LF   +     P++ T   LI+ +  A     A+
Sbjct: 18  VGHNVFSCNCALDMLCRLNRRQEALALFRNAMARICMPNKFTYGILIRGFSSAGDLDIAI 77

Query: 383 ELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNI 442
           +L E M+ + +  + +++ TL+    D G V EA   F  M  +  C PD  +YTA+++ 
Sbjct: 78  QLLEEMKSSGFEGNAVVHTTLMKGLCDAGRVVEALEHFRAM--AKDCAPDVMTYTALVHA 135

Query: 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
               G  D A  +  EM   G A + +  + LI  L K    +   RV    I RG+   
Sbjct: 136 LCKAGKFDEAQGMLREMVAQGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNS 195

Query: 503 D 503
           D
Sbjct: 196 D 196



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 60/127 (47%)

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
           +QL ++M          +Y+ +++   R   +DEA + FE M   G  P+  T + ++  
Sbjct: 571 KQLLHKMSERGFAAAVSSYNRLLSGLSRLQRWDEATQVFEAMVSAGPAPEISTVNVVISW 630

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
              + KV++   L +R    G  PD    + L   + +SG  D  R +L+EM   G++PN
Sbjct: 631 LCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRADLARKLLEEMTEAGLEPN 690

Query: 327 LVVYNTL 333
              ++ L
Sbjct: 691 DTTHDLL 697



 Score = 43.1 bits (100), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 8/124 (6%)

Query: 179 SQNLFPMETIFYNVTMKSL----RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKR 234
           S+  F      YN  +  L    R+    Q+ E + +   + EI   N+  S + + AK 
Sbjct: 578 SERGFAAAVSSYNRLLSGLSRLQRWDEATQVFEAMVSAGPAPEISTVNVVISWLCSAAK- 636

Query: 235 CNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIA 294
               D+A E  +RM K G  PD  T + ++  Y KSG+ +    L E    +G +P+   
Sbjct: 637 ---VDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRADLARKLLEEMTEAGLEPNDTT 693

Query: 295 FSVL 298
             +L
Sbjct: 694 HDLL 697


>gi|46518447|gb|AAS99705.1| At1g62720 [Arabidopsis thaliana]
          Length = 426

 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 145/291 (49%), Gaps = 1/291 (0%)

Query: 201 RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTY 260
           + + L+  L + M    I  D  +Y+ +I C  RC+ F  A+    +M K G  PD VT 
Sbjct: 24  KNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTV 83

Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
           S++++ + +  +V + + L  +    G++PD + ++ +     + G  +    +   M+ 
Sbjct: 84  SSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMER 143

Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380
            GV+ + V YN+L+  +  +G+   A  L  +MV   + P+  T TA+I ++ K     +
Sbjct: 144 DGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSE 203

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
           A++L+E M       D   YN+L+N     G V+EA+++  D+ ++  C PD  +Y  ++
Sbjct: 204 AMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQML-DLMVTKGCLPDVVTYNTLI 262

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           N +     VD   +LF EM++ G+  + +    +IQ   +A R D    +F
Sbjct: 263 NGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIF 313



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 152/318 (47%), Gaps = 14/318 (4%)

Query: 192 VTMKSLRFG-----RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
           VT+ SL  G     R F  I+ L ++M       D + Y+TII  + +  L ++A+E F+
Sbjct: 81  VTVSSLINGFCQGNRVFDAID-LVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFD 139

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
           RM + G+  D VTY++++     SG+  +   L    V     P+ I F+ +  +F + G
Sbjct: 140 RMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEG 199

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
            +     + +EM    V P++  YN+L+  +   G+   A+ + D MV  G  PD  T  
Sbjct: 200 KFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYN 259

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
            LI  + K++   +  +L+  M +     D I YNT++      G  + A+ +F  M   
Sbjct: 260 TLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMD-- 317

Query: 427 DYCKPDNYSYTAMLNIYGSGGN--VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484
              +P+  +Y+ +L  YG   N  V+ A+ LFE M +  + +++     +I  + K   +
Sbjct: 318 --SRPNIRTYSILL--YGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNV 373

Query: 485 DDLVRVFGVSIDRGVKPD 502
           +D   +F     +G+KPD
Sbjct: 374 EDAWDLFRSLSCKGLKPD 391



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 148/309 (47%), Gaps = 16/309 (5%)

Query: 183 FPMETIFYNVTMK-SLRFGRQFQLIEQLANEMVSNEIELDNITYSTIIT---CAKRCNLF 238
           F  + + YN  +  S + G     +E L + M  + +  D +TY++++    C+ R   +
Sbjct: 111 FRPDVVIYNTIIDGSCKIGLVNDAVE-LFDRMERDGVRADAVTYNSLVAGLCCSGR---W 166

Query: 239 DEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
            +A      M    ++P+ +T++A++DV+ K GK  E + LYE        PD   ++ L
Sbjct: 167 SDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSL 226

Query: 299 GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
                  G  D  + +L  M + G  P++V YNTL+    K+ +      LF EM + GL
Sbjct: 227 INGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGL 286

Query: 359 TPDEKTLTALIKIYGKARWAKDALELWERM--RENKWPMDFILYNTLLNMCADIGLVEEA 416
             D  T   +I+ Y +A     A E++ RM  R N      +LY   +N       VE+A
Sbjct: 287 VGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSRPNIRTYSILLYGLCMNW-----RVEKA 341

Query: 417 ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
             LFE+M+ S+  + D  +Y  +++     GNV++A +LF  +S  G+  +V+  T +I 
Sbjct: 342 LVLFENMQKSEI-ELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMIS 400

Query: 477 CLGKARRID 485
              + R+ D
Sbjct: 401 GFCRKRQWD 409



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 141/281 (50%), Gaps = 8/281 (2%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + YN  +  L    ++    +L  +MV  +I  + IT++ +I    +   F EA++ +
Sbjct: 149 DAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLY 208

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           E M +  + PD  TY+++++     G+V+E   + +  V  G  PD + ++ L   F +S
Sbjct: 209 EEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKS 268

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
              D    + +EM   G+  + + YNT+++   +AG+P  A+ +F  M      P+ +T 
Sbjct: 269 KRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSR---PNIRTY 325

Query: 366 TALIKIYGKA-RW-AKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
           + L  +YG    W  + AL L+E M++++  +D   YN +++    IG VE+A  LF  +
Sbjct: 326 SIL--LYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSL 383

Query: 424 KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
                 KPD  SYT M++ +      D +  L+ +M E G+
Sbjct: 384 SCKGL-KPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDGL 423



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 119/255 (46%), Gaps = 1/255 (0%)

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M ++  +P  V +S +L   AKS   + V+SL+      G   D  +++++         
Sbjct: 1   MIQSRPLPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSR 60

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
           +     V+ +M   G +P++V  ++L+    +  +   A  L  +M E G  PD      
Sbjct: 61  FVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNT 120

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           +I    K     DA+EL++RM  +    D + YN+L+      G   +A RL  DM + D
Sbjct: 121 IIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRD 180

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
              P+  ++TA+++++   G    A++L+EEM+   V  +V     LI  L    R+D+ 
Sbjct: 181 IV-PNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEA 239

Query: 488 VRVFGVSIDRGVKPD 502
            ++  + + +G  PD
Sbjct: 240 KQMLDLMVTKGCLPD 254



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/203 (20%), Positives = 85/203 (41%), Gaps = 32/203 (15%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN  +  L    +    +Q+ + MV+     D +TY+T+I    +    DE  + F  M 
Sbjct: 223 YNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMA 282

Query: 250 KTGLMPDEVTYSAILDVYAKSGK--------------------------------VEEVL 277
           + GL+ D +TY+ I+  Y ++G+                                VE+ L
Sbjct: 283 QRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSRPNIRTYSILLYGLCMNWRVEKAL 342

Query: 278 SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
            L+E    S  + D   ++++     + G+ +    + + +   G++P++V Y T++   
Sbjct: 343 VLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGF 402

Query: 338 GKAGKPGLARSLFDEMVESGLTP 360
            +  +   +  L+ +M E GL P
Sbjct: 403 CRKRQWDKSDLLYRKMQEDGLLP 425


>gi|224133106|ref|XP_002327962.1| predicted protein [Populus trichocarpa]
 gi|222837371|gb|EEE75750.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/346 (25%), Positives = 163/346 (47%), Gaps = 3/346 (0%)

Query: 159 LILNSLKFWQKSYFFFNWI-KSQNL-FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSN 216
           +++N     Q+  F F+ + K   L F  + + ++  +  L F  +F    +  +EMV++
Sbjct: 124 ILINCFSRLQRVDFAFSVLGKIIKLGFEPDAVTFSSLINGLCFEDKFARAMEFFDEMVAS 183

Query: 217 EIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV 276
             + +  TY+TII    +      A+   ++M K G  PD V Y+ I+D   K   V E 
Sbjct: 184 GYQPNLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDGLCKDRLVSEA 243

Query: 277 LSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA 336
           L ++      G +PD   +S+L      S   +    +  EM SL + P++V +N L++ 
Sbjct: 244 LDIFSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSLNIMPDVVTFNILVDK 303

Query: 337 MGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMD 396
           + K G    A+ +   M+E G+ P+  T  +L+  Y       +A  +++ M       +
Sbjct: 304 LCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKVFEARMVFDAMITKGCMPN 363

Query: 397 FILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELF 456
            + YN L+N       ++EA  LF++M       P+ ++Y  +++     G    A ELF
Sbjct: 364 VVSYNILINGYCKAQRIDEARELFDEMSFRGLI-PNTFNYNTLISGLCQAGRHCEARELF 422

Query: 457 EEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           ++M   G + +++ CT L+  L K   +D+ +R+F    D  +KP+
Sbjct: 423 KDMQAQGCSPDLVTCTILLDSLCKLGYLDNALRLFRAMQDSCLKPN 468



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 129/264 (48%), Gaps = 1/264 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D + Y+TII    +  L  EA++ F  +   G+ PD  TYS ++     S + EE  +L+
Sbjct: 223 DIVIYNTIIDGLCKDRLVSEALDIFSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASALF 282

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
              ++    PD + F++L     + G     + +++ M   GV+PN   YN+L+      
Sbjct: 283 NEMMSLNIMPDVVTFNILVDKLCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQ 342

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
            K   AR +FD M+  G  P+  +   LI  Y KA+   +A EL++ M       +   Y
Sbjct: 343 NKVFEARMVFDAMITKGCMPNVVSYNILINGYCKAQRIDEARELFDEMSFRGLIPNTFNY 402

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           NTL++     G   EA  LF+DM+ +  C PD  + T +L+     G +DNA+ LF  M 
Sbjct: 403 NTLISGLCQAGRHCEARELFKDMQ-AQGCSPDLVTCTILLDSLCKLGYLDNALRLFRAMQ 461

Query: 461 ELGVAINVMGCTCLIQCLGKARRI 484
           +  +  N++    LI+ + K+ +I
Sbjct: 462 DSCLKPNLVTYDILIRAMYKSGKI 485



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 99/390 (25%), Positives = 170/390 (43%), Gaps = 39/390 (10%)

Query: 163 SLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDN 222
           SL   + + F FN +  ++  P    F  +    +R  + +  +  L+  +    IE D 
Sbjct: 61  SLTNIEDALFSFNHMIHKHPLPCIVEFDKLLSALVRI-KHYGTVLSLSKRIELLRIERDV 119

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
             ++ +I C  R    D A     ++ K G  PD VT+S++++      K    +  ++ 
Sbjct: 120 FHFNILINCFSRLQRVDFAFSVLGKIIKLGFEPDAVTFSSLINGLCFEDKFARAMEFFDE 179

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM----- 337
            VASG++P+   ++ + K F + G       +L++M   G +P++V+YNT+++ +     
Sbjct: 180 MVASGYQPNLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDGLCKDRL 239

Query: 338 ------------GKAGKP----------GL--------ARSLFDEMVESGLTPDEKTLTA 367
                       GK  +P          GL        A +LF+EM+   + PD  T   
Sbjct: 240 VSEALDIFSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSLNIMPDVVTFNI 299

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           L+    K     +A  + + M E     ++  YN+L+N       V EA  +F+ M ++ 
Sbjct: 300 LVDKLCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKVFEARMVFDAM-ITK 358

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
            C P+  SY  ++N Y     +D A ELF+EMS  G+  N      LI  L +A R  + 
Sbjct: 359 GCMPNVVSYNILINGYCKAQRIDEARELFDEMSFRGLIPNTFNYNTLISGLCQAGRHCEA 418

Query: 488 VRVFGVSIDRGVKPDDRLCGCLLSVVSLCE 517
             +F     +G  PD   C  LL   SLC+
Sbjct: 419 RELFKDMQAQGCSPDLVTCTILLD--SLCK 446



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 117/231 (50%), Gaps = 1/231 (0%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           F+ IK + + P +   Y++ M  L    Q +    L NEM+S  I  D +T++ ++    
Sbjct: 247 FSEIKGKGVRP-DVFTYSILMHGLCNSDQKEEASALFNEMMSLNIMPDVVTFNILVDKLC 305

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
           +  +  EA    + M + G+ P+  TY+++++ Y    KV E   +++  +  G  P+ +
Sbjct: 306 KEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKVFEARMVFDAMITKGCMPNVV 365

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
           ++++L   + ++   D  R +  EM   G+ PN   YNTL+  + +AG+   AR LF +M
Sbjct: 366 SYNILINGYCKAQRIDEARELFDEMSFRGLIPNTFNYNTLISGLCQAGRHCEARELFKDM 425

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
              G +PD  T T L+    K  +  +AL L+  M+++    + + Y+ L+
Sbjct: 426 QAQGCSPDLVTCTILLDSLCKLGYLDNALRLFRAMQDSCLKPNLVTYDILI 476



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 96/198 (48%), Gaps = 1/198 (0%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            FN + S N+ P + + +N+ +  L         + +   M+   +E +  TY++++   
Sbjct: 281 LFNEMMSLNIMP-DVVTFNILVDKLCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGY 339

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
              N   EA   F+ M   G MP+ V+Y+ +++ Y K+ +++E   L++     G  P+ 
Sbjct: 340 CLQNKVFEARMVFDAMITKGCMPNVVSYNILINGYCKAQRIDEARELFDEMSFRGLIPNT 399

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
             ++ L     ++G +   R + ++M++ G  P+LV    LL+++ K G    A  LF  
Sbjct: 400 FNYNTLISGLCQAGRHCEARELFKDMQAQGCSPDLVTCTILLDSLCKLGYLDNALRLFRA 459

Query: 353 MVESGLTPDEKTLTALIK 370
           M +S L P+  T   LI+
Sbjct: 460 MQDSCLKPNLVTYDILIR 477



 Score = 44.7 bits (104), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 61/133 (45%), Gaps = 1/133 (0%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           F+ + ++   P   + YN+ +      ++     +L +EM    +  +   Y+T+I+   
Sbjct: 352 FDAMITKGCMP-NVVSYNILINGYCKAQRIDEARELFDEMSFRGLIPNTFNYNTLISGLC 410

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
           +     EA E F+ M   G  PD VT + +LD   K G ++  L L+     S  KP+ +
Sbjct: 411 QAGRHCEARELFKDMQAQGCSPDLVTCTILLDSLCKLGYLDNALRLFRAMQDSCLKPNLV 470

Query: 294 AFSVLGKMFGESG 306
            + +L +   +SG
Sbjct: 471 TYDILIRAMYKSG 483


>gi|222639781|gb|EEE67913.1| hypothetical protein OsJ_25766 [Oryza sativa Japonica Group]
          Length = 625

 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/368 (22%), Positives = 167/368 (45%), Gaps = 5/368 (1%)

Query: 139 EAFLRAITEIPHQPTRENALLILNSL---KFWQKSYFFFNWIKS-QNLFPMETIFYNVTM 194
           +  LR + E+  +P   +  ++L  L   K  Q++    + +   +   P++ + Y   +
Sbjct: 156 DIVLRRMPELGCKPDLFSYTILLKGLCDDKTSQQALDLLHIMADHKGRCPLDVVAYTTVI 215

Query: 195 KSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLM 254
             L    Q      L + M+      D +TYS+II+   +    D+A + F RM K G+M
Sbjct: 216 NGLLREGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMDKATQVFTRMVKNGVM 275

Query: 255 PDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYV 314
           PD + Y++++  Y  SGK +E + ++++    G +PD + ++ L     ++G     R +
Sbjct: 276 PDCIMYTSLVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKI 335

Query: 315 LQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK 374
              +   G +P+   Y TLL      G       L D M++ G+         ++  Y K
Sbjct: 336 FDSLVKRGHKPDSTTYGTLLHGYATEGALVEMHDLLDLMMKKGMQLGHHIFNMIMGAYAK 395

Query: 375 ARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNY 434
                +AL ++  MR+     D + Y T+L++    G V++A   F  +K S+   P+  
Sbjct: 396 HNKVDEALLVFSNMRQQGLNPDIVNYGTVLDILCTAGRVDDALSQFNSLK-SEGLAPNIV 454

Query: 435 SYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVS 494
            +T +++   +    D   EL  EM + G+ ++ +    ++  L K  R+ +   +F + 
Sbjct: 455 VFTTLIHGLCTCDKWDKVEELAFEMIDRGICLDTIFFNAIMGNLCKKGRVIEAKNLFDLM 514

Query: 495 IDRGVKPD 502
           +  G++P+
Sbjct: 515 VRIGIEPN 522



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 116/254 (45%), Gaps = 1/254 (0%)

Query: 206 IEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
           +  L + M+   ++L +  ++ I+    + N  DEA+  F  M + GL PD V Y  +LD
Sbjct: 367 MHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLD 426

Query: 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325
           +   +G+V++ LS +    + G  P+ + F+ L         +D +  +  EM   G+  
Sbjct: 427 ILCTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCTCDKWDKVEELAFEMIDRGICL 486

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
           + + +N ++  + K G+   A++LFD MV  G+ P+  T   LI  Y       +A++L 
Sbjct: 487 DTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDGYCLDGKMDEAMKLL 546

Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445
             M  N      + YNT++N  +  G +E+   L  +M       P   +Y  +L     
Sbjct: 547 GVMVFNGVKPSDVTYNTIINGYSQNGRIEDGLTLLREMD-GKGVNPGIVTYEMLLQGLFQ 605

Query: 446 GGNVDNAIELFEEM 459
            G    A EL+  M
Sbjct: 606 AGRTVAAKELYLRM 619



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 95/182 (52%), Gaps = 1/182 (0%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           FN +KS+ L P   + +   +  L    ++  +E+LA EM+   I LD I ++ I+    
Sbjct: 441 FNSLKSEGLAP-NIVVFTTLIHGLCTCDKWDKVEELAFEMIDRGICLDTIFFNAIMGNLC 499

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
           +     EA   F+ M + G+ P+  TY+ ++D Y   GK++E + L    V +G KP  +
Sbjct: 500 KKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDGYCLDGKMDEAMKLLGVMVFNGVKPSDV 559

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
            ++ +   + ++G  +    +L+EM   GV P +V Y  LL+ + +AG+   A+ L+  M
Sbjct: 560 TYNTIINGYSQNGRIEDGLTLLREMDGKGVNPGIVTYEMLLQGLFQAGRTVAAKELYLRM 619

Query: 354 VE 355
           ++
Sbjct: 620 IK 621



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 101/444 (22%), Positives = 185/444 (41%), Gaps = 59/444 (13%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLM--PDEVTYSAILDVYAKSGKVEEVLSLYE 281
           TY  +I C +R    D A     R+  TGL   P+ +  S+   +    G+   +  +  
Sbjct: 101 TYGIVIGCCRRLGRLDLAFATVGRVITTGLRHEPNPLQSSSQGPLCTAGGRAMRMDIVLR 160

Query: 282 RGVASGWKPDPIAFSVLGKMFGES-------------GDYDG------------IRYVLQ 316
           R    G KPD  ++++L K   +               D+ G            I  +L+
Sbjct: 161 RMPELGCKPDLFSYTILLKGLCDDKTSQQALDLLHIMADHKGRCPLDVVAYTTVINGLLR 220

Query: 317 E------------MKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
           E            M   G  P++V Y++++ A+ K      A  +F  MV++G+ PD   
Sbjct: 221 EGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMDKATQVFTRMVKNGVMPDCIM 280

Query: 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
            T+L+  Y  +   K+A+ ++++M  +    D + Y  L++     G   EA ++F+ + 
Sbjct: 281 YTSLVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLV 340

Query: 425 LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484
              + KPD+ +Y  +L+ Y + G +    +L + M + G+ +       ++    K  ++
Sbjct: 341 KRGH-KPDSTTYGTLLHGYATEGALVEMHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKV 399

Query: 485 DDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--------PKL 536
           D+ + VF     +G+ PD    G +L +  LC      G+V   L Q N        P +
Sbjct: 400 DEALLVFSNMRQQGLNPDIVNYGTVLDI--LCT----AGRVDDALSQFNSLKSEGLAPNI 453

Query: 537 VAFLNLIEDNSTGFE-NIKEEFRNVIKDTEVDARRPFCNCLI-DICRNRNLNERAHELLY 594
           V F  LI    T  + +  EE    + D  +     F N ++ ++C+   + E A  L  
Sbjct: 454 VVFTTLIHGLCTCDKWDKVEELAFEMIDRGICLDTIFFNAIMGNLCKKGRVIE-AKNLFD 512

Query: 595 LGTLYGLYP--GLHNKTLDEWSLD 616
           L    G+ P    +N  +D + LD
Sbjct: 513 LMVRIGIEPNTNTYNTLIDGYCLD 536



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 126/277 (45%), Gaps = 8/277 (2%)

Query: 241 AIEWFERMYKTGLM---PDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWK--PDPIAF 295
           AI  F RM + G     P+  TY  ++    + G+++   +   R + +G +  P+P+  
Sbjct: 80  AISLFNRMPRAGATSAAPNIATYGIVIGCCRRLGRLDLAFATVGRVITTGLRHEPNPLQS 139

Query: 296 SVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVE 355
           S  G +    G    +  VL+ M  LG +P+L  Y  LL+ +        A  L   M +
Sbjct: 140 SSQGPLCTAGGRAMRMDIVLRRMPELGCKPDLFSYTILLKGLCDDKTSQQALDLLHIMAD 199

Query: 356 -SGLTP-DEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
             G  P D    T +I    +      A  L++ M +     D + Y+++++  +    +
Sbjct: 200 HKGRCPLDVVAYTTVINGLLREGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAM 259

Query: 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTC 473
           ++A ++F  M + +   PD   YT++++ Y S G    AI +F++M   GV  +V+  T 
Sbjct: 260 DKATQVFTRM-VKNGVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTA 318

Query: 474 LIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
           L+  L K  +  +  ++F   + RG KPD    G LL
Sbjct: 319 LMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLL 355


>gi|297800292|ref|XP_002868030.1| hypothetical protein ARALYDRAFT_914908 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297313866|gb|EFH44289.1| hypothetical protein ARALYDRAFT_914908 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 463

 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 143/310 (46%), Gaps = 38/310 (12%)

Query: 218 IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL 277
           I  D  TY+++I  A R  + D  +  F+ M + G+ PD  +Y+ ++  Y K GK EE  
Sbjct: 79  IRPDVATYNSLIAGAARRLMLDRVLYLFDEMLEWGIYPDLWSYNTLMCCYFKLGKHEEAF 138

Query: 278 S-LYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA 336
             LY+    +G  P P  ++VL     + G  D    + +EM+S   +P L+ YN L+  
Sbjct: 139 RVLYKDLQLAGLSPGPDTYNVLLDALCKCGYIDNALELFKEMQS-KFKPELMTYNILING 197

Query: 337 MGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMD 396
           + K+ + G A+ +  E+  SG TP+  T T ++K+Y K R  +  L+L+  M+   +  D
Sbjct: 198 LCKSRRVGTAKWMLTELKRSGYTPNAVTYTTILKLYIKTRRIRRGLQLFLEMKREGYTYD 257

Query: 397 -----------------------------------FILYNTLLNMCADIGLVEEAERLFE 421
                                               + YNTLLN+    G ++  + L  
Sbjct: 258 GYAYFAVVSALIKTGRTKEAYEYMQELVRKGRRHDIVSYNTLLNLYFKDGNLDAVDDLLG 317

Query: 422 DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
           +++     K D Y++T ++N     G    A E F  M E+G+ +N++ C CL+  L KA
Sbjct: 318 EIERKGM-KADEYTHTIIVNGLLRTGQTRRAEEHFVSMGEMGIGLNLVTCNCLVDGLCKA 376

Query: 482 RRIDDLVRVF 491
             +D  +R F
Sbjct: 377 GHVDRAMRYF 386



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 98/219 (44%), Gaps = 5/219 (2%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           +TY+ +I    +      A      + ++G  P+ VTY+ IL +Y K+ ++   L L+  
Sbjct: 189 MTYNILINGLCKSRRVGTAKWMLTELKRSGYTPNAVTYTTILKLYIKTRRIRRGLQLFLE 248

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
               G+  D  A+  +     ++G        +QE+   G + ++V YNTLL    K G 
Sbjct: 249 MKREGYTYDGYAYFAVVSALIKTGRTKEAYEYMQELVRKGRRHDIVSYNTLLNLYFKDGN 308

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
                 L  E+   G+  DE T T ++    +    + A E +  M E    ++ +  N 
Sbjct: 309 LDAVDDLLGEIERKGMKADEYTHTIIVNGLLRTGQTRRAEEHFVSMGEMGIGLNLVTCNC 368

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
           L++     G V+ A R FE M++      D Y+YT++++
Sbjct: 369 LVDGLCKAGHVDRAMRYFESMEV-----KDEYTYTSVVH 402



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/234 (20%), Positives = 103/234 (44%), Gaps = 3/234 (1%)

Query: 180 QNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFD 239
           Q+ F  E + YN+ +  L   R+    + +  E+  +    + +TY+TI+    +     
Sbjct: 181 QSKFKPELMTYNILINGLCKSRRVGTAKWMLTELKRSGYTPNAVTYTTILKLYIKTRRIR 240

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
             ++ F  M + G   D   Y A++    K+G+ +E     +  V  G + D ++++ L 
Sbjct: 241 RGLQLFLEMKREGYTYDGYAYFAVVSALIKTGRTKEAYEYMQELVRKGRRHDIVSYNTLL 300

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
            ++ + G+ D +  +L E++  G++ +   +  ++  + + G+   A   F  M E G+ 
Sbjct: 301 NLYFKDGNLDAVDDLLGEIERKGMKADEYTHTIIVNGLLRTGQTRRAEEHFVSMGEMGIG 360

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
            +  T   L+    KA     A+  +E M       ++   + + N+C D+  V
Sbjct: 361 LNLVTCNCLVDGLCKAGHVDRAMRYFESMEVKD---EYTYTSVVHNLCKDMRFV 411


>gi|449438480|ref|XP_004137016.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
           mitochondrial-like [Cucumis sativus]
          Length = 651

 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/313 (26%), Positives = 143/313 (45%), Gaps = 3/313 (0%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN  +  L      +  E++   M   +I  D +TY+ +I    +     +A+E F  M 
Sbjct: 221 YNFLVNGLVNSMFIESAEKVFEVMDGGKIVPDTVTYNIMIKGYCKAGKLQKAMEKFRDME 280

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS-VLGKMFGESGDY 308
              + PD++TY  ++         +  LSLY      G +  P ++S V+G +  +    
Sbjct: 281 MKNVKPDKITYMTLIQACYSERDFDTCLSLYLEMEERGLEIPPHSYSLVIGGLCKQRKCM 340

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
           +    V + M   G + N+ +Y  L+++  K G    A  LF+ M   G  PD  T + L
Sbjct: 341 EAYA-VFETMNQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVL 399

Query: 369 IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428
           +    K+    D +EL++  R     ++ + Y +L++     G +E+AE LFE+M     
Sbjct: 400 VNGLCKSGRLDDGMELFDFCRNKGVAINAMFYASLIDGLGKAGRIEDAENLFEEMS-EKG 458

Query: 429 CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLV 488
           C  D+Y Y A+++     G +D A+ LF  M E G    V   T LI  L K  + ++ +
Sbjct: 459 CARDSYCYNAIIDALAKHGKIDQALALFGRMEEEGCDQTVYTFTILIDGLFKEHKNEEAI 518

Query: 489 RVFGVSIDRGVKP 501
           + +   ID+G+ P
Sbjct: 519 KFWDKMIDKGITP 531



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 154/332 (46%), Gaps = 5/332 (1%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           FF W   Q  +  +   +   ++ L F      I  +  E+    + +     +++I   
Sbjct: 134 FFFWAGKQKKYVHKIECHVSLIELLTFSADLVKIRLVFFELKDRGLLMTESAANSLIKSF 193

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWK--P 290
               L +E +  + RM + G+ P   TY+ +++    S  +E    ++E  V  G K  P
Sbjct: 194 GNLGLVEELLWVWRRMKENGIDPSLYTYNFLVNGLVNSMFIESAEKVFE--VMDGGKIVP 251

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
           D + ++++ K + ++G         ++M+   V+P+ + Y TL++A           SL+
Sbjct: 252 DTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKITYMTLIQACYSERDFDTCLSLY 311

Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
            EM E GL     + + +I    K R   +A  ++E M +     +  +Y  L++  +  
Sbjct: 312 LEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYAVFETMNQKGCRANVAIYTALIDSYSKN 371

Query: 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG 470
           G +EEA RLFE MK   + +PD  +Y+ ++N     G +D+ +ELF+     GVAIN M 
Sbjct: 372 GSMEEAMRLFERMKNEGF-EPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKGVAINAMF 430

Query: 471 CTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
              LI  LGKA RI+D   +F    ++G   D
Sbjct: 431 YASLIDGLGKAGRIEDAENLFEEMSEKGCARD 462



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 98/402 (24%), Positives = 174/402 (43%), Gaps = 39/402 (9%)

Query: 160 ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIE 219
           ++NS+ F + +   F  +    + P +T+ YN+ +K      + Q   +   +M    ++
Sbjct: 228 LVNSM-FIESAEKVFEVMDGGKIVP-DTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVK 285

Query: 220 LDNITYSTIITCAKRCNLFD-----------------------------------EAIEW 244
            D ITY T+I        FD                                   EA   
Sbjct: 286 PDKITYMTLIQACYSERDFDTCLSLYLEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYAV 345

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
           FE M + G   +   Y+A++D Y+K+G +EE + L+ER    G++PD + +SVL     +
Sbjct: 346 FETMNQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCK 405

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
           SG  D    +    ++ GV  N + Y +L++ +GKAG+   A +LF+EM E G   D   
Sbjct: 406 SGRLDDGMELFDFCRNKGVAINAMFYASLIDGLGKAGRIEDAENLFEEMSEKGCARDSYC 465

Query: 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
             A+I    K      AL L+ RM E         +  L++        EEA + ++ M 
Sbjct: 466 YNAIIDALAKHGKIDQALALFGRMEEEGCDQTVYTFTILIDGLFKEHKNEEAIKFWDKM- 524

Query: 425 LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484
           +     P   S+ A+       G V  A ++ ++++ +G+ I       +I  L KA+RI
Sbjct: 525 IDKGITPTVASFRALAIGLCLCGKVARACKILDDLAPMGI-IPETAFEDMINTLCKAQRI 583

Query: 485 DDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
            +  ++    +DRG +   R+   L++ +     S+ V K++
Sbjct: 584 KEACKLADGIVDRGREIPGRIRTVLINALRKAGNSDLVIKLM 625


>gi|413936859|gb|AFW71410.1| hypothetical protein ZEAMMB73_528560 [Zea mays]
          Length = 671

 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 147/326 (45%), Gaps = 43/326 (13%)

Query: 177 IKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCN 236
           I S  + P +T  YN  +K L   +Q++  E+L  EM+ N    + +T++T I    +  
Sbjct: 207 IASMPVAP-DTYTYNTVLKGLCCAKQWEQAEELMREMIRNSCHPNEVTFATQIRAFCQNG 265

Query: 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS 296
           L D A+E  E+M K G  PD + YS +++ +++ G+V+E L L                 
Sbjct: 266 LLDRAVELLEQMPKYGCTPDVIIYSTLVNGFSEHGRVDEALKL----------------- 308

Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356
                                + ++  +PN V YN  L+ +  AG+      L  EMV  
Sbjct: 309 ---------------------LNTMLCRPNTVCYNAALKGLCIAGRWEEVGELIAEMVRK 347

Query: 357 GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEA 416
              P++ T + LI    + R  + A+E+ E+M++  +  D + YNT+++  +D    ++A
Sbjct: 348 DCPPNDATFSTLINSLCQNRLVEYAVEVLEQMQKYGYMPDVVSYNTIISCFSDQARADDA 407

Query: 417 ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
            +L + M     CKPD  S+ A+L          +A+EL  +M +    IN M    LI 
Sbjct: 408 LKLLKSM----LCKPDTISFNAVLKCLCKAKRWYDAVELVAKMLKKDCRINEMTFNILID 463

Query: 477 CLGKARRIDDLVRVFGVSIDRGVKPD 502
            L +  ++ D + VF +       PD
Sbjct: 464 SLCQNGQVKDAIEVFELMPKYRCMPD 489



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 122/251 (48%), Gaps = 7/251 (2%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           +TI +N  +K L   +++    +L  +M+  +  ++ +T++ +I    +     +AIE F
Sbjct: 419 DTISFNAVLKCLCKAKRWYDAVELVAKMLKKDCRINEMTFNILIDSLCQNGQVKDAIEVF 478

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           E M K   MPD VTYS++++ +++ G  E    L+    +   + D  +++   K    +
Sbjct: 479 ELMPKYRCMPDIVTYSSLINGFSEQGLDEMAFDLFR---SMPCRADIFSYNATLKGLCMA 535

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
             +D    ++ +M +    PN V +N L+ ++ + G    A  ++++M + G+TPD  T 
Sbjct: 536 ARWDDAGELIADMVTEDCLPNEVTFNILISSLCQKGLVNRAIDVYEQMPKYGITPDIFTY 595

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
            ALI  Y +     DAL+    M       D I YN++L         ++AE+L  +M L
Sbjct: 596 NALINGYSEQGRLDDALKFLSTM---PCEPDTISYNSILKGLCRAERWKDAEKLVTEM-L 651

Query: 426 SDYCKPDNYSY 436
              C P+  ++
Sbjct: 652 RKNCTPNEVTF 662



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 101/410 (24%), Positives = 177/410 (43%), Gaps = 32/410 (7%)

Query: 231 CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
           CA+R     +A    E +  +G   D V+++ ++  Y + G + +   + E   ASG   
Sbjct: 127 CARR--RLADAERVLEALKASG-AADAVSHNTLVAGYCRDGSLGDAERVVEAARASG-TA 182

Query: 291 DPIAFSVLGKMFGESGDY-DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSL 349
           + + ++ L   +  SG   D +R +     S+ V P+   YNT+L+ +  A +   A  L
Sbjct: 183 NVVTYTALIDGYCRSGRLADALRLI----ASMPVAPDTYTYNTVLKGLCCAKQWEQAEEL 238

Query: 350 FDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCAD 409
             EM+ +   P+E T    I+ + +      A+EL E+M +     D I+Y+TL+N  ++
Sbjct: 239 MREMIRNSCHPNEVTFATQIRAFCQNGLLDRAVELLEQMPKYGCTPDVIIYSTLVNGFSE 298

Query: 410 IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVM 469
            G V+EA +L   M     C+P+   Y A L      G  +   EL  EM       N  
Sbjct: 299 HGRVDEALKLLNTM----LCRPNTVCYNAALKGLCIAGRWEEVGELIAEMVRKDCPPNDA 354

Query: 470 GCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCL 529
             + LI  L + R ++  V V       G  PD      ++S  S    ++D  K++  +
Sbjct: 355 TFSTLINSLCQNRLVEYAVEVLEQMQKYGYMPDVVSYNTIISCFSDQARADDALKLLKSM 414

Query: 530 QQANPKLVAF---LNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLID-ICRNRNL 585
               P  ++F   L  +      ++ ++   + + KD  ++    F N LID +C+N  +
Sbjct: 415 -LCKPDTISFNAVLKCLCKAKRWYDAVELVAKMLKKDCRIN-EMTF-NILIDSLCQNGQV 471

Query: 586 NERAHELLYLGTLYGLYP----------GLHNKTLDEWSLDV-RSLSVGA 624
            + A E+  L   Y   P          G   + LDE + D+ RS+   A
Sbjct: 472 KD-AIEVFELMPKYRCMPDIVTYSSLINGFSEQGLDEMAFDLFRSMPCRA 520



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/277 (22%), Positives = 121/277 (43%), Gaps = 9/277 (3%)

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           P     ++  + SL   R  +   ++  +M       D ++Y+TII+C       D+A++
Sbjct: 350 PPNDATFSTLINSLCQNRLVEYAVEVLEQMQKYGYMPDVVSYNTIISCFSDQARADDALK 409

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
             + M      PD ++++A+L    K+ +  + + L  + +    + + + F++L     
Sbjct: 410 LLKSML---CKPDTISFNAVLKCLCKAKRWYDAVELVAKMLKKDCRINEMTFNILIDSLC 466

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM-VESGLTPDE 362
           ++G       V + M      P++V Y++L+    + G   +A  LF  M   + +    
Sbjct: 467 QNGQVKDAIEVFELMPKYRCMPDIVTYSSLINGFSEQGLDEMAFDLFRSMPCRADIFSYN 526

Query: 363 KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED 422
            TL  L      ARW  DA EL   M       + + +N L++     GLV  A  ++E 
Sbjct: 527 ATLKGLCM---AARW-DDAGELIADMVTEDCLPNEVTFNILISSLCQKGLVNRAIDVYEQ 582

Query: 423 MKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           M       PD ++Y A++N Y   G +D+A++    M
Sbjct: 583 MPKYGI-TPDIFTYNALINGYSEQGRLDDALKFLSTM 618


>gi|242047600|ref|XP_002461546.1| hypothetical protein SORBIDRAFT_02g004520 [Sorghum bicolor]
 gi|241924923|gb|EER98067.1| hypothetical protein SORBIDRAFT_02g004520 [Sorghum bicolor]
          Length = 532

 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 95/376 (25%), Positives = 175/376 (46%), Gaps = 27/376 (7%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           P+  T  + +  L  ++   K+      +  +++ P  T + ++    L  G+  + +  
Sbjct: 154 PNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRI 213

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  EM  +    + +TY+ +I C  +     EA E F  M ++G  PD  TY ++L  YA
Sbjct: 214 L-KEMSRDGQRPNVVTYNMLIDCLCKSGFHAEAREIFNSMIQSGPKPDATTYGSLLHGYA 272

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
             G + E+ ++ +  V +G + +   FS+    + + G  D       +M+ LG  P++V
Sbjct: 273 TEGNLVEMNNVKDLMVQNGMRSNHHTFSIEIYAYCKCGRLDEASLTFIKMQQLGFMPDIV 332

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK---IYGKARWAKDALELW 385
            Y T+++ + K G+   A S F +M++ GL+P+  T T LI    +YGK  W K A EL+
Sbjct: 333 TYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPNIITFTTLIHGFSMYGK--WEK-AEELF 389

Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445
             M +   P D  ++  +++     G V EA++LF+ M  +   KP+  SY  M++ Y  
Sbjct: 390 YEMMDRGIPPDVTIFTAMIDRLFKEGKVTEAQKLFDLMPRAG-AKPNVVSYNTMIHGYFI 448

Query: 446 GGNVDNAIELFEE-------------------MSELGVAINVMGCTCLIQCLGKARRIDD 486
            G V   ++L ++                   M  +G+  +V  C  LI    +  RI+D
Sbjct: 449 AGEVGEVMKLLDDMLLIGLKPTAVTFNTLLDGMVSMGLKPDVDTCKTLIDSCCEDGRIED 508

Query: 487 LVRVFGVSIDRGVKPD 502
           ++ +F   + +  K D
Sbjct: 509 ILTLFREMLGKADKTD 524



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 144/299 (48%), Gaps = 3/299 (1%)

Query: 204 QLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAI 263
           +LI  +A +   +    D ++YST+I    +     +A   F +M   G+ P+ VT +++
Sbjct: 105 ELIHMMAED--GDNCPPDVVSYSTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSV 162

Query: 264 LDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGV 323
           +D   K   +++  ++ ++ +     P+   ++ L   +  SG +     +L+EM   G 
Sbjct: 163 IDGLCKVQAMDKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQ 222

Query: 324 QPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALE 383
           +PN+V YN L++ + K+G    AR +F+ M++SG  PD  T  +L+  Y       +   
Sbjct: 223 RPNVVTYNMLIDCLCKSGFHAEAREIFNSMIQSGPKPDATTYGSLLHGYATEGNLVEMNN 282

Query: 384 LWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIY 443
           + + M +N    +   ++  +      G ++EA   F  M+   +  PD  +YT +++  
Sbjct: 283 VKDLMVQNGMRSNHHTFSIEIYAYCKCGRLDEASLTFIKMQQLGF-MPDIVTYTTVIDGL 341

Query: 444 GSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
              G +D+A+  F +M + G++ N++  T LI       + +    +F   +DRG+ PD
Sbjct: 342 CKIGRLDDAMSRFCQMIDDGLSPNIITFTTLIHGFSMYGKWEKAEELFYEMMDRGIPPD 400



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 140/291 (48%), Gaps = 1/291 (0%)

Query: 212 EMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG 271
           +M+ + I  + +T +++I    +    D+A    ++M    +MP+  TY++++  Y  SG
Sbjct: 146 KMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSG 205

Query: 272 KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYN 331
           +  E + + +     G +P+ + +++L     +SG +   R +   M   G +P+   Y 
Sbjct: 206 QWTEAVRILKEMSRDGQRPNVVTYNMLIDCLCKSGFHAEAREIFNSMIQSGPKPDATTYG 265

Query: 332 TLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN 391
           +LL      G      ++ D MV++G+  +  T +  I  Y K     +A   + +M++ 
Sbjct: 266 SLLHGYATEGNLVEMNNVKDLMVQNGMRSNHHTFSIEIYAYCKCGRLDEASLTFIKMQQL 325

Query: 392 KWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDN 451
            +  D + Y T+++    IG +++A   F  M + D   P+  ++T +++ +   G  + 
Sbjct: 326 GFMPDIVTYTTVIDGLCKIGRLDDAMSRFCQM-IDDGLSPNIITFTTLIHGFSMYGKWEK 384

Query: 452 AIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           A ELF EM + G+  +V   T +I  L K  ++ +  ++F +    G KP+
Sbjct: 385 AEELFYEMMDRGIPPDVTIFTAMIDRLFKEGKVTEAQKLFDLMPRAGAKPN 435



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 122/259 (47%), Gaps = 4/259 (1%)

Query: 255 PDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS-VLGKMFGESGDYDGIRY 313
           PD  T+  ++     +G +    +   + + +G + D +AF+ +L  +  +    D +  
Sbjct: 11  PDIATFGILISCCCDAGCLNLGFAALGQIIKTGLRADAVAFTPLLRTLCAKKRTSDAMNI 70

Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG--LTPDEKTLTALIKI 371
           VL+ M  LG  P++  Y+TLL+ +    K   A  L   M E G    PD  + + +I  
Sbjct: 71  VLRRMPELGCTPDVFSYSTLLKGLCAEKKCEEAAELIHMMAEDGDNCPPDVVSYSTVIHG 130

Query: 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
           + K      A  L+ +M ++  P + +  N++++    +  +++AE + + M + ++  P
Sbjct: 131 FFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQM-IDEHIMP 189

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           +  +Y ++++ Y S G    A+ + +EMS  G   NV+    LI CL K+    +   +F
Sbjct: 190 NCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYNMLIDCLCKSGFHAEAREIF 249

Query: 492 GVSIDRGVKPDDRLCGCLL 510
              I  G KPD    G LL
Sbjct: 250 NSMIQSGPKPDATTYGSLL 268



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 79/362 (21%), Positives = 140/362 (38%), Gaps = 76/362 (20%)

Query: 215 SNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAIL---------- 264
           + ++  D  T+  +I+C       +       ++ KTGL  D V ++ +L          
Sbjct: 6   AKKVAPDIATFGILISCCCDAGCLNLGFAALGQIIKTGLRADAVAFTPLLRTLCAKKRTS 65

Query: 265 -----------------DVYAKSG---------KVEEVLSLYERGVASG--WKPDPIAFS 296
                            DV++ S          K EE   L       G    PD +++S
Sbjct: 66  DAMNIVLRRMPELGCTPDVFSYSTLLKGLCAEKKCEEAAELIHMMAEDGDNCPPDVVSYS 125

Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356
            +   F + GD      +  +M   G+ PN+V  N++++ + K      A ++  +M++ 
Sbjct: 126 TVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDE 185

Query: 357 GLTPDEKTLTALIKIY-GKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEE 415
            + P+  T  +LI  Y    +W +    L E  R+ + P + + YN L++     G   E
Sbjct: 186 HIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRP-NVVTYNMLIDCLCKSGFHAE 244

Query: 416 AERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN--------------------------- 448
           A  +F  M  S   KPD  +Y ++L+ Y + GN                           
Sbjct: 245 AREIFNSMIQSGP-KPDATTYGSLLHGYATEGNLVEMNNVKDLMVQNGMRSNHHTFSIEI 303

Query: 449 --------VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
                   +D A   F +M +LG   +++  T +I  L K  R+DD +  F   ID G+ 
Sbjct: 304 YAYCKCGRLDEASLTFIKMQQLGFMPDIVTYTTVIDGLCKIGRLDDAMSRFCQMIDDGLS 363

Query: 501 PD 502
           P+
Sbjct: 364 PN 365


>gi|225433790|ref|XP_002269080.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Vitis vinifera]
          Length = 1045

 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/316 (26%), Positives = 143/316 (45%), Gaps = 17/316 (5%)

Query: 203 FQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSA 262
            +L E+   EM+   + L+ +  S +  C      F++A      M   G +PD  TYS 
Sbjct: 426 LELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSK 485

Query: 263 ILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG 322
           ++ +   + KV+    L+E   ++   PD   +++L   F + G     R    EM   G
Sbjct: 486 VIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDG 545

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382
             PN+V Y  L+ A  KA K   A  LF+ M+  G  P+  T TALI  + K+   + A 
Sbjct: 546 CAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKAC 605

Query: 383 ELWERMRENK--------WPMD--------FILYNTLLNMCADIGLVEEAERLFEDMKLS 426
           +++ RMR N         + +D           Y  L++       V+EA  L + M + 
Sbjct: 606 QIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVE 665

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
             C+P++  Y A+++ +   G +D A  +F +MSE G   NV   + LI  L K +R+D 
Sbjct: 666 G-CEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDL 724

Query: 487 LVRVFGVSIDRGVKPD 502
            ++V    ++    P+
Sbjct: 725 ALKVLSRMLENSCAPN 740



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 155/345 (44%), Gaps = 23/345 (6%)

Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS 261
           +F+    +  EM+S     D  TYS +I      +  D A   FE M    ++PD  TY+
Sbjct: 460 KFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYT 519

Query: 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
            ++D + K G +++    ++  V  G  P+ + ++ L   + ++        + + M S 
Sbjct: 520 ILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSE 579

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK----------------TL 365
           G  PN+V Y  L++   K+G+   A  ++  M  +   PD                  T 
Sbjct: 580 GCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTY 639

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
            AL+    KA   K+A +L + M       + I+Y+ L++    +G ++EA+ +F  M  
Sbjct: 640 GALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSE 699

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
             Y  P+ Y+Y+++++       +D A+++   M E   A NV+  T +I  L K  + D
Sbjct: 700 RGY-GPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTD 758

Query: 486 DLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQ 530
           +  R+  +  ++G  P+      +++  ++ +     GKV  CL+
Sbjct: 759 EAYRLMSMMEEKGCHPN------VVTYTAMIDGFGKAGKVDKCLE 797



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 130/300 (43%), Gaps = 20/300 (6%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
            + Y   + +    R+     +L   M+S     + +TY+ +I    +    ++A + + 
Sbjct: 550 VVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYA 609

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
           RM     +PD   Y  I D     G + +              P+   +  L     ++ 
Sbjct: 610 RMRGNADIPDVDMYFKIDD-----GNIRD--------------PNIFTYGALVDGLCKAH 650

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
                R +L  M   G +PN +VY+ L++   K GK   A+ +F +M E G  P+  T +
Sbjct: 651 KVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYS 710

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
           +LI    K +    AL++  RM EN    + I+Y  +++    +G  +EA RL   M+  
Sbjct: 711 SLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMME-E 769

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
             C P+  +YTAM++ +G  G VD  +EL  +M   G A N +    LI     A  +DD
Sbjct: 770 KGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDD 829



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 78/333 (23%), Positives = 144/333 (43%), Gaps = 20/333 (6%)

Query: 177 IKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCN 236
           I+  N+F      Y   +  L    + +    L + M     E ++I Y  +I    +  
Sbjct: 631 IRDPNIFT-----YGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVG 685

Query: 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS 296
             DEA   F +M + G  P+  TYS+++D   K  +++  L +  R + +   P+ I ++
Sbjct: 686 KLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYT 745

Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356
            +     + G  D    ++  M+  G  PN+V Y  +++  GKAGK      L  +M   
Sbjct: 746 EMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAK 805

Query: 357 GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL-----NMCADIG 411
           G  P+  T   LI     A    DA +L + M++  WP     Y  ++          +G
Sbjct: 806 GCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLG 865

Query: 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG--VAINVM 469
           L++E   + E++ +     P   +Y  +++ +   G ++ A+EL +EMS      A +  
Sbjct: 866 LLDE---IAENVAV-----PIIPAYRILIDSFCKAGRLELALELHKEMSSCTSYSAADKD 917

Query: 470 GCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
             + LI+ L  A ++D    ++   I RG  P+
Sbjct: 918 LYSSLIESLSLASKVDKAFELYADMIKRGGIPE 950



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 87/439 (19%), Positives = 166/439 (37%), Gaps = 81/439 (18%)

Query: 139 EAFLRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLR 198
           + FLR   E  ++    + L ++ + +   K   FF W   Q  +      Y+  ++ L 
Sbjct: 117 QKFLRQFREKLNETLVVDVLSLVKNPELGVK---FFIWAGRQIGYGHTGPVYHALLEVLG 173

Query: 199 FGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEV 258
            G   ++ EQ   E+   + E+     + +I    R  L++ A+E   R+   G  P  +
Sbjct: 174 CGGNDRVPEQFLREIRDEDKEILGKLLNVLIRKCCRNGLWNVALEELGRLKDLGYKPSRL 233

Query: 259 TYSAILDVY-----------------------------------AKSGKVEEVLSLYERG 283
           TY+A++ V+                                    K+G+  E L+L E+ 
Sbjct: 234 TYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAGRWREALALIEK- 292

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
               +K D + ++ +     E+  ++     L  M+S    PN+V Y  LL    +  + 
Sbjct: 293 --EEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQL 350

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
           G  + +   M+  G  P  +   +LI  Y ++     A +L ++M +      +++YN L
Sbjct: 351 GRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNIL 410

Query: 404 L-NMCAD-----IGLVEEAERLFEDM---------------------------------- 423
           +  +C +     + ++E AE+ + +M                                  
Sbjct: 411 IGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIRE 470

Query: 424 KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483
            +S    PD  +Y+ ++ +  +   VDNA  LFEEM    V  +V   T LI    K   
Sbjct: 471 MMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGL 530

Query: 484 IDDLVRVFGVSIDRGVKPD 502
           +    + F   +  G  P+
Sbjct: 531 LQQARKWFDEMVRDGCAPN 549


>gi|357139998|ref|XP_003571561.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 807

 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/368 (24%), Positives = 163/368 (44%), Gaps = 38/368 (10%)

Query: 179 SQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLF 238
           +Q   P   + YN  + +L   R     + +  +MV N ++ DN+TY+T+I        +
Sbjct: 238 TQQGVPPNVVTYNSVIHALCKARAVDKAQGILRQMVGNGVQPDNVTYNTLIHGYSTLGQW 297

Query: 239 DEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
            +A+  F+ M   G++P+ VT S  +    K G++EE    ++  +A G K + I++S L
Sbjct: 298 KQAVRMFKEMTSRGVIPNTVTCSTFVAFLCKHGRIEEAREFFDSMLAKGHKLNIISYSTL 357

Query: 299 GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
              +  +G    +  +   M   G+ PN  V+N L+    K G    A  +F++M + GL
Sbjct: 358 LHGYATAGCLVDMSNLFNLMVRDGIVPNQHVFNILVNGYAKCGMVREAMFIFEDMQKRGL 417

Query: 359 TPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL-------------- 404
            PD  T  A+I  + +     DA++ +  M +     +F +Y  L+              
Sbjct: 418 NPDVLTYLAVIHAFCRMGSMDDAMDKFNHMIDKGVEPNFAVYQCLIQGFCTHGDLVKAEE 477

Query: 405 ----------------------NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNI 442
                                 ++C + G V EA+R+F DM +    K D   +T++++ 
Sbjct: 478 LVYEIRNKGLGPCILSFASLINHLCKE-GRVFEAQRIF-DMIIRTGEKADVNIFTSLIDG 535

Query: 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           Y   G +  A  + + M  +G+  +++    L+    K  RIDD + +F   + +GVKP 
Sbjct: 536 YCLIGKMSEAFRVHDAMVSVGIEPDIVTYGTLVNGCCKNGRIDDGLILFRELLHKGVKPT 595

Query: 503 DRLCGCLL 510
               G +L
Sbjct: 596 TFTYGIIL 603



 Score =  115 bits (288), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 95/381 (24%), Positives = 180/381 (47%), Gaps = 15/381 (3%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS-LYER 282
           TYS +I C  R    D A  +F  + + G+  D +  S++L     + + +E +  L+ R
Sbjct: 105 TYSILIDCCCRARRLDLAFAFFGCLLRQGMKADVIVVSSLLRGLCDAKRTDEAVDVLFHR 164

Query: 283 GVASGWKPDPIAFSVLGKMFGESG----DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMG 338
               G  PD I++S + K   + G      D +R  +++    G   N+VVY+T++  + 
Sbjct: 165 MPELGCVPDAISYSTVLKSVCDDGRSQWALDILRMAVKQ--GGGCPCNVVVYSTVVHGLF 222

Query: 339 KAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFI 398
           K GK G A  LF EM + G+ P+  T  ++I    KAR    A  +  +M  N    D +
Sbjct: 223 KEGKVGEACDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKAQGILRQMVGNGVQPDNV 282

Query: 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458
            YNTL++  + +G  ++A R+F++M  S    P+  + +  +      G ++ A E F+ 
Sbjct: 283 TYNTLIHGYSTLGQWKQAVRMFKEMT-SRGVIPNTVTCSTFVAFLCKHGRIEEAREFFDS 341

Query: 459 MSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCET 518
           M   G  +N++  + L+     A  + D+  +F + +  G+ P+  +   L++  + C  
Sbjct: 342 MLAKGHKLNIISYSTLLHGYATAGCLVDMSNLFNLMVRDGIVPNQHVFNILVNGYAKCGM 401

Query: 519 SEDVGKVITCLQQ--ANPKLVAFLNLIED--NSTGFENIKEEFRNVIKDTEVDARRPFCN 574
             +   +   +Q+   NP ++ +L +I         ++  ++F ++I D  V+       
Sbjct: 402 VREAMFIFEDMQKRGLNPDVLTYLAVIHAFCRMGSMDDAMDKFNHMI-DKGVEPNFAVYQ 460

Query: 575 CLID-ICRNRNLNERAHELLY 594
           CLI   C + +L  +A EL+Y
Sbjct: 461 CLIQGFCTHGDL-VKAEELVY 480



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 139/286 (48%), Gaps = 1/286 (0%)

Query: 206 IEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
           +  L N MV + I  +   ++ ++    +C +  EA+  FE M K GL PD +TY A++ 
Sbjct: 370 MSNLFNLMVRDGIVPNQHVFNILVNGYAKCGMVREAMFIFEDMQKRGLNPDVLTYLAVIH 429

Query: 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325
            + + G +++ +  +   +  G +P+   +  L + F   GD      ++ E+++ G+ P
Sbjct: 430 AFCRMGSMDDAMDKFNHMIDKGVEPNFAVYQCLIQGFCTHGDLVKAEELVYEIRNKGLGP 489

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
            ++ + +L+  + K G+   A+ +FD ++ +G   D    T+LI  Y       +A  + 
Sbjct: 490 CILSFASLINHLCKEGRVFEAQRIFDMIIRTGEKADVNIFTSLIDGYCLIGKMSEAFRVH 549

Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445
           + M       D + Y TL+N C   G +++   LF ++ L    KP  ++Y  +L+    
Sbjct: 550 DAMVSVGIEPDIVTYGTLVNGCCKNGRIDDGLILFREL-LHKGVKPTTFTYGIILDGLFH 608

Query: 446 GGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
            G    A E+F+EM E G+A+ +   + L+  L +    ++ + VF
Sbjct: 609 AGRTAAAKEMFQEMIESGIAVTIPTYSILLTGLCRNNCTEEAITVF 654



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 84/359 (23%), Positives = 157/359 (43%), Gaps = 39/359 (10%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE-WFERM 248
           Y++ +      R+  L       ++   ++ D I  S+++         DEA++  F RM
Sbjct: 106 YSILIDCCCRARRLDLAFAFFGCLLRQGMKADVIVVSSLLRGLCDAKRTDEAVDVLFHRM 165

Query: 249 YKTGLMPDEVTYSAILD------------------------------VYA-------KSG 271
            + G +PD ++YS +L                               VY+       K G
Sbjct: 166 PELGCVPDAISYSTVLKSVCDDGRSQWALDILRMAVKQGGGCPCNVVVYSTVVHGLFKEG 225

Query: 272 KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYN 331
           KV E   L+      G  P+ + ++ +     ++   D  + +L++M   GVQP+ V YN
Sbjct: 226 KVGEACDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKAQGILRQMVGNGVQPDNVTYN 285

Query: 332 TLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN 391
           TL+      G+   A  +F EM   G+ P+  T +  +    K    ++A E ++ M   
Sbjct: 286 TLIHGYSTLGQWKQAVRMFKEMTSRGVIPNTVTCSTFVAFLCKHGRIEEAREFFDSMLAK 345

Query: 392 KWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDN 451
              ++ I Y+TLL+  A  G + +   LF ++ + D   P+ + +  ++N Y   G V  
Sbjct: 346 GHKLNIISYSTLLHGYATAGCLVDMSNLF-NLMVRDGIVPNQHVFNILVNGYAKCGMVRE 404

Query: 452 AIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
           A+ +FE+M + G+  +V+    +I    +   +DD +  F   ID+GV+P+  +  CL+
Sbjct: 405 AMFIFEDMQKRGLNPDVLTYLAVIHAFCRMGSMDDAMDKFNHMIDKGVEPNFAVYQCLI 463



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/326 (22%), Positives = 147/326 (45%), Gaps = 1/326 (0%)

Query: 177 IKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCN 236
           +K     P   + Y+  +  L    +      L +EM    +  + +TY+++I    +  
Sbjct: 201 VKQGGGCPCNVVVYSTVVHGLFKEGKVGEACDLFHEMTQQGVPPNVVTYNSVIHALCKAR 260

Query: 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS 296
             D+A     +M   G+ PD VTY+ ++  Y+  G+ ++ + +++   + G  P+ +  S
Sbjct: 261 AVDKAQGILRQMVGNGVQPDNVTYNTLIHGYSTLGQWKQAVRMFKEMTSRGVIPNTVTCS 320

Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356
                  + G  +  R     M + G + N++ Y+TLL     AG      +LF+ MV  
Sbjct: 321 TFVAFLCKHGRIEEAREFFDSMLAKGHKLNIISYSTLLHGYATAGCLVDMSNLFNLMVRD 380

Query: 357 GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEA 416
           G+ P++     L+  Y K    ++A+ ++E M++     D + Y  +++    +G +++A
Sbjct: 381 GIVPNQHVFNILVNGYAKCGMVREAMFIFEDMQKRGLNPDVLTYLAVIHAFCRMGSMDDA 440

Query: 417 ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
              F  M +    +P+   Y  ++  + + G++  A EL  E+   G+   ++    LI 
Sbjct: 441 MDKFNHM-IDKGVEPNFAVYQCLIQGFCTHGDLVKAEELVYEIRNKGLGPCILSFASLIN 499

Query: 477 CLGKARRIDDLVRVFGVSIDRGVKPD 502
            L K  R+ +  R+F + I  G K D
Sbjct: 500 HLCKEGRVFEAQRIFDMIIRTGEKAD 525



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 111/227 (48%), Gaps = 3/227 (1%)

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           EA   F+ + +TG   D   +++++D Y   GK+ E   +++  V+ G +PD + +  L 
Sbjct: 509 EAQRIFDMIIRTGEKADVNIFTSLIDGYCLIGKMSEAFRVHDAMVSVGIEPDIVTYGTLV 568

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
               ++G  D    + +E+   GV+P    Y  +L+ +  AG+   A+ +F EM+ESG+ 
Sbjct: 569 NGCCKNGRIDDGLILFRELLHKGVKPTTFTYGIILDGLFHAGRTAAAKEMFQEMIESGIA 628

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
               T + L+    +    ++A+ +++++       D ++ N +++        EEAE L
Sbjct: 629 VTIPTYSILLTGLCRNNCTEEAITVFQKLCAMNVKFDIVILNIMISKMFKARRREEAEGL 688

Query: 420 FEDMKLSDY-CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
           F    + DY   P   +YT M+      G+V+ A  +F  M + G++
Sbjct: 689 FA--SIPDYGLVPTVQTYTIMMENLIKEGSVEEAEGVFSVMLKSGLS 733



 Score = 41.6 bits (96), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 39/184 (21%), Positives = 74/184 (40%), Gaps = 35/184 (19%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
           T  Y + +  L    +    +++  EM+ + I +   TYS ++T   R N  +EAI  F+
Sbjct: 596 TFTYGIILDGLFHAGRTAAAKEMFQEMIESGIAVTIPTYSILLTGLCRNNCTEEAITVFQ 655

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
           ++    +  D V  + ++    K+ + EE         A G             +F    
Sbjct: 656 KLCAMNVKFDIVILNIMISKMFKARRREE---------AEG-------------LFASIP 693

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
           DY             G+ P +  Y  ++E + K G    A  +F  M++SGL+P    + 
Sbjct: 694 DY-------------GLVPTVQTYTIMMENLIKEGSVEEAEGVFSVMLKSGLSPTSHFIN 740

Query: 367 ALIK 370
            +++
Sbjct: 741 VIVR 744


>gi|297835316|ref|XP_002885540.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331380|gb|EFH61799.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 841

 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/397 (22%), Positives = 169/397 (42%), Gaps = 45/397 (11%)

Query: 159 LILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEI 218
           +IL     W+++   F W KS+  + +  I YN+ ++ L    +++ ++ L +EM+   I
Sbjct: 158 IILKEQTRWERAVEIFEWFKSKGCYELNVIHYNIMLRILGKACKWRYVQSLWDEMIRKGI 217

Query: 219 ELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEV-------------------- 258
           +  N TY T+I    +  L   A+ W  +M K G+ PDEV                    
Sbjct: 218 KPINSTYGTLIDVYSKGGLKVHALCWLGKMSKIGMQPDEVTTGIVLQMYKKAREFQKAEE 277

Query: 259 ---------------------TYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
                                TY+ ++D Y KSG+++E    ++R +  G  P  + F+ 
Sbjct: 278 FFKKWSCDENKADSHVCLSSYTYNTMIDTYGKSGQIKEASETFKRMLEEGIVPTTVTFNT 337

Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
           +  ++G +G +  +  +++ MK     P+   YN L+    K      A + F EM  +G
Sbjct: 338 MIHVYGNNGQFGEVTSLMKTMK-FHCAPDTRTYNILISLHTKNNDIERAGTYFKEMKGAG 396

Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417
           L PD  +   L+  +      K+A EL   M +N   +D    + L  M  +  ++E++ 
Sbjct: 397 LKPDPVSYRTLLYAFSIRHMVKEAEELIAEMDDNDVEIDEYTQSALTRMYIEAEMLEKSW 456

Query: 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
             F+   ++     + YS  A ++ YG  G +  A  +F    E+     V+    +I+ 
Sbjct: 457 SWFKRFHVAGNMSSEGYS--ANIDAYGERGYLSEAERVFICCQEVN-KRTVLEYNVMIKA 513

Query: 478 LGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVS 514
            G ++  +    +F   +  GV PD      L+ +++
Sbjct: 514 YGISKSCEKACELFESMMSYGVTPDKCTYNTLVQILA 550



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 136/278 (48%), Gaps = 5/278 (1%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YNV +K+    +  +   +L   M+S  +  D  TY+T++      ++ D+A  + E+M 
Sbjct: 507 YNVMIKAYGISKSCEKACELFESMMSYGVTPDKCTYNTLVQILASADMPDKAKCYLEKMR 566

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
           +TG + D + Y A++  + K G++     +Y+  V    +PD + + VL   F ++G+  
Sbjct: 567 ETGYVSDCIPYCAVISSFVKLGQLNMAEEVYKEMVEYNIEPDVVVYGVLINAFADTGNVQ 626

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES---GLTPDEKTLT 366
                ++ MK  G+  N V+YN+L++   K G    A +++ +++ S      PD  T  
Sbjct: 627 QAMSYVEAMKEAGIPENSVIYNSLIKLYTKVGYLDEAEAIYRKLLRSCNETQYPDVYTSN 686

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
            +I +Y +    + A  ++E M++ +   +F  +  +L M    G  EEA ++ + M+  
Sbjct: 687 CMINLYSQRSMVRKAEAIFESMKQRREANEFT-FAMMLCMYKKNGRFEEATQIAKQMREM 745

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
                D  SY ++L +Y   G    A+E F+EM   G+
Sbjct: 746 RIL-TDPLSYNSVLGLYALDGRFKEAVETFKEMVSSGI 782



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 130/269 (48%), Gaps = 7/269 (2%)

Query: 239 DEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
           ++A E FE M   G+ PD+ TY+ ++ + A +   ++     E+   +G+  D I +  +
Sbjct: 521 EKACELFESMMSYGVTPDKCTYNTLVQILASADMPDKAKCYLEKMRETGYVSDCIPYCAV 580

Query: 299 GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
              F + G  +    V +EM    ++P++VVY  L+ A    G    A S  + M E+G+
Sbjct: 581 ISSFVKLGQLNMAEEVYKEMVEYNIEPDVVVYGVLINAFADTGNVQQAMSYVEAMKEAGI 640

Query: 359 TPDEKTLTALIKIYGKARWAKDALELWERM----RENKWPMDFILYNTLLNMCADIGLVE 414
             +     +LIK+Y K  +  +A  ++ ++     E ++P D    N ++N+ +   +V 
Sbjct: 641 PENSVIYNSLIKLYTKVGYLDEAEAIYRKLLRSCNETQYP-DVYTSNCMINLYSQRSMVR 699

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
           +AE +FE MK     + + +++  ML +Y   G  + A ++ ++M E+ +  + +    +
Sbjct: 700 KAEAIFESMKQRR--EANEFTFAMMLCMYKKNGRFEEATQIAKQMREMRILTDPLSYNSV 757

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
           +       R  + V  F   +  G++PDD
Sbjct: 758 LGLYALDGRFKEAVETFKEMVSSGIQPDD 786



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 65/319 (20%), Positives = 127/319 (39%), Gaps = 40/319 (12%)

Query: 111 KRSTYSYNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTRENALLILNSLKFWQKS 170
           KR+   YN  ++   +       C+  E      +T  P + T    + IL S     K+
Sbjct: 501 KRTVLEYNVMIKAYGISKSCEKACELFESMMSYGVT--PDKCTYNTLVQILASADMPDKA 558

Query: 171 YFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIIT 230
             +   ++    +  + I Y   + S     Q  + E++  EMV   IE D + Y  +I 
Sbjct: 559 KCYLEKMRETG-YVSDCIPYCAVISSFVKLGQLNMAEEVYKEMVEYNIEPDVVVYGVLIN 617

Query: 231 CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYE---RGVASG 287
                    +A+ + E M + G+  + V Y++++ +Y K G ++E  ++Y    R     
Sbjct: 618 AFADTGNVQQAMSYVEAMKEAGIPENSVIYNSLIKLYTKVGYLDEAEAIYRKLLRSCNET 677

Query: 288 WKPD----------------------------------PIAFSVLGKMFGESGDYDGIRY 313
             PD                                     F+++  M+ ++G ++    
Sbjct: 678 QYPDVYTSNCMINLYSQRSMVRKAEAIFESMKQRREANEFTFAMMLCMYKKNGRFEEATQ 737

Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYG 373
           + ++M+ + +  + + YN++L      G+   A   F EMV SG+ PD+ T  +L  I  
Sbjct: 738 IAKQMREMRILTDPLSYNSVLGLYALDGRFKEAVETFKEMVSSGIQPDDSTFKSLGTILI 797

Query: 374 KARWAKDALELWERMRENK 392
           K   +K A+   E +R+ +
Sbjct: 798 KLGMSKKAVRKIEEIRKKE 816


>gi|18415314|ref|NP_567587.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|334186696|ref|NP_001190771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|15810161|gb|AAL07224.1| unknown protein [Arabidopsis thaliana]
 gi|332658782|gb|AEE84182.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332658783|gb|AEE84183.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/260 (30%), Positives = 128/260 (49%), Gaps = 5/260 (1%)

Query: 208 QLANEMVSNEIELDNITYSTIIT--CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
           ++  E++     +D ++Y+T+I+  C K+    DEA  + + M K GL PD  TYS ++ 
Sbjct: 526 RIQKEILGRGCVMDRVSYNTLISGCCGKK--KLDEAFMFLDEMVKRGLKPDNYTYSILIC 583

Query: 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325
                 KVEE +  ++    +G  PD   +SV+     ++   +  +    EM S  VQP
Sbjct: 584 GLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQP 643

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
           N VVYN L+ A  ++G+  +A  L ++M   G++P+  T T+LIK        ++A  L+
Sbjct: 644 NTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLF 703

Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445
           E MR      +   Y  L++    +G + + E L  +M  S    P+  +YT M+  Y  
Sbjct: 704 EEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMH-SKNVHPNKITYTVMIGGYAR 762

Query: 446 GGNVDNAIELFEEMSELGVA 465
            GNV  A  L  EM E G+ 
Sbjct: 763 DGNVTEASRLLNEMREKGIV 782



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 138/293 (47%), Gaps = 6/293 (2%)

Query: 185 METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEW 244
           M+ + YN  +      ++        +EMV   ++ DN TYS +I      N  +EAI++
Sbjct: 538 MDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQF 597

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
           ++   + G++PD  TYS ++D   K+ + EE    ++  ++   +P+ + ++ L + +  
Sbjct: 598 WDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCR 657

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
           SG       + ++MK  G+ PN   Y +L++ M    +   A+ LF+EM   GL P+   
Sbjct: 658 SGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFH 717

Query: 365 LTALIKIYGK-ARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
            TALI  YGK  +  K    L E   +N  P + I Y  ++   A  G V EA RL  +M
Sbjct: 718 YTALIDGYGKLGQMVKVECLLREMHSKNVHP-NKITYTVMIGGYARDGNVTEASRLLNEM 776

Query: 424 KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
           +      PD+ +Y   +  Y   G V   +E F+   E   A  + G   LIQ
Sbjct: 777 REKGIV-PDSITYKEFIYGYLKQGGV---LEAFKGSDEENYAAIIEGWNKLIQ 825



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 153/329 (46%), Gaps = 3/329 (0%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           F  + ++ +FP +T   N+ + SL    +FQ   + A ++V   +  D   ++T I    
Sbjct: 214 FPVLANKGMFPSKTT-CNILLTSLVRANEFQKCCE-AFDVVCKGVSPDVYLFTTAINAFC 271

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
           +    +EA++ F +M + G+ P+ VT++ ++D     G+ +E     E+ V  G +P  I
Sbjct: 272 KGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLI 331

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
            +S+L K    +       +VL+EM   G  PN++VYN L+++  +AG    A  + D M
Sbjct: 332 TYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLM 391

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
           V  GL+    T   LIK Y K   A +A  L + M    + ++   + +++ +     + 
Sbjct: 392 VSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMF 451

Query: 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTC 473
           + A R   +M L +   P     T +++     G    A+EL+ +    G  ++      
Sbjct: 452 DSALRFVGEMLLRNM-SPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNA 510

Query: 474 LIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           L+  L +A ++D+  R+    + RG   D
Sbjct: 511 LLHGLCEAGKLDEAFRIQKEILGRGCVMD 539



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 138/313 (44%), Gaps = 1/313 (0%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN  +K      Q    E+L  EM+S    ++  +++++I       +FD A+ +   M 
Sbjct: 403 YNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEML 462

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
              + P     + ++    K GK  + L L+ + +  G+  D    + L     E+G  D
Sbjct: 463 LRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLD 522

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               + +E+   G   + V YNTL+       K   A    DEMV+ GL PD  T + LI
Sbjct: 523 EAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILI 582

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
                    ++A++ W+  + N    D   Y+ +++ C      EE +  F++M +S   
Sbjct: 583 CGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEM-MSKNV 641

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
           +P+   Y  ++  Y   G +  A+EL E+M   G++ N    T LI+ +    R+++   
Sbjct: 642 QPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKL 701

Query: 490 VFGVSIDRGVKPD 502
           +F      G++P+
Sbjct: 702 LFEEMRMEGLEPN 714



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 131/277 (47%), Gaps = 4/277 (1%)

Query: 241 AIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGK 300
           A++ F  +   G+ P + T + +L    ++ + ++    ++  V  G  PD   F+    
Sbjct: 210 ALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDV-VCKGVSPDVYLFTTAIN 268

Query: 301 MFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTP 360
            F + G  +    +  +M+  GV PN+V +NT+++ +G  G+   A    ++MVE G+ P
Sbjct: 269 AFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEP 328

Query: 361 DEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLF 420
              T + L+K   +A+   DA  + + M +  +P + I+YN L++   + G + +A  + 
Sbjct: 329 TLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEI- 387

Query: 421 EDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK 480
           +D+ +S      + +Y  ++  Y   G  DNA  L +EM  +G  +N    T +I  L  
Sbjct: 388 KDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCS 447

Query: 481 ARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCE 517
               D  +R  G  + R + P   L   L+S   LC+
Sbjct: 448 HLMFDSALRFVGEMLLRNMSPGGGLLTTLIS--GLCK 482



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 73/385 (18%), Positives = 144/385 (37%), Gaps = 69/385 (17%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
            + +N  +  L    ++        +MV   +E   ITYS ++    R     +A    +
Sbjct: 295 VVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLK 354

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
            M K G  P+ + Y+ ++D + ++G + + + + +  V+ G       ++ L K + ++G
Sbjct: 355 EMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNG 414

Query: 307 DYDGIRYVLQEMKSLG-----------------------------------VQPNLVVYN 331
             D    +L+EM S+G                                   + P   +  
Sbjct: 415 QADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLT 474

Query: 332 TLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN 391
           TL+  + K GK   A  L+ + +  G   D +T  AL+    +A    +A  + + +   
Sbjct: 475 TLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGR 534

Query: 392 KWPMDFILYNTLLNMCADIGLVEEAERLFEDM---------------------------- 423
              MD + YNTL++ C     ++EA    ++M                            
Sbjct: 535 GCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEA 594

Query: 424 -KLSDYCK-----PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
            +  D CK     PD Y+Y+ M++        +   E F+EM    V  N +    LI+ 
Sbjct: 595 IQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRA 654

Query: 478 LGKARRIDDLVRVFGVSIDRGVKPD 502
             ++ R+   + +      +G+ P+
Sbjct: 655 YCRSGRLSMALELREDMKHKGISPN 679


>gi|449438705|ref|XP_004137128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/372 (23%), Positives = 163/372 (43%), Gaps = 39/372 (10%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           +K+  F   +++  + P   + YN  +       + +  + +   M   +IE D+ TY +
Sbjct: 238 KKAKDFVGHMETSGVKP-NIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGS 296

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           +I+   +    +EA + FE M + GL P  V Y+ ++D +   G ++   +  +  +  G
Sbjct: 297 LISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKG 356

Query: 288 WKPDPIAF-SVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
             P    + S++  +F E    D    +++E++  G+ P+ + YN L+    +      A
Sbjct: 357 ISPTMSTYNSLIHALFMEQ-RTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKA 415

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD-------------------------- 380
             L DEM+ SG+ P +KT T+L+ +  K    K+                          
Sbjct: 416 FLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFNALIDG 475

Query: 381 ---------ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
                    A EL + M   K P D + +NT++      G VEEA  LF++MK     KP
Sbjct: 476 HCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGI-KP 534

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           D+ S+  +++ Y   G++ +A  +  EM + G    V+    L+Q L K +  D    + 
Sbjct: 535 DHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELL 594

Query: 492 GVSIDRGVKPDD 503
              + +G+ PDD
Sbjct: 595 KEMVSKGMTPDD 606



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 121/251 (48%), Gaps = 1/251 (0%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN  + +L   ++    E +  E+    I  D ITY+ +I    RC    +A    + M 
Sbjct: 364 YNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEML 423

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
            +G+ P + TY+++L V +K  +++E   L+++  + G  PD I F+ L      + +  
Sbjct: 424 ASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFNALIDGHCSNSNVK 483

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
           G   +L++M  + V P+ V +NT+++   + GK   AR LFDEM   G+ PD  +   LI
Sbjct: 484 GAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLI 543

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
             Y +    KDA  +   M +  +    + YN L+         + AE L ++M +S   
Sbjct: 544 SGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEM-VSKGM 602

Query: 430 KPDNYSYTAML 440
            PD+ +Y  ++
Sbjct: 603 TPDDTTYFTLI 613



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/329 (23%), Positives = 140/329 (42%), Gaps = 36/329 (10%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  EM    I+    T++ +I    +     +A ++   M  +G+ P+ VTY+ I+  Y 
Sbjct: 208 LYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYC 267

Query: 269 KSGKV-----------------------------------EEVLSLYERGVASGWKPDPI 293
            SG+V                                   EE   ++E  V  G +P  +
Sbjct: 268 SSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAV 327

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
            ++ L   F   G+ D       EM   G+ P +  YN+L+ A+    +   A  +  E+
Sbjct: 328 IYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEI 387

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
            E G++PD  T   LI  Y +   AK A  L + M  +        Y +LL++ +    +
Sbjct: 388 QEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRM 447

Query: 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTC 473
           +EA+ LF+ +  S+   PD   + A+++ + S  NV  A EL ++M  + V  + +    
Sbjct: 448 KEADDLFKKIT-SEGVLPDVIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNT 506

Query: 474 LIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           ++Q   +  ++++   +F     RG+KPD
Sbjct: 507 IMQGHCREGKVEEARELFDEMKRRGIKPD 535



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 78/347 (22%), Positives = 156/347 (44%), Gaps = 7/347 (2%)

Query: 222 NITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYE 281
           +I +  +I      N  DEA E F  M + G++P   T +++L ++ K  + E    LY 
Sbjct: 151 SIVFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYA 210

Query: 282 RGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG 341
                  K     F+++  +  + G     +  +  M++ GV+PN+V YNT++     +G
Sbjct: 211 EMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSG 270

Query: 342 KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYN 401
           +   A ++   M    + PD  T  +LI    K    ++A +++E M +       ++YN
Sbjct: 271 RVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYN 330

Query: 402 TLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461
           TL++   + G ++ A   ++D  L     P   +Y ++++        D A  + +E+ E
Sbjct: 331 TLIDGFCNKGNLDMASA-YKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQE 389

Query: 462 LGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVS---LCET 518
            G++ + +    LI    +         +    +  G+KP  +    LL V+S     + 
Sbjct: 390 KGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKE 449

Query: 519 SEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTE 565
           ++D+ K IT  +   P ++ F  LI+ + +   N+K  F  ++KD +
Sbjct: 450 ADDLFKKITS-EGVLPDVIMFNALIDGHCSN-SNVKGAFE-LLKDMD 493



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 97/208 (46%), Gaps = 1/208 (0%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           +K++   + + +  + P +   Y   +  L    + +  + L  ++ S  +  D I ++ 
Sbjct: 413 KKAFLLHDEMLASGIKPTKKT-YTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFNA 471

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           +I      +    A E  + M +  + PDEVT++ I+  + + GKVEE   L++     G
Sbjct: 472 LIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRG 531

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
            KPD I+F+ L   +   GD      V  EM   G  P ++ YN L++ + K  +  LA 
Sbjct: 532 IKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAE 591

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKA 375
            L  EMV  G+TPD+ T   LI+   K 
Sbjct: 592 ELLKEMVSKGMTPDDTTYFTLIEGIAKV 619



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 68/314 (21%), Positives = 138/314 (43%), Gaps = 2/314 (0%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F  +  + L P   + YN  +          +     +EM+   I     TY+++I   
Sbjct: 313 IFEEMVQKGLRP-SAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHAL 371

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
                 DEA    + + + G+ PD +TY+ +++ Y +    ++   L++  +ASG KP  
Sbjct: 372 FMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTK 431

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
             ++ L  +  +         + +++ S GV P+++++N L++          A  L  +
Sbjct: 432 KTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFNALIDGHCSNSNVKGAFELLKD 491

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M    + PDE T   +++ + +    ++A EL++ M+      D I +NTL++  +  G 
Sbjct: 492 MDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGD 551

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
           +++A R+  +M L     P   +Y A++         D A EL +EM   G+  +     
Sbjct: 552 IKDAFRVRNEM-LDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYF 610

Query: 473 CLIQCLGKARRIDD 486
            LI+ + K    D+
Sbjct: 611 TLIEGIAKVNIPDE 624


>gi|15223927|ref|NP_177262.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169669|sp|Q9C9A2.1|PP112_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g71060, mitochondrial; Flags: Precursor
 gi|12323433|gb|AAG51696.1|AC016972_15 hypothetical protein; 31939-30407 [Arabidopsis thaliana]
 gi|332197036|gb|AEE35157.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 510

 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/359 (24%), Positives = 165/359 (45%), Gaps = 32/359 (8%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           F W ++Q  F   T  YN  ++SL   +QF+LI  L ++M + ++ L   T++ I     
Sbjct: 115 FKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWSLVDDMKAKKL-LSKETFALISRRYA 173

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
           R     EAI  F +M + G   +   ++ +LD  +KS  V +   ++++     ++PD  
Sbjct: 174 RARKVKEAIGAFHKMEEFGFKMESSDFNRMLDTLSKSRNVGDAQKVFDKMKKKRFEPDIK 233

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
           ++++L + +G+  +   +  V +EMK  G +P++V Y  ++ A  KA K   A   F+EM
Sbjct: 234 SYTILLEGWGQELNLLRVDEVNREMKDEGFEPDVVAYGIIINAHCKAKKYEEAIRFFNEM 293

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
            +    P      +LI   G  +   DALE +ER + + +P++   YN L+        +
Sbjct: 294 EQRNCKPSPHIFCSLINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNALVGAYCWSQRM 353

Query: 414 EEAERLFEDMKLSDY-------------------------------CKPDNYSYTAMLNI 442
           E+A +  ++M+L                                  C+P   +Y  M+ +
Sbjct: 354 EDAYKTVDEMRLKGVGPNARTYDIILHHLIRMQRSKEAYEVYQTMSCEPTVSTYEIMVRM 413

Query: 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
           + +   +D AI++++EM   GV   +   + LI  L    ++D+    F   +D G++P
Sbjct: 414 FCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACEYFNEMLDVGIRP 472


>gi|357449533|ref|XP_003595043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484091|gb|AES65294.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1070

 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 131/254 (51%), Gaps = 6/254 (2%)

Query: 212 EMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG 271
           EMV   I  D ++Y+ +I    +    +++  +  +M K G++P++VTY+AI+  Y K G
Sbjct: 258 EMVEKGICHDFVSYTILIDGFSKLGDVEKSFTFLAKMIKEGIIPNKVTYTAIMSAYCKKG 317

Query: 272 KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYN 331
           ++EE   L+ R    G + D   F VL   FG  GD+D +  +L EM+  G+ PN+V YN
Sbjct: 318 RIEEAFGLFVRMKDMGIELDEFVFVVLIDGFGRVGDFDRVFQLLVEMEKRGIGPNVVTYN 377

Query: 332 TLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN 391
            ++  + K G+   A    DE  ++ +T D  T + L+  Y +       L+  +R+ E 
Sbjct: 378 AVVNGLSKYGRTQEA----DEFSKN-VTADVVTYSTLLHGYTEEDNVLGILQTKKRLEEA 432

Query: 392 KWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDN 451
              MD ++ N L+     +   E+   L++ M   D   P++ +Y  M++ Y   G ++ 
Sbjct: 433 GISMDVVMCNVLIRALFMMQAYEDVYALYKGMPEMDLV-PNSITYCTMIDGYCKVGKINE 491

Query: 452 AIELFEEMSELGVA 465
           A+E+F++  +  ++
Sbjct: 492 ALEVFDDFRKTSIS 505



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 119/269 (44%), Gaps = 6/269 (2%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           +TY+ ++    +    DE      +M + GL  D V YS  +  Y +   + EV      
Sbjct: 199 VTYTAVVNALCKLGRVDEVCGLVRKMEEDGLDLDVVLYSVWVCGYVEEKVLVEVFRKMRE 258

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
            V  G   D +++++L   F + GD +     L +M   G+ PN V Y  ++ A  K G+
Sbjct: 259 MVEKGICHDFVSYTILIDGFSKLGDVEKSFTFLAKMIKEGIIPNKVTYTAIMSAYCKKGR 318

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
              A  LF  M + G+  DE     LI  +G+        +L   M +     + + YN 
Sbjct: 319 IEEAFGLFVRMKDMGIELDEFVFVVLIDGFGRVGDFDRVFQLLVEMEKRGIGPNVVTYNA 378

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
           ++N  +  G  +EA+      + S     D  +Y+ +L+ Y    NV   ++  + + E 
Sbjct: 379 VVNGLSKYGRTQEAD------EFSKNVTADVVTYSTLLHGYTEEDNVLGILQTKKRLEEA 432

Query: 463 GVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           G++++V+ C  LI+ L   +  +D+  ++
Sbjct: 433 GISMDVVMCNVLIRALFMMQAYEDVYALY 461



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 113/238 (47%), Gaps = 3/238 (1%)

Query: 250 KTGLMPDEVTY-SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY 308
           KT      VT+  +IL V  K G+  +   L   GV        + + V+     + G  
Sbjct: 672 KTSYNSSAVTFPVSILKVLIKEGRALDAYKLL-MGVQDDLPVMYVDYGVVIHGLCKGGYL 730

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
           +    +   ++  GV  N+V+YN+++  +   G    A  LFD + +  L   E T   L
Sbjct: 731 NKALDLCTLIEKKGVNLNIVIYNSIINGLCHDGCLIEAFRLFDSLEKLNLMTSEITYATL 790

Query: 369 IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428
           I    +  + +DA  ++++M  N +     +YN+LL   + IG +E+A  L  DM+   Y
Sbjct: 791 IYALCREGYLQDAEHVFKKMVLNGFQPKTQVYNSLLVATSKIGQLEKAFELLNDME-KQY 849

Query: 429 CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
            K DN++ ++++N Y   G+++ A+E + +     ++ + +G   +I+ L    R+++
Sbjct: 850 IKFDNFTVSSVINCYCQKGDMEGALEFYYKFKGKDISPDFLGFLYMIRGLCTKGRMEE 907



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/246 (20%), Positives = 100/246 (40%), Gaps = 39/246 (15%)

Query: 180 QNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIIT--CAKRCNL 237
           Q+  P+  + Y V +  L  G        L   +    + L+ + Y++II   C   C +
Sbjct: 707 QDDLPVMYVDYGVVIHGLCKGGYLNKALDLCTLIEKKGVNLNIVIYNSIINGLCHDGCLI 766

Query: 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
             EA   F+ + K  LM  E+TY+ ++    + G +++   ++++ V +G+         
Sbjct: 767 --EAFRLFDSLEKLNLMTSEITYATLIYALCREGYLQDAEHVFKKMVLNGF--------- 815

Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
                                     QP   VYN+LL A  K G+   A  L ++M +  
Sbjct: 816 --------------------------QPKTQVYNSLLVATSKIGQLEKAFELLNDMEKQY 849

Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417
           +  D  T++++I  Y +    + ALE + + +      DF+ +  ++      G +EE  
Sbjct: 850 IKFDNFTVSSVINCYCQKGDMEGALEFYYKFKGKDISPDFLGFLYMIRGLCTKGRMEETR 909

Query: 418 RLFEDM 423
            +  +M
Sbjct: 910 SVLREM 915



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 95/212 (44%), Gaps = 44/212 (20%)

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI----------KIYGKAR-- 376
           V ++++ A  +AGKP L+   FD  +  G  P+  T TA++          ++ G  R  
Sbjct: 167 VCSSVVSAFSRAGKPELSLWFFDNFM--GSRPNLVTYTAVVNALCKLGRVDEVCGLVRKM 224

Query: 377 --------------WA------KDALELWERMR---ENKWPMDFILYNTLLNMCADIGLV 413
                         W       K  +E++ +MR   E     DF+ Y  L++  + +G V
Sbjct: 225 EEDGLDLDVVLYSVWVCGYVEEKVLVEVFRKMREMVEKGICHDFVSYTILIDGFSKLGDV 284

Query: 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTC 473
           E++      M + +   P+  +YTA+++ Y   G ++ A  LF  M ++G+ ++      
Sbjct: 285 EKSFTFLAKM-IKEGIIPNKVTYTAIMSAYCKKGRIEEAFGLFVRMKDMGIELDEFVFVV 343

Query: 474 LIQCLGKARRIDDLVRVFGVSID---RGVKPD 502
           LI   G   R+ D  RVF + ++   RG+ P+
Sbjct: 344 LIDGFG---RVGDFDRVFQLLVEMEKRGIGPN 372



 Score = 46.6 bits (109), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 33/150 (22%), Positives = 64/150 (42%), Gaps = 1/150 (0%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           +++  F+ ++  NL   E  +  +     R G   Q  E +  +MV N  +     Y+++
Sbjct: 767 EAFRLFDSLEKLNLMTSEITYATLIYALCREG-YLQDAEHVFKKMVLNGFQPKTQVYNSL 825

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
           +    +    ++A E    M K  +  D  T S++++ Y + G +E  L  Y +      
Sbjct: 826 LVATSKIGQLEKAFELLNDMEKQYIKFDNFTVSSVINCYCQKGDMEGALEFYYKFKGKDI 885

Query: 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEM 318
            PD + F  + +     G  +  R VL+EM
Sbjct: 886 SPDFLGFLYMIRGLCTKGRMEETRSVLREM 915



 Score = 40.4 bits (93), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 40/200 (20%), Positives = 83/200 (41%), Gaps = 7/200 (3%)

Query: 321 LGVQPNLVV----YNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
           +GVQ +L V    Y  ++  + K G    A  L   + + G+  +     ++I       
Sbjct: 704 MGVQDDLPVMYVDYGVVIHGLCKGGYLNKALDLCTLIEKKGVNLNIVIYNSIINGLCHDG 763

Query: 377 WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY 436
              +A  L++ + +       I Y TL+      G +++AE +F+ M L+ + +P    Y
Sbjct: 764 CLIEAFRLFDSLEKLNLMTSEITYATLIYALCREGYLQDAEHVFKKMVLNGF-QPKTQVY 822

Query: 437 TAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496
            ++L      G ++ A EL  +M +  +  +    + +I C  +   ++  +  +     
Sbjct: 823 NSLLVATSKIGQLEKAFELLNDMEKQYIKFDNFTVSSVINCYCQKGDMEGALEFYYKFKG 882

Query: 497 RGVKPDDRLCGCLLSVVSLC 516
           + + PD    G L  +  LC
Sbjct: 883 KDISPD--FLGFLYMIRGLC 900


>gi|242060656|ref|XP_002451617.1| hypothetical protein SORBIDRAFT_04g004710 [Sorghum bicolor]
 gi|241931448|gb|EES04593.1| hypothetical protein SORBIDRAFT_04g004710 [Sorghum bicolor]
          Length = 593

 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/380 (23%), Positives = 166/380 (43%), Gaps = 9/380 (2%)

Query: 118 NPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTR----ENALLILNSLKFWQKSYFF 173
           +P  +D+  F +K  D  N  E+    + +IP          N  + L   + W+     
Sbjct: 96  SPMAQDILEFVQKGTDVTNIWES----LDKIPQAHDLWDDIVNVAVQLRLNRQWEPIITV 151

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
             WI  ++ F  + I YN+ + +    RQ    E +   ++         TY+ ++    
Sbjct: 152 CEWILYRSSFRPDIICYNLLIDAYGQKRQLNKAESIYMALLEAHCVPTEDTYALLLRAYC 211

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
                  A      M K GL P    Y+A LD   K+   E+ + +Y+R      + +  
Sbjct: 212 NSGQLHRAEGVISEMQKNGLPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTE 271

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
            ++++  ++G++        V  EMK++G +PN+  Y  L+ A  + G    A  +F+EM
Sbjct: 272 TYTLMINVYGKAKQPMSSLKVFNEMKTIGCKPNICTYTALVNAFAREGLCEKAEEVFEEM 331

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
            ++G  PD     AL++ Y +A   + A E++  M       D   YN L++     GL 
Sbjct: 332 QQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAYGRAGLH 391

Query: 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTC 473
           +EAE  F+++K     +P   S+  +L+ +   GNV    E+  ++ + G+  +      
Sbjct: 392 QEAEAAFQELKQQGM-RPTMKSHMLLLSAHAKSGNVARCEEVMAQLHKSGLRPDTFALNA 450

Query: 474 LIQCLGKARRIDDLVRVFGV 493
           ++   G+A R+DD+ R+ G 
Sbjct: 451 MLNAYGRAGRLDDMERLLGA 470



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 93/414 (22%), Positives = 178/414 (42%), Gaps = 12/414 (2%)

Query: 136 NTEEAFLRAITEIPHQPTRENALLIL----NSLKFWQKSYFFFNWIKSQNLFPMETIFYN 191
           N  E+   A+ E    PT +   L+L    NS +   ++    + ++   L P  T+ YN
Sbjct: 182 NKAESIYMALLEAHCVPTEDTYALLLRAYCNSGQL-HRAEGVISEMQKNGLPPTATV-YN 239

Query: 192 VTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKT 251
             +  L   R  +   ++   M       +  TY+ +I    +      +++ F  M   
Sbjct: 240 AYLDGLLKARCSEKAVEVYQRMKKERCRTNTETYTLMINVYGKAKQPMSSLKVFNEMKTI 299

Query: 252 GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGI 311
           G  P+  TY+A+++ +A+ G  E+   ++E    +G +PD  A++ L + +  +G   G 
Sbjct: 300 GCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGA 359

Query: 312 RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371
             +   M+ +G +P+   YN L++A G+AG    A + F E+ + G+ P  K+   L+  
Sbjct: 360 SEIFSLMEHMGCEPDRASYNILVDAYGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSA 419

Query: 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK------L 425
           + K+       E+  ++ ++    D    N +LN     G +++ ERL   M+       
Sbjct: 420 HAKSGNVARCEEVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLLGAMERGGDDDA 479

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
                PD  +Y  ++N+YG  G +D     F  ++  G+A +V+  T  I    + +   
Sbjct: 480 GGGAAPDTSTYNVLVNVYGRAGYLDRMEAAFRALAARGLAADVVTWTSRIGAYARKKEYG 539

Query: 486 DLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAF 539
             + +F   +D G  PD      LL+  S     E V  ++  + +    L A 
Sbjct: 540 RCLEIFEEMVDAGCYPDAGTAKVLLAACSDERQVEQVTAIVRSMHKDAKTLFAL 593


>gi|115482788|ref|NP_001064987.1| Os10g0501700 [Oryza sativa Japonica Group]
 gi|22165069|gb|AAM93686.1| putative leaf protein [Oryza sativa Japonica Group]
 gi|31432904|gb|AAP54480.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|113639596|dbj|BAF26901.1| Os10g0501700 [Oryza sativa Japonica Group]
 gi|125575306|gb|EAZ16590.1| hypothetical protein OsJ_32064 [Oryza sativa Japonica Group]
          Length = 454

 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 155/314 (49%), Gaps = 3/314 (0%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN  M       Q +    +  +M S+ IE D +TY++++    +     EA + F+ M 
Sbjct: 80  YNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLMDYLCKNGKCTEARKIFDSMV 139

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
           K GL PD  TY  +L  YA  G + E+  L    V +G + D   F++L   + +    D
Sbjct: 140 KRGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGMQLDHHVFNILICAYTKQEKVD 199

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
            +  V  +M+  G+ PN V Y T+++ + K G+   A   F++M++ GLTP+    T+LI
Sbjct: 200 EVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAMLNFEQMIDKGLTPNVVVYTSLI 259

Query: 370 K-IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428
             +    +W K    ++E + +   P + + +NT+L+     G V E+++LF D+     
Sbjct: 260 HALCTYDKWEKAEELIFEILDQGINP-NIVFFNTILDSLCKEGRVIESKKLF-DLLGHIG 317

Query: 429 CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLV 488
             PD  +Y+ +++ Y   G +D A++L   M  +G+  + +  + LI    K  R++D +
Sbjct: 318 VNPDVITYSTLIDGYCLAGKMDGAMKLLTGMVSVGLKPDSVTYSTLINGYCKINRMEDAL 377

Query: 489 RVFGVSIDRGVKPD 502
            +F      GV PD
Sbjct: 378 ALFKEMESNGVNPD 391



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 128/254 (50%), Gaps = 1/254 (0%)

Query: 213 MVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK 272
           MV N ++LD+  ++ +I    +    DE +  F +M + GL P+ V Y  ++D   K G+
Sbjct: 173 MVQNGMQLDHHVFNILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGR 232

Query: 273 VEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNT 332
           +++ +  +E+ +  G  P+ + ++ L         ++    ++ E+   G+ PN+V +NT
Sbjct: 233 LDDAMLNFEQMIDKGLTPNVVVYTSLIHALCTYDKWEKAEELIFEILDQGINPNIVFFNT 292

Query: 333 LLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENK 392
           +L+++ K G+   ++ LFD +   G+ PD  T + LI  Y  A     A++L   M    
Sbjct: 293 ILDSLCKEGRVIESKKLFDLLGHIGVNPDVITYSTLIDGYCLAGKMDGAMKLLTGMVSVG 352

Query: 393 WPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNA 452
              D + Y+TL+N    I  +E+A  LF++M+ S+   PD  +Y  +L+          A
Sbjct: 353 LKPDSVTYSTLINGYCKINRMEDALALFKEME-SNGVNPDIITYNIILHGLFRTRRTAAA 411

Query: 453 IELFEEMSELGVAI 466
            EL+  ++E G  +
Sbjct: 412 KELYARITESGTQL 425



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 138/292 (47%), Gaps = 5/292 (1%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
           +EM+   +  D +TY++II    +    D A+E    M    +MP+  TY++I+  Y  S
Sbjct: 35  HEMLDRRVSPDAVTYNSIIAALSKAQAMDRAMEVLTVM----VMPNCFTYNSIMHGYCSS 90

Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
           G+ E+ + ++ +  + G +PD + ++ L     ++G     R +   M   G++P++  Y
Sbjct: 91  GQSEKAIGIFRKMCSDGIEPDVVTYNSLMDYLCKNGKCTEARKIFDSMVKRGLKPDITTY 150

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
            TLL      G       L   MV++G+  D      LI  Y K     + + ++ +MR+
Sbjct: 151 GTLLHGYASKGALVEMHDLLALMVQNGMQLDHHVFNILICAYTKQEKVDEVVLVFSKMRQ 210

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
                + + Y T+++    +G +++A   FE M +     P+   YT++++   +    +
Sbjct: 211 QGLTPNAVNYRTVIDGLCKLGRLDDAMLNFEQM-IDKGLTPNVVVYTSLIHALCTYDKWE 269

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            A EL  E+ + G+  N++    ++  L K  R+ +  ++F +    GV PD
Sbjct: 270 KAEELIFEILDQGINPNIVFFNTILDSLCKEGRVIESKKLFDLLGHIGVNPD 321



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 112/233 (48%), Gaps = 5/233 (2%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLAN--EMVSNEIELDNITYSTIITC 231
           F+ ++ Q L P    +  V     + GR   L + + N  +M+   +  + + Y+++I  
Sbjct: 205 FSKMRQQGLTPNAVNYRTVIDGLCKLGR---LDDAMLNFEQMIDKGLTPNVVVYTSLIHA 261

Query: 232 AKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291
               + +++A E    +   G+ P+ V ++ ILD   K G+V E   L++     G  PD
Sbjct: 262 LCTYDKWEKAEELIFEILDQGINPNIVFFNTILDSLCKEGRVIESKKLFDLLGHIGVNPD 321

Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
            I +S L   +  +G  DG   +L  M S+G++P+ V Y+TL+    K  +   A +LF 
Sbjct: 322 VITYSTLIDGYCLAGKMDGAMKLLTGMVSVGLKPDSVTYSTLINGYCKINRMEDALALFK 381

Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
           EM  +G+ PD  T   ++    + R    A EL+ R+ E+   ++   YN +L
Sbjct: 382 EMESNGVNPDIITYNIILHGLFRTRRTAAAKELYARITESGTQLELSTYNIIL 434



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/201 (23%), Positives = 99/201 (49%), Gaps = 1/201 (0%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           F  +  + L P   + Y   + +L    +++  E+L  E++   I  + + ++TI+    
Sbjct: 240 FEQMIDKGLTP-NVVVYTSLIHALCTYDKWEKAEELIFEILDQGINPNIVFFNTILDSLC 298

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
           +     E+ + F+ +   G+ PD +TYS ++D Y  +GK++  + L    V+ G KPD +
Sbjct: 299 KEGRVIESKKLFDLLGHIGVNPDVITYSTLIDGYCLAGKMDGAMKLLTGMVSVGLKPDSV 358

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
            +S L   + +    +    + +EM+S GV P+++ YN +L  + +  +   A+ L+  +
Sbjct: 359 TYSTLINGYCKINRMEDALALFKEMESNGVNPDIITYNIILHGLFRTRRTAAAKELYARI 418

Query: 354 VESGLTPDEKTLTALIKIYGK 374
            ESG   +  T   ++  + K
Sbjct: 419 TESGTQLELSTYNIILMDFAK 439


>gi|357477565|ref|XP_003609068.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
 gi|355510123|gb|AES91265.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
          Length = 932

 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 137/286 (47%), Gaps = 9/286 (3%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D +TY+T+I    R +   EA E   +M   G  P++ TY++I+D Y K G V +   + 
Sbjct: 364 DVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNSIIDGYCKKGMVVDANRIL 423

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
           +  V  G+KPD   +  L   F + GD D    V ++    G++P+++VYNTL++ + + 
Sbjct: 424 KDAVFKGFKPDEFTYCSLVNGFCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQ 483

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G    A  L +EM E G  PD  T   +I    K     DA  L           D   Y
Sbjct: 484 GLILPALQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDANHLIGDAITKGCIPDIFTY 543

Query: 401 NTLLN-MCADIGL---VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELF 456
           NTL++  C  + L   +E   R++     S    PD  +Y  +LN        +  +E+F
Sbjct: 544 NTLVDGYCRQLKLDSAIELVNRMW-----SQGMTPDVITYNTLLNGLCKTAKSEEVMEIF 598

Query: 457 EEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           + M+E G A N++    +I+ L  ++++++ V + G    +G+ PD
Sbjct: 599 KAMTEKGCAPNIITYNTIIESLCNSKKVNEAVDLLGEMKSKGLTPD 644



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 144/317 (45%), Gaps = 4/317 (1%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           I YN  +K L          QL NEM     + D  TY+ II    +     +A      
Sbjct: 471 IVYNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDANHLIGD 530

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
               G +PD  TY+ ++D Y +  K++  + L  R  + G  PD I ++ L     ++  
Sbjct: 531 AITKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAK 590

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
            + +  + + M   G  PN++ YNT++E++  + K   A  L  EM   GLTPD  +   
Sbjct: 591 SEEVMEIFKAMTEKGCAPNIITYNTIIESLCNSKKVNEAVDLLGEMKSKGLTPDVVSFGT 650

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFI--LYNTLLNMCADIGLVEEAERLFEDMKL 425
           LI  + K      A  L+  M E ++ +      YN +++  ++   ++ A RLF +MK 
Sbjct: 651 LITGFCKVGDLDGAYGLFRGM-EKQYDVSHTTATYNIIISAFSEQLNMKMALRLFSEMK- 708

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
            + C PDNY+Y  +++ +   GNV+   +   E  E G   ++     ++ CL    ++ 
Sbjct: 709 KNGCDPDNYTYRVLIDGFCKTGNVNQGYKFLLENIEKGFIPSLTTFGRVLNCLCVEHKVQ 768

Query: 486 DLVRVFGVSIDRGVKPD 502
           + V +  + + + + PD
Sbjct: 769 EAVGIIHLMVQKDIVPD 785



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 81/349 (23%), Positives = 155/349 (44%), Gaps = 5/349 (1%)

Query: 156 NALL-ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSL-RFGRQFQLIEQLANEM 213
           NA++ IL    ++ +++  +  +K + +   +   Y + +KS  R GR +  +  L N  
Sbjct: 194 NAIMNILVEFGYFNQAHKVYMRMKDKKV-ESDVYTYTIRIKSFCRTGRPYAALRLLRNMP 252

Query: 214 VSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKV 273
           V      + + Y T++T        D A E F+ M +  L PD  T++ ++    K G V
Sbjct: 253 VLGCFS-NAVAYCTVVTGFYEFGDNDRARELFDEMLECCLCPDVTTFNKLVHALCKKGFV 311

Query: 274 EEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTL 333
            E   L+++ +  G  P+   F++  +   + G  D    +L  +   G++P++V YNT+
Sbjct: 312 LESERLFDKVLKRGVCPNLFTFNIFIQGLCKEGSLDRAVRLLGCVSREGLRPDVVTYNTV 371

Query: 334 LEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKW 393
           +  + +  +   A     +MV  G  P++ T  ++I  Y K     DA  + +      +
Sbjct: 372 ICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNSIIDGYCKKGMVVDANRILKDAVFKGF 431

Query: 394 PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAI 453
             D   Y +L+N     G  ++A  +F+D  L    +P    Y  ++      G +  A+
Sbjct: 432 KPDEFTYCSLVNGFCQDGDPDQAMAVFKD-GLGKGLRPSIIVYNTLIKGLCQQGLILPAL 490

Query: 454 ELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           +L  EM+E G   ++     +I  L K   + D   + G +I +G  PD
Sbjct: 491 QLMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDANHLIGDAITKGCIPD 539



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 82/331 (24%), Positives = 140/331 (42%), Gaps = 10/331 (3%)

Query: 178 KSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNI----TYSTIITCAK 233
           K++  F      Y   ++ L F  +F  +E L +EM SN   LDN      Y   +    
Sbjct: 110 KTKQGFKHTLFTYKSMLQKLGFHGKFNEMENLLSEMRSN---LDNTLLEGVYVEAMRFYG 166

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
           R     EA++ FERM      P   +Y+AI+++  + G   +   +Y R      + D  
Sbjct: 167 RKGKIQEAVDTFERMDLFNCDPSVYSYNAIMNILVEFGYFNQAHKVYMRMKDKKVESDVY 226

Query: 294 AFSVLGKMFGESGD-YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
            +++  K F  +G  Y  +R +L+ M  LG   N V Y T++    + G    AR LFDE
Sbjct: 227 TYTIRIKSFCRTGRPYAALR-LLRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRARELFDE 285

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M+E  L PD  T   L+    K  +  ++  L++++ +     +   +N  +      G 
Sbjct: 286 MLECCLCPDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLCKEGS 345

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
           ++ A RL   +   +  +PD  +Y  ++        V  A E   +M   G   N     
Sbjct: 346 LDRAVRLLGCVS-REGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYN 404

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
            +I    K   + D  R+   ++ +G KPD+
Sbjct: 405 SIIDGYCKKGMVVDANRILKDAVFKGFKPDE 435



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/216 (21%), Positives = 86/216 (39%), Gaps = 4/216 (1%)

Query: 175 NWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKR 234
           N + SQ + P + I YN  +  L    + + + ++   M       + ITY+TII     
Sbjct: 564 NRMWSQGMTP-DVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAPNIITYNTIIESLCN 622

Query: 235 CNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI- 293
               +EA++    M   GL PD V++  ++  + K G ++    L+ RG+   +      
Sbjct: 623 SKKVNEAVDLLGEMKSKGLTPDVVSFGTLITGFCKVGDLDGAYGLF-RGMEKQYDVSHTT 681

Query: 294 -AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
             ++++   F E  +      +  EMK  G  P+   Y  L++   K G          E
Sbjct: 682 ATYNIIISAFSEQLNMKMALRLFSEMKKNGCDPDNYTYRVLIDGFCKTGNVNQGYKFLLE 741

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            +E G  P   T   ++         ++A+ +   M
Sbjct: 742 NIEKGFIPSLTTFGRVLNCLCVEHKVQEAVGIIHLM 777


>gi|224130786|ref|XP_002328376.1| predicted protein [Populus trichocarpa]
 gi|222838091|gb|EEE76456.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/268 (29%), Positives = 135/268 (50%), Gaps = 1/268 (0%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L NEMV   +  + +T++ ++    +  +  EA   FE M K G  P+  TY+A++D Y 
Sbjct: 289 LFNEMVGRNVMPNTVTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYC 348

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
            + +++E   + +  V  G  P   ++++L   + +    D  + +L EM    + P+ V
Sbjct: 349 LNNQMDEAQKVLDIMVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTV 408

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            Y+TL++ + + G+P  A +LF EM  SGL PD  T + L+    K     +AL+L + M
Sbjct: 409 TYSTLMQGLCQVGRPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSM 468

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
           +E+K   D +LYN L+      G +E A+ LF  +  +D  +P   +YT M+      G 
Sbjct: 469 QESKIEPDIVLYNILIEGMFIAGKLEVAKELFSKL-FADGIQPTIRTYTIMIKGLLKEGL 527

Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQ 476
            D A ELF +M + G   N      +IQ
Sbjct: 528 SDEAYELFRKMEDDGFLPNSCSYNVIIQ 555



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 147/302 (48%), Gaps = 1/302 (0%)

Query: 201 RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTY 260
           +Q+  +  L N+M    +  +  + + +I C  R N    AI    +M+K G+ PD +T+
Sbjct: 106 KQYSTVVSLCNQMDLFGVTHNVYSLNILINCLCRLNHVVFAISVLGKMFKLGIQPDAITF 165

Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
           + +++     G+++E + L+   V  G +PD I++S +     +SG+      +L++M+ 
Sbjct: 166 NTLINGRCIEGEIKEAVGLFNEMVRRGHQPDVISYSTVINGLCKSGNTSMALQLLRKMEE 225

Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380
            G +PNLV Y T+++++ K      A  L  EMV+ G+ PD  T + ++  +       +
Sbjct: 226 KGCKPNLVAYTTIIDSLCKDTLVNDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNE 285

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
           A  L+  M       + + +  L++     G+V EA  +FE M      +P+ Y+Y A++
Sbjct: 286 ATILFNEMVGRNVMPNTVTFTILVDGLCKEGMVSEARCVFEAMT-KKGAEPNAYTYNALM 344

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
           + Y     +D A ++ + M + G A  V     LI    K RR+D+   +     ++ + 
Sbjct: 345 DGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELT 404

Query: 501 PD 502
           PD
Sbjct: 405 PD 406



 Score =  113 bits (283), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 82/319 (25%), Positives = 144/319 (45%), Gaps = 1/319 (0%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + I Y+  +  L       +  QL  +M     + + + Y+TII    +  L ++A++  
Sbjct: 196 DVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVNDAMDLL 255

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
             M   G+ PD VTYS IL  +   G + E   L+   V     P+ + F++L     + 
Sbjct: 256 SEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGLCKE 315

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G     R V + M   G +PN   YN L++      +   A+ + D MV+ G  P   + 
Sbjct: 316 GMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSY 375

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
             LI  Y K R   +A  L   M E +   D + Y+TL+     +G  +EA  LF++M  
Sbjct: 376 NILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKEM-C 434

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
           S    PD  +Y+ +L+     G++D A++L + M E  +  +++    LI+ +  A +++
Sbjct: 435 SSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILIEGMFIAGKLE 494

Query: 486 DLVRVFGVSIDRGVKPDDR 504
               +F      G++P  R
Sbjct: 495 VAKELFSKLFADGIQPTIR 513



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 108/217 (49%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN+ +      R+    + L  EM   E+  D +TYST++    +     EA+  F+ M 
Sbjct: 375 YNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKEMC 434

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
            +GL+PD +TYS +LD   K G ++E L L +    S  +PD + +++L +    +G  +
Sbjct: 435 SSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILIEGMFIAGKLE 494

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
             + +  ++ + G+QP +  Y  +++ + K G    A  LF +M + G  P+  +   +I
Sbjct: 495 VAKELFSKLFADGIQPTIRTYTIMIKGLLKEGLSDEAYELFRKMEDDGFLPNSCSYNVII 554

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
           + + + + +  A+ L + M   ++  D   +  LL++
Sbjct: 555 QGFLQNQDSSTAIRLIDEMVGKRFSADSSTFQMLLDL 591



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 121/265 (45%), Gaps = 3/265 (1%)

Query: 239 DEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
           D+A+  F RM +    P  V +   L   AK  +   V+SL  +    G   +  + ++L
Sbjct: 74  DDALASFYRMLRMNPRPSVVEFGRFLGSIAKKKQYSTVVSLCNQMDLFGVTHNVYSLNIL 133

Query: 299 GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
                          VL +M  LG+QP+ + +NTL+      G+   A  LF+EMV  G 
Sbjct: 134 INCLCRLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEMVRRGH 193

Query: 359 TPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN-MCADIGLVEEAE 417
            PD  + + +I    K+     AL+L  +M E     + + Y T+++ +C D  LV +A 
Sbjct: 194 QPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDT-LVNDAM 252

Query: 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
            L  +M +     PD  +Y+ +L+ + S G+++ A  LF EM    V  N +  T L+  
Sbjct: 253 DLLSEM-VDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDG 311

Query: 478 LGKARRIDDLVRVFGVSIDRGVKPD 502
           L K   + +   VF     +G +P+
Sbjct: 312 LCKEGMVSEARCVFEAMTKKGAEPN 336



 Score = 45.8 bits (107), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 23/113 (20%), Positives = 56/113 (49%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + YN+ ++ +    + ++ ++L +++ ++ I+    TY+ +I    +  L DEA E F
Sbjct: 476 DIVLYNILIEGMFIAGKLEVAKELFSKLFADGIQPTIRTYTIMIKGLLKEGLSDEAYELF 535

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
            +M   G +P+  +Y+ I+  + ++      + L +  V   +  D   F +L
Sbjct: 536 RKMEDDGFLPNSCSYNVIIQGFLQNQDSSTAIRLIDEMVGKRFSADSSTFQML 588


>gi|298706415|emb|CBJ29411.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 416

 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/305 (26%), Positives = 142/305 (46%), Gaps = 4/305 (1%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMV-SNEIELDNITYSTIITCAKRCNLFDEAIEWFERM 248
           Y++ + +   G ++Q    L  EM   +EI+LD + YS  IT       + EA+     M
Sbjct: 13  YSIGLTACAKGGRWQEALVLLREMEEDDEIKLDVVAYSAAITACANGGRWQEAVAILSDM 72

Query: 249 YKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY 308
              G+ P+ ++ +A +  + ++G+ +  LS+      +G  PD I+++      G +G  
Sbjct: 73  PNVGVRPNVISCNAAIKAWGEAGQWQHALSILRGMSKAGLSPDAISYNTAISALGVAGQS 132

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAM--GKAGKPGLARSLFDEMVESGLTPDEKTLT 366
           +  + ++ EM  LG++P +V YN+ + A+  G  G+   A +L   M  +G+TPD  T  
Sbjct: 133 EQAQELMSEMSRLGIEPTVVTYNSAIAAIARGGGGQWRQAVALVKHMSLAGVTPDSITYN 192

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
           +LI   GK    K AL + + M++     D I Y+  ++ C + G  E +  L  + K S
Sbjct: 193 SLIVACGKGGQWKQALSVLKGMKKQGLSCDIIGYSAAISACGEAGQWEYSVGLLAEAK-S 251

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
               PD  +YTA +         D A  L +EM   G+  +    T LI  LG   +   
Sbjct: 252 LGITPDLVAYTAAVTACADANQRDKATFLLKEMLSAGIRPDAAAFTSLIAALGHDGQWTQ 311

Query: 487 LVRVF 491
            V + 
Sbjct: 312 AVEIL 316



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 142/299 (47%), Gaps = 15/299 (5%)

Query: 123 DLKLFARKLNDCDNT---EEAFLRAITEIPHQPTRENALLILNSLKFW------QKSYFF 173
           D+  ++  +  C N    +EA +  ++++P+   R N +    ++K W      Q +   
Sbjct: 45  DVVAYSAAITACANGGRWQEA-VAILSDMPNVGVRPNVISCNAAIKAWGEAGQWQHALSI 103

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
              +    L P + I YN  + +L    Q +  ++L +EM    IE   +TY++ I    
Sbjct: 104 LRGMSKAGLSP-DAISYNTAISALGVAGQSEQAQELMSEMSRLGIEPTVVTYNSAIAAIA 162

Query: 234 RCN--LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291
           R     + +A+   + M   G+ PD +TY++++    K G+ ++ LS+ +     G   D
Sbjct: 163 RGGGGQWRQAVALVKHMSLAGVTPDSITYNSLIVACGKGGQWKQALSVLKGMKKQGLSCD 222

Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
            I +S      GE+G ++    +L E KSLG+ P+LV Y   + A   A +   A  L  
Sbjct: 223 IIGYSAAISACGEAGQWEYSVGLLAEAKSLGITPDLVAYTAAVTACADANQRDKATFLLK 282

Query: 352 EMVESGLTPDEKTLTALIKIYGK-ARWAKDALELWERMRENKWPMDFILYNTLLNMCAD 409
           EM+ +G+ PD    T+LI   G   +W + A+E+ E M +   P + ++YN L+   A+
Sbjct: 283 EMLSAGIRPDAAAFTSLIAALGHDGQWTQ-AVEILESMPKMGAPRNAMVYNALITSWAN 340



 Score = 98.2 bits (243), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/311 (22%), Positives = 138/311 (44%), Gaps = 3/311 (0%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           WQ++      ++  +   ++ + Y+  + +   G ++Q    + ++M +  +  + I+ +
Sbjct: 26  WQEALVLLREMEEDDEIKLDVVAYSAAITACANGGRWQEAVAILSDMPNVGVRPNVISCN 85

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
             I        +  A+     M K GL PD ++Y+  +     +G+ E+   L       
Sbjct: 86  AAIKAWGEAGQWQHALSILRGMSKAGLSPDAISYNTAISALGVAGQSEQAQELMSEMSRL 145

Query: 287 GWKPDPIAF--SVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344
           G +P  + +  ++     G  G +     +++ M   GV P+ + YN+L+ A GK G+  
Sbjct: 146 GIEPTVVTYNSAIAAIARGGGGQWRQAVALVKHMSLAGVTPDSITYNSLIVACGKGGQWK 205

Query: 345 LARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
            A S+   M + GL+ D    +A I   G+A   + ++ L    +      D + Y   +
Sbjct: 206 QALSVLKGMKKQGLSCDIIGYSAAISACGEAGQWEYSVGLLAEAKSLGITPDLVAYTAAV 265

Query: 405 NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
             CAD    ++A  L ++M LS   +PD  ++T+++   G  G    A+E+ E M ++G 
Sbjct: 266 TACADANQRDKATFLLKEM-LSAGIRPDAAAFTSLIAALGHDGQWTQAVEILESMPKMGA 324

Query: 465 AINVMGCTCLI 475
             N M    LI
Sbjct: 325 PRNAMVYNALI 335



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 121/258 (46%), Gaps = 4/258 (1%)

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY-ERGVASGWKPDPIAFSVLGKMFGESG 306
           M   G+ P   +YS  L   AK G+ +E L L  E       K D +A+S         G
Sbjct: 1   MPGLGIRPSVESYSIGLTACAKGGRWQEALVLLREMEEDDEIKLDVVAYSAAITACANGG 60

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
            +     +L +M ++GV+PN++  N  ++A G+AG+   A S+   M ++GL+PD  +  
Sbjct: 61  RWQEAVAILSDMPNVGVRPNVISCNAAIKAWGEAGQWQHALSILRGMSKAGLSPDAISYN 120

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE--EAERLFEDMK 424
             I   G A  ++ A EL   M         + YN+ +   A  G  +  +A  L + M 
Sbjct: 121 TAISALGVAGQSEQAQELMSEMSRLGIEPTVVTYNSAIAAIARGGGGQWRQAVALVKHMS 180

Query: 425 LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484
           L+    PD+ +Y +++   G GG    A+ + + M + G++ +++G +  I   G+A + 
Sbjct: 181 LAG-VTPDSITYNSLIVACGKGGQWKQALSVLKGMKKQGLSCDIIGYSAAISACGEAGQW 239

Query: 485 DDLVRVFGVSIDRGVKPD 502
           +  V +   +   G+ PD
Sbjct: 240 EYSVGLLAEAKSLGITPD 257



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 78/186 (41%), Gaps = 5/186 (2%)

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           Y+  L  CA  G  +EA  L  +M+  D  K D  +Y+A +    +GG    A+ +  +M
Sbjct: 13  YSIGLTACAKGGRWQEALVLLREMEEDDEIKLDVVAYSAAITACANGGRWQEAVAILSDM 72

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETS 519
             +GV  NV+ C   I+  G+A +    + +       G+ PD       +S + +   S
Sbjct: 73  PNVGVRPNVISCNAAIKAWGEAGQWQHALSILRGMSKAGLSPDAISYNTAISALGVAGQS 132

Query: 520 EDVGKVITCLQQAN--PKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFC---N 574
           E   ++++ + +    P +V + + I   + G      +   ++K   +    P     N
Sbjct: 133 EQAQELMSEMSRLGIEPTVVTYNSAIAAIARGGGGQWRQAVALVKHMSLAGVTPDSITYN 192

Query: 575 CLIDIC 580
            LI  C
Sbjct: 193 SLIVAC 198


>gi|357130059|ref|XP_003566674.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 833

 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 153/331 (46%), Gaps = 2/331 (0%)

Query: 181 NLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDE 240
           N F    + YN  +       Q++    +  EM S  +  + +T ++ ++   +     E
Sbjct: 291 NGFQPNKVTYNCMIHGYSISGQWKETAGMFREMTSQGLMPNIVTCNSYMSSLCKHGKSKE 350

Query: 241 AIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGK 300
           A E+F+ M   G  P+ VTYS +L  YA  G   ++L+L+     +G   D   F+++  
Sbjct: 351 AAEFFDSMAAKGHKPNLVTYSVLLHGYATEGCFVDMLNLFNSMEGNGIVADQRVFNIVID 410

Query: 301 MFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTP 360
            +G+ G  D    +  +M+  GV P+   Y  ++ A  + G+   A   F++M+  GL P
Sbjct: 411 AYGKRGMMDETMLIFTQMQEQGVIPDACTYGIVIAAFSRMGRLADAMDKFNQMIAMGLKP 470

Query: 361 DEKTLTALIKIYGKARWAKDALELWERMRENKWPM-DFILYNTLLNMCADIGLVEEAERL 419
           +     +LI+ +        A EL   M     P  + + +N+++N     G V EA  +
Sbjct: 471 EGIVYHSLIQGFCMHGNLVKAKELVSEMMSRGIPRPNIVFFNSIINSLCKEGRVVEAHDI 530

Query: 420 FEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479
           F D  +    +PD  ++ ++++ YG  G ++ A  + + M   G+  +V+    LI    
Sbjct: 531 F-DFVIHIGERPDVITFNSLIDGYGLVGKIEKAFGVLDAMISAGIEPDVVSYNTLIDGYC 589

Query: 480 KARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
           +  RIDD + +FG  + +GVKP     G +L
Sbjct: 590 RNGRIDDGLILFGEMLSKGVKPTTITYGIIL 620



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 95/398 (23%), Positives = 173/398 (43%), Gaps = 39/398 (9%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMV--SNEIELDNITYSTIITCAKRCNLFDEAIE 243
           +TI YN  +K+L    + Q    L + MV  S     + +TY+T+I    R     +A  
Sbjct: 189 DTISYNTVVKTLCEDSRSQRALDLLHTMVKKSGGCSPNVVTYNTVIHGLFREGEVSKACN 248

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
            F  M + G++PD VTY++I+D   K+  +++   +  + +++G++P+ + ++ +   + 
Sbjct: 249 LFHEMMQQGVVPDVVTYTSIIDALCKARAMDKAELVLRQMISNGFQPNKVTYNCMIHGYS 308

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
            SG +     + +EM S G+ PN+V  N+ + ++ K GK   A   FD M   G  P+  
Sbjct: 309 ISGQWKETAGMFREMTSQGLMPNIVTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPNLV 368

Query: 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
           T + L+  Y       D L L+  M  N    D  ++N +++     G+++E   +F  M
Sbjct: 369 TYSVLLHGYATEGCFVDMLNLFNSMEGNGIVADQRVFNIVIDAYGKRGMMDETMLIFTQM 428

Query: 424 K----LSDYC------------------------------KPDNYSYTAMLNIYGSGGNV 449
           +    + D C                              KP+   Y +++  +   GN+
Sbjct: 429 QEQGVIPDACTYGIVIAAFSRMGRLADAMDKFNQMIAMGLKPEGIVYHSLIQGFCMHGNL 488

Query: 450 DNAIELFEEMSELGVA-INVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGC 508
             A EL  EM   G+   N++    +I  L K  R+ +   +F   I  G +PD      
Sbjct: 489 VKAKELVSEMMSRGIPRPNIVFFNSIINSLCKEGRVVEAHDIFDFVIHIGERPDVITFNS 548

Query: 509 LLSVVSLCETSEDVGKVITCLQQAN--PKLVAFLNLIE 544
           L+    L    E    V+  +  A   P +V++  LI+
Sbjct: 549 LIDGYGLVGKIEKAFGVLDAMISAGIEPDVVSYNTLID 586



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 142/293 (48%), Gaps = 3/293 (1%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITY-STIITCA 232
           FN + +  L P E I Y+  ++           ++L +EM+S  I   NI + ++II   
Sbjct: 460 FNQMIAMGLKP-EGIVYHSLIQGFCMHGNLVKAKELVSEMMSRGIPRPNIVFFNSIINSL 518

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +     EA + F+ +   G  PD +T+++++D Y   GK+E+   + +  +++G +PD 
Sbjct: 519 CKEGRVVEAHDIFDFVIHIGERPDVITFNSLIDGYGLVGKIEKAFGVLDAMISAGIEPDV 578

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           ++++ L   +  +G  D    +  EM S GV+P  + Y  +L  +   G+   A+ +  E
Sbjct: 579 VSYNTLIDGYCRNGRIDDGLILFGEMLSKGVKPTTITYGIILHGLFNDGRTVGAKKMCHE 638

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M+ESG T D  T   ++    +     +A+ +++++       +  + NT+++    +  
Sbjct: 639 MIESGTTMDISTCGIILGGLCRNNCDDEAIAMFKKLGAMNVKFNIAIINTMIDAMYKVRK 698

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
            EEA+ LF+ +  +    P+  +Y  M+      G+V+ A  +F  M + G A
Sbjct: 699 REEAKELFDSISATGLV-PNASTYGVMIKNLLKEGSVEEADNMFSLMEKSGCA 750



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 142/328 (43%), Gaps = 37/328 (11%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS-LYER 282
           TY+ ++ C  R          F R  KTGL  D +  S +L     + + ++V++ L  R
Sbjct: 121 TYNILMDCCCRTRRPTVGFALFGRFLKTGLKMDVIVASILLKCLYHAKRSDDVVNLLLHR 180

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEM--KSLGVQPNLVVYNTLLEAMGKA 340
               G +PD I+++ + K   E         +L  M  KS G  PN+V YNT++  + + 
Sbjct: 181 MPELGVEPDTISYNTVVKTLCEDSRSQRALDLLHTMVKKSGGCSPNVVTYNTVIHGLFRE 240

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G+   A +LF EM++ G+ PD  T T++I    KAR    A  +  +M  N +  + + Y
Sbjct: 241 GEVSKACNLFHEMMQQGVVPDVVTYTSIIDALCKARAMDKAELVLRQMISNGFQPNKVTY 300

Query: 401 NTLLNMCADIGLVEEAERLFEDMK--------------LSDYC----------------- 429
           N +++  +  G  +E   +F +M               +S  C                 
Sbjct: 301 NCMIHGYSISGQWKETAGMFREMTSQGLMPNIVTCNSYMSSLCKHGKSKEAAEFFDSMAA 360

Query: 430 ---KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
              KP+  +Y+ +L+ Y + G   + + LF  M   G+  +      +I   GK   +D+
Sbjct: 361 KGHKPNLVTYSVLLHGYATEGCFVDMLNLFNSMEGNGIVADQRVFNIVIDAYGKRGMMDE 420

Query: 487 LVRVFGVSIDRGVKPDDRLCGCLLSVVS 514
            + +F    ++GV PD    G +++  S
Sbjct: 421 TMLIFTQMQEQGVIPDACTYGIVIAAFS 448



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 89/193 (46%), Gaps = 2/193 (1%)

Query: 325 PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384
           P +  YN L++   +  +P +  +LF   +++GL  D    + L+K    A+ + D + L
Sbjct: 117 PTVCTYNILMDCCCRTRRPTVGFALFGRFLKTGLKMDVIVASILLKCLYHAKRSDDVVNL 176

Query: 385 W-ERMRENKWPMDFILYNTLL-NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNI 442
              RM E     D I YNT++  +C D       + L   +K S  C P+  +Y  +++ 
Sbjct: 177 LLHRMPELGVEPDTISYNTVVKTLCEDSRSQRALDLLHTMVKKSGGCSPNVVTYNTVIHG 236

Query: 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
               G V  A  LF EM + GV  +V+  T +I  L KAR +D    V    I  G +P+
Sbjct: 237 LFREGEVSKACNLFHEMMQQGVVPDVVTYTSIIDALCKARAMDKAELVLRQMISNGFQPN 296

Query: 503 DRLCGCLLSVVSL 515
                C++   S+
Sbjct: 297 KVTYNCMIHGYSI 309



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/274 (21%), Positives = 123/274 (44%), Gaps = 44/274 (16%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIEL----DNITYSTIITCAKRCNLFDEAIE 243
           +F+N  + SL   ++ +++E  A+++    I +    D IT++++I         ++A  
Sbjct: 509 VFFNSIINSL--CKEGRVVE--AHDIFDFVIHIGERPDVITFNSLIDGYGLVGKIEKAFG 564

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
             + M   G+ PD V+Y+ ++D Y ++G++++ L L+   ++ G KP  I + ++     
Sbjct: 565 VLDAMISAGIEPDVVSYNTLIDGYCRNGRIDDGLILFGEMLSKGVKPTTITYGIILHGLF 624

Query: 304 ESGDYDGIRYVLQEM--------------------------------KSLG---VQPNLV 328
             G   G + +  EM                                K LG   V+ N+ 
Sbjct: 625 NDGRTVGAKKMCHEMIESGTTMDISTCGIILGGLCRNNCDDEAIAMFKKLGAMNVKFNIA 684

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
           + NT+++AM K  K   A+ LFD +  +GL P+  T   +IK   K    ++A  ++  M
Sbjct: 685 IINTMIDAMYKVRKREEAKELFDSISATGLVPNASTYGVMIKNLLKEGSVEEADNMFSLM 744

Query: 389 RENKWPMDFILYNTLLNMCADIG-LVEEAERLFE 421
            ++       L N ++ +  + G +V+    +F+
Sbjct: 745 EKSGCAPSSRLLNYIIRVLLEKGEIVKAGNYMFK 778



 Score = 42.0 bits (97), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 36/171 (21%), Positives = 75/171 (43%), Gaps = 1/171 (0%)

Query: 172 FFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITC 231
             F  + S+ + P  TI Y + +  L    +    +++ +EM+ +   +D  T   I+  
Sbjct: 599 ILFGEMLSKGVKP-TTITYGIILHGLFNDGRTVGAKKMCHEMIESGTTMDISTCGIILGG 657

Query: 232 AKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291
             R N  DEAI  F+++    +  +    + ++D   K  K EE   L++   A+G  P+
Sbjct: 658 LCRNNCDDEAIAMFKKLGAMNVKFNIAIINTMIDAMYKVRKREEAKELFDSISATGLVPN 717

Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
              + V+ K   + G  +    +   M+  G  P+  + N ++  + + G+
Sbjct: 718 ASTYGVMIKNLLKEGSVEEADNMFSLMEKSGCAPSSRLLNYIIRVLLEKGE 768


>gi|15225055|ref|NP_181456.1| lateral organ junction protein [Arabidopsis thaliana]
 gi|75100007|sp|O80958.1|PP194_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g39230, mitochondrial; AltName: Full=Protein LATERAL
           ORGAN JUNCTION; Flags: Precursor
 gi|3402682|gb|AAC28985.1| unknown protein [Arabidopsis thaliana]
 gi|330254554|gb|AEC09648.1| lateral organ junction protein [Arabidopsis thaliana]
          Length = 867

 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/312 (24%), Positives = 151/312 (48%), Gaps = 34/312 (10%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           ++ +EMV   I +  I  ++++    + N   +A++ F RM + GL PD+V +S +++ +
Sbjct: 331 RVMDEMVGFGIPMSVIAATSLVNGYCKGNELGKALDLFNRMEEEGLAPDKVMFSVMVEWF 390

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGK--------------------------- 300
            K+ ++E+ +  Y R  +    P  +    + +                           
Sbjct: 391 CKNMEMEKAIEFYMRMKSVRIAPSSVLVHTMIQGCLKAESPEAALEIFNDSFESWIAHGF 450

Query: 301 -------MFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
                  +F + G  D     L+ M+  G++PN+V YN ++ A  +     LARS+F EM
Sbjct: 451 MCNKIFLLFCKQGKVDAATSFLKMMEQKGIEPNVVFYNNMMLAHCRMKNMDLARSIFSEM 510

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
           +E GL P+  T + LI  + K +  ++A ++  +M  + +  + ++YNT++N    +G  
Sbjct: 511 LEKGLEPNNFTYSILIDGFFKNKDEQNAWDVINQMNASNFEANEVIYNTIINGLCKVGQT 570

Query: 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTC 473
            +A+ + +++           SY ++++ +   G+ D+A+E + EMSE G + NV+  T 
Sbjct: 571 SKAKEMLQNLIKEKRYSMSCTSYNSIIDGFVKVGDTDSAVETYREMSENGKSPNVVTFTS 630

Query: 474 LIQCLGKARRID 485
           LI    K+ R+D
Sbjct: 631 LINGFCKSNRMD 642



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 139/299 (46%), Gaps = 3/299 (1%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYS 226
           Q ++   N + + N F    + YN  +  L + G+  +  E L N +      +   +Y+
Sbjct: 536 QNAWDVINQMNASN-FEANEVIYNTIINGLCKVGQTSKAKEMLQNLIKEKRYSMSCTSYN 594

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           +II    +    D A+E +  M + G  P+ VT++++++ + KS +++  L +     + 
Sbjct: 595 SIIDGFVKVGDTDSAVETYREMSENGKSPNVVTFTSLINGFCKSNRMDLALEMTHEMKSM 654

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
             K D  A+  L   F +  D      +  E+  LG+ PN+ VYN+L+      GK   A
Sbjct: 655 ELKLDLPAYGALIDGFCKKNDMKTAYTLFSELPELGLMPNVSVYNSLISGFRNLGKMDAA 714

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
             L+ +MV  G++ D  T T +I    K      A +L+  + +     D IL+  L+N 
Sbjct: 715 IDLYKKMVNDGISCDLFTYTTMIDGLLKDGNINLASDLYSELLDLGIVPDEILHMVLVNG 774

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
            +  G   +A ++ E+MK  D   P+   Y+ ++  +   GN++ A  L +EM E G+ 
Sbjct: 775 LSKKGQFLKASKMLEEMKKKD-VTPNVLLYSTVIAGHHREGNLNEAFRLHDEMLEKGIV 832



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/302 (23%), Positives = 136/302 (45%), Gaps = 2/302 (0%)

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVT-YSAILDVYAK 269
           N+M ++  E + + Y+TII    +     +A E  + + K        T Y++I+D + K
Sbjct: 543 NQMNASNFEANEVIYNTIINGLCKVGQTSKAKEMLQNLIKEKRYSMSCTSYNSIIDGFVK 602

Query: 270 SGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVV 329
            G  +  +  Y     +G  P+ + F+ L   F +S   D    +  EMKS+ ++ +L  
Sbjct: 603 VGDTDSAVETYREMSENGKSPNVVTFTSLINGFCKSNRMDLALEMTHEMKSMELKLDLPA 662

Query: 330 YNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMR 389
           Y  L++   K      A +LF E+ E GL P+     +LI  +        A++L+++M 
Sbjct: 663 YGALIDGFCKKNDMKTAYTLFSELPELGLMPNVSVYNSLISGFRNLGKMDAAIDLYKKMV 722

Query: 390 ENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNV 449
            +    D   Y T+++     G +  A  L+ ++ L     PD   +  ++N     G  
Sbjct: 723 NDGISCDLFTYTTMIDGLLKDGNINLASDLYSEL-LDLGIVPDEILHMVLVNGLSKKGQF 781

Query: 450 DNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCL 509
             A ++ EEM +  V  NV+  + +I    +   +++  R+    +++G+  DD +   L
Sbjct: 782 LKASKMLEEMKKKDVTPNVLLYSTVIAGHHREGNLNEAFRLHDEMLEKGIVHDDTVFNLL 841

Query: 510 LS 511
           +S
Sbjct: 842 VS 843



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/314 (21%), Positives = 134/314 (42%), Gaps = 38/314 (12%)

Query: 226 STIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVA 285
           + +++   R NL DEA E + +M   G+  D VT   ++    +  K EE + ++ R ++
Sbjct: 208 NNVLSSLVRSNLIDEAKEIYNKMVLIGVAGDNVTTQLLMRASLRERKPEEAVKIFRRVMS 267

Query: 286 SGWKPDPIAFSVL---------------------GKM---------------FGESGDYD 309
            G +PD + FS+                      GK+               F + G+ +
Sbjct: 268 RGAEPDGLLFSLAVQAACKTPDLVMALDLLREMRGKLGVPASQETYTSVIVAFVKEGNME 327

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               V+ EM   G+  +++   +L+    K  + G A  LF+ M E GL PD+   + ++
Sbjct: 328 EAVRVMDEMVGFGIPMSVIAATSLVNGYCKGNELGKALDLFNRMEEEGLAPDKVMFSVMV 387

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
           + + K    + A+E + RM+  +     +L +T++  C      E A  +F D   S   
Sbjct: 388 EWFCKNMEMEKAIEFYMRMKSVRIAPSSVLVHTMIQGCLKAESPEAALEIFNDSFESWIA 447

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
               +    +  ++   G VD A    + M + G+  NV+    ++    + + +D    
Sbjct: 448 H--GFMCNKIFLLFCKQGKVDAATSFLKMMEQKGIEPNVVFYNNMMLAHCRMKNMDLARS 505

Query: 490 VFGVSIDRGVKPDD 503
           +F   +++G++P++
Sbjct: 506 IFSEMLEKGLEPNN 519



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 50/218 (22%), Positives = 102/218 (46%), Gaps = 4/218 (1%)

Query: 192 VTMKSLRFG----RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           VT  SL  G     +  L  ++ +EM S E++LD   Y  +I    + N    A   F  
Sbjct: 626 VTFTSLINGFCKSNRMDLALEMTHEMKSMELKLDLPAYGALIDGFCKKNDMKTAYTLFSE 685

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           + + GLMP+   Y++++  +   GK++  + LY++ V  G   D   ++ +     + G+
Sbjct: 686 LPELGLMPNVSVYNSLISGFRNLGKMDAAIDLYKKMVNDGISCDLFTYTTMIDGLLKDGN 745

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
            +    +  E+  LG+ P+ +++  L+  + K G+   A  + +EM +  +TP+    + 
Sbjct: 746 INLASDLYSELLDLGIVPDEILHMVLVNGLSKKGQFLKASKMLEEMKKKDVTPNVLLYST 805

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405
           +I  + +     +A  L + M E     D  ++N L++
Sbjct: 806 VIAGHHREGNLNEAFRLHDEMLEKGIVHDDTVFNLLVS 843



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/258 (19%), Positives = 118/258 (45%), Gaps = 2/258 (0%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           TY+++I    +    +EA+   + M   G+    +  +++++ Y K  ++ + L L+ R 
Sbjct: 312 TYTSVIVAFVKEGNMEEAVRVMDEMVGFGIPMSVIAATSLVNGYCKGNELGKALDLFNRM 371

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
              G  PD + FSV+ + F ++ + +        MKS+ + P+ V+ +T+++   KA  P
Sbjct: 372 EEEGLAPDKVMFSVMVEWFCKNMEMEKAIEFYMRMKSVRIAPSSVLVHTMIQGCLKAESP 431

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
             A  +F++  ES +         +  ++ K      A    + M +     + + YN +
Sbjct: 432 EAALEIFNDSFESWIA-HGFMCNKIFLLFCKQGKVDAATSFLKMMEQKGIEPNVVFYNNM 490

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           +     +  ++ A  +F +M L    +P+N++Y+ +++ +    +  NA ++  +M+   
Sbjct: 491 MLAHCRMKNMDLARSIFSEM-LEKGLEPNNFTYSILIDGFFKNKDEQNAWDVINQMNASN 549

Query: 464 VAINVMGCTCLIQCLGKA 481
              N +    +I  L K 
Sbjct: 550 FEANEVIYNTIINGLCKV 567



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/202 (22%), Positives = 84/202 (41%), Gaps = 36/202 (17%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           + +Y  F+ +    L P  ++ YN  +   R   +      L  +MV++ I  D  TY+T
Sbjct: 677 KTAYTLFSELPELGLMPNVSV-YNSLISGFRNLGKMDAAIDLYKKMVNDGISCDLFTYTT 735

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           +I    +    + A + +  +   G++PDE+ +  +++  +K G+               
Sbjct: 736 MIDGLLKDGNINLASDLYSELLDLGIVPDEILHMVLVNGLSKKGQ--------------- 780

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
                  F    KM             L+EMK   V PN+++Y+T++    + G    A 
Sbjct: 781 -------FLKASKM-------------LEEMKKKDVTPNVLLYSTVIAGHHREGNLNEAF 820

Query: 348 SLFDEMVESGLTPDEKTLTALI 369
            L DEM+E G+  D+     L+
Sbjct: 821 RLHDEMLEKGIVHDDTVFNLLV 842


>gi|357120648|ref|XP_003562037.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g23020-like [Brachypodium distachyon]
          Length = 807

 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 137/309 (44%), Gaps = 29/309 (9%)

Query: 159 LILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEI 218
           +IL   K W+++   F+W + +    +  I YNV +  +    ++ L+  L ++M S  +
Sbjct: 113 IILKEQKDWRRAVEIFDWFRRERCHELNVIHYNVVLCVVGRATRWDLVVGLWHQMHSCGV 172

Query: 219 ELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS 278
             +N TY T+I    +      A+ W   M K GL+PDEVT S +L  Y K+G+ E+   
Sbjct: 173 VPENATYGTLIDVYCKGGRERAALLWLGDMCKRGLVPDEVTMSTVLQAYKKAGEYEKAEL 232

Query: 279 LYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMG 338
            + R  +   K                   +G R             NL  YNTL++  G
Sbjct: 233 FFRRWSSESHKRK-----------------EGHRCY-----------NLYTYNTLIDTYG 264

Query: 339 KAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFI 398
           KAG+       F +M+  G+ PD  T   LI ++GK    +    L   M E +   D  
Sbjct: 265 KAGQLEKVSDAFSQMLREGVVPDIFTFNTLIHVWGKHHRMEQVSSLVRMMEEFQCLPDTR 324

Query: 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458
            YN L+++  +I  ++ AE  F  MK  +   PD  S   +L  Y + G V  A  L +E
Sbjct: 325 TYNILISLYREIDEIDVAEFYFCKMKAENLV-PDTVSCRTLLYGYSTRGMVTKAEALIKE 383

Query: 459 MSELGVAIN 467
           M E G+ I+
Sbjct: 384 MDESGLVID 392



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 135/283 (47%), Gaps = 12/283 (4%)

Query: 231 CAKRCNL----------FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           C   CN+           DEA E  + M + G++PD +TYS+++ + + +   E+ L   
Sbjct: 458 CVSVCNVMIKAYGLVEKLDEACEVADCMERYGVLPDYLTYSSLIQLLSTAKLPEKALYYL 517

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
            +  A+    D + +SV+   F +  +   +  + +EM + G+  +  VY+ L++A  + 
Sbjct: 518 RKMHAAELPIDCVPYSVIISSFAKKDNLHMVECLFREMATSGICADAYVYSILIDAYAEV 577

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G    A + F  + ++GL        +LIK+Y KA +  +A E ++ ++      +    
Sbjct: 578 GNVHQAAAYFGLVTKAGLCESSTIYNSLIKLYTKAGYLAEAHETYKLLKSLDTDTNLYAS 637

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           N ++++ +D  +V EA  +FE +K S  C  + +S+  M+ +Y      D A  + +EM 
Sbjct: 638 NCMISLYSDHCMVNEAREIFESLKASG-C-ANEFSHAMMVCLYKKVARYDEAHRISKEMQ 695

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
            LG+   V+    +IQ      + ++ V++F   +     P+D
Sbjct: 696 ALGLLTQVLSYNSVIQMYISCGKTEEAVKIFQNMLASSTPPND 738



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/256 (21%), Positives = 111/256 (43%), Gaps = 37/256 (14%)

Query: 148 IPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIE 207
           +P   T  + + +L++ K  +K+ ++   + +  L P++ + Y+V + S        ++E
Sbjct: 491 LPDYLTYSSLIQLLSTAKLPEKALYYLRKMHAAEL-PIDCVPYSVIISSFAKKDNLHMVE 549

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
            L  EM ++ I  D   YS +I          +A  +F  + K GL      Y++++ +Y
Sbjct: 550 CLFREMATSGICADAYVYSILIDAYAEVGNVHQAAAYFGLVTKAGLCESSTIYNSLIKLY 609

Query: 268 AKSGKVEE----------------------VLSLY-------------ERGVASGWKPDP 292
            K+G + E                      ++SLY             E   ASG   + 
Sbjct: 610 TKAGYLAEAHETYKLLKSLDTDTNLYASNCMISLYSDHCMVNEAREIFESLKASGC-ANE 668

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
            + +++  ++ +   YD    + +EM++LG+   ++ YN++++     GK   A  +F  
Sbjct: 669 FSHAMMVCLYKKVARYDEAHRISKEMQALGLLTQVLSYNSVIQMYISCGKTEEAVKIFQN 728

Query: 353 MVESGLTPDEKTLTAL 368
           M+ S   P++ T  AL
Sbjct: 729 MLASSTPPNDATFKAL 744



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 75/374 (20%), Positives = 144/374 (38%), Gaps = 39/374 (10%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D  TY+ +I+  +  +  D A  +F +M    L+PD V+   +L  Y+  G V +  +L 
Sbjct: 322 DTRTYNILISLYREIDEIDVAEFYFCKMKAENLVPDTVSCRTLLYGYSTRGMVTKAEALI 381

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYD-GIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
           +    SG   D    S L +M+  +G  +   R+  +    +G +     ++  ++A G+
Sbjct: 382 KEMDESGLVIDEYTQSALTRMYVNTGMLERSWRWFERFCHQMGSE----CFSANIDAFGE 437

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
            G   LA   F   +E  +         +IK YG      +A E+ + M       D++ 
Sbjct: 438 KGCIILAEKAFMCCLERKMLC-VSVCNVMIKAYGLVEKLDEACEVADCMERYGVLPDYLT 496

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           Y++L+ + +   L E+A      M  ++    D   Y+ +++ +    N+     LF EM
Sbjct: 497 YSSLIQLLSTAKLPEKALYYLRKMHAAEL-PIDCVPYSVIISSFAKKDNLHMVECLFREM 555

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETS 519
           +  G+  +    + LI    +   +      FG                L++   LCE+S
Sbjct: 556 ATSGICADAYVYSILIDAYAEVGNVHQAAAYFG----------------LVTKAGLCESS 599

Query: 520 EDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDI 579
                +I    +A                G+     E   ++K  + D      NC+I +
Sbjct: 600 TIYNSLIKLYTKA----------------GYLAEAHETYKLLKSLDTDTNLYASNCMISL 643

Query: 580 CRNRNLNERAHELL 593
             +  +   A E+ 
Sbjct: 644 YSDHCMVNEAREIF 657


>gi|4836917|gb|AAD30619.1|AC007153_11 similar to indole-3-acetate beta-glucosyltransferase [Arabidopsis
            thaliana]
          Length = 1184

 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/313 (24%), Positives = 149/313 (47%), Gaps = 2/313 (0%)

Query: 174  FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
            F+ +  Q + P +T+ Y   +         +   +   EM S +I  D +TY+ II+   
Sbjct: 782  FSEMIRQGILP-DTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFC 840

Query: 234  RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
            +     EA + F  M+  GL PD VT++ +++ Y K+G +++   ++   + +G  P+ +
Sbjct: 841  QIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVV 900

Query: 294  AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
             ++ L     + GD D    +L EM  +G+QPN+  YN+++  + K+G    A  L  E 
Sbjct: 901  TYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEF 960

Query: 354  VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
              +GL  D  T T L+  Y K+     A E+ + M         + +N L+N     G++
Sbjct: 961  EAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGML 1020

Query: 414  EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTC 473
            E+ E+L   M L+    P+  ++ +++  Y    N+  A  ++++M   GV  +      
Sbjct: 1021 EDGEKLLNWM-LAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYEN 1079

Query: 474  LIQCLGKARRIDD 486
            L++   KAR + +
Sbjct: 1080 LVKGHCKARNMKE 1092



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 89/381 (23%), Positives = 164/381 (43%), Gaps = 25/381 (6%)

Query: 221  DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
            D I+YST++    R    D+  +  E M + GL P+   Y +I+ +  +  K+ E    +
Sbjct: 723  DVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAF 782

Query: 281  ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
               +  G  PD + ++ L   F + GD         EM S  + P+++ Y  ++    + 
Sbjct: 783  SEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQI 842

Query: 341  GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
            G    A  LF EM   GL PD  T T LI  Y KA   KDA  +   M +     + + Y
Sbjct: 843  GDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTY 902

Query: 401  NTLLNMCADIGLVEEAERLFEDM-KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
             TL++     G ++ A  L  +M K+    +P+ ++Y +++N     GN++ A++L  E 
Sbjct: 903  TTLIDGLCKEGDLDSANELLHEMWKIG--LQPNIFTYNSIVNGLCKSGNIEEAVKLVGEF 960

Query: 460  SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETS 519
               G+  + +  T L+    K+  +D    +    + +G++P       L++   L    
Sbjct: 961  EAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGML 1020

Query: 520  EDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEF--RNVIKDTEVDAR-------- 569
            ED  K++  +             I  N+T F ++ +++  RN +K      +        
Sbjct: 1021 EDGEKLLNWMLAKG---------IAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVG 1071

Query: 570  ---RPFCNCLIDICRNRNLNE 587
               + + N +   C+ RN+ E
Sbjct: 1072 PDGKTYENLVKGHCKARNMKE 1092



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/305 (23%), Positives = 137/305 (44%), Gaps = 2/305 (0%)

Query: 198  RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDE 257
            RFG +   + +L   M    ++ ++  Y +II    R     EA E F  M + G++PD 
Sbjct: 736  RFG-ELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDT 794

Query: 258  VTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQE 317
            V Y+ ++D + K G +      +    +    PD + ++ +   F + GD      +  E
Sbjct: 795  VVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHE 854

Query: 318  MKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARW 377
            M   G++P+ V +  L+    KAG    A  + + M+++G +P+  T T LI    K   
Sbjct: 855  MFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGD 914

Query: 378  AKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYT 437
               A EL   M +     +   YN+++N     G +EEA +L  + + +     D  +YT
Sbjct: 915  LDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAG-LNADTVTYT 973

Query: 438  AMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDR 497
             +++ Y   G +D A E+ +EM   G+   ++    L+        ++D  ++    + +
Sbjct: 974  TLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAK 1033

Query: 498  GVKPD 502
            G+ P+
Sbjct: 1034 GIAPN 1038



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/318 (22%), Positives = 146/318 (45%), Gaps = 13/318 (4%)

Query: 171 YFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIIT 230
           Y + +W     +F    +F+ V +         ++ E++ N  +   ++  N+  + +  
Sbjct: 609 YTYKDWGSDPRVF---DVFFQVLVDFGLLREARRVFEKMLNYGLVLSVDSCNVYLTRL-- 663

Query: 231 CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
            +K C     AI  F    + G+  +  +Y+ ++    + G+++E   L       G+ P
Sbjct: 664 -SKDCYKTATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTP 722

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
           D I++S +   +   G+ D +  +++ MK  G++PN  +Y +++  + +  K   A   F
Sbjct: 723 DVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAF 782

Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
            EM+  G+ PD    T LI  + K    + A + +  M       D + Y  +++    I
Sbjct: 783 SEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQI 842

Query: 411 GLVEEAERLFEDMKLSDYCK---PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
           G + EA +LF +M    +CK   PD+ ++T ++N Y   G++ +A  +   M + G + N
Sbjct: 843 GDMVEAGKLFHEM----FCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPN 898

Query: 468 VMGCTCLIQCLGKARRID 485
           V+  T LI  L K   +D
Sbjct: 899 VVTYTTLIDGLCKEGDLD 916



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 133/298 (44%), Gaps = 42/298 (14%)

Query: 208  QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
            ++ N M+      + +TY+T+I    +    D A E    M+K GL P+  TY++I++  
Sbjct: 885  RVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGL 944

Query: 268  AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
             KSG +EE + L     A+G   D + ++ L   + +SG+ D  + +L+EM   G+QP +
Sbjct: 945  CKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTI 1004

Query: 328  VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
            V +N L+      G       L + M+  G+ P+  T  +L+K Y               
Sbjct: 1005 VTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYC-------------- 1050

Query: 388  MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
            +R N                     ++ A  +++DM  S    PD  +Y  ++  +    
Sbjct: 1051 IRNN---------------------LKAATAIYKDM-CSRGVGPDGKTYENLVKGHCKAR 1088

Query: 448  NVDNAIELFEEMSELGVAINVMGCTCLIQCLGK------ARRIDDLVRVFGVSIDRGV 499
            N+  A  LF+EM   G +++V   + LI+   K      AR + D +R  G++ D+ +
Sbjct: 1089 NMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEI 1146



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/180 (18%), Positives = 81/180 (45%)

Query: 186  ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
            +T+ Y   M +     +    +++  EM+   ++   +T++ ++       + ++  +  
Sbjct: 968  DTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLL 1027

Query: 246  ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
              M   G+ P+  T+++++  Y     ++   ++Y+   + G  PD   +  L K   ++
Sbjct: 1028 NWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKA 1087

Query: 306  GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
             +     ++ QEMK  G   ++  Y+ L++   K  K   AR +FD+M   GL  D++  
Sbjct: 1088 RNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIF 1147



 Score = 47.4 bits (111), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 36/175 (20%), Positives = 77/175 (44%)

Query: 188  IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
            + +NV M         +  E+L N M++  I  +  T+++++      N    A   ++ 
Sbjct: 1005 VTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKD 1064

Query: 248  MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
            M   G+ PD  TY  ++  + K+  ++E   L++     G+      +SVL K F +   
Sbjct: 1065 MCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKK 1124

Query: 308  YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
            +   R V  +M+  G+  +  +++   +   K  +P       DE++E+ L  ++
Sbjct: 1125 FLEAREVFDQMRREGLAADKEIFDFFSDTKYKGKRPDTIVDPIDEIIENYLVDEQ 1179


>gi|227463004|gb|ACP39954.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227463006|gb|ACP39955.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 547

 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 91/368 (24%), Positives = 164/368 (44%), Gaps = 36/368 (9%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           FF W + Q  F   T  YN  +++L   +QF+LI  L NEM S ++ L+  T++ I    
Sbjct: 143 FFTWAEKQKGFKYNTESYNALIEALGKIKQFKLIRSLVNEMKSRKL-LNKDTFALISRRH 201

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            R    +EAIE FERM + G   +   ++ +LD   KS  VE+   ++++     + PD 
Sbjct: 202 ARARKVEEAIEAFERMEEFGFKLETSDFNRLLDTLCKSRHVEKANKVFDKMKKRRFVPDI 261

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
            ++++L + +G+  +   +  V  EMK  G +P++V Y  L+ A  KA K   A  LF E
Sbjct: 262 KSYTILLEGWGKEHNLLRLDEVYLEMKYDGFEPDVVTYGILISAYCKAKKYDAAIELFHE 321

Query: 353 M-----------------------------------VESGLTPDEKTLTALIKIYGKARW 377
           M                                      G TP+  T  +L+  Y  +  
Sbjct: 322 MEAKNCKPTPHVYCTLINGLGSEKRLSEALEFFERFKSCGFTPEAPTYNSLVGAYCWSMR 381

Query: 378 AKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYT 437
             DA ++ + MR++    +   Y+ +L+         EA   F+ M     C+P   +Y 
Sbjct: 382 IDDAFQVIDEMRKHSAGPNSRTYDIILHHLIKARRTNEAYFRFQKMSNEPGCEPTVSTYE 441

Query: 438 AMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDR 497
            ++ ++ +   VD A +++++M   GV   +   + LI  L    ++ +  + F   +D 
Sbjct: 442 IIVRMFCNEDRVDLAKQVWDQMKAKGVLPGMHMYSDLITSLCHKNKLGEACKYFQEMLDA 501

Query: 498 GVKPDDRL 505
           G++P  ++
Sbjct: 502 GIRPPAKM 509



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/243 (19%), Positives = 95/243 (39%), Gaps = 50/243 (20%)

Query: 176 WIKSQNLFPMETIF--------------YNVTMKSLRFGRQFQLIEQLANEMVSNEIELD 221
           W K  NL  ++ ++              Y + + +    +++    +L +EM +   +  
Sbjct: 271 WGKEHNLLRLDEVYLEMKYDGFEPDVVTYGILISAYCKAKKYDAAIELFHEMEAKNCKPT 330

Query: 222 NITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL-- 279
              Y T+I          EA+E+FER    G  P+  TY++++  Y  S ++++   +  
Sbjct: 331 PHVYCTLINGLGSEKRLSEALEFFERFKSCGFTPEAPTYNSLVGAYCWSMRIDDAFQVID 390

Query: 280 ----YERGVAS------------------------------GWKPDPIAFSVLGKMFGES 305
               +  G  S                              G +P    + ++ +MF   
Sbjct: 391 EMRKHSAGPNSRTYDIILHHLIKARRTNEAYFRFQKMSNEPGCEPTVSTYEIIVRMFCNE 450

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
              D  + V  +MK+ GV P + +Y+ L+ ++    K G A   F EM+++G+ P  K  
Sbjct: 451 DRVDLAKQVWDQMKAKGVLPGMHMYSDLITSLCHKNKLGEACKYFQEMLDAGIRPPAKMF 510

Query: 366 TAL 368
           + L
Sbjct: 511 SNL 513


>gi|291622148|emb|CBJ23784.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 97/363 (26%), Positives = 166/363 (45%), Gaps = 45/363 (12%)

Query: 180 QNL-FPMETIFYNVTMKSLRFGRQFQLIEQLA--NEMVSNEIELDNITYSTIITCAKRCN 236
           QNL  P     Y++ +    F R+ QL   LA   +M+    E + +T S+++       
Sbjct: 108 QNLGMPHNHYTYSILINC--FCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSK 165

Query: 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS 296
              EA+   ++M+ TG  P+ VT++ ++       K  E ++L +R VA G +PD + + 
Sbjct: 166 RISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYG 225

Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356
           V+     + GD D    +L +M+   ++P +++Y T+++ + K      A +LF EM   
Sbjct: 226 VVVNGLCKRGDTDLAFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETK 285

Query: 357 GLTPDEKTLTALIKI---YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
           G+ P+  T ++LI     YG  RW+ DA  L   M E K   D   ++ L++     G +
Sbjct: 286 GIRPNVVTYSSLISCLCNYG--RWS-DASRLLSDMIERKINPDVFTFSALIDAFVKEGKL 342

Query: 414 EEAERLFEDM----------------------------------KLSDYCKPDNYSYTAM 439
            EAE+L+++M                                   +S +C PD  SY+ +
Sbjct: 343 VEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTL 402

Query: 440 LNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGV 499
           +  +     VD  +ELF EMS+ G+  N +  T LIQ L +A   D    +F   +  GV
Sbjct: 403 IKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGV 462

Query: 500 KPD 502
            P+
Sbjct: 463 PPN 465



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/259 (29%), Positives = 133/259 (51%), Gaps = 1/259 (0%)

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
           E+L +EMV   I+   +TYS++I      +  DEA + FE M      PD V+YS ++  
Sbjct: 346 EKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTLIKG 405

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
           + K+ +V+E + L+      G   + + ++ L +   ++GD D  + + +EM S GV PN
Sbjct: 406 FCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPN 465

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
           ++ YNTLL+ + K GK   A  +F+ +  S + P   T   +I+   KA   +D  +L+ 
Sbjct: 466 IMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFC 525

Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
            +       D + YNT+++     G  EEA+ LF++MK  D   P++  Y  ++      
Sbjct: 526 NLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMK-EDGTLPNSGCYNTLIRARLRD 584

Query: 447 GNVDNAIELFEEMSELGVA 465
           G+ + + EL +EM   G A
Sbjct: 585 GDREASAELIKEMRSCGFA 603



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 133/264 (50%), Gaps = 2/264 (0%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           +L ++M+  +I  D  T+S +I    +     EA + ++ M K  + P  VTYS++++ +
Sbjct: 312 RLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGF 371

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
               +++E   ++E  V+    PD +++S L K F ++   D    + +EM   G+  N 
Sbjct: 372 CMHDRLDEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNT 431

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
           V Y TL++ + +AG   +A+ +F EMV  G+ P+  T   L+    K    + A+ ++E 
Sbjct: 432 VTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEY 491

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           ++ +K       YN ++      G VE+   LF ++ L    KPD  +Y  M++ +   G
Sbjct: 492 LQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKG-VKPDVVAYNTMISGFCRKG 550

Query: 448 NVDNAIELFEEMSELGVAINVMGC 471
           + + A  LF+EM E G   N  GC
Sbjct: 551 SKEEADALFKEMKEDGTLPNS-GC 573



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 82/306 (26%), Positives = 142/306 (46%), Gaps = 2/306 (0%)

Query: 170 SYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTII 229
           ++   N ++   L P   + Y   +  L   +       L  EM +  I  + +TYS++I
Sbjct: 240 AFILLNKMEQGKLEP-GVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLI 298

Query: 230 TCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWK 289
           +C      + +A      M +  + PD  T+SA++D + K GK+ E   LY+  V     
Sbjct: 299 SCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSID 358

Query: 290 PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSL 349
           P  + +S L   F      D  + + + M S    P++V Y+TL++   KA +      L
Sbjct: 359 PSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMEL 418

Query: 350 FDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCAD 409
           F EM + GL  +  T T LI+   +A     A E+++ M  +  P + + YNTLL+    
Sbjct: 419 FREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCK 478

Query: 410 IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVM 469
            G +E+A  +FE ++ S   +P  Y+Y  M+      G V++  +LF  +S  GV  +V+
Sbjct: 479 NGKLEKAMVVFEYLQRSKM-EPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVV 537

Query: 470 GCTCLI 475
               +I
Sbjct: 538 AYNTMI 543



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 138/294 (46%), Gaps = 1/294 (0%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L N+M   ++E   + Y+TII    +    D+A+  F+ M   G+ P+ VTYS+++    
Sbjct: 243 LLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLC 302

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
             G+  +   L    +     PD   FS L   F + G       +  EM    + P++V
Sbjct: 303 NYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIV 362

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            Y++L+       +   A+ +F+ MV     PD  + + LIK + KA+   + +EL+  M
Sbjct: 363 TYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMELFREM 422

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
            +     + + Y TL+      G  + A+ +F++M +SD   P+  +Y  +L+     G 
Sbjct: 423 SQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEM-VSDGVPPNIMTYNTLLDGLCKNGK 481

Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           ++ A+ +FE +    +   +     +I+ + KA +++D   +F     +GVKPD
Sbjct: 482 LEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPD 535



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 119/265 (44%), Gaps = 1/265 (0%)

Query: 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
            D+A+  F  M K+   P  + +S +L   AK  K + V+SL E+    G   +   +S+
Sbjct: 62  LDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGMPHNHYTYSI 121

Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
           L   F           VL +M  LG +PN+V  ++LL     + +   A +L D+M  +G
Sbjct: 122 LINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTG 181

Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417
             P+  T   LI        A +A+ L +RM       D + Y  ++N     G  + A 
Sbjct: 182 YQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAF 241

Query: 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
            L   M+     +P    YT +++      ++D+A+ LF+EM   G+  NV+  + LI C
Sbjct: 242 ILLNKMEQGKL-EPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISC 300

Query: 478 LGKARRIDDLVRVFGVSIDRGVKPD 502
           L    R  D  R+    I+R + PD
Sbjct: 301 LCNYGRWSDASRLLSDMIERKINPD 325



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 113/236 (47%), Gaps = 1/236 (0%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           F ++ S++ FP + + Y+  +K     ++     +L  EM    +  + +TY+T+I    
Sbjct: 384 FEFMVSKHCFP-DVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLF 442

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
           +    D A E F+ M   G+ P+ +TY+ +LD   K+GK+E+ + ++E    S  +P   
Sbjct: 443 QAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIY 502

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
            ++++ +   ++G  +    +   +   GV+P++V YNT++    + G    A +LF EM
Sbjct: 503 TYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEM 562

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCAD 409
            E G  P+      LI+   +    + + EL + MR   +  D      + NM  D
Sbjct: 563 KEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNMLHD 618



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 96/206 (46%)

Query: 179 SQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLF 238
           SQ      T+ Y   ++ L       + +++  EMVS+ +  + +TY+T++    +    
Sbjct: 423 SQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKL 482

Query: 239 DEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
           ++A+  FE + ++ + P   TY+ +++   K+GKVE+   L+      G KPD +A++ +
Sbjct: 483 EKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTM 542

Query: 299 GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
              F   G  +    + +EMK  G  PN   YNTL+ A  + G    +  L  EM   G 
Sbjct: 543 ISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGF 602

Query: 359 TPDEKTLTALIKIYGKARWAKDALEL 384
             D  T+  +  +    R  K  L++
Sbjct: 603 AGDASTIGLVTNMLHDGRLDKSFLDM 628


>gi|449530353|ref|XP_004172160.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like, partial [Cucumis sativus]
          Length = 312

 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 140/287 (48%), Gaps = 1/287 (0%)

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
           F+ M      P+  T++A+++  A+ G  E+   ++E+   +G++PD  A++ L + +  
Sbjct: 19  FDEMRTQRCKPNICTFTALVNALAREGLCEKAEEIFEQMQEAGYEPDVYAYNALMESYSR 78

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
           +G   G   +   M+ +G +P+   YN +++A G+AG    A+++F+EM   G+TP  K+
Sbjct: 79  AGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEEMKRIGITPTMKS 138

Query: 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
              L+  Y  A       ++  +M ++    D  + N++LN+   +G   + E LF  M+
Sbjct: 139 HMLLLSAYSSAGNVAKCEDIIGQMHKSGLKPDTFVMNSMLNLYGRLGQFGKMEDLFSTMQ 198

Query: 425 LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484
               C+ D  +Y  ++N+YG  G V+   ELF+ +    +  +V+  T  I    + +  
Sbjct: 199 KGP-CRADISTYNILINVYGRAGFVERMEELFQLLPAKNLEPDVVTWTSRIGAYSRKKLY 257

Query: 485 DDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ 531
              + +F   ID G  PD      LLS  S  E  E V  V+  + +
Sbjct: 258 KRCLELFEKMIDAGCYPDGGTAKVLLSACSSEEQIEQVTNVVRTMHK 304



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 133/263 (50%), Gaps = 7/263 (2%)

Query: 204 QLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAI 263
            + + + +EM +   + +  T++ ++    R  L ++A E FE+M + G  PD   Y+A+
Sbjct: 13  HMAQNIFDEMRTQRCKPNICTFTALVNALAREGLCEKAEEIFEQMQEAGYEPDVYAYNAL 72

Query: 264 LDVYAKSG---KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
           ++ Y+++G      E+ SL +     G +PD  +++++   +G +G ++  + V +EMK 
Sbjct: 73  MESYSRAGFPYGAAEIFSLMQH---MGCEPDRASYNIMVDAYGRAGLHEDAQAVFEEMKR 129

Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380
           +G+ P +  +  LL A   AG       +  +M +SGL PD   + +++ +YG+      
Sbjct: 130 IGITPTMKSHMLLLSAYSSAGNVAKCEDIIGQMHKSGLKPDTFVMNSMLNLYGRLGQFGK 189

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
             +L+  M++     D   YN L+N+    G VE  E LF+ +   +  +PD  ++T+ +
Sbjct: 190 MEDLFSTMQKGPCRADISTYNILINVYGRAGFVERMEELFQLLPAKNL-EPDVVTWTSRI 248

Query: 441 NIYGSGGNVDNAIELFEEMSELG 463
             Y         +ELFE+M + G
Sbjct: 249 GAYSRKKLYKRCLELFEKMIDAG 271



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 81/171 (47%), Gaps = 1/171 (0%)

Query: 342 KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYN 401
           K  +A+++FDEM      P+  T TAL+    +    + A E++E+M+E  +  D   YN
Sbjct: 11  KSHMAQNIFDEMRTQRCKPNICTFTALVNALAREGLCEKAEEIFEQMQEAGYEPDVYAYN 70

Query: 402 TLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461
            L+   +  G    A  +F  M+    C+PD  SY  M++ YG  G  ++A  +FEEM  
Sbjct: 71  ALMESYSRAGFPYGAAEIFSLMQHMG-CEPDRASYNIMVDAYGRAGLHEDAQAVFEEMKR 129

Query: 462 LGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSV 512
           +G+   +     L+     A  +     + G     G+KPD  +   +L++
Sbjct: 130 IGITPTMKSHMLLLSAYSSAGNVAKCEDIIGQMHKSGLKPDTFVMNSMLNL 180



 Score = 43.1 bits (100), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 2/102 (1%)

Query: 199 FGR--QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPD 256
           +GR  QF  +E L + M       D  TY+ +I    R    +   E F+ +    L PD
Sbjct: 181 YGRLGQFGKMEDLFSTMQKGPCRADISTYNILINVYGRAGFVERMEELFQLLPAKNLEPD 240

Query: 257 EVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
            VT+++ +  Y++    +  L L+E+ + +G  PD     VL
Sbjct: 241 VVTWTSRIGAYSRKKLYKRCLELFEKMIDAGCYPDGGTAKVL 282


>gi|87162841|gb|ABD28636.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1053

 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 131/254 (51%), Gaps = 6/254 (2%)

Query: 212 EMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG 271
           EMV   I  D ++Y+ +I    +    +++  +  +M K G++P++VTY+AI+  Y K G
Sbjct: 241 EMVEKGICHDFVSYTILIDGFSKLGDVEKSFTFLAKMIKEGIIPNKVTYTAIMSAYCKKG 300

Query: 272 KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYN 331
           ++EE   L+ R    G + D   F VL   FG  GD+D +  +L EM+  G+ PN+V YN
Sbjct: 301 RIEEAFGLFVRMKDMGIELDEFVFVVLIDGFGRVGDFDRVFQLLVEMEKRGIGPNVVTYN 360

Query: 332 TLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN 391
            ++  + K G+   A    DE  ++ +T D  T + L+  Y +       L+  +R+ E 
Sbjct: 361 AVVNGLSKYGRTQEA----DEFSKN-VTADVVTYSTLLHGYTEEDNVLGILQTKKRLEEA 415

Query: 392 KWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDN 451
              MD ++ N L+     +   E+   L++ M   D   P++ +Y  M++ Y   G ++ 
Sbjct: 416 GISMDVVMCNVLIRALFMMQAYEDVYALYKGMPEMDLV-PNSITYCTMIDGYCKVGKINE 474

Query: 452 AIELFEEMSELGVA 465
           A+E+F++  +  ++
Sbjct: 475 ALEVFDDFRKTSIS 488



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 119/269 (44%), Gaps = 6/269 (2%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           +TY+ ++    +    DE      +M + GL  D V YS  +  Y +   + EV      
Sbjct: 182 VTYTAVVNALCKLGRVDEVCGLVRKMEEDGLDLDVVLYSVWVCGYVEEKVLVEVFRKMRE 241

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
            V  G   D +++++L   F + GD +     L +M   G+ PN V Y  ++ A  K G+
Sbjct: 242 MVEKGICHDFVSYTILIDGFSKLGDVEKSFTFLAKMIKEGIIPNKVTYTAIMSAYCKKGR 301

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
              A  LF  M + G+  DE     LI  +G+        +L   M +     + + YN 
Sbjct: 302 IEEAFGLFVRMKDMGIELDEFVFVVLIDGFGRVGDFDRVFQLLVEMEKRGIGPNVVTYNA 361

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
           ++N  +  G  +EA+      + S     D  +Y+ +L+ Y    NV   ++  + + E 
Sbjct: 362 VVNGLSKYGRTQEAD------EFSKNVTADVVTYSTLLHGYTEEDNVLGILQTKKRLEEA 415

Query: 463 GVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           G++++V+ C  LI+ L   +  +D+  ++
Sbjct: 416 GISMDVVMCNVLIRALFMMQAYEDVYALY 444



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 87/165 (52%), Gaps = 1/165 (0%)

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
           GV  N+V+YN+++  +   G    A  LFD + +  L   E T   LI    +  + +DA
Sbjct: 727 GVNLNIVIYNSIINGLCHDGCLIEAFRLFDSLEKLNLMTSEITYATLIYALCREGYLQDA 786

Query: 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
             ++++M  N +     +YN+LL   + IG +E+A  L  DM+   Y K DN++ ++++N
Sbjct: 787 EHVFKKMVLNGFQPKTQVYNSLLVATSKIGQLEKAFELLNDME-KQYIKFDNFTVSSVIN 845

Query: 442 IYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
            Y   G+++ A+E + +     ++ + +G   +I+ L    R+++
Sbjct: 846 CYCQKGDMEGALEFYYKFKGKDISPDFLGFLYMIRGLCTKGRMEE 890



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 73/324 (22%), Positives = 133/324 (41%), Gaps = 29/324 (8%)

Query: 201 RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER----------MYK 250
           R+F LI  L ++   N+I++ + T+  +       + F++A ++  +          M  
Sbjct: 39  RKFNLIINLFHQFTFNKIQIPHKTHKILTWALLNSHSFNQAEQFMMQNPHTPFGAWDMLI 98

Query: 251 TGLMPDEVTYSAILDV---------YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKM 301
            GL         IL V             GK  EV+ L        +  D    S +   
Sbjct: 99  HGLCSTRENPERILSVLRHCLRFCNVGHVGKAIEVVELMNE-YRKDYPFDDFVCSSVVSA 157

Query: 302 FGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD 361
           F  +G  +   +       +G +PNLV Y  ++ A+ K G+      L  +M E GL  D
Sbjct: 158 FSRAGKPELSLWFFDNF--MGSRPNLVTYTAVVNALCKLGRVDEVCGLVRKMEEDGLDLD 215

Query: 362 EKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFE 421
               +  +  Y + +   +       M E     DF+ Y  L++  + +G VE++     
Sbjct: 216 VVLYSVWVCGYVEEKVLVEVFRKMREMVEKGICHDFVSYTILIDGFSKLGDVEKSFTFLA 275

Query: 422 DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
            M + +   P+  +YTA+++ Y   G ++ A  LF  M ++G+ ++      LI   G  
Sbjct: 276 KM-IKEGIIPNKVTYTAIMSAYCKKGRIEEAFGLFVRMKDMGIELDEFVFVVLIDGFG-- 332

Query: 482 RRIDDLVRVFGVSID---RGVKPD 502
            R+ D  RVF + ++   RG+ P+
Sbjct: 333 -RVGDFDRVFQLLVEMEKRGIGPN 355



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/246 (20%), Positives = 100/246 (40%), Gaps = 39/246 (15%)

Query: 180 QNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIIT--CAKRCNL 237
           Q+  P+  + Y V +  L  G        L   +    + L+ + Y++II   C   C +
Sbjct: 690 QDDLPVMYVDYGVVIHGLCKGGYLNKALDLCTLIEKKGVNLNIVIYNSIINGLCHDGCLI 749

Query: 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
             EA   F+ + K  LM  E+TY+ ++    + G +++   ++++ V +G+         
Sbjct: 750 --EAFRLFDSLEKLNLMTSEITYATLIYALCREGYLQDAEHVFKKMVLNGF--------- 798

Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
                                     QP   VYN+LL A  K G+   A  L ++M +  
Sbjct: 799 --------------------------QPKTQVYNSLLVATSKIGQLEKAFELLNDMEKQY 832

Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417
           +  D  T++++I  Y +    + ALE + + +      DF+ +  ++      G +EE  
Sbjct: 833 IKFDNFTVSSVINCYCQKGDMEGALEFYYKFKGKDISPDFLGFLYMIRGLCTKGRMEETR 892

Query: 418 RLFEDM 423
            +  +M
Sbjct: 893 SVLREM 898



 Score = 46.6 bits (109), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 33/150 (22%), Positives = 64/150 (42%), Gaps = 1/150 (0%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           +++  F+ ++  NL   E  +  +     R G   Q  E +  +MV N  +     Y+++
Sbjct: 750 EAFRLFDSLEKLNLMTSEITYATLIYALCREG-YLQDAEHVFKKMVLNGFQPKTQVYNSL 808

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
           +    +    ++A E    M K  +  D  T S++++ Y + G +E  L  Y +      
Sbjct: 809 LVATSKIGQLEKAFELLNDMEKQYIKFDNFTVSSVINCYCQKGDMEGALEFYYKFKGKDI 868

Query: 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEM 318
            PD + F  + +     G  +  R VL+EM
Sbjct: 869 SPDFLGFLYMIRGLCTKGRMEETRSVLREM 898



 Score = 40.4 bits (93), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 40/200 (20%), Positives = 83/200 (41%), Gaps = 7/200 (3%)

Query: 321 LGVQPNLVV----YNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
           +GVQ +L V    Y  ++  + K G    A  L   + + G+  +     ++I       
Sbjct: 687 MGVQDDLPVMYVDYGVVIHGLCKGGYLNKALDLCTLIEKKGVNLNIVIYNSIINGLCHDG 746

Query: 377 WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY 436
              +A  L++ + +       I Y TL+      G +++AE +F+ M L+ + +P    Y
Sbjct: 747 CLIEAFRLFDSLEKLNLMTSEITYATLIYALCREGYLQDAEHVFKKMVLNGF-QPKTQVY 805

Query: 437 TAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496
            ++L      G ++ A EL  +M +  +  +    + +I C  +   ++  +  +     
Sbjct: 806 NSLLVATSKIGQLEKAFELLNDMEKQYIKFDNFTVSSVINCYCQKGDMEGALEFYYKFKG 865

Query: 497 RGVKPDDRLCGCLLSVVSLC 516
           + + PD    G L  +  LC
Sbjct: 866 KDISPD--FLGFLYMIRGLC 883


>gi|291622145|emb|CBJ23782.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 105/414 (25%), Positives = 179/414 (43%), Gaps = 77/414 (18%)

Query: 161 LNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIEL 220
           L+ LK       F   +KS+  FP   I ++  + ++    +F ++  L  +M +  I  
Sbjct: 57  LSELKLDDAVALFGEMVKSRP-FP-SIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPH 114

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           ++ TYS ++ C  R +    A+    +M K G  PD VT S++L+ Y    ++ E ++L 
Sbjct: 115 NHYTYSILLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALV 174

Query: 281 ERGVASGWKPDPIAFSVL-----------------GKMFGES------------------ 305
           ++ V  G+KPD + F+ L                  +M                      
Sbjct: 175 DQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKR 234

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           GD D    +L++M+   ++ N+V+YNT+++ + K      A  LF++M   G+ PD  T 
Sbjct: 235 GDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTY 294

Query: 366 TALIKI---YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED 422
            +LI     YG  RW+ DA  L   M E K   + + +N+L++  A  G + EAE+LF++
Sbjct: 295 NSLISCLCNYG--RWS-DASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDE 351

Query: 423 M----------------------------------KLSDYCKPDNYSYTAMLNIYGSGGN 448
           M                                   +S  C PD  +Y  ++  +     
Sbjct: 352 MIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKR 411

Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           V+  +ELF EMS+ G+  N +    LIQ L +A   D   ++F   +  GV PD
Sbjct: 412 VEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPD 465



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 141/294 (47%), Gaps = 1/294 (0%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  +M   +IE + + Y+TII    +    D+A + F +M   G+ PD  TY++++    
Sbjct: 243 LLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLC 302

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
             G+  +   L    +     P+ + F+ L   F + G       +  EM    + PN+V
Sbjct: 303 NYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIV 362

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            YN+L+       +   A+ +F  MV     PD  T   LIK + KA+  ++ +EL+  M
Sbjct: 363 TYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREM 422

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
            +     + + YNTL+      G  + A+++F+ M +SD   PD  +Y+ +L+     G 
Sbjct: 423 SQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKM-VSDGVPPDIITYSILLDGLCKYGK 481

Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           ++ A+ +FE + +  +  N+     +I+ + KA +++D   +F     +GVKP+
Sbjct: 482 LEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPN 535



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 149/295 (50%), Gaps = 5/295 (1%)

Query: 192 VTMKSL--RFGRQFQLIE--QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           VT  SL   F ++ +LIE  +L +EM+   I+ + +TY+++I      +  DEA + F  
Sbjct: 327 VTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTL 386

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M     +PD VTY+ ++  + K+ +VEE + L+      G   + + ++ L +   ++GD
Sbjct: 387 MVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGD 446

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
            D  + + ++M S GV P+++ Y+ LL+ + K GK   A  +F+ + +S + P+  T   
Sbjct: 447 CDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNI 506

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           +I+   KA   +D  +L+  +       + I+Y T+++     GL EEA+ LF +MK  D
Sbjct: 507 MIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMK-ED 565

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKAR 482
              PD+  Y  ++      G+   + EL +EM   G   +    + +I  L   R
Sbjct: 566 GTLPDSGCYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVINMLHDGR 620



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 140/289 (48%), Gaps = 1/289 (0%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
            + YN  +  L   +       L N+M +  I+ D  TY+++I+C      + +A     
Sbjct: 256 VVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLS 315

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
            M +  + P+ VT+++++D +AK GK+ E   L++  +     P+ + ++ L   F    
Sbjct: 316 DMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHD 375

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
             D  + +   M S    P++V YNTL++   KA +      LF EM + GL  +  T  
Sbjct: 376 RLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYN 435

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
            LI+   +A     A +++++M  +  P D I Y+ LL+     G +E+A  +FE ++ S
Sbjct: 436 TLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKS 495

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLI 475
              +P+ Y+Y  M+      G V++  +LF  +S  GV  NV+  T +I
Sbjct: 496 KM-EPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMI 543



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/338 (22%), Positives = 157/338 (46%), Gaps = 3/338 (0%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  EMV +      I +S +++   + N FD  I   E+M   G+  +  TYS +L+ + 
Sbjct: 68  LFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILLNCFC 127

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           +  ++   L++  + +  G++PD +  S L   +           ++ +M  +G +P+ V
Sbjct: 128 RRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMVEMGYKPDTV 187

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            +NTL+  +    K   A +L D MV  G  PD  T   ++    K      AL L ++M
Sbjct: 188 TFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKM 247

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
            + K   + ++YNT+++       +++A  LF  M+ +   KPD ++Y ++++   + G 
Sbjct: 248 EKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKME-TKGIKPDVFTYNSLISCLCNYGR 306

Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGC 508
             +A  L  +M E  +  NV+    LI    K  ++ +  ++F   I R + P+      
Sbjct: 307 WSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNS 366

Query: 509 LLSVVSLCETSEDVGKVITCLQQAN--PKLVAFLNLIE 544
           L++   + +  ++  ++ T +   +  P +V +  LI+
Sbjct: 367 LINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIK 404



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 140/277 (50%), Gaps = 7/277 (2%)

Query: 272 KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYN 331
           K+++ ++L+   V S   P  I FS L     +   +D +  + ++M++LG+  N   Y+
Sbjct: 61  KLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYS 120

Query: 332 TLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN 391
            LL    +  +  LA ++  +M++ G  PD  TL++L+  Y   +   +A+ L ++M E 
Sbjct: 121 ILLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMVEM 180

Query: 392 KWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDN 451
            +  D + +NTL++         EA  L + M ++  C+PD ++Y  ++N     G++D 
Sbjct: 181 GYKPDTVTFNTLIHGLFLHNKASEAVALIDRM-VARGCQPDLFTYGTVVNGLCKRGDIDL 239

Query: 452 AIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD----DRLCG 507
           A+ L ++M +  +  NV+    +I  L K + +DD   +F     +G+KPD    + L  
Sbjct: 240 ALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLIS 299

Query: 508 CLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIE 544
           CL +     + S  +  +I   ++ NP +V F +LI+
Sbjct: 300 CLCNYGRWSDASRLLSDMIE--RKINPNVVTFNSLID 334



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 105/217 (48%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           + YN  +       +    +Q+   MVS +   D +TY+T+I    +    +E +E F  
Sbjct: 362 VTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFRE 421

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M + GL+ + VTY+ ++    ++G  +    ++++ V+ G  PD I +S+L     + G 
Sbjct: 422 MSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGK 481

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
            +    V + ++   ++PN+  YN ++E M KAGK      LF  +   G+ P+    T 
Sbjct: 482 LEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTT 541

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
           +I  + +    ++A  L+  M+E+    D   YNTL+
Sbjct: 542 MISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLI 578



 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 114/236 (48%), Gaps = 1/236 (0%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           F  + S++  P + + YN  +K     ++ +   +L  EM    +  + +TY+T+I    
Sbjct: 384 FTLMVSKDCLP-DVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLF 442

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
           +    D A + F++M   G+ PD +TYS +LD   K GK+E+ L ++E    S  +P+  
Sbjct: 443 QAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIY 502

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
            ++++ +   ++G  +    +   +   GV+PN+++Y T++    + G    A +LF EM
Sbjct: 503 TYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREM 562

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCAD 409
            E G  PD      LI+   +      + EL + MR   +  D    + ++NM  D
Sbjct: 563 KEDGTLPDSGCYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVINMLHD 618



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 98/206 (47%)

Query: 179 SQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLF 238
           SQ      T+ YN  ++ L       + +++  +MVS+ +  D ITYS ++    +    
Sbjct: 423 SQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKL 482

Query: 239 DEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
           ++A+  FE + K+ + P+  TY+ +++   K+GKVE+   L+      G KP+ I ++ +
Sbjct: 483 EKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTM 542

Query: 299 GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
              F   G  +    + +EMK  G  P+   YNTL+ A  + G    +  L  EM   G 
Sbjct: 543 ISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGDKAASAELIKEMRSCGF 602

Query: 359 TPDEKTLTALIKIYGKARWAKDALEL 384
             D  T++ +I +    R  K  LE+
Sbjct: 603 VGDASTISMVINMLHDGRLEKSYLEM 628


>gi|224109690|ref|XP_002315278.1| predicted protein [Populus trichocarpa]
 gi|222864318|gb|EEF01449.1| predicted protein [Populus trichocarpa]
          Length = 728

 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/364 (25%), Positives = 157/364 (43%), Gaps = 43/364 (11%)

Query: 177 IKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANE---MVSNEIELDNITYSTIITCAK 233
           +K++ LFP  T F  + +   R G     +++ AN    M  N +  D  TY+ +I+   
Sbjct: 258 MKNKGLFPNRTTFNILVVGCCRLG----WLKEAANVIELMSQNSVVPDAWTYNVMISGFC 313

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
           +     EA+   E M    L PD VTY+ +++   + G  EE   L E     G KP+ +
Sbjct: 314 KQGRIAEAMRLREEMENLKLSPDVVTYNTLINGCFEHGSSEEGFKLIEEMEGRGMKPNSV 373

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
            ++V+ K F + G  D +   +++M+  G  P++V YNTL+    K GK   A  L DEM
Sbjct: 374 TYNVMVKWFVKKGKMDEVDKTVRKMEESGCLPDIVTYNTLISWHCKVGKMDEAFRLMDEM 433

Query: 354 VESGLTPDEKTLTALIKI-----------------------------------YGKARWA 378
              GL  D+ TL  +++                                    Y K   A
Sbjct: 434 GRKGLKMDDVTLNTMLRALCRERKLDEAHDLLCSARRRGYFVDEVSYGTLIIGYFKHEKA 493

Query: 379 KDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTA 438
             AL LW+ M+E +     I YN+++     +G   +A    +++ L     PD  +Y  
Sbjct: 494 SQALRLWDEMKEKEIIPSIITYNSMIAGLCQMGKTNQAIDKLDEL-LESGLVPDEITYNT 552

Query: 439 MLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRG 498
           +++ Y   G V+ A +   +M E     +V+ C  L+  L K   ++  +++F   I +G
Sbjct: 553 IIHGYCQEGQVEKAFQFHNKMVEKNFKPDVVTCNTLLCGLCKEGMLEKALKLFNTWISKG 612

Query: 499 VKPD 502
              D
Sbjct: 613 KDVD 616



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 137/315 (43%), Gaps = 34/315 (10%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
           ++ YNV +K      +   +++   +M  +    D +TY+T+I+   +    DEA    +
Sbjct: 372 SVTYNVMVKWFVKKGKMDEVDKTVRKMEESGCLPDIVTYNTLISWHCKVGKMDEAFRLMD 431

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
            M + GL  D+VT + +L    +  K++E   L       G+  D +++  L   + +  
Sbjct: 432 EMGRKGLKMDDVTLNTMLRALCRERKLDEAHDLLCSARRRGYFVDEVSYGTLIIGYFKHE 491

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
                  +  EMK   + P+++ YN+++  + + GK   A    DE++ESGL PDE T  
Sbjct: 492 KASQALRLWDEMKEKEIIPSIITYNSMIAGLCQMGKTNQAIDKLDELLESGLVPDEITYN 551

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLF------ 420
            +I  Y +    + A +   +M E  +  D +  NTLL      G++E+A +LF      
Sbjct: 552 TIIHGYCQEGQVEKAFQFHNKMVEKNFKPDVVTCNTLLCGLCKEGMLEKALKLFNTWISK 611

Query: 421 -EDMKLSDY-------CK--------------------PDNYSYTAMLNIYGSGGNVDNA 452
            +D+    Y       CK                    PD Y+Y A+L      G + +A
Sbjct: 612 GKDVDAVSYNTIILSLCKEKRFGEAFDLLEEMEEKKLGPDCYTYNAILGGLTDAGRMKDA 671

Query: 453 IELFEEMSELGVAIN 467
            E   +++E G + N
Sbjct: 672 EEFISKIAEKGKSEN 686



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 82/361 (22%), Positives = 157/361 (43%), Gaps = 16/361 (4%)

Query: 151 QPTRENALLILNSLKFWQKSY-------FFFNWIK---SQNLFPMETIFYNVTMKSLRFG 200
           QPT      +LN+L  +  S+        F ++IK     N      + +   M++ RFG
Sbjct: 156 QPTLLTCNTLLNALVRFPSSHSIRLSKAVFTDFIKIGVKINTNSFNILIHGSCMEN-RFG 214

Query: 201 RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTY 260
              +++     +M       DNITY+TI+    +    +EA +    M   GL P+  T+
Sbjct: 215 EAIRVL----GKMRDYGCPPDNITYNTILDGLCKKGRLNEARDLLLDMKNKGLFPNRTTF 270

Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
           + ++    + G ++E  ++ E    +   PD   ++V+   F + G       + +EM++
Sbjct: 271 NILVVGCCRLGWLKEAANVIELMSQNSVVPDAWTYNVMISGFCKQGRIAEAMRLREEMEN 330

Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380
           L + P++V YNTL+    + G       L +EM   G+ P+  T   ++K + K     +
Sbjct: 331 LKLSPDVVTYNTLINGCFEHGSSEEGFKLIEEMEGRGMKPNSVTYNVMVKWFVKKGKMDE 390

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
             +   +M E+    D + YNTL++    +G ++EA RL ++M      K D+ +   ML
Sbjct: 391 VDKTVRKMEESGCLPDIVTYNTLISWHCKVGKMDEAFRLMDEMGRKGL-KMDDVTLNTML 449

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
                   +D A +L       G  ++ +    LI    K  +    +R++    ++ + 
Sbjct: 450 RALCRERKLDEAHDLLCSARRRGYFVDEVSYGTLIIGYFKHEKASQALRLWDEMKEKEII 509

Query: 501 P 501
           P
Sbjct: 510 P 510



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 103/213 (48%), Gaps = 17/213 (7%)

Query: 159 LILNSLKFWQKSYFFFNW--IKSQNLFPMETIFYNVTMKSL-RFGRQFQLIEQLANEMVS 215
           LI+   K  + S     W  +K + + P   I YN  +  L + G+  Q I++L +E++ 
Sbjct: 483 LIIGYFKHEKASQALRLWDEMKEKEIIP-SIITYNSMIAGLCQMGKTNQAIDKL-DELLE 540

Query: 216 NEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEE 275
           + +  D ITY+TII    +    ++A ++  +M +    PD VT + +L    K G +E+
Sbjct: 541 SGLVPDEITYNTIIHGYCQEGQVEKAFQFHNKMVEKNFKPDVVTCNTLLCGLCKEGMLEK 600

Query: 276 VLSLYERGVASGWKPDPIAFSVL------GKMFGESGDYDGIRYVLQEMKSLGVQPNLVV 329
            L L+   ++ G   D ++++ +       K FGE+ D      +L+EM+   + P+   
Sbjct: 601 ALKLFNTWISKGKDVDAVSYNTIILSLCKEKRFGEAFD------LLEEMEEKKLGPDCYT 654

Query: 330 YNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
           YN +L  +  AG+   A     ++ E G + ++
Sbjct: 655 YNAILGGLTDAGRMKDAEEFISKIAEKGKSENQ 687



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 74/325 (22%), Positives = 135/325 (41%), Gaps = 50/325 (15%)

Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGK---AGKPGLARSLFDEMVESGLTPDEKTLTALIK 370
           +   MK LG+QP L+  NTLL A+ +   +    L++++F + ++ G+  +  +   LI 
Sbjct: 146 IFNRMKRLGMQPTLLTCNTLLNALVRFPSSHSIRLSKAVFTDFIKIGVKINTNSFNILIH 205

Query: 371 IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK------ 424
                    +A+ +  +MR+   P D I YNT+L+     G + EA  L  DMK      
Sbjct: 206 GSCMENRFGEAIRVLGKMRDYGCPPDNITYNTILDGLCKKGRLNEARDLLLDMKNKGLFP 265

Query: 425 --------LSDYCK--------------------PDNYSYTAMLNIYGSGGNVDNAIELF 456
                   +   C+                    PD ++Y  M++ +   G +  A+ L 
Sbjct: 266 NRTTFNILVVGCCRLGWLKEAANVIELMSQNSVVPDAWTYNVMISGFCKQGRIAEAMRLR 325

Query: 457 EEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLC 516
           EEM  L ++ +V+    LI    +    ++  ++      RG+KP+      ++      
Sbjct: 326 EEMENLKLSPDVVTYNTLINGCFEHGSSEEGFKLIEEMEGRGMKPNSVTYNVMVKWFVKK 385

Query: 517 ETSEDVGKVITCLQQAN--PKLVAFLNLIE------DNSTGFENIKEEFRNVIKDTEVDA 568
              ++V K +  ++++   P +V +  LI            F  + E  R  +K  +V  
Sbjct: 386 GKMDEVDKTVRKMEESGCLPDIVTYNTLISWHCKVGKMDEAFRLMDEMGRKGLKMDDVTL 445

Query: 569 RRPFCNCLIDICRNRNLNERAHELL 593
                  L  +CR R L+E AH+LL
Sbjct: 446 N----TMLRALCRERKLDE-AHDLL 465


>gi|115458970|ref|NP_001053085.1| Os04g0477200 [Oryza sativa Japonica Group]
 gi|113564656|dbj|BAF14999.1| Os04g0477200, partial [Oryza sativa Japonica Group]
          Length = 528

 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 91/370 (24%), Positives = 170/370 (45%), Gaps = 17/370 (4%)

Query: 183 FPMETIFYNVTMKSL----RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLF 238
            P+ T  +N+ ++ L    +  R  +L+ Q+           + +TY+T+I         
Sbjct: 110 LPLCTTTFNIMLRHLCSAGKPARALELLRQMPRP--------NAVTYNTVIAGFCSRGRV 161

Query: 239 DEAIEWFERMY-KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG-WKPDPIAFS 296
             A++    M  + G+ P++ TY  ++  + K G+V+E + +++  +  G  KP+ + ++
Sbjct: 162 QAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYN 221

Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356
            L   + + G  D        M   GV   +  YN L+ A+   G+   A  L +EM   
Sbjct: 222 ALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGK 281

Query: 357 GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEA 416
           GL PD  T   LI  + K    K ALE++E M         + Y  L+   +  G V+E 
Sbjct: 282 GLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQET 341

Query: 417 ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
           ++LF D  +    +PD   Y A++N + + GN+D A E+  EM +  +A + +    L++
Sbjct: 342 DKLF-DEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMR 400

Query: 477 CLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQA--NP 534
            L    R+D+  ++     +RG++PD      L+S  S+    +D  ++   +     NP
Sbjct: 401 GLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNP 460

Query: 535 KLVAFLNLIE 544
            L+ +  LI+
Sbjct: 461 TLLTYNALIQ 470



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 123/256 (48%), Gaps = 1/256 (0%)

Query: 185 METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEW 244
           M    YN+ + +L    +     +L  EM    +  D  TY+ +I    +     +A+E 
Sbjct: 250 MTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEI 309

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
           FE M + G+    VTY+A++   +K G+V+E   L++  V  G +PD + ++ L      
Sbjct: 310 FENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHST 369

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
           SG+ D    ++ EM+   + P+ V YNTL+  +   G+   AR L DEM E G+ PD  T
Sbjct: 370 SGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVT 429

Query: 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
              LI  Y      KDAL +   M    +    + YN L+      G  ++AE + ++M 
Sbjct: 430 YNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEM- 488

Query: 425 LSDYCKPDNYSYTAML 440
           + +   PD+ +Y +++
Sbjct: 489 VENGITPDDSTYISLI 504



 Score =  112 bits (280), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 149/342 (43%), Gaps = 45/342 (13%)

Query: 218 IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTG-LMPDEVTYSAILDVYAKSGKVEEV 276
           I  +  TY T+I+   +    DEA++ F+ M   G + P+ V Y+A++  Y   GK++  
Sbjct: 177 IAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTA 236

Query: 277 L----SLYERGVA-------------------------------SGWKPDPIAFSVLGKM 301
           L     + ERGVA                                G  PD   +++L   
Sbjct: 237 LLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILING 296

Query: 302 FGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD 361
             + G+      + + M   GV+  +V Y  L+ A+ K G+      LFDE V  G+ PD
Sbjct: 297 HCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPD 356

Query: 362 EKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFE 421
                ALI  +  +     A E+   M + +   D + YNTL+     +G V+EA +L +
Sbjct: 357 LVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLID 416

Query: 422 DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
           +M      +PD  +Y  +++ Y   G+V +A+ +  EM   G    ++    LIQ L K 
Sbjct: 417 EMT-ERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKN 475

Query: 482 RRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCE--TSED 521
            + DD   +    ++ G+ PDD       + +SL E  T+ED
Sbjct: 476 GQGDDAENMVKEMVENGITPDDS------TYISLIEGLTTED 511



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 89/183 (48%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           + Y   + +L    Q Q  ++L +E V   I  D + Y+ +I         D A E    
Sbjct: 323 VTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGE 382

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M K  + PD+VTY+ ++      G+V+E   L +     G +PD + ++ L   +   GD
Sbjct: 383 MEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGD 442

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
                 +  EM + G  P L+ YN L++ + K G+   A ++  EMVE+G+TPD+ T  +
Sbjct: 443 VKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYIS 502

Query: 368 LIK 370
           LI+
Sbjct: 503 LIE 505



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 82/325 (25%), Positives = 135/325 (41%), Gaps = 16/325 (4%)

Query: 241 AIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY----ERGVASGWKPDPIAFS 296
           A+E   +M +    P+ VTY+ ++  +   G+V+  L +     ERG   G  P+   + 
Sbjct: 133 ALELLRQMPR----PNAVTYNTVIAGFCSRGRVQAALDIMREMRERG---GIAPNQYTYG 185

Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLG-VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVE 355
            +   + + G  D    V  EM + G V+P  V+YN L+      GK   A    D MVE
Sbjct: 186 TVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVE 245

Query: 356 SGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEE 415
            G+     T   L+          +A EL E M       D   YN L+N     G V++
Sbjct: 246 RGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKK 305

Query: 416 AERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLI 475
           A  +FE+M      +    +YTA++      G V    +LF+E    G+  +++    LI
Sbjct: 306 ALEIFENMSRRG-VRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALI 364

Query: 476 QCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ--AN 533
                +  ID    + G    + + PDD     L+  + L    ++  K+I  + +    
Sbjct: 365 NSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQ 424

Query: 534 PKLVAFLNLIEDNSTGFENIKEEFR 558
           P LV +  LI   S    ++K+  R
Sbjct: 425 PDLVTYNTLISGYSMK-GDVKDALR 448


>gi|449444222|ref|XP_004139874.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
 gi|449492651|ref|XP_004159061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
          Length = 588

 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 149/317 (47%), Gaps = 34/317 (10%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           I+YS II    +   ++EAI  F  M   G+ P+ VT+S ++D+  K G+V +   L E 
Sbjct: 238 ISYSIIIDGLCKVGNWEEAICLFNEMVDQGVQPNVVTFSVLIDMLCKEGQVIKAKKLLEM 297

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
            +  G  P+   ++ L K F   GD +  + +   M S G +P+++ YN L+    K  K
Sbjct: 298 MIQIGIVPNLFTYTSLIKGFCLVGDLNSAKELFVSMPSKGYEPDVISYNMLINGYCKTLK 357

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
              A  LF+EM+  G+ PD KT   L+K    A    DA EL+  ++    P D  +   
Sbjct: 358 VEEAMKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELFRVIKPYAMPKDLCICCI 417

Query: 403 LLNMCADIGLVEEAERLFEDMK--------------LSDYCK------------------ 430
            L+     G + EA +LF +++              +   CK                  
Sbjct: 418 FLDGLCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEEG 477

Query: 431 --PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLV 488
             PD  +Y++M++ +   G VD A  LF++M E G + +++  + L++   ++ +++ +V
Sbjct: 478 IQPDAMAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLITYSILMRGFYESNKLEKVV 537

Query: 489 RVFGVSIDRGVKPDDRL 505
           ++    I++ V PDD +
Sbjct: 538 QLLHRMIEKDVWPDDGI 554



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 133/288 (46%), Gaps = 11/288 (3%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERM------YKTGLMPDEVTYSAILDVYAKSGKVEEV 276
           +TY T+I         + A++W + M      Y     P+ ++YS I+D   K G  EE 
Sbjct: 197 VTYGTLIKGLCALGNINIALKWHQEMLNDTSPYVFNCRPNVISYSIIIDGLCKVGNWEEA 256

Query: 277 LSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA 336
           + L+   V  G +P+ + FSVL  M  + G     + +L+ M  +G+ PNL  Y +L++ 
Sbjct: 257 ICLFNEMVDQGVQPNVVTFSVLIDMLCKEGQVIKAKKLLEMMIQIGIVPNLFTYTSLIKG 316

Query: 337 MGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW-ERMRENKWPM 395
               G    A+ LF  M   G  PD  +   LI  Y K    ++A++L+ E +    WP 
Sbjct: 317 FCLVGDLNSAKELFVSMPSKGYEPDVISYNMLINGYCKTLKVEEAMKLFNEMLHVGMWP- 375

Query: 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAM-LNIYGSGGNVDNAIE 454
           D      LL      G V++A+ LF  +K   Y  P +     + L+     G +  A++
Sbjct: 376 DVKTSGVLLKALFLAGKVDDAKELFRVIK--PYAMPKDLCICCIFLDGLCKNGYIFEAMK 433

Query: 455 LFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           LF E+    + +++    CLI  L KA +++    +F    + G++PD
Sbjct: 434 LFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEEGIQPD 481



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 92/361 (25%), Positives = 162/361 (44%), Gaps = 12/361 (3%)

Query: 185 METIF-YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           M +IF +N  +  L     +  +  L  +M    +  D +T + +I C    N  +E + 
Sbjct: 88  MRSIFSFNRLLAGLAKIEHYSQVFSLYKQMHLAGLWPDLLTLNILINCLCNVNRINEGLA 147

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
               + + G +PD VT++ ++       ++ E   L+ R    G  P+ + +  L K   
Sbjct: 148 AMAGIMRRGYIPDVVTFTTLIKGLCVEHRIIEATKLFMRMQKLGCTPNVVTYGTLIKGLC 207

Query: 304 ESGDYDGIRYVLQEMKS------LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
             G+ +      QEM +         +PN++ Y+ +++ + K G    A  LF+EMV+ G
Sbjct: 208 ALGNINIALKWHQEMLNDTSPYVFNCRPNVISYSIIIDGLCKVGNWEEAICLFNEMVDQG 267

Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417
           + P+  T + LI +  K      A +L E M +     +   Y +L+     +G +  A+
Sbjct: 268 VQPNVVTFSVLIDMLCKEGQVIKAKKLLEMMIQIGIVPNLFTYTSLIKGFCLVGDLNSAK 327

Query: 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
            LF  M    Y +PD  SY  ++N Y     V+ A++LF EM  +G+  +V     L++ 
Sbjct: 328 ELFVSMPSKGY-EPDVISYNMLINGYCKTLKVEEAMKLFNEMLHVGMWPDVKTSGVLLKA 386

Query: 478 LGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSE--DVGKVITCLQQANPK 535
           L  A ++DD   +F V I     P D LC C + +  LC+     +  K+   L+  N K
Sbjct: 387 LFLAGKVDDAKELFRV-IKPYAMPKD-LCICCIFLDGLCKNGYIFEAMKLFNELESYNMK 444

Query: 536 L 536
           L
Sbjct: 445 L 445



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 84/368 (22%), Positives = 166/368 (45%), Gaps = 16/368 (4%)

Query: 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
           + +    +++M+  GL PD +T + +++      ++ E L+     +  G+ PD + F+ 
Sbjct: 107 YSQVFSLYKQMHLAGLWPDLLTLNILINCLCNVNRINEGLAAMAGIMRRGYIPDVVTFTT 166

Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES- 356
           L K             +   M+ LG  PN+V Y TL++ +   G   +A     EM+   
Sbjct: 167 LIKGLCVEHRIIEATKLFMRMQKLGCTPNVVTYGTLIKGLCALGNINIALKWHQEMLNDT 226

Query: 357 -----GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411
                   P+  + + +I    K    ++A+ L+  M +     + + ++ L++M    G
Sbjct: 227 SPYVFNCRPNVISYSIIIDGLCKVGNWEEAICLFNEMVDQGVQPNVVTFSVLIDMLCKEG 286

Query: 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC 471
            V +A++L E M +     P+ ++YT+++  +   G++++A ELF  M   G   +V+  
Sbjct: 287 QVIKAKKLLE-MMIQIGIVPNLFTYTSLIKGFCLVGDLNSAKELFVSMPSKGYEPDVISY 345

Query: 472 TCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQ- 530
             LI    K  ++++ +++F   +  G+ PD +  G LL  + L    +D  ++   ++ 
Sbjct: 346 NMLINGYCKTLKVEEAMKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELFRVIKP 405

Query: 531 QANPK----LVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLID-ICRNRNL 585
            A PK       FL+ +  N   FE +K    N ++   +        CLID +C+   L
Sbjct: 406 YAMPKDLCICCIFLDGLCKNGYIFEAMK--LFNELESYNMKLDIETFGCLIDGLCKAGKL 463

Query: 586 NERAHELL 593
            E A EL 
Sbjct: 464 -ETAWELF 470



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 102/231 (44%), Gaps = 1/231 (0%)

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
           ++L   M S   E D I+Y+ +I    +    +EA++ F  M   G+ PD  T   +L  
Sbjct: 327 KELFVSMPSKGYEPDVISYNMLINGYCKTLKVEEAMKLFNEMLHVGMWPDVKTSGVLLKA 386

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
              +GKV++   L+          D     +      ++G       +  E++S  ++ +
Sbjct: 387 LFLAGKVDDAKELFRVIKPYAMPKDLCICCIFLDGLCKNGYIFEAMKLFNELESYNMKLD 446

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
           +  +  L++ + KAGK   A  LF+++ E G+ PD    +++I  + K      A  L++
Sbjct: 447 IETFGCLIDGLCKAGKLETAWELFEKLYEEGIQPDAMAYSSMIHGFCKKGQVDKANILFQ 506

Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYT 437
           +M EN    D I Y+ L+    +   +E+  +L   M   D   PD+  Y 
Sbjct: 507 KMEENGCSPDLITYSILMRGFYESNKLEKVVQLLHRMIEKDV-WPDDGIYA 556



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 72/153 (47%)

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           EA++ F  +    +  D  T+  ++D   K+GK+E    L+E+    G +PD +A+S + 
Sbjct: 430 EAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEEGIQPDAMAYSSMI 489

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
             F + G  D    + Q+M+  G  P+L+ Y+ L+    ++ K      L   M+E  + 
Sbjct: 490 HGFCKKGQVDKANILFQKMEENGCSPDLITYSILMRGFYESNKLEKVVQLLHRMIEKDVW 549

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENK 392
           PD+     +  +  K    K+ L+L +R    K
Sbjct: 550 PDDGIYAIVEDMVCKDEKYKEWLDLLQRFFVQK 582



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 100/215 (46%), Gaps = 3/215 (1%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + I YN+ +       + +   +L NEM+   +  D  T   ++         D+A E F
Sbjct: 341 DVISYNMLINGYCKTLKVEEAMKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELF 400

Query: 246 ERMYKTGLMPDEVTYSAI-LDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
            R+ K   MP ++    I LD   K+G + E + L+    +   K D   F  L     +
Sbjct: 401 -RVIKPYAMPKDLCICCIFLDGLCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCK 459

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
           +G  +    + +++   G+QP+ + Y++++    K G+   A  LF +M E+G +PD  T
Sbjct: 460 AGKLETAWELFEKLYEEGIQPDAMAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLIT 519

Query: 365 LTALIKIYGKARWAKDALELWERMRE-NKWPMDFI 398
            + L++ + ++   +  ++L  RM E + WP D I
Sbjct: 520 YSILMRGFYESNKLEKVVQLLHRMIEKDVWPDDGI 554



 Score = 45.4 bits (106), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 69/139 (49%), Gaps = 7/139 (5%)

Query: 173 FFNWIKSQNL-FPMETI--FYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTII 229
            FN ++S N+   +ET     +   K+ +    ++L E+L  E     I+ D + YS++I
Sbjct: 434 LFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEE----GIQPDAMAYSSMI 489

Query: 230 TCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWK 289
               +    D+A   F++M + G  PD +TYS ++  + +S K+E+V+ L  R +     
Sbjct: 490 HGFCKKGQVDKANILFQKMEENGCSPDLITYSILMRGFYESNKLEKVVQLLHRMIEKDVW 549

Query: 290 PDPIAFSVLGKMFGESGDY 308
           PD   ++++  M  +   Y
Sbjct: 550 PDDGIYAIVEDMVCKDEKY 568


>gi|55709857|gb|AAV58825.1| hypothetical protein [Arabidopsis thaliana]
          Length = 946

 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 96/371 (25%), Positives = 159/371 (42%), Gaps = 46/371 (12%)

Query: 205 LIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAIL 264
           L E+  +EM++  + L+ I  S+   C      +++A      M   G +PD  TYS +L
Sbjct: 390 LAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVL 449

Query: 265 DVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQ 324
           +    + K+E    L+E     G   D   ++++   F ++G  +  R    EM+ +G  
Sbjct: 450 NYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCT 509

Query: 325 PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384
           PN+V Y  L+ A  KA K   A  LF+ M+  G  P+  T +ALI  + KA   + A ++
Sbjct: 510 PNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQI 569

Query: 385 WERM----------------RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428
           +ERM                 +N    + + Y  LL+       VEEA +L + M +   
Sbjct: 570 FERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEG- 628

Query: 429 CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLV 488
           C+P+   Y A+++     G +D A E+  EMSE G    +   + LI    K +R D   
Sbjct: 629 CEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLAS 688

Query: 489 RVFGVSIDRGVKPD--------DRLC------------------GCLLSVVSLCETSED- 521
           +V    ++    P+        D LC                  GC  +VV+     +  
Sbjct: 689 KVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGF 748

Query: 522 --VGKVITCLQ 530
             +GK+ TCL+
Sbjct: 749 GMIGKIETCLE 759



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/370 (24%), Positives = 160/370 (43%), Gaps = 53/370 (14%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           ++K++     +  Q   P +T  Y+  +  L    + +L   L  EM    +  D  TY+
Sbjct: 423 YEKAFSVIREMIGQGFIP-DTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYT 481

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDE----------------------------- 257
            ++    +  L ++A +WF  M + G  P+                              
Sbjct: 482 IMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSE 541

Query: 258 ------VTYSAILDVYAKSGKVEEVLSLYERGVAS----------------GWKPDPIAF 295
                 VTYSA++D + K+G+VE+   ++ER   S                  +P+ + +
Sbjct: 542 GCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTY 601

Query: 296 SVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVE 355
             L   F +S   +  R +L  M   G +PN +VY+ L++ + K GK   A+ +  EM E
Sbjct: 602 GALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSE 661

Query: 356 SGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEE 415
            G      T ++LI  Y K +    A ++  +M EN    + ++Y  +++    +G  +E
Sbjct: 662 HGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDE 721

Query: 416 AERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLI 475
           A +L + M+    C+P+  +YTAM++ +G  G ++  +EL E M   GVA N +    LI
Sbjct: 722 AYKLMQMME-EKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLI 780

Query: 476 QCLGKARRID 485
               K   +D
Sbjct: 781 DHCCKNGALD 790



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 140/331 (42%), Gaps = 59/331 (17%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV---YAKSGKVEEVL 277
           D + Y+ +I+     +LF+EA+++  RM  T  +P+ VTYS +L       + G+ + VL
Sbjct: 260 DTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVL 319

Query: 278 SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLL--- 334
           ++    +  G  P P  F+ L   +  SGD+     +L++M   G  P  VVYN L+   
Sbjct: 320 NMM---MMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSI 376

Query: 335 --------------------------------------EAMGKAGKPGLARSLFDEMVES 356
                                                   +  AGK   A S+  EM+  
Sbjct: 377 CGDKDSLNFDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQ 436

Query: 357 GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEA 416
           G  PD  T + ++     A   + A  L+E M+      D   Y  +++     GL+E+A
Sbjct: 437 GFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQA 496

Query: 417 ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
            + F +M+    C P+  +YTA+++ Y     V  A ELFE M   G   N++  + LI 
Sbjct: 497 RKWFNEMREVG-CTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALID 555

Query: 477 CLGKARRIDDLVRVFGVSIDRGVKPDDRLCG 507
              KA +++   ++F           +R+CG
Sbjct: 556 GHCKAGQVEKACQIF-----------ERMCG 575



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/304 (24%), Positives = 127/304 (41%), Gaps = 18/304 (5%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           FN ++     P   + Y   + +    ++     +L   M+S     + +TYS +I    
Sbjct: 500 FNEMREVGCTP-NVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHC 558

Query: 234 RCNLFDEAIEWFERMYKTGLMPDE----------------VTYSAILDVYAKSGKVEEVL 277
           +    ++A + FERM  +  +PD                 VTY A+LD + KS +VEE  
Sbjct: 559 KAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEAR 618

Query: 278 SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
            L +     G +P+ I +  L     + G  D  + V  EM   G    L  Y++L++  
Sbjct: 619 KLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRY 678

Query: 338 GKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDF 397
            K  +  LA  +  +M+E+   P+    T +I    K     +A +L + M E     + 
Sbjct: 679 FKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNV 738

Query: 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE 457
           + Y  +++    IG +E    L E M  S    P+  +Y  +++     G +D A  L E
Sbjct: 739 VTYTAMIDGFGMIGKIETCLELLERMG-SKGVAPNYVTYRVLIDHCCKNGALDVAHNLLE 797

Query: 458 EMSE 461
           EM +
Sbjct: 798 EMKQ 801



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 69/319 (21%), Positives = 125/319 (39%), Gaps = 43/319 (13%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           TY+ +I    + +  D A      M    L  D  T         K GK  E L+L E  
Sbjct: 196 TYNCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRCFAYSLCKVGKWREALTLVE-- 253

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
               + PD + ++ L     E+  ++     L  M++    PN+V Y+TLL       + 
Sbjct: 254 -TENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQL 312

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
           G  + + + M+  G  P  K   +L+  Y  +     A +L ++M +      +++YN L
Sbjct: 313 GRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNIL 372

Query: 404 L-NMCAD-----IGLVEEAERLFEDM----------KLSDYCK----------------- 430
           + ++C D       L++ AE+ + +M           +S + +                 
Sbjct: 373 IGSICGDKDSLNFDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIRE 432

Query: 431 -------PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483
                  PD  +Y+ +LN   +   ++ A  LFEEM   G+  +V   T ++    KA  
Sbjct: 433 MIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGL 492

Query: 484 IDDLVRVFGVSIDRGVKPD 502
           I+   + F    + G  P+
Sbjct: 493 IEQARKWFNEMREVGCTPN 511


>gi|297745184|emb|CBI39176.3| unnamed protein product [Vitis vinifera]
          Length = 996

 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/316 (26%), Positives = 143/316 (45%), Gaps = 17/316 (5%)

Query: 203 FQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSA 262
            +L E+   EM+   + L+ +  S +  C      F++A      M   G +PD  TYS 
Sbjct: 426 LELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSK 485

Query: 263 ILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG 322
           ++ +   + KV+    L+E   ++   PD   +++L   F + G     R    EM   G
Sbjct: 486 VIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDG 545

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382
             PN+V Y  L+ A  KA K   A  LF+ M+  G  P+  T TALI  + K+   + A 
Sbjct: 546 CAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKAC 605

Query: 383 ELWERMRENK--------WPMD--------FILYNTLLNMCADIGLVEEAERLFEDMKLS 426
           +++ RMR N         + +D           Y  L++       V+EA  L + M + 
Sbjct: 606 QIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVE 665

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
             C+P++  Y A+++ +   G +D A  +F +MSE G   NV   + LI  L K +R+D 
Sbjct: 666 G-CEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDL 724

Query: 487 LVRVFGVSIDRGVKPD 502
            ++V    ++    P+
Sbjct: 725 ALKVLSRMLENSCAPN 740



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 155/345 (44%), Gaps = 23/345 (6%)

Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS 261
           +F+    +  EM+S     D  TYS +I      +  D A   FE M    ++PD  TY+
Sbjct: 460 KFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYT 519

Query: 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
            ++D + K G +++    ++  V  G  P+ + ++ L   + ++        + + M S 
Sbjct: 520 ILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSE 579

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK----------------TL 365
           G  PN+V Y  L++   K+G+   A  ++  M  +   PD                  T 
Sbjct: 580 GCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTY 639

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
            AL+    KA   K+A +L + M       + I+Y+ L++    +G ++EA+ +F  M  
Sbjct: 640 GALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSE 699

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
             Y  P+ Y+Y+++++       +D A+++   M E   A NV+  T +I  L K  + D
Sbjct: 700 RGY-GPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTD 758

Query: 486 DLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQ 530
           +  R+  +  ++G  P+      +++  ++ +     GKV  CL+
Sbjct: 759 EAYRLMSMMEEKGCHPN------VVTYTAMIDGFGKAGKVDKCLE 797



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 130/300 (43%), Gaps = 20/300 (6%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
            + Y   + +    R+     +L   M+S     + +TY+ +I    +    ++A + + 
Sbjct: 550 VVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYA 609

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
           RM     +PD   Y  I D     G + +              P+   +  L     ++ 
Sbjct: 610 RMRGNADIPDVDMYFKIDD-----GNIRD--------------PNIFTYGALVDGLCKAH 650

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
                R +L  M   G +PN +VY+ L++   K GK   A+ +F +M E G  P+  T +
Sbjct: 651 KVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYS 710

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
           +LI    K +    AL++  RM EN    + I+Y  +++    +G  +EA RL   M+  
Sbjct: 711 SLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMME-E 769

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
             C P+  +YTAM++ +G  G VD  +EL  +M   G A N +    LI     A  +DD
Sbjct: 770 KGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDD 829



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 78/333 (23%), Positives = 144/333 (43%), Gaps = 20/333 (6%)

Query: 177 IKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCN 236
           I+  N+F      Y   +  L    + +    L + M     E ++I Y  +I    +  
Sbjct: 631 IRDPNIFT-----YGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVG 685

Query: 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS 296
             DEA   F +M + G  P+  TYS+++D   K  +++  L +  R + +   P+ I ++
Sbjct: 686 KLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYT 745

Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356
            +     + G  D    ++  M+  G  PN+V Y  +++  GKAGK      L  +M   
Sbjct: 746 EMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAK 805

Query: 357 GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL-----NMCADIG 411
           G  P+  T   LI     A    DA +L + M++  WP     Y  ++          +G
Sbjct: 806 GCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLG 865

Query: 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG--VAINVM 469
           L++E   + E++ +     P   +Y  +++ +   G ++ A+EL +EMS      A +  
Sbjct: 866 LLDE---IAENVAV-----PIIPAYRILIDSFCKAGRLELALELHKEMSSCTSYSAADKD 917

Query: 470 GCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
             + LI+ L  A ++D    ++   I RG  P+
Sbjct: 918 LYSSLIESLSLASKVDKAFELYADMIKRGGIPE 950



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 87/439 (19%), Positives = 166/439 (37%), Gaps = 81/439 (18%)

Query: 139 EAFLRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLR 198
           + FLR   E  ++    + L ++ + +   K   FF W   Q  +      Y+  ++ L 
Sbjct: 117 QKFLRQFREKLNETLVVDVLSLVKNPELGVK---FFIWAGRQIGYGHTGPVYHALLEVLG 173

Query: 199 FGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEV 258
            G   ++ EQ   E+   + E+     + +I    R  L++ A+E   R+   G  P  +
Sbjct: 174 CGGNDRVPEQFLREIRDEDKEILGKLLNVLIRKCCRNGLWNVALEELGRLKDLGYKPSRL 233

Query: 259 TYSAILDVY-----------------------------------AKSGKVEEVLSLYERG 283
           TY+A++ V+                                    K+G+  E L+L E+ 
Sbjct: 234 TYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAGRWREALALIEK- 292

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
               +K D + ++ +     E+  ++     L  M+S    PN+V Y  LL    +  + 
Sbjct: 293 --EEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQL 350

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
           G  + +   M+  G  P  +   +LI  Y ++     A +L ++M +      +++YN L
Sbjct: 351 GRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNIL 410

Query: 404 L-NMCAD-----IGLVEEAERLFEDM---------------------------------- 423
           +  +C +     + ++E AE+ + +M                                  
Sbjct: 411 IGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIRE 470

Query: 424 KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483
            +S    PD  +Y+ ++ +  +   VDNA  LFEEM    V  +V   T LI    K   
Sbjct: 471 MMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGL 530

Query: 484 IDDLVRVFGVSIDRGVKPD 502
           +    + F   +  G  P+
Sbjct: 531 LQQARKWFDEMVRDGCAPN 549


>gi|226509112|ref|NP_001141010.1| uncharacterized protein LOC100273089 [Zea mays]
 gi|194702156|gb|ACF85162.1| unknown [Zea mays]
 gi|413937351|gb|AFW71902.1| hypothetical protein ZEAMMB73_497690 [Zea mays]
          Length = 567

 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 147/300 (49%), Gaps = 3/300 (1%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D +TY+ ++    + + + +A++  + M+  G  PD VTY+ +L+   + G+VE+ +   
Sbjct: 200 DVVTYTILLEATCKRSGYKQAMKLLDEMHDKGCAPDIVTYNVVLNGICQEGRVEDAMEFL 259

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
           +   + G +P+ ++++++ K    +  ++    +++EM   G  PN+V +N L+  + + 
Sbjct: 260 KNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRR 319

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G    A  + ++M + G TP+  +   L+  + K +    A+E  E M       D + Y
Sbjct: 320 GLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELMVSRGCYPDIVSY 379

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           NTLL      G V+ A  L   +K    C P   SY  +++     G    A+EL +EM+
Sbjct: 380 NTLLTALCRNGEVDVAIELLHQLK-DKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMT 438

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSE 520
             G+  +++  + +   L +  RI++ VR F    D G++P   L   +L  + LC+  E
Sbjct: 439 SKGLQPDIITYSTIASGLCREDRIEEAVRTFCKVQDMGIRPTAALYNAIL--LGLCKRRE 496



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 143/297 (48%), Gaps = 12/297 (4%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           F   + S    P  T+ YN+ +K L    +++  E+L  EM       + +T++ +I+  
Sbjct: 258 FLKNLPSYGCEP-NTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFL 316

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            R  L + A+E  E+M + G  P+ ++Y+ +L  + K  K+ + +   E  V+ G  PD 
Sbjct: 317 CRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELMVSRGCYPDI 376

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           ++++ L      +G+ D    +L ++K  G  P L+ YNT+++ + KAGK   A  L DE
Sbjct: 377 VSYNTLLTALCRNGEVDVAIELLHQLKDKGCSPVLISYNTVIDGLTKAGKTKEALELLDE 436

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M   GL PD  T + +     +    ++A+  + ++++        LYN +L     +GL
Sbjct: 437 MTSKGLQPDIITYSTIASGLCREDRIEEAVRTFCKVQDMGIRPTAALYNAIL-----LGL 491

Query: 413 VEEAER-----LFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
            +  E      LF  M +S  C P+  +YT ++      G V  A ELF ++   GV
Sbjct: 492 CKRRETHNAIDLFAYM-ISSGCMPNESTYTILVEGLAYEGLVKEARELFAQLCSRGV 547



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 95/390 (24%), Positives = 168/390 (43%), Gaps = 12/390 (3%)

Query: 114 TYSYNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTRENALLILNSLKFWQKSYFF 173
            Y+YN  +R L    R  N     E+ F R    +P   T    L        ++++   
Sbjct: 166 AYTYNTLIRGLCGRGRTSNALAVLEDMFRRGC--LPDVVTYTILLEATCKRSGYKQAMKL 223

Query: 174 FNWIKSQNLFPMETIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            + +  +   P + + YNV +  + + GR    +E L N + S   E + ++Y+ ++   
Sbjct: 224 LDEMHDKGCAP-DIVTYNVVLNGICQEGRVEDAMEFLKN-LPSYGCEPNTVSYNIVLKGL 281

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
                +++A +  E M   G  P+ VT++ ++    + G VE  + + E+    G  P+ 
Sbjct: 282 FTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNS 341

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           ++++ L   F +          ++ M S G  P++V YNTLL A+ + G+  +A  L  +
Sbjct: 342 LSYNPLLHAFCKQKKIHKAMEFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIELLHQ 401

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           + + G +P   +   +I    KA   K+ALEL + M       D I Y+T+ +       
Sbjct: 402 LKDKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMTSKGLQPDIITYSTIASGLCREDR 461

Query: 413 VEEAERLF---EDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVM 469
           +EEA R F   +DM +    +P    Y A+L          NAI+LF  M   G   N  
Sbjct: 462 IEEAVRTFCKVQDMGI----RPTAALYNAILLGLCKRRETHNAIDLFAYMISSGCMPNES 517

Query: 470 GCTCLIQCLGKARRIDDLVRVFGVSIDRGV 499
             T L++ L     + +   +F     RGV
Sbjct: 518 TYTILVEGLAYEGLVKEARELFAQLCSRGV 547



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/317 (21%), Positives = 141/317 (44%), Gaps = 5/317 (1%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
           TI    T K   + +  +L++++ ++  + +I    +TY+ ++    +    ++A+E+ +
Sbjct: 205 TILLEATCKRSGYKQAMKLLDEMHDKGCAPDI----VTYNVVLNGICQEGRVEDAMEFLK 260

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
            +   G  P+ V+Y+ +L     + + E+   L E     G  P+ + F++L       G
Sbjct: 261 NLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRG 320

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
             +    VL++M   G  PN + YN LL A  K  K   A    + MV  G  PD  +  
Sbjct: 321 LVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELMVSRGCYPDIVSYN 380

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
            L+    +      A+EL  ++++       I YNT+++     G  +EA  L ++M  S
Sbjct: 381 TLLTALCRNGEVDVAIELLHQLKDKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMT-S 439

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
              +PD  +Y+ + +       ++ A+  F ++ ++G+         ++  L K R   +
Sbjct: 440 KGLQPDIITYSTIASGLCREDRIEEAVRTFCKVQDMGIRPTAALYNAILLGLCKRRETHN 499

Query: 487 LVRVFGVSIDRGVKPDD 503
            + +F   I  G  P++
Sbjct: 500 AIDLFAYMISSGCMPNE 516



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 109/248 (43%), Gaps = 3/248 (1%)

Query: 255 PDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYV 314
           PD  TY+ ++      G+    L++ E     G  PD + +++L +   +   Y     +
Sbjct: 164 PDAYTYNTLIRGLCGRGRTSNALAVLEDMFRRGCLPDVVTYTILLEATCKRSGYKQAMKL 223

Query: 315 LQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK-IYG 373
           L EM   G  P++V YN +L  + + G+   A      +   G  P+  +   ++K ++ 
Sbjct: 224 LDEMHDKGCAPDIVTYNVVLNGICQEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFT 283

Query: 374 KARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDN 433
             RW +DA +L E M     P + + +N L++     GLVE A  + E M     C P++
Sbjct: 284 AERW-EDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYG-CTPNS 341

Query: 434 YSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGV 493
            SY  +L+ +     +  A+E  E M   G   +++    L+  L +   +D  + +   
Sbjct: 342 LSYNPLLHAFCKQKKIHKAMEFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIELLHQ 401

Query: 494 SIDRGVKP 501
             D+G  P
Sbjct: 402 LKDKGCSP 409



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 77/337 (22%), Positives = 137/337 (40%), Gaps = 53/337 (15%)

Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
           +A++     SG+  +      R V +   PD + ++ +   +  +G  D  R ++ +M  
Sbjct: 108 AALIKKLCASGRTADA-----RRVLAASGPDVMVYNAMVAGYCGAGQLDAARRLVADMP- 161

Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380
             V+P+   YNTL+  +   G+   A ++ ++M   G  PD  T T L++   K    K 
Sbjct: 162 --VEPDAYTYNTLIRGLCGRGRTSNALAVLEDMFRRGCLPDVVTYTILLEATCKRSGYKQ 219

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLV--------------------------- 413
           A++L + M +     D + YN +LN     G V                           
Sbjct: 220 AMKLLDEMHDKGCAPDIVTYNVVLNGICQEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLK 279

Query: 414 --------EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
                   E+AE+L E+M     C P+  ++  +++     G V+ A+E+ E+M + G  
Sbjct: 280 GLFTAERWEDAEKLMEEMA-HKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCT 338

Query: 466 INVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKV 525
            N +    L+    K ++I   +    + + RG  PD      LL+  +LC   E V   
Sbjct: 339 PNSLSYNPLLHAFCKQKKIHKAMEFVELMVSRGCYPDIVSYNTLLT--ALCRNGE-VDVA 395

Query: 526 ITCLQQ-----ANPKLVAFLNLIEDNSTGFENIKEEF 557
           I  L Q      +P L+++ N + D  T     KE  
Sbjct: 396 IELLHQLKDKGCSPVLISY-NTVIDGLTKAGKTKEAL 431


>gi|42408237|dbj|BAD09394.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|215678545|dbj|BAG92200.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 624

 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/368 (22%), Positives = 167/368 (45%), Gaps = 5/368 (1%)

Query: 139 EAFLRAITEIPHQPTRENALLILNSL---KFWQKSYFFFNWIKS-QNLFPMETIFYNVTM 194
           +  LR + E+  +P   +  ++L  L   K  Q++    + +   +   P++ + Y   +
Sbjct: 155 DIVLRRMPELGCKPDLFSYTILLKGLCDDKTSQQALDLLHIMADHKGRCPLDVVAYTTVI 214

Query: 195 KSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLM 254
             L    Q      L + M+      D +TYS+II+   +    D+A + F RM K G+M
Sbjct: 215 NGLLREGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMDKATQVFTRMVKNGVM 274

Query: 255 PDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYV 314
           PD + Y++++  Y  SGK +E + ++++    G +PD + ++ L     ++G     R +
Sbjct: 275 PDCIMYTSLVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKI 334

Query: 315 LQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK 374
              +   G +P+   Y TLL      G       L D M++ G+         ++  Y K
Sbjct: 335 FDSLVKRGHKPDSTTYGTLLHGYATEGALVEMHDLLDLMMKKGMQLGHHIFNMIMGAYAK 394

Query: 375 ARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNY 434
                +AL ++  MR+     D + Y T+L++    G V++A   F  +K S+   P+  
Sbjct: 395 HNKVDEALLVFSNMRQQGLNPDIVNYGTVLDILCTAGRVDDALSQFNSLK-SEGLAPNIV 453

Query: 435 SYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVS 494
            +T +++   +    D   EL  EM + G+ ++ +    ++  L K  R+ +   +F + 
Sbjct: 454 VFTTLIHGLCTCDKWDKVEELAFEMIDRGICLDTIFFNAIMGNLCKKGRVIEAKNLFDLM 513

Query: 495 IDRGVKPD 502
           +  G++P+
Sbjct: 514 VRIGIEPN 521



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 116/254 (45%), Gaps = 1/254 (0%)

Query: 206 IEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
           +  L + M+   ++L +  ++ I+    + N  DEA+  F  M + GL PD V Y  +LD
Sbjct: 366 MHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLD 425

Query: 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325
           +   +G+V++ LS +    + G  P+ + F+ L         +D +  +  EM   G+  
Sbjct: 426 ILCTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCTCDKWDKVEELAFEMIDRGICL 485

Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
           + + +N ++  + K G+   A++LFD MV  G+ P+  T   LI  Y       +A++L 
Sbjct: 486 DTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDGYCLDGKMDEAMKLL 545

Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445
             M  N      + YNT++N  +  G +E+   L  +M       P   +Y  +L     
Sbjct: 546 GVMVFNGVKPSDVTYNTIINGYSQNGRIEDGLTLLREMD-GKGVNPGIVTYEMLLQGLFQ 604

Query: 446 GGNVDNAIELFEEM 459
            G    A EL+  M
Sbjct: 605 AGRTVAAKELYLRM 618



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 100/443 (22%), Positives = 185/443 (41%), Gaps = 58/443 (13%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           TY  +I C +R    D A     R+  TGL    + +S +L       +  + + +  R 
Sbjct: 101 TYGIVIGCCRRLGRLDLAFATVGRVITTGLRMSPILFSPLLKGLCDRRRTSDAMDIVLRR 160

Query: 284 VAS-GWKPDPIAFSVLGKMFGES-------------GDYDG------------IRYVLQE 317
           +   G KPD  ++++L K   +               D+ G            I  +L+E
Sbjct: 161 MPELGCKPDLFSYTILLKGLCDDKTSQQALDLLHIMADHKGRCPLDVVAYTTVINGLLRE 220

Query: 318 ------------MKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
                       M   G  P++V Y++++ A+ K      A  +F  MV++G+ PD    
Sbjct: 221 GQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMDKATQVFTRMVKNGVMPDCIMY 280

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
           T+L+  Y  +   K+A+ ++++M  +    D + Y  L++     G   EA ++F+ +  
Sbjct: 281 TSLVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVK 340

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
             + KPD+ +Y  +L+ Y + G +    +L + M + G+ +       ++    K  ++D
Sbjct: 341 RGH-KPDSTTYGTLLHGYATEGALVEMHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVD 399

Query: 486 DLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--------PKLV 537
           + + VF     +G+ PD    G +L +  LC      G+V   L Q N        P +V
Sbjct: 400 EALLVFSNMRQQGLNPDIVNYGTVLDI--LCTA----GRVDDALSQFNSLKSEGLAPNIV 453

Query: 538 AFLNLIEDNSTGFE-NIKEEFRNVIKDTEVDARRPFCNCLI-DICRNRNLNERAHELLYL 595
            F  LI    T  + +  EE    + D  +     F N ++ ++C+   + E A  L  L
Sbjct: 454 VFTTLIHGLCTCDKWDKVEELAFEMIDRGICLDTIFFNAIMGNLCKKGRVIE-AKNLFDL 512

Query: 596 GTLYGLYP--GLHNKTLDEWSLD 616
               G+ P    +N  +D + LD
Sbjct: 513 MVRIGIEPNTNTYNTLIDGYCLD 535



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 95/182 (52%), Gaps = 1/182 (0%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           FN +KS+ L P   + +   +  L    ++  +E+LA EM+   I LD I ++ I+    
Sbjct: 440 FNSLKSEGLAP-NIVVFTTLIHGLCTCDKWDKVEELAFEMIDRGICLDTIFFNAIMGNLC 498

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
           +     EA   F+ M + G+ P+  TY+ ++D Y   GK++E + L    V +G KP  +
Sbjct: 499 KKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDGYCLDGKMDEAMKLLGVMVFNGVKPSDV 558

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
            ++ +   + ++G  +    +L+EM   GV P +V Y  LL+ + +AG+   A+ L+  M
Sbjct: 559 TYNTIINGYSQNGRIEDGLTLLREMDGKGVNPGIVTYEMLLQGLFQAGRTVAAKELYLRM 618

Query: 354 VE 355
           ++
Sbjct: 619 IK 620



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 126/276 (45%), Gaps = 7/276 (2%)

Query: 241 AIEWFERMYKTGLM---PDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS- 296
           AI  F RM + G     P+  TY  ++    + G+++   +   R + +G +  PI FS 
Sbjct: 80  AISLFNRMPRAGATSAAPNIATYGIVIGCCRRLGRLDLAFATVGRVITTGLRMSPILFSP 139

Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVE- 355
           +L  +       D +  VL+ M  LG +P+L  Y  LL+ +        A  L   M + 
Sbjct: 140 LLKGLCDRRRTSDAMDIVLRRMPELGCKPDLFSYTILLKGLCDDKTSQQALDLLHIMADH 199

Query: 356 SGLTP-DEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
            G  P D    T +I    +      A  L++ M +     D + Y+++++  +    ++
Sbjct: 200 KGRCPLDVVAYTTVINGLLREGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMD 259

Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
           +A ++F  M + +   PD   YT++++ Y S G    AI +F++M   GV  +V+  T L
Sbjct: 260 KATQVFTRM-VKNGVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTAL 318

Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
           +  L K  +  +  ++F   + RG KPD    G LL
Sbjct: 319 MDYLCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLL 354



 Score = 42.0 bits (97), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 53/238 (22%), Positives = 97/238 (40%), Gaps = 8/238 (3%)

Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT---PDEKTLTALIK 370
           V   +   G + ++   N  L  + +A  P +A SLF+ M  +G T   P+  T   +I 
Sbjct: 49  VFDRLLKRGDRASIFDLNRALSDVARA-SPAVAISLFNRMPRAGATSAAPNIATYGIVIG 107

Query: 371 IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCK 430
              +      A     R+      M  IL++ LL    D     +A  +         CK
Sbjct: 108 CCRRLGRLDLAFATVGRVITTGLRMSPILFSPLLKGLCDRRRTSDAMDIVLRRMPELGCK 167

Query: 431 PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG--VAINVMGCTCLIQCLGKARRIDDLV 488
           PD +SYT +L           A++L   M++      ++V+  T +I  L +  ++D   
Sbjct: 168 PDLFSYTILLKGLCDDKTSQQALDLLHIMADHKGRCPLDVVAYTTVINGLLREGQLDKAY 227

Query: 489 RVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAFLNLIE 544
            +F   +DRG  PD      ++S +S  +  +   +V T + +    P  + + +L+ 
Sbjct: 228 SLFDAMLDRGPSPDVVTYSSIISALSKTQAMDKATQVFTRMVKNGVMPDCIMYTSLVH 285


>gi|413948663|gb|AFW81312.1| hypothetical protein ZEAMMB73_082399 [Zea mays]
          Length = 798

 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 140/294 (47%), Gaps = 1/294 (0%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L +EM+      D +TYS++I    +    ++A    + M+  G+MP+  TY+ ++  Y 
Sbjct: 225 LFDEMIGQGFPPDVVTYSSLIDGLCKAQAMNKAEAILQHMFDKGVMPNTRTYNIMIRGYC 284

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
             G++EE + L ++   SG +PD + + +L + + + G     R V   M   G +PN  
Sbjct: 285 SLGQLEEAVRLLKKMSGSGLQPDVVTYILLIQYYCKIGRCAEARSVFDSMVRKGQKPNST 344

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
           +Y+ LL      G     R L D M+  G+  + +    LI  Y K      A+  +  M
Sbjct: 345 IYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEM 404

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
           R+N    D + Y+T++++   IG VE+A   F  M +S+   P+  S+T++++   S G 
Sbjct: 405 RQNGLRPDVVSYSTVIHILCKIGRVEDAVYHFNQM-VSEGLSPNIISFTSLIHGLCSIGE 463

Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
                EL  EM   G+  + +    ++  L K  R+ +    F + I  GVKP+
Sbjct: 464 WKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPN 517



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 143/283 (50%), Gaps = 7/283 (2%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           ++YSTII    +    D+A   F+ M   G  PD VTYS+++D   K+  + +  ++ + 
Sbjct: 204 VSYSTIIDGFFKEGEVDKAYFLFDEMIGQGFPPDVVTYSSLIDGLCKAQAMNKAEAILQH 263

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
               G  P+   ++++ + +   G  +    +L++M   G+QP++V Y  L++   K G+
Sbjct: 264 MFDKGVMPNTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYILLIQYYCKIGR 323

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
              ARS+FD MV  G  P+      L+  Y       D  +L + M  +  P +   +N 
Sbjct: 324 CAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNI 383

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
           L+   A  G V++A   F +M+  +  +PD  SY+ +++I    G V++A+  F +M   
Sbjct: 384 LICAYAKHGAVDKAMTAFTEMR-QNGLRPDVVSYSTVIHILCKIGRVEDAVYHFNQMVSE 442

Query: 463 GVAINVMGCTCLIQCL---GKARRIDDLVRVFGVSIDRGVKPD 502
           G++ N++  T LI  L   G+ +++++L       I+RG+ PD
Sbjct: 443 GLSPNIISFTSLIHGLCSIGEWKKVEELAFEM---INRGIHPD 482



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/334 (24%), Positives = 151/334 (45%), Gaps = 2/334 (0%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           K+YF F+ +  Q  FP + + Y+  +  L   +     E +   M    +  +  TY+ +
Sbjct: 221 KAYFLFDEMIGQG-FPPDVVTYSSLIDGLCKAQAMNKAEAILQHMFDKGVMPNTRTYNIM 279

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
           I         +EA+   ++M  +GL PD VTY  ++  Y K G+  E  S+++  V  G 
Sbjct: 280 IRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYILLIQYYCKIGRCAEARSVFDSMVRKGQ 339

Query: 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348
           KP+   + +L   +   G    +R +L  M   G+      +N L+ A  K G    A +
Sbjct: 340 KPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMT 399

Query: 349 LFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCA 408
            F EM ++GL PD  + + +I I  K    +DA+  + +M       + I + +L++   
Sbjct: 400 AFTEMRQNGLRPDVVSYSTVIHILCKIGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLC 459

Query: 409 DIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINV 468
            IG  ++ E L  +M ++    PD      +++     G V  A + F+ +  +GV  NV
Sbjct: 460 SIGEWKKVEELAFEM-INRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPNV 518

Query: 469 MGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           +    LI       ++D+ ++ F   +  G++PD
Sbjct: 519 VSYNTLIDGYCFVGKMDESIKQFDRMVSIGLRPD 552



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 84/332 (25%), Positives = 141/332 (42%), Gaps = 38/332 (11%)

Query: 206 IEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
           +  L + M+ + I  ++  ++ +I    +    D+A+  F  M + GL PD V+YS ++ 
Sbjct: 362 VRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIH 421

Query: 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS----- 320
           +  K G+VE+ +  + + V+ G  P+ I+F+ L       G++  +  +  EM +     
Sbjct: 422 ILCKIGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHP 481

Query: 321 ------------------------------LGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
                                         +GV+PN+V YNTL++     GK   +   F
Sbjct: 482 DAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPNVVSYNTLIDGYCFVGKMDESIKQF 541

Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
           D MV  GL PD  T  AL+  Y K    +DAL L+  M         I  N +L+     
Sbjct: 542 DRMVSIGLRPDSWTYNALLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIILHGLFQA 601

Query: 411 GLVEEAERLFEDMKLSDYCKPDNY-SYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVM 469
           G +  A  L+  MK+ D        +Y  +L        VD A+ +FE++      ++V 
Sbjct: 602 GRIVAARELY--MKMVDRGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVW 659

Query: 470 GCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
               +I  L K  RID+   +F   + RG  P
Sbjct: 660 TFNIVINALLKVGRIDEAKSLFSAMVLRGPVP 691



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 72/321 (22%), Positives = 139/321 (43%), Gaps = 38/321 (11%)

Query: 220 LDNITYSTIITCAKRCNLFDEAIEW-FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS 278
           + N+T + +I         D+A++  F RM + G  PD  +Y+A++       K +E L 
Sbjct: 127 VQNVTLNQLIKGLCDGKRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALE 186

Query: 279 LYERGVASGW---KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLE 335
           L     A G     P+ +++S +   F + G+ D   ++  EM   G  P++V Y++L++
Sbjct: 187 LLLHMTADGGYNCSPNVVSYSTIIDGFFKEGEVDKAYFLFDEMIGQGFPPDVVTYSSLID 246

Query: 336 AMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPM 395
            + KA     A ++   M + G+ P+ +T   +I+ Y      ++A+ L ++M  +    
Sbjct: 247 GLCKAQAMNKAEAILQHMFDKGVMPNTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQP 306

Query: 396 DFILYNTLLNMCADIGLVEEAERLFE---------------------------------- 421
           D + Y  L+     IG   EA  +F+                                  
Sbjct: 307 DVVTYILLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLL 366

Query: 422 DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
           D+ + D    ++ ++  ++  Y   G VD A+  F EM + G+  +V+  + +I  L K 
Sbjct: 367 DLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKI 426

Query: 482 RRIDDLVRVFGVSIDRGVKPD 502
            R++D V  F   +  G+ P+
Sbjct: 427 GRVEDAVYHFNQMVSEGLSPN 447



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 149/327 (45%), Gaps = 42/327 (12%)

Query: 161 LNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIE 219
           L S+  W+K       + ++ + P + IF N  M +L + GR  +  +   + ++   ++
Sbjct: 458 LCSIGEWKKVEELAFEMINRGIHP-DAIFMNTIMDNLCKEGRVVE-AQDFFDMVIHIGVK 515

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
            + ++Y+T+I         DE+I+ F+RM   GL PD  TY+A+L+ Y K+G+VE+ L+L
Sbjct: 516 PNVVSYNTLIDGYCFVGKMDESIKQFDRMVSIGLRPDSWTYNALLNGYFKNGRVEDALAL 575

Query: 280 YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
           Y                                   +EM    V+   +  N +L  + +
Sbjct: 576 Y-----------------------------------REMFRKDVKFCAITSNIILHGLFQ 600

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
           AG+   AR L+ +MV+ G     +T   ++    +     +AL ++E +R  ++ +D   
Sbjct: 601 AGRIVAARELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVWT 660

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           +N ++N    +G ++EA+ LF  M L     P   +Y+ M+      G ++ + +LF  M
Sbjct: 661 FNIVINALLKVGRIDEAKSLFSAMVLRGPV-PHVITYSLMIKSRIEEGLLEESDDLFLSM 719

Query: 460 SELGVAINVMGCTCLIQCL---GKARR 483
            + G A +      +I+ L   G  RR
Sbjct: 720 EKNGCAADSHMLNVIIRRLLEKGDVRR 746



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 68/144 (47%), Gaps = 3/144 (2%)

Query: 364 TLTALIKIYGKARWAKDALEL-WERMRENKWPMDFILYNTLL-NMCADIGLVEEAERLFE 421
           TL  LIK     +   DA+++ + RM E  +  D   YN L+  +C +    E  E L  
Sbjct: 131 TLNQLIKGLCDGKRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLLH 190

Query: 422 DMKLSDY-CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK 480
                 Y C P+  SY+ +++ +   G VD A  LF+EM   G   +V+  + LI  L K
Sbjct: 191 MTADGGYNCSPNVVSYSTIIDGFFKEGEVDKAYFLFDEMIGQGFPPDVVTYSSLIDGLCK 250

Query: 481 ARRIDDLVRVFGVSIDRGVKPDDR 504
           A+ ++    +     D+GV P+ R
Sbjct: 251 AQAMNKAEAILQHMFDKGVMPNTR 274



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 88/208 (42%), Gaps = 4/208 (1%)

Query: 191 NVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIIT--CAKRCNLFDEAIEWFERM 248
           N+ +  L    +     +L  +MV    +L   TY+T++   C   C   DEA+  FE +
Sbjct: 592 NIILHGLFQAGRIVAARELYMKMVDRGTQLRIETYNTVLGGLCENSC--VDEALRMFEDL 649

Query: 249 YKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY 308
                  D  T++ +++   K G+++E  SL+   V  G  P  I +S++ K   E G  
Sbjct: 650 RSKEFELDVWTFNIVINALLKVGRIDEAKSLFSAMVLRGPVPHVITYSLMIKSRIEEGLL 709

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
           +    +   M+  G   +  + N ++  + + G    A +   ++ E   + +  T   L
Sbjct: 710 EESDDLFLSMEKNGCAADSHMLNVIIRRLLEKGDVRRAGTYLTKIDEKNFSVEASTAALL 769

Query: 369 IKIYGKARWAKDALELWERMRENKWPMD 396
           I I  + ++ K+   L E+      P D
Sbjct: 770 IPIVSEKKYQKEVKFLPEKYHSFMQPRD 797


>gi|414874052|tpg|DAA52609.1| TPA: hypothetical protein ZEAMMB73_367214 [Zea mays]
          Length = 716

 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/360 (24%), Positives = 156/360 (43%), Gaps = 74/360 (20%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGL------------------------------ 253
           TY+ ++ C  R +  + A+ +F ++ +TGL                              
Sbjct: 117 TYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEALDILLHR 176

Query: 254 ------MPDEVTYSAILDVY---AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
                 +PD  +YS +L       KSG+ +++L +   G A    PD +A++ +   F +
Sbjct: 177 TPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAV-CSPDVVAYTTVIDCFFK 235

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
            GD +    + +EM   G+ P+LV Y++++ A+ KA   G A +   +MV  G+ PD  T
Sbjct: 236 EGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMGKAEAFLRQMVNKGVLPDNWT 295

Query: 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFE--- 421
              LI  Y      K+A+ +++ MR +    D +  N L+      G ++EA  +F+   
Sbjct: 296 YNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLNMLMGSLCKYGKIKEARDVFDTMA 355

Query: 422 -------------------------------DMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
                                          D+ L D   PD Y+++ ++  Y + G +D
Sbjct: 356 MKGQNPDVFSYKIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFSVLIKAYANCGMLD 415

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
            A+ +F EM + GV  +V+  T +I  L +  ++DD +  F   ID+GV PD     CL+
Sbjct: 416 KAMIIFNEMRDHGVKPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLI 475



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 152/337 (45%), Gaps = 3/337 (0%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  EMV   I  D +TYS+++    +     +A  +  +M   G++PD  TY+ ++  Y+
Sbjct: 245 LFKEMVQRGIPPDLVTYSSVVHALCKARAMGKAEAFLRQMVNKGVLPDNWTYNNLIYGYS 304

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
            +G+ +E + +++        PD +  ++L     + G     R V   M   G  P++ 
Sbjct: 305 STGQWKEAVRVFKEMRRHSILPDVVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVF 364

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            Y  +L      G       LFD M+  G+ PD  T + LIK Y        A+ ++  M
Sbjct: 365 SYKIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFSVLIKAYANCGMLDKAMIIFNEM 424

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
           R++    D + Y T++     IG +++A   F  M +     PD Y+Y  ++  + + G+
Sbjct: 425 RDHGVKPDVVTYTTVIAALCRIGKMDDAMEKFNQM-IDQGVAPDKYAYHCLIQGFCTHGS 483

Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGC 508
           +  A EL  E+   G+ ++++  + +I  L K  RI D   +F ++++ G  PD  +   
Sbjct: 484 LLKAKELILEIMNNGMRLDIVFFSSIINNLCKLGRIMDAQNIFDLTVNVGQHPDAVVYSM 543

Query: 509 LLSVVSLCETSEDVGKVITCLQQAN--PKLVAFLNLI 543
           L+    L    E   +V   +  A   P +V +  L+
Sbjct: 544 LMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYGTLV 580



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/391 (22%), Positives = 175/391 (44%), Gaps = 40/391 (10%)

Query: 139 EAFLRAITE---IPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMK 195
           EAFLR +     +P   T  N +   +S   W+++   F  ++  ++ P + +  N+ M 
Sbjct: 278 EAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILP-DVVTLNMLMG 336

Query: 196 SL-RFGR---------------------QFQLI-------------EQLANEMVSNEIEL 220
           SL ++G+                      ++++               L + M+ + I  
Sbjct: 337 SLCKYGKIKEARDVFDTMAMKGQNPDVFSYKIMLNGYATKGCLVDMTDLFDLMLGDGIAP 396

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D  T+S +I     C + D+A+  F  M   G+ PD VTY+ ++    + GK+++ +  +
Sbjct: 397 DIYTFSVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYTTVIAALCRIGKMDDAMEKF 456

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
            + +  G  PD  A+  L + F   G     + ++ E+ + G++ ++V +++++  + K 
Sbjct: 457 NQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELILEIMNNGMRLDIVFFSSIINNLCKL 516

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G+   A+++FD  V  G  PD    + L+  Y      + AL +++ M       + ++Y
Sbjct: 517 GRIMDAQNIFDLTVNVGQHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVY 576

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
            TL+N    IG ++E   LF +M L    KP    Y  +++     G    A   F EM+
Sbjct: 577 GTLVNGYCKIGRIDEGLSLFREM-LQKGIKPSTILYNIIIDGLFVAGRTVPAKVKFHEMT 635

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           E G+AIN      +++   K R  D+ + +F
Sbjct: 636 ESGIAINKCTYNIVLRGFFKNRCFDEAIFLF 666



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 128/256 (50%), Gaps = 1/256 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D + Y+T+I C  +    ++A + F+ M + G+ PD VTYS+++    K+  + +  +  
Sbjct: 222 DVVAYTTVIDCFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMGKAEAFL 281

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
            + V  G  PD   ++ L   +  +G +     V +EM+   + P++V  N L+ ++ K 
Sbjct: 282 RQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLNMLMGSLCKY 341

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           GK   AR +FD M   G  PD  +   ++  Y       D  +L++ M  +    D   +
Sbjct: 342 GKIKEARDVFDTMAMKGQNPDVFSYKIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTF 401

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           + L+   A+ G++++A  +F +M+     KPD  +YT ++      G +D+A+E F +M 
Sbjct: 402 SVLIKAYANCGMLDKAMIIFNEMR-DHGVKPDVVTYTTVIAALCRIGKMDDAMEKFNQMI 460

Query: 461 ELGVAINVMGCTCLIQ 476
           + GVA +     CLIQ
Sbjct: 461 DQGVAPDKYAYHCLIQ 476



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 76/357 (21%), Positives = 157/357 (43%), Gaps = 36/357 (10%)

Query: 180 QNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFD 239
           Q   P + + Y+  + +L   R     E    +MV+  +  DN TY+ +I        + 
Sbjct: 251 QRGIPPDLVTYSSVVHALCKARAMGKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWK 310

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           EA+  F+ M +  ++PD VT + ++    K GK++E   +++     G  PD  ++ ++ 
Sbjct: 311 EAVRVFKEMRRHSILPDVVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYKIML 370

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
             +   G    +  +   M   G+ P++  ++ L++A    G    A  +F+EM + G+ 
Sbjct: 371 NGYATKGCLVDMTDLFDLMLGDGIAPDIYTFSVLIKAYANCGMLDKAMIIFNEMRDHGVK 430

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRE----------------------------- 390
           PD  T T +I    +     DA+E + +M +                             
Sbjct: 431 PDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKEL 490

Query: 391 ------NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYG 444
                 N   +D + +++++N    +G + +A+ +F D+ ++    PD   Y+ +++ Y 
Sbjct: 491 ILEIMNNGMRLDIVFFSSIINNLCKLGRIMDAQNIF-DLTVNVGQHPDAVVYSMLMDGYC 549

Query: 445 SGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
             G ++ A+ +F+ M   G+  NV+    L+    K  RID+ + +F   + +G+KP
Sbjct: 550 LVGKMEKALRVFDAMVSAGIEPNVVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKP 606



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 129/253 (50%), Gaps = 1/253 (0%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           FN +  Q + P +  ++ +       G   +  ++L  E+++N + LD + +S+II    
Sbjct: 456 FNQMIDQGVAPDKYAYHCLIQGFCTHGSLLK-AKELILEIMNNGMRLDIVFFSSIINNLC 514

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
           +     +A   F+     G  PD V YS ++D Y   GK+E+ L +++  V++G +P+ +
Sbjct: 515 KLGRIMDAQNIFDLTVNVGQHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVV 574

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
            +  L   + + G  D    + +EM   G++P+ ++YN +++ +  AG+   A+  F EM
Sbjct: 575 VYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFVAGRTVPAKVKFHEM 634

Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
            ESG+  ++ T   +++ + K R   +A+ L++ +R     +D I  NT++        V
Sbjct: 635 TESGIAINKCTYNIVLRGFFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRV 694

Query: 414 EEAERLFEDMKLS 426
           EEA+ LF  +  S
Sbjct: 695 EEAKDLFASISRS 707



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 91/183 (49%), Gaps = 2/183 (1%)

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382
           + P    Y  L++   +A +P LA + F +++ +GL  D      L+K + +A+   +AL
Sbjct: 111 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEAL 170

Query: 383 E-LWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM-KLSDYCKPDNYSYTAML 440
           + L  R  E     D   Y+ LL    D G   +A+ L   M +    C PD  +YT ++
Sbjct: 171 DILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYTTVI 230

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
           + +   G+V+ A +LF+EM + G+  +++  + ++  L KAR +          +++GV 
Sbjct: 231 DCFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMGKAEAFLRQMVNKGVL 290

Query: 501 PDD 503
           PD+
Sbjct: 291 PDN 293



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/192 (19%), Positives = 91/192 (47%), Gaps = 8/192 (4%)

Query: 177 IKSQNLFPM--------ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           + +QN+F +        + + Y++ M       + +   ++ + MVS  IE + + Y T+
Sbjct: 520 MDAQNIFDLTVNVGQHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYGTL 579

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
           +    +    DE +  F  M + G+ P  + Y+ I+D    +G+       +     SG 
Sbjct: 580 VNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFVAGRTVPAKVKFHEMTESGI 639

Query: 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348
             +   ++++ + F ++  +D   ++ +E++++ V+ +++  NT++  M +  +   A+ 
Sbjct: 640 AINKCTYNIVLRGFFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKD 699

Query: 349 LFDEMVESGLTP 360
           LF  +  SGL P
Sbjct: 700 LFASISRSGLVP 711


>gi|125527955|gb|EAY76069.1| hypothetical protein OsI_03997 [Oryza sativa Indica Group]
          Length = 684

 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/316 (25%), Positives = 145/316 (45%), Gaps = 8/316 (2%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
           T+      KS  FG+  ++++++  +  +  I    +TY+ II    R    D+A E+  
Sbjct: 184 TVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNI----VTYNVIINGMCREGRVDDAREFLN 239

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
           R+   G  PD V+Y+ +L     + + E+V  L+   +     P+ + F +L + F   G
Sbjct: 240 RLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGG 299

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
             +    VL++M   G   N  + N ++  + K G+   A    + M   G +PD  + T
Sbjct: 300 MVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYT 359

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
            ++K   +A   +DA EL + M     P + + +NT + +    GL+E+A  L E M   
Sbjct: 360 TVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMS-E 418

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
             C+ +  +Y A++N +   G VD+A+ELF  M       N +  T L+  L  A R+D 
Sbjct: 419 HGCEVNIVTYNALVNGFCVQGRVDSALELFYSMP---CKPNTITYTTLLTGLCNAERLDA 475

Query: 487 LVRVFGVSIDRGVKPD 502
              +    + +   P+
Sbjct: 476 AAELLAEMLQKDCAPN 491



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 91/400 (22%), Positives = 167/400 (41%), Gaps = 41/400 (10%)

Query: 141 FLRAITEIPHQPTRENALLILNSL---KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSL 197
           FL  ++    QP   +   +L  L   K W+     F  +  +N  P E  F  +     
Sbjct: 237 FLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFC 296

Query: 198 RFG---RQFQLIEQLA-------------------------------NEMVSNEIELDNI 223
           R G   R  Q++EQ++                               N M S     D I
Sbjct: 297 RGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTI 356

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           +Y+T++    R   +++A E  + M +    P+EVT++  + +  + G +E+   L E+ 
Sbjct: 357 SYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQM 416

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
              G + + + ++ L   F   G  D     L+   S+  +PN + Y TLL  +  A + 
Sbjct: 417 SEHGCEVNIVTYNALVNGFCVQGRVDS---ALELFYSMPCKPNTITYTTLLTGLCNAERL 473

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
             A  L  EM++    P+  T   L+  + +     +A+EL E+M E+    + I YNTL
Sbjct: 474 DAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTL 533

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           L+   +    EEA  L   + +S+   PD  +Y++++ +      V+ AI++F  + +LG
Sbjct: 534 LDGITNDCNSEEALELLHGL-VSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLG 592

Query: 464 VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
           +    +    ++  L K    D  +  F   +  G  P++
Sbjct: 593 MRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNE 632



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/369 (22%), Positives = 164/369 (44%), Gaps = 7/369 (1%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           F N + S    P +T+ Y   +K L   ++++ +E+L  EM+      + +T+  ++   
Sbjct: 237 FLNRLSSYGFQP-DTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFF 295

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            R  + + AI+  E+M   G   +    + +++   K G+V++         + G  PD 
Sbjct: 296 CRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDT 355

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           I+++ + K    +  ++  + +L+EM      PN V +NT +  + + G    A  L ++
Sbjct: 356 ISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQ 415

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M E G   +  T  AL+  +        ALEL+  M       + I Y TLL    +   
Sbjct: 416 MSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSM---PCKPNTITYTTLLTGLCNAER 472

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
           ++ A  L  +M   D C P+  ++  +++ +   G +D AIEL E+M E G   N++   
Sbjct: 473 LDAAAELLAEMLQKD-CAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYN 531

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ- 531
            L+  +      ++ + +    +  GV PD      ++ V+S  +  E+  K+   +Q  
Sbjct: 532 TLLDGITNDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDL 591

Query: 532 -ANPKLVAF 539
              PK V +
Sbjct: 592 GMRPKAVIY 600



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 127/284 (44%), Gaps = 4/284 (1%)

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
           +D   Y+T++    R    D A      M    + PD  TY+ I+      G+V E LSL
Sbjct: 111 VDVFAYNTLVAGYCRYGQLDAARRLIASM---PVAPDAYTYTPIIRGLCDRGRVGEALSL 167

Query: 280 YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
            +  +  G +P  + ++VL +   +S  +     VL EM++ G  PN+V YN ++  M +
Sbjct: 168 LDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCR 227

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
            G+   AR   + +   G  PD  + T ++K    A+  +D  EL+  M E     + + 
Sbjct: 228 EGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVT 287

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           ++ L+      G+VE A ++ E M     C  +      ++N     G VD+A +    M
Sbjct: 288 FDMLVRFFCRGGMVERAIQVLEQMS-GHGCAANTTLCNIVINTICKQGRVDDAFQFLNNM 346

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
              G + + +  T +++ L +A R +D   +    + +   P++
Sbjct: 347 GSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNE 390



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 98/203 (48%), Gaps = 2/203 (0%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
           TI Y   +  L    +     +L  EM+  +   + +T++ +++   +  L DEAIE  E
Sbjct: 457 TITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVE 516

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS-VLGKMFGES 305
           +M + G  P+ +TY+ +LD        EE L L    V++G  PD + +S ++G +  E 
Sbjct: 517 QMMEHGCTPNLITYNTLLDGITNDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSRED 576

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
              + I+ +   ++ LG++P  V+YN +L A+ K      A   F  MV +G  P+E T 
Sbjct: 577 RVEEAIK-MFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTY 635

Query: 366 TALIKIYGKARWAKDALELWERM 388
             LI+      + K+  +L   +
Sbjct: 636 ITLIEGLANEDFLKETRDLLREL 658



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 72/152 (47%), Gaps = 2/152 (1%)

Query: 208 QLANEMVSNEIELDNITYSTIIT-CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
           +L  +M+ +    + ITY+T++      CN  +EA+E    +   G+ PD VTYS+I+ V
Sbjct: 513 ELVEQMMEHGCTPNLITYNTLLDGITNDCN-SEEALELLHGLVSNGVSPDIVTYSSIIGV 571

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
            ++  +VEE + ++      G +P  + ++ +     +  + DG       M S G  PN
Sbjct: 572 LSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPN 631

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
            + Y TL+E +         R L  E+   G+
Sbjct: 632 ELTYITLIEGLANEDFLKETRDLLRELCSRGV 663



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 76/335 (22%), Positives = 124/335 (37%), Gaps = 48/335 (14%)

Query: 275 EVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLL 334
           E   L +R  + G  PD    + L +     G       VL+  +  G   ++  YNTL+
Sbjct: 61  EAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLV 120

Query: 335 EAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWP 394
               + G+   AR L   M    + PD  T T +I+                        
Sbjct: 121 AGYCRYGQLDAARRLIASM---PVAPDAYTYTPIIR------------------------ 153

Query: 395 MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIE 454
                      +C D G V EA  L +DM L   C+P   +YT +L           A+E
Sbjct: 154 ----------GLC-DRGRVGEALSLLDDM-LHRGCQPSVVTYTVLLEAVCKSTGFGQAME 201

Query: 455 LFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVS 514
           + +EM   G   N++    +I  + +  R+DD           G +PD      +L  + 
Sbjct: 202 VLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLC 261

Query: 515 LCETSEDVGKVITCLQQAN--PKLVAFLNLIEDNSTGFENIKEEFRNVIKDTE---VDAR 569
             +  EDV ++   + + N  P  V F  L+     G   + E    V++        A 
Sbjct: 262 AAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRG--GMVERAIQVLEQMSGHGCAAN 319

Query: 570 RPFCNCLID-ICRNRNLNERAHELLYLGTLYGLYP 603
              CN +I+ IC+   +++    L  +G+ YG  P
Sbjct: 320 TTLCNIVINTICKQGRVDDAFQFLNNMGS-YGCSP 353


>gi|449479180|ref|XP_004155527.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
           mitochondrial-like [Cucumis sativus]
          Length = 653

 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/313 (26%), Positives = 143/313 (45%), Gaps = 3/313 (0%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN  +  L      +  E++   M   +I  D +TY+ +I    +     +A+E F  M 
Sbjct: 223 YNFLVNGLVNSMFIESAEKVFEVMDGGKIVPDTVTYNIMIKGYCKAGKLQKAMEKFRDME 282

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS-VLGKMFGESGDY 308
              + PD++TY  ++         +  LSLY      G +  P ++S V+G +  +    
Sbjct: 283 MKNVKPDKITYMTLIQACYSERDFDTCLSLYLEMEERGLEIPPHSYSLVIGGLCKQRKCM 342

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
           +    V + M   G + N+ +Y  L+++  K G    A  LF+ M   G  PD  T + L
Sbjct: 343 EAYA-VFETMNQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVL 401

Query: 369 IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428
           +    K+    D +EL++  R     ++ + Y +L++     G +E+AE LFE+M     
Sbjct: 402 VNGLCKSGRLDDGMELFDFCRNKGVAINAMFYASLIDGLGKAGRIEDAENLFEEMS-EKG 460

Query: 429 CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLV 488
           C  D+Y Y A+++     G +D A+ LF  M E G    V   T LI  L K  + ++ +
Sbjct: 461 CARDSYCYNAIIDALAKHGKIDQALALFGRMEEEGCDQTVYTFTILIDGLFKEHKNEEAI 520

Query: 489 RVFGVSIDRGVKP 501
           + +   ID+G+ P
Sbjct: 521 KFWDKMIDKGITP 533



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 154/332 (46%), Gaps = 5/332 (1%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           FF W   Q  +  +   +   ++ L F      I  +  E+    + +     +++I   
Sbjct: 136 FFFWAGKQKKYVHKIECHVSLIELLTFSADLVKIRLVFFELKDRGLLMTESAANSLIKSF 195

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWK--P 290
               L +E +  + RM + G+ P   TY+ +++    S  +E    ++E  V  G K  P
Sbjct: 196 GNLGLVEELLWVWRRMKENGIDPSLYTYNFLVNGLVNSMFIESAEKVFE--VMDGGKIVP 253

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
           D + ++++ K + ++G         ++M+   V+P+ + Y TL++A           SL+
Sbjct: 254 DTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKITYMTLIQACYSERDFDTCLSLY 313

Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
            EM E GL     + + +I    K R   +A  ++E M +     +  +Y  L++  +  
Sbjct: 314 LEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYAVFETMNQKGCRANVAIYTALIDSYSKN 373

Query: 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG 470
           G +EEA RLFE MK   + +PD  +Y+ ++N     G +D+ +ELF+     GVAIN M 
Sbjct: 374 GSMEEAMRLFERMKNEGF-EPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKGVAINAMF 432

Query: 471 CTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
              LI  LGKA RI+D   +F    ++G   D
Sbjct: 433 YASLIDGLGKAGRIEDAENLFEEMSEKGCARD 464



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 98/402 (24%), Positives = 174/402 (43%), Gaps = 39/402 (9%)

Query: 160 ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIE 219
           ++NS+ F + +   F  +    + P +T+ YN+ +K      + Q   +   +M    ++
Sbjct: 230 LVNSM-FIESAEKVFEVMDGGKIVP-DTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVK 287

Query: 220 LDNITYSTIITCAKRCNLFD-----------------------------------EAIEW 244
            D ITY T+I        FD                                   EA   
Sbjct: 288 PDKITYMTLIQACYSERDFDTCLSLYLEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYAV 347

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
           FE M + G   +   Y+A++D Y+K+G +EE + L+ER    G++PD + +SVL     +
Sbjct: 348 FETMNQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCK 407

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
           SG  D    +    ++ GV  N + Y +L++ +GKAG+   A +LF+EM E G   D   
Sbjct: 408 SGRLDDGMELFDFCRNKGVAINAMFYASLIDGLGKAGRIEDAENLFEEMSEKGCARDSYC 467

Query: 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
             A+I    K      AL L+ RM E         +  L++        EEA + ++ M 
Sbjct: 468 YNAIIDALAKHGKIDQALALFGRMEEEGCDQTVYTFTILIDGLFKEHKNEEAIKFWDKM- 526

Query: 425 LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484
           +     P   S+ A+       G V  A ++ ++++ +G+ I       +I  L KA+RI
Sbjct: 527 IDKGITPTVASFRALAIGLCLCGKVARACKILDDLAPMGI-IPETAFEDMINTLCKAQRI 585

Query: 485 DDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
            +  ++    +DRG +   R+   L++ +     S+ V K++
Sbjct: 586 KEACKLADGIVDRGREIPGRIRTVLINALRKAGNSDLVIKLM 627


>gi|147788022|emb|CAN69338.1| hypothetical protein VITISV_032632 [Vitis vinifera]
          Length = 585

 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 155/309 (50%), Gaps = 3/309 (0%)

Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           P  T+ +N  + S+   +Q+  +  L+N+M S  I  D  T + +I      N    A  
Sbjct: 64  PPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNILINSFCHLNRPGFAFS 123

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
              ++ K GL PD  T++ ++      GK+ + L L+++ +  G++P+ + +  L     
Sbjct: 124 VLAKILKLGLQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLC 183

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
           + G+ +    +L+ M+    QP++VVY ++++++ K  +   A +LF +MV  G++PD  
Sbjct: 184 KVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIF 243

Query: 364 TLTALIK-IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED 422
           T T+LI  +     W K    L  +M  +K   D ++++T+++     G + EA  +  D
Sbjct: 244 TYTSLIHSLCNLCEW-KHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVV-D 301

Query: 423 MKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKAR 482
           M +    +P+  +Y A+++ +     +D A+++F+ M   G A NV+    LI    K +
Sbjct: 302 MMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQ 361

Query: 483 RIDDLVRVF 491
           R+D    +F
Sbjct: 362 RMDKATYLF 370



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 91/362 (25%), Positives = 172/362 (47%), Gaps = 9/362 (2%)

Query: 116 SYNPRVRDLKLFARKLNDCDNTEEA--FLRAITEIPHQPTRENALLILNSL---KFWQKS 170
            + P V         L    NT  A   LR++ +   QP       I++SL   +   ++
Sbjct: 167 GFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEA 226

Query: 171 YFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIIT 230
           +  F+ +  Q + P +   Y   + SL    +++ +  L N+M++++I  D + +ST++ 
Sbjct: 227 FNLFSKMVGQGISP-DIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVD 285

Query: 231 CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
              +     EA +  + M   G+ P+ VTY+A++D +    +++E + +++  V +G+ P
Sbjct: 286 ALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAP 345

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
           + I+++ L   + +    D   Y+ +EM    + PN V YNTL+  +   G+   A +LF
Sbjct: 346 NVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIALF 405

Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
            EMV  G  PD  T   L+    K     +A+ L + +  +    D  +Y  +++     
Sbjct: 406 HEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRA 465

Query: 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG 470
           G +E A  +F ++  S   +P+  +YT M+N     G +D A +LF EM   G + +  G
Sbjct: 466 GELEAARDIFSNLS-SKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPD--G 522

Query: 471 CT 472
           CT
Sbjct: 523 CT 524



 Score =  112 bits (280), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 142/295 (48%), Gaps = 1/295 (0%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
            L ++M+    + + +TY T+I    +    + AI     M +    PD V Y++I+D  
Sbjct: 158 HLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSL 217

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            K  +V E  +L+ + V  G  PD   ++ L        ++  +  +L +M +  + P++
Sbjct: 218 CKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDV 277

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
           V+++T+++A+ K GK   A  + D M+  G+ P+  T  AL+  +       +A+++++ 
Sbjct: 278 VIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDT 337

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           M  N +  + I YNTL+N    I  +++A  LFE+M   +   P+  +Y  +++     G
Sbjct: 338 MVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELI-PNTVTYNTLMHGLCHVG 396

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            + +AI LF EM   G   ++     L+  L K   +D+ + +        + PD
Sbjct: 397 RLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPD 451



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 145/331 (43%), Gaps = 9/331 (2%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFD--EAIE 243
           + + Y   + SL   RQ      L ++MV   I  D  TY+++I     CNL +      
Sbjct: 206 DVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLI--HSLCNLCEWKHVTT 263

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
              +M  + +MPD V +S ++D   K GK+ E   + +  +  G +P+ + ++ L     
Sbjct: 264 LLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHC 323

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
              + D    V   M   G  PN++ YNTL+    K  +   A  LF+EM +  L P+  
Sbjct: 324 LQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTV 383

Query: 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
           T   L+         +DA+ L+  M  +    D   Y  LL+       ++EA  L + +
Sbjct: 384 TYNTLMHGLCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTI 443

Query: 424 KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483
           + S+   PD   YT +++     G ++ A ++F  +S  G+  NV   T +I  L +   
Sbjct: 444 EGSNM-DPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGL 502

Query: 484 IDDLVRVFGVSIDRGVKPDDRLCGCLLSVVS 514
           +D+  ++F      G  PD    GC  + ++
Sbjct: 503 LDEANKLFMEMDGNGCSPD----GCTYNTIT 529



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 96/418 (22%), Positives = 178/418 (42%), Gaps = 10/418 (2%)

Query: 93  TWVNPTKPRRSVLSLQRQKRSTYSYNPRVRDLKLFARKLNDCDNTEEAF--LRAITEIPH 150
           T +  TK   +V SL  Q  S +   P V  L +        +    AF  L  I ++  
Sbjct: 75  TSIAKTKQYPTVFSLSNQMDS-FGIPPDVYTLNILINSFCHLNRPGFAFSVLAKILKLGL 133

Query: 151 QPTRENALLILNSLKFWQK---SYFFFNWIKSQNLFPMETIFYNVTMKSL-RFGRQFQLI 206
           QP       ++  L    K   +   F+ +  +   P   + Y   +  L + G     I
Sbjct: 134 QPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQP-NVVTYGTLINGLCKVGNTNAAI 192

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
            +L   M     + D + Y++II    +     EA   F +M   G+ PD  TY++++  
Sbjct: 193 -RLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHS 251

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
                + + V +L  + + S   PD + FS +     + G       V+  M   GV+PN
Sbjct: 252 LCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPN 311

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
           +V YN L++      +   A  +FD MV +G  P+  +   LI  Y K +    A  L+E
Sbjct: 312 VVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFE 371

Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
            M + +   + + YNTL++    +G +++A  LF +M ++    PD  +Y  +L+     
Sbjct: 372 EMCQKELIPNTVTYNTLMHGLCHVGRLQDAIALFHEM-VAHGQIPDLATYRILLDYLCKK 430

Query: 447 GNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR 504
            ++D A+ L + +    +  ++   T +I  + +A  ++    +F     +G++P+ R
Sbjct: 431 SHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVR 488



 Score = 89.0 bits (219), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 108/232 (46%), Gaps = 5/232 (2%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           + YN  M       +     ++ + MV N    + I+Y+T+I    +    D+A   FE 
Sbjct: 313 VTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEE 372

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M +  L+P+ VTY+ ++      G++++ ++L+   VA G  PD   + +L     +   
Sbjct: 373 MCQKELIPNTVTYNTLMHGLCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSH 432

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
            D    +L+ ++   + P++ +Y  +++ M +AG+   AR +F  +   GL P+ +T T 
Sbjct: 433 LDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTI 492

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
           +I    +     +A +L+  M  N    D   YNT+       GL++  E L
Sbjct: 493 MINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQ-----GLLQNKEAL 539



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/214 (23%), Positives = 96/214 (44%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  EM   E+  + +TY+T++          +AI  F  M   G +PD  TY  +LD   
Sbjct: 369 LFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLC 428

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           K   ++E ++L +    S   PD   ++++      +G+ +  R +   + S G++PN+ 
Sbjct: 429 KKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVR 488

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            Y  ++  + + G    A  LF EM  +G +PD  T   + +   + + A  A++L + M
Sbjct: 489 TYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEM 548

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFED 422
               +  D      L+ M  D  L +  +++  +
Sbjct: 549 LARGFSADVSTTTLLVEMLCDDKLDQSVKQILSE 582


>gi|125528270|gb|EAY76384.1| hypothetical protein OsI_04314 [Oryza sativa Indica Group]
          Length = 665

 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 103/414 (24%), Positives = 176/414 (42%), Gaps = 16/414 (3%)

Query: 91  KSTWVNPTKPRRSVLSLQRQKRSTYSYNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPH 150
           KS WVNP+ P       ++     +     V DL      L+      +    A    PH
Sbjct: 34  KSVWVNPSLPSSHPFHRRKPAEPQHQRQDHVPDLPALLAALSAARTASDL---AAAVSPH 90

Query: 151 QPTRENAL-LILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQL 209
           +P     L  +L+ L   ++     + +          I YN+ ++S       +L   L
Sbjct: 91  RPVSPRLLGTLLSRLPDARRGVALLDLLAPDLPASALLIPYNLLLRSACRAGMLRLASGL 150

Query: 210 ANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAK 269
             EM    +  D  +YST++    R    D A+ +   M    + PD V +S ++ +  +
Sbjct: 151 LLEMRDRGVAPDAFSYSTLLAALTRAGHLDHALTFLPLMEDDAVAPDLVLFSNLIHLALR 210

Query: 270 SGKVEEVLSLYER-GVASGWKPDPIAFSVLGKMFGESGDY-DGIRYVLQEMKSLGVQPNL 327
            G   + L+L+ R   A+G KPD  A++     + +S    D  R +L +M S GV P+ 
Sbjct: 211 GGDAPKALALFSRLRGAAGIKPDLKAYNAAIAAYCKSDLLRDANRLLLHDMPSDGVAPDA 270

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEM-VESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
             Y+ +L A+ + G+   A SLF  M   + + PD      ++  YG+   A++A  L+ 
Sbjct: 271 ESYSPILAALARRGRHLAAVSLFTHMRTVARVKPDLSVFNIVLNAYGQLDLAREADRLFW 330

Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS---------DYCKPDNYSYT 437
            MR        + YNT+L +  D GL  EA  LF  M+ +            KP+  +Y 
Sbjct: 331 SMRRAGVAPSVVTYNTMLRVYGDAGLFGEAVHLFGLMRSAASDGSDRGGSVIKPNVVTYN 390

Query: 438 AMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
            M+ IYG     + A  L ++M   G+  N +  + ++    KA ++D   ++F
Sbjct: 391 TMIAIYGKSLEDEKAGSLVQDMQANGIQPNAITYSTILSIWVKAGKLDRAGKLF 444



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 143/305 (46%), Gaps = 16/305 (5%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTG-LMPDEVTYSAILDVY 267
           L ++M S+ +  D  +YS I+    R      A+  F  M     + PD   ++ +L+ Y
Sbjct: 257 LLHDMPSDGVAPDAESYSPILAALARRGRHLAAVSLFTHMRTVARVKPDLSVFNIVLNAY 316

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG----- 322
            +     E   L+     +G  P  + ++ + +++G++G +    ++   M+S       
Sbjct: 317 GQLDLAREADRLFWSMRRAGVAPSVVTYNTMLRVYGDAGLFGEAVHLFGLMRSAASDGSD 376

Query: 323 -----VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARW 377
                ++PN+V YNT++   GK+ +   A SL  +M  +G+ P+  T + ++ I+ KA  
Sbjct: 377 RGGSVIKPNVVTYNTMIAIYGKSLEDEKAGSLVQDMQANGIQPNAITYSTILSIWVKAGK 436

Query: 378 AKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYT 437
              A +L+E++RE    +D +LY T++      GLV +++RL  D+K S+    D    T
Sbjct: 437 LDRAGKLFEKLREAGTEIDPVLYQTMVVAYERAGLVSQSKRLLHDLKDSE----DVPKET 492

Query: 438 AMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDR 497
           A + I  + G V+ A  LF   ++ G   +      +I    K+RR   ++ VF      
Sbjct: 493 A-IKILANAGRVEEAAWLFRRAADAGDVRDTSVYRMMIDLFAKSRRHRSVIEVFDEMRKA 551

Query: 498 GVKPD 502
           G  PD
Sbjct: 552 GSLPD 556



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 122/294 (41%), Gaps = 33/294 (11%)

Query: 276 VLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLE 335
           +L + +RGVA    PD  ++S L      +G  D     L  M+   V P+LV+++ L+ 
Sbjct: 151 LLEMRDRGVA----PDAFSYSTLLAALTRAGHLDHALTFLPLMEDDAVAPDLVLFSNLIH 206

Query: 336 AMGKAGKPGLARSLFDEMV-ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWP 394
              + G    A +LF  +   +G+ PD K   A I  Y K+   +DA     R+  +  P
Sbjct: 207 LALRGGDAPKALALFSRLRGAAGIKPDLKAYNAAIAAYCKSDLLRDA----NRLLLHDMP 262

Query: 395 MDFIL-----YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNV 449
            D +      Y+ +L   A  G    A  LF  M+     KPD   +  +LN YG     
Sbjct: 263 SDGVAPDAESYSPILAALARRGRHLAAVSLFTHMRTVARVKPDLSVFNIVLNAYGQLDLA 322

Query: 450 DNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGV-------SIDRG---V 499
             A  LF  M   GVA +V+    +++  G A    + V +FG+         DRG   +
Sbjct: 323 READRLFWSMRRAGVAPSVVTYNTMLRVYGDAGLFGEAVHLFGLMRSAASDGSDRGGSVI 382

Query: 500 KPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENI 553
           KP+      ++++       E  G ++  +Q          N I+ N+  +  I
Sbjct: 383 KPNVVTYNTMIAIYGKSLEDEKAGSLVQDMQA---------NGIQPNAITYSTI 427



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 83/182 (45%), Gaps = 4/182 (2%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  +M +N I+ + ITYSTI++   +    D A + FE++ + G   D V Y  ++  Y 
Sbjct: 408 LVQDMQANGIQPNAITYSTILSIWVKAGKLDRAGKLFEKLREAGTEIDPVLYQTMVVAYE 467

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           ++G V +   L      S   P   A     K+   +G  +   ++ +     G   +  
Sbjct: 468 RAGLVSQSKRLLHDLKDSEDVPKETAI----KILANAGRVEEAAWLFRRAADAGDVRDTS 523

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
           VY  +++   K+ +      +FDEM ++G  PD +T+   +  +GK +    A  L+  M
Sbjct: 524 VYRMMIDLFAKSRRHRSVIEVFDEMRKAGSLPDSETIAITMNAHGKLKEFDKAAALYRAM 583

Query: 389 RE 390
           RE
Sbjct: 584 RE 585



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 99/218 (45%), Gaps = 6/218 (2%)

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
           L+ YN LL +  +AG   LA  L  EM + G+ PD  + + L+    +A     AL    
Sbjct: 128 LIPYNLLLRSACRAGMLRLASGLLLEMRDRGVAPDAFSYSTLLAALTRAGHLDHALTFLP 187

Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
            M ++    D +L++ L+++    G   +A  LF  ++ +   KPD  +Y A +  Y   
Sbjct: 188 LMEDDAVAPDLVLFSNLIHLALRGGDAPKALALFSRLRGAAGIKPDLKAYNAAIAAYCKS 247

Query: 447 GNVDNAIE-LFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFG--VSIDRGVKPDD 503
             + +A   L  +M   GVA +    + ++  L +  R    V +F    ++ R VKPD 
Sbjct: 248 DLLRDANRLLLHDMPSDGVAPDAESYSPILAALARRGRHLAAVSLFTHMRTVAR-VKPDL 306

Query: 504 RLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAF 539
            +   +L+     + + +  ++   +++A   P +V +
Sbjct: 307 SVFNIVLNAYGQLDLAREADRLFWSMRRAGVAPSVVTY 344


>gi|8778650|gb|AAF79658.1|AC025416_32 F5O11.4 [Arabidopsis thaliana]
          Length = 975

 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 141/300 (47%), Gaps = 1/300 (0%)

Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS 261
           Q  L  +L  +M    I+LD + YS II    +    D A   F  M   G+  + +TY+
Sbjct: 341 QTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYN 400

Query: 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
            ++  +  +G+ ++   L    +     P+ + FSVL   F + G       + +EM   
Sbjct: 401 ILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHR 460

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
           G+ P+ + Y +L++   K      A  + D MV  G  P+ +T   LI  Y KA    D 
Sbjct: 461 GIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDG 520

Query: 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
           LEL+ +M       D + YNTL+    ++G +  A+ LF++M +S    P+  +Y  +L+
Sbjct: 521 LELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEM-VSRKVPPNIVTYKILLD 579

Query: 442 IYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
                G  + A+E+FE++ +  + +++     +I  +  A ++DD   +F     +GVKP
Sbjct: 580 GLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKP 639



 Score =  113 bits (282), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 138/311 (44%), Gaps = 1/311 (0%)

Query: 201 RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTY 260
           +Q+ L+  L  +M    I  +  T S +I C  RC     A     ++ K G  P+ +T+
Sbjct: 200 KQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITF 259

Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
           S +++     G+V E L L +R V  G KPD I  + L      SG       ++ +M  
Sbjct: 260 STLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVE 319

Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380
            G QPN V Y  +L  M K+G+  LA  L  +M E  +  D    + +I    K     +
Sbjct: 320 YGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDN 379

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
           A  L+  M       + I YN L+    + G  ++  +L  DM +     P+  +++ ++
Sbjct: 380 AFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDM-IKRKINPNVVTFSVLI 438

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
           + +   G +  A EL +EM   G+A + +  T LI    K   +D   ++  + + +G  
Sbjct: 439 DSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCD 498

Query: 501 PDDRLCGCLLS 511
           P+ R    L++
Sbjct: 499 PNIRTFNILIN 509



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 80/321 (24%), Positives = 148/321 (46%), Gaps = 4/321 (1%)

Query: 200 GRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVT 259
           GR  + +E L + MV    + D IT +T++          EA+   ++M + G  P+ VT
Sbjct: 270 GRVSEALE-LVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVT 328

Query: 260 YSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMK 319
           Y  +L+V  KSG+    + L  +      K D + +S++     + G  D    +  EM+
Sbjct: 329 YGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEME 388

Query: 320 SLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAK 379
             G+  N++ YN L+     AG+      L  +M++  + P+  T + LI  + K    +
Sbjct: 389 MKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLR 448

Query: 380 DALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAM 439
           +A EL + M       D I Y +L++       +++A ++  D+ +S  C P+  ++  +
Sbjct: 449 EAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMV-DLMVSKGCDPNIRTFNIL 507

Query: 440 LNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGV 499
           +N Y     +D+ +ELF +MS  GV  + +    LIQ   +  +++    +F   + R V
Sbjct: 508 INGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKV 567

Query: 500 KPDDRLCGCLLSVVSLCETSE 520
            P+      LL    LC+  E
Sbjct: 568 PPNIVTYKILLD--GLCDNGE 586



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 137/292 (46%), Gaps = 1/292 (0%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
            + ++V + S     + +  E+L  EM+   I  D ITY+++I    + N  D+A +  +
Sbjct: 431 VVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVD 490

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
            M   G  P+  T++ +++ Y K+ ++++ L L+ +    G   D + ++ L + F E G
Sbjct: 491 LMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELG 550

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
             +  + + QEM S  V PN+V Y  LL+ +   G+   A  +F+++ +S +  D     
Sbjct: 551 KLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYN 610

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
            +I     A    DA +L+  +           YN ++      G + EAE LF  M+  
Sbjct: 611 IIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKME-E 669

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL 478
           D   PD ++Y  ++  +   G+   +++L EE+   G +++      +I  L
Sbjct: 670 DGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDASTIKMVIDML 721



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 92/202 (45%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           +L  +M    +  D +TY+T+I         + A E F+ M    + P+ VTY  +LD  
Sbjct: 522 ELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGL 581

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
             +G+ E+ L ++E+   S  + D   ++++      +   D    +   +   GV+P +
Sbjct: 582 CDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGV 641

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
             YN ++  + K G    A  LF +M E G  PD  T   LI+ +     A  +++L E 
Sbjct: 642 KTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEE 701

Query: 388 MRENKWPMDFILYNTLLNMCAD 409
           ++   + +D      +++M +D
Sbjct: 702 LKRCGFSVDASTIKMVIDMLSD 723



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/186 (20%), Positives = 84/186 (45%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           +T+ YN  ++      +  + ++L  EMVS ++  + +TY  ++         ++A+E F
Sbjct: 535 DTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIF 594

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           E++ K+ +  D   Y+ I+     + KV++   L+      G KP    ++++     + 
Sbjct: 595 EKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKK 654

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G       + ++M+  G  P+   YN L+ A    G    +  L +E+   G + D  T+
Sbjct: 655 GPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDASTI 714

Query: 366 TALIKI 371
             +I +
Sbjct: 715 KMVIDM 720


>gi|115440343|ref|NP_001044451.1| Os01g0783100 [Oryza sativa Japonica Group]
 gi|20804869|dbj|BAB92551.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113533982|dbj|BAF06365.1| Os01g0783100 [Oryza sativa Japonica Group]
          Length = 684

 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/316 (25%), Positives = 145/316 (45%), Gaps = 8/316 (2%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
           T+      KS  FG+  ++++++  +  +  I    +TY+ II    R    D+A E+  
Sbjct: 184 TVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNI----VTYNVIINGMCREGRVDDAREFLN 239

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
           R+   G  PD V+Y+ +L     + + E+V  L+   +     P+ + F +L + F   G
Sbjct: 240 RLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGG 299

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
             +    VL++M   G   N  + N ++  + K G+   A    + M   G +PD  + T
Sbjct: 300 MVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYT 359

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
            ++K   +A   +DA EL + M     P + + +NT + +    GL+E+A  L E M   
Sbjct: 360 TVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMS-E 418

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
             C+ +  +Y A++N +   G VD+A+ELF  M       N +  T L+  L  A R+D 
Sbjct: 419 HGCEVNIVTYNALVNGFCVQGRVDSALELFYSMP---CKPNTITYTTLLTGLCNAERLDA 475

Query: 487 LVRVFGVSIDRGVKPD 502
              +    + +   P+
Sbjct: 476 AAELLAEMLQKDCAPN 491



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 93/406 (22%), Positives = 169/406 (41%), Gaps = 42/406 (10%)

Query: 135 DNTEEAFLRAITEIPHQPTRENALLILNSL---KFWQKSYFFFNWIKSQNLFPMETIFYN 191
           D+  E FL  ++    QP   +   +L  L   K W+     F  +  +N  P E  F  
Sbjct: 232 DDARE-FLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDM 290

Query: 192 VTMKSLRFG---RQFQLIEQLA-------------------------------NEMVSNE 217
           +     R G   R  Q++EQ++                               N M S  
Sbjct: 291 LVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYG 350

Query: 218 IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL 277
              D I+Y+T++    R   +++A E  + M +    P+EVT++  + +  + G +E+  
Sbjct: 351 CSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQAT 410

Query: 278 SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
            L E+    G + + + ++ L   F   G  D     L+   S+  +PN + Y TLL  +
Sbjct: 411 MLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDS---ALELFYSMPCKPNTITYTTLLTGL 467

Query: 338 GKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDF 397
             A +   A  L  EM++    P+  T   L+  + +     +A+EL E+M E+    + 
Sbjct: 468 CNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNL 527

Query: 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE 457
           I YNTLL+        EEA  L   + +S+   PD  +Y++++ +      V+ AI++F 
Sbjct: 528 ITYNTLLDGITKDCNSEEALELLHGL-VSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFH 586

Query: 458 EMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
            + +LG+    +    ++  L K    D  +  F   +  G  P++
Sbjct: 587 IVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNE 632



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 85/369 (23%), Positives = 165/369 (44%), Gaps = 7/369 (1%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           F N + S    P +T+ Y   +K L   ++++ +E+L  EM+      + +T+  ++   
Sbjct: 237 FLNRLSSYGFQP-DTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFF 295

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            R  + + AI+  E+M   G   +    + +++   K G+V++         + G  PD 
Sbjct: 296 CRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDT 355

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           I+++ + K    +  ++  + +L+EM      PN V +NT +  + + G    A  L ++
Sbjct: 356 ISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQ 415

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M E G   +  T  AL+  +        ALEL+  M       + I Y TLL    +   
Sbjct: 416 MSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSM---PCKPNTITYTTLLTGLCNAER 472

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
           ++ A  L  +M   D C P+  ++  +++ +   G +D AIEL E+M E G   N++   
Sbjct: 473 LDAAAELLAEMLQKD-CAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYN 531

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ- 531
            L+  + K    ++ + +    +  GV PD      ++ V+S  +  E+  K+   +Q  
Sbjct: 532 TLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDL 591

Query: 532 -ANPKLVAF 539
              PK V +
Sbjct: 592 GMRPKAVIY 600



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 127/284 (44%), Gaps = 4/284 (1%)

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
           +D   Y+T++    R    D A      M    + PD  TY+ I+      G+V E LSL
Sbjct: 111 VDVFAYNTLVAGYCRYGQLDAARRLIASM---PVAPDAYTYTPIIRGLCDRGRVGEALSL 167

Query: 280 YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
            +  +  G +P  + ++VL +   +S  +     VL EM++ G  PN+V YN ++  M +
Sbjct: 168 LDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCR 227

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
            G+   AR   + +   G  PD  + T ++K    A+  +D  EL+  M E     + + 
Sbjct: 228 EGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVT 287

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           ++ L+      G+VE A ++ E M     C  +      ++N     G VD+A +    M
Sbjct: 288 FDMLVRFFCRGGMVERAIQVLEQMS-GHGCAANTTLCNIVINTICKQGRVDDAFQFLNNM 346

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
              G + + +  T +++ L +A R +D   +    + +   P++
Sbjct: 347 GSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNE 390



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 99/203 (48%), Gaps = 2/203 (0%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
           TI Y   +  L    +     +L  EM+  +   + +T++ +++   +  L DEAIE  E
Sbjct: 457 TITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVE 516

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS-VLGKMFGES 305
           +M + G  P+ +TY+ +LD   K    EE L L    V++G  PD + +S ++G +  E 
Sbjct: 517 QMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSRED 576

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
              + I+ +   ++ LG++P  V+YN +L A+ K      A   F  MV +G  P+E T 
Sbjct: 577 RVEEAIK-MFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTY 635

Query: 366 TALIKIYGKARWAKDALELWERM 388
             LI+      + K+  +L   +
Sbjct: 636 ITLIEGLANEDFLKETRDLLREL 658



 Score = 62.4 bits (150), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 73/152 (48%), Gaps = 2/152 (1%)

Query: 208 QLANEMVSNEIELDNITYSTIIT-CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
           +L  +M+ +    + ITY+T++    K CN  +EA+E    +   G+ PD VTYS+I+ V
Sbjct: 513 ELVEQMMEHGCTPNLITYNTLLDGITKDCN-SEEALELLHGLVSNGVSPDIVTYSSIIGV 571

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
            ++  +VEE + ++      G +P  + ++ +     +  + DG       M S G  PN
Sbjct: 572 LSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPN 631

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
            + Y TL+E +         R L  E+   G+
Sbjct: 632 ELTYITLIEGLANEDFLKETRDLLRELCSRGV 663



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 76/335 (22%), Positives = 124/335 (37%), Gaps = 48/335 (14%)

Query: 275 EVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLL 334
           E   L +R  + G  PD    + L +     G       VL+  +  G   ++  YNTL+
Sbjct: 61  EAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLV 120

Query: 335 EAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWP 394
               + G+   AR L   M    + PD  T T +I+                        
Sbjct: 121 AGYCRYGQLDAARRLIASM---PVAPDAYTYTPIIR------------------------ 153

Query: 395 MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIE 454
                      +C D G V EA  L +DM L   C+P   +YT +L           A+E
Sbjct: 154 ----------GLC-DRGRVGEALSLLDDM-LHRGCQPSVVTYTVLLEAVCKSTGFGQAME 201

Query: 455 LFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVS 514
           + +EM   G   N++    +I  + +  R+DD           G +PD      +L  + 
Sbjct: 202 VLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLC 261

Query: 515 LCETSEDVGKVITCLQQAN--PKLVAFLNLIEDNSTGFENIKEEFRNVIKDTE---VDAR 569
             +  EDV ++   + + N  P  V F  L+     G   + E    V++        A 
Sbjct: 262 AAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRG--GMVERAIQVLEQMSGHGCAAN 319

Query: 570 RPFCNCLID-ICRNRNLNERAHELLYLGTLYGLYP 603
              CN +I+ IC+   +++    L  +G+ YG  P
Sbjct: 320 TTLCNIVINTICKQGRVDDAFQFLNNMGS-YGCSP 353


>gi|115440859|ref|NP_001044709.1| Os01g0833000 [Oryza sativa Japonica Group]
 gi|20805252|dbj|BAB92918.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113534240|dbj|BAF06623.1| Os01g0833000 [Oryza sativa Japonica Group]
          Length = 665

 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 103/414 (24%), Positives = 176/414 (42%), Gaps = 16/414 (3%)

Query: 91  KSTWVNPTKPRRSVLSLQRQKRSTYSYNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPH 150
           KS WVNP+ P       ++     +     V DL      L+      +    A    PH
Sbjct: 34  KSVWVNPSLPSSQPFHRRKPAEPQHQRQDHVPDLPALLAALSAARTASDL---AAAVSPH 90

Query: 151 QPTRENAL-LILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQL 209
           +P     L  +L+ L   ++     + +          I YN+ ++S       +L   L
Sbjct: 91  RPVSPRLLGTLLSRLPDARRGVALLDLLAPDLPASALLIPYNLLLRSACRAGMLRLASGL 150

Query: 210 ANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAK 269
             EM    +  D  +YST++    R    D A+ +   M    + PD V +S ++ +  +
Sbjct: 151 LLEMRDRGVAPDAFSYSTLLAALTRAGHLDHALTFLPLMEDDAVAPDLVLFSNLIHLALR 210

Query: 270 SGKVEEVLSLYER-GVASGWKPDPIAFSVLGKMFGESGDY-DGIRYVLQEMKSLGVQPNL 327
            G   + L+L+ R   A+G KPD  A++     + +S    D  R +L +M S GV P+ 
Sbjct: 211 GGDAPKALALFSRLRGAAGIKPDLKAYNAAIAAYCKSDLLRDANRLLLHDMPSDGVAPDA 270

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEM-VESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
             Y+ +L A+ + G+   A SLF  M   + + PD      ++  YG+   A++A  L+ 
Sbjct: 271 ESYSPILAALARRGRHLAAVSLFTHMRAVARVKPDLSVFNIVLNAYGQLDLAREADRLFW 330

Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS---------DYCKPDNYSYT 437
            MR        + YNT+L +  D GL  EA  LF  M+ +            KP+  +Y 
Sbjct: 331 SMRRAGVAPSVVTYNTMLRVYGDAGLFGEAVHLFGLMRSAASDGSDRGGSVIKPNVVTYN 390

Query: 438 AMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
            M+ IYG     + A  L ++M   G+  N +  + ++    KA ++D   ++F
Sbjct: 391 TMIAIYGKSLEDEKAGSLVQDMQANGIQPNAITYSTILSIWVKAGKLDRAGKLF 444



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 143/305 (46%), Gaps = 16/305 (5%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTG-LMPDEVTYSAILDVY 267
           L ++M S+ +  D  +YS I+    R      A+  F  M     + PD   ++ +L+ Y
Sbjct: 257 LLHDMPSDGVAPDAESYSPILAALARRGRHLAAVSLFTHMRAVARVKPDLSVFNIVLNAY 316

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG----- 322
            +     E   L+     +G  P  + ++ + +++G++G +    ++   M+S       
Sbjct: 317 GQLDLAREADRLFWSMRRAGVAPSVVTYNTMLRVYGDAGLFGEAVHLFGLMRSAASDGSD 376

Query: 323 -----VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARW 377
                ++PN+V YNT++   GK+ +   A SL  +M  +G+ P+  T + ++ I+ KA  
Sbjct: 377 RGGSVIKPNVVTYNTMIAIYGKSLEDEKAGSLVQDMQANGIQPNAITYSTILSIWVKAGK 436

Query: 378 AKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYT 437
              A +L+E++RE    +D +LY T++      GLV +++RL  D+K S+    D    T
Sbjct: 437 LDRAGKLFEKLREAGTEIDPVLYQTMVVAYERAGLVSQSKRLLHDLKDSE----DVPKET 492

Query: 438 AMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDR 497
           A + I  + G V+ A  LF   ++ G   +      +I    K+RR   ++ VF      
Sbjct: 493 A-IKILANAGRVEEAAWLFRRAADAGDVRDTSVYRMMIDLFAKSRRHRSVIEVFDEMRKA 551

Query: 498 GVKPD 502
           G  PD
Sbjct: 552 GSLPD 556



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 122/294 (41%), Gaps = 33/294 (11%)

Query: 276 VLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLE 335
           +L + +RGVA    PD  ++S L      +G  D     L  M+   V P+LV+++ L+ 
Sbjct: 151 LLEMRDRGVA----PDAFSYSTLLAALTRAGHLDHALTFLPLMEDDAVAPDLVLFSNLIH 206

Query: 336 AMGKAGKPGLARSLFDEMV-ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWP 394
              + G    A +LF  +   +G+ PD K   A I  Y K+   +DA     R+  +  P
Sbjct: 207 LALRGGDAPKALALFSRLRGAAGIKPDLKAYNAAIAAYCKSDLLRDA----NRLLLHDMP 262

Query: 395 MDFIL-----YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNV 449
            D +      Y+ +L   A  G    A  LF  M+     KPD   +  +LN YG     
Sbjct: 263 SDGVAPDAESYSPILAALARRGRHLAAVSLFTHMRAVARVKPDLSVFNIVLNAYGQLDLA 322

Query: 450 DNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGV-------SIDRG---V 499
             A  LF  M   GVA +V+    +++  G A    + V +FG+         DRG   +
Sbjct: 323 READRLFWSMRRAGVAPSVVTYNTMLRVYGDAGLFGEAVHLFGLMRSAASDGSDRGGSVI 382

Query: 500 KPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENI 553
           KP+      ++++       E  G ++  +Q          N I+ N+  +  I
Sbjct: 383 KPNVVTYNTMIAIYGKSLEDEKAGSLVQDMQA---------NGIQPNAITYSTI 427



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 83/182 (45%), Gaps = 4/182 (2%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  +M +N I+ + ITYSTI++   +    D A + FE++ + G   D V Y  ++  Y 
Sbjct: 408 LVQDMQANGIQPNAITYSTILSIWVKAGKLDRAGKLFEKLREAGTEIDPVLYQTMVVAYE 467

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           ++G V +   L      S   P   A     K+   +G  +   ++ +     G   +  
Sbjct: 468 RAGLVSQSKRLLHDLKDSEDVPKETAI----KILANAGRVEEAAWLFRRAADAGDVRDTS 523

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
           VY  +++   K+ +      +FDEM ++G  PD +T+   +  +GK +    A  L+  M
Sbjct: 524 VYRMMIDLFAKSRRHRSVIEVFDEMRKAGSLPDSETIAITMNAHGKLKEFDKAAALYRAM 583

Query: 389 RE 390
           RE
Sbjct: 584 RE 585



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 99/218 (45%), Gaps = 6/218 (2%)

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
           L+ YN LL +  +AG   LA  L  EM + G+ PD  + + L+    +A     AL    
Sbjct: 128 LIPYNLLLRSACRAGMLRLASGLLLEMRDRGVAPDAFSYSTLLAALTRAGHLDHALTFLP 187

Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
            M ++    D +L++ L+++    G   +A  LF  ++ +   KPD  +Y A +  Y   
Sbjct: 188 LMEDDAVAPDLVLFSNLIHLALRGGDAPKALALFSRLRGAAGIKPDLKAYNAAIAAYCKS 247

Query: 447 GNVDNAIE-LFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFG--VSIDRGVKPDD 503
             + +A   L  +M   GVA +    + ++  L +  R    V +F    ++ R VKPD 
Sbjct: 248 DLLRDANRLLLHDMPSDGVAPDAESYSPILAALARRGRHLAAVSLFTHMRAVAR-VKPDL 306

Query: 504 RLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAF 539
            +   +L+     + + +  ++   +++A   P +V +
Sbjct: 307 SVFNIVLNAYGQLDLAREADRLFWSMRRAGVAPSVVTY 344


>gi|410110117|gb|AFV61138.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           hermannioides]
          Length = 382

 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/366 (22%), Positives = 170/366 (46%), Gaps = 6/366 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K     P + + YN  +      + F+    L +EM +  +  +  +YS
Sbjct: 21  YSKAISIFSRLKRSGFTP-DLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYS 79

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY + G  +E   L+      
Sbjct: 80  TLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 139

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   ++ N+V YN+++   GK  +   A
Sbjct: 140 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKA 199

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R +   +D IL+ T++  
Sbjct: 200 NNLIQEMQSRGIEPNSITYSTIISIWGKXGKLDRAAMLFQKLRSSGVEIDQILFQTMIVA 259

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GLV  A+RL  ++K     +PDN      ++I    G ++ A  +F +  + G   
Sbjct: 260 YERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVK 314

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
            +     +I  L K ++  ++V VF      G  PD  +   +L+     +  +    V 
Sbjct: 315 XITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVY 374

Query: 527 TCLQQA 532
             +Q+ 
Sbjct: 375 MEMQEV 380



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 129/247 (52%), Gaps = 1/247 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D + YS +I  +++   + +AI  F R+ ++G  PD V Y+A+++V+ K+    E  SL 
Sbjct: 4   DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLI 63

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
                +G  P+  ++S L  M+ E+  +     V  EM+ +    +L   N +++  G+ 
Sbjct: 64  SEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQL 123

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G    A  LF  M + G+ P+  +   L+++YG A    +A+ L+  M+      + + Y
Sbjct: 124 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 183

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           N+++ +       E+A  L ++M+ S   +P++ +Y+ +++I+G  G +D A  LF+++ 
Sbjct: 184 NSMMMIYGKTLEHEKANNLIQEMQ-SRGIEPNSITYSTIISIWGKXGKLDRAAMLFQKLR 242

Query: 461 ELGVAIN 467
             GV I+
Sbjct: 243 SSGVEID 249



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 82/169 (48%), Gaps = 1/169 (0%)

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382
           V  +LV+Y+ L+E   K      A S+F  +  SG TPD     A+I ++GKA+  ++A 
Sbjct: 1   VPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREAR 60

Query: 383 ELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNI 442
            L   M+      +   Y+TLL M  +     EA  +F +M+    C  D  +   M+++
Sbjct: 61  SLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMR-EIKCLLDLTTCNIMIDV 119

Query: 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           YG  G    A +LF  M ++G+  NV+    L++  G A    + + +F
Sbjct: 120 YGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLF 168



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/242 (20%), Positives = 99/242 (40%), Gaps = 36/242 (14%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGR--QFQLI 206
           P+  +    L +    + + ++   F  ++ +N+     + YN  M  + +G+  + +  
Sbjct: 143 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNI-EQNVVTYNSMM--MIYGKTLEHEKA 199

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
             L  EM S  IE ++ITYSTII+   +    D A   F+++  +G+  D++ +  ++  
Sbjct: 200 NNLIQEMQSRGIEPNSITYSTIISIWGKXGKLDRAAMLFQKLRSSGVEIDQILFQTMIVA 259

Query: 267 Y-------------------------------AKSGKVEEVLSLYERGVASGWKPDPIAF 295
           Y                               A +G++EE   ++ + + +G       F
Sbjct: 260 YERAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKXITVF 319

Query: 296 SVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVE 355
             +  +  +   Y  +  V  +M+ LG  P+  V   +L A GK  +   A  ++ EM E
Sbjct: 320 ERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEMQE 379

Query: 356 SG 357
            G
Sbjct: 380 VG 381



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 69/153 (45%), Gaps = 1/153 (0%)

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
           A+ ++ R++ + +  D + YN ++N+     L  EA  L  +MK +    P+  SY+ +L
Sbjct: 24  AISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAG-VMPNTTSYSTLL 82

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
            +Y        A+ +F EM E+   +++  C  +I   G+     +  ++F      G++
Sbjct: 83  TMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 142

Query: 501 PDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN 533
           P+      LL V    E   +   +   +Q+ N
Sbjct: 143 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKN 175


>gi|449459086|ref|XP_004147277.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
 gi|449501214|ref|XP_004161309.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
          Length = 908

 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/314 (27%), Positives = 153/314 (48%), Gaps = 1/314 (0%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           Y V +K L   + F   +++ N+   N   L  +TY+  I    +     EA+E    + 
Sbjct: 228 YTVVVKCLCELKDFNKAKEIINQAEGNGCSLSIVTYNVFINGLCKSKRVWEAVEVKRSLG 287

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
           + GL  D VTY  ++    +  + E  + + +  +  G+ P   A S L +   + G  +
Sbjct: 288 EKGLKADLVTYCTLVLGLCRIQEFEVGMEMMDEMIELGYVPSEAAVSGLIEGLIKMGSIE 347

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
           G   +L ++  LGV PNL VYN+++ ++ K GK   A  LF  M E GL P++ T T LI
Sbjct: 348 GAFELLNKVGKLGVVPNLFVYNSMINSLCKTGKLEEAELLFSVMAERGLNPNDVTYTILI 407

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
             +G+      A   + +M E         YN+++N     G ++ AE LF++M +    
Sbjct: 408 DGFGRRAKLDVAFYYFNKMIECGISATVYSYNSMINCQCKFGKMKMAELLFKEM-VDKGL 466

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
           KP   +YT++++ Y   G V  A +L+ EM+  G+A N +  T LI  L +  ++ +  +
Sbjct: 467 KPTVATYTSLISGYCKDGLVPKAFKLYHEMTGKGIAPNTVTFTALICGLCQINKMAEASK 526

Query: 490 VFGVSIDRGVKPDD 503
           +F   ++  + P++
Sbjct: 527 LFDEMVELKILPNE 540



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 131/289 (45%), Gaps = 36/289 (12%)

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M   GL+P+  T SA+L+  A+  K  +VL L++  V +G KPD   ++V+ K   E  D
Sbjct: 181 MRDYGLLPEVRTLSALLNALARIRKFRQVLELFDTLVNAGVKPDCYIYTVVVKCLCELKD 240

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA-------------GKPGLARSL----- 349
           ++  + ++ + +  G   ++V YN  +  + K+             G+ GL   L     
Sbjct: 241 FNKAKEIINQAEGNGCSLSIVTYNVFINGLCKSKRVWEAVEVKRSLGEKGLKADLVTYCT 300

Query: 350 -----------------FDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENK 392
                             DEM+E G  P E  ++ LI+   K    + A EL  ++ +  
Sbjct: 301 LVLGLCRIQEFEVGMEMMDEMIELGYVPSEAAVSGLIEGLIKMGSIEGAFELLNKVGKLG 360

Query: 393 WPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNA 452
              +  +YN+++N     G +EEAE LF  M       P++ +YT +++ +G    +D A
Sbjct: 361 VVPNLFVYNSMINSLCKTGKLEEAELLFSVMAERGL-NPNDVTYTILIDGFGRRAKLDVA 419

Query: 453 IELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
              F +M E G++  V     +I C  K  ++     +F   +D+G+KP
Sbjct: 420 FYYFNKMIECGISATVYSYNSMINCQCKFGKMKMAELLFKEMVDKGLKP 468



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 137/296 (46%), Gaps = 5/296 (1%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           +L +EM+   +  D  TY  +I          EA E+   ++      DE+ Y+A+L  +
Sbjct: 561 ELLDEMIKKGLSPDTYTYRPLIAGLCSTGRVSEAKEFINDLHHKHQRLDELCYTALLQGF 620

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRY-VLQEMKSLGVQPN 326
            K G+++E L   +  V  G + D ++++VL  + G     D I + +L+EM   G+QP+
Sbjct: 621 CKEGRIKEALVARQEMVGRGLQMDLVSYAVL--ISGALNQNDRILFELLREMHGKGMQPD 678

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
            V+Y  L++   K+G    A   +  M+  G  P+  T TAL+    KA +  +A  L++
Sbjct: 679 NVIYTILIDGFIKSGNLKKAFEFWYIMIGEGYVPNSVTYTALVNGLFKAGYVNEAKLLFK 738

Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
           RM   +   + I Y   L+     G +E A +L   M    +   +  +Y  ++  Y   
Sbjct: 739 RMLVGEAIPNHITYGCFLDHLTKEGNMENALQLHNAMLQGSF--ANTVTYNILIRGYCQI 796

Query: 447 GNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           G    A +L + M  +G+  + +  +  I    K   +D  + ++   + RG+KPD
Sbjct: 797 GKFQEAAKLLDVMIGIGMVPDCITYSTFIYEYCKRGNVDAAMDMWECMLQRGLKPD 852



 Score = 96.3 bits (238), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 141/315 (44%), Gaps = 4/315 (1%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN  + SL    + +  E L + M    +  +++TY+ +I    R    D A  +F +M 
Sbjct: 368 YNSMINSLCKTGKLEEAELLFSVMAERGLNPNDVTYTILIDGFGRRAKLDVAFYYFNKMI 427

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
           + G+     +Y+++++   K GK++    L++  V  G KP    ++ L   + + G   
Sbjct: 428 ECGISATVYSYNSMINCQCKFGKMKMAELLFKEMVDKGLKPTVATYTSLISGYCKDGLVP 487

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               +  EM   G+ PN V +  L+  + +  K   A  LFDEMVE  + P+E T   LI
Sbjct: 488 KAFKLYHEMTGKGIAPNTVTFTALICGLCQINKMAEASKLFDEMVELKILPNEVTYNVLI 547

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
           + + +      A EL + M +     D   Y  L+      G V EA+    D+    + 
Sbjct: 548 EGHCREGNTTRAFELLDEMIKKGLSPDTYTYRPLIAGLCSTGRVSEAKEFINDLH-HKHQ 606

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ-CLGKARRIDDLV 488
           + D   YTA+L  +   G +  A+   +EM   G+ ++++    LI   L +  RI  L 
Sbjct: 607 RLDELCYTALLQGFCKEGRIKEALVARQEMVGRGLQMDLVSYAVLISGALNQNDRI--LF 664

Query: 489 RVFGVSIDRGVKPDD 503
            +      +G++PD+
Sbjct: 665 ELLREMHGKGMQPDN 679



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 142/352 (40%), Gaps = 45/352 (12%)

Query: 199 FGRQFQLIEQLA--NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPD 256
           FGR+ +L       N+M+   I     +Y+++I C  +      A   F+ M   GL P 
Sbjct: 410 FGRRAKLDVAFYYFNKMIECGISATVYSYNSMINCQCKFGKMKMAELLFKEMVDKGLKPT 469

Query: 257 EVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQ 316
             TY++++  Y K G V +   LY      G  P+ + F+ L     +         +  
Sbjct: 470 VATYTSLISGYCKDGLVPKAFKLYHEMTGKGIAPNTVTFTALICGLCQINKMAEASKLFD 529

Query: 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL----------- 365
           EM  L + PN V YN L+E   + G    A  L DEM++ GL+PD  T            
Sbjct: 530 EMVELKILPNEVTYNVLIEGHCREGNTTRAFELLDEMIKKGLSPDTYTYRPLIAGLCSTG 589

Query: 366 ------------------------TALIKIYGKARWAKDALELWERMRENKWPMDFILYN 401
                                   TAL++ + K    K+AL   + M      MD + Y 
Sbjct: 590 RVSEAKEFINDLHHKHQRLDELCYTALLQGFCKEGRIKEALVARQEMVGRGLQMDLVSYA 649

Query: 402 TLLNMCADIGLVEEAER-LFEDMK--LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458
            L++     G + + +R LFE ++       +PDN  YT +++ +   GN+  A E +  
Sbjct: 650 VLIS-----GALNQNDRILFELLREMHGKGMQPDNVIYTILIDGFIKSGNLKKAFEFWYI 704

Query: 459 MSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
           M   G   N +  T L+  L KA  +++   +F   +     P+    GC L
Sbjct: 705 MIGEGYVPNSVTYTALVNGLFKAGYVNEAKLLFKRMLVGEAIPNHITYGCFL 756



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 112/237 (47%), Gaps = 2/237 (0%)

Query: 204 QLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAI 263
           +++ +L  EM    ++ DN+ Y+ +I    +     +A E++  M   G +P+ VTY+A+
Sbjct: 661 RILFELLREMHGKGMQPDNVIYTILIDGFIKSGNLKKAFEFWYIMIGEGYVPNSVTYTAL 720

Query: 264 LDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGV 323
           ++   K+G V E   L++R +     P+ I +        + G+ +    +   M   G 
Sbjct: 721 VNGLFKAGYVNEAKLLFKRMLVGEAIPNHITYGCFLDHLTKEGNMENALQLHNAMLQ-GS 779

Query: 324 QPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALE 383
             N V YN L+    + GK   A  L D M+  G+ PD  T +  I  Y K      A++
Sbjct: 780 FANTVTYNILIRGYCQIGKFQEAAKLLDVMIGIGMVPDCITYSTFIYEYCKRGNVDAAMD 839

Query: 384 LWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
           +WE M +     D +++N L++ C   G ++ A +L  DM L    KP   +Y +++
Sbjct: 840 MWECMLQRGLKPDRVVFNFLIHACCLNGELDRALQLRNDMMLRGL-KPTQSTYHSLM 895



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 66/135 (48%), Gaps = 1/135 (0%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           QL N M+      + +TY+ +I    +   F EA +  + M   G++PD +TYS  +  Y
Sbjct: 770 QLHNAMLQGSFA-NTVTYNILIRGYCQIGKFQEAAKLLDVMIGIGMVPDCITYSTFIYEY 828

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            K G V+  + ++E  +  G KPD + F+ L      +G+ D    +  +M   G++P  
Sbjct: 829 CKRGNVDAAMDMWECMLQRGLKPDRVVFNFLIHACCLNGELDRALQLRNDMMLRGLKPTQ 888

Query: 328 VVYNTLLEAMGKAGK 342
             Y++L+  + +  +
Sbjct: 889 STYHSLMVQLAQRAR 903



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 82/172 (47%), Gaps = 2/172 (1%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L   M+  E   ++ITY   +    +    + A++    M + G   + VTY+ ++  Y 
Sbjct: 736 LFKRMLVGEAIPNHITYGCFLDHLTKEGNMENALQLHNAMLQ-GSFANTVTYNILIRGYC 794

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           + GK +E   L +  +  G  PD I +S     + + G+ D    + + M   G++P+ V
Sbjct: 795 QIGKFQEAAKLLDVMIGIGMVPDCITYSTFIYEYCKRGNVDAAMDMWECMLQRGLKPDRV 854

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL-IKIYGKARWAK 379
           V+N L+ A    G+   A  L ++M+  GL P + T  +L +++  +AR  +
Sbjct: 855 VFNFLIHACCLNGELDRALQLRNDMMLRGLKPTQSTYHSLMVQLAQRARLTQ 906



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/229 (21%), Positives = 91/229 (39%), Gaps = 35/229 (15%)

Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
           DG+  V+  M+  G+ P +   + LL A+ +  K      LFD +V +G+ PD    T +
Sbjct: 173 DGV-LVVNLMRDYGLLPEVRTLSALLNALARIRKFRQVLELFDTLVNAGVKPDCYIYTVV 231

Query: 369 IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM----- 423
           +K   + +    A E+  +   N   +  + YN  +N       V EA  +   +     
Sbjct: 232 VKCLCELKDFNKAKEIINQAEGNGCSLSIVTYNVFINGLCKSKRVWEAVEVKRSLGEKGL 291

Query: 424 --KLSDYCK---------------------------PDNYSYTAMLNIYGSGGNVDNAIE 454
              L  YC                            P   + + ++      G+++ A E
Sbjct: 292 KADLVTYCTLVLGLCRIQEFEVGMEMMDEMIELGYVPSEAAVSGLIEGLIKMGSIEGAFE 351

Query: 455 LFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
           L  ++ +LGV  N+     +I  L K  ++++   +F V  +RG+ P+D
Sbjct: 352 LLNKVGKLGVVPNLFVYNSMINSLCKTGKLEEAELLFSVMAERGLNPND 400


>gi|255555533|ref|XP_002518803.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542184|gb|EEF43728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 775

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 161/348 (46%), Gaps = 19/348 (5%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQ-----FQLIEQLANEMVSNEIELDNITYST 227
           FF W K++  F + T  Y + +  L + R      F L E +++  +    ++  + +ST
Sbjct: 115 FFRWAKTKFGFCLTTESYCLLVHILFYARMYFDANFFLKELISSRRILPGFDVFEVLWST 174

Query: 228 IITCAKRCNLFD-------------EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVE 274
              C     +FD             EA + F RM +  + P   + +A L   AK+GK +
Sbjct: 175 RNVCVPGFGVFDALFSVFIELGMLEEAGQCFSRMTRFRVFPKARSCNAFLYRLAKTGKGD 234

Query: 275 EVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLL 334
                +   V +G       ++++     + GD    + +  +MK +G+ P++V YN+L+
Sbjct: 235 LSNKFFRDMVGAGIAQSVFTYNIMIGYMCKEGDMVTAKSLFHQMKQMGLTPDIVTYNSLI 294

Query: 335 EAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWP 394
           +  GK G    +  LF+EM + G  PD  T  ALI  + K      A      M+ +   
Sbjct: 295 DGYGKLGLLDESFCLFEEMKDVGCEPDVITYNALINCFCKYEQMPKAFHFLHEMKNSGLK 354

Query: 395 MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIE 454
            + + Y+TL++      ++++A +   DM+      P+ ++YT++++     G + +A++
Sbjct: 355 PNVVTYSTLIDALCKEHMLQQAIKFLLDMRRVGL-SPNEFTYTSLIDANCKAGYLSDALK 413

Query: 455 LFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           L +EM ++ V  NV+  T L+  L K  R+ +   +F   I  GV P+
Sbjct: 414 LADEMLQVQVGFNVVTYTTLLDGLCKEGRMMEAEDLFRAMIKAGVTPN 461



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 105/380 (27%), Positives = 184/380 (48%), Gaps = 13/380 (3%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ--LANEMVSNEIELDNITYSTIITC 231
           F+ +K   L P + + YN  +    +G+   L E   L  EM     E D ITY+ +I C
Sbjct: 275 FHQMKQMGLTP-DIVTYNSLIDG--YGKLGLLDESFCLFEEMKDVGCEPDVITYNALINC 331

Query: 232 AKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291
             +     +A  +   M  +GL P+ VTYS ++D   K   +++ +         G  P+
Sbjct: 332 FCKYEQMPKAFHFLHEMKNSGLKPNVVTYSTLIDALCKEHMLQQAIKFLLDMRRVGLSPN 391

Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
              ++ L     ++G       +  EM  + V  N+V Y TLL+ + K G+   A  LF 
Sbjct: 392 EFTYTSLIDANCKAGYLSDALKLADEMLQVQVGFNVVTYTTLLDGLCKEGRMMEAEDLFR 451

Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL-NMCADI 410
            M+++G+TP+ KT TAL+  + K +  ++ALEL + ++E K   D +LY T++  +C+  
Sbjct: 452 AMIKAGVTPNLKTYTALVHGHIKNKRVENALELLKEIKEKKIKPDLLLYGTIIWGLCSQN 511

Query: 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG 470
            L EE E +  +MK     + ++  YT  ++ Y   G    A+ L +EM +LGV + ++ 
Sbjct: 512 KL-EECEFVMSEMKACGI-RANSVIYTIRMDAYFKTGKTVEALNLLQEMCDLGVEVTIVT 569

Query: 471 CTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETS--EDVGKVITC 528
              LI  L K   +++ +  F    D  ++P++ +  C   +  LC+ +  E   K+   
Sbjct: 570 FCVLIDGLCKKGLVEEAIDYFARMADFNLQPNN-VAVCTALIDGLCKNNYIEAAKKLFDE 628

Query: 529 LQQAN--PKLVAFLNLIEDN 546
           +Q  N  P  +A+  LI+ N
Sbjct: 629 MQDKNMVPDKIAYTALIDGN 648



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 77/241 (31%), Positives = 124/241 (51%), Gaps = 1/241 (0%)

Query: 212 EMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG 271
           +MV   I     TY+ +I    +      A   F +M + GL PD VTY++++D Y K G
Sbjct: 242 DMVGAGIAQSVFTYNIMIGYMCKEGDMVTAKSLFHQMKQMGLTPDIVTYNSLIDGYGKLG 301

Query: 272 KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYN 331
            ++E   L+E     G +PD I ++ L   F +        + L EMK+ G++PN+V Y+
Sbjct: 302 LLDESFCLFEEMKDVGCEPDVITYNALINCFCKYEQMPKAFHFLHEMKNSGLKPNVVTYS 361

Query: 332 TLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN 391
           TL++A+ K      A     +M   GL+P+E T T+LI    KA +  DAL+L + M + 
Sbjct: 362 TLIDALCKEHMLQQAIKFLLDMRRVGLSPNEFTYTSLIDANCKAGYLSDALKLADEMLQV 421

Query: 392 KWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDN 451
           +   + + Y TLL+     G + EAE LF  M +     P+  +YTA+++ +     V+N
Sbjct: 422 QVGFNVVTYTTLLDGLCKEGRMMEAEDLFRAM-IKAGVTPNLKTYTALVHGHIKNKRVEN 480

Query: 452 A 452
           A
Sbjct: 481 A 481



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 147/300 (49%), Gaps = 2/300 (0%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           +LA+EM+  ++  + +TY+T++    +     EA + F  M K G+ P+  TY+A++  +
Sbjct: 413 KLADEMLQVQVGFNVVTYTTLLDGLCKEGRMMEAEDLFRAMIKAGVTPNLKTYTALVHGH 472

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
            K+ +VE  L L +       KPD + +  +          +   +V+ EMK+ G++ N 
Sbjct: 473 IKNKRVENALELLKEIKEKKIKPDLLLYGTIIWGLCSQNKLEECEFVMSEMKACGIRANS 532

Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
           V+Y   ++A  K GK   A +L  EM + G+     T   LI    K    ++A++ + R
Sbjct: 533 VIYTIRMDAYFKTGKTVEALNLLQEMCDLGVEVTIVTFCVLIDGLCKKGLVEEAIDYFAR 592

Query: 388 MRE-NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
           M + N  P +  +   L++       +E A++LF++M+  +   PD  +YTA+++     
Sbjct: 593 MADFNLQPNNVAVCTALIDGLCKNNYIEAAKKLFDEMQDKNMV-PDKIAYTALIDGNLKH 651

Query: 447 GNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLC 506
            +   A+ +   MSELG+ +++   T L+  L +   +          I +G+ PD+ LC
Sbjct: 652 KDFQEALNIRSRMSELGMELDLHAYTSLVWGLSQGNLVQQARMFLNEMIGKGIVPDEILC 711



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 108/240 (45%), Gaps = 2/240 (0%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D + Y TII      N  +E       M   G+  + V Y+  +D Y K+GK  E L+L 
Sbjct: 496 DLLLYGTIIWGLCSQNKLEECEFVMSEMKACGIRANSVIYTIRMDAYFKTGKTVEALNLL 555

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN-LVVYNTLLEAMGK 339
           +     G +   + F VL     + G  +        M    +QPN + V   L++ + K
Sbjct: 556 QEMCDLGVEVTIVTFCVLIDGLCKKGLVEEAIDYFARMADFNLQPNNVAVCTALIDGLCK 615

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
                 A+ LFDEM +  + PD+   TALI    K +  ++AL +  RM E    +D   
Sbjct: 616 NNYIEAAKKLFDEMQDKNMVPDKIAYTALIDGNLKHKDFQEALNIRSRMSELGMELDLHA 675

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           Y +L+   +   LV++A R+F +  +     PD      +L  Y   G++D AIEL +E+
Sbjct: 676 YTSLVWGLSQGNLVQQA-RMFLNEMIGKGIVPDEILCIRLLRKYYELGSIDEAIELHDEL 734



 Score = 47.8 bits (112), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 69/164 (42%), Gaps = 36/164 (21%)

Query: 236 NLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAF 295
           N  + A + F+ M    ++PD++ Y+A++D   K    +E L++  R             
Sbjct: 617 NYIEAAKKLFDEMQDKNMVPDKIAYTALIDGNLKHKDFQEALNIRSR------------- 663

Query: 296 SVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVE 355
                                 M  LG++ +L  Y +L+  + +      AR   +EM+ 
Sbjct: 664 ----------------------MSELGMELDLHAYTSLVWGLSQGNLVQQARMFLNEMIG 701

Query: 356 SGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
            G+ PDE     L++ Y +     +A+EL + + + K P+D +L
Sbjct: 702 KGIVPDEILCIRLLRKYYELGSIDEAIELHDELLK-KVPLDELL 744



 Score = 40.0 bits (92), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 25/108 (23%), Positives = 53/108 (49%), Gaps = 1/108 (0%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           F+ ++ +N+ P + I Y   +      + FQ    + + M    +ELD   Y++++    
Sbjct: 626 FDEMQDKNMVP-DKIAYTALIDGNLKHKDFQEALNIRSRMSELGMELDLHAYTSLVWGLS 684

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYE 281
           + NL  +A  +   M   G++PDE+    +L  Y + G ++E + L++
Sbjct: 685 QGNLVQQARMFLNEMIGKGIVPDEILCIRLLRKYYELGSIDEAIELHD 732


>gi|302799689|ref|XP_002981603.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
 gi|300150769|gb|EFJ17418.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
          Length = 609

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 120/507 (23%), Positives = 212/507 (41%), Gaps = 54/507 (10%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           P++ T    +  L   +   K+Y     ++       + + Y+  +       +     +
Sbjct: 7   PNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACE 66

Query: 209 LANEMVSNE-IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           +  EMV+ + +  D +TY++++    R    D A E    M   G+ PD+ T+SA++  +
Sbjct: 67  ILREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGW 126

Query: 268 AKSGKVEEVLSLY------------------------ERGVA--------------SGWK 289
             + KV+E L LY                        ER +                 WK
Sbjct: 127 CNARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQEMEMREDGAWK 186

Query: 290 PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSL 349
           PD + ++ L   F +SG+ +    +L  M+     PN+V Y++LL  + KAG    A  L
Sbjct: 187 PDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDL 246

Query: 350 FDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCAD 409
           F  M   G  P+  T T LI     A     A  L + M     P D + YN LL+    
Sbjct: 247 FRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYNALLDGYCR 306

Query: 410 IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM-SELGVAINV 468
           +G +EEA++LF++M  +  C PD  +YT ++  + +   ++ A  L E M +  G+  +V
Sbjct: 307 LGRIEEAKQLFKEMA-AKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDV 365

Query: 469 MGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITC 528
           +  + ++    +A+R  +        I R V P+      L+    LC+    V   +  
Sbjct: 366 VTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLID--GLCKAGR-VNHAMEV 422

Query: 529 LQQAN-PKLVAFLNLIE-----DNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRN 582
           L+  + P +V +  +IE     D +     + EE  N   +  V     F + +  +CR 
Sbjct: 423 LKNVDKPDVVTYTIVIEGLCGTDRTEEALTLLEEMVNKRVEPSVGT---FNSVIGALCRL 479

Query: 583 RNLNERAHELLYLGTLYGLYPGLHNKT 609
            +++E A +LL     +GL PG+   T
Sbjct: 480 GDMDE-AWKLLVAMAAHGLEPGMVTYT 505



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 91/394 (23%), Positives = 175/394 (44%), Gaps = 14/394 (3%)

Query: 148 IPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIE 207
           +P+  T  + L  L       ++   F  + S+   P   + Y   +  L    +     
Sbjct: 221 VPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVP-NVVTYTTLIHGLCAAHKVDAAR 279

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
            L +EM +     D ++Y+ ++    R    +EA + F+ M     +PD +TY+ ++  +
Sbjct: 280 LLMDEMTATCCPADTVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGF 339

Query: 268 AKSGKVEEVLSLYER-GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
             + ++EE   L E    A+G  PD + +S++   +  +  +      +QEM +  V PN
Sbjct: 340 CNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPN 399

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
            V Y++L++ + KAG+   A     E++++   PD  T T +I+        ++AL L E
Sbjct: 400 AVTYSSLIDGLCKAGRVNHAM----EVLKNVDKPDVVTYTIVIEGLCGTDRTEEALTLLE 455

Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
            M   +       +N+++     +G ++EA +L   M      +P   +YT +L  +   
Sbjct: 456 EMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGL-EPGMVTYTTLLEGFSRT 514

Query: 447 GNVDNAIELFEEM----SELGVAINVM---GCTCLIQCLGKARRIDDLVRVFGVSIDRGV 499
           G ++ A ELFE M     +   A N++     + LI+ L KAR ID  + V      R  
Sbjct: 515 GRMEIAYELFEVMRRKAKKSSSAANLVPEQAFSALIRGLCKAREIDKAMAVVEELRSREC 574

Query: 500 KPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN 533
           +P +  C  ++  +     +E+ GK+I  + +  
Sbjct: 575 EPAEEDCLAIVDGLLRAGRTEEAGKLINSISKVG 608



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 68/135 (50%), Gaps = 1/135 (0%)

Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPM-DFILYNTLLNMCADIGLVEEA 416
           + P+E+T   ++    KAR    A E+ + MR+ K    D + Y+T++N     G ++ A
Sbjct: 5   VAPNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRA 64

Query: 417 ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
             +  +M   D   PD  +YT++++     G +D A E+  EM   GV  +    + LI 
Sbjct: 65  CEILREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALIT 124

Query: 477 CLGKARRIDDLVRVF 491
               AR++D+ ++++
Sbjct: 125 GWCNARKVDEALKLY 139


>gi|255556711|ref|XP_002519389.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541456|gb|EEF43006.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 634

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 142/315 (45%), Gaps = 18/315 (5%)

Query: 205 LIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAIL 264
           L E+  NEM+   + L+ +       C      F++A      M   G +PD  TYS ++
Sbjct: 70  LAERAYNEMLEMGVVLNKVNVCNFTRCLCCIGKFEKAYNVIREMMSKGFIPDSSTYSKVI 129

Query: 265 DVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQ 324
                + KVE+   L++    +G  PD   ++ L   F + G  +  R    EM+  G  
Sbjct: 130 GYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNWFDEMQQDGCA 189

Query: 325 PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384
           PN+V Y  L+ A  K  K   A  +F+ M+ +G  P+  T TALI  + KA   + A ++
Sbjct: 190 PNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALIDGHCKAGETEKACQI 249

Query: 385 WERMRENKWPM-----------------DFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           + RM+ +K  +                 + + Y  L++       V+EA  L E M L  
Sbjct: 250 YARMKNDKVDIPDVDIYFRIVDSELKEPNVVTYGALVDGLCKAHKVKEARDLLETMSLEG 309

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
            C+P+   Y A+++ +   G +D A E+F +M   G + NV   + LI  L K +R+D  
Sbjct: 310 -CEPNQIIYDALIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTYSSLIDKLFKDKRLDLA 368

Query: 488 VRVFGVSIDRGVKPD 502
           ++V    ++    P+
Sbjct: 369 LKVLTKMLENSCAPN 383



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 83/346 (23%), Positives = 164/346 (47%), Gaps = 24/346 (6%)

Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS 261
           +F+    +  EM+S     D+ TYS +I      +  ++A + F+ M + G+ PD  TY+
Sbjct: 102 KFEKAYNVIREMMSKGFIPDSSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYT 161

Query: 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
            +LD + K G +E+  + ++     G  P+ + ++ L   + ++        + + M S 
Sbjct: 162 TLLDRFCKVGLIEQARNWFDEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSN 221

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM----------------VESGLT-PDEKT 364
           G  PN+V Y  L++   KAG+   A  ++  M                V+S L  P+  T
Sbjct: 222 GCVPNIVTYTALIDGHCKAGETEKACQIYARMKNDKVDIPDVDIYFRIVDSELKEPNVVT 281

Query: 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
             AL+    KA   K+A +L E M       + I+Y+ L++    +G ++EA+ +F  M 
Sbjct: 282 YGALVDGLCKAHKVKEARDLLETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKM- 340

Query: 425 LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484
           L   C P+ Y+Y+++++       +D A+++  +M E   A NV+  T ++  L K  + 
Sbjct: 341 LGHGCSPNVYTYSSLIDKLFKDKRLDLALKVLTKMLENSCAPNVVIYTEMVDGLCKVGKT 400

Query: 485 DDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQ 530
           D+  R+  +  ++G  P+      +++  ++ +     G+V  CL+
Sbjct: 401 DEAYRLMLMMEEKGCYPN------VVTYTAMIDGFGKAGRVDRCLE 440



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 81/344 (23%), Positives = 145/344 (42%), Gaps = 15/344 (4%)

Query: 172 FFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITC 231
            +F  + S+   P   + Y   +  L    + +    L   M     E + I Y  +I  
Sbjct: 265 IYFRIVDSELKEP-NVVTYGALVDGLCKAHKVKEARDLLETMSLEGCEPNQIIYDALIDG 323

Query: 232 AKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291
             +    DEA E F +M   G  P+  TYS+++D   K  +++  L +  + + +   P+
Sbjct: 324 FCKVGKLDEAQEVFTKMLGHGCSPNVYTYSSLIDKLFKDKRLDLALKVLTKMLENSCAPN 383

Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
            + ++ +     + G  D    ++  M+  G  PN+V Y  +++  GKAG+      L  
Sbjct: 384 VVIYTEMVDGLCKVGKTDEAYRLMLMMEEKGCYPNVVTYTAMIDGFGKAGRVDRCLELLQ 443

Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL-----NM 406
            M   G  P+  T   LI     A    DA +L E M++  WP    +Y  ++       
Sbjct: 444 LMTSKGCAPNFITYRVLINHCCAAGLLDDAHKLLEEMKQTYWPKHIGMYRKVIEGFSHEF 503

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
            A +GL+ E   L ED  +     P    Y  +++ +   G ++ A+EL EE+S    A 
Sbjct: 504 VASLGLLAE---LSEDGSV-----PILPVYKLLIDNFIKAGRLEMALELHEELSSFSAAY 555

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
                + LI+ L  A ++D   +++     RG  P+  +  CL+
Sbjct: 556 QNTYVS-LIESLTLACKVDKAFKLYSDMTRRGFVPELSMLVCLI 598



 Score = 89.4 bits (220), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 106/250 (42%), Gaps = 42/250 (16%)

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTL---------- 333
           +  G  P P+ F+ L   +  SGDY     +L++M   G QP  VVYN L          
Sbjct: 3   ITEGCYPSPMIFNSLVHAYCRSGDYFYAYKLLKKMVICGYQPGYVVYNILIGGICSTEDL 62

Query: 334 --LEAMGKA-----------------------------GKPGLARSLFDEMVESGLTPDE 362
             +E +G A                             GK   A ++  EM+  G  PD 
Sbjct: 63  PSMEVIGLAERAYNEMLEMGVVLNKVNVCNFTRCLCCIGKFEKAYNVIREMMSKGFIPDS 122

Query: 363 KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED 422
            T + +I     A   + A +L++ M+ N    D   Y TLL+    +GL+E+A   F++
Sbjct: 123 STYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNWFDE 182

Query: 423 MKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKAR 482
           M+  D C P+  +YTA+++ Y     +  A E+FE M   G   N++  T LI    KA 
Sbjct: 183 MQ-QDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALIDGHCKAG 241

Query: 483 RIDDLVRVFG 492
             +   +++ 
Sbjct: 242 ETEKACQIYA 251


>gi|384251704|gb|EIE25181.1| TPR-like protein [Coccomyxa subellipsoidea C-169]
          Length = 905

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 150/333 (45%), Gaps = 43/333 (12%)

Query: 150 HQPTRENALLI--LNSLKFWQKSYFFFNWIKSQNL-FPMETIF----YNVTMKSLRFGRQ 202
           H  +R  ALL+  L+      ++   F W+++ +   P+ ++     Y   +    + + 
Sbjct: 166 HFDSRATALLLKDLSKAGLGFRAVEIFEWLRNLDANHPLASLCDVYTYTAMISMCIYQQD 225

Query: 203 FQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSA 262
                 LA EM    IE +  TY+ ++    +C     A++ +  M + G  P+ VTY+ 
Sbjct: 226 VDRAMDLAKEMRVRNIERNVHTYTALMNVCIKCGNCPLALDTYNHMRQDGACPNVVTYNT 285

Query: 263 ILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG 322
           ++DVY K G       L+E+G+                             VL  MK+ G
Sbjct: 286 LIDVYGKMG-------LWEQGIK----------------------------VLTLMKTEG 310

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382
           V+P L  YNTL+ A    G+P  A +++  M++ G +P+  T  ALI  YGKA      +
Sbjct: 311 VEPVLRTYNTLIIACNMCGQPREAMAVYKRMLDEGYSPNATTYNALISAYGKAGQLDKVM 370

Query: 383 ELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNI 442
           E+++ M         I Y++L++ C   G  E A  LF +M   + C P+  +Y +++  
Sbjct: 371 EVFQEMVHKGCERSVITYSSLISACEKAGQWELALELFNEMA-GEGCIPNTVTYNSLITA 429

Query: 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLI 475
              G   + A E+FE+M + G   +V+  T LI
Sbjct: 430 CAQGAQWEKASEVFEQMQKGGCTPDVVTFTALI 462



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 102/190 (53%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           TY+T+I     C    EA+  ++RM   G  P+  TY+A++  Y K+G++++V+ +++  
Sbjct: 317 TYNTLIIACNMCGQPREAMAVYKRMLDEGYSPNATTYNALISAYGKAGQLDKVMEVFQEM 376

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
           V  G +   I +S L     ++G ++    +  EM   G  PN V YN+L+ A  +  + 
Sbjct: 377 VHKGCERSVITYSSLISACEKAGQWELALELFNEMAGEGCIPNTVTYNSLITACAQGAQW 436

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
             A  +F++M + G TPD  T TALI  Y K    + AL  +E+MR  +   D I++N +
Sbjct: 437 EKASEVFEQMQKGGCTPDVVTFTALISSYEKGGQWRRALGAYEQMRLQRCKPDAIVFNAI 496

Query: 404 LNMCADIGLV 413
           ++   + G++
Sbjct: 497 IDTLWETGVI 506



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 107/245 (43%), Gaps = 3/245 (1%)

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
           D D    + +EM+   ++ N+  Y  L+    K G   LA   ++ M + G  P+  T  
Sbjct: 225 DVDRAMDLAKEMRVRNIERNVHTYTALMNVCIKCGNCPLALDTYNHMRQDGACPNVVTYN 284

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
            LI +YGK    +  +++   M+          YNTL+  C   G   EA  +++ M L 
Sbjct: 285 TLIDVYGKMGLWEQGIKVLTLMKTEGVEPVLRTYNTLIIACNMCGQPREAMAVYKRM-LD 343

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
           +   P+  +Y A+++ YG  G +D  +E+F+EM   G   +V+  + LI    KA + + 
Sbjct: 344 EGYSPNATTYNALISAYGKAGQLDKVMEVFQEMVHKGCERSVITYSSLISACEKAGQWEL 403

Query: 487 LVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAFLNLIE 544
            + +F      G  P+      L++  +     E   +V   +Q+    P +V F  LI 
Sbjct: 404 ALELFNEMAGEGCIPNTVTYNSLITACAQGAQWEKASEVFEQMQKGGCTPDVVTFTALIS 463

Query: 545 DNSTG 549
               G
Sbjct: 464 SYEKG 468



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/213 (21%), Positives = 98/213 (46%), Gaps = 16/213 (7%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           YN  + +     Q   + ++  EMV    E   ITYS++I+  ++   ++ A+E F  M 
Sbjct: 353 YNALISAYGKAGQLDKVMEVFQEMVHKGCERSVITYSSLISACEKAGQWELALELFNEMA 412

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
             G +P+ VTY++++   A+  + E+   ++E+    G  PD + F+ L   + + G + 
Sbjct: 413 GEGCIPNTVTYNSLITACAQGAQWEKASEVFEQMQKGGCTPDVVTFTALISSYEKGGQWR 472

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR---SLFDEMVESGLTPDEKTLT 366
                 ++M+    +P+ +V+N +++ + + G     R   +LF + VE G         
Sbjct: 473 RALGAYEQMRLQRCKPDAIVFNAIIDTLWETGVIWAQRKALALFQQAVEDGH-------- 524

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
                + + RW     +  E    +++P+  +L
Sbjct: 525 -----FKQQRWDTSGAQRAEARTRSRFPLALLL 552



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 62/120 (51%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
            I Y+  + +     Q++L  +L NEM       + +TY+++IT   +   +++A E FE
Sbjct: 385 VITYSSLISACEKAGQWELALELFNEMAGEGCIPNTVTYNSLITACAQGAQWEKASEVFE 444

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
           +M K G  PD VT++A++  Y K G+    L  YE+      KPD I F+ +     E+G
Sbjct: 445 QMQKGGCTPDVVTFTALISSYEKGGQWRRALGAYEQMRLQRCKPDAIVFNAIIDTLWETG 504



 Score = 49.3 bits (116), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 42/200 (21%), Positives = 89/200 (44%), Gaps = 17/200 (8%)

Query: 99  KPRRSVLSLQRQKRSTYSYNPRVRDLKLFAR-KLNDCDNTEEAFLRAITEIPHQPTRENA 157
           +PR ++   +R     YS N    +  + A  K    D   E F     E+ H+   E +
Sbjct: 330 QPREAMAVYKRMLDEGYSPNATTYNALISAYGKAGQLDKVMEVF----QEMVHKGC-ERS 384

Query: 158 LLILNSL-------KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLA 210
           ++  +SL         W+ +   FN +  +   P  T+ YN  + +   G Q++   ++ 
Sbjct: 385 VITYSSLISACEKAGQWELALELFNEMAGEGCIP-NTVTYNSLITACAQGAQWEKASEVF 443

Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
            +M       D +T++ +I+  ++   +  A+  +E+M      PD + ++AI+D   ++
Sbjct: 444 EQMQKGGCTPDVVTFTALISSYEKGGQWRRALGAYEQMRLQRCKPDAIVFNAIIDTLWET 503

Query: 271 GKV---EEVLSLYERGVASG 287
           G +    + L+L+++ V  G
Sbjct: 504 GVIWAQRKALALFQQAVEDG 523


>gi|242039015|ref|XP_002466902.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
 gi|241920756|gb|EER93900.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
          Length = 653

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 93/368 (25%), Positives = 163/368 (44%), Gaps = 40/368 (10%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + YN  +K L   +++  ++ L  EMV      + +T++T+I    R  LF+   +  
Sbjct: 224 DVVSYNAVLKGLCMAKRWGRVQDLMEEMVRVGCPPNVVTFNTLIGYLCRNGLFERVHQVL 283

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP--------------- 290
            +M   G  PD   Y+ +LD   K G +E    + +R  + G KP               
Sbjct: 284 AQMVDHGCTPDIRMYATVLDGVCKEGHLEVAHEILDRMPSYGLKPNVVCYNTVLKGLCSA 343

Query: 291 --------------------DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
                               D + F++L   F ++G    +  +L++M   G  P+++ Y
Sbjct: 344 ERWEQAEELLAEMFDNDCPLDDVTFNILVDFFCQNGLVYRVIELLEQMLEHGCVPDVITY 403

Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA-RWAKDALELWERMR 389
            T++    K G    A  L   M   G  P+  + T ++K    A RW  DA +L  +M 
Sbjct: 404 TTVINGFCKEGLIDEAVMLLKSMAACGCRPNTISYTIVLKGLCSAERWV-DAEDLMSQMI 462

Query: 390 ENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNV 449
           E     + + +NT++N     GLVE+A  L + M L+  C PD  SY+ +++  G  G  
Sbjct: 463 EQGCSPNPVTFNTVINFLCKKGLVEQAIELLKQMLLNG-CSPDLISYSTVIDGLGKAGKT 521

Query: 450 DNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCL 509
           D A+EL   M   G++ N +  + +   L K  RI+ ++++F    D  ++ D  L   +
Sbjct: 522 DEALELLNVMVNKGMSPNTIIYSSIASALSKEGRINRVIQMFDNIQDVTIRSDAVLYNAV 581

Query: 510 LSVVSLCE 517
           +S  SLC+
Sbjct: 582 IS--SLCK 587



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 77/312 (24%), Positives = 152/312 (48%), Gaps = 2/312 (0%)

Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
           + ++   + + S  L P   + YN  +K L    +++  E+L  EM  N+  LD++T++ 
Sbjct: 312 EVAHEILDRMPSYGLKP-NVVCYNTVLKGLCSAERWEQAEELLAEMFDNDCPLDDVTFNI 370

Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
           ++    +  L    IE  E+M + G +PD +TY+ +++ + K G ++E + L +   A G
Sbjct: 371 LVDFFCQNGLVYRVIELLEQMLEHGCVPDVITYTTVINGFCKEGLIDEAVMLLKSMAACG 430

Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
            +P+ I+++++ K    +  +     ++ +M   G  PN V +NT++  + K G    A 
Sbjct: 431 CRPNTISYTIVLKGLCSAERWVDAEDLMSQMIEQGCSPNPVTFNTVINFLCKKGLVEQAI 490

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
            L  +M+ +G +PD  + + +I   GKA    +ALEL   M       + I+Y+++ +  
Sbjct: 491 ELLKQMLLNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASAL 550

Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
           +  G +    ++F++++     + D   Y A+++     G  D AIE    M   G   N
Sbjct: 551 SKEGRINRVIQMFDNIQ-DVTIRSDAVLYNAVISSLCKRGGTDRAIEFLAYMVSSGCMPN 609

Query: 468 VMGCTCLIQCLG 479
               T LI+ L 
Sbjct: 610 ESTYTILIRGLA 621



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 124/265 (46%), Gaps = 2/265 (0%)

Query: 239 DEAIEWFERMYKT-GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
           DEA+     +  + G  PD V+Y+A+L     + +   V  L E  V  G  P+ + F+ 
Sbjct: 206 DEALRLLRDLPTSFGCDPDVVSYNAVLKGLCMAKRWGRVQDLMEEMVRVGCPPNVVTFNT 265

Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
           L      +G ++ +  VL +M   G  P++ +Y T+L+ + K G   +A  + D M   G
Sbjct: 266 LIGYLCRNGLFERVHQVLAQMVDHGCTPDIRMYATVLDGVCKEGHLEVAHEILDRMPSYG 325

Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417
           L P+      ++K    A   + A EL   M +N  P+D + +N L++     GLV    
Sbjct: 326 LKPNVVCYNTVLKGLCSAERWEQAEELLAEMFDNDCPLDDVTFNILVDFFCQNGLVYRVI 385

Query: 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
            L E M L   C PD  +YT ++N +   G +D A+ L + M+  G   N +  T +++ 
Sbjct: 386 ELLEQM-LEHGCVPDVITYTTVINGFCKEGLIDEAVMLLKSMAACGCRPNTISYTIVLKG 444

Query: 478 LGKARRIDDLVRVFGVSIDRGVKPD 502
           L  A R  D   +    I++G  P+
Sbjct: 445 LCSAERWVDAEDLMSQMIEQGCSPN 469



 Score =  102 bits (254), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 65/302 (21%), Positives = 142/302 (47%), Gaps = 1/302 (0%)

Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS 261
             ++  ++ + M S  ++ + + Y+T++        +++A E    M+      D+VT++
Sbjct: 310 HLEVAHEILDRMPSYGLKPNVVCYNTVLKGLCSAERWEQAEELLAEMFDNDCPLDDVTFN 369

Query: 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
            ++D + ++G V  V+ L E+ +  G  PD I ++ +   F + G  D    +L+ M + 
Sbjct: 370 ILVDFFCQNGLVYRVIELLEQMLEHGCVPDVITYTTVINGFCKEGLIDEAVMLLKSMAAC 429

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
           G +PN + Y  +L+ +  A +   A  L  +M+E G +P+  T   +I    K    + A
Sbjct: 430 GCRPNTISYTIVLKGLCSAERWVDAEDLMSQMIEQGCSPNPVTFNTVINFLCKKGLVEQA 489

Query: 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
           +EL ++M  N    D I Y+T+++     G  +EA  L   M ++    P+   Y+++ +
Sbjct: 490 IELLKQMLLNGCSPDLISYSTVIDGLGKAGKTDEALELLNVM-VNKGMSPNTIIYSSIAS 548

Query: 442 IYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
                G ++  I++F+ + ++ +  + +    +I  L K    D  +      +  G  P
Sbjct: 549 ALSKEGRINRVIQMFDNIQDVTIRSDAVLYNAVISSLCKRGGTDRAIEFLAYMVSSGCMP 608

Query: 502 DD 503
           ++
Sbjct: 609 NE 610



 Score = 96.3 bits (238), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 100/202 (49%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
           TI Y + +K L    ++   E L ++M+      + +T++T+I    +  L ++AIE  +
Sbjct: 435 TISYTIVLKGLCSAERWVDAEDLMSQMIEQGCSPNPVTFNTVINFLCKKGLVEQAIELLK 494

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
           +M   G  PD ++YS ++D   K+GK +E L L    V  G  P+ I +S +     + G
Sbjct: 495 QMLLNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSKEG 554

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
             + +  +   ++ + ++ + V+YN ++ ++ K G    A      MV SG  P+E T T
Sbjct: 555 RINRVIQMFDNIQDVTIRSDAVLYNAVISSLCKRGGTDRAIEFLAYMVSSGCMPNESTYT 614

Query: 367 ALIKIYGKARWAKDALELWERM 388
            LI+      + K+A E+   +
Sbjct: 615 ILIRGLASEGFVKEAQEMLTEL 636



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/279 (22%), Positives = 123/279 (44%), Gaps = 37/279 (13%)

Query: 181 NLFPMETIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFD 239
           N  P++ + +N+ +    + G  +++IE L  +M+ +    D ITY+T+I    +  L D
Sbjct: 359 NDCPLDDVTFNILVDFFCQNGLVYRVIE-LLEQMLEHGCVPDVITYTTVINGFCKEGLID 417

Query: 240 EAI-----------------------------EWFE------RMYKTGLMPDEVTYSAIL 264
           EA+                              W +      +M + G  P+ VT++ ++
Sbjct: 418 EAVMLLKSMAACGCRPNTISYTIVLKGLCSAERWVDAEDLMSQMIEQGCSPNPVTFNTVI 477

Query: 265 DVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQ 324
           +   K G VE+ + L ++ + +G  PD I++S +    G++G  D    +L  M + G+ 
Sbjct: 478 NFLCKKGLVEQAIELLKQMLLNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMS 537

Query: 325 PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384
           PN ++Y+++  A+ K G+      +FD + +  +  D     A+I    K      A+E 
Sbjct: 538 PNTIIYSSIASALSKEGRINRVIQMFDNIQDVTIRSDAVLYNAVISSLCKRGGTDRAIEF 597

Query: 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
              M  +    +   Y  L+   A  G V+EA+ +  ++
Sbjct: 598 LAYMVSSGCMPNESTYTILIRGLASEGFVKEAQEMLTEL 636



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 71/306 (23%), Positives = 120/306 (39%), Gaps = 47/306 (15%)

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKS-------GKVEEVLSLYERGVASGWKPDP 292
           +A+   + M + G  P    Y  IL+              V  +  L+ RG A       
Sbjct: 133 DALSVLDEMRRRGCAPIPPMYHVILEAACSRGGGGGFRSAVRVLQDLHGRGCALDVGNCN 192

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEM-KSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
           +   VL  +  + G  D    +L+++  S G  P++V YN +L+ +  A + G  + L +
Sbjct: 193 L---VLNAVCDQGGSVDEALRLLRDLPTSFGCDPDVVSYNAVLKGLCMAKRWGRVQDLME 249

Query: 352 EMVESGLTPDEKTLTAL----------------------------IKIYG-------KAR 376
           EMV  G  P+  T   L                            I++Y        K  
Sbjct: 250 EMVRVGCPPNVVTFNTLIGYLCRNGLFERVHQVLAQMVDHGCTPDIRMYATVLDGVCKEG 309

Query: 377 WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY 436
             + A E+ +RM       + + YNT+L         E+AE L  +M  +D C  D+ ++
Sbjct: 310 HLEVAHEILDRMPSYGLKPNVVCYNTVLKGLCSAERWEQAEELLAEMFDND-CPLDDVTF 368

Query: 437 TAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496
             +++ +   G V   IEL E+M E G   +V+  T +I    K   ID+ V +      
Sbjct: 369 NILVDFFCQNGLVYRVIELLEQMLEHGCVPDVITYTTVINGFCKEGLIDEAVMLLKSMAA 428

Query: 497 RGVKPD 502
            G +P+
Sbjct: 429 CGCRPN 434



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 80/190 (42%), Gaps = 4/190 (2%)

Query: 320 SLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWA- 378
           S+ V PN   Y  ++ A+   G+   A S+ DEM   G  P       +++         
Sbjct: 108 SVPVPPNAYTYFPVVRALCARGRIADALSVLDEMRRRGCAPIPPMYHVILEAACSRGGGG 167

Query: 379 --KDALELWERMRENKWPMDFILYNTLLN-MCADIGLVEEAERLFEDMKLSDYCKPDNYS 435
             + A+ + + +      +D    N +LN +C   G V+EA RL  D+  S  C PD  S
Sbjct: 168 GFRSAVRVLQDLHGRGCALDVGNCNLVLNAVCDQGGSVDEALRLLRDLPTSFGCDPDVVS 227

Query: 436 YTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSI 495
           Y A+L             +L EEM  +G   NV+    LI  L +    + + +V    +
Sbjct: 228 YNAVLKGLCMAKRWGRVQDLMEEMVRVGCPPNVVTFNTLIGYLCRNGLFERVHQVLAQMV 287

Query: 496 DRGVKPDDRL 505
           D G  PD R+
Sbjct: 288 DHGCTPDIRM 297


>gi|449449098|ref|XP_004142302.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g01740-like [Cucumis sativus]
 gi|449521427|ref|XP_004167731.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g01740-like [Cucumis sativus]
          Length = 585

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 143/276 (51%), Gaps = 9/276 (3%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           F  + S ++ P  T++ ++     + G     I+ + N+M   +I+LD   Y+ II+   
Sbjct: 254 FEKMLSASILPNCTVYTSIIDGHFKKGNVDDAIKYI-NQMFDRDIKLDLTAYTVIISGFH 312

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
           R   FD+++E  E + K GL+PD +  +AI+DV+ K+G ++E L+ Y+  +A G++ D +
Sbjct: 313 RVGRFDKSMEAAEYVAKNGLLPDRIILTAIMDVHFKAGNIKEALNAYKILLAKGFEADVV 372

Query: 294 AFSVLGKMFGESGDY-DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
             S L     + G   +  RY+++E        N ++Y   ++A+ K G    A  +  E
Sbjct: 373 TLSALMDGLSKHGYLQEARRYLVKE------NANEILYTVFIDALCKEGNLDDAEKMIKE 426

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M E+G  PD+   T+ I    K      A  + +RM +     D + Y++L+   A+ GL
Sbjct: 427 MSEAGFVPDKFVYTSWIAELCKQGNLLKAFMVKKRMVQEHVEPDLLTYSSLIGGLAEKGL 486

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
           + EA+++F+DM L+    PD  SY  ++  Y + GN
Sbjct: 487 MIEAKQVFDDM-LNKGITPDFVSYDILIRGYHNQGN 521



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 92/375 (24%), Positives = 172/375 (45%), Gaps = 24/375 (6%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           ++++II+   R      A   F  M + G  PD V+Y+++LD Y  S ++++   L  R 
Sbjct: 58  SFNSIISFFCRSGNVKFAEHIFISMSRFGCSPDIVSYNSLLDGYCSSYQIQKACFLVNRV 117

Query: 284 VASGW-KPDPIAFSVLGKMFG------ESGDYDGI--RYVLQEMKSLGVQPNLVVYNTLL 334
                 +PD + F++L   F       E+  Y G+  +Y L         P++V Y T +
Sbjct: 118 RGCELNRPDLVMFNILFNGFAKVYMKNEAFMYFGLMWKYCL---------PSIVTYGTFV 168

Query: 335 EAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWP 394
           +   K G   +   +F +M++ G+ P+    ++LI  Y KA     A E +ERM+E    
Sbjct: 169 DMFCKMGDMKMGNRMFLDMMKVGIVPNLVVFSSLIDGYCKAGSLDVAFEYFERMKECSVR 228

Query: 395 MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIE 454
            +   Y+TL++ C+  G++  A+ LFE M LS    P+   YT++++ +   GNVD+AI+
Sbjct: 229 PNEFTYSTLIDGCSKHGMLARADSLFEKM-LSASILPNCTVYTSIIDGHFKKGNVDDAIK 287

Query: 455 LFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSV-V 513
              +M +  + +++   T +I    +  R D  +         G+ PD  +   ++ V  
Sbjct: 288 YINQMFDRDIKLDLTAYTVIISGFHRVGRFDKSMEAAEYVAKNGLLPDRIILTAIMDVHF 347

Query: 514 SLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFC 573
                 E +      L +     V  L+ + D  +    ++E  R ++K+   +A     
Sbjct: 348 KAGNIKEALNAYKILLAKGFEADVVTLSALMDGLSKHGYLQEARRYLVKE---NANEILY 404

Query: 574 NCLID-ICRNRNLNE 587
              ID +C+  NL++
Sbjct: 405 TVFIDALCKEGNLDD 419



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 140/287 (48%), Gaps = 20/287 (6%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           + +S++I    +    D A E+FERM +  + P+E TYS ++D  +K G +    SL+E+
Sbjct: 197 VVFSSLIDGYCKAGSLDVAFEYFERMKECSVRPNEFTYSTLIDGCSKHGMLARADSLFEK 256

Query: 283 GVASGWKPDPIAF-SVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG 341
            +++   P+   + S++   F +    D I+Y+  +M    ++ +L  Y  ++    + G
Sbjct: 257 MLSASILPNCTVYTSIIDGHFKKGNVDDAIKYI-NQMFDRDIKLDLTAYTVIISGFHRVG 315

Query: 342 KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYN 401
           +   +    + + ++GL PD   LTA++ ++ KA   K+AL  ++ +    +  D +  +
Sbjct: 316 RFDKSMEAAEYVAKNGLLPDRIILTAIMDVHFKAGNIKEALNAYKILLAKGFEADVVTLS 375

Query: 402 TLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYS---YTAMLNIYGSGGNVDNAIELFEE 458
            L++  +  G ++EA R         Y   +N +   YT  ++     GN+D+A ++ +E
Sbjct: 376 ALMDGLSKHGYLQEARR---------YLVKENANEILYTVFIDALCKEGNLDDAEKMIKE 426

Query: 459 MSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVS---IDRGVKPD 502
           MSE G   +    T  I  L K     +L++ F V    +   V+PD
Sbjct: 427 MSEAGFVPDKFVYTSWIAELCKQ---GNLLKAFMVKKRMVQEHVEPD 470



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 61/265 (23%), Positives = 124/265 (46%), Gaps = 12/265 (4%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           D + ++ +     +  + +EA  +F  M+K  L P  VTY   +D++ K G ++    ++
Sbjct: 126 DLVMFNILFNGFAKVYMKNEAFMYFGLMWKYCL-PSIVTYGTFVDMFCKMGDMKMGNRMF 184

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
              +  G  P+ + FS L   + ++G  D      + MK   V+PN   Y+TL++   K 
Sbjct: 185 LDMMKVGIVPNLVVFSSLIDGYCKAGSLDVAFEYFERMKECSVRPNEFTYSTLIDGCSKH 244

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G    A SLF++M+ + + P+    T++I  + K     DA++   +M +    +D   Y
Sbjct: 245 GMLARADSLFEKMLSASILPNCTVYTSIIDGHFKKGNVDDAIKYINQMFDRDIKLDLTAY 304

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCK-----PDNYSYTAMLNIYGSGGNVDNAIEL 455
             +++    +G      R  + M+ ++Y       PD    TA+++++   GN+  A+  
Sbjct: 305 TVIISGFHRVG------RFDKSMEAAEYVAKNGLLPDRIILTAIMDVHFKAGNIKEALNA 358

Query: 456 FEEMSELGVAINVMGCTCLIQCLGK 480
           ++ +   G   +V+  + L+  L K
Sbjct: 359 YKILLAKGFEADVVTLSALMDGLSK 383



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/282 (21%), Positives = 132/282 (46%), Gaps = 6/282 (2%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           +  TYST+I    +  +   A   FE+M    ++P+   Y++I+D + K G V++ +   
Sbjct: 230 NEFTYSTLIDGCSKHGMLARADSLFEKMLSASILPNCTVYTSIIDGHFKKGNVDDAIKYI 289

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
            +      K D  A++V+   F   G +D      + +   G+ P+ ++   +++   KA
Sbjct: 290 NQMFDRDIKLDLTAYTVIISGFHRVGRFDKSMEAAEYVAKNGLLPDRIILTAIMDVHFKA 349

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G    A + +  ++  G   D  TL+AL+    K  + ++A     +   N+     ILY
Sbjct: 350 GNIKEALNAYKILLAKGFEADVVTLSALMDGLSKHGYLQEARRYLVKENANE-----ILY 404

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
              ++     G +++AE++ ++M  + +  PD + YT+ +      GN+  A  + + M 
Sbjct: 405 TVFIDALCKEGNLDDAEKMIKEMSEAGFV-PDKFVYTSWIAELCKQGNLLKAFMVKKRMV 463

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           +  V  +++  + LI  L +   + +  +VF   +++G+ PD
Sbjct: 464 QEHVEPDLLTYSSLIGGLAEKGLMIEAKQVFDDMLNKGITPD 505



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 103/242 (42%), Gaps = 3/242 (1%)

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           EA+++   + +T   P   T + +L     SG       L    ++ G+ P P +F+ + 
Sbjct: 4   EALQYLAHLRRTFRFPTPFTCNKLLHSLINSGCGHLSAKLLFHFLSKGYTPHPSSFNSII 63

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
             F  SG+     ++   M   G  P++V YN+LL+    + +   A  L + +    L 
Sbjct: 64  SFFCRSGNVKFAEHIFISMSRFGCSPDIVSYNSLLDGYCSSYQIQKACFLVNRVRGCELN 123

Query: 360 -PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAER 418
            PD      L   + K     +A   +  M +   P   + Y T ++M   +G ++   R
Sbjct: 124 RPDLVMFNILFNGFAKVYMKNEAFMYFGLMWKYCLP-SIVTYGTFVDMFCKMGDMKMGNR 182

Query: 419 LFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL 478
           +F DM +     P+   ++++++ Y   G++D A E FE M E  V  N    + LI   
Sbjct: 183 MFLDM-MKVGIVPNLVVFSSLIDGYCKAGSLDVAFEYFERMKECSVRPNEFTYSTLIDGC 241

Query: 479 GK 480
            K
Sbjct: 242 SK 243


>gi|255549794|ref|XP_002515948.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544853|gb|EEF46368.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 706

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/352 (23%), Positives = 159/352 (45%), Gaps = 33/352 (9%)

Query: 183 FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
           + ++   +N+ + +L   ++     ++  +M     E D  TY+ +I    R    DE++
Sbjct: 73  YTLDIFAFNMLLDALAKDQKVDQAFKVFEDMKKKHCEPDEYTYTIMIRMTGRIGKLDESL 132

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
             FE M   G  P+ + Y+ ++   A S  V++ + L+ + +    +P+   +SV+  + 
Sbjct: 133 ALFEEMLNKGCSPNLIAYNTMIQALANSRMVDKTILLFSKMMEKNCRPNEFTYSVILTLL 192

Query: 303 GESGDYDGI----------------RYVLQEMKSLGVQP-------NLVVYN-------- 331
              G    +                 Y+++ +  LG          N+  Y+        
Sbjct: 193 AAEGQLHKLDKVVELSRKYMNRSIYAYLVRTLNKLGHASEAHRLFCNMWSYHDRGDRDAC 252

Query: 332 -TLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
            ++LE++  AGK   A  L  ++ E G+  D      +    G+ +      +L+E+M+ 
Sbjct: 253 LSMLESLCNAGKTVEAIDLLGKIHEKGINTDTIMYNTVFTALGRLKQISHLYDLYEKMKL 312

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
           +    D   YN L++     G V EA ++FE+++ SD CKPD  SY +++N  G  G++D
Sbjct: 313 DGPLPDIFTYNILISSFGRAGKVYEAIKIFEELENSD-CKPDIISYNSLINCLGKNGDLD 371

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            A   F EM E G+  +V+  + LI+C GK  +++   R+F   +  G  P+
Sbjct: 372 EAHIRFREMQEKGLNPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCFPN 423



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 107/204 (52%), Gaps = 1/204 (0%)

Query: 200 GRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVT 259
           G+  + I+ L  ++    I  D I Y+T+ T   R        + +E+M   G +PD  T
Sbjct: 263 GKTVEAIDLLG-KIHEKGINTDTIMYNTVFTALGRLKQISHLYDLYEKMKLDGPLPDIFT 321

Query: 260 YSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMK 319
           Y+ ++  + ++GKV E + ++E    S  KPD I+++ L    G++GD D      +EM+
Sbjct: 322 YNILISSFGRAGKVYEAIKIFEELENSDCKPDIISYNSLINCLGKNGDLDEAHIRFREMQ 381

Query: 320 SLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAK 379
             G+ P++V Y+TL+E  GK  K  +A  LFDEM+  G  P+  T   L+    ++    
Sbjct: 382 EKGLNPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCFPNIVTYNILLDCLERSGRTA 441

Query: 380 DALELWERMRENKWPMDFILYNTL 403
           +A++L+ ++++     D I Y+ L
Sbjct: 442 EAVDLYAKLKQQGLTPDSITYSVL 465



 Score =  102 bits (254), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 93/381 (24%), Positives = 172/381 (45%), Gaps = 41/381 (10%)

Query: 159 LILNSLKFWQK---SYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLA--NEM 213
           ++L++L   QK   ++  F  +K ++  P E   Y  T+     GR  +L E LA   EM
Sbjct: 82  MLLDALAKDQKVDQAFKVFEDMKKKHCEPDE---YTYTIMIRMTGRIGKLDESLALFEEM 138

Query: 214 VSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG-- 271
           ++     + I Y+T+I       + D+ I  F +M +    P+E TYS IL + A  G  
Sbjct: 139 LNKGCSPNLIAYNTMIQALANSRMVDKTILLFSKMMEKNCRPNEFTYSVILTLLAAEGQL 198

Query: 272 -KVEEVLSLYERGVASGWKPDPI-AFSVLGKM------------FGESGDYDGIRYVLQ- 316
            K+++V+ L  + +        +   + LG              + + GD D    +L+ 
Sbjct: 199 HKLDKVVELSRKYMNRSIYAYLVRTLNKLGHASEAHRLFCNMWSYHDRGDRDACLSMLES 258

Query: 317 ---------------EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD 361
                          ++   G+  + ++YNT+  A+G+  +      L+++M   G  PD
Sbjct: 259 LCNAGKTVEAIDLLGKIHEKGINTDTIMYNTVFTALGRLKQISHLYDLYEKMKLDGPLPD 318

Query: 362 EKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFE 421
             T   LI  +G+A    +A++++E +  +    D I YN+L+N     G ++EA   F 
Sbjct: 319 IFTYNILISSFGRAGKVYEAIKIFEELENSDCKPDIISYNSLINCLGKNGDLDEAHIRFR 378

Query: 422 DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
           +M+      PD  +Y+ ++  +G    V+ A  LF+EM   G   N++    L+ CL ++
Sbjct: 379 EMQ-EKGLNPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCFPNIVTYNILLDCLERS 437

Query: 482 RRIDDLVRVFGVSIDRGVKPD 502
            R  + V ++     +G+ PD
Sbjct: 438 GRTAEAVDLYAKLKQQGLTPD 458



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 137/323 (42%), Gaps = 33/323 (10%)

Query: 212 EMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG 271
           EM      LD   ++ ++    +    D+A + FE M K    PDE TY+ ++ +  + G
Sbjct: 67  EMKRKGYTLDIFAFNMLLDALAKDQKVDQAFKVFEDMKKKHCEPDEYTYTIMIRMTGRIG 126

Query: 272 KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYN 331
           K++E L+L+E  +  G  P+ IA++ + +    S   D    +  +M     +PN   Y+
Sbjct: 127 KLDESLALFEEMLNKGCSPNLIAYNTMIQALANSRMVDKTILLFSKMMEKNCRPNEFTYS 186

Query: 332 ---TLLEAMG-----------------------------KAGKPGLARSLFDEMVESGLT 359
              TLL A G                             K G    A  LF  M      
Sbjct: 187 VILTLLAAEGQLHKLDKVVELSRKYMNRSIYAYLVRTLNKLGHASEAHRLFCNMWSYHDR 246

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
            D     ++++    A    +A++L  ++ E     D I+YNT+      +  +     L
Sbjct: 247 GDRDACLSMLESLCNAGKTVEAIDLLGKIHEKGINTDTIMYNTVFTALGRLKQISHLYDL 306

Query: 420 FEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479
           +E MKL D   PD ++Y  +++ +G  G V  AI++FEE+       +++    LI CLG
Sbjct: 307 YEKMKL-DGPLPDIFTYNILISSFGRAGKVYEAIKIFEELENSDCKPDIISYNSLINCLG 365

Query: 480 KARRIDDLVRVFGVSIDRGVKPD 502
           K   +D+    F    ++G+ PD
Sbjct: 366 KNGDLDEAHIRFREMQEKGLNPD 388



 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 102/201 (50%), Gaps = 3/201 (1%)

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           EAI+   ++++ G+  D + Y+ +     +  ++  +  LYE+    G  PD   +++L 
Sbjct: 267 EAIDLLGKIHEKGINTDTIMYNTVFTALGRLKQISHLYDLYEKMKLDGPLPDIFTYNILI 326

Query: 300 KMFGESGD-YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
             FG +G  Y+ I+ + +E+++   +P+++ YN+L+  +GK G    A   F EM E GL
Sbjct: 327 SSFGRAGKVYEAIK-IFEELENSDCKPDIISYNSLINCLGKNGDLDEAHIRFREMQEKGL 385

Query: 359 TPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAER 418
            PD  T + LI+ +GK    + A  L++ M       + + YN LL+     G   EA  
Sbjct: 386 NPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCFPNIVTYNILLDCLERSGRTAEAVD 445

Query: 419 LFEDMKLSDYCKPDNYSYTAM 439
           L+  +K      PD+ +Y+ +
Sbjct: 446 LYAKLKQQG-LTPDSITYSVL 465



 Score = 92.4 bits (228), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 74/330 (22%), Positives = 151/330 (45%), Gaps = 8/330 (2%)

Query: 217 EIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV 276
           +++++  TY  ++    R    D     +  M + G   D   ++ +LD  AK  KV++ 
Sbjct: 37  DLKMNGYTYKCLVQAYLRSCDSDNGFRVYLEMKRKGYTLDIFAFNMLLDALAKDQKVDQA 96

Query: 277 LSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA 336
             ++E       +PD   ++++ +M G  G  D    + +EM + G  PNL+ YNT+++A
Sbjct: 97  FKVFEDMKKKHCEPDEYTYTIMIRMTGRIGKLDESLALFEEMLNKGCSPNLIAYNTMIQA 156

Query: 337 MGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE-NKWPM 395
           +  +        LF +M+E    P+E T + ++ +      A+  L   +++ E ++  M
Sbjct: 157 LANSRMVDKTILLFSKMMEKNCRPNEFTYSVILTLLA----AEGQLHKLDKVVELSRKYM 212

Query: 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIEL 455
           +  +Y  L+     +G   EA RLF +M  S + + D  +  +ML    + G    AI+L
Sbjct: 213 NRSIYAYLVRTLNKLGHASEAHRLFCNM-WSYHDRGDRDACLSMLESLCNAGKTVEAIDL 271

Query: 456 FEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSL 515
             ++ E G+  + +    +   LG+ ++I  L  ++      G  PD      L+S    
Sbjct: 272 LGKIHEKGINTDTIMYNTVFTALGRLKQISHLYDLYEKMKLDGPLPDIFTYNILISSFGR 331

Query: 516 CETSEDVGKVITCLQQAN--PKLVAFLNLI 543
                +  K+   L+ ++  P ++++ +LI
Sbjct: 332 AGKVYEAIKIFEELENSDCKPDIISYNSLI 361



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 95/186 (51%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           +TI YN    +L   +Q   +  L  +M  +    D  TY+ +I+   R     EAI+ F
Sbjct: 283 DTIMYNTVFTALGRLKQISHLYDLYEKMKLDGPLPDIFTYNILISSFGRAGKVYEAIKIF 342

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
           E +  +   PD ++Y+++++   K+G ++E    +      G  PD + +S L + FG++
Sbjct: 343 EELENSDCKPDIISYNSLINCLGKNGDLDEAHIRFREMQEKGLNPDVVTYSTLIECFGKT 402

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
              +    +  EM + G  PN+V YN LL+ + ++G+   A  L+ ++ + GLTPD  T 
Sbjct: 403 DKVEMACRLFDEMLAEGCFPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSITY 462

Query: 366 TALIKI 371
           + L ++
Sbjct: 463 SVLERL 468


>gi|255660836|gb|ACU25587.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
          Length = 418

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 143/300 (47%), Gaps = 2/300 (0%)

Query: 164 LKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNI 223
           LK+++  + F+  I     +P    F+N+ M       + +L + + +E+    +    +
Sbjct: 114 LKYFKLVWGFYKEILECG-YPASLYFFNILMHRFCKEGEMRLAQSVFDEITKWGLRPSVV 172

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           +++T++    R    DE       M+ +G+ PD  TYS +++   K  K+ +   L+   
Sbjct: 173 SFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMNDANELFGEM 232

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
           + +G  P+ + F+ L     ++G  D      +EM   G  P+L+ YNTL+  + K G  
Sbjct: 233 IGNGLVPNGVTFTTLIDGHCKTGSIDLAMETYKEMLRQGFSPDLITYNTLIYGLCKKGDL 292

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
             A+ L DEM   GL PD+ T T LI    K    + AL   +RM +    +D + Y  L
Sbjct: 293 KQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETALYYRKRMIKENIRLDDVAYTAL 352

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           ++     G   +AE++  +M LS   KPDN +YT ++N +   G+V    +L +EM   G
Sbjct: 353 ISGLCREGQSVDAEKMLREM-LSVGLKPDNGTYTMIINEFCKKGDVKTGSKLLKEMQRDG 411



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 127/260 (48%), Gaps = 1/260 (0%)

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
           +++ + + G       ++ ++  + K G++    S+++     G +P  ++F+ L   + 
Sbjct: 123 FYKEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDEITKWGLRPSVVSFNTLMNGYI 182

Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
             GD D    +   M + GVQP++  Y+ L+  + K  K   A  LF EM+ +GL P+  
Sbjct: 183 RLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMNDANELFGEMIGNGLVPNGV 242

Query: 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
           T T LI  + K      A+E ++ M    +  D I YNTL+      G +++A+ L ++M
Sbjct: 243 TFTTLIDGHCKTGSIDLAMETYKEMLRQGFSPDLITYNTLIYGLCKKGDLKQAQDLIDEM 302

Query: 424 KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483
            +    KPD  +YT +++     G+++ A+   + M +  + ++ +  T LI  L +  +
Sbjct: 303 SMKGL-KPDKITYTTLIDGSCKEGDLETALYYRKRMIKENIRLDDVAYTALISGLCREGQ 361

Query: 484 IDDLVRVFGVSIDRGVKPDD 503
             D  ++    +  G+KPD+
Sbjct: 362 SVDAEKMLREMLSVGLKPDN 381



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 67/149 (44%)

Query: 212 EMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG 271
           EM+      D ITY+T+I    +     +A +  + M   GL PD++TY+ ++D   K G
Sbjct: 266 EMLRQGFSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEG 325

Query: 272 KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYN 331
            +E  L   +R +    + D +A++ L       G       +L+EM S+G++P+   Y 
Sbjct: 326 DLETALYYRKRMIKENIRLDDVAYTALISGLCREGQSVDAEKMLREMLSVGLKPDNGTYT 385

Query: 332 TLLEAMGKAGKPGLARSLFDEMVESGLTP 360
            ++    K G       L  EM   G  P
Sbjct: 386 MIINEFCKKGDVKTGSKLLKEMQRDGHVP 414



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 71/146 (48%)

Query: 183 FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
           F  + I YN  +  L      +  + L +EM    ++ D ITY+T+I  + +    + A+
Sbjct: 272 FSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAL 331

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
            + +RM K  +  D+V Y+A++    + G+  +   +    ++ G KPD   ++++   F
Sbjct: 332 YYRKRMIKENIRLDDVAYTALISGLCREGQSVDAEKMLREMLSVGLKPDNGTYTMIINEF 391

Query: 303 GESGDYDGIRYVLQEMKSLGVQPNLV 328
            + GD      +L+EM+  G  P +V
Sbjct: 392 CKKGDVKTGSKLLKEMQRDGHVPCVV 417


>gi|359487410|ref|XP_002273156.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g53170-like [Vitis vinifera]
          Length = 538

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/350 (24%), Positives = 160/350 (45%), Gaps = 7/350 (2%)

Query: 112 RSTYSYNPRVRDLKLFARKLNDCDNTEEAFL--RAITEIPHQPTRENALLILNSLKF--- 166
           R  + Y PR +        L  C   E+A L    +     +PT +    ++++      
Sbjct: 119 RKQHWYEPRCQTYTKLLMMLGKCKQPEQASLLFEVMLSEGLRPTLDVYTALVSAYGHSGQ 178

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
             K++     +KS +    +   Y++ +K      +F LIE++  EM    IE   +TY+
Sbjct: 179 LDKAFCTVEDMKSVSDCKPDVYTYSILIKCCTTLGRFDLIERIFTEMSYLGIECSTVTYN 238

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTG-LMPDEVTYSAILDVYAKSGKVEEVLSLYERGVA 285
           TII    + ++F+        M ++G  +PD  T ++ +  Y  SG++E++   Y+    
Sbjct: 239 TIIDGYGKADMFELMESSLTEMIESGTCLPDIFTLNSFIWAYGNSGQIEKMEKWYDEFQL 298

Query: 286 SGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGL 345
            G +PD   F++L + +G++  Y+ +  V++ MK     P +V +N ++E  G+ G    
Sbjct: 299 MGIRPDIKTFNILIRSYGKACMYEKMVSVMEFMKKRFYSPTIVTFNIVIEMFGRVGNIEK 358

Query: 346 ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405
               F +M   G+ P+  T  +L+  Y KA + K    +  ++  +   +D   +N +L+
Sbjct: 359 MEEFFLKMKHQGVKPNSITYCSLVSAYSKAGYLKKVDSILRQIENSDVTLDTPFFNCVLS 418

Query: 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIEL 455
                G VE    LF  MK    CKPDN ++  M+  Y + G ++ A  L
Sbjct: 419 AYGQAGDVERMGELFLVMK-ERKCKPDNITFATMIQAYNAQGMIEAAQNL 467



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 140/317 (44%), Gaps = 38/317 (11%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYE-R 282
           TY+ ++    +C   ++A   FE M   GL P    Y+A++  Y  SG++++     E  
Sbjct: 130 TYTKLLMMLGKCKQPEQASLLFEVMLSEGLRPTLDVYTALVSAYGHSGQLDKAFCTVEDM 189

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
              S  KPD   +S+L K     G +D I  +  EM  LG++ + V YNT+++  GKA  
Sbjct: 190 KSVSDCKPDVYTYSILIKCCTTLGRFDLIERIFTEMSYLGIECSTVTYNTIIDGYGKADM 249

Query: 343 PGLARSLFDEMVESG------------------------------------LTPDEKTLT 366
             L  S   EM+ESG                                    + PD KT  
Sbjct: 250 FELMESSLTEMIESGTCLPDIFTLNSFIWAYGNSGQIEKMEKWYDEFQLMGIRPDIKTFN 309

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
            LI+ YGKA   +  + + E M++  +    + +N ++ M   +G +E+ E  F  MK  
Sbjct: 310 ILIRSYGKACMYEKMVSVMEFMKKRFYSPTIVTFNIVIEMFGRVGNIEKMEEFFLKMKHQ 369

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
              KP++ +Y ++++ Y   G +     +  ++    V ++     C++   G+A  ++ 
Sbjct: 370 G-VKPNSITYCSLVSAYSKAGYLKKVDSILRQIENSDVTLDTPFFNCVLSAYGQAGDVER 428

Query: 487 LVRVFGVSIDRGVKPDD 503
           +  +F V  +R  KPD+
Sbjct: 429 MGELFLVMKERKCKPDN 445



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 80/367 (21%), Positives = 146/367 (39%), Gaps = 40/367 (10%)

Query: 232 AKRCNLFDEAIEWFERMYKTGLM-PDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
           A R N ++ A++ F  + K     P   TY+ +L +  K  + E+   L+E  ++ G +P
Sbjct: 102 AIRENRYESALKIFGLLRKQHWYEPRCQTYTKLLMMLGKCKQPEQASLLFEVMLSEGLRP 161

Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG-VQPNLVVYNTLLEAMGKAGKPGLARSL 349
               ++ L   +G SG  D     +++MKS+   +P++  Y+ L++     G+  L   +
Sbjct: 162 TLDVYTALVSAYGHSGQLDKAFCTVEDMKSVSDCKPDVYTYSILIKCCTTLGRFDLIERI 221

Query: 350 FDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCAD 409
           F EM   G+     T   +I  YGKA    D  EL E                       
Sbjct: 222 FTEMSYLGIECSTVTYNTIIDGYGKA----DMFELMES---------------------- 255

Query: 410 IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVM 469
             L E  E        S  C PD ++  + +  YG+ G ++   + ++E   +G+  ++ 
Sbjct: 256 -SLTEMIE--------SGTCLPDIFTLNSFIWAYGNSGQIEKMEKWYDEFQLMGIRPDIK 306

Query: 470 GCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCL 529
               LI+  GKA   + +V V      R   P       ++ +       E + +    +
Sbjct: 307 TFNILIRSYGKACMYEKMVSVMEFMKKRFYSPTIVTFNIVIEMFGRVGNIEKMEEFFLKM 366

Query: 530 --QQANPKLVAFLNLIEDNS-TGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLN 586
             Q   P  + + +L+   S  G+    +     I++++V    PF NC++         
Sbjct: 367 KHQGVKPNSITYCSLVSAYSKAGYLKKVDSILRQIENSDVTLDTPFFNCVLSAYGQAGDV 426

Query: 587 ERAHELL 593
           ER  EL 
Sbjct: 427 ERMGELF 433



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/132 (22%), Positives = 69/132 (52%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           +T++ +I    R    ++  E+F +M   G+ P+ +TY +++  Y+K+G +++V S+  +
Sbjct: 341 VTFNIVIEMFGRVGNIEKMEEFFLKMKHQGVKPNSITYCSLVSAYSKAGYLKKVDSILRQ 400

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
              S    D   F+ +   +G++GD + +  +   MK    +P+ + + T+++A    G 
Sbjct: 401 IENSDVTLDTPFFNCVLSAYGQAGDVERMGELFLVMKERKCKPDNITFATMIQAYNAQGM 460

Query: 343 PGLARSLFDEMV 354
              A++L   M+
Sbjct: 461 IEAAQNLEVNMI 472


>gi|255553476|ref|XP_002517779.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543051|gb|EEF44586.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 486

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/366 (24%), Positives = 166/366 (45%), Gaps = 12/366 (3%)

Query: 102 RSVLSLQRQKRSTYSYNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPH----QPTRENA 157
           +S L +    R  + Y PR +        L  C   EEA  R + E+      +PT +  
Sbjct: 109 KSALKIFELLRKQHWYEPRCQTYTKLLMMLGKCRQPEEA--RLLFEVMQTEGLRPTIDVY 166

Query: 158 LLILNSLK---FWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMV 214
             ++++        K++   + +KS +    +   Y+V +       +F LI ++ +EM 
Sbjct: 167 TALVSAYGESGLLAKAFSTVDEMKSVSDCKPDVYTYSVLINICTKLHRFDLIGRILSEMS 226

Query: 215 SNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTG-LMPDEVTYSAILDVYAKSGKV 273
              +E   +T++TII    +  +F E       M + G  +PD  T+++++  Y  SG++
Sbjct: 227 YLGVECSTVTFNTIINGYGKAKMFREMENSLTNMIEIGNSVPDLFTFNSVIGAYGNSGRI 286

Query: 274 EEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTL 333
           E++   Y      G  PD   F++L K +G++G Y+ I  V++ MK     P +V YN +
Sbjct: 287 EKMEKWYNEFQLMGISPDIKTFNILIKSYGKAGMYEKINSVIEFMKKRFFPPTVVTYNII 346

Query: 334 LEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKW 393
           +E  G+AG        F  M   G+ P+  T  +L+  Y KA        +  ++  +  
Sbjct: 347 IETFGRAGDIENMDEYFKTMKHLGMKPNAITYCSLVSAYSKAGLLMKVNSILRQVENSDV 406

Query: 394 PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAI 453
            +D   +N ++N     G V++   LF +M+  + C PDN ++  M+  Y  G  +  A 
Sbjct: 407 VLDTTFFNCIINAYGQAGDVDKMAELFLEMRERE-CMPDNVTFATMIQAY-RGQGMTEAA 464

Query: 454 ELFEEM 459
           +  E+M
Sbjct: 465 QALEKM 470



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 136/317 (42%), Gaps = 38/317 (11%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS-LYER 282
           TY+ ++    +C   +EA   FE M   GL P    Y+A++  Y +SG + +  S + E 
Sbjct: 130 TYTKLLMMLGKCRQPEEARLLFEVMQTEGLRPTIDVYTALVSAYGESGLLAKAFSTVDEM 189

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQ------------------ 324
              S  KPD   +SVL  +  +   +D I  +L EM  LGV+                  
Sbjct: 190 KSVSDCKPDVYTYSVLINICTKLHRFDLIGRILSEMSYLGVECSTVTFNTIINGYGKAKM 249

Query: 325 ------------------PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
                             P+L  +N+++ A G +G+       ++E    G++PD KT  
Sbjct: 250 FREMENSLTNMIEIGNSVPDLFTFNSVIGAYGNSGRIEKMEKWYNEFQLMGISPDIKTFN 309

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
            LIK YGKA   +    + E M++  +P   + YN ++      G +E  +  F+ MK  
Sbjct: 310 ILIKSYGKAGMYEKINSVIEFMKKRFFPPTVVTYNIIIETFGRAGDIENMDEYFKTMKHL 369

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
              KP+  +Y ++++ Y   G +     +  ++    V ++     C+I   G+A  +D 
Sbjct: 370 G-MKPNAITYCSLVSAYSKAGLLMKVNSILRQVENSDVVLDTTFFNCIINAYGQAGDVDK 428

Query: 487 LVRVFGVSIDRGVKPDD 503
           +  +F    +R   PD+
Sbjct: 429 MAELFLEMRERECMPDN 445



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/317 (22%), Positives = 144/317 (45%), Gaps = 8/317 (2%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFP---METIFYNVTMKSLRFGRQFQL 205
           P   T    L++L   +  +++   F  ++++ L P   + T   +   +S    + F  
Sbjct: 126 PRCQTYTKLLMMLGKCRQPEEARLLFEVMQTEGLRPTIDVYTALVSAYGESGLLAKAFST 185

Query: 206 IEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
           ++++ +    ++ + D  TYS +I    + + FD        M   G+    VT++ I++
Sbjct: 186 VDEMKS---VSDCKPDVYTYSVLINICTKLHRFDLIGRILSEMSYLGVECSTVTFNTIIN 242

Query: 266 VYAKSGKVEEVLSLYERGVASGWK-PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQ 324
            Y K+    E+ +     +  G   PD   F+ +   +G SG  + +     E + +G+ 
Sbjct: 243 GYGKAKMFREMENSLTNMIEIGNSVPDLFTFNSVIGAYGNSGRIEKMEKWYNEFQLMGIS 302

Query: 325 PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384
           P++  +N L+++ GKAG      S+ + M +    P   T   +I+ +G+A   ++  E 
Sbjct: 303 PDIKTFNILIKSYGKAGMYEKINSVIEFMKKRFFPPTVVTYNIIIETFGRAGDIENMDEY 362

Query: 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYG 444
           ++ M+      + I Y +L++  +  GL+ +   +   ++ SD    D   +  ++N YG
Sbjct: 363 FKTMKHLGMKPNAITYCSLVSAYSKAGLLMKVNSILRQVENSDVVL-DTTFFNCIINAYG 421

Query: 445 SGGNVDNAIELFEEMSE 461
             G+VD   ELF EM E
Sbjct: 422 QAGDVDKMAELFLEMRE 438



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 66/321 (20%), Positives = 130/321 (40%), Gaps = 7/321 (2%)

Query: 264 LDVYAKSGKVEEVLSLYERGVASGW-KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG 322
           LD   K  + +  L ++E      W +P    ++ L  M G+    +  R + + M++ G
Sbjct: 99  LDDAIKERRWKSALKIFELLRKQHWYEPRCQTYTKLLMMLGKCRQPEEARLLFEVMQTEG 158

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVE-SGLTPDEKTLTALIKIYGKARWAKDA 381
           ++P + VY  L+ A G++G    A S  DEM   S   PD  T + LI I  K       
Sbjct: 159 LRPTIDVYTALVSAYGESGLLAKAFSTVDEMKSVSDCKPDVYTYSVLINICTKLHRFDLI 218

Query: 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
             +   M         + +NT++N      +  E E    +M       PD +++ +++ 
Sbjct: 219 GRILSEMSYLGVECSTVTFNTIINGYGKAKMFREMENSLTNMIEIGNSVPDLFTFNSVIG 278

Query: 442 IYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
            YG+ G ++   + + E   +G++ ++     LI+  GKA   + +  V      R   P
Sbjct: 279 AYGNSGRIEKMEKWYNEFQLMGISPDIKTFNILIKSYGKAGMYEKINSVIEFMKKRFFPP 338

Query: 502 DDRLCGCLLSVVSLCETSEDVGKVITCLQQ--ANPKLVAFLNLIEDNSTG--FENIKEEF 557
                  ++         E++ +    ++     P  + + +L+   S       +    
Sbjct: 339 TVVTYNIIIETFGRAGDIENMDEYFKTMKHLGMKPNAITYCSLVSAYSKAGLLMKVNSIL 398

Query: 558 RNVIKDTEVDARRPFCNCLID 578
           R V ++++V     F NC+I+
Sbjct: 399 RQV-ENSDVVLDTTFFNCIIN 418


>gi|15222409|ref|NP_176529.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75205330|sp|Q9SH26.1|PP102_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63400
 gi|6633845|gb|AAF19704.1|AC008047_11 F2K11.22 [Arabidopsis thaliana]
 gi|332195974|gb|AEE34095.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 577

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 101/413 (24%), Positives = 183/413 (44%), Gaps = 75/413 (18%)

Query: 161 LNSLKFWQKSYFFFNWIKSQNLFPMETIF-YNVTMKSLRFGRQFQLIEQLANEMVSNEIE 219
           L+S+K       F   +KS+   P+ +IF +N  + ++   ++F L+  L  +M    I 
Sbjct: 61  LHSMKLDDAIGLFGGMVKSR---PLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGIS 117

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
            +  TY+ +I C  R +    A+    +M K G  P  VT S++L+ Y    ++ + ++L
Sbjct: 118 HNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVAL 177

Query: 280 YERGVASGWKPDPIAFSVL-----------------GKM-----------FG-------E 304
            ++ V  G++PD I F+ L                  +M           +G       +
Sbjct: 178 VDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCK 237

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
            GD D    +L +M++  ++ N+V+Y+T+++++ K      A +LF EM   G+ P+  T
Sbjct: 238 RGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVIT 297

Query: 365 LTALIK-IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
            ++LI  +    RW+ DA  L   M E K   + + +N L++     G + EAE+L+++M
Sbjct: 298 YSSLISCLCNYERWS-DASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEM 356

Query: 424 ----------------------------------KLSDYCKPDNYSYTAMLNIYGSGGNV 449
                                              +S  C P+  +Y  ++N +     +
Sbjct: 357 IKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRI 416

Query: 450 DNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           D  +ELF EMS+ G+  N +  T LI    +AR  D+   VF   +  GV P+
Sbjct: 417 DEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPN 469



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/321 (27%), Positives = 149/321 (46%), Gaps = 3/321 (0%)

Query: 151 QPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPME--TIFYNVTMKSLRFGRQFQLIEQ 208
           QP      +++N L         FN +       +E   + Y+  + SL   R       
Sbjct: 222 QPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALN 281

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  EM +  +  + ITYS++I+C      + +A      M +  + P+ VT++A++D + 
Sbjct: 282 LFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFV 341

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           K GK+ E   LY+  +     PD   +S L   F      D  +++ + M S    PN+V
Sbjct: 342 KEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVV 401

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            YNTL+    KA +      LF EM + GL  +  T T LI  + +AR   +A  ++++M
Sbjct: 402 TYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQM 461

Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
             +    + + YNTLL+     G +E+A  +FE ++ S   +P  Y+Y  M+      G 
Sbjct: 462 VSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKM-EPTIYTYNIMIEGMCKAGK 520

Query: 449 VDNAIELFEEMSELGVAINVM 469
           V++  +LF  +S  GV  +V+
Sbjct: 521 VEDGWDLFCSLSLKGVKPDVI 541



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 114/218 (52%)

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
           E+L +EM+   I+ D  TYS++I      +  DEA   FE M      P+ VTY+ +++ 
Sbjct: 350 EKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLING 409

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
           + K+ +++E + L+      G   + + ++ L   F ++ D D  + V ++M S GV PN
Sbjct: 410 FCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPN 469

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
           ++ YNTLL+ + K GK   A  +F+ +  S + P   T   +I+   KA   +D  +L+ 
Sbjct: 470 IMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFC 529

Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
            +       D I+YNT+++     GL EEA+ LF  M+
Sbjct: 530 SLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMR 567



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 137/287 (47%), Gaps = 3/287 (1%)

Query: 260 YSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMK 319
           Y  IL     S K+++ + L+   V S   P    F+ L     +   +D +  + ++M+
Sbjct: 53  YREILRNGLHSMKLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQ 112

Query: 320 SLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAK 379
            LG+  NL  YN L+    +  +  LA +L  +M++ G  P   TL++L+  Y   +   
Sbjct: 113 RLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRIS 172

Query: 380 DALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAM 439
           DA+ L ++M E  +  D I + TL++         EA  L + M +   C+P+  +Y  +
Sbjct: 173 DAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRM-VQRGCQPNLVTYGVV 231

Query: 440 LNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGV 499
           +N     G++D A  L  +M    +  NV+  + +I  L K R  DD + +F    ++GV
Sbjct: 232 VNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGV 291

Query: 500 KPDDRLCGCLLSVVSLCETSEDVGKVITCL--QQANPKLVAFLNLIE 544
           +P+      L+S +   E   D  ++++ +  ++ NP +V F  LI+
Sbjct: 292 RPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALID 338



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 95/191 (49%), Gaps = 1/191 (0%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
           F  + S++ FP   + YN  +      ++     +L  EM    +  + +TY+T+I    
Sbjct: 388 FELMISKDCFP-NVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFF 446

Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
           +    D A   F++M   G+ P+ +TY+ +LD   K+GK+E+ + ++E    S  +P   
Sbjct: 447 QARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIY 506

Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
            ++++ +   ++G  +    +   +   GV+P++++YNT++    + G    A +LF +M
Sbjct: 507 TYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKM 566

Query: 354 VESGLTPDEKT 364
            E G  PD  T
Sbjct: 567 REDGPLPDSGT 577


>gi|222628656|gb|EEE60788.1| hypothetical protein OsJ_14372 [Oryza sativa Japonica Group]
          Length = 748

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 142/287 (49%), Gaps = 1/287 (0%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           TY+ +I C +R +  + A+  F R+ +TGL PD  +Y+ ++D ++K G+V++   L+ + 
Sbjct: 124 TYNILIDCYRRMHRPELALAVFGRLLRTGLGPDVCSYNTLIDGFSKEGEVDKAYELFYKM 183

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
           +     PD + ++ L     ++ +      VL++M   G++PN   YN+L+     AG  
Sbjct: 184 IEQSVSPDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIYGYSTAGMW 243

Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
             +  +F EM  SGL P      + I    +    K+A ++++ M       + I Y+TL
Sbjct: 244 KESVRVFKEMSSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKPNIISYSTL 303

Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
           L+  A  G       L  ++ +S    P++  +  ++N Y   G +D A+ +FE+M   G
Sbjct: 304 LHGYAAEGCFANMNSLV-NLMVSKGIVPNHRFFNILINAYARCGMMDKAMLIFEDMQNKG 362

Query: 464 VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
           +  + +    +I  L +  R+DD +  F   +D GV P + +  CL+
Sbjct: 363 MIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYRCLI 409



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 86/377 (22%), Positives = 164/377 (43%), Gaps = 36/377 (9%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           K+Y  F  +  Q++ P + + YN  +  L   ++    E++  +MV   I  +N TY+++
Sbjct: 175 KAYELFYKMIEQSVSP-DVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSL 233

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
           I       ++ E++  F+ M  +GL+P  V  ++ +    +  +++E   +++  V  G 
Sbjct: 234 IYGYSTAGMWKESVRVFKEMSSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGP 293

Query: 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348
           KP+ I++S L   +   G +  +  ++  M S G+ PN   +N L+ A  + G    A  
Sbjct: 294 KPNIISYSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFNILINAYARCGMMDKAML 353

Query: 349 LFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCA 408
           +F++M   G+ PD  T   +I    +     DAL  +  M +   P    +Y  L+  C 
Sbjct: 354 IFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYRCLIQGCC 413

Query: 409 DIGLVEEAERLFEDMKLSDYCKPDNYSYTAML-NIYGSG--------------------- 446
           + G + +A+ L  +M   D   P    +++++ N++  G                     
Sbjct: 414 NHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLFKEGRVAEGKDIMDLMVQTGQRPNV 473

Query: 447 -------------GNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGV 493
                        GN++ A  L + M+ +G+  N      L+    K  RIDD + VF  
Sbjct: 474 VTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRD 533

Query: 494 SIDRGVKPDDRLCGCLL 510
            + +GVKP   L   +L
Sbjct: 534 MLHKGVKPTSVLYNIIL 550



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 142/291 (48%), Gaps = 2/291 (0%)

Query: 187 TIF-YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           TI+ YN+ +   R   + +L   +   ++   +  D  +Y+T+I    +    D+A E F
Sbjct: 121 TIYTYNILIDCYRRMHRPELALAVFGRLLRTGLGPDVCSYNTLIDGFSKEGEVDKAYELF 180

Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
            +M +  + PD VTY++++D   K+ ++ +   + E+ V +G +P+   ++ L   +  +
Sbjct: 181 YKMIEQSVSPDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIYGYSTA 240

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
           G +     V +EM S G+ P +V  N+ + A+ +  +   A+ +FD MV  G  P+  + 
Sbjct: 241 GMWKESVRVFKEMSSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKPNIISY 300

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
           + L+  Y       +   L   M       +   +N L+N  A  G++++A  +FEDM+ 
Sbjct: 301 STLLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFNILINAYARCGMMDKAMLIFEDMQ- 359

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
           +    PD  ++  +++     G +D+A+  F  M ++GV  +     CLIQ
Sbjct: 360 NKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYRCLIQ 410



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 98/463 (21%), Positives = 189/463 (40%), Gaps = 35/463 (7%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
           P+  T  + +   ++   W++S   F  + S  L P   +  N  + +L    + +  + 
Sbjct: 225 PNNKTYNSLIYGYSTAGMWKESVRVFKEMSSSGLIPC-VVNCNSFIHALCRHNRIKEAKD 283

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           + + MV    + + I+YST++        F         M   G++P+   ++ +++ YA
Sbjct: 284 IFDSMVLKGPKPNIISYSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFNILINAYA 343

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           + G +++ + ++E     G  PD + F+ +       G  D   +    M  +GV P+  
Sbjct: 344 RCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEA 403

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTP-DEKTLTALIKIYGKARWAKDALELWER 387
           VY  L++     G+   A+ L  EM+   + P   K  +++I    K     +  ++ + 
Sbjct: 404 VYRCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLFKEGRVAEGKDIMDL 463

Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
           M +     + + +N+L+     +G +EEA  L + M  S   +P+ Y Y  +++ Y   G
Sbjct: 464 MVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMA-SIGIEPNCYIYGTLVDGYCKNG 522

Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCG 507
            +D+A+ +F +M   GV    +    ++  L +ARR     ++F   I+ G     +  G
Sbjct: 523 RIDDALTVFRDMLHKGVKPTSVLYNIILHGLFQARRTTAAKKMFHEMIESGTTVSIQTYG 582

Query: 508 CLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVD 567
            +L    LC  +        C  +AN  L     +    +  F+ I   F  VI      
Sbjct: 583 VVLG--GLCRNN--------CTDEANMLLEKLFAM----NVKFDIIT--FNIVISAMLKV 626

Query: 568 ARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTL 610
            RR                + A EL    + YGL P +H   L
Sbjct: 627 GRR----------------QEAKELFAAISTYGLVPTVHTYNL 653



 Score = 89.4 bits (220), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 65/270 (24%), Positives = 130/270 (48%), Gaps = 5/270 (1%)

Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITY-STIITCA 232
           FN +    + P E ++  +       G   +  ++L +EM++ +I    + Y S+II   
Sbjct: 390 FNHMVDIGVPPSEAVYRCLIQGCCNHGELVK-AKELISEMMNKDIPPPGVKYFSSIINNL 448

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +     E  +  + M +TG  P+ VT++++++ Y   G +EE  +L +   + G +P+ 
Sbjct: 449 FKEGRVAEGKDIMDLMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNC 508

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
             +  L   + ++G  D    V ++M   GV+P  V+YN +L  + +A +   A+ +F E
Sbjct: 509 YIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYNIILHGLFQARRTTAAKKMFHE 568

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M+ESG T   +T   ++    +     +A  L E++       D I +N +++    +G 
Sbjct: 569 MIESGTTVSIQTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMLKVGR 628

Query: 413 VEEAERLFEDMKLSDY-CKPDNYSYTAMLN 441
            +EA+ LF    +S Y   P  ++Y  M++
Sbjct: 629 RQEAKELFA--AISTYGLVPTVHTYNLMIS 656



 Score = 47.8 bits (112), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 34/198 (17%), Positives = 88/198 (44%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
           ++ YN+ +  L   R+    +++ +EM+ +   +   TY  ++    R N  DEA    E
Sbjct: 543 SVLYNIILHGLFQARRTTAAKKMFHEMIESGTTVSIQTYGVVLGGLCRNNCTDEANMLLE 602

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
           +++   +  D +T++ ++    K G+ +E   L+      G  P    ++++     +  
Sbjct: 603 KLFAMNVKFDIITFNIVISAMLKVGRRQEAKELFAAISTYGLVPTVHTYNLMISNLIKEE 662

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
            Y+    +   ++  G  P+  + N ++  + K  +   A +    + E+ LT +  T++
Sbjct: 663 SYEEADNLFISVEKSGRAPDSRLLNHIVRMLLKKAEVAKASNYLSIIDENNLTLEASTIS 722

Query: 367 ALIKIYGKARWAKDALEL 384
            L  ++ +    ++ ++L
Sbjct: 723 LLASLFSREGKCREHIKL 740


>gi|297789717|ref|XP_002862796.1| hypothetical protein ARALYDRAFT_359368 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297308523|gb|EFH39054.1| hypothetical protein ARALYDRAFT_359368 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 378

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/347 (24%), Positives = 152/347 (43%), Gaps = 38/347 (10%)

Query: 144 AITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQF 203
           A++ +  +P  E  + +L  LK   ++  +F W + +   P     YN  +  +   R F
Sbjct: 69  ALSALFFKPQPEFVIGVLRRLKDVNRAIEYFRWYERRTELPHCPESYNSLLLVMARCRNF 128

Query: 204 QLIEQLANEM-VSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSA 262
             ++Q+  EM V+      N     +++C K  N   E  +  + M K    P    Y+ 
Sbjct: 129 DALDQILGEMSVAGFGPSVNTCIEMVLSCVK-ANKLREGFDVVQNMRKFKFRPAFSAYTT 187

Query: 263 ILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG 322
           ++  ++     + +L+L+++    G++P    F+ L + F + G  D    +L EMKS  
Sbjct: 188 LIGAFSAVNHSDMMLALFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSS 247

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382
           +  ++V+YN  +++ GK GK  +A   F E+  +GL PDE T T++I +  KA    +A+
Sbjct: 248 LDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAV 307

Query: 383 ELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNI 442
           E++E + +N+       YNT                                    M+  
Sbjct: 308 EMFEHLEKNRRVPCTYAYNT------------------------------------MIMG 331

Query: 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
           YGS G  D A  L E     G   +V+   C++ CL K  ++D+ +R
Sbjct: 332 YGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALR 378



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 63/273 (23%), Positives = 105/273 (38%), Gaps = 53/273 (19%)

Query: 228 IITCAKRCNLFDEAIE---WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
           +I   +R    + AIE   W+ER  +    P+  +Y+++L V A+    + +  +     
Sbjct: 82  VIGVLRRLKDVNRAIEYFRWYERRTELPHCPE--SYNSLLLVMARCRNFDALDQILGEMS 139

Query: 285 ASGWKP------DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMG 338
            +G+ P      + +   V      E  D      V+Q M+    +P    Y TL+ A  
Sbjct: 140 VAGFGPSVNTCIEMVLSCVKANKLREGFD------VVQNMRKFKFRPAFSAYTTLIGAFS 193

Query: 339 KAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFI 398
                 +  +LF +M E G  P     T LI+ + K      AL L + M+ +    D +
Sbjct: 194 AVNHSDMMLALFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIV 253

Query: 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458
           LYN    +C D                                 +G  G VD A + F E
Sbjct: 254 LYN----VCIDS--------------------------------FGKVGKVDMAWKFFHE 277

Query: 459 MSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           +   G+  + +  T +I  L KA R+D+ V +F
Sbjct: 278 IEANGLKPDEVTYTSMIGVLCKANRLDEAVEMF 310



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 78/174 (44%), Gaps = 1/174 (0%)

Query: 330 YNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMR 389
           YN+LL  M +         +  EM  +G  P   T   ++    KA   ++  ++ + MR
Sbjct: 115 YNSLLLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLSCVKANKLREGFDVVQNMR 174

Query: 390 ENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNV 449
           + K+   F  Y TL+   + +   +    LF+ M+   Y +P  + +T ++  +   G V
Sbjct: 175 KFKFRPAFSAYTTLIGAFSAVNHSDMMLALFQQMQELGY-EPTVHLFTTLIRGFAKEGRV 233

Query: 450 DNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
           D+A+ L +EM    +  +++     I   GK  ++D   + F      G+KPD+
Sbjct: 234 DSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDE 287


>gi|242054609|ref|XP_002456450.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
 gi|241928425|gb|EES01570.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
          Length = 669

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 97/436 (22%), Positives = 196/436 (44%), Gaps = 19/436 (4%)

Query: 115 YSYNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTRENALLILNSL---KFWQKSY 171
           Y+Y P +R L    R  +     ++   R       QP      ++L ++     ++++ 
Sbjct: 144 YTYTPLIRVLCDRGRVADALSLLDDMLRRGC-----QPNVVTYTVLLEAMCRNSGFEQAM 198

Query: 172 FFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIIT- 230
              + ++++   P   + YNV +  +    +     +L N + S   + D ++Y+T++  
Sbjct: 199 AVLDEMRAKGCTP-NIVTYNVIINGMCREGRVDDARELLNRLPSYGFQPDTVSYTTLLKG 257

Query: 231 -CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWK 289
            CA +   +D+  E F  M +   MP+EVT+  ++  + + G VE  + + E+    G  
Sbjct: 258 LCASK--RWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHGCA 315

Query: 290 PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSL 349
            +    +++     + G  D    +L +M S G  P+ + Y T+L+ + +A +   A+ L
Sbjct: 316 TNTTLCNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAKEL 375

Query: 350 FDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCAD 409
            +EMV +   P+E T    I I  +    + A+ L E+M E+   +  + YN L+N    
Sbjct: 376 LNEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNALVNGFCV 435

Query: 410 IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVM 469
            G ++ A  LF  M     CKP+  +YT +L    +   +D A EL  EM       NV+
Sbjct: 436 QGHIDSALELFRSMP----CKPNTITYTTLLTGLCNAERLDGAAELVAEMLRGDCPPNVV 491

Query: 470 GCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCL 529
               L+    +   +++ + +    ++ G  P+      LL  ++   +SED  +++  L
Sbjct: 492 TFNVLVSFFCQKGFLEEAIELVEQMMEHGCTPNLITYNTLLDGITKDCSSEDALELLHGL 551

Query: 530 --QQANPKLVAFLNLI 543
             +  +P ++ F ++I
Sbjct: 552 VSKGVSPDVITFSSII 567



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 128/277 (46%), Gaps = 6/277 (2%)

Query: 184 PMETIFYNVTMKS-LRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
           P++   YN  +    R+G       +L   M    +  D  TY+ +I          +A+
Sbjct: 108 PVDVFAYNTLVAGYCRYG-HLDAARRLIGSM---PVAPDAYTYTPLIRVLCDRGRVADAL 163

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
              + M + G  P+ VTY+ +L+   ++   E+ +++ +   A G  P+ + ++V+    
Sbjct: 164 SLLDDMLRRGCQPNVVTYTVLLEAMCRNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGM 223

Query: 303 GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
              G  D  R +L  + S G QP+ V Y TLL+ +  + +      LF EM+E    P+E
Sbjct: 224 CREGRVDDARELLNRLPSYGFQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNE 283

Query: 363 KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED 422
            T   LI+ + +    + A+++ E+M E+    +  L N ++N     G V++A +L  D
Sbjct: 284 VTFDMLIRFFCRGGMVERAIQVLEQMTEHGCATNTTLCNIVINSICKQGRVDDAFKLLND 343

Query: 423 MKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           M  S  C PD  SYT +L         D+A EL  EM
Sbjct: 344 MG-SYGCNPDTISYTTVLKGLCRAERWDDAKELLNEM 379



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 145/316 (45%), Gaps = 8/316 (2%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           I  N   K  R    F+L+    N+M S     D I+Y+T++    R   +D+A E    
Sbjct: 323 IVINSICKQGRVDDAFKLL----NDMGSYGCNPDTISYTTVLKGLCRAERWDDAKELLNE 378

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M +    P+EVT++  + +  + G +E+ + L E+    G     + ++ L   F   G 
Sbjct: 379 MVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNALVNGFCVQGH 438

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
            D     L+  +S+  +PN + Y TLL  +  A +   A  L  EM+     P+  T   
Sbjct: 439 IDS---ALELFRSMPCKPNTITYTTLLTGLCNAERLDGAAELVAEMLRGDCPPNVVTFNV 495

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           L+  + +  + ++A+EL E+M E+    + I YNTLL+        E+A  L   + +S 
Sbjct: 496 LVSFFCQKGFLEEAIELVEQMMEHGCTPNLITYNTLLDGITKDCSSEDALELLHGL-VSK 554

Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
              PD  ++++++ I      ++ A++LF  + ++G+    +    ++  L K   ID+ 
Sbjct: 555 GVSPDVITFSSIIGILSKEDRIEEAVQLFHVVQDIGMRPKAVVYNKILLGLCKRCEIDNA 614

Query: 488 VRVFGVSIDRGVKPDD 503
           +  F   +  G  P++
Sbjct: 615 IDFFAYMVSNGCMPNE 630



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 82/351 (23%), Positives = 152/351 (43%), Gaps = 33/351 (9%)

Query: 183 FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
           F  +T+ Y   +K L   +++  +E+L  EM+      + +T+  +I    R  + + AI
Sbjct: 244 FQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAI 303

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
           +  E+M + G   +    + +++   K G+V++   L     + G  PD I+++ + K  
Sbjct: 304 QVLEQMTEHGCATNTTLCNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGL 363

Query: 303 GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT--- 359
             +  +D  + +L EM      PN V +NT +  + + G    A  L ++M E G T   
Sbjct: 364 CRAERWDDAKELLNEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTVGV 423

Query: 360 -----------------------------PDEKTLTALIKIYGKARWAKDALELWERMRE 390
                                        P+  T T L+     A     A EL   M  
Sbjct: 424 VTYNALVNGFCVQGHIDSALELFRSMPCKPNTITYTTLLTGLCNAERLDGAAELVAEMLR 483

Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
              P + + +N L++     G +EEA  L E M +   C P+  +Y  +L+      + +
Sbjct: 484 GDCPPNVVTFNVLVSFFCQKGFLEEAIELVEQM-MEHGCTPNLITYNTLLDGITKDCSSE 542

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
           +A+EL   +   GV+ +V+  + +I  L K  RI++ V++F V  D G++P
Sbjct: 543 DALELLHGLVSKGVSPDVITFSSIIGILSKEDRIEEAVQLFHVVQDIGMRP 593



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 92/198 (46%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
           TI Y   +  L    +     +L  EM+  +   + +T++ +++   +    +EAIE  E
Sbjct: 455 TITYTTLLTGLCNAERLDGAAELVAEMLRGDCPPNVVTFNVLVSFFCQKGFLEEAIELVE 514

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
           +M + G  P+ +TY+ +LD   K    E+ L L    V+ G  PD I FS +  +  +  
Sbjct: 515 QMMEHGCTPNLITYNTLLDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKED 574

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
             +    +   ++ +G++P  VVYN +L  + K  +   A   F  MV +G  P+E T  
Sbjct: 575 RIEEAVQLFHVVQDIGMRPKAVVYNKILLGLCKRCEIDNAIDFFAYMVSNGCMPNESTYI 634

Query: 367 ALIKIYGKARWAKDALEL 384
            LI+        K+A +L
Sbjct: 635 ILIEGLAHEGLLKEAQDL 652



 Score = 72.4 bits (176), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 100/227 (44%), Gaps = 7/227 (3%)

Query: 279 LYER-GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
           L ER G   G  PD    + L +     G       VL+  +  G   ++  YNTL+   
Sbjct: 62  LVERSGSCDGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGY 121

Query: 338 GKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDF 397
            + G    AR L   M    + PD  T T LI++        DAL L + M       + 
Sbjct: 122 CRYGHLDAARRLIGSM---PVAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNV 178

Query: 398 ILYNTLLN-MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELF 456
           + Y  LL  MC + G  E+A  + ++M+ +  C P+  +Y  ++N     G VD+A EL 
Sbjct: 179 VTYTVLLEAMCRNSGF-EQAMAVLDEMR-AKGCTPNIVTYNVIINGMCREGRVDDARELL 236

Query: 457 EEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
             +   G   + +  T L++ L  ++R DD+  +F   +++   P++
Sbjct: 237 NRLPSYGFQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNE 283



 Score = 45.8 bits (107), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 56/116 (48%)

Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
           +L + +VS  +  D IT+S+II    + +  +EA++ F  +   G+ P  V Y+ IL   
Sbjct: 546 ELLHGLVSKGVSPDVITFSSIIGILSKEDRIEEAVQLFHVVQDIGMRPKAVVYNKILLGL 605

Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGV 323
            K  +++  +  +   V++G  P+   + +L +     G     + +L  + S GV
Sbjct: 606 CKRCEIDNAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEAQDLLSVLCSRGV 661


>gi|410110109|gb|AFV61134.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           diamantinensis]
          Length = 363

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/366 (22%), Positives = 170/366 (46%), Gaps = 6/366 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           + K+   F+ +K     P + + YN  +      + F+    L +EM +  +  +  +YS
Sbjct: 2   YSKAISIFSRLKRSGFTP-DLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYS 60

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T++T       F EA+  F  M +   + D  T + ++DVY + G  +E   L+      
Sbjct: 61  TLLTMYVENKKFLEALXVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 120

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G +P+ ++++ L +++G++  +    ++ + M+   ++ N+V YN+++   GK  +   A
Sbjct: 121 GIEPNVVSYNTLLRVYGDAELFGESIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKA 180

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
            +L  EM   G+ P+  T + +I I+GK      A  L++++R     +D IL+ T++  
Sbjct: 181 NNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSTGVEIDQILFQTMIVA 240

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               GL+  A+RL  ++K     +PDN      ++I    G ++ A  +F +  + G   
Sbjct: 241 YERAGLIAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVK 295

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
           ++     +I  L K ++  ++V VF      G  PD  +   +L+     +  +    V 
Sbjct: 296 DITVFERMIHLLSKYKKYANVVEVFDKMRGLGYFPDSNVIAVVLNAYGKLQEFDKANDVY 355

Query: 527 TCLQQA 532
             +Q+ 
Sbjct: 356 MEMQEV 361



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 99/206 (48%), Gaps = 1/206 (0%)

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
           DY     +   +K  G  P+LV YN ++   GKA     ARSL  EM  +G+ P+  + +
Sbjct: 1   DYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYS 60

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
            L+ +Y + +   +AL ++  MRE K  +D    N ++++   +G+ +EA++LF  M+  
Sbjct: 61  TLLTMYVENKKFLEALXVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 120

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
              +P+  SY  +L +YG       +I LF  M    +  NV+    ++   GK    + 
Sbjct: 121 G-IEPNVVSYNTLLRVYGDAELFGESIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEK 179

Query: 487 LVRVFGVSIDRGVKPDDRLCGCLLSV 512
              +      RG++P+      ++S+
Sbjct: 180 ANNLIQEMQSRGIEPNSITYSTIISI 205



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 52/242 (21%), Positives = 100/242 (41%), Gaps = 36/242 (14%)

Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGR--QFQLI 206
           P+  +    L +    + + +S   F  ++ +N+     + YN  M  + +G+  + +  
Sbjct: 124 PNVVSYNTLLRVYGDAELFGESIHLFRLMQRKNI-EQNVVTYNSMM--MIYGKTLEHEKA 180

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
             L  EM S  IE ++ITYSTII+   +    D A   F+++  TG+  D++ +  ++  
Sbjct: 181 NNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSTGVEIDQILFQTMIVA 240

Query: 267 Y-------------------------------AKSGKVEEVLSLYERGVASGWKPDPIAF 295
           Y                               A +G++EE   ++ + + +G   D   F
Sbjct: 241 YERAGLIAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVF 300

Query: 296 SVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVE 355
             +  +  +   Y  +  V  +M+ LG  P+  V   +L A GK  +   A  ++ EM E
Sbjct: 301 ERMIHLLSKYKKYANVVEVFDKMRGLGYFPDSNVIAVVLNAYGKLQEFDKANDVYMEMQE 360

Query: 356 SG 357
            G
Sbjct: 361 VG 362



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 69/153 (45%), Gaps = 1/153 (0%)

Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
           A+ ++ R++ + +  D + YN ++N+     L  EA  L  +MK +    P+  SY+ +L
Sbjct: 5   AISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAG-VMPNTTSYSTLL 63

Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
            +Y        A+ +F EM E+   +++  C  +I   G+     +  ++F      G++
Sbjct: 64  TMYVENKKFLEALXVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 123

Query: 501 PDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN 533
           P+      LL V    E   +   +   +Q+ N
Sbjct: 124 PNVVSYNTLLRVYGDAELFGESIHLFRLMQRKN 156


>gi|302767472|ref|XP_002967156.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
 gi|300165147|gb|EFJ31755.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
          Length = 651

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 150/319 (47%), Gaps = 3/319 (0%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
           + + Y   + +L    +F   + +  EM++     D +T+ST+I    +    ++A    
Sbjct: 77  DVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDGLCKFGSEEQAFRVL 136

Query: 246 ERMYKTGLMPDEVTYSAILD-VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
           E + + G+   +  +  I+  +  K   VE    +    +A G+ P  + F+++   F +
Sbjct: 137 EDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCK 196

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
           + D D    +L+ M   G  PN+  +  L+  + KA + G A+ L ++MV  G +P+  T
Sbjct: 197 AKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVTGGCSPNVVT 256

Query: 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
            + +I    K     DA EL++ M     P + + +N L++       +EEA +L+  M+
Sbjct: 257 YSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMR 316

Query: 425 LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV-AINVMGCTCLIQCLGKARR 483
            +  C PD  +Y ++++       VD A +LF+ + E GV A N +  + L        R
Sbjct: 317 ETG-CAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGR 375

Query: 484 IDDLVRVFGVSIDRGVKPD 502
           + D  R+F + +D+G  PD
Sbjct: 376 MADACRIFSMLVDKGFSPD 394



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 91/360 (25%), Positives = 150/360 (41%), Gaps = 43/360 (11%)

Query: 181 NLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDE 240
           N+F   TI      K+ R G   QL+E+    MV+     + +TYST+I    +    D+
Sbjct: 218 NVFTF-TILITGLCKANRVGEAQQLLEK----MVTGGCSPNVVTYSTVINGLCKQGQVDD 272

Query: 241 AIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGK 300
           A E F+ M +    P+ VT++ ++D   K+ ++EE   LY R   +G  PD I ++ L  
Sbjct: 273 AYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLID 332

Query: 301 MFGESGDYDGIRYVLQEMKSLGVQP-NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
              +S   D    + Q +   GV   N V Y+TL       G+   A  +F  +V+ G +
Sbjct: 333 GLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFS 392

Query: 360 PDEKTLTALIKIYGKARWA-----------------------------------KDALEL 384
           PD  T T+LI  Y K   A                                   + A++L
Sbjct: 393 PDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQL 452

Query: 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM--KLSDYCKPDNYSYTAMLNI 442
           ++ M       D ++YN ++   A      +A  + E +  K      P + +  A++  
Sbjct: 453 FDSMAARGCTDDALIYNLVVEGMARASKHNKALAVLEQVIDKRDRKFNPSSSAVDALVES 512

Query: 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
               G  D+A +L  +MSE G A  V     L+  L + +R D+  +VF   +  G  P+
Sbjct: 513 LCQVGRTDDAKQLLHKMSERGFAAAVSSYNGLLSGLSRLQRWDEATQVFEAMVSAGPAPE 572



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 82/374 (21%), Positives = 162/374 (43%), Gaps = 43/374 (11%)

Query: 170 SYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTII 229
           +Y  F  ++ +N  P   + +N+ +  L   ++ +   QL + M       D ITY+++I
Sbjct: 273 AYELFQLMERRNC-PPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLI 331

Query: 230 TCAKRCNLFDEAIEWFERMYKTGL-MPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
               +    DEA + F+ + ++G+   + VTYS +   YA  G++ +   ++   V  G+
Sbjct: 332 DGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGRMADACRIFSMLVDKGF 391

Query: 289 KPDPIAF------------------------------------SVLGKMFGESGDYDGIR 312
            PD   +                                    +VLG +F E    +   
Sbjct: 392 SPDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGLF-EGNHTERAI 450

Query: 313 YVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES---GLTPDEKTLTALI 369
            +   M + G   + ++YN ++E M +A K   A ++ +++++       P    + AL+
Sbjct: 451 QLFDSMAARGCTDDALIYNLVVEGMARASKHNKALAVLEQVIDKRDRKFNPSSSAVDALV 510

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
           +   +     DA +L  +M E  +      YN LL+  + +   +EA ++FE M +S   
Sbjct: 511 ESLCQVGRTDDAKQLLHKMSERGFAAAVSSYNGLLSGLSRLQRWDEATQVFEAM-VSAGP 569

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
            P+  +   +++   S   VD+A EL + MS+LG   ++  C  LI    K+ R D   +
Sbjct: 570 APEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRADLARK 629

Query: 490 VFGVSIDRGVKPDD 503
           +     + G++P+D
Sbjct: 630 LLEEMTEAGLEPND 643



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/318 (23%), Positives = 135/318 (42%), Gaps = 38/318 (11%)

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           +  TY  +I         D AI+  E M   G   + V ++ ++     +G+V E L  +
Sbjct: 8   NKFTYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRVVEALEHF 67

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
            R +A    PD + ++ L     ++G +D  + +L+EM + G  P+ V ++TL++ + K 
Sbjct: 68  -RAMAKDCAPDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDGLCKF 126

Query: 341 GKPGLARSLFDEMVESGL------------------------------------TPDEKT 364
           G    A  + +++++ G+                                    TP    
Sbjct: 127 GSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLM 186

Query: 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
              +I  + KA+    A +L E M E     +   +  L+        V EA++L E M 
Sbjct: 187 FNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKM- 245

Query: 425 LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484
           ++  C P+  +Y+ ++N     G VD+A ELF+ M       NV+    LI  L KA+RI
Sbjct: 246 VTGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRI 305

Query: 485 DDLVRVFGVSIDRGVKPD 502
           ++  +++    + G  PD
Sbjct: 306 EEARQLYHRMRETGCAPD 323



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 141/297 (47%), Gaps = 13/297 (4%)

Query: 186 ETIFYNVTMKSL-RFGRQ---FQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDE- 240
           +T+ ++  +  L +FG +   F+++E +    + N     +  + TII   + CN ++  
Sbjct: 112 DTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNS----DAAFETIIQ--RLCNKYNSV 165

Query: 241 --AIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
             A +    +   G  P  + ++ +++ + K+  ++    L E  +  G  P+   F++L
Sbjct: 166 ELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTIL 225

Query: 299 GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
                ++      + +L++M + G  PN+V Y+T++  + K G+   A  LF  M     
Sbjct: 226 ITGLCKANRVGEAQQLLEKMVTGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNC 285

Query: 359 TPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAER 418
            P+  T   LI    KA+  ++A +L+ RMRE     D I YN+L++       V+EA +
Sbjct: 286 PPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQ 345

Query: 419 LFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLI 475
           LF+ +  S     +  +Y+ + + Y + G + +A  +F  + + G + ++   T LI
Sbjct: 346 LFQTIPESGVSAANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLI 402



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/316 (20%), Positives = 138/316 (43%), Gaps = 2/316 (0%)

Query: 183 FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
           F    + +N+ +      +      +L   M+      +  T++ +IT   + N   EA 
Sbjct: 180 FTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQ 239

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
           +  E+M   G  P+ VTYS +++   K G+V++   L++        P+ +  ++L    
Sbjct: 240 QLLEKMVTGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGL 299

Query: 303 GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT-PD 361
            ++   +  R +   M+  G  P+++ YN+L++ + K+ +   A  LF  + ESG++  +
Sbjct: 300 CKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAAN 359

Query: 362 EKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFE 421
             T + L   Y       DA  ++  + +  +  D   Y +L+          E   L E
Sbjct: 360 AVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELVE 419

Query: 422 DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
           +M    +  P   + +A+L     G + + AI+LF+ M+  G   + +    +++ + +A
Sbjct: 420 EMASKGF-PPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARA 478

Query: 482 RRIDDLVRVFGVSIDR 497
            + +  + V    ID+
Sbjct: 479 SKHNKALAVLEQVIDK 494



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/252 (22%), Positives = 116/252 (46%), Gaps = 7/252 (2%)

Query: 254 MPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRY 313
           MP++ TY  ++  ++ +G ++  + L E   ++G++ + +  + L K   ++G    +  
Sbjct: 6   MPNKFTYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGR---VVE 62

Query: 314 VLQEMKSLG--VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371
            L+  +++     P+++ Y  L+ A+ KAGK   A+ +  EM+  G  PD  T + LI  
Sbjct: 63  ALEHFRAMAKDCAPDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDG 122

Query: 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLN-MCADIGLVEEAERLFEDMKLSDYCK 430
             K    + A  + E + +         + T++  +C     VE A ++   +    +  
Sbjct: 123 LCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGF-T 181

Query: 431 PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRV 490
           P    +  ++N +    ++D+A +L E M E G   NV   T LI  L KA R+ +  ++
Sbjct: 182 PTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQL 241

Query: 491 FGVSIDRGVKPD 502
               +  G  P+
Sbjct: 242 LEKMVTGGCSPN 253



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 64/126 (50%)

Query: 239 DEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
           D+A +   +M + G      +Y+ +L   ++  + +E   ++E  V++G  P+    +V+
Sbjct: 520 DDAKQLLHKMSERGFAAAVSSYNGLLSGLSRLQRWDEATQVFEAMVSAGPAPEISTVNVV 579

Query: 299 GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
                 +   D    ++Q M  LG  P++   NTL+    K+G+  LAR L +EM E+GL
Sbjct: 580 ISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRADLARKLLEEMTEAGL 639

Query: 359 TPDEKT 364
            P++ T
Sbjct: 640 EPNDTT 645



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 60/127 (47%)

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
           +QL ++M          +Y+ +++   R   +DEA + FE M   G  P+  T + ++  
Sbjct: 523 KQLLHKMSERGFAAAVSSYNGLLSGLSRLQRWDEATQVFEAMVSAGPAPEISTVNVVISW 582

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
              + KV++   L +R    G  PD    + L   + +SG  D  R +L+EM   G++PN
Sbjct: 583 LCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRADLARKLLEEMTEAGLEPN 642

Query: 327 LVVYNTL 333
              ++ L
Sbjct: 643 DTTHDLL 649



 Score = 43.1 bits (100), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 8/124 (6%)

Query: 179 SQNLFPMETIFYNVTMKSL----RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKR 234
           S+  F      YN  +  L    R+    Q+ E + +   + EI   N+  S + + AK 
Sbjct: 530 SERGFAAAVSSYNGLLSGLSRLQRWDEATQVFEAMVSAGPAPEISTVNVVISWLCSAAK- 588

Query: 235 CNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIA 294
               D+A E  +RM K G  PD  T + ++  Y KSG+ +    L E    +G +P+   
Sbjct: 589 ---VDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRADLARKLLEEMTEAGLEPNDTT 645

Query: 295 FSVL 298
             +L
Sbjct: 646 HDLL 649



 Score = 40.0 bits (92), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 84/186 (45%), Gaps = 11/186 (5%)

Query: 425 LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484
           ++  C P+ ++Y  ++  + S G++D AI+L EEM   G   N +  T L++ L  A R+
Sbjct: 1   MARICMPNKFTYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRV 60

Query: 485 DDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETS---EDVGKVITCLQQA-NPKLVAFL 540
            + +  F  ++ +   PD      L  V +LC+     E  G +   + +   P  V F 
Sbjct: 61  VEALEHF-RAMAKDCAPDVMTYTAL--VHALCKAGKFDEAQGMLREMIARGCAPDTVTFS 117

Query: 541 NLIEDNSTGFENIKEEFR---NVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGT 597
            LI D    F + ++ FR   +VI+    ++   F   +  +C   N  E A ++L +  
Sbjct: 118 TLI-DGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVI 176

Query: 598 LYGLYP 603
             G  P
Sbjct: 177 AKGFTP 182


>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
 gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
          Length = 1031

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 151/343 (44%), Gaps = 6/343 (1%)

Query: 160 ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIE 219
           +L  LK  Q +  FF W   +  F   T   N  +++L        I  +   M+     
Sbjct: 99  VLQRLKDPQTAIVFFVWAGDRG-FKHSTFTRNCFLQTLLENGSSDRIPAMFERMLDAGYA 157

Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
            D+ TY  +I    + N  D+A    ++    G  P+   Y+ +   + K+G++++ L +
Sbjct: 158 PDSYTYHLVIKSLCQMNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAFCKTGRLKDALEI 217

Query: 280 YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
           + R + S   PD IA++ +        D DG    L+EM    V P++  YN L++ + K
Sbjct: 218 F-RNIPS---PDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNILIDGLCK 273

Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
           A K   A  +  EMV+ G+TPD  T  +++    KA   + A  L   M E         
Sbjct: 274 ASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCT 333

Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           YNTL++       V+ A+ L ++   S +  PD  +Y+ + +     G +D A EL +EM
Sbjct: 334 YNTLISGLCKQQNVDRAKDLVDEFVSSGFV-PDVVTYSILADGLCKRGRIDEAFELVKEM 392

Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           S  G   N++    LI  L KA + +    +    +  G  PD
Sbjct: 393 SGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPD 435



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/366 (24%), Positives = 160/366 (43%), Gaps = 9/366 (2%)

Query: 140 AFLRAITEIPHQPTRENALLILNSL---KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKS 196
           A    + +  + P      L++ SL       K++   +  K +   P  +++  +T   
Sbjct: 146 AMFERMLDAGYAPDSYTYHLVIKSLCQMNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAF 205

Query: 197 LRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPD 256
            + GR      + A E+  N    D I Y+ II    R N  D A+E+ + M +  + PD
Sbjct: 206 CKTGRL-----KDALEIFRNIPSPDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPD 260

Query: 257 EVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQ 316
             TY+ ++D   K+ K ++   +    V  G  PD + F+ +     ++G ++    +L 
Sbjct: 261 VFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLA 320

Query: 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
            M     +P+   YNTL+  + K      A+ L DE V SG  PD  T + L     K  
Sbjct: 321 VMAERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRG 380

Query: 377 WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY 436
              +A EL + M       + + YNTL++        E+A  L E +  S +  PD  +Y
Sbjct: 381 RIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFV-PDVVTY 439

Query: 437 TAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496
           T +++     G +D A+++ E M + G   +V+  T L++ L +  R+D+   +F   + 
Sbjct: 440 TIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVS 499

Query: 497 RGVKPD 502
           +    D
Sbjct: 500 KDCTAD 505



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 147/330 (44%), Gaps = 5/330 (1%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
           F   +  + + P +   YN+ +  L    +     ++ +EMV   +  D +T+++I+   
Sbjct: 248 FLKEMNERKVAP-DVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGL 306

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +   F+ A      M +    P   TY+ ++    K   V+    L +  V+SG+ PD 
Sbjct: 307 CKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDV 366

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
           + +S+L     + G  D    +++EM   G  PNLV YNTL++ + KA K   A  L + 
Sbjct: 367 VTYSILADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLES 426

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           +V SG  PD  T T ++    K      AL++ E M +       I Y  L+      G 
Sbjct: 427 LVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGR 486

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
           V+EA  +F++M +S  C  D  +Y +++N Y        A ++ + +      I+V    
Sbjct: 487 VDEAHHIFKEM-VSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTPY-IDVY--N 542

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
            L+    K  R+D++  VF     RG  P+
Sbjct: 543 ALMDGYCKEGRLDEIPNVFEDMACRGCVPN 572



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 88/382 (23%), Positives = 160/382 (41%), Gaps = 38/382 (9%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           +++++     +  +N  P     YN  +  L   +     + L +E VS+    D +TYS
Sbjct: 312 FERAHSLLAVMAERNCRP-SCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYS 370

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
            +     +    DEA E  + M   G  P+ VTY+ ++D   K+ K E+   L E  V+S
Sbjct: 371 ILADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSS 430

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
           G+ PD + ++++     + G  D    +++ M   G  P+++ Y  L+E + + G+   A
Sbjct: 431 GFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEA 490

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
             +F EMV    T D     +L+  Y K+   K+A ++ + +R   +     +YN L++ 
Sbjct: 491 HHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTPY---IDVYNALMDG 547

Query: 407 CADIGLVEEAERLFEDMKL----------------------------------SDYCKPD 432
               G ++E   +FEDM                                    S  C PD
Sbjct: 548 YCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPD 607

Query: 433 NYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFG 492
             SY  +++          A ++ ++M + G+  + +    L+    K  R DD V +  
Sbjct: 608 VVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILK 667

Query: 493 VSIDRGVKPDDRLCGCLLSVVS 514
             I  GV PD+     L+S +S
Sbjct: 668 NMIKAGVDPDNVTYNTLISGLS 689



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 128/280 (45%), Gaps = 6/280 (2%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
           TY+ ++    +    DEA  + E M+  G +PD V+Y+ I+D   K+ K +E   + ++ 
Sbjct: 575 TYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQM 634

Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
           + +G  PD + ++ L   F +   +D    +L+ M   GV P+ V YNTL+  + +  + 
Sbjct: 635 IQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRL 694

Query: 344 GLARSLFDEMVESGLTPDE-KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
           G A  L  EM+ +G       T   +I    K    K AL L + M  +    + + YN 
Sbjct: 695 GDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNI 754

Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
            ++     G ++EA  L  +M        D  SYT ++        +D A +L  EM  +
Sbjct: 755 FIDRLCKEGRLDEASSLLSEMDT----LRDEVSYTTVIIGLCKAEQLDRASKLAREMVAV 810

Query: 463 -GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
            G+ I       LI    K +R+D+ + + G+ + RG  P
Sbjct: 811 KGLCITSHTFNLLIDAFTKTKRLDEALTLLGLMVQRGCSP 850



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 142/300 (47%), Gaps = 5/300 (1%)

Query: 188 IFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
           I Y   M+ L R GR  +    +  EMVS +   D + Y +++    + +   EA +  +
Sbjct: 472 ITYTALMEGLCRTGRVDE-AHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVD 530

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
            +  T   P    Y+A++D Y K G+++E+ +++E     G  P+   ++++     + G
Sbjct: 531 GIRGT---PYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHG 587

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
             D     L+ M S G  P++V YN +++ + KA KP  AR + D+M+++G+ PD  T  
Sbjct: 588 KVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYN 647

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
            L+  + K     DA+ + + M +     D + YNTL++  +    + +A  L  +M  +
Sbjct: 648 TLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRN 707

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
                   +Y  +++     G +  A+ L + M+  GV  N +     I  L K  R+D+
Sbjct: 708 GCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDE 767



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 79/347 (22%), Positives = 146/347 (42%), Gaps = 44/347 (12%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           + YN  +  L    + +   +L   +VS+    D +TY+ I+    +    D+A++  E 
Sbjct: 402 VTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEG 461

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES-- 305
           M K G  P  +TY+A+++   ++G+V+E   +++  V+     D +A+  L   + +S  
Sbjct: 462 MLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSR 521

Query: 306 ------------------------------GDYDGIRYVLQEMKSLGVQPNLVVYNTLLE 335
                                         G  D I  V ++M   G  PN+  YN +++
Sbjct: 522 TKEAQKVVDGIRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMD 581

Query: 336 AMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPM 395
            + K GK   A    + M  +G  PD  +   +I    KA   K+A ++ ++M +   P 
Sbjct: 582 GLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPP 641

Query: 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIEL 455
           D + YNTL+         ++A  + ++M +     PDN +Y  +++       + +A EL
Sbjct: 642 DAVTYNTLMAQFCKEERFDDAVGILKNM-IKAGVDPDNVTYNTLISGLSQTNRLGDAYEL 700

Query: 456 FEEMSELGVAINVMGCT---------CLIQCLGKARRIDDLVRVFGV 493
             EM   G  ++   CT         C   CL +A  + D +   GV
Sbjct: 701 MHEMLRNGCVVS--ACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGV 745



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 125/290 (43%), Gaps = 6/290 (2%)

Query: 180 QNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFD 239
           Q   P + + YN  M       +F     +   M+   ++ DN+TY+T+I+   + N   
Sbjct: 636 QAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLG 695

Query: 240 EAIEWFERMYKTGLMPDE-VTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
           +A E    M + G +     TY+ I+D   K G +++ L L +     G + + + +++ 
Sbjct: 696 DAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIF 755

Query: 299 GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVE-SG 357
                + G  D    +L EM +L    + V Y T++  + KA +   A  L  EMV   G
Sbjct: 756 IDRLCKEGRLDEASSLLSEMDTL---RDEVSYTTVIIGLCKAEQLDRASKLAREMVAVKG 812

Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417
           L     T   LI  + K +   +AL L   M +       I YN ++     +  V++A 
Sbjct: 813 LCITSHTFNLLIDAFTKTKRLDEALTLLGLMVQRGCSPSVITYNMVITCLCKLDKVDKAW 872

Query: 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
            LF++M +       + SYT ++      G    A+++ EEM+     I+
Sbjct: 873 ELFDEMAVRGIV-ASSVSYTVLIYGLCGQGRGKEALQVLEEMASSDCEID 921



 Score = 79.7 bits (195), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 139/317 (43%), Gaps = 8/317 (2%)

Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
           +++ F   + S    P + + YN+ +  L    + +   Q+ ++M+   I  D +TY+T+
Sbjct: 591 EAFPFLESMHSAGCVP-DVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTL 649

Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
           +    +   FD+A+   + M K G+ PD VTY+ ++   +++ ++ +   L    + +G 
Sbjct: 650 MAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGC 709

Query: 289 KPDPI-AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
                  ++ +     + G       ++  M   GV+ N V YN  ++ + K G+   A 
Sbjct: 710 VVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEAS 769

Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENK-WPMDFILYNTLLNM 406
           SL  EM       DE + T +I    KA     A +L   M   K   +    +N L++ 
Sbjct: 770 SLLSEM---DTLRDEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDA 826

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
                 ++EA  L   M +   C P   +Y  ++        VD A ELF+EM+  G+  
Sbjct: 827 FTKTKRLDEALTLLGLM-VQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVA 885

Query: 467 NVMGCTCLIQCL-GKAR 482
           + +  T LI  L G+ R
Sbjct: 886 SSVSYTVLIYGLCGQGR 902



 Score = 39.7 bits (91), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 38/71 (53%)

Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
           ITY+ +ITC  + +  D+A E F+ M   G++   V+Y+ ++      G+ +E L + E 
Sbjct: 853 ITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEE 912

Query: 283 GVASGWKPDPI 293
             +S  + D +
Sbjct: 913 MASSDCEIDDL 923


>gi|224075357|ref|XP_002304600.1| predicted protein [Populus trichocarpa]
 gi|222842032|gb|EEE79579.1| predicted protein [Populus trichocarpa]
          Length = 641

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 89/365 (24%), Positives = 162/365 (44%), Gaps = 35/365 (9%)

Query: 191 NVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYK 250
           NV ++   F R  +    +      N I  + +T++ +I    +  L D+A++ F  M  
Sbjct: 139 NVIIQEGLFYRALEFYNHVIGAKGVN-ISPNVLTFNLVIKTMCKVGLVDDAVQMFRDMPV 197

Query: 251 TGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDG 310
           +   PD  TY  ++D   K+ +++E +SL +     G  P P+ F+VL     + GD   
Sbjct: 198 SKCQPDVYTYCTLMDGLCKADRIDEAVSLLDEMQIDGCFPSPVTFNVLINGLCKKGDLAR 257

Query: 311 IRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK 370
           +  ++  M   G  PN V YNTL+  +   GK   A SL D MV S   P+  T   +I 
Sbjct: 258 VAKLVDNMFLKGCAPNEVTYNTLIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIIN 317

Query: 371 IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL----- 425
              K   A D   +   M E  + ++  +Y+ L++     G  +EA +LF++M +     
Sbjct: 318 GLVKQGRALDGARVLALMEERGYHVNEYVYSALISGLFKEGKSQEAMQLFKEMTVKECEL 377

Query: 426 -----------------------------SDYCKPDNYSYTAMLNIYGSGGNVDNAIELF 456
                                        ++ CKP+ Y+Y++++  +   GN   AIE++
Sbjct: 378 NTIVYSAVIDGLCRDGKPDEALEVLSEMTNNRCKPNAYTYSSLMKGFFEAGNGHKAIEMW 437

Query: 457 EEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLC 516
           ++M++     N +  + LI  L K  ++ + + V+   + +G KPD    G +++ +S  
Sbjct: 438 KDMAKHNFTQNEVCYSVLIHGLCKDGKVKEAMMVWAQMLGKGCKPDVVAYGSMINGLSNA 497

Query: 517 ETSED 521
              ED
Sbjct: 498 GLVED 502



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 86/330 (26%), Positives = 156/330 (47%), Gaps = 12/330 (3%)

Query: 183 FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
           FP    F NV +  L        + +L + M       + +TY+T+I         ++AI
Sbjct: 236 FPSPVTF-NVLINGLCKKGDLARVAKLVDNMFLKGCAPNEVTYNTLIHGLCLKGKLEKAI 294

Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKV---EEVLSLYERGVASGWKPDPIAFSVLG 299
              +RM  +  +P+ VTY  I++   K G+      VL+L E     G+  +   +S L 
Sbjct: 295 SLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGARVLALMEE---RGYHVNEYVYSALI 351

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
               + G       + +EM     + N +VY+ +++ + + GKP  A  +  EM  +   
Sbjct: 352 SGLFKEGKSQEAMQLFKEMTVKECELNTIVYSAVIDGLCRDGKPDEALEVLSEMTNNRCK 411

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN-MCADIGLVEEAER 418
           P+  T ++L+K + +A     A+E+W+ M ++ +  + + Y+ L++ +C D G V+EA  
Sbjct: 412 PNAYTYSSLMKGFFEAGNGHKAIEMWKDMAKHNFTQNEVCYSVLIHGLCKD-GKVKEAMM 470

Query: 419 LFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM--SELGVAINVMGCTCLIQ 476
           ++  M L   CKPD  +Y +M+N   + G V++A++L+ EM   E     +V+    L+ 
Sbjct: 471 VWAQM-LGKGCKPDVVAYGSMINGLSNAGLVEDALQLYNEMLCQEPDSQPDVVTYNILLN 529

Query: 477 CLGKARRIDDLVRVFGVSIDRGVKPDDRLC 506
            L K   I   + +    +DRG  PD   C
Sbjct: 530 ALCKQSSISRAIDLLNSMLDRGCDPDLVTC 559



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 133/292 (45%), Gaps = 1/292 (0%)

Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
           + YN  +  L    + +    L + MVS++   + +TY TII    +     +       
Sbjct: 275 VTYNTLIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGARVLAL 334

Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
           M + G   +E  YSA++    K GK +E + L++       + + I +S +       G 
Sbjct: 335 MEERGYHVNEYVYSALISGLFKEGKSQEAMQLFKEMTVKECELNTIVYSAVIDGLCRDGK 394

Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
            D    VL EM +   +PN   Y++L++   +AG    A  ++ +M +   T +E   + 
Sbjct: 395 PDEALEVLSEMTNNRCKPNAYTYSSLMKGFFEAGNGHKAIEMWKDMAKHNFTQNEVCYSV 454

Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
           LI    K    K+A+ +W +M       D + Y +++N  ++ GLVE+A +L+ +M   +
Sbjct: 455 LIHGLCKDGKVKEAMMVWAQMLGKGCKPDVVAYGSMINGLSNAGLVEDALQLYNEMLCQE 514

Query: 428 -YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL 478
              +PD  +Y  +LN      ++  AI+L   M + G   +++ C   ++ L
Sbjct: 515 PDSQPDVVTYNILLNALCKQSSISRAIDLLNSMLDRGCDPDLVTCIIFLRTL 566



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/282 (21%), Positives = 125/282 (44%), Gaps = 4/282 (1%)

Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYK---TGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
           ++++++    +  LF  A+E++  +       + P+ +T++ ++    K G V++ + ++
Sbjct: 133 SFNSVLNVIIQEGLFYRALEFYNHVIGAKGVNISPNVLTFNLVIKTMCKVGLVDDAVQMF 192

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
                S  +PD   +  L     ++   D    +L EM+  G  P+ V +N L+  + K 
Sbjct: 193 RDMPVSKCQPDVYTYCTLMDGLCKADRIDEAVSLLDEMQIDGCFPSPVTFNVLINGLCKK 252

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G       L D M   G  P+E T   LI         + A+ L +RM  +K   + + Y
Sbjct: 253 GDLARVAKLVDNMFLKGCAPNEVTYNTLIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTY 312

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
            T++N     G   +  R+   M+   Y   + Y Y+A+++     G    A++LF+EM+
Sbjct: 313 GTIINGLVKQGRALDGARVLALMEERGY-HVNEYVYSALISGLFKEGKSQEAMQLFKEMT 371

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
                +N +  + +I  L +  + D+ + V     +   KP+
Sbjct: 372 VKECELNTIVYSAVIDGLCRDGKPDEALEVLSEMTNNRCKPN 413



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 103/233 (44%), Gaps = 12/233 (5%)

Query: 279 LYERGVASG-WKPDPIAFSVLGKMFGESGDYDGIRYVLQEM---KSLGVQPNLVVYNTLL 334
           +++ G   G +K     F  L   +   GD+  +  VL  M   K + V+   VV   + 
Sbjct: 46  IFKSGPKMGSYKLGDSTFYSLIDNYANLGDFKSLEKVLDRMRCEKRVVVEKCFVV---IF 102

Query: 335 EAMGKAGKPGLARSLFDEMV-ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKW 393
           +A GKA  P  A  LFD M  E       K+  +++ +  +      ALE +  +   K 
Sbjct: 103 KAYGKAHLPEKAVGLFDRMAYEFECKRTVKSFNSVLNVIIQEGLFYRALEFYNHVIGAKG 162

Query: 394 ---PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
                + + +N ++     +GLV++A ++F DM +S  C+PD Y+Y  +++       +D
Sbjct: 163 VNISPNVLTFNLVIKTMCKVGLVDDAVQMFRDMPVSK-CQPDVYTYCTLMDGLCKADRID 221

Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
            A+ L +EM   G   + +    LI  L K   +  + ++      +G  P++
Sbjct: 222 EAVSLLDEMQIDGCFPSPVTFNVLINGLCKKGDLARVAKLVDNMFLKGCAPNE 274


>gi|224136033|ref|XP_002327364.1| predicted protein [Populus trichocarpa]
 gi|222835734|gb|EEE74169.1| predicted protein [Populus trichocarpa]
          Length = 662

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/336 (26%), Positives = 162/336 (48%), Gaps = 11/336 (3%)

Query: 170 SYFFFNWIKSQNLFPME---TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
           +Y  F  +K ++  P E   TI   +T K  +     +L E++ N+  S  +    I Y+
Sbjct: 265 AYKVFEDMKRKHCEPDEYTYTIMIRMTGKIGKPDESLELFEEMLNKGYSPNV----IAYN 320

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           T+I       + D+AI  F +M +    P E TYS IL + A   K+ ++  + E  V+ 
Sbjct: 321 TMIQALANARMVDKAILLFLKMVEKECRPSEFTYSVILHLLATERKLHKLDEVVE--VSK 378

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
            +    I ++ L +   + G       +   M +   + +     ++LE +  AGK   A
Sbjct: 379 KYMSRSI-YAYLVRTLKKLGHASEAHRLFCNMWNCHERGDRDACVSMLECLCSAGKTTEA 437

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
             L  ++ E G++ D      +    GK +      +L+E+M+++    D   YN L++ 
Sbjct: 438 IDLLGKIHEKGVSVDTVMYNTVFSALGKLKQISPLHDLYEKMKQDGPLPDTFTYNILISS 497

Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
               G V+EA ++FE+++ SDY KPD  SY +++N  G  G++D A   F+EM E G+  
Sbjct: 498 FGRAGKVDEAIKIFEELEDSDY-KPDTCSYNSLINCLGKNGHLDEAHMKFKEMCEKGLNP 556

Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           +V+  + LI+C GK  +++   R+F   +  G  P+
Sbjct: 557 DVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCYPN 592



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 71/318 (22%), Positives = 141/318 (44%), Gaps = 4/318 (1%)

Query: 185 METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEW 244
           ++   +N+ + +L    +     ++  +M     E D  TY+ +I    +    DE++E 
Sbjct: 244 LDIFAFNMLLDALVKDSEVDHAYKVFEDMKRKHCEPDEYTYTIMIRMTGKIGKPDESLEL 303

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
           FE M   G  P+ + Y+ ++   A +  V++ + L+ + V    +P    +SV+  +   
Sbjct: 304 FEEMLNKGYSPNVIAYNTMIQALANARMVDKAILLFLKMVEKECRPSEFTYSVILHLLAT 363

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
                 +  V++  K    +    +Y  L+  + K G    A  LF  M       D   
Sbjct: 364 ERKLHKLDEVVEVSKKYMSRS---IYAYLVRTLKKLGHASEAHRLFCNMWNCHERGDRDA 420

Query: 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
             ++++    A    +A++L  ++ E    +D ++YNT+ +    +  +     L+E MK
Sbjct: 421 CVSMLECLCSAGKTTEAIDLLGKIHEKGVSVDTVMYNTVFSALGKLKQISPLHDLYEKMK 480

Query: 425 LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484
             D   PD ++Y  +++ +G  G VD AI++FEE+ +     +      LI CLGK   +
Sbjct: 481 -QDGPLPDTFTYNILISSFGRAGKVDEAIKIFEELEDSDYKPDTCSYNSLINCLGKNGHL 539

Query: 485 DDLVRVFGVSIDRGVKPD 502
           D+    F    ++G+ PD
Sbjct: 540 DEAHMKFKEMCEKGLNPD 557



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 100/186 (53%)

Query: 218 IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL 277
           + +D + Y+T+ +   +        + +E+M + G +PD  TY+ ++  + ++GKV+E +
Sbjct: 449 VSVDTVMYNTVFSALGKLKQISPLHDLYEKMKQDGPLPDTFTYNILISSFGRAGKVDEAI 508

Query: 278 SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
            ++E    S +KPD  +++ L    G++G  D      +EM   G+ P++V Y+TL+E  
Sbjct: 509 KIFEELEDSDYKPDTCSYNSLINCLGKNGHLDEAHMKFKEMCEKGLNPDVVTYSTLIECF 568

Query: 338 GKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDF 397
           GK  K  +A  LFDEM+  G  P+  T   L+    ++    +A++L+ ++++     D 
Sbjct: 569 GKTDKVEMACRLFDEMLAEGCYPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLIPDS 628

Query: 398 ILYNTL 403
           I Y+ L
Sbjct: 629 ITYSVL 634



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 130/285 (45%), Gaps = 4/285 (1%)

Query: 218 IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL 277
           + +   TY  ++    R    ++    +  M K G M D   ++ +LD   K  +V+   
Sbjct: 207 LRMTGYTYKCLVQAYLRSRNTEKGFAVYLEMKKKGHMLDIFAFNMLLDALVKDSEVDHAY 266

Query: 278 SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
            ++E       +PD   ++++ +M G+ G  D    + +EM + G  PN++ YNT+++A+
Sbjct: 267 KVFEDMKRKHCEPDEYTYTIMIRMTGKIGKPDESLELFEEMLNKGYSPNVIAYNTMIQAL 326

Query: 338 GKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDF 397
             A     A  LF +MVE    P E T + ++ +    R      +L E +  +K  M  
Sbjct: 327 ANARMVDKAILLFLKMVEKECRPSEFTYSVILHLLATERKLH---KLDEVVEVSKKYMSR 383

Query: 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE 457
            +Y  L+     +G   EA RLF +M  + + + D  +  +ML    S G    AI+L  
Sbjct: 384 SIYAYLVRTLKKLGHASEAHRLFCNM-WNCHERGDRDACVSMLECLCSAGKTTEAIDLLG 442

Query: 458 EMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
           ++ E GV+++ +    +   LGK ++I  L  ++      G  PD
Sbjct: 443 KIHEKGVSVDTVMYNTVFSALGKLKQISPLHDLYEKMKQDGPLPD 487



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 96/200 (48%), Gaps = 1/200 (0%)

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           EAI+   ++++ G+  D V Y+ +     K  ++  +  LYE+    G  PD   +++L 
Sbjct: 436 EAIDLLGKIHEKGVSVDTVMYNTVFSALGKLKQISPLHDLYEKMKQDGPLPDTFTYNILI 495

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
             FG +G  D    + +E++    +P+   YN+L+  +GK G    A   F EM E GL 
Sbjct: 496 SSFGRAGKVDEAIKIFEELEDSDYKPDTCSYNSLINCLGKNGHLDEAHMKFKEMCEKGLN 555

Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
           PD  T + LI+ +GK    + A  L++ M       + + YN LL+     G   EA  L
Sbjct: 556 PDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCYPNIVTYNILLDCLERSGRTAEAVDL 615

Query: 420 FEDMKLSDYCKPDNYSYTAM 439
           +  +K      PD+ +Y+ +
Sbjct: 616 YAKLKQQGLI-PDSITYSVL 634



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 96/187 (51%)

Query: 185 METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEW 244
           ++T+ YN    +L   +Q   +  L  +M  +    D  TY+ +I+   R    DEAI+ 
Sbjct: 451 VDTVMYNTVFSALGKLKQISPLHDLYEKMKQDGPLPDTFTYNILISSFGRAGKVDEAIKI 510

Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
           FE +  +   PD  +Y+++++   K+G ++E    ++     G  PD + +S L + FG+
Sbjct: 511 FEELEDSDYKPDTCSYNSLINCLGKNGHLDEAHMKFKEMCEKGLNPDVVTYSTLIECFGK 570

Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
           +   +    +  EM + G  PN+V YN LL+ + ++G+   A  L+ ++ + GL PD  T
Sbjct: 571 TDKVEMACRLFDEMLAEGCYPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLIPDSIT 630

Query: 365 LTALIKI 371
            + L ++
Sbjct: 631 YSVLARL 637



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 131/279 (46%), Gaps = 12/279 (4%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           Y+V +  L   R+   ++++    VS +    +I Y+ ++   K+     EA   F  M+
Sbjct: 354 YSVILHLLATERKLHKLDEVVE--VSKKYMSRSI-YAYLVRTLKKLGHASEAHRLFCNMW 410

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSL----YERGVASGWKPDPIAFSVLGKMFGES 305
                 D     ++L+    +GK  E + L    +E+GV+         FS LGK+   S
Sbjct: 411 NCHERGDRDACVSMLECLCSAGKTTEAIDLLGKIHEKGVSVDTVMYNTVFSALGKLKQIS 470

Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
             +D    + ++MK  G  P+   YN L+ + G+AGK   A  +F+E+ +S   PD  + 
Sbjct: 471 PLHD----LYEKMKQDGPLPDTFTYNILISSFGRAGKVDEAIKIFEELEDSDYKPDTCSY 526

Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
            +LI   GK     +A   ++ M E     D + Y+TL+        VE A RLF++M L
Sbjct: 527 NSLINCLGKNGHLDEAHMKFKEMCEKGLNPDVVTYSTLIECFGKTDKVEMACRLFDEM-L 585

Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
           ++ C P+  +Y  +L+     G    A++L+ ++ + G+
Sbjct: 586 AEGCYPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGL 624


>gi|125580966|gb|EAZ21897.1| hypothetical protein OsJ_05550 [Oryza sativa Japonica Group]
          Length = 595

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/323 (24%), Positives = 147/323 (45%), Gaps = 1/323 (0%)

Query: 176 WIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRC 235
           WI  ++ F  + I YN+ ++S    RQ    E +   ++  +      TY+ ++      
Sbjct: 164 WILYRSSFRPDIICYNLLIESYGKKRQLNKAESIYMALLEAQCVPTEDTYALLLRAYCNA 223

Query: 236 NLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAF 295
                A      M + G+ P+   Y+A LD   K+   E+ + +Y+R      + +   F
Sbjct: 224 GSLHRAEGVISEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANTETF 283

Query: 296 SVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVE 355
           +++  ++G++        V  EMKS+G +PN+  Y  L+ A  + G    A  +F+EM +
Sbjct: 284 TLMINVYGKAKQPMSSMKVFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQ 343

Query: 356 SGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEE 415
           +G  PD     AL++ Y +A   + A E++  M+      D   YN L++     GL E+
Sbjct: 344 AGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHED 403

Query: 416 AERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLI 475
           AE +FE++K      P   S+  +L  +   GN     E+  ++ + G+  +      ++
Sbjct: 404 AEAVFEELKQRGM-SPTMKSHMLLLAAHARSGNATRCEEVMAQLHKSGLTPDTFALNAML 462

Query: 476 QCLGKARRIDDLVRVFGVSIDRG 498
               +A R+DD+ R+F     RG
Sbjct: 463 NAYARAGRLDDMERLFAAMERRG 485



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 129/269 (47%), Gaps = 3/269 (1%)

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
           K+ +L     EW   +Y++   PD + Y+ +++ Y K  ++ +  S+Y   + +   P  
Sbjct: 153 KKWDLIIPVCEWI--LYRSSFRPDIICYNLLIESYGKKRQLNKAESIYMALLEAQCVPTE 210

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
             +++L + +  +G       V+ EM+  G+ PN  VYN  L+ + KA     A  ++  
Sbjct: 211 DTYALLLRAYCNAGSLHRAEGVISEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQR 270

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
           M       + +T T +I +YGKA+    +++++  M+      +   Y  L+N  A  GL
Sbjct: 271 MKRERCRANTETFTLMINVYGKAKQPMSSMKVFNEMKSIGCKPNICTYTALVNAFAREGL 330

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
            E+AE +FE+M+ + + +PD Y+Y A++  Y   G    A E+F  M  +G   +     
Sbjct: 331 CEKAEEVFEEMQQAGH-EPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYN 389

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
            L+   G+A   +D   VF     RG+ P
Sbjct: 390 ILVDAYGRAGLHEDAEAVFEELKQRGMSP 418



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 89/403 (22%), Positives = 177/403 (43%), Gaps = 7/403 (1%)

Query: 136 NTEEAFLRAITEIPHQPTRENALLILNSL---KFWQKSYFFFNWIKSQNLFPMETIFYNV 192
           N  E+   A+ E    PT +   L+L +        ++    + ++   + P  T+ YN 
Sbjct: 192 NKAESIYMALLEAQCVPTEDTYALLLRAYCNAGSLHRAEGVISEMREHGIPPNATV-YNA 250

Query: 193 TMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTG 252
            +  L   R  +   ++   M       +  T++ +I    +      +++ F  M   G
Sbjct: 251 YLDGLLKARCTEKAVEVYQRMKRERCRANTETFTLMINVYGKAKQPMSSMKVFNEMKSIG 310

Query: 253 LMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIR 312
             P+  TY+A+++ +A+ G  E+   ++E    +G +PD  A++ L + +  +G   G  
Sbjct: 311 CKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGAS 370

Query: 313 YVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIY 372
            +   M+ +G +P+   YN L++A G+AG    A ++F+E+ + G++P  K+   L+  +
Sbjct: 371 EIFSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMKSHMLLLAAH 430

Query: 373 GKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPD 432
            ++  A    E+  ++ ++    D    N +LN  A  G +++ ERLF  M+       D
Sbjct: 431 ARSGNATRCEEVMAQLHKSGLTPDTFALNAMLNAYARAGRLDDMERLFAAMERRG--DAD 488

Query: 433 NYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFG 492
             +Y   +N YG  G V      F  ++  G+A +V+  T  +    + +     V +  
Sbjct: 489 VGTYNVAVNAYGRAGYVGRMEAAFAAVAARGLAADVVTWTARMGAYARRKEYGRCVGMVE 548

Query: 493 VSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPK 535
             +D G  PD      LL+  S     E V  ++  + +  PK
Sbjct: 549 EMVDAGCYPDAGTARVLLAACSDERQVEQVTAIVRSMHK-KPK 590



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 108/246 (43%), Gaps = 1/246 (0%)

Query: 286 SGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGL 345
           S ++PD I +++L + +G+    +    +   +      P    Y  LL A   AG    
Sbjct: 169 SSFRPDIICYNLLIESYGKKRQLNKAESIYMALLEAQCVPTEDTYALLLRAYCNAGSLHR 228

Query: 346 ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405
           A  +  EM E G+ P+     A +    KAR  + A+E+++RM+  +   +   +  ++N
Sbjct: 229 AEGVISEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANTETFTLMIN 288

Query: 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
           +         + ++F +MK S  CKP+  +YTA++N +   G  + A E+FEEM + G  
Sbjct: 289 VYGKAKQPMSSMKVFNEMK-SIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHE 347

Query: 466 INVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKV 525
            +V     L++   +A        +F +    G +PD      L+         ED   V
Sbjct: 348 PDVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAV 407

Query: 526 ITCLQQ 531
              L+Q
Sbjct: 408 FEELKQ 413


>gi|359481971|ref|XP_003632699.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Vitis vinifera]
          Length = 819

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/266 (29%), Positives = 132/266 (49%), Gaps = 3/266 (1%)

Query: 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS 296
           +  E+ E +  M K G++P   + +  L+    + + E+ L L+   V SG +PD   + 
Sbjct: 127 MVSESAELYMLMKKDGVLPSVASLNLFLESLVSTKRYEDTLQLFSEIVESGLRPDQFMYG 186

Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356
              +   + GD      ++  MK  GV P + VYN ++  + K  +   A  LFDEM++ 
Sbjct: 187 KAIQAAVKLGDLKRAIELMTCMKRGGVSPGVFVYNVVIGGLCKEKRMKDAEKLFDEMLDR 246

Query: 357 GLTPDEKTLTALIKIYGKARWAKDALELWERMR-ENKWPMDFILYNTLLNMCADIGLVEE 415
            + P+  T   LI  Y K    ++A  + ERM+ EN  P   I +N+LLN      ++EE
Sbjct: 247 RVAPNRITYNTLIDGYCKVGQLEEAFNIRERMKVENVEP-TIITFNSLLNGLCRAQMMEE 305

Query: 416 AERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLI 475
           A+R+ E+M++  +  PD ++YT + + +   GNVD +I L EE    GV I    C+ L+
Sbjct: 306 AQRVLEEMEVYGFV-PDRFTYTTLFDGHLKCGNVDASITLSEEAVRKGVQILDYTCSILL 364

Query: 476 QCLGKARRIDDLVRVFGVSIDRGVKP 501
             L K   ++    V    ++ G+ P
Sbjct: 365 NALCKEGNMEKAEEVLKKFLENGLAP 390



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 95/393 (24%), Positives = 171/393 (43%), Gaps = 9/393 (2%)

Query: 119 PRVRDLKLFARKLNDCDNTEEAFLRAITEI------PHQPTRENALLILNSLKFWQKSYF 172
           P V  L LF   L      E+  L+  +EI      P Q     A+     L   +++  
Sbjct: 145 PSVASLNLFLESLVSTKRYEDT-LQLFSEIVESGLRPDQFMYGKAIQAAVKLGDLKRAIE 203

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
               +K   + P     YNV +  L   ++ +  E+L +EM+   +  + ITY+T+I   
Sbjct: 204 LMTCMKRGGVSP-GVFVYNVVIGGLCKEKRMKDAEKLFDEMLDRRVAPNRITYNTLIDGY 262

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
            +    +EA    ERM    + P  +T++++L+   ++  +EE   + E     G+ PD 
Sbjct: 263 CKVGQLEEAFNIRERMKVENVEPTIITFNSLLNGLCRAQMMEEAQRVLEEMEVYGFVPDR 322

Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
             ++ L     + G+ D    + +E    GVQ      + LL A+ K G    A  +  +
Sbjct: 323 FTYTTLFDGHLKCGNVDASITLSEEAVRKGVQILDYTCSILLNALCKEGNMEKAEEVLKK 382

Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
            +E+GL P       ++  Y +      A    E+M       + + YN+L+    ++  
Sbjct: 383 FLENGLAPVGVFFNTIVNGYCQVGDINKAYTTIEKMEAVGLRPNHVTYNSLVKKFCEMKN 442

Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
           +EEAE+  + M +     P+  +Y  +++ YG     D   ++ EEM + G+  NV+   
Sbjct: 443 MEEAEKCIKKM-VEKGVLPNVETYNTLIDGYGRSCLFDRCFQILEEMEKKGLKPNVISYG 501

Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRL 505
           CLI CL K   I +   + G  + RGV P+ ++
Sbjct: 502 CLINCLCKDANILEAEVILGDMVHRGVVPNAQI 534



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/258 (25%), Positives = 124/258 (48%), Gaps = 1/258 (0%)

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
           E++  + + N +    + ++TI+    +    ++A    E+M   GL P+ VTY++++  
Sbjct: 377 EEVLKKFLENGLAPVGVFFNTIVNGYCQVGDINKAYTTIEKMEAVGLRPNHVTYNSLVKK 436

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
           + +   +EE     ++ V  G  P+   ++ L   +G S  +D    +L+EM+  G++PN
Sbjct: 437 FCEMKNMEEAEKCIKKMVEKGVLPNVETYNTLIDGYGRSCLFDRCFQILEEMEKKGLKPN 496

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
           ++ Y  L+  + K      A  +  +MV  G+ P+ +    LI     A   KDA   ++
Sbjct: 497 VISYGCLINCLCKDANILEAEVILGDMVHRGVVPNAQIYNMLIDGSCIAGKLKDAFRFFD 556

Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
            M   +     + YN L+N     G V EAE L  ++        D  +Y ++++ Y S 
Sbjct: 557 EMVAREIVPTLVTYNILINGLCKKGKVMEAENLASEITRKGL-SFDVITYNSLISGYSSA 615

Query: 447 GNVDNAIELFEEMSELGV 464
           GNV  A+EL+E M + G+
Sbjct: 616 GNVQKALELYETMKKSGI 633



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 90/401 (22%), Positives = 178/401 (44%), Gaps = 7/401 (1%)

Query: 161 LNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIEL 220
           L S K ++ +   F+ I    L P + ++      +++ G   + IE L   M    +  
Sbjct: 157 LVSTKRYEDTLQLFSEIVESGLRPDQFMYGKAIQAAVKLGDLKRAIE-LMTCMKRGGVSP 215

Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
               Y+ +I    +     +A + F+ M    + P+ +TY+ ++D Y K G++EE  ++ 
Sbjct: 216 GVFVYNVVIGGLCKEKRMKDAEKLFDEMLDRRVAPNRITYNTLIDGYCKVGQLEEAFNIR 275

Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
           ER      +P  I F+ L      +   +  + VL+EM+  G  P+   Y TL +   K 
Sbjct: 276 ERMKVENVEPTIITFNSLLNGLCRAQMMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKC 335

Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
           G    + +L +E V  G+   + T + L+    K    + A E+ ++  EN      + +
Sbjct: 336 GNVDASITLSEEAVRKGVQILDYTCSILLNALCKEGNMEKAEEVLKKFLENGLAPVGVFF 395

Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
           NT++N    +G + +A    E M+     +P++ +Y +++  +    N++ A +  ++M 
Sbjct: 396 NTIVNGYCQVGDINKAYTTIEKMEAVGL-RPNHVTYNSLVKKFCEMKNMEEAEKCIKKMV 454

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSE 520
           E GV  NV     LI   G++   D   ++      +G+KP+    GCL++   LC+ + 
Sbjct: 455 EKGVLPNVETYNTLIDGYGRSCLFDRCFQILEEMEKKGLKPNVISYGCLIN--CLCKDAN 512

Query: 521 DVGKVITCLQQANPKLV---AFLNLIEDNSTGFENIKEEFR 558
            +   +      +  +V      N++ D S     +K+ FR
Sbjct: 513 ILEAEVILGDMVHRGVVPNAQIYNMLIDGSCIAGKLKDAFR 553



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 140/321 (43%), Gaps = 47/321 (14%)

Query: 221 DNITYSTIITCAKRCNL--FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS 278
           +++TY++++   K C +   +EA +  ++M + G++P+  TY+ ++D Y +S   +    
Sbjct: 426 NHVTYNSLVK--KFCEMKNMEEAEKCIKKMVEKGVLPNVETYNTLIDGYGRSCLFDRCFQ 483

Query: 279 LYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMG 338
           + E     G KP+ I++  L     +  +      +L +M   GV PN  +YN L++   
Sbjct: 484 ILEEMEKKGLKPNVISYGCLINCLCKDANILEAEVILGDMVHRGVVPNAQIYNMLIDGSC 543

Query: 339 KAGKPGLARSLFDEMV-----------------------------------ESGLTPDEK 363
            AGK   A   FDEMV                                     GL+ D  
Sbjct: 544 IAGKLKDAFRFFDEMVAREIVPTLVTYNILINGLCKKGKVMEAENLASEITRKGLSFDVI 603

Query: 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
           T  +LI  Y  A   + ALEL+E M+++        Y+ L+  C   GLV   E+++++M
Sbjct: 604 TYNSLISGYSSAGNVQKALELYETMKKSGIKPTLNTYHRLIAGCGKEGLV-LVEKIYQEM 662

Query: 424 KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL---GK 480
            L     PD   Y A+++ Y   G+V  A  L   M   G+  + M   CLI      G+
Sbjct: 663 -LQMNLVPDRVIYNALIHCYVEHGDVQKACSLHSAMEAQGIQPDKMTYNCLILGHFKEGR 721

Query: 481 ARRIDDLVRVFGVSIDRGVKP 501
             ++ +LV    +   RG+ P
Sbjct: 722 MHKVKNLVNDMKI---RGLIP 739



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 134/284 (47%), Gaps = 4/284 (1%)

Query: 177 IKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCN 236
           +K +N+ P   I +N  +  L   +  +  +++  EM       D  TY+T+     +C 
Sbjct: 278 MKVENVEPT-IITFNSLLNGLCRAQMMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCG 336

Query: 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS 296
             D +I   E   + G+   + T S +L+   K G +E+   + ++ + +G  P  + F+
Sbjct: 337 NVDASITLSEEAVRKGVQILDYTCSILLNALCKEGNMEKAEEVLKKFLENGLAPVGVFFN 396

Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356
            +   + + GD +     +++M+++G++PN V YN+L++   +      A     +MVE 
Sbjct: 397 TIVNGYCQVGDINKAYTTIEKMEAVGLRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVEK 456

Query: 357 GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN-MCADIGLVEE 415
           G+ P+ +T   LI  YG++       ++ E M +     + I Y  L+N +C D  ++ E
Sbjct: 457 GVLPNVETYNTLIDGYGRSCLFDRCFQILEEMEKKGLKPNVISYGCLINCLCKDANIL-E 515

Query: 416 AERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
           AE +  DM +     P+   Y  +++     G + +A   F+EM
Sbjct: 516 AEVILGDM-VHRGVVPNAQIYNMLIDGSCIAGKLKDAFRFFDEM 558



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 134/299 (44%), Gaps = 5/299 (1%)

Query: 203 FQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSA 262
           F + E++  E V   I    IT+++++    R  + +EA    E M   G +PD  TY+ 
Sbjct: 272 FNIRERMKVENVEPTI----ITFNSLLNGLCRAQMMEEAQRVLEEMEVYGFVPDRFTYTT 327

Query: 263 ILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG 322
           + D + K G V+  ++L E  V  G +      S+L     + G+ +    VL++    G
Sbjct: 328 LFDGHLKCGNVDASITLSEEAVRKGVQILDYTCSILLNALCKEGNMEKAEEVLKKFLENG 387

Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382
           + P  V +NT++    + G    A +  ++M   GL P+  T  +L+K + + +  ++A 
Sbjct: 388 LAPVGVFFNTIVNGYCQVGDINKAYTTIEKMEAVGLRPNHVTYNSLVKKFCEMKNMEEAE 447

Query: 383 ELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNI 442
           +  ++M E     +   YNTL++      L +   ++ E+M+     KP+  SY  ++N 
Sbjct: 448 KCIKKMVEKGVLPNVETYNTLIDGYGRSCLFDRCFQILEEMEKKGL-KPNVISYGCLINC 506

Query: 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
                N+  A  +  +M   GV  N      LI     A ++ D  R F   + R + P
Sbjct: 507 LCKDANILEAEVILGDMVHRGVVPNAQIYNMLIDGSCIAGKLKDAFRFFDEMVAREIVP 565



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/268 (23%), Positives = 124/268 (46%), Gaps = 4/268 (1%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
            + ++ FF+ + ++ + P   + YN+ +  L    +    E LA+E+    +  D ITY+
Sbjct: 548 LKDAFRFFDEMVAREIVPT-LVTYNILINGLCKKGKVMEAENLASEITRKGLSFDVITYN 606

Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
           ++I+         +A+E +E M K+G+ P   TY  ++    K G V  V  +Y+  +  
Sbjct: 607 SLISGYSSAGNVQKALELYETMKKSGIKPTLNTYHRLIAGCGKEGLVL-VEKIYQEMLQM 665

Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
              PD + ++ L   + E GD      +   M++ G+QP+ + YN L+    K G+    
Sbjct: 666 NLVPDRVIYNALIHCYVEHGDVQKACSLHSAMEAQGIQPDKMTYNCLILGHFKEGRMHKV 725

Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
           ++L ++M   GL P  +T   LI  + K +    A   +  M EN +     + + L+  
Sbjct: 726 KNLVNDMKIRGLIPKTETYDILIVGHCKLKDFDGAYVWYREMFENGFTPSVSICDNLITG 785

Query: 407 CADIGLVEEAERLFEDMKL--SDYCKPD 432
             + G   +A+ +  +M +   D C+ D
Sbjct: 786 LREEGRSHDADVICSEMNMKGKDDCRAD 813



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 118/280 (42%), Gaps = 2/280 (0%)

Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
           E +  +MV   +  +   Y+ +I  +       +A  +F+ M    ++P  VTY+ +++ 
Sbjct: 517 EVILGDMVHRGVVPNAQIYNMLIDGSCIAGKLKDAFRFFDEMVAREIVPTLVTYNILING 576

Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
             K GKV E  +L       G   D I ++ L   +  +G+      + + MK  G++P 
Sbjct: 577 LCKKGKVMEAENLASEITRKGLSFDVITYNSLISGYSSAGNVQKALELYETMKKSGIKPT 636

Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
           L  Y+ L+   GK G   L   ++ EM++  L PD     ALI  Y +    + A  L  
Sbjct: 637 LNTYHRLIAGCGKEGLV-LVEKIYQEMLQMNLVPDRVIYNALIHCYVEHGDVQKACSLHS 695

Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
            M       D + YN L+      G + + + L  DMK+     P   +Y  ++  +   
Sbjct: 696 AMEAQGIQPDKMTYNCLILGHFKEGRMHKVKNLVNDMKIRGLI-PKTETYDILIVGHCKL 754

Query: 447 GNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
            + D A   + EM E G   +V  C  LI  L +  R  D
Sbjct: 755 KDFDGAYVWYREMFENGFTPSVSICDNLITGLREEGRSHD 794


>gi|414591144|tpg|DAA41715.1| TPA: hypothetical protein ZEAMMB73_506058 [Zea mays]
          Length = 521

 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/322 (27%), Positives = 145/322 (45%), Gaps = 17/322 (5%)

Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
           Y + + SL   R    +E L NEM +N +  D   Y+ +I    R      A +  +   
Sbjct: 204 YTILVDSLSTARDISKVEALFNEMKANNVVGDVYLYTAVINAYCRAGNMRRAAKVLDECV 263

Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
             G+ P+E TY  ++  + K G++E    L       G   + I F+ +   +   G  D
Sbjct: 264 GNGVEPNERTYGVLIKGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTMIDGYCRKGMVD 323

Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
               +   M+ +GV+ N+  YNTL          GL R         G+ P+  T T LI
Sbjct: 324 DALKIKAAMEKIGVELNIYTYNTL--------ACGLCR--------MGVVPNYVTYTTLI 367

Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
            I+ K     +A  L+  M E       + Y+ +++  A  G + EAER  ++M+   + 
Sbjct: 368 SIHCKDGDMVEARRLFREMAEKGATPSVLTYSVMIHGYAKKGRIREAERFRKEMEKKGFV 427

Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
            PD Y+Y ++++ +   G VD A++LFEEM + G   NV+  T LI  L K  R +   +
Sbjct: 428 -PDVYTYASLVHGHCVNGKVDVALKLFEEMKQRGTEPNVVAYTALISGLAKEGRSEAAFQ 486

Query: 490 VFGVSIDRGVKPDDRLCGCLLS 511
           ++   +  G+ PDD L   L+ 
Sbjct: 487 LYDDMLKAGLIPDDSLYSALVG 508



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 156/347 (44%), Gaps = 38/347 (10%)

Query: 226 STIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS---GKVEEVLSLYER 282
           S ++    +    D+A    + M + G+  + + Y+++LD Y +    G+V+E+L + E 
Sbjct: 135 SVVVDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNSLLDCYVRQKDDGRVQEILEIMEN 194

Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
               G +     +++L      + D   +  +  EMK+  V  ++ +Y  ++ A  +AG 
Sbjct: 195 ---EGIEATVGTYTILVDSLSTARDISKVEALFNEMKANNVVGDVYLYTAVINAYCRAGN 251

Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
              A  + DE V +G+ P+E+T   LIK + K    + A  L   M+     ++ I++NT
Sbjct: 252 MRRAAKVLDECVGNGVEPNERTYGVLIKGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNT 311

Query: 403 LLNMCADIGLVEEA-------ERLFEDMKLSDY-------CK----PDNYSYTAMLNIYG 444
           +++     G+V++A       E++  ++ +  Y       C+    P+  +YT +++I+ 
Sbjct: 312 MIDGYCRKGMVDDALKIKAAMEKIGVELNIYTYNTLACGLCRMGVVPNYVTYTTLISIHC 371

Query: 445 SGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR 504
             G++  A  LF EM+E G   +V+  + +I    K  RI +  R       +G  PD  
Sbjct: 372 KDGDMVEARRLFREMAEKGATPSVLTYSVMIHGYAKKGRIREAERFRKEMEKKGFVPD-- 429

Query: 505 LCGCLLSVVSLCETSEDVGKVITCLQ--------QANPKLVAFLNLI 543
               + +  SL       GKV   L+           P +VA+  LI
Sbjct: 430 ----VYTYASLVHGHCVNGKVDVALKLFEEMKQRGTEPNVVAYTALI 472



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 105/239 (43%), Gaps = 4/239 (1%)

Query: 253 LMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG-WKPDPIAFSVLGKMFGESGDYDGI 311
           L P  +T+S  L    ++G++ +   L ER + S      P A SV+     +SG  D  
Sbjct: 93  LDPRSLTFS--LLSLRRAGRLADAAGLLERALGSCPGSVSPFAASVVVDGLCKSGRVDDA 150

Query: 312 RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371
           R +L +M   GV  N + YN+LL+   +    G  + + + M   G+     T T L+  
Sbjct: 151 RRLLDDMPRHGVSLNALCYNSLLDCYVRQKDDGRVQEILEIMENEGIEATVGTYTILVDS 210

Query: 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
              AR       L+  M+ N    D  LY  ++N     G +  A ++ ++  + +  +P
Sbjct: 211 LSTARDISKVEALFNEMKANNVVGDVYLYTAVINAYCRAGNMRRAAKVLDEC-VGNGVEP 269

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRV 490
           +  +Y  ++  +   G ++ A  L  +M   GV +N +    +I    +   +DD +++
Sbjct: 270 NERTYGVLIKGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTMIDGYCRKGMVDDALKI 328


>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
 gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
          Length = 737

 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/339 (26%), Positives = 154/339 (45%), Gaps = 20/339 (5%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
           TI  +   KS R      ++E    +M+      + +TY+T+I    +    DEA+  F 
Sbjct: 240 TILVDALCKSARISDASLILE----DMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFN 295

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
           +M +    PD  TY+ ++D Y K  + ++   L +  V  G +P+ I ++ L     +SG
Sbjct: 296 QMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSG 355

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
            Y     + Q M     +P+   +N +++   K G+  LA  LF  M + G  PD  T  
Sbjct: 356 KYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYN 415

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
            +I    +A    DA +L ERM E   P D + YN++++       V+EA  ++E ++  
Sbjct: 416 IMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNG 475

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
            Y   D  + + +++       +D+A +L  EM   G A +V+  T LI    KA ++D 
Sbjct: 476 GY-FLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDK 534

Query: 487 LVRVFGVSIDRGVKPD--------DRLC-------GCLL 510
            +  F   +D+G  P         D+LC       GC+L
Sbjct: 535 SLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCML 573



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 100/404 (24%), Positives = 180/404 (44%), Gaps = 14/404 (3%)

Query: 151 QPTRENALLILNSL-------KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQF 203
           QP  +++    N L       K  Q++Y  F   +     P ++I Y+  +      R F
Sbjct: 125 QPGYKHSKFTCNCLLSAFVRKKKAQEAYDLFKNHRCGLCSP-DSITYSTLINGFCKARDF 183

Query: 204 QLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAI 263
           Q   +L +EM    I   N  Y+TII         D A+  +  M +    P  +TY+ +
Sbjct: 184 QQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRN-CAPSVITYTIL 242

Query: 264 LDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGV 323
           +D   KS ++ +   + E  + +G  P+ + ++ L   F + G+ D    +  +M     
Sbjct: 243 VDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSC 302

Query: 324 QPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALE 383
            P++  YN L++   K  +P     L  EMV+ G  P+  T   L+    K+    DA  
Sbjct: 303 SPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFN 362

Query: 384 LWERM-RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNI 442
           L + M R +  P  F  +N +++M   +G ++ A  LF+ M     C PD Y+Y  M++ 
Sbjct: 363 LAQMMLRRDCKPSHFT-FNLMIDMFCKVGQLDLAYELFQLMT-DRGCLPDIYTYNIMISG 420

Query: 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
                 +D+A +L E M+E G   +V+    ++  L KA ++D+   V+ V  + G   D
Sbjct: 421 ACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLD 480

Query: 503 DRLCGCLLSVVSLCETSEDVGKVITCLQQ--ANPKLVAFLNLIE 544
              C  L+  +      +D  K++  +++  + P +VA+  LI 
Sbjct: 481 VVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIH 524



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 78/333 (23%), Positives = 150/333 (45%), Gaps = 2/333 (0%)

Query: 170 SYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTII 229
           +Y  F  +  +   P +   YN+ +       +     QL   M       D +TY++I+
Sbjct: 395 AYELFQLMTDRGCLP-DIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIV 453

Query: 230 TCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWK 289
           +   + +  DEA E +E +   G   D VT S ++D   KS ++++   L      +G  
Sbjct: 454 SGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSA 513

Query: 290 PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSL 349
           PD +A+++L   F ++   D       EM   G  P ++ Y+ +++ + K+ +      L
Sbjct: 514 PDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCML 573

Query: 350 FDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCAD 409
              M+E G+TPD    T++I    K+    +A EL++ M++       + YN L++    
Sbjct: 574 LKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCK 633

Query: 410 IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVM 469
           +  ++EA  L E M+ SD C PD  +Y ++ + +      D A  LF+ M   G +    
Sbjct: 634 VSRLDEAIHLLEVME-SDGCLPDTVTYNSVFDGFWKSAEHDKAFRLFQAMKSRGCSPTPF 692

Query: 470 GCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
             + L+  L    ++D  + ++  +++ G   D
Sbjct: 693 MYSLLLTKLVAEEKMDQAMEIWEEALEAGADVD 725



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 133/300 (44%), Gaps = 1/300 (0%)

Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS 261
           Q  L  +L   M       D  TY+ +I+ A R N  D+A +  ERM + G  PD VTY+
Sbjct: 391 QLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYN 450

Query: 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
           +I+    K+ +V+E   +YE     G+  D +  S L     +S   D    +L+EM+  
Sbjct: 451 SIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERN 510

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
           G  P++V Y  L+    KA +   + + F EM++ G  P   T + +I    K+   +D 
Sbjct: 511 GSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDG 570

Query: 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
             L + M E     D I+Y ++++        +EA  L++ MK +  C P   +Y  +++
Sbjct: 571 CMLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTG-CAPTVVTYNVLVD 629

Query: 442 IYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
                  +D AI L E M   G   + +    +     K+   D   R+F     RG  P
Sbjct: 630 KLCKVSRLDEAIHLLEVMESDGCLPDTVTYNSVFDGFWKSAEHDKAFRLFQAMKSRGCSP 689



 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 123/265 (46%), Gaps = 3/265 (1%)

Query: 238 FDEAIEWFE-RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS 296
            D+A+++F+    + G    + T + +L  + +  K +E   L++        PD I +S
Sbjct: 112 LDKAVKFFDWCTGQPGYKHSKFTCNCLLSAFVRKKKAQEAYDLFKNHRCGLCSPDSITYS 171

Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356
            L   F ++ D+     +L EM+  G+ P+  VYNT+++ +   G+   A   + +M + 
Sbjct: 172 TLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDM-QR 230

Query: 357 GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEA 416
              P   T T L+    K+    DA  + E M E     + + YNTL+N    +G ++EA
Sbjct: 231 NCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEA 290

Query: 417 ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
             LF  M L + C PD ++Y  +++ Y       +  +L +EM + G   N +    L+ 
Sbjct: 291 VVLFNQM-LENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMD 349

Query: 477 CLGKARRIDDLVRVFGVSIDRGVKP 501
            L K+ +  D   +  + + R  KP
Sbjct: 350 SLVKSGKYIDAFNLAQMMLRRDCKP 374


>gi|297794571|ref|XP_002865170.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311005|gb|EFH41429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 468

 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/345 (25%), Positives = 161/345 (46%), Gaps = 43/345 (12%)

Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLA--NEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
           + I YN  +K   + R   + E  A    M    IE D  TY+++I+ A +  + +  ++
Sbjct: 47  DVITYNTLIKG--YSRFIGIDEAYAVTRRMREAGIEPDVATYNSLISGAAKNLMLNRVLQ 104

Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS-LYERGVASGWKPDPIAFSVLGKMF 302
            F+ M  +GL PD  +Y+ ++  Y + GK  E    L+E    +G  P    +++L    
Sbjct: 105 LFDEMLHSGLSPDMWSYNTLMSCYFRLGKHGEAFRILHEDIRLAGLVPGVDTYNILLDAL 164

Query: 303 GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
            +SG  D    + + +KS  V+P L+ YN L+  + K+ + G    +  E+ ++G TP+ 
Sbjct: 165 CKSGHTDNAIELFKHLKSR-VKPELMTYNILINGLCKSRRVGSVNWMLRELRKAGYTPNA 223

Query: 363 KTLTALIKIYGKARWAKDALELWERMRENKWPMD-------------------------- 396
            T T ++K+Y K +  +  LEL+ +M++  +  D                          
Sbjct: 224 VTYTTMLKMYFKTKRIEKGLELFLKMKKEGYTFDGYANCAVVSALIKTGRAEEAYGCMNE 283

Query: 397 ----------FILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
                      + YNTLLNM    G ++  + L E++++    KPD+Y++T ++N     
Sbjct: 284 LVRSGTRSQDIVSYNTLLNMYFKDGNLDAVDDLLEEIEMKGL-KPDDYTHTIIVNGLLKI 342

Query: 447 GNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           G+   A +    + E+G+  ++  C CLI  L KA  +D  +R+F
Sbjct: 343 GHTGGAEKHLARIGEMGMQPSIATCNCLIDGLCKAGHVDRAMRLF 387



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 101/229 (44%), Gaps = 3/229 (1%)

Query: 264 LDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGV 323
           +D   K   +E+  +L   G+  G  PD I ++ L K +      D    V + M+  G+
Sbjct: 20  VDSLCKFRNLEKAETLLIDGIRLGVLPDVITYNTLIKGYSRFIGIDEAYAVTRRMREAGI 79

Query: 324 QPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALE 383
           +P++  YN+L+    K         LFDEM+ SGL+PD  +   L+  Y +     +A  
Sbjct: 80  EPDVATYNSLISGAAKNLMLNRVLQLFDEMLHSGLSPDMWSYNTLMSCYFRLGKHGEAFR 139

Query: 384 -LWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNI 442
            L E +R          YN LL+     G  + A  LF+ +K     KP+  +Y  ++N 
Sbjct: 140 ILHEDIRLAGLVPGVDTYNILLDALCKSGHTDNAIELFKHLK--SRVKPELMTYNILING 197

Query: 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
                 V +   +  E+ + G   N +  T +++   K +RI+  + +F
Sbjct: 198 LCKSRRVGSVNWMLRELRKAGYTPNAVTYTTMLKMYFKTKRIEKGLELF 246



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 52/233 (22%), Positives = 95/233 (40%), Gaps = 42/233 (18%)

Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
            F  +KS+     E + YN+ +  L   R+   +  +  E+       + +TY+T++   
Sbjct: 176 LFKHLKSR--VKPELMTYNILINGLCKSRRVGSVNWMLRELRKAGYTPNAVTYTTMLKMY 233

Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP-D 291
            +    ++ +E F +M K G   D     A++    K+G+ EE        V SG +  D
Sbjct: 234 FKTKRIEKGLELFLKMKKEGYTFDGYANCAVVSALIKTGRAEEAYGCMNELVRSGTRSQD 293

Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQE--MKSL---------------------------- 321
            ++++ L  M+ + G+ D +  +L+E  MK L                            
Sbjct: 294 IVSYNTLLNMYFKDGNLDAVDDLLEEIEMKGLKPDDYTHTIIVNGLLKIGHTGGAEKHLA 353

Query: 322 -----GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
                G+QP++   N L++ + KAG    A  LF  M       DE T T+++
Sbjct: 354 RIGEMGMQPSIATCNCLIDGLCKAGHVDRAMRLFASME----VRDEFTYTSVV 402


>gi|356558306|ref|XP_003547448.1| PREDICTED: pentatricopeptide repeat-containing protein At5g57250,
           mitochondrial-like [Glycine max]
          Length = 1064

 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 126/247 (51%), Gaps = 6/247 (2%)

Query: 212 EMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG 271
           EMV   I  D ++Y+ ++    +    +++  +  +M K G  P++VTYSAI+  Y K G
Sbjct: 255 EMVEKGIGHDFVSYTVLVDGFSKLGDVEKSFTFLAKMIKEGHRPNKVTYSAIMSAYCKKG 314

Query: 272 KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYN 331
           KVEE   ++E     G   D   F +L   FG  GD+D +  +  EM+  G+ P++V YN
Sbjct: 315 KVEEAFGVFESMKDLGIDLDEYVFVILIDGFGRIGDFDKVFCLFDEMERSGISPSVVAYN 374

Query: 332 TLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN 391
            ++  + K G+   A    DE++++ +  D  T + L+  Y +       L+   R+ E+
Sbjct: 375 AVMNGLSKHGRTSEA----DELLKN-VAADVITYSTLLHGYMEEENIPGILQTKRRLEES 429

Query: 392 KWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDN 451
              MD ++ N L+     +G  E+   L++ M   D   P++ +Y  M++ Y   G ++ 
Sbjct: 430 GISMDVVMCNVLIRALFMMGAFEDVYALYKGMPEMDLI-PNSVTYCTMIDGYCKVGRIEE 488

Query: 452 AIELFEE 458
           A+E+F+E
Sbjct: 489 ALEVFDE 495



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 113/250 (45%), Gaps = 9/250 (3%)

Query: 242 IEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKM 301
           ++W ER    GL  D V YSA    Y +   + EV       V  G   D ++++VL   
Sbjct: 218 VQWMER---EGLGLDVVLYSAWACGYVEERVLGEVFGRMREMVEKGIGHDFVSYTVLVDG 274

Query: 302 FGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD 361
           F + GD +     L +M   G +PN V Y+ ++ A  K GK   A  +F+ M + G+  D
Sbjct: 275 FSKLGDVEKSFTFLAKMIKEGHRPNKVTYSAIMSAYCKKGKVEEAFGVFESMKDLGIDLD 334

Query: 362 EKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFE 421
           E     LI  +G+         L++ M  +      + YN ++N  +  G   EA+ L +
Sbjct: 335 EYVFVILIDGFGRIGDFDKVFCLFDEMERSGISPSVVAYNAVMNGLSKHGRTSEADELLK 394

Query: 422 DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
           ++        D  +Y+ +L+ Y    N+   ++    + E G++++V+ C  LI+ L   
Sbjct: 395 NV------AADVITYSTLLHGYMEEENIPGILQTKRRLEESGISMDVVMCNVLIRALFMM 448

Query: 482 RRIDDLVRVF 491
              +D+  ++
Sbjct: 449 GAFEDVYALY 458



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 84/165 (50%), Gaps = 1/165 (0%)

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
           G+  N+V+YN+++  +   G+   A  L D + +  L P E T   +I    +  +  DA
Sbjct: 740 GMNLNIVIYNSIINGLCHEGRLIEAFRLLDSIEKLNLVPSEITYATVIYALCREGFLLDA 799

Query: 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
             ++ +M    +     +YN+LL+  +  G +E+A  L  DM+ + Y +PD+ + +A++N
Sbjct: 800 EHVFSKMVLKGFQPKVQVYNSLLDGISKFGQLEKAFELLNDME-TKYIEPDSLTISAVIN 858

Query: 442 IYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
            Y   G++  A+E + +     ++ +  G   LI+ L    R+++
Sbjct: 859 CYCQKGDMHGALEFYYKFKRKDMSPDFFGFLYLIRGLCTKGRMEE 903



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 88/199 (44%)

Query: 225 YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
           Y+ +I    +    ++A++    + K G+  + V Y++I++     G++ E   L +   
Sbjct: 713 YAIVIDGLCKGGYLNKALDLCAFVEKKGMNLNIVIYNSIINGLCHEGRLIEAFRLLDSIE 772

Query: 285 ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344
                P  I ++ +       G      +V  +M   G QP + VYN+LL+ + K G+  
Sbjct: 773 KLNLVPSEITYATVIYALCREGFLLDAEHVFSKMVLKGFQPKVQVYNSLLDGISKFGQLE 832

Query: 345 LARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
            A  L ++M    + PD  T++A+I  Y +      ALE + + +      DF  +  L+
Sbjct: 833 KAFELLNDMETKYIEPDSLTISAVINCYCQKGDMHGALEFYYKFKRKDMSPDFFGFLYLI 892

Query: 405 NMCADIGLVEEAERLFEDM 423
                 G +EEA  +  +M
Sbjct: 893 RGLCTKGRMEEARSVLREM 911



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 4/170 (2%)

Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
           G++PN+V    L+ A+ K G+ G    L   M   GL  D    +A    Y + R   + 
Sbjct: 190 GLRPNVVTCTALVGALCKMGRVGEVCGLVQWMEREGLGLDVVLYSAWACGYVEERVLGEV 249

Query: 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
                 M E     DF+ Y  L++  + +G VE++      M + +  +P+  +Y+A+++
Sbjct: 250 FGRMREMVEKGIGHDFVSYTVLVDGFSKLGDVEKSFTFLAKM-IKEGHRPNKVTYSAIMS 308

Query: 442 IYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
            Y   G V+ A  +FE M +LG+ ++      LI   G   RI D  +VF
Sbjct: 309 AYCKKGKVEEAFGVFESMKDLGIDLDEYVFVILIDGFG---RIGDFDKVF 355



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 83/195 (42%), Gaps = 16/195 (8%)

Query: 185 METIFYNVTMKSL----RFGRQFQLIEQLAN-EMVSNEIELDNITYSTIITCAKRCNLFD 239
           +  + YN  +  L    R    F+L++ +    +V +EI     TY+T+I    R     
Sbjct: 743 LNIVIYNSIINGLCHEGRLIEAFRLLDSIEKLNLVPSEI-----TYATVIYALCREGFLL 797

Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
           +A   F +M   G  P    Y+++LD  +K G++E+   L         +PD +  S + 
Sbjct: 798 DAEHVFSKMVLKGFQPKVQVYNSLLDGISKFGQLEKAFELLNDMETKYIEPDSLTISAVI 857

Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
             + + GD  G      + K   + P+   +  L+  +   G+   ARS+  EM++S   
Sbjct: 858 NCYCQKGDMHGALEFYYKFKRKDMSPDFFGFLYLIRGLCTKGRMEEARSVLREMLQS--- 914

Query: 360 PDEKTLTALIKIYGK 374
              K +  LI I  K
Sbjct: 915 ---KNVVELINIVNK 926



 Score = 47.4 bits (111), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 69/312 (22%), Positives = 128/312 (41%), Gaps = 21/312 (6%)

Query: 201 RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTY 260
           R+F LI    +++ SN    +  T S +     + + F+EA ++             +T+
Sbjct: 36  RKFNLITHFFSQLKSNNAPTNRRTLSLLTWSLLKSHKFEEAEQFMHS-------HTHITH 88

Query: 261 SAILDVYAKS-GKVEEVLSLYERGVAS-GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEM 318
           S++ D   +     E+ LS+ +R V   G  P    F ++       G       VL+ M
Sbjct: 89  SSMWDSLIQGLHDPEKALSVLQRCVRDRGVLPSSSTFCLVVHKLSSKGLMGRAIEVLELM 148

Query: 319 KSLGVQPNL--VVYNTLLEAMGKAGKPGLARSLFDEMVE-SGLTPDEKTLTALIKIYGKA 375
              GV+      V ++++    + GKP LA   F  + +  GL P+  T TAL+    K 
Sbjct: 149 AGDGVRYPFDDFVCSSVISGFCRIGKPELALGFFKNVTDCGGLRPNVVTCTALVGALCKM 208

Query: 376 RWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEE--AERLFEDMK--LSDYCKP 431
               +   L + M      +D +LY+         G VEE     +F  M+  +      
Sbjct: 209 GRVGEVCGLVQWMEREGLGLDVVLYSAW-----ACGYVEERVLGEVFGRMREMVEKGIGH 263

Query: 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
           D  SYT +++ +   G+V+ +     +M + G   N +  + ++    K  ++++   VF
Sbjct: 264 DFVSYTVLVDGFSKLGDVEKSFTFLAKMIKEGHRPNKVTYSAIMSAYCKKGKVEEAFGVF 323

Query: 492 GVSIDRGVKPDD 503
               D G+  D+
Sbjct: 324 ESMKDLGIDLDE 335



 Score = 47.0 bits (110), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 75/323 (23%), Positives = 127/323 (39%), Gaps = 90/323 (27%)

Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITY 225
           + K +  F+ ++   + P   + YN  M  L + GR  +     A+E++ N +  D ITY
Sbjct: 351 FDKVFCLFDEMERSGISP-SVVAYNAVMNGLSKHGRTSE-----ADELLKN-VAADVITY 403

Query: 226 STI------------ITCAKR-------------CNL----------FDEAIEWFERMYK 250
           ST+            I   KR             CN+          F++    ++ M +
Sbjct: 404 STLLHGYMEEENIPGILQTKRRLEESGISMDVVMCNVLIRALFMMGAFEDVYALYKGMPE 463

Query: 251 TGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDG 310
             L+P+ VTY  ++D Y K G++EE L +                            +D 
Sbjct: 464 MDLIPNSVTYCTMIDGYCKVGRIEEALEV----------------------------FDE 495

Query: 311 IRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK 370
            R  L          +L  YN+++  + K G   +A     E+   GL  D  T   L K
Sbjct: 496 FRKTL--------ISSLACYNSIINGLCKNGMTEMAIEALLELNHEGLELDIGTFRMLTK 547

Query: 371 IYGKARWAKDALELWERMRENKWPMDF--ILYNTLLNMCADIGLVEEAERLFEDMK---L 425
              +    K AL+L  RM E   P  +  +  +++  +C   GL+++A  ++  MK   L
Sbjct: 548 TIFEENNTKKALDLVYRM-EGLGPDIYSSVCNDSIFLLCQR-GLLDDANHMWMMMKKKGL 605

Query: 426 SDYCKPDNYSYTAMLNIYGSGGN 448
           S  C     SY ++L  + + GN
Sbjct: 606 SVTCN----SYYSILRGHLNNGN 624


>gi|255539805|ref|XP_002510967.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550082|gb|EEF51569.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 774

 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 151/316 (47%), Gaps = 4/316 (1%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
           TI  N  +KS   GR  +    L ++M+ N    D  T++T+I    +  L   A++   
Sbjct: 348 TILINGYVKS---GRLDEANAFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGSAVDMVN 404

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
            M   G  P+ +TY+ +LD + K  ++EE   +     A G++ + + ++VL +   ++G
Sbjct: 405 DMSANGCTPNLITYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNG 464

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
                  +L EM   G +P++  +NTL+  + K  +   A +L+ +M+  G+  +  T  
Sbjct: 465 KVPKALDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVTYN 524

Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
            LI  + +    ++AL+L   M     P+D I YN L+     +G  E+A  LF++M   
Sbjct: 525 TLIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEMVRK 584

Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
           D   P N S   ++N     G V NA+EL  +M   G+A +V+    LI  L K   I +
Sbjct: 585 DLV-PSNISCNLLINGLCRVGKVCNALELLRDMIHRGLAPDVVTYNSLINGLCKMGNIRE 643

Query: 487 LVRVFGVSIDRGVKPD 502
              +F      G++PD
Sbjct: 644 AFNLFNKLQAEGIQPD 659



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 88/402 (21%), Positives = 152/402 (37%), Gaps = 71/402 (17%)

Query: 170 SYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTII 229
           S   F W  SQ  +      Y+V +  L   ++F++I++L  ++    I      +  I+
Sbjct: 85  SMAIFQWAGSQKGYCHTFDVYHVLIDKLGAAKEFKVIDKLLLQIKEEGIAFRESLFICIM 144

Query: 230 TCAKRCNLFDEAIEWFERMYKTGLM-PDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
               R NL  +A      M       P   +Y+ +LD+   +       +++   ++ G 
Sbjct: 145 KYYGRANLPGQATRMLLDMKGVYCCEPTFKSYNVVLDILVSANCPSVAANVFYEMLSKGV 204

Query: 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348
            P    F V+ K      + D    +L++M   G  PN VVY TL+ A+ K  +   A  
Sbjct: 205 IPTVYTFGVVMKALCMVNEVDNACSLLRDMTKHGCVPNSVVYQTLIHALSKRDRVNEALK 264

Query: 349 LFDEMVESGLTPDEKTLTALIKIYGKARWAK--DALELWERMRENKWPMDFILYNTLLNM 406
           L +EM   G  PD  T   +I  YG  R  +  +  +L +RM    +  + I Y  L+N 
Sbjct: 265 LLEEMFLMGCLPDVDTFNDVI--YGLCRLNRIHEGAKLVDRMLFRGFTPNDITYGVLMNG 322

Query: 407 CADIGLVEEAERLFE-------------------------------DMKLSDYCKPDNY- 434
              +G V+EA+ L                                 D  + + C+PD + 
Sbjct: 323 LCRVGKVDEAQVLLNKVPTPNDVHFTILINGYVKSGRLDEANAFLYDKMIKNGCRPDVFT 382

Query: 435 ----------------------------------SYTAMLNIYGSGGNVDNAIELFEEMS 460
                                             +YT +L+ +     ++ A  +  EMS
Sbjct: 383 FNTLIHGLCKKGLMGSAVDMVNDMSANGCTPNLITYTTLLDGFCKKNQLEEAGYVLNEMS 442

Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
             G  +N+MG   L++ L K  ++   + + G   D+G KPD
Sbjct: 443 AKGFELNIMGYNVLLRALCKNGKVPKALDMLGEMSDKGCKPD 484



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 97/204 (47%), Gaps = 1/204 (0%)

Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
           L  +M+ + +  + +TY+T+I    R     EA++    M   G   DE+TY+ ++  + 
Sbjct: 507 LYRDMLLDGVIANTVTYNTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYNGLIKAFC 566

Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
           K G  E+ L L++  V     P  I+ ++L       G       +L++M   G+ P++V
Sbjct: 567 KLGATEKALGLFDEMVRKDLVPSNISCNLLINGLCRVGKVCNALELLRDMIHRGLAPDVV 626

Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
            YN+L+  + K G    A +LF+++   G+ PD  T   LI  + +A    DA  L  R 
Sbjct: 627 TYNSLINGLCKMGNIREAFNLFNKLQAEGIQPDAITYNTLICWHCRAGMFDDAYLLLLRG 686

Query: 389 RENKW-PMDFILYNTLLNMCADIG 411
            EN + P D   Y  + N   +IG
Sbjct: 687 VENAFIPNDVTWYILVSNFIKEIG 710



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 114/239 (47%), Gaps = 2/239 (0%)

Query: 183 FPMETIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEA 241
           F +  + YNV +++L + G+  + ++ L  EM     + D  T++T+I    + +  ++A
Sbjct: 446 FELNIMGYNVLLRALCKNGKVPKALDMLG-EMSDKGCKPDIFTFNTLIFGLCKVDRKEDA 504

Query: 242 IEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKM 301
           +  +  M   G++ + VTY+ ++  + + G ++E L L    +  G   D I ++ L K 
Sbjct: 505 LALYRDMLLDGVIANTVTYNTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYNGLIKA 564

Query: 302 FGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD 361
           F + G  +    +  EM    + P+ +  N L+  + + GK   A  L  +M+  GL PD
Sbjct: 565 FCKLGATEKALGLFDEMVRKDLVPSNISCNLLINGLCRVGKVCNALELLRDMIHRGLAPD 624

Query: 362 EKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLF 420
             T  +LI    K    ++A  L+ +++      D I YNTL+      G+ ++A  L 
Sbjct: 625 VVTYNSLINGLCKMGNIREAFNLFNKLQAEGIQPDAITYNTLICWHCRAGMFDDAYLLL 683



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 89/188 (47%)

Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
           T+ YN  + +   G   Q   +L N+M+     LD ITY+ +I    +    ++A+  F+
Sbjct: 520 TVTYNTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYNGLIKAFCKLGATEKALGLFD 579

Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
            M +  L+P  ++ + +++   + GKV   L L    +  G  PD + ++ L     + G
Sbjct: 580 EMVRKDLVPSNISCNLLINGLCRVGKVCNALELLRDMIHRGLAPDVVTYNSLINGLCKMG 639

Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
           +      +  ++++ G+QP+ + YNTL+    +AG    A  L    VE+   P++ T  
Sbjct: 640 NIREAFNLFNKLQAEGIQPDAITYNTLICWHCRAGMFDDAYLLLLRGVENAFIPNDVTWY 699

Query: 367 ALIKIYGK 374
            L+  + K
Sbjct: 700 ILVSNFIK 707


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.319    0.134    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,968,077,524
Number of Sequences: 23463169
Number of extensions: 459508604
Number of successful extensions: 1523669
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 8321
Number of HSP's successfully gapped in prelim test: 4271
Number of HSP's that attempted gapping in prelim test: 1321504
Number of HSP's gapped (non-prelim): 75384
length of query: 710
length of database: 8,064,228,071
effective HSP length: 150
effective length of query: 560
effective length of database: 8,839,720,017
effective search space: 4950243209520
effective search space used: 4950243209520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 81 (35.8 bits)