BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005178
(710 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LS25|PP420_ARATH Pentatricopeptide repeat-containing protein At5g46580,
chloroplastic OS=Arabidopsis thaliana GN=At5g46580 PE=2
SV=1
Length = 711
Score = 1072 bits (2772), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 514/714 (71%), Positives = 610/714 (85%), Gaps = 9/714 (1%)
Query: 1 MAASLSTALDVHLSIPKSDTKRPIFLTKPT--RRSHPIKINISCNSKSSENVAAESPNPE 58
MA L+TA+DV + SDTK+ KP+ R+S K+NISC+S E P
Sbjct: 1 MATVLTTAIDVCFNPQNSDTKKHSLFLKPSLFRQSRSRKLNISCSSLKQPKTLEEEP-IT 59
Query: 59 TKTLSLSEQLKPLSSTTLSPTKNDRTPLLSKPKSTWVNPTKPRRSVLSLQRQKRSTYSYN 118
TKT SLSEQLKPLS+TTL + ++T +LSKPKS WVNPT+P+RSVLSLQRQKRS YSYN
Sbjct: 60 TKTPSLSEQLKPLSATTL---RQEQTQILSKPKSVWVNPTRPKRSVLSLQRQKRSAYSYN 116
Query: 119 PRVRDLKLFARKLNDCDNTEEA-FLRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWI 177
P+++DL+ FA KLN TE++ FL + EIPH P R+NALL+LNSL+ WQK++ FFNW+
Sbjct: 117 PQIKDLRAFALKLNSSIFTEKSEFLSLLDEIPHPPNRDNALLVLNSLREWQKTHTFFNWV 176
Query: 178 KSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNL 237
KS++LFPMETIFYNVTMKSLRFGRQFQLIE++A EMV + +ELDNITYSTIITCAKRCNL
Sbjct: 177 KSKSLFPMETIFYNVTMKSLRFGRQFQLIEEMALEMVKDGVELDNITYSTIITCAKRCNL 236
Query: 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
+++AIEWFERMYKTGLMPDEVTYSAILDVY+KSGKVEEVLSLYER VA+GWKPD IAFSV
Sbjct: 237 YNKAIEWFERMYKTGLMPDEVTYSAILDVYSKSGKVEEVLSLYERAVATGWKPDAIAFSV 296
Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
LGKMFGE+GDYDGIRYVLQEMKS+ V+PN+VVYNTLLEAMG+AGKPGLARSLF+EM+E+G
Sbjct: 297 LGKMFGEAGDYDGIRYVLQEMKSMDVKPNVVVYNTLLEAMGRAGKPGLARSLFNEMLEAG 356
Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417
LTP+EKTLTAL+KIYGKARWA+DAL+LWE M+ KWPMDFILYNTLLNMCADIGL EEAE
Sbjct: 357 LTPNEKTLTALVKIYGKARWARDALQLWEEMKAKKWPMDFILYNTLLNMCADIGLEEEAE 416
Query: 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
RLF DMK S C+PDN+SYTAMLNIYGSGG + A+ELFEEM + GV +NVMGCTCL+QC
Sbjct: 417 RLFNDMKESVQCRPDNFSYTAMLNIYGSGGKAEKAMELFEEMLKAGVQVNVMGCTCLVQC 476
Query: 478 LGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLV 537
LGKA+RIDD+V VF +SI RGVKPDDRLCGCLLSV++LCE+SED KV+ CL++AN KLV
Sbjct: 477 LGKAKRIDDVVYVFDLSIKRGVKPDDRLCGCLLSVMALCESSEDAEKVMACLERANKKLV 536
Query: 538 AFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGT 597
F+NLI D T +E +KEEF+ VI T+V+ARRPFCNCLIDICR N +ERAHELLYLGT
Sbjct: 537 TFVNLIVDEKTEYETVKEEFKLVINATQVEARRPFCNCLIDICRGNNRHERAHELLYLGT 596
Query: 598 LYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQLFLAETGTG 657
L+GLYPGLHNKT+ EWSLDVRSLSVGAA+TALEEWM TLA I+ R+E LP+LFLA+TGTG
Sbjct: 597 LFGLYPGLHNKTIKEWSLDVRSLSVGAAETALEEWMRTLANIIKRQEELPELFLAQTGTG 656
Query: 658 THKFSQGLATAFASHVNKLAAPFRQSEGKAGCFVATREDLVSWVQAR-PSSITT 710
TH+FSQGLA +FA H+ +L+APFRQS+ + G FVAT+EDLVSW++++ P +T+
Sbjct: 657 THRFSQGLANSFALHLQQLSAPFRQSD-RPGIFVATKEDLVSWLESKFPPLVTS 709
>sp|Q8GWE0|PP314_ARATH Pentatricopeptide repeat-containing protein At4g16390,
chloroplastic OS=Arabidopsis thaliana GN=P67 PE=1 SV=3
Length = 702
Score = 459 bits (1181), Expect = e-128, Method: Compositional matrix adjust.
Identities = 239/618 (38%), Positives = 371/618 (60%), Gaps = 11/618 (1%)
Query: 93 TWVNPTKPRRSVLSLQRQKRSTYSYNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQP 152
WVNP PR S L R+K SY+ R L A L+ C E IT +
Sbjct: 88 VWVNPKSPRASQL---RRK----SYDSRYSSLIKLAESLDACKPNEADVCDVITGFGGKL 140
Query: 153 TRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANE 212
++A++ LN++ + + N + E I YNVTMK R + + E+L +E
Sbjct: 141 FEQDAVVTLNNMTNPETAPLVLNNLLETMKPSREVILYNVTMKVFRKSKDLEKSEKLFDE 200
Query: 213 MVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK 272
M+ I+ DN T++TII+CA++ + A+EWFE+M G PD VT +A++D Y ++G
Sbjct: 201 MLERGIKPDNATFTTIISCARQNGVPKRAVEWFEKMSSFGCEPDNVTMAAMIDAYGRAGN 260
Query: 273 VEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNT 332
V+ LSLY+R W+ D + FS L +++G SG+YDG + +EMK+LGV+PNLV+YN
Sbjct: 261 VDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKALGVKPNLVIYNR 320
Query: 333 LLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENK 392
L+++MG+A +P A+ ++ +++ +G TP+ T AL++ YG+AR+ DAL ++ M+E
Sbjct: 321 LIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDALAIYREMKEKG 380
Query: 393 WPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNA 452
+ ILYNTLL+MCAD V+EA +F+DMK + C PD++++++++ +Y G V A
Sbjct: 381 LSLTVILYNTLLSMCADNRYVDEAFEIFQDMKNCETCDPDSWTFSSLITVYACSGRVSEA 440
Query: 453 IELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSV 512
+M E G + T +IQC GKA+++DD+VR F ++ G+ PDDR CGCLL+V
Sbjct: 441 EAALLQMREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITPDDRFCGCLLNV 500
Query: 513 VSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENI-KEEFRNVIKDTEVDARRP 571
++ SE++GK+I C+++A PKL + ++ + E + K+E +I D ++
Sbjct: 501 MTQ-TPSEEIGKLIGCVEKAKPKLGQVVKMLVEEQNCEEGVFKKEASELIDSIGSDVKKA 559
Query: 572 FCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALEE 631
+ NCLID+C N N ERA E+L LG Y +Y GL +K+ +WSL ++SLS+GAA TAL
Sbjct: 560 YLNCLIDLCVNLNKLERACEILQLGLEYDIYTGLQSKSATQWSLHLKSLSLGAALTALHV 619
Query: 632 WMWTLAKIVLRE-EVLPQLFLAETGTGTHKFS-QGLATAFASHVNKLAAPFRQSEGKAGC 689
WM L++ L E P L TG G HK+S +GLA F SH+ +L APF ++ K G
Sbjct: 620 WMNDLSEAALESGEEFPPLLGINTGHGKHKYSDKGLAAVFESHLKELNAPFHEAPDKVGW 679
Query: 690 FVATREDLVSWVQARPSS 707
F+ T +W+++R S+
Sbjct: 680 FLTTSVAAKAWLESRRSA 697
>sp|Q8GYP6|PPR49_ARATH Pentatricopeptide repeat-containing protein At1g18900
OS=Arabidopsis thaliana GN=At1g18900 PE=1 SV=1
Length = 860
Score = 190 bits (482), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 167/729 (22%), Positives = 299/729 (41%), Gaps = 83/729 (11%)
Query: 13 LSIPKS---DTKRPIFLTKPT-----RRSHPIKINISCNSKSSENVAAESPNP------E 58
+PKS D RPI K + RR H KI +K S +P+ E
Sbjct: 164 FGLPKSCMVDPTRPISSVKSSNVKAIRREHFAKIYPRSAAKESSVGTTRNPSSNFRGAKE 223
Query: 59 TKTLSLSEQLKPLSSTTLS---PTKND----RTPLLSKPK--STWVNPTKPRRSVLSLQR 109
+ + + +S++ + PT N+ RT +L +P S P+ S + + +
Sbjct: 224 AERTGFVKGFRQVSNSVVGKSLPTTNNTYGKRTSVLQRPHIDSNRFVPSGFSNSSVEMMK 283
Query: 110 QKRSTYSYNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTRENALL---------- 159
T L +R+ + + E + P E AL
Sbjct: 284 GPSGT----------ALTSRQYCNSGHIVENVSSVLRRFRWGPAAEEALQNLGLRIDAYQ 333
Query: 160 ---ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSN 216
+L + + + FF W+K Q F + Y + +L +QF I +L +EMV +
Sbjct: 334 ANQVLKQMNDYGNALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRD 393
Query: 217 EIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV 276
+ + +TY+ +I R N +EA+ F +M + G PD VTY ++D++AK+G ++
Sbjct: 394 GCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIA 453
Query: 277 LSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA 336
+ +Y+R A G PD +SV+ G++G + EM G PNLV YN +++
Sbjct: 454 MDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDL 513
Query: 337 MGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMD 396
KA A L+ +M +G PD+ T + ++++ G + ++A ++ M++ W D
Sbjct: 514 HAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPD 573
Query: 397 FILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELF 456
+Y L+++ G VE+A + ++ M L +P+ + ++L+ + + A EL
Sbjct: 574 EPVYGLLVDLWGKAGNVEKAWQWYQAM-LHAGLRPNVPTCNSLLSTFLRVNKIAEAYELL 632
Query: 457 EEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLC 516
+ M LG+ ++ T L+ C R K D CG L++
Sbjct: 633 QNMLALGLRPSLQTYTLLLSCCTDGRS----------------KLDMGFCGQLMA----- 671
Query: 517 ETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCL 576
T + + A P + N F +++ + +++R + +
Sbjct: 672 STGHPAHMFLLKMPAAGP-----------DGENVRNHANNFLDLMHSEDRESKRGLVDAV 720
Query: 577 IDICRNRNLNERAHELLYLGTLYGLYP-GLHNKTLDEWSLDVRSLSVGAAQTALEEWMWT 635
+D E A + + ++P L K+ W +++ +S G A TAL +
Sbjct: 721 VDFLHKSGQKEEAGSVWEVAAQKNVFPDALREKSCSYWLINLHVMSEGTAVTALSRTLAW 780
Query: 636 LAKIVLREEVLPQLFLAETGTGTHKFSQGLA---TAFASHVNKLAAPFRQSEGKAGCFVA 692
K +L P TG G G + A +N +PF G +GCFV
Sbjct: 781 FRKQMLASGTCPSRIDIVTGWGRRSRVTGTSMVRQAVEELLNIFGSPFFTESGNSGCFVG 840
Query: 693 TREDLVSWV 701
+ E L W+
Sbjct: 841 SGEPLNRWL 849
>sp|Q9SSF9|PP123_ARATH Pentatricopeptide repeat-containing protein At1g74750
OS=Arabidopsis thaliana GN=At1g74750 PE=2 SV=1
Length = 855
Score = 177 bits (450), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 117/488 (23%), Positives = 225/488 (46%), Gaps = 8/488 (1%)
Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
D TY+T++ R F E + + M + G P+ VTY+ ++ Y ++ ++E ++++
Sbjct: 358 DGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLKEAMNVF 417
Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
+ +G +PD + + L + ++G D + Q M+ G+ P+ Y+ ++ +GKA
Sbjct: 418 NQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINCLGKA 477
Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
G A LF EMV G TP+ T +I ++ KAR + AL+L+ M+ + D + Y
Sbjct: 478 GHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTY 537
Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
+ ++ + G +EEAE +F +M+ ++ PD Y +++++G GNVD A + ++ M
Sbjct: 538 SIVMEVLGHCGFLEEAEGVFAEMQRKNWV-PDEPVYGLLVDLWGKAGNVDKAWQWYQAML 596
Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSE 520
+ G+ NV C L+ + R+ + + + G+ P + LLS + ++
Sbjct: 597 QAGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLALGLHPSLQTYTLLLSCCTDARSNF 656
Query: 521 DVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEE---FRNVIKDTEVDARRPFCNCLI 577
D+G + + FL + + +++ F + + + +++R + ++
Sbjct: 657 DMGFCGQLMAVSGHPAHMFLLKMPPAGPDGQKVRDHVSNFLDFMHSEDRESKRGLMDAVV 716
Query: 578 DICRNRNLNERAHELLYLGTLYGLYP-GLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTL 636
D L E A + + +YP L K+ W +++ +S G A AL +
Sbjct: 717 DFLHKSGLKEEAGSVWEVAAGKNVYPDALREKSYSYWLINLHVMSEGTAVIALSRTLAWF 776
Query: 637 AKIVLREEVLPQLFLAETGTGTHKFSQGLA---TAFASHVNKLAAPFRQSEGKAGCFVAT 693
K +L P TG G G + A +N PF G +GCFV +
Sbjct: 777 RKQMLVSGDCPSRIDIVTGWGRRSRVTGTSMVRQAVEELLNIFNFPFFTENGNSGCFVGS 836
Query: 694 REDLVSWV 701
E L +W+
Sbjct: 837 GEPLKNWL 844
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 80/181 (44%), Gaps = 36/181 (19%)
Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
G + + Y T++ +G+A + G L DEMV G P+ T LI YG+A + K
Sbjct: 354 GFKHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLK-- 411
Query: 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
EA +F M+ + C+PD +Y +++
Sbjct: 412 ---------------------------------EAMNVFNQMQEAG-CEPDRVTYCTLID 437
Query: 442 IYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
I+ G +D A+++++ M E G++ + + +I CLGKA + R+F + +G P
Sbjct: 438 IHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTP 497
Query: 502 D 502
+
Sbjct: 498 N 498
>sp|Q9FLD8|PP408_ARATH Pentatricopeptide repeat-containing protein At5g39980,
chloroplastic OS=Arabidopsis thaliana GN=At5g39980 PE=2
SV=1
Length = 678
Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 109/416 (26%), Positives = 198/416 (47%), Gaps = 5/416 (1%)
Query: 96 NPTKPRRSVLSLQRQKRSTY-SYNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTR 154
N T +++ +R +RS + +N D+ ++ N +E F T Q +
Sbjct: 66 NTTSSFQALRKHRRYQRSAFLDHNV---DMDELLASIHQTQNEKELFSLLSTYKDRQLSI 122
Query: 155 ENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMV 214
+ +L+ WQ+S +W+ + + YNV ++++ +QF + L +EM
Sbjct: 123 RFMVSLLSRENDWQRSLALLDWVHEEAKYTPSVFAYNVVLRNVLRAKQFDIAHGLFDEMR 182
Query: 215 SNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVE 274
+ D TYST+IT + +FD A+ W ++M + + D V YS ++++ +
Sbjct: 183 QRALAPDRYTYSTLITSFGKEGMFDSALSWLQKMEQDRVSGDLVLYSNLIELSRRLCDYS 242
Query: 275 EVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLL 334
+ +S++ R SG PD +A++ + ++G++ + R +++EM GV PN V Y+TLL
Sbjct: 243 KAISIFSRLKRSGITPDLVAYNSMINVYGKAKLFREARLLIKEMNEAGVLPNTVSYSTLL 302
Query: 335 EAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWP 394
+ K A S+F EM E D T +I +YG+ K+A L+ +R+
Sbjct: 303 SVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSLRKMDIE 362
Query: 395 MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIE 454
+ + YNT+L + + L EA LF M+ D + + +Y M+ IYG + A
Sbjct: 363 PNVVSYNTILRVYGEAELFGEAIHLFRLMQRKD-IEQNVVTYNTMIKIYGKTMEHEKATN 421
Query: 455 LFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
L +EM G+ N + + +I GKA ++D +F GV+ D L ++
Sbjct: 422 LVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMI 477
Score = 122 bits (305), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 93/407 (22%), Positives = 188/407 (46%), Gaps = 10/407 (2%)
Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
+ K+ F+ +K + P + + YN + + F+ L EM + + ++YS
Sbjct: 241 YSKAISIFSRLKRSGITP-DLVAYNSMINVYGKAKLFREARLLIKEMNEAGVLPNTVSYS 299
Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
T+++ + F EA+ F M + D T + ++DVY + V+E L+
Sbjct: 300 TLLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSLRKM 359
Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
+P+ ++++ + +++GE+ + ++ + M+ ++ N+V YNT+++ GK + A
Sbjct: 360 DIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKA 419
Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
+L EM G+ P+ T + +I I+GKA A L++++R + +D +LY T++
Sbjct: 420 TNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVA 479
Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466
+GL+ A+RL ++KL PDN + I G + A +F + E G
Sbjct: 480 YERVGLMGHAKRLLHELKL-----PDNIPRETAITILAKAGRTEEATWVFRQAFESGEVK 534
Query: 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
++ C+I + +R +++ VF G PD + +L+ E V
Sbjct: 535 DISVFGCMINLYSRNQRYVNVIEVFEKMRTAGYFPDSNVIAMVLNAYGKQREFEKADTVY 594
Query: 527 TCLQQAN---PKLVAFLNL-IEDNSTGFENIKEEFRNVIKDTEVDAR 569
+Q+ P V F L + + FE ++ F+ + D V+++
Sbjct: 595 REMQEEGCVFPDEVHFQMLSLYSSKKDFEMVESLFQRLESDPNVNSK 641
Score = 121 bits (304), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/290 (25%), Positives = 136/290 (46%), Gaps = 1/290 (0%)
Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
Y+ ++ R FD A F+ M + L PD TYS ++ + K G + LS ++
Sbjct: 156 FAYNVVLRNVLRAKQFDIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFDSALSWLQK 215
Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
D + +S L ++ DY + +K G+ P+LV YN+++ GKA
Sbjct: 216 MEQDRVSGDLVLYSNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINVYGKAKL 275
Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
AR L EM E+G+ P+ + + L+ +Y + +AL ++ M+E +D N
Sbjct: 276 FREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNI 335
Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
++++ + +V+EA+RLF ++ D +P+ SY +L +YG AI LF M
Sbjct: 336 MIDVYGQLDMVKEADRLFWSLRKMD-IEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRK 394
Query: 463 GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSV 512
+ NV+ +I+ GK + + RG++P+ ++S+
Sbjct: 395 DIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISI 444
Score = 96.3 bits (238), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 74/318 (23%), Positives = 147/318 (46%), Gaps = 35/318 (11%)
Query: 217 EIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV 276
+IE + ++Y+TI+ LF EAI F M + + + VTY+ ++ +Y K+ + E+
Sbjct: 360 DIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKA 419
Query: 277 LSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA 336
+L + + G +P+ I +S + ++G++G D + Q+++S GV+ + V+Y T++ A
Sbjct: 420 TNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVA 479
Query: 337 MGKAGKPGLARSLFDEM-------------------------------VESGLTPDEKTL 365
+ G G A+ L E+ ESG D
Sbjct: 480 YERVGLMGHAKRLLHELKLPDNIPRETAITILAKAGRTEEATWVFRQAFESGEVKDISVF 539
Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
+I +Y + + + +E++E+MR + D + +LN E+A+ ++ +M+
Sbjct: 540 GCMINLYSRNQRYVNVIEVFEKMRTAGYFPDSNVIAMVLNAYGKQREFEKADTVYREMQE 599
Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL-GKARRI 484
PD + ML++Y S + + LF+ + E +N ++ L +A ++
Sbjct: 600 EGCVFPDEVHFQ-MLSLYSSKKDFEMVESLFQRL-ESDPNVNSKELHLVVAALYERADKL 657
Query: 485 DDLVRVFGVSIDRGV-KP 501
+D RV +RG+ KP
Sbjct: 658 NDASRVMNRMRERGILKP 675
Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/306 (21%), Positives = 136/306 (44%), Gaps = 15/306 (4%)
Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
+A+ R ++ + V +L ++ +E+ SL S +K ++ +
Sbjct: 72 QALRKHRRYQRSAFLDHNVDMDELLASIHQTQNEKELFSL-----LSTYKDRQLSIRFMV 126
Query: 300 KMFGESGDYDG----IRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVE 355
+ D+ + +V +E K P++ YN +L + +A + +A LFDEM +
Sbjct: 127 SLLSRENDWQRSLALLDWVHEEAK---YTPSVFAYNVVLRNVLRAKQFDIAHGLFDEMRQ 183
Query: 356 SGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEE 415
L PD T + LI +GK AL ++M +++ D +LY+ L+ + + +
Sbjct: 184 RALAPDRYTYSTLITSFGKEGMFDSALSWLQKMEQDRVSGDLVLYSNLIELSRRLCDYSK 243
Query: 416 AERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLI 475
A +F +K S PD +Y +M+N+YG A L +EM+E GV N + + L+
Sbjct: 244 AISIFSRLKRSG-ITPDLVAYNSMINVYGKAKLFREARLLIKEMNEAGVLPNTVSYSTLL 302
Query: 476 QCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN-- 533
+ + + + VF + D C ++ V + ++ ++ L++ +
Sbjct: 303 SVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSLRKMDIE 362
Query: 534 PKLVAF 539
P +V++
Sbjct: 363 PNVVSY 368
Score = 63.9 bits (154), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/253 (22%), Positives = 105/253 (41%), Gaps = 33/253 (13%)
Query: 142 LRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGR 201
LR + P+ + L + + + ++ F ++ +++ + YN +K
Sbjct: 356 LRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDI-EQNVVTYNTMIKIYGKTM 414
Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS 261
+ + L EM S IE + ITYSTII+ + D A F+++ +G+ D+V Y
Sbjct: 415 EHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQ 474
Query: 262 AILDVY-------------------------------AKSGKVEEVLSLYERGVASGWKP 290
++ Y AK+G+ EE ++ + SG
Sbjct: 475 TMIVAYERVGLMGHAKRLLHELKLPDNIPRETAITILAKAGRTEEATWVFRQAFESGEVK 534
Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
D F + ++ + Y + V ++M++ G P+ V +L A GK + A +++
Sbjct: 535 DISVFGCMINLYSRNQRYVNVIEVFEKMRTAGYFPDSNVIAMVLNAYGKQREFEKADTVY 594
Query: 351 DEMVESG-LTPDE 362
EM E G + PDE
Sbjct: 595 REMQEEGCVFPDE 607
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 89/317 (28%), Positives = 159/317 (50%), Gaps = 2/317 (0%)
Query: 188 IFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
I YNV + + G + I L +M S+ I D TY+T+ITC KR +L EA + FE
Sbjct: 244 ITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFE 303
Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
M G D+VTY+A+LDVY KS + +E + + V +G+ P + ++ L + G
Sbjct: 304 EMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDG 363
Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
D + +M G +P++ Y TLL +AGK A S+F+EM +G P+ T
Sbjct: 364 MLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFN 423
Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
A IK+YG + +++++ + D + +NTLL + G+ E +F++MK +
Sbjct: 424 AFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRA 483
Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
+ P+ ++ +++ Y G+ + A+ ++ M + GV ++ ++ L + +
Sbjct: 484 GFV-PERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQ 542
Query: 487 LVRVFGVSIDRGVKPDD 503
+V D KP++
Sbjct: 543 SEKVLAEMEDGRCKPNE 559
Score = 139 bits (351), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 97/376 (25%), Positives = 184/376 (48%), Gaps = 9/376 (2%)
Query: 194 MKSLRFGRQFQLIEQLANEMVSN---EIELDNITYSTIITCAKRCNLFDEAIEWFERMYK 250
+K L F ++F L + + + + LDN + II+ + A F + +
Sbjct: 142 LKGLGFHKKFDLALRAFDWFMKQKDYQSMLDNSVVAIIISMLGKEGRVSSAANMFNGLQE 201
Query: 251 TGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD-YD 309
G D +Y++++ +A SG+ E ++++++ G KP I ++V+ +FG+ G ++
Sbjct: 202 DGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWN 261
Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
I ++++MKS G+ P+ YNTL+ + A +F+EM +G + D+ T AL+
Sbjct: 262 KITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALL 321
Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
+YGK+ K+A+++ M N + + YN+L++ A G+++EA L M
Sbjct: 322 DVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMA-EKGT 380
Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
KPD ++YT +L+ + G V++A+ +FEEM G N+ I+ G + ++++
Sbjct: 381 KPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMK 440
Query: 490 VFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAFLNLIEDNS 547
+F G+ PD LL+V +V V +++A P+ F LI S
Sbjct: 441 IFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYS 500
Query: 548 --TGFENIKEEFRNVI 561
FE +R ++
Sbjct: 501 RCGSFEQAMTVYRRML 516
Score = 111 bits (277), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 93/444 (20%), Positives = 176/444 (39%), Gaps = 75/444 (16%)
Query: 183 FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
F + + YN + + + ++ NEMV N +TY+++I+ R + DEA+
Sbjct: 310 FSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAM 369
Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
E +M + G PD TY+ +L + ++GKVE +S++E +G KP+ F+ KM+
Sbjct: 370 ELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMY 429
Query: 303 GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM--------- 353
G G + + + E+ G+ P++V +NTLL G+ G +F EM
Sbjct: 430 GNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPER 489
Query: 354 --------------------------VESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
+++G+TPD T
Sbjct: 490 ETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLST----------------------- 526
Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
YNT+L A G+ E++E++ +M+ CKP+ +Y ++L+ Y +G
Sbjct: 527 ------------YNTVLAALARGGMWEQSEKVLAEME-DGRCKPNELTYCSLLHAYANGK 573
Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCG 507
+ L EE+ + + L+ K + + R F +RG PD
Sbjct: 574 EIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLN 633
Query: 508 CLLSVVSLCETSEDVGKVITCLQQAN--PKLVAFLNL--IEDNSTGFENIKEEFRNVIKD 563
++S+ + V+ +++ P + + +L + S F +E R ++
Sbjct: 634 SMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAK 693
Query: 564 TEVDARRPFCNCLIDICRNRNLNE 587
+ + CRN + +
Sbjct: 694 GIKPDIISYNTVIYAYCRNTRMRD 717
Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 130/285 (45%), Gaps = 13/285 (4%)
Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG---KVEEVLSLY 280
T++T+I+ RC F++A+ + RM G+ PD TY+ +L A+ G + E+VL+
Sbjct: 491 TFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEM 550
Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
E G KP+ + + L + + + + +E+ S ++P V+ TL+ K
Sbjct: 551 EDGRC---KPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKC 607
Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
A F E+ E G +PD TL +++ IYG+ + A + + M+E + Y
Sbjct: 608 DLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATY 667
Query: 401 NTLLNM---CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE 457
N+L+ M AD G EE R L+ KPD SY ++ Y + +A +F
Sbjct: 668 NSLMYMHSRSADFGKSEEILREI----LAKGIKPDIISYNTVIYAYCRNTRMRDASRIFS 723
Query: 458 EMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
EM G+ +V+ I ++ + V I G +P+
Sbjct: 724 EMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPN 768
Score = 89.7 bits (221), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 64/283 (22%), Positives = 126/283 (44%), Gaps = 1/283 (0%)
Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
P T L L W++S ++ P E + Y + + G++ L+
Sbjct: 522 PDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNE-LTYCSLLHAYANGKEIGLMHS 580
Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
LA E+ S IE + T++ +C+L EA F + + G PD T ++++ +Y
Sbjct: 581 LAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYG 640
Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
+ V + + + G+ P ++ L M S D+ +L+E+ + G++P+++
Sbjct: 641 RRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDII 700
Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
YNT++ A + + A +F EM SG+ PD T I Y ++A+ + M
Sbjct: 701 SYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYM 760
Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
++ + YN++++ + +EA+ ED++ D P
Sbjct: 761 IKHGCRPNQNTYNSIVDGYCKLNRKDEAKLFVEDLRNLDPHAP 803
>sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400,
chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2
SV=1
Length = 918
Score = 144 bits (363), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 129/558 (23%), Positives = 245/558 (43%), Gaps = 37/558 (6%)
Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
FF+ ++ + P + I +N + G ++ L +EM + IE D +Y+T++
Sbjct: 326 FFDEMQRNGVQP-DRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAI 384
Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
+ D A E +M +MP+ V+YS ++D +AK+G+ +E L+L+ G D
Sbjct: 385 CKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDR 444
Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
++++ L ++ + G + +L+EM S+G++ ++V YN LL GK GK + +F E
Sbjct: 445 VSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTE 504
Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
M + P+ T + LI Y K K+A+E++ + D +LY+ L++ GL
Sbjct: 505 MKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGL 564
Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD------NAIELFEEMSELGVAI 466
V A L ++M + P+ +Y ++++ +G +D N L S L
Sbjct: 565 VGSAVSLIDEMT-KEGISPNVVTYNSIIDAFGRSATMDRSADYSNGGSLPFSSSALSALT 623
Query: 467 NVMGCTCLIQCLGK----------------ARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
G +IQ G+ + + ++ VF +KP+ +L
Sbjct: 624 ETEG-NRVIQLFGQLTTESNNRTTKDCEEGMQELSCILEVFRKMHQLEIKPNVVTFSAIL 682
Query: 511 SVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENI---KEEFRNVIKDTEVD 567
+ S C + ED ++ L+ + K+ ++ + EN+ + + + + +
Sbjct: 683 NACSRCNSFEDASMLLEELRLFDNKVYGVVHGLLMGQR--ENVWLQAQSLFDKVNEMDGS 740
Query: 568 ARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQT 627
F N L D+ + +R EL+ L G + + LD+ +S GAA+
Sbjct: 741 TASAFYNALTDMLWHFG-QKRGAELV---ALEGRSRQVWENVWSDSCLDLHLMSSGAARA 796
Query: 628 ALEEWMWTLAKIVLREEVLPQLFLAETGTGTHKFSQG---LATAFASHVNKLAAPFRQSE 684
+ W+ + IV LP++ TG G H G L A + + APF S+
Sbjct: 797 MVHAWLLNIRSIVYEGHELPKVLSILTGWGKHSKVVGDGALRRAVEVLLRGMDAPFHLSK 856
Query: 685 GKAGCFVATREDLVSWVQ 702
G F ++ + +W++
Sbjct: 857 CNMGRFTSSGSVVATWLR 874
Score = 127 bits (318), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 107/387 (27%), Positives = 177/387 (45%), Gaps = 15/387 (3%)
Query: 207 EQLANEMVSNEIEL---DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVT--YS 261
E + M+S E +L D+ TY II N D+A+ ++E K +E S
Sbjct: 180 EMFHSLMLSFESKLCGSDDCTY--IIRELGNRNECDKAVGFYEFAVKRERRKNEQGKLAS 237
Query: 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
A++ + GKV ++E A G+ AFS L +G SG ++ V MK
Sbjct: 238 AMISTLGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEY 297
Query: 322 GVQPNLVVYNTLLEAMGKAGKP-GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380
G++PNLV YN +++A GK G FDEM +G+ PD T +L+ + + +
Sbjct: 298 GLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEA 357
Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
A L++ M + D YNTLL+ G ++ A + M + P+ SY+ ++
Sbjct: 358 ARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKR-IMPNVVSYSTVI 416
Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
+ + G D A+ LF EM LG+A++ + L+ K R ++ + + G+K
Sbjct: 417 DGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIK 476
Query: 501 PDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAFLNLIEDNSTG--FENIKEE 556
D LL ++V KV T +++ + P L+ + LI+ S G ++ E
Sbjct: 477 KDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEI 536
Query: 557 FRNVIKDTEVDARRPFCNCLID-ICRN 582
FR K + A + LID +C+N
Sbjct: 537 FRE-FKSAGLRADVVLYSALIDALCKN 562
Score = 125 bits (315), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 80/313 (25%), Positives = 156/313 (49%), Gaps = 3/313 (0%)
Query: 174 FNWIKSQNLFPMETIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
FN +K L P + YN + + + G +F+ + + +EM N ++ D IT+++++
Sbjct: 291 FNSMKEYGLRP-NLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVC 349
Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
R L++ A F+ M + D +Y+ +LD K G+++ + + P+
Sbjct: 350 SRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNV 409
Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
+++S + F ++G +D + EM+ LG+ + V YNTLL K G+ A + E
Sbjct: 410 VSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILRE 469
Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
M G+ D T AL+ YGK + +++ M+ + + Y+TL++ + GL
Sbjct: 470 MASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGL 529
Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
+EA +F + K S + D Y+A+++ G V +A+ L +EM++ G++ NV+
Sbjct: 530 YKEAMEIFREFK-SAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYN 588
Query: 473 CLIQCLGKARRID 485
+I G++ +D
Sbjct: 589 SIIDAFGRSATMD 601
>sp|O64624|PP163_ARATH Pentatricopeptide repeat-containing protein At2g18940
OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1
Length = 822
Score = 139 bits (351), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 93/340 (27%), Positives = 166/340 (48%), Gaps = 12/340 (3%)
Query: 142 LRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSL-RFG 200
+RA T I H +R ++K+ F +K P + YNV + + G
Sbjct: 210 VRAYTTILHAYSRTGK---------YEKAIDLFERMKEMGPSPT-LVTYNVILDVFGKMG 259
Query: 201 RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTY 260
R ++ I + +EM S ++ D T ST+++ R L EA E+F + G P VTY
Sbjct: 260 RSWRKILGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTY 319
Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
+A+L V+ K+G E LS+ + + D + ++ L + +G V++ M
Sbjct: 320 NALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTK 379
Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380
GV PN + Y T+++A GKAGK A LF M E+G P+ T A++ + GK + +
Sbjct: 380 KGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNE 439
Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
+++ M+ N + +NT+L +C + G+ + R+F +MK + +PD ++ ++
Sbjct: 440 MIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGF-EPDRDTFNTLI 498
Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK 480
+ YG G+ +A +++ EM+ G V L+ L +
Sbjct: 499 SAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALAR 538
Score = 134 bits (337), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 101/378 (26%), Positives = 174/378 (46%), Gaps = 7/378 (1%)
Query: 161 LNSLKFWQKSYFFFNWI---KSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNE 217
L+ W+++ F F W+ + ++ + ++ L Q+ + +L +++ E
Sbjct: 146 LDDSGHWERAVFLFEWLVLSSNSGALKLDHQVIEIFVRILGRESQYSVAAKLLDKIPLQE 205
Query: 218 IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKV-EEV 276
LD Y+TI+ R +++AI+ FERM + G P VTY+ ILDV+ K G+ ++
Sbjct: 206 YLLDVRAYTTILHAYSRTGKYEKAIDLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKI 265
Query: 277 LSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA 336
L + + + G K D S + G + E+KS G +P V YN LL+
Sbjct: 266 LGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQV 325
Query: 337 MGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMD 396
GKAG A S+ EM E+ D T L+ Y +A ++K+A + E M + +
Sbjct: 326 FGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPN 385
Query: 397 FILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELF 456
I Y T+++ G +EA +LF MK + C P+ +Y A+L++ G + I++
Sbjct: 386 AITYTTVIDAYGKAGKEDEALKLFYSMKEAG-CVPNTCTYNAVLSLLGKKSRSNEMIKML 444
Query: 457 EEMSELGVAINVMGCTCLIQCLGKARRIDDLV-RVFGVSIDRGVKPDDRLCGCLLSVVSL 515
+M G + N ++ G + +D V RVF G +PD L+S
Sbjct: 445 CDMKSNGCSPNRATWNTMLALCGN-KGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGR 503
Query: 516 CETSEDVGKVITCLQQAN 533
C + D K+ + +A
Sbjct: 504 CGSEVDASKMYGEMTRAG 521
Score = 79.3 bits (194), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 64/330 (19%), Positives = 142/330 (43%), Gaps = 4/330 (1%)
Query: 173 FFNWIKSQNLFPMETIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITC 231
F +K P T YN + L + R ++I+ L +M SN + T++T++
Sbjct: 408 LFYSMKEAGCVP-NTCTYNAVLSLLGKKSRSNEMIKMLC-DMKSNGCSPNRATWNTMLAL 465
Query: 232 AKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291
+ F M G PD T++ ++ Y + G + +Y +G+
Sbjct: 466 CGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNAC 525
Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
++ L GD+ V+ +MKS G +P Y+ +L+ K G + +
Sbjct: 526 VTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIEN 585
Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411
+ E + P L L+ K R + + +++ + D +++N++L++
Sbjct: 586 RIKEGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNN 645
Query: 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC 471
+ ++AE + E ++ D PD +Y +++++Y G A E+ + + + + +++
Sbjct: 646 MYDQAEGILESIR-EDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSY 704
Query: 472 TCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
+I+ + + + VR+ +RG++P
Sbjct: 705 NTVIKGFCRRGLMQEAVRMLSEMTERGIRP 734
Score = 75.9 bits (185), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 104/218 (47%), Gaps = 7/218 (3%)
Query: 175 NWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKR 234
N IK +FP + + + + + R E+ + + D + ++++++ R
Sbjct: 585 NRIKEGQIFPSWMLLRTLLLANFKC-RALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTR 643
Query: 235 CNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG---KVEEVLSLYERGVASGWKPD 291
N++D+A E + + GL PD VTY++++D+Y + G K EE+L E+ S KPD
Sbjct: 644 NNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEK---SQLKPD 700
Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
++++ + K F G +L EM G++P + YNT + G + +
Sbjct: 701 LVSYNTVIKGFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMFAEIEDVIE 760
Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMR 389
M ++ P+E T ++ Y +A +A++ +++
Sbjct: 761 CMAKNDCRPNELTFKMVVDGYCRAGKYSEAMDFVSKIK 798
Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/293 (19%), Positives = 120/293 (40%), Gaps = 37/293 (12%)
Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
W+ + +KS+ P ET Y++ ++ G + IE++ N + +I +
Sbjct: 542 WRSGENVISDMKSKGFKPTETS-YSLMLQCYAKGGNYLGIERIENRIKEGQIFPSWMLLR 600
Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
T++ +C + F K G PD V ++++L ++ ++ ++ + E
Sbjct: 601 TLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIRED 660
Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
G PD + ++ L M+ G+ +L+ ++ ++P+LV YNT+++ + G A
Sbjct: 661 GLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQEA 720
Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
+ EM E G+ P YNT ++
Sbjct: 721 VRMLSEMTERGIRP-----------------------------------CIFTYNTFVSG 745
Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
+G+ E E + E M +D C+P+ ++ +++ Y G A++ ++
Sbjct: 746 YTAMGMFAEIEDVIECMAKND-CRPNELTFKMVVDGYCRAGKYSEAMDFVSKI 797
>sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150
OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1
Length = 761
Score = 137 bits (346), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 91/348 (26%), Positives = 167/348 (47%), Gaps = 16/348 (4%)
Query: 170 SYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELD--NITYST 227
++ FF W ++N F Y + L R + + EMV ++ + D ++ +ST
Sbjct: 125 AFKFFKWSMTRNGFKHSVESYCIVAHILFCARMYYDANSVLKEMVLSKADCDVFDVLWST 184
Query: 228 IITCAKRCNLFD-------------EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVE 274
C +FD EAI+ F +M + + P + + +L +AK GK +
Sbjct: 185 RNVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTD 244
Query: 275 EVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLL 334
+V ++ + +G +P ++++ + GD + R + +EMK G+ P+ V YN+++
Sbjct: 245 DVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMI 304
Query: 335 EAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWP 394
+ GK G+ F+EM + PD T ALI + K LE + M+ N
Sbjct: 305 DGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLK 364
Query: 395 MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIE 454
+ + Y+TL++ G++++A + + DM+ P+ Y+YT++++ GN+ +A
Sbjct: 365 PNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLV-PNEYTYTSLIDANCKIGNLSDAFR 423
Query: 455 LFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
L EM ++GV NV+ T LI L A R+ + +FG GV P+
Sbjct: 424 LGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPN 471
Score = 111 bits (278), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/341 (24%), Positives = 160/341 (46%), Gaps = 5/341 (1%)
Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
Q++ F+ ++ L P E + ++ + + G +L NEM+ +E + +TY+
Sbjct: 384 QQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAF-RLGNEMLQVGVEWNVVTYTA 442
Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
+I EA E F +M G++P+ +Y+A++ + K+ ++ L L G
Sbjct: 443 LIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRG 502
Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
KPD + + + + V+ EMK G++ N ++Y TL++A K+G P
Sbjct: 503 IKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGL 562
Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN-KWPMDFILYNTLLN- 405
L DEM E + T LI K + A++ + R+ + + ++ +++
Sbjct: 563 HLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDG 622
Query: 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
+C D VE A LFE M + PD +YT++++ GNV A+ L ++M+E+G+
Sbjct: 623 LCKD-NQVEAATTLFEQM-VQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMK 680
Query: 466 INVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLC 506
++++ T L+ L ++ I G+ PD+ LC
Sbjct: 681 LDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLC 721
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/272 (23%), Positives = 117/272 (43%), Gaps = 12/272 (4%)
Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
YN + + +L NE+ I+ D + Y T I + A M
Sbjct: 475 YNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMK 534
Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL------GKMFG 303
+ G+ + + Y+ ++D Y KSG E L L + + + F VL K+
Sbjct: 535 ECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVS 594
Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
++ DY + G+Q N ++ +++ + K + A +LF++MV+ GL PD
Sbjct: 595 KAVDYFN-----RISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRT 649
Query: 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
T+L+ K +AL L ++M E +D + Y +L+ + +++A E+M
Sbjct: 650 AYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEM 709
Query: 424 KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIEL 455
+ + PD ++L + G +D A+EL
Sbjct: 710 -IGEGIHPDEVLCISVLKKHYELGCIDEAVEL 740
>sp|O04491|PPR26_ARATH Putative pentatricopeptide repeat-containing protein At1g09680
OS=Arabidopsis thaliana GN=At1g09680 PE=3 SV=1
Length = 607
Score = 137 bits (346), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 87/322 (27%), Positives = 160/322 (49%), Gaps = 3/322 (0%)
Query: 183 FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
FP+ +N+ M +++ +E+ ++ ++++T+I + DE
Sbjct: 236 FPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGF 295
Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
+M K+ PD TYSA+++ K K++ L++ G P+ + F+ L
Sbjct: 296 RLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGH 355
Query: 303 GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
+G+ D ++ Q+M S G+QP++V+YNTL+ K G AR++ D M+ GL PD+
Sbjct: 356 SRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDK 415
Query: 363 KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL-NMCADIGLVEEAERLFE 421
T T LI + + + ALE+ + M +N +D + ++ L+ MC + G V +AER
Sbjct: 416 ITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKE-GRVIDAERALR 474
Query: 422 DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
+M L KPD+ +YT M++ + G+ +L +EM G +V+ L+ L K
Sbjct: 475 EM-LRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKL 533
Query: 482 RRIDDLVRVFGVSIDRGVKPDD 503
++ + + ++ GV PDD
Sbjct: 534 GQMKNADMLLDAMLNIGVVPDD 555
Score = 98.2 bits (243), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 99/402 (24%), Positives = 165/402 (41%), Gaps = 68/402 (16%)
Query: 162 NSLKFWQKSYF-FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIEL 220
N L Q+S F FF +I SQ F Y V + L F + L +VS + +
Sbjct: 92 NPLSLPQRSIFAFFKFISSQPGFRFTVETYFVLARFLAVHEMFTEAQSLIELVVSRKGK- 150
Query: 221 DNITYSTIITCAKR-----CNLFDEAIEWFERMYKTGLMPDEVTY--------------- 260
N S I+ + C +A+ G +PD +
Sbjct: 151 -NSASSVFISLVEMRVTPMCGFLVDALMI--TYTDLGFIPDAIQCFRLSRKHRFDVPIRG 207
Query: 261 -SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMK 319
+LD K + Y + +G+ + F++L F + G+ + V E+
Sbjct: 208 CGNLLDRMMKLNPTGTIWGFYMEILDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEIT 267
Query: 320 SLGVQPNLVVYNTLLEAMGKAG-----------------KPGL----------------- 345
+QP +V +NTL+ K G +P +
Sbjct: 268 KRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMD 327
Query: 346 -ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL--ELWERMRENKWPMDFILYNT 402
A LFDEM + GL P++ T L I+G +R + L E +++M D +LYNT
Sbjct: 328 GAHGLFDEMCKRGLIPNDVIFTTL--IHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNT 385
Query: 403 LLN-MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461
L+N C + LV A R D + +PD +YT +++ + GG+V+ A+E+ +EM +
Sbjct: 386 LVNGFCKNGDLV--AARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQ 443
Query: 462 LGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
G+ ++ +G + L+ + K R+ D R + G+KPDD
Sbjct: 444 NGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDD 485
Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 97/203 (47%), Gaps = 3/203 (1%)
Query: 179 SQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLF 238
S+ L P + + YN + + + M+ + D ITY+T+I R
Sbjct: 373 SKGLQP-DIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDV 431
Query: 239 DEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
+ A+E + M + G+ D V +SA++ K G+V + + +G KPD + ++++
Sbjct: 432 ETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMM 491
Query: 299 GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
F + GD +L+EM+S G P++V YN LL + K G+ A L D M+ G+
Sbjct: 492 MDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAMLNIGV 551
Query: 359 TPDEKTLTALIKIYGKARWAKDA 381
PD+ T L++ G R A +
Sbjct: 552 VPDDITYNTLLE--GHHRHANSS 572
>sp|Q9ZU27|PPR76_ARATH Pentatricopeptide repeat-containing protein At1g51965,
mitochondrial OS=Arabidopsis thaliana GN=At1g51965 PE=2
SV=1
Length = 650
Score = 137 bits (344), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 87/317 (27%), Positives = 166/317 (52%), Gaps = 12/317 (3%)
Query: 190 YNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERM 248
Y + ++++ R G+ + + L NEM++ + L+ + Y+T++ + + D+AI+ F RM
Sbjct: 273 YTIMIRTMGRIGKCDEAV-GLFNEMITEGLTLNVVGYNTLMQVLAKGKMVDKAIQVFSRM 331
Query: 249 YKTGLMPDEVTYSAILDVYAKSG---KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
+TG P+E TYS +L++ G +++ V+ + +R + G +S L + +
Sbjct: 332 VETGCRPNEYTYSLLLNLLVAEGQLVRLDGVVEISKRYMTQG------IYSYLVRTLSKL 385
Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
G + +M S V+ Y ++LE++ AGK A + ++ E G+ D
Sbjct: 386 GHVSEAHRLFCDMWSFPVKGERDSYMSMLESLCGAGKTIEAIEMLSKIHEKGVVTDTMMY 445
Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
+ GK + +L+E+M+++ D YN L+ +G V+EA +FE+++
Sbjct: 446 NTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAINIFEELER 505
Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
SD CKPD SY +++N G G+VD A F+EM E G+ +V+ + L++C GK R++
Sbjct: 506 SD-CKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTERVE 564
Query: 486 DLVRVFGVSIDRGVKPD 502
+F + +G +P+
Sbjct: 565 MAYSLFEEMLVKGCQPN 581
Score = 107 bits (268), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 108/204 (52%), Gaps = 1/204 (0%)
Query: 200 GRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVT 259
G+ + IE L+ ++ + D + Y+T+ + + + FE+M K G PD T
Sbjct: 421 GKTIEAIEMLS-KIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFT 479
Query: 260 YSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMK 319
Y+ ++ + + G+V+E ++++E S KPD I+++ L G++GD D +EM+
Sbjct: 480 YNILIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQ 539
Query: 320 SLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAK 379
G+ P++V Y+TL+E GK + +A SLF+EM+ G P+ T L+ K
Sbjct: 540 EKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKNGRTA 599
Query: 380 DALELWERMRENKWPMDFILYNTL 403
+A++L+ +M++ D I Y L
Sbjct: 600 EAVDLYSKMKQQGLTPDSITYTVL 623
Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 101/195 (51%), Gaps = 4/195 (2%)
Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
+T+ YN +L +Q I L +M + D TY+ +I R DEAI F
Sbjct: 441 DTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAINIF 500
Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
E + ++ PD ++Y+++++ K+G V+E ++ G PD + +S L + FG++
Sbjct: 501 EELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKT 560
Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
+ + +EM G QPN+V YN LL+ + K G+ A L+ +M + GLTPD T
Sbjct: 561 ERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKNGRTAEAVDLYSKMKQQGLTPDSITY 620
Query: 366 TALIKI----YGKAR 376
T L ++ +GK+R
Sbjct: 621 TVLERLQSVSHGKSR 635
Score = 103 bits (257), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 99/200 (49%), Gaps = 1/200 (0%)
Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
EAIE ++++ G++ D + Y+ + K ++ + L+E+ G PD +++L
Sbjct: 425 EAIEMLSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILI 484
Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
FG G+ D + +E++ +P+++ YN+L+ +GK G A F EM E GL
Sbjct: 485 ASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLN 544
Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419
PD T + L++ +GK + A L+E M + + YN LL+ G EA L
Sbjct: 545 PDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKNGRTAEAVDL 604
Query: 420 FEDMKLSDYCKPDNYSYTAM 439
+ MK PD+ +YT +
Sbjct: 605 YSKMKQQG-LTPDSITYTVL 623
Score = 94.4 bits (233), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 74/289 (25%), Positives = 132/289 (45%), Gaps = 13/289 (4%)
Query: 217 EIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV 276
++++++ TY ++ R + +A + + + + G D Y+ +LD AK E+
Sbjct: 198 DLKMNSFTYKCLLQAYLRSRDYSKAFDVYCEIRRGGHKLDIFAYNMLLDALAKD---EKA 254
Query: 277 LSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA 336
++E + D ++++ + G G D + EM + G+ N+V YNTL++
Sbjct: 255 CQVFEDMKKRHCRRDEYTYTIMIRTMGRIGKCDEAVGLFNEMITEGLTLNVVGYNTLMQV 314
Query: 337 MGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIY---GKARWAKDALELWERMRENKW 393
+ K A +F MVE+G P+E T + L+ + G+ +E+ +R
Sbjct: 315 LAKGKMVDKAIQVFSRMVETGCRPNEYTYSLLLNLLVAEGQLVRLDGVVEISKRY----- 369
Query: 394 PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAI 453
M +Y+ L+ + +G V EA RLF DM S K + SY +ML G AI
Sbjct: 370 -MTQGIYSYLVRTLSKLGHVSEAHRLFCDM-WSFPVKGERDSYMSMLESLCGAGKTIEAI 427
Query: 454 ELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
E+ ++ E GV + M + LGK ++I + +F G PD
Sbjct: 428 EMLSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPD 476
Score = 93.2 bits (230), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 101/206 (49%), Gaps = 7/206 (3%)
Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
+D +R +L M V N+ N L+ G + L + L + T
Sbjct: 152 FDRVRSILDSMVKSNVHGNISTVNILIGFFGNTEDLQMCLRLVKKW---DLKMNSFTYKC 208
Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
L++ Y ++R A +++ +R +D YN LL+ A E+A ++FEDMK
Sbjct: 209 LLQAYLRSRDYSKAFDVYCEIRRGGHKLDIFAYNMLLDALAKD---EKACQVFEDMK-KR 264
Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
+C+ D Y+YT M+ G G D A+ LF EM G+ +NV+G L+Q L K + +D
Sbjct: 265 HCRRDEYTYTIMIRTMGRIGKCDEAVGLFNEMITEGLTLNVVGYNTLMQVLAKGKMVDKA 324
Query: 488 VRVFGVSIDRGVKPDDRLCGCLLSVV 513
++VF ++ G +P++ LL+++
Sbjct: 325 IQVFSRMVETGCRPNEYTYSLLLNLL 350
Score = 90.5 bits (223), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 88/373 (23%), Positives = 162/373 (43%), Gaps = 25/373 (6%)
Query: 111 KRSTYSYNPRVRDLKLFARKLNDCDNTEEAFLRAITE-IPHQPTRENALL-ILNSLKFWQ 168
+R Y+Y +R + ++ CD F ITE + N L+ +L K
Sbjct: 267 RRDEYTYTIMIRTMG----RIGKCDEAVGLFNEMITEGLTLNVVGYNTLMQVLAKGKMVD 322
Query: 169 KSYFFFNWIKSQNLFPME---TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITY 225
K+ F+ + P E ++ N+ + + R ++E M Y
Sbjct: 323 KAIQVFSRMVETGCRPNEYTYSLLLNLLVAEGQLVRLDGVVEISKRYMTQG-------IY 375
Query: 226 STIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK----VEEVLSLYE 281
S ++ + EA F M+ + + +Y ++L+ +GK +E + ++E
Sbjct: 376 SYLVRTLSKLGHVSEAHRLFCDMWSFPVKGERDSYMSMLESLCGAGKTIEAIEMLSKIHE 435
Query: 282 RGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG 341
+GV + FS LGK+ S +D + ++MK G P++ YN L+ + G+ G
Sbjct: 436 KGVVTDTMMYNTVFSALGKLKQISHIHD----LFEKMKKDGPSPDIFTYNILIASFGRVG 491
Query: 342 KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYN 401
+ A ++F+E+ S PD + +LI GK +A ++ M+E D + Y+
Sbjct: 492 EVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYS 551
Query: 402 TLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461
TL+ VE A LFE+M L C+P+ +Y +L+ G A++L+ +M +
Sbjct: 552 TLMECFGKTERVEMAYSLFEEM-LVKGCQPNIVTYNILLDCLEKNGRTAEAVDLYSKMKQ 610
Query: 462 LGVAINVMGCTCL 474
G+ + + T L
Sbjct: 611 QGLTPDSITYTVL 623
Score = 60.5 bits (145), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 50/101 (49%)
Query: 212 EMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG 271
EM + D +TYST++ C + + A FE M G P+ VTY+ +LD K+G
Sbjct: 537 EMQEKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKNG 596
Query: 272 KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIR 312
+ E + LY + G PD I ++VL ++ S IR
Sbjct: 597 RTAEAVDLYSKMKQQGLTPDSITYTVLERLQSVSHGKSRIR 637
>sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850,
chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1
Length = 862
Score = 132 bits (333), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 84/323 (26%), Positives = 152/323 (47%), Gaps = 4/323 (1%)
Query: 225 YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
Y+ +I+ R L D+ +E F+ M G+ +Y+A+++ Y ++G+ E L L +R
Sbjct: 144 YTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMK 203
Query: 285 ASGWKPDPIAFSVLGKMFGESG-DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
P + ++ + G D++G+ + EM+ G+QP++V YNTLL A G
Sbjct: 204 NEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLG 263
Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
A +F M + G+ PD T + L++ +GK R + +L M D YN L
Sbjct: 264 DEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVL 323
Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
L A G ++EA +F M+ + C P+ +Y+ +LN++G G D+ +LF EM
Sbjct: 324 LEAYAKSGSIKEAMGVFHQMQAAG-CTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSN 382
Query: 464 VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVG 523
+ LI+ G+ ++V +F ++ ++PD ++ ED
Sbjct: 383 TDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDAR 442
Query: 524 KVITCLQQAN--PKLVAFLNLIE 544
K++ + + P A+ +IE
Sbjct: 443 KILQYMTANDIVPSSKAYTGVIE 465
Score = 131 bits (330), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 89/339 (26%), Positives = 162/339 (47%), Gaps = 4/339 (1%)
Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
++ S + +K++ + P + V R G ++ + L EM I+ D +TY+
Sbjct: 192 YETSLELLDRMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYN 251
Query: 227 TIIT-CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVA 285
T+++ CA R L DEA F M G++PD TYS +++ + K ++E+V L +
Sbjct: 252 TLLSACAIR-GLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMAS 310
Query: 286 SGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGL 345
G PD +++VL + + +SG V +M++ G PN Y+ LL G++G+
Sbjct: 311 GGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDD 370
Query: 346 ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405
R LF EM S PD T LI+++G+ + K+ + L+ M E D Y ++
Sbjct: 371 VRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIF 430
Query: 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
C GL E+A ++ + M +D P + +YT ++ +G + A+ F M E+G
Sbjct: 431 ACGKGGLHEDARKILQYMTANDIV-PSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSN 489
Query: 466 INVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR 504
++ L+ + + + + +D G+ P +R
Sbjct: 490 PSIETFHSLLYSFARGGLVKESEAILSRLVDSGI-PRNR 527
Score = 124 bits (310), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 117/460 (25%), Positives = 207/460 (45%), Gaps = 38/460 (8%)
Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
TYS ++ + +D+ + F M + PD TY+ +++V+ + G +EV++L+
Sbjct: 354 TYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDM 413
Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
V +PD + + G+ G ++ R +LQ M + + P+ Y ++EA G+A
Sbjct: 414 VEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALY 473
Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
A F+ M E G P +T +L+ + + K++ + R+ ++ P + +N
Sbjct: 474 EEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQ 533
Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
+ G EEA + + DM+ S C PD + A+L++Y VD E FEEM
Sbjct: 534 IEAYKQGGKFEEAVKTYVDMEKSR-CDPDERTLEAVLSVYSFARLVDECREQFEEMKASD 592
Query: 464 VAINVMGCTCLIQCL-GKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDV 522
+ ++M C C++ + GK R DD+ + + V ++ G ++ + +D
Sbjct: 593 ILPSIM-CYCMMLAVYGKTERWDDVNELLEEMLSNRVSNIHQVIGQMIK----GDYDDD- 646
Query: 523 GKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRN 582
+N ++V ++ L + NS G + R F N L+D
Sbjct: 647 ---------SNWQIVEYV-LDKLNSEG--------------CGLGIR--FYNALLDALWW 680
Query: 583 RNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAKIVLR 642
ERA +L T GL+P L K WS+DV +S G TAL W+ + ++L+
Sbjct: 681 LGQKERAARVLNEATKRGLFPELFRKNKLVWSVDVHRMSEGGMYTALSVWLNDINDMLLK 740
Query: 643 EEVLPQLFLAETGTGTHKFSQGLATAFASHVNKLAAPFRQ 682
+ LPQL + + G + S + A S + K A F Q
Sbjct: 741 GD-LPQLAVVVSVRGQLEKS---SAARESPIAKAAFSFLQ 776
Score = 95.9 bits (237), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 124/270 (45%), Gaps = 1/270 (0%)
Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
Y+V + ++ + QL EM S+ + D TY+ +I F E + F M
Sbjct: 355 YSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMV 414
Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
+ + PD TY I+ K G E+ + + A+ P A++ + + FG++ Y+
Sbjct: 415 EENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYE 474
Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
M +G P++ +++LL + + G + ++ +V+SG+ + T A I
Sbjct: 475 EALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQI 534
Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
+ Y + ++A++ + M +++ D +L++ + LV+E FE+MK SD
Sbjct: 535 EAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYSFARLVDECREQFEEMKASDIL 594
Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
P Y ML +YG D+ EL EEM
Sbjct: 595 -PSIMCYCMMLAVYGKTERWDDVNELLEEM 623
Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/291 (25%), Positives = 135/291 (46%), Gaps = 8/291 (2%)
Query: 295 FSVLGKMFGESGDYD-GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
F+++ K F GD+ +R + + +PN +Y ++ +G+ G +FDEM
Sbjct: 108 FALVFKEFAGRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEM 167
Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
G++ + TALI YG+ + +LEL +RM+ K + YNT++N CA GL
Sbjct: 168 PSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNEKISPSILTYNTVINACARGGLD 227
Query: 414 EEA-ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
E LF +M+ + +PD +Y +L+ G D A +F M++ G+ ++ +
Sbjct: 228 WEGLLGLFAEMR-HEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYS 286
Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQA 532
L++ GK RR++ + + G G PD LL + + ++ V +Q A
Sbjct: 287 HLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAA 346
Query: 533 ----NPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDI 579
N + L + S ++++++ F +K + D N LI++
Sbjct: 347 GCTPNANTYSVLLNLFGQSGRYDDVRQLFLE-MKSSNTDPDAATYNILIEV 396
Score = 60.5 bits (145), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/255 (22%), Positives = 93/255 (36%), Gaps = 36/255 (14%)
Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
F +KS N P + YN+ ++ G F+ + L ++MV IE D TY II
Sbjct: 374 LFLEMKSSNTDP-DAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFAC 432
Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
+ L ++A + + M ++P Y+ +++ + ++ EE L + G P
Sbjct: 433 GKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSI 492
Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA------ 346
F L F G +L + G+ N +N +EA + GK A
Sbjct: 493 ETFHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTYVD 552
Query: 347 -----------------------------RSLFDEMVESGLTPDEKTLTALIKIYGKARW 377
R F+EM S + P ++ +YGK
Sbjct: 553 MEKSRCDPDERTLEAVLSVYSFARLVDECREQFEEMKASDILPSIMCYCMMLAVYGKTER 612
Query: 378 AKDALELWERMRENK 392
D EL E M N+
Sbjct: 613 WDDVNELLEEMLSNR 627
Score = 59.3 bits (142), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 86/178 (48%), Gaps = 11/178 (6%)
Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
+N +++ + G +F+ + +M + + D T +++ L DE E FE M
Sbjct: 530 FNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYSFARLVDECREQFEEMK 589
Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
+ ++P + Y +L VY K+ + ++V L E +++ + I V+G+M GDYD
Sbjct: 590 ASDILPSIMCYCMMLAVYGKTERWDDVNELLEEMLSN--RVSNI-HQVIGQMI--KGDYD 644
Query: 310 G------IRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD 361
+ YVL ++ S G + YN LL+A+ G+ A + +E + GL P+
Sbjct: 645 DDSNWQIVEYVLDKLNSEGCGLGIRFYNALLDALWWLGQKERAARVLNEATKRGLFPE 702
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 132 bits (332), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 87/339 (25%), Positives = 164/339 (48%), Gaps = 1/339 (0%)
Query: 164 LKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNI 223
L K+ + ++ P + V ++R R E + EM+ +++ +
Sbjct: 147 LSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVF 206
Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
TY+ +I D A+ F++M G +P+ VTY+ ++D Y K K+++ L
Sbjct: 207 TYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSM 266
Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
G +P+ I+++V+ G + +VL EM G + V YNTL++ K G
Sbjct: 267 ALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNF 326
Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
A + EM+ GLTP T T+LI KA A+E ++MR + Y TL
Sbjct: 327 HQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTL 386
Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
++ + G + EA R+ +M + + P +Y A++N + G +++AI + E+M E G
Sbjct: 387 VDGFSQKGYMNEAYRVLREMNDNGF-SPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKG 445
Query: 464 VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
++ +V+ + ++ ++ +D+ +RV +++G+KPD
Sbjct: 446 LSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPD 484
Score = 125 bits (315), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 77/314 (24%), Positives = 153/314 (48%), Gaps = 1/314 (0%)
Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
YN+ ++ F + L ++M + + +TY+T+I + D+ + M
Sbjct: 208 YNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMA 267
Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
GL P+ ++Y+ +++ + G+++EV + G+ D + ++ L K + + G++
Sbjct: 268 LKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFH 327
Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
+ EM G+ P+++ Y +L+ +M KAG A D+M GL P+E+T T L+
Sbjct: 328 QALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLV 387
Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
+ + + +A + M +N + + YN L+N G +E+A + EDMK
Sbjct: 388 DGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMK-EKGL 446
Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
PD SY+ +L+ + +VD A+ + EM E G+ + + + LIQ + RR +
Sbjct: 447 SPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACD 506
Query: 490 VFGVSIDRGVKPDD 503
++ + G+ PD+
Sbjct: 507 LYEEMLRVGLPPDE 520
Score = 124 bits (312), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 90/321 (28%), Positives = 158/321 (49%), Gaps = 5/321 (1%)
Query: 174 FNWIKSQNLFPME--TIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIIT 230
F ++S L +E I YNV + L R GR + + + EM LD +TY+T+I
Sbjct: 260 FKLLRSMALKGLEPNLISYNVVINGLCREGRMKE-VSFVLTEMNRRGYSLDEVTYNTLIK 318
Query: 231 CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
+ F +A+ M + GL P +TY++++ K+G + + ++ G P
Sbjct: 319 GYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCP 378
Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
+ ++ L F + G + VL+EM G P++V YN L+ GK A ++
Sbjct: 379 NERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVL 438
Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
++M E GL+PD + + ++ + ++ +AL + M E D I Y++L+ +
Sbjct: 439 EDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQ 498
Query: 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG 470
+EA L+E+M L PD ++YTA++N Y G+++ A++L EM E GV +V+
Sbjct: 499 RRTKEACDLYEEM-LRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVT 557
Query: 471 CTCLIQCLGKARRIDDLVRVF 491
+ LI L K R + R+
Sbjct: 558 YSVLINGLNKQSRTREAKRLL 578
Score = 98.2 bits (243), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 125/267 (46%), Gaps = 21/267 (7%)
Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
D ++YST+++ R DEA+ M + G+ PD +TYS+++ + + + +E LY
Sbjct: 449 DVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLY 508
Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
E + G PD ++ L + GD + + EM GV P++V Y+ L+ + K
Sbjct: 509 EEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQ 568
Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
+ A+ L ++ P + T LI EN ++F
Sbjct: 569 SRTREAKRLLLKLFYEESVPSDVTYHTLI--------------------ENCSNIEFKSV 608
Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
+L+ G++ EA+++FE M L KPD +Y M++ + G++ A L++EM
Sbjct: 609 VSLIKGFCMKGMMTEADQVFESM-LGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMV 667
Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDL 487
+ G ++ + L++ L K ++++L
Sbjct: 668 KSGFLLHTVTVIALVKALHKEGKVNEL 694
Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/347 (22%), Positives = 148/347 (42%), Gaps = 19/347 (5%)
Query: 173 FFNWIKSQNLFPM--ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEI---------ELD 221
F NW F + + I ++ K + L E +A + + +E E
Sbjct: 68 FLNWANPHQFFTLRCKCITLHILTKFKLYKTAQILAEDVAAKTLDDEYASLVFKSLQETY 127
Query: 222 NITYST------IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK-VE 274
++ YST ++ R +L D+A+ G MP ++Y+A+LD +S + +
Sbjct: 128 DLCYSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNIS 187
Query: 275 EVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLL 334
++++ + S P+ +++L + F +G+ D + +M++ G PN+V YNTL+
Sbjct: 188 FAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLI 247
Query: 335 EAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWP 394
+ K K L M GL P+ + +I + K+ + M +
Sbjct: 248 DGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYS 307
Query: 395 MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIE 454
+D + YNTL+ G +A + +M L P +YT++++ GN++ A+E
Sbjct: 308 LDEVTYNTLIKGYCKEGNFHQALVMHAEM-LRHGLTPSVITYTSLIHSMCKAGNMNRAME 366
Query: 455 LFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
++M G+ N T L+ + +++ RV D G P
Sbjct: 367 FLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSP 413
Score = 47.0 bits (110), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/201 (20%), Positives = 83/201 (41%), Gaps = 15/201 (7%)
Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD-- 265
QL NEMV + D +TYS +I + + EA +++ +P +VTY +++
Sbjct: 541 QLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENC 600
Query: 266 -------------VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIR 312
+ G + E ++E + KPD A++++ +GD
Sbjct: 601 SNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAY 660
Query: 313 YVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIY 372
+ +EM G + V L++A+ K GK S+ ++ S + + L++I
Sbjct: 661 TLYKEMVKSGFLLHTVTVIALVKALHKEGKVNELNSVIVHVLRSCELSEAEQAKVLVEIN 720
Query: 373 GKARWAKDALELWERMRENKW 393
+ L++ M ++ +
Sbjct: 721 HREGNMDVVLDVLAEMAKDGF 741
Score = 38.5 bits (88), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/143 (20%), Positives = 59/143 (41%), Gaps = 3/143 (2%)
Query: 222 NITYSTIITCAKR-C--NLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS 278
NI + ++++ K C + EA + FE M PD Y+ ++ + ++G + + +
Sbjct: 602 NIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYT 661
Query: 279 LYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMG 338
LY+ V SG+ + L K + G + + V+ + L+E
Sbjct: 662 LYKEMVKSGFLLHTVTVIALVKALHKEGKVNELNSVIVHVLRSCELSEAEQAKVLVEINH 721
Query: 339 KAGKPGLARSLFDEMVESGLTPD 361
+ G + + EM + G P+
Sbjct: 722 REGNMDVVLDVLAEMAKDGFLPN 744
>sp|Q9FLL3|PP412_ARATH Pentatricopeptide repeat-containing protein At5g41170,
mitochondrial OS=Arabidopsis thaliana GN=At5g41170 PE=2
SV=1
Length = 527
Score = 131 bits (330), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 96/355 (27%), Positives = 179/355 (50%), Gaps = 13/355 (3%)
Query: 161 LNSLKFWQKSYFFFNWIKSQNLFPMETI-----FYNVTMKSLRFGRQFQLIEQLANEMVS 215
L+SL+F + F + ++S+ P+ +I NV K +F L + L VS
Sbjct: 48 LHSLQFNEALDLFTHMVESR---PLPSIIDFTKLLNVIAKMKKFDVVINLCDHLQIMGVS 104
Query: 216 NEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEE 275
+++ N+ ++ C + + A + +M K G PD VT++++++ + ++EE
Sbjct: 105 HDLYTCNL----LMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEE 160
Query: 276 VLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLE 335
+S+ + V G KPD + ++ + ++G + + +M++ G++P++V+Y +L+
Sbjct: 161 AMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVN 220
Query: 336 AMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPM 395
+ +G+ A SL M + + PD T ALI + K DA EL+ M
Sbjct: 221 GLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAP 280
Query: 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIEL 455
+ Y +L+N G V+EA ++F M+ + C PD +YT+++N + VD+A+++
Sbjct: 281 NIFTYTSLINGFCMEGCVDEARQMFYLME-TKGCFPDVVAYTSLINGFCKCKKVDDAMKI 339
Query: 456 FEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
F EMS+ G+ N + T LIQ G+ + + VF + RGV P+ R LL
Sbjct: 340 FYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLL 394
Score = 109 bits (272), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 83/319 (26%), Positives = 151/319 (47%), Gaps = 2/319 (0%)
Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
+ + Y + SL L ++M + I D + Y++++ + +A
Sbjct: 176 DVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLL 235
Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
M K + PD +T++A++D + K GK + LY + P+ ++ L F
Sbjct: 236 RGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCME 295
Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
G D R + M++ G P++V Y +L+ K K A +F EM + GLT + T
Sbjct: 296 GCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITY 355
Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
T LI+ +G+ A E++ M P + YN LL+ G V++A +FEDM+
Sbjct: 356 TTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQK 415
Query: 426 S--DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483
D P+ ++Y +L+ G ++ A+ +FE+M + + I ++ T +IQ + KA +
Sbjct: 416 REMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGK 475
Query: 484 IDDLVRVFGVSIDRGVKPD 502
+ + V +F +GVKP+
Sbjct: 476 VKNAVNLFCSLPSKGVKPN 494
Score = 108 bits (269), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 91/376 (24%), Positives = 163/376 (43%), Gaps = 14/376 (3%)
Query: 121 VRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTRENALL--ILNSLKFWQKSYFFFNWIK 178
+ +K F +N CD+ + I + H N L+ S + + S F +K
Sbjct: 82 IAKMKKFDVVINLCDHLQ------IMGVSHDLYTCNLLMNCFCQSSQPYLASSFLGKMMK 135
Query: 179 SQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLF 238
F + + + + G + + + N+MV I+ D + Y+TII +
Sbjct: 136 LG--FEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHV 193
Query: 239 DEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
+ A+ F++M G+ PD V Y+++++ SG+ + SL KPD I F+ L
Sbjct: 194 NYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNAL 253
Query: 299 GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
F + G + + EM + + PN+ Y +L+ G AR +F M G
Sbjct: 254 IDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKGC 313
Query: 359 TPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAER 418
PD T+LI + K + DA++++ M + + I Y TL+ +G A+
Sbjct: 314 FPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQE 373
Query: 419 LFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL---GVAINVMGCTCLI 475
+F M +S P+ +Y +L+ G V A+ +FE+M + GVA N+ L+
Sbjct: 374 VFSHM-VSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLL 432
Query: 476 QCLGKARRIDDLVRVF 491
L +++ + VF
Sbjct: 433 HGLCYNGKLEKALMVF 448
Score = 104 bits (259), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 79/279 (28%), Positives = 132/279 (47%), Gaps = 12/279 (4%)
Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
+ L M +I+ D IT++ +I + F +A E + M + + P+ TY+++++
Sbjct: 232 DSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLING 291
Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
+ G V+E ++ G PD +A++ L F + D + EM G+ N
Sbjct: 292 FCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGN 351
Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
+ Y TL++ G+ GKP +A+ +F MV G+ P+ +T L+ K AL ++E
Sbjct: 352 TITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFE 411
Query: 387 RMRENKWPMDFI-----LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
M+ K MD + YN LL+ G +E+A +FEDM+ + D T +
Sbjct: 412 DMQ--KREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREM---DIGIITYTII 466
Query: 442 IYG--SGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL 478
I G G V NA+ LF + GV NV+ T +I L
Sbjct: 467 IQGMCKAGKVKNAVNLFCSLPSKGVKPNVVTYTTMISGL 505
Score = 99.0 bits (245), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/322 (24%), Positives = 147/322 (45%), Gaps = 4/322 (1%)
Query: 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
F+EA++ F M ++ +P + ++ +L+V AK K + V++L + G D ++
Sbjct: 53 FNEALDLFTHMVESRPLPSIIDFTKLLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCNL 112
Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
L F +S L +M LG +P++V + +L+ + A S+ ++MVE G
Sbjct: 113 LMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMG 172
Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417
+ PD T +I K AL L+++M D ++Y +L+N + G +A+
Sbjct: 173 IKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDAD 232
Query: 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
L M KPD ++ A+++ + G +A EL+ EM + +A N+ T LI
Sbjct: 233 SLLRGMTKRKI-KPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLING 291
Query: 478 LGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PK 535
+D+ ++F + +G PD L++ C+ +D K+ + Q
Sbjct: 292 FCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGN 351
Query: 536 LVAFLNLIED-NSTGFENIKEE 556
+ + LI+ G N+ +E
Sbjct: 352 TITYTTLIQGFGQVGKPNVAQE 373
Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 116/279 (41%), Gaps = 42/279 (15%)
Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIIT--CAKRCNLFDEAIE 243
+ I +N + + +F E+L NEM+ I + TY+++I C + C DEA +
Sbjct: 246 DVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGC--VDEARQ 303
Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
F M G PD V Y+++++ + K KV++ + ++ G + I ++ L + FG
Sbjct: 304 MFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFG 363
Query: 304 ESGDYDGIRYVLQEMKSLGV--------------------------------------QP 325
+ G + + V M S GV P
Sbjct: 364 QVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAP 423
Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
N+ YN LL + GK A +F++M + + T T +I+ KA K+A+ L+
Sbjct: 424 NIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAVNLF 483
Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
+ + + Y T+++ GL EA LF MK
Sbjct: 484 CSLPSKGVKPNVVTYTTMISGLFREGLKHEAHVLFRKMK 522
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 85/184 (46%), Gaps = 3/184 (1%)
Query: 179 SQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLF 238
SQ TI Y ++ + + +++ + MVS + + TY+ ++ C
Sbjct: 344 SQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKV 403
Query: 239 DEAIEWFERMYK---TGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAF 295
+A+ FE M K G+ P+ TY+ +L +GK+E+ L ++E I +
Sbjct: 404 KKALMIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITY 463
Query: 296 SVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVE 355
+++ + ++G + + S GV+PN+V Y T++ + + G A LF +M E
Sbjct: 464 TIIIQGMCKAGKVKNAVNLFCSLPSKGVKPNVVTYTTMISGLFREGLKHEAHVLFRKMKE 523
Query: 356 SGLT 359
G++
Sbjct: 524 DGVS 527
>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620
OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1
Length = 621
Score = 130 bits (328), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 96/361 (26%), Positives = 166/361 (45%), Gaps = 5/361 (1%)
Query: 145 ITEIPHQPTRENALLILNSLKFWQK---SYFFFNWIKSQNLFPMETIFYNVTMKSLRFGR 201
+ E+ H+PT ++N L K + + + P E + Y +K +
Sbjct: 168 MVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNE-VTYGPVLKVMCKSG 226
Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS 261
Q L +L +M +I+LD + YS II + D A F M G D + Y+
Sbjct: 227 QTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYT 286
Query: 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
++ + +G+ ++ L + PD +AFS L F + G + +EM
Sbjct: 287 TLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQR 346
Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
G+ P+ V Y +L++ K + A + D MV G P+ +T LI Y KA D
Sbjct: 347 GISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDG 406
Query: 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
LEL+ +M D + YNTL+ ++G +E A+ LF++M +S +PD SY +L+
Sbjct: 407 LELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEM-VSRRVRPDIVSYKILLD 465
Query: 442 IYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
G + A+E+FE++ + + +++ +I + A ++DD +F +GVKP
Sbjct: 466 GLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKP 525
Query: 502 D 502
D
Sbjct: 526 D 526
Score = 116 bits (290), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 81/304 (26%), Positives = 137/304 (45%), Gaps = 1/304 (0%)
Query: 201 RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTY 260
+Q+ L+ L +M I + T S +I C RC A ++ K G PD VT+
Sbjct: 86 KQYDLVLDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTF 145
Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
S +++ G+V E L L +R V G KP I + L +G ++ M
Sbjct: 146 STLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVE 205
Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380
G QPN V Y +L+ M K+G+ LA L +M E + D + +I K +
Sbjct: 206 TGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDN 265
Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
A L+ M + D I+Y TL+ G ++ +L DM + PD +++A++
Sbjct: 266 AFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDM-IKRKITPDVVAFSALI 324
Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
+ + G + A EL +EM + G++ + + T LI K ++D + + + +G
Sbjct: 325 DCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCG 384
Query: 501 PDDR 504
P+ R
Sbjct: 385 PNIR 388
Score = 77.8 bits (190), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/239 (22%), Positives = 113/239 (47%)
Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
+T+ Y + Q + + MVS + T++ +I + NL D+ +E F
Sbjct: 351 DTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELF 410
Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
+M G++ D VTY+ ++ + + GK+E L++ V+ +PD +++ +L ++
Sbjct: 411 RKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDN 470
Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
G+ + + ++++ ++ ++ +YN ++ M A K A LF + G+ PD KT
Sbjct: 471 GEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTY 530
Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
+I K +A L+ +M E+ + YN L+ G ++ +L E++K
Sbjct: 531 NIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIK 589
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 90/199 (45%)
Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
+T+ YN ++ + ++ ++L EMVS + D ++Y ++ ++A+E F
Sbjct: 421 DTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIF 480
Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
E++ K+ + D Y+ I+ + KV++ L+ G KPD ++++ +
Sbjct: 481 EKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKK 540
Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
G + ++M+ G PN YN L+ A G + L +E+ G + D T+
Sbjct: 541 GSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTV 600
Query: 366 TALIKIYGKARWAKDALEL 384
++ + R K L++
Sbjct: 601 KMVVDMLSDGRLKKSFLDM 619
Score = 41.2 bits (95), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 67/154 (43%), Gaps = 1/154 (0%)
Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYG 373
+ QEM +P L+ ++ L + + + L L +M G+ + TL+ +I
Sbjct: 59 LFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCCC 118
Query: 374 KARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDN 433
+ R A ++ + + D + ++TL+N G V EA L + M + KP
Sbjct: 119 RCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGH-KPTL 177
Query: 434 YSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
+ A++N G V +A+ L + M E G N
Sbjct: 178 ITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPN 211
Score = 38.1 bits (87), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 36/175 (20%), Positives = 74/175 (42%), Gaps = 3/175 (1%)
Query: 346 ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405
A LF EM S P + L + + + L+L ++M + + ++N
Sbjct: 56 AVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMIN 115
Query: 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
C + A + Y +PD +++ ++N G V A+EL + M E+G
Sbjct: 116 CCCRCRKLSLAFSAMGKIIKLGY-EPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHK 174
Query: 466 INVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSE 520
++ L+ L ++ D V + ++ G +P++ G +L V +C++ +
Sbjct: 175 PTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKV--MCKSGQ 227
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 130 bits (327), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 85/289 (29%), Positives = 148/289 (51%), Gaps = 4/289 (1%)
Query: 199 FGRQFQLIE--QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPD 256
F ++ +L+E +L NEM++ I D ITY+++I + N EA + F+ M G PD
Sbjct: 325 FVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPD 384
Query: 257 EVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQ 316
VTYS +++ Y K+ +V++ + L+ + G P+ I ++ L F +SG + + + Q
Sbjct: 385 IVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQ 444
Query: 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
EM S GV P++V Y LL+ + G+ A +F++M +S +T +I A
Sbjct: 445 EMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNAS 504
Query: 377 WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY 436
DA L+ + + D + YN ++ G + EA+ LF MK D C PD+++Y
Sbjct: 505 KVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMK-EDGCTPDDFTY 563
Query: 437 TAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
++ + G + +++EL EEM G + + +I L RR+D
Sbjct: 564 NILIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKMVIDMLSD-RRLD 611
Score = 125 bits (313), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 86/312 (27%), Positives = 148/312 (47%), Gaps = 3/312 (0%)
Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
L + MV + D +T ST+I EA+ +RM + G PDEVTY +L+
Sbjct: 162 LVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLC 221
Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
KSG L L+ + K + +S++ + G +D + EM+ G++ ++V
Sbjct: 222 KSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVV 281
Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
Y++L+ + GK + EM+ + PD T +ALI ++ K +A EL+ M
Sbjct: 282 TYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEM 341
Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
D I YN+L++ + EA ++F D+ +S C+PD +Y+ ++N Y
Sbjct: 342 ITRGIAPDTITYNSLIDGFCKENCLHEANQMF-DLMVSKGCEPDIVTYSILINSYCKAKR 400
Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGC 508
VD+ + LF E+S G+ N + L+ ++ +++ +F + RGV P G
Sbjct: 401 VDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGI 460
Query: 509 LLSVVSLCETSE 520
LL LC+ E
Sbjct: 461 LLD--GLCDNGE 470
Score = 120 bits (302), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 81/295 (27%), Positives = 139/295 (47%), Gaps = 1/295 (0%)
Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
L +M I+ + YS +I + FD+A+ F M G+ D VTYS+++
Sbjct: 231 DLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGL 290
Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
GK ++ + + PD + FS L +F + G + + EM + G+ P+
Sbjct: 291 CNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDT 350
Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
+ YN+L++ K A +FD MV G PD T + LI Y KA+ D + L+
Sbjct: 351 ITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFRE 410
Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
+ + I YNTL+ G + A+ LF++M +S P +Y +L+ G
Sbjct: 411 ISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEM-VSRGVPPSVVTYGILLDGLCDNG 469
Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
++ A+E+FE+M + + + + +I + A ++DD +F D+GVKPD
Sbjct: 470 ELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPD 524
Score = 106 bits (264), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 82/332 (24%), Positives = 150/332 (45%), Gaps = 5/332 (1%)
Query: 172 FFFNWIKSQNLFPMET-IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIIT 230
F + I+S+ P+ T I +N ++ +Q+ L+ M N IE D T + +I
Sbjct: 57 LFESMIQSR---PLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMIN 113
Query: 231 CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
C R A R +K G PD +T+S +++ + G+V E ++L +R V +P
Sbjct: 114 CYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRP 173
Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
D + S L G ++ M G QP+ V Y +L + K+G LA LF
Sbjct: 174 DLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLF 233
Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
+M E + + +I K DAL L+ M D + Y++L+ +
Sbjct: 234 RKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCND 293
Query: 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG 470
G ++ ++ +M + PD +++A+++++ G + A EL+ EM G+A + +
Sbjct: 294 GKWDDGAKMLREM-IGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTIT 352
Query: 471 CTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
LI K + + ++F + + +G +PD
Sbjct: 353 YNSLIDGFCKENCLHEANQMFDLMVSKGCEPD 384
Score = 90.1 bits (222), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 120/257 (46%), Gaps = 3/257 (1%)
Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
+N + ++ + P +TI YN + Q+ + MVS E D +TYS +I
Sbjct: 337 LYNEMITRGIAP-DTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSY 395
Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
+ D+ + F + GL+P+ +TY+ ++ + +SGK+ L++ V+ G P
Sbjct: 396 CKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSV 455
Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
+ + +L ++G+ + + ++M+ + + +YN ++ M A K A SLF
Sbjct: 456 VTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCS 515
Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM-CADIG 411
+ + G+ PD T +I K +A L+ +M+E+ D YN L+ G
Sbjct: 516 LSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSG 575
Query: 412 LVEEAERLFEDMKLSDY 428
L+ E L E+MK+ +
Sbjct: 576 LISSVE-LIEEMKVCGF 591
Score = 73.9 bits (180), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 104/231 (45%), Gaps = 1/231 (0%)
Query: 272 KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYN 331
KV + + L+E + S P PI F+ L + YD + + M+ G++ ++
Sbjct: 50 KVNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMT 109
Query: 332 TLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN 391
++ + K A S+ + G PD T + L+ + +A+ L +RM E
Sbjct: 110 IMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEM 169
Query: 392 KWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDN 451
K D + +TL+N G V EA L + M + +PD +Y +LN GN
Sbjct: 170 KQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGF-QPDEVTYGPVLNRLCKSGNSAL 228
Query: 452 AIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
A++LF +M E + +V+ + +I L K DD + +F +G+K D
Sbjct: 229 ALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKAD 279
>sp|Q9SHK2|PPR17_ARATH Pentatricopeptide repeat-containing protein At1g06580
OS=Arabidopsis thaliana GN=At1g06580 PE=2 SV=1
Length = 500
Score = 130 bits (326), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 91/371 (24%), Positives = 184/371 (49%), Gaps = 8/371 (2%)
Query: 161 LNSLKFWQKSYFFFNWIKSQNLFPMETIF-YNVTMKSLRFGRQFQLIEQLANEMVSNEIE 219
L+S+KF F + +S P+ +I ++ + ++ +++ + L + I
Sbjct: 55 LHSIKFNDALTLFCDMAESH---PLPSIVDFSRLLIAIAKLNKYEAVISLFRHLEMLGIS 111
Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
D +++T+I C RC A+ +M K G P VT+ ++++ + + E +SL
Sbjct: 112 HDLYSFTTLIDCFCRCARLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRFYEAMSL 171
Query: 280 YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
++ V G++P+ + ++ + E G + VL+ MK +G++P++V YN+L+ +
Sbjct: 172 VDQIVGLGYEPNVVIYNTIIDSLCEKGQVNTALDVLKHMKKMGIRPDVVTYNSLITRLFH 231
Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
+G G++ + +M+ G++PD T +ALI +YGK +A + + M + + +
Sbjct: 232 SGTWGVSARILSDMMRMGISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVT 291
Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
YN+L+N GL++EA+++ ++ +S P+ +Y ++N Y VD+ +++ M
Sbjct: 292 YNSLINGLCIHGLLDEAKKVL-NVLVSKGFFPNAVTYNTLINGYCKAKRVDDGMKILCVM 350
Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETS 519
S GV + L Q +A + +V G + GV PD LL LC+
Sbjct: 351 SRDGVDGDTFTYNTLYQGYCQAGKFSAAEKVLGRMVSCGVHPDMYTFNILLD--GLCDHG 408
Query: 520 EDVGKVITCLQ 530
+ +GK + L+
Sbjct: 409 K-IGKALVRLE 418
Score = 105 bits (262), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/305 (25%), Positives = 136/305 (44%), Gaps = 5/305 (1%)
Query: 198 RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDE 257
RF L++Q+ V E + + Y+TII + A++ + M K G+ PD
Sbjct: 164 RFYEAMSLVDQI----VGLGYEPNVVIYNTIIDSLCEKGQVNTALDVLKHMKKMGIRPDV 219
Query: 258 VTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQE 317
VTY++++ SG + + G PD I FS L ++G+ G + E
Sbjct: 220 VTYNSLITRLFHSGTWGVSARILSDMMRMGISPDVITFSALIDVYGKEGQLLEAKKQYNE 279
Query: 318 MKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARW 377
M V PN+V YN+L+ + G A+ + + +V G P+ T LI Y KA+
Sbjct: 280 MIQRSVNPNIVTYNSLINGLCIHGLLDEAKKVLNVLVSKGFFPNAVTYNTLINGYCKAKR 339
Query: 378 AKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYT 437
D +++ M + D YNTL G AE++ M +S PD Y++
Sbjct: 340 VDDGMKILCVMSRDGVDGDTFTYNTLYQGYCQAGKFSAAEKVLGRM-VSCGVHPDMYTFN 398
Query: 438 AMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDR 497
+L+ G + A+ E++ + + ++ +I+ L KA +++D +F +
Sbjct: 399 ILLDGLCDHGKIGKALVRLEDLQKSKTVVGIITYNIIIKGLCKADKVEDAWYLFCSLALK 458
Query: 498 GVKPD 502
GV PD
Sbjct: 459 GVSPD 463
Score = 83.6 bits (205), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 109/235 (46%), Gaps = 2/235 (0%)
Query: 199 FGRQFQLIE--QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPD 256
+G++ QL+E + NEM+ + + +TY+++I L DEA + + G P+
Sbjct: 264 YGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGLLDEAKKVLNVLVSKGFFPN 323
Query: 257 EVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQ 316
VTY+ +++ Y K+ +V++ + + G D ++ L + + ++G + VL
Sbjct: 324 AVTYNTLINGYCKAKRVDDGMKILCVMSRDGVDGDTFTYNTLYQGYCQAGKFSAAEKVLG 383
Query: 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
M S GV P++ +N LL+ + GK G A +++ +S T +IK KA
Sbjct: 384 RMVSCGVHPDMYTFNILLDGLCDHGKIGKALVRLEDLQKSKTVVGIITYNIIIKGLCKAD 443
Query: 377 WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431
+DA L+ + D I Y T++ L EA L+ M+ D P
Sbjct: 444 KVEDAWYLFCSLALKGVSPDVITYITMMIGLRRKRLWREAHELYRKMQKEDGLMP 498
>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850,
chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1
Length = 1112
Score = 129 bits (325), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 109/428 (25%), Positives = 192/428 (44%), Gaps = 16/428 (3%)
Query: 85 PLLSKPKSTWVNPTKPRR--SVLSLQRQKRSTYSYNPRVRDLKLFARKLNDCDNTEEAF- 141
P L S V K R SV+ L ++ T P V + R L EA+
Sbjct: 221 PSLQTYSSLMVGLGKRRDIDSVMGLLKEME-TLGLKPNVYTFTICIRVLGRAGKINEAYE 279
Query: 142 -LRAITEIPHQPTRENALLILNSLKFWQK---SYFFFNWIKSQNLFPMETIFYNVTMKSL 197
L+ + + P +++++L +K + F +K+ P + + Y +
Sbjct: 280 ILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKP-DRVTYITLLDRF 338
Query: 198 RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDE 257
R ++Q +EM + D +T++ ++ + F EA + + M G++P+
Sbjct: 339 SDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNL 398
Query: 258 VTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQE 317
TY+ ++ + ++++ L L+ + G KP + V +G+SGD ++
Sbjct: 399 HTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEK 458
Query: 318 MKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARW 377
MK+ G+ PN+V N L ++ KAG+ A+ +F + + GL PD T ++K Y K
Sbjct: 459 MKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGE 518
Query: 378 AKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLF---EDMKLSDYCKPDNY 434
+A++L M EN D I+ N+L+N V+EA ++F ++MKL KP
Sbjct: 519 IDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKL----KPTVV 574
Query: 435 SYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVS 494
+Y +L G G + AIELFE M + G N + L CL K + +++
Sbjct: 575 TYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKM 634
Query: 495 IDRGVKPD 502
+D G PD
Sbjct: 635 MDMGCVPD 642
Score = 119 bits (299), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 88/353 (24%), Positives = 161/353 (45%), Gaps = 1/353 (0%)
Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
P + E L S S+ +F + T N +++LR + + +
Sbjct: 80 PDLSSSEEVTRGLKSFPDTDSSFSYFKSVAGNLNLVHTTETCNYMLEALRVDGKLEEMAY 139
Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
+ + M I+ D TY TI +A +M + G + + +Y+ ++ +
Sbjct: 140 VFDLMQKRIIKRDTNTYLTIFKSLSVKGGLKQAPYALRKMREFGFVLNAYSYNGLIHLLL 199
Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
KS E + +Y R + G++P +S L G+ D D + +L+EM++LG++PN+
Sbjct: 200 KSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVY 259
Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
+ + +G+AGK A + M + G PD T T LI AR A E++E+M
Sbjct: 260 TFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKM 319
Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
+ + D + Y TLL+ +D ++ ++ + +M+ D PD ++T +++ GN
Sbjct: 320 KTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEME-KDGHVPDVVTFTILVDALCKAGN 378
Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
A + + M + G+ N+ LI L + R+DD + +FG GVKP
Sbjct: 379 FGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKP 431
Score = 115 bits (289), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 81/315 (25%), Positives = 139/315 (44%), Gaps = 36/315 (11%)
Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
TY+ +I ++ + A + F ++ TG +PD TY+ +LD Y KSGK++E+ LY+
Sbjct: 787 TYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEM 846
Query: 284 --------------VASG----------------------WKPDPIAFSVLGKMFGESGD 307
V SG + P + L +SG
Sbjct: 847 STHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGR 906
Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
+ + + M G +PN +YN L+ GKAG+ A +LF MV+ G+ PD KT +
Sbjct: 907 LYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSV 966
Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
L+ + L ++ ++E+ D + YN ++N +EEA LF +MK S
Sbjct: 967 LVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSR 1026
Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
PD Y+Y +++ G G V+ A +++ E+ G+ NV LI+ + + +
Sbjct: 1027 GITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHA 1086
Query: 488 VRVFGVSIDRGVKPD 502
V+ + G P+
Sbjct: 1087 YAVYQTMVTGGFSPN 1101
Score = 112 bits (279), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 88/338 (26%), Positives = 146/338 (43%), Gaps = 39/338 (11%)
Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
TI + K+ FG F ++ + ++ + + TY+T+I R + D+A+E F
Sbjct: 367 TILVDALCKAGNFGEAFDTLDVMRDQGILPNLH----TYNTLICGLLRVHRLDDALELFG 422
Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
M G+ P TY +D Y KSG L +E+ G P+ +A + ++G
Sbjct: 423 NMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAG 482
Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
+ + +K +G+ P+ V YN +++ K G+ A L EM+E+G PD +
Sbjct: 483 RDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVN 542
Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM--- 423
+LI KA +A +++ RM+E K + YNTLL G ++EA LFE M
Sbjct: 543 SLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQK 602
Query: 424 ------------------------------KLSDY-CKPDNYSYTAMLNIYGSGGNVDNA 452
K+ D C PD ++Y ++ G V A
Sbjct: 603 GCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEA 662
Query: 453 IELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRV 490
+ F +M +L V CT L+ + KA I+D ++
Sbjct: 663 MCFFHQMKKLVYPDFVTLCT-LLPGVVKASLIEDAYKI 699
Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 81/325 (24%), Positives = 154/325 (47%), Gaps = 6/325 (1%)
Query: 228 IITCAKRCNLFDEAIEWFERMYKT-GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
II + + N A FE+ K G+ P TY+ ++ ++ +E ++ + ++
Sbjct: 755 IIRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKST 814
Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
G PD ++ L +G+SG D + + +EM + + N + +N ++ + KAG A
Sbjct: 815 GCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDA 874
Query: 347 RSLF-DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405
L+ D M + +P T LI K+ +A +L+E M + + +YN L+N
Sbjct: 875 LDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILIN 934
Query: 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
G + A LF+ M + + +PD +Y+ +++ G VD + F+E+ E G+
Sbjct: 935 GFGKAGEADAACALFKRM-VKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLN 993
Query: 466 INVMGCTCLIQCLGKARRIDDLVRVFG-VSIDRGVKPDDRLCGCLLSVVSLCETSEDVGK 524
+V+ +I LGK+ R+++ + +F + RG+ PD L+ + + E+ GK
Sbjct: 994 PDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGK 1053
Query: 525 VITCLQQAN--PKLVAFLNLIEDNS 547
+ +Q+A P + F LI S
Sbjct: 1054 IYNEIQRAGLEPNVFTFNALIRGYS 1078
Score = 90.9 bits (224), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 116/244 (47%), Gaps = 1/244 (0%)
Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
D++TY+ ++ C + DEAI+ M + G PD + +++++ K+ +V+E ++
Sbjct: 502 DSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMF 561
Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
R KP + ++ L G++G + + M G PN + +NTL + + K
Sbjct: 562 MRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKN 621
Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
+ LA + +M++ G PD T +I K K+A+ + +M++ +P DF+
Sbjct: 622 DEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKLVYP-DFVTL 680
Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
TLL L+E+A ++ + + +P N + ++ + +DNA+ E +
Sbjct: 681 CTLLPGVVKASLIEDAYKIITNFLYNCADQPANLFWEDLIGSILAEAGIDNAVSFSERLV 740
Query: 461 ELGV 464
G+
Sbjct: 741 ANGI 744
Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 97/400 (24%), Positives = 169/400 (42%), Gaps = 42/400 (10%)
Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
P TI +N L + L ++ +M+ D TY+TII + EA+
Sbjct: 605 PPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMC 664
Query: 244 WFERMYK---------TGLMPDEVTYSAILDVY--------------------------- 267
+F +M K L+P V S I D Y
Sbjct: 665 FFHQMKKLVYPDFVTLCTLLPGVVKASLIEDAYKIITNFLYNCADQPANLFWEDLIGSIL 724
Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSV-LGKMFGESGDYDGIRYVLQEM-KSLGVQP 325
A++G ++ +S ER VA+G D + V + + + + G R + ++ K LGVQP
Sbjct: 725 AEAG-IDNAVSFSERLVANGICRDGDSILVPIIRYSCKHNNVSGARTLFEKFTKDLGVQP 783
Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
L YN L+ + +A +A+ +F ++ +G PD T L+ YGK+ + EL+
Sbjct: 784 KLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELY 843
Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445
+ M ++ + I +N +++ G V++A L+ D+ P +Y +++
Sbjct: 844 KEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSK 903
Query: 446 GGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRL 505
G + A +LFE M + G N LI GKA D +F + GV+PD +
Sbjct: 904 SGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKT 963
Query: 506 CGCLLSVVSLCETSEDVGKVITCLQQA--NPKLVAFLNLI 543
L+ + + ++ L+++ NP +V + NLI
Sbjct: 964 YSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCY-NLI 1002
Score = 83.2 bits (204), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 86/180 (47%), Gaps = 1/180 (0%)
Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
YN+ + + L MV + D TYS ++ C DE + +F+ +
Sbjct: 929 YNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELK 988
Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLY-ERGVASGWKPDPIAFSVLGKMFGESGDY 308
++GL PD V Y+ I++ KS ++EE L L+ E + G PD ++ L G +G
Sbjct: 989 ESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMV 1048
Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
+ + E++ G++PN+ +N L+ +GKP A +++ MV G +P+ T L
Sbjct: 1049 EEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQL 1108
Score = 63.9 bits (154), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 69/296 (23%), Positives = 128/296 (43%), Gaps = 10/296 (3%)
Query: 319 KSLGVQPNLV----VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK 374
KS+ NLV N +LEA+ GK +FD M + + D T + K
Sbjct: 106 KSVAGNLNLVHTTETCNYMLEALRVDGKLEEMAYVFDLMQKRIIKRDTNTYLTIFKSLSV 165
Query: 375 ARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNY 434
K A +MRE + ++ YN L+++ EA ++ M L + +P
Sbjct: 166 KGGLKQAPYALRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGF-RPSLQ 224
Query: 435 SYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVS 494
+Y++++ G ++D+ + L +EM LG+ NV T I+ LG+A +I++ +
Sbjct: 225 TYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRM 284
Query: 495 IDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQA--NPKLVAFLNLIE--DNSTGF 550
D G PD L+ + + +V ++ P V ++ L++ ++
Sbjct: 285 DDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDL 344
Query: 551 ENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLH 606
+++K+ + + KD V F + +C+ N E A + L + G+ P LH
Sbjct: 345 DSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGE-AFDTLDVMRDQGILPNLH 399
>sp|Q9CAN6|PPR97_ARATH Pentatricopeptide repeat-containing protein At1g63070,
mitochondrial OS=Arabidopsis thaliana GN=At1g63070 PE=1
SV=1
Length = 590
Score = 129 bits (323), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 94/329 (28%), Positives = 160/329 (48%), Gaps = 15/329 (4%)
Query: 179 SQNLFPMETIFYNVTMKSLRFGRQFQLIEQLA--NEMVSNEIELDNITYSTIITCAKRCN 236
S NL+ +IF N F R+ QL LA +M+ +T ++++ N
Sbjct: 107 SHNLYTY-SIFINY------FCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGN 159
Query: 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS 296
EA+ ++M + G PD VT++ ++ + K E ++L ER V G +PD + +
Sbjct: 160 RISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYG 219
Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356
+ + G+ D +L +M+ ++ ++V+YNT+++ + K A LF++M
Sbjct: 220 AVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETK 279
Query: 357 GLTPDEKTLTALIKI---YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
G+ PD T LI YG RW+ DA L M E D + +N L++ G +
Sbjct: 280 GIKPDVFTYNPLISCLCNYG--RWS-DASRLLSDMLEKNINPDLVFFNALIDAFVKEGKL 336
Query: 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTC 473
EAE+L+++M S +C PD +Y ++ + V+ +E+F EMS+ G+ N + T
Sbjct: 337 VEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTT 396
Query: 474 LIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
LI +AR D+ VF + GV PD
Sbjct: 397 LIHGFFQARDCDNAQMVFKQMVSDGVHPD 425
Score = 114 bits (284), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 80/295 (27%), Positives = 144/295 (48%), Gaps = 2/295 (0%)
Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
L MV + D +TY +I + D A+ +M K + D V Y+ I+D
Sbjct: 202 LVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLC 261
Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
K +++ L+ + G KPD ++ L G + +L +M + P+LV
Sbjct: 262 KYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLV 321
Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVES-GLTPDEKTLTALIKIYGKARWAKDALELWER 387
+N L++A K GK A L+DEMV+S PD LIK + K + ++ +E++
Sbjct: 322 FFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFRE 381
Query: 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
M + + + Y TL++ + A+ +F+ M +SD PD +Y +L+ + G
Sbjct: 382 MSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQM-VSDGVHPDIMTYNILLDGLCNNG 440
Query: 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
NV+ A+ +FE M + + ++++ T +I+ L KA +++D +F +GVKP+
Sbjct: 441 NVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPN 495
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/269 (29%), Positives = 128/269 (47%), Gaps = 2/269 (0%)
Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
L N+M +IE D + Y+TII + D+A + F +M G+ PD TY+ ++
Sbjct: 236 NLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCL 295
Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEM-KSLGVQPN 326
G+ + L + PD + F+ L F + G + EM KS P+
Sbjct: 296 CNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPD 355
Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
+V YNTL++ K + +F EM + GL + T T LI + +AR +A +++
Sbjct: 356 VVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFK 415
Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
+M + D + YN LL+ + G VE A +FE M+ D K D +YT M+
Sbjct: 416 QMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDM-KLDIVTYTTMIEALCKA 474
Query: 447 GNVDNAIELFEEMSELGVAINVMGCTCLI 475
G V++ +LF +S GV NV+ T ++
Sbjct: 475 GKVEDGWDLFCSLSLKGVKPNVVTYTTMM 503
Score = 92.8 bits (229), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 115/265 (43%), Gaps = 1/265 (0%)
Query: 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
D+AI F M K+ P V +S +L AK K + V+SL E+ G + +S+
Sbjct: 56 LDDAIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSI 115
Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
F +L +M LG P++V N+LL + A +L D+MVE G
Sbjct: 116 FINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMG 175
Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417
PD T T L+ + A +A+ L ERM D + Y ++N G + A
Sbjct: 176 YQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLAL 235
Query: 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
L M+ + D Y +++ ++D+A +LF +M G+ +V LI C
Sbjct: 236 NLLNKME-KGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISC 294
Query: 478 LGKARRIDDLVRVFGVSIDRGVKPD 502
L R D R+ +++ + PD
Sbjct: 295 LCNYGRWSDASRLLSDMLEKNINPD 319
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/303 (24%), Positives = 145/303 (47%), Gaps = 5/303 (1%)
Query: 165 KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNI 223
K ++ FN ++++ + P + YN + L +GR + +L ++M+ I D +
Sbjct: 264 KHMDDAFDLFNKMETKGIKP-DVFTYNPLISCLCNYGR-WSDASRLLSDMLEKNINPDLV 321
Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKT-GLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
++ +I + EA + ++ M K+ PD V Y+ ++ + K +VEE + ++
Sbjct: 322 FFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFRE 381
Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
G + + ++ L F ++ D D + V ++M S GV P+++ YN LL+ + G
Sbjct: 382 MSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGN 441
Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
A +F+ M + + D T T +I+ KA +D +L+ + + + Y T
Sbjct: 442 VETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTT 501
Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
+++ GL EEA+ LF +MK D P++ +Y ++ G+ + EL +EM
Sbjct: 502 MMSGFCRKGLKEEADALFVEMK-EDGPLPNSGTYNTLIRARLRDGDEAASAELIKEMRSC 560
Query: 463 GVA 465
G A
Sbjct: 561 GFA 563
Score = 85.1 bits (209), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 111/239 (46%), Gaps = 1/239 (0%)
Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
+ +S +++ + N FD I E+M G+ + TYS ++ + + ++ L++ +
Sbjct: 76 VEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIFINYFCRRSQLSLALAILGK 135
Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
+ G+ P + + L F ++ +M +G QP+ V + TL+ + + K
Sbjct: 136 MMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNK 195
Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
A +L + MV G PD T A+I K AL L +M + K D ++YNT
Sbjct: 196 ASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNT 255
Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461
+++ +++A LF M+ + KPD ++Y +++ + G +A L +M E
Sbjct: 256 IIDGLCKYKHMDDAFDLFNKME-TKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLE 313
Score = 70.5 bits (171), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 87/206 (42%)
Query: 179 SQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLF 238
SQ T+ Y + R + + +MVS+ + D +TY+ ++
Sbjct: 383 SQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNV 442
Query: 239 DEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
+ A+ FE M K + D VTY+ +++ K+GKVE+ L+ G KP+ + ++ +
Sbjct: 443 ETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTM 502
Query: 299 GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
F G + + EMK G PN YNTL+ A + G + L EM G
Sbjct: 503 MSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARLRDGDEAASAELIKEMRSCGF 562
Query: 359 TPDEKTLTALIKIYGKARWAKDALEL 384
D T + + R K L++
Sbjct: 563 AGDASTFGLVTNMLHDGRLDKSFLDM 588
>sp|Q9LUJ4|PP248_ARATH Pentatricopeptide repeat-containing protein At3g22670,
mitochondrial OS=Arabidopsis thaliana GN=At3g22670 PE=2
SV=1
Length = 562
Score = 128 bits (321), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 126/552 (22%), Positives = 230/552 (41%), Gaps = 66/552 (11%)
Query: 1 MAASLSTALDVHLSIPKSDTKRPIFLTKPTRRSHPIKINISCNSKSSENVAAESPN-PET 59
M L + V ++P+ +R +T T PI VAAESP P
Sbjct: 1 MLTKLRISKLVSYTLPRRIFQRRFLVTNNTAEESPI-------------VAAESPELPSW 47
Query: 60 KTLSLSEQLKPLSSTTLSPTKNDRTPLLSKPKSTWVNPTKPRRSVLSLQRQKRSTYSYNP 119
LS + SS+ ++ P L+ WV K S Q+ P
Sbjct: 48 IKDFLSNKPSSSSSSVSKDDEDFVIPSLA----NWVESQK-----FSRQQVSEGNVVKKP 98
Query: 120 RVRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTRENALLILNSL-KFWQKSYFFFNWIK 178
V D+ LN D + E ++ +++ T L +L W ++Y FF W
Sbjct: 99 -VEDIDKVCDFLNKKDTSHEDVVKELSKCDVVVTESLVLQVLRRFSNGWNQAYGFFIWAN 157
Query: 179 SQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNE--------------------- 217
SQ + YN + L R F L+ +L NEM NE
Sbjct: 158 SQTGYVHSGHTYNAMVDVLGKCRNFDLMWELVNEMNKNEESKLVTLDTMSKVMRRLAKSG 217
Query: 218 -----------------IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTY 260
++ D I ++++ + N + A E F +++ T + PD T+
Sbjct: 218 KYNKAVDAFLEMEKSYGVKTDTIAMNSLMDALVKENSIEHAHEVFLKLFDT-IKPDARTF 276
Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
+ ++ + K+ K ++ ++ + + + PD + ++ + + + GD+ + +L+EM+
Sbjct: 277 NILIHGFCKARKFDDARAMMDLMKVTEFTPDVVTYTSFVEAYCKEGDFRRVNEMLEEMRE 336
Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380
G PN+V Y ++ ++GK+ + A ++++M E G PD K ++LI I K KD
Sbjct: 337 NGCNPNVVTYTIVMHSLGKSKQVAEALGVYEKMKEDGCVPDAKFYSSLIHILSKTGRFKD 396
Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM--KLSDYCKPDNYSYTA 438
A E++E M D ++YNT+++ E A RL + M + + C P+ +Y
Sbjct: 397 AAEIFEDMTNQGVRRDVLVYNTMISAALHHSRDEMALRLLKRMEDEEGESCSPNVETYAP 456
Query: 439 MLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRG 498
+L + + L M + V+I+V LI+ L + ++++ F ++ +G
Sbjct: 457 LLKMCCHKKKMKLLGILLHHMVKNDVSIDVSTYILLIRGLCMSGKVEEACLFFEEAVRKG 516
Query: 499 VKPDDRLCGCLL 510
+ P D C L+
Sbjct: 517 MVPRDSTCKMLV 528
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 128 bits (321), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 143/292 (48%), Gaps = 1/292 (0%)
Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
+EM+ I D +TY++II + D+A+E M K G+MPD +TY++IL Y S
Sbjct: 220 HEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSS 279
Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
G+ +E + ++ + G +PD + +S+L ++G R + M G++P + Y
Sbjct: 280 GQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTY 339
Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
TLL+ G L D MV +G+ PD + LI Y K A+ ++ +MR+
Sbjct: 340 GTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQ 399
Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
+ + Y ++ + G VE+A FE M + + P N Y ++++ + +
Sbjct: 400 QGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQM-IDEGLSPGNIVYNSLIHGLCTCNKWE 458
Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
A EL EM + G+ +N + +I K R+ + ++F + + GVKP+
Sbjct: 459 RAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPN 510
Score = 123 bits (308), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 94/369 (25%), Positives = 170/369 (46%), Gaps = 37/369 (10%)
Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
K+Y ++ + + + P + + YN + +L + ++ N MV N + D +TY++I
Sbjct: 214 KAYSTYHEMLDRGILP-DVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSI 272
Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
+ EAI + ++M G+ PD VTYS ++D K+G+ E +++ G
Sbjct: 273 LHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGL 332
Query: 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348
KP+ + L + + G + +L M G+ P+ V++ L+ A K GK A
Sbjct: 333 KPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAML 392
Query: 349 LFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE------------------ 390
+F +M + GL P+ T A+I I K+ +DA+ +E+M +
Sbjct: 393 VFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLC 452
Query: 391 --NKWP---------------MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDN 433
NKW ++ I +N++++ G V E+E+LFE M + KP+
Sbjct: 453 TCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELM-VRIGVKPNV 511
Query: 434 YSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGV 493
+Y ++N Y G +D A++L M +G+ N + + LI K R++D + +F
Sbjct: 512 ITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKE 571
Query: 494 SIDRGVKPD 502
GV PD
Sbjct: 572 MESSGVSPD 580
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/319 (25%), Positives = 149/319 (46%), Gaps = 2/319 (0%)
Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
F+ + + L P E Y ++ + L + MV N I D+ +S +I
Sbjct: 323 IFDSMTKRGLKP-EITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAY 381
Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
+ D+A+ F +M + GL P+ VTY A++ + KSG+VE+ + +E+ + G P
Sbjct: 382 AKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGN 441
Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
I ++ L ++ ++ EM G+ N + +N+++++ K G+ + LF+
Sbjct: 442 IVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFEL 501
Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
MV G+ P+ T LI Y A +A++L M + + Y+TL+N I
Sbjct: 502 MVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISR 561
Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
+E+A LF++M+ S PD +Y +L A EL+ ++E G I +
Sbjct: 562 MEDALVLFKEME-SSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYN 620
Query: 473 CLIQCLGKARRIDDLVRVF 491
++ L K + DD +++F
Sbjct: 621 IILHGLCKNKLTDDALQMF 639
Score = 105 bits (263), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/302 (27%), Positives = 146/302 (48%), Gaps = 8/302 (2%)
Query: 169 KSYFFFNWIKSQNLFPMETIF---YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITY 225
++ F+ ++ Q L P + + KS R EQ+ +E +S NI Y
Sbjct: 389 QAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSP----GNIVY 444
Query: 226 STIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVA 285
+++I CN ++ A E M G+ + + +++I+D + K G+V E L+E V
Sbjct: 445 NSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVR 504
Query: 286 SGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGL 345
G KP+ I ++ L + +G D +L M S+G++PN V Y+TL+ K +
Sbjct: 505 IGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMED 564
Query: 346 ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405
A LF EM SG++PD T +++ + R A EL+ R+ E+ ++ YN +L+
Sbjct: 565 ALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILH 624
Query: 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
L ++A ++F+++ L D K + ++ M++ G D A +LF S G+
Sbjct: 625 GLCKNKLTDDALQMFQNLCLMDL-KLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLV 683
Query: 466 IN 467
N
Sbjct: 684 PN 685
Score = 105 bits (262), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 83/341 (24%), Positives = 155/341 (45%), Gaps = 41/341 (12%)
Query: 190 YNVTMKSL----RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
YN+ +K L R +L+ +A++ D ++Y+T+I + D+A +
Sbjct: 161 YNILLKGLCDENRSQEALELLHMMADDRGGGSPP-DVVSYTTVINGFFKEGDSDKAYSTY 219
Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
M G++PD VTY++I+ K+ +++ + + V +G PD + ++ + + S
Sbjct: 220 HEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSS 279
Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
G L++M+S GV+P++V Y+ L++ + K G+ AR +FD M + GL P+ T
Sbjct: 280 GQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITT- 338
Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
Y TLL A G + E L D+ +
Sbjct: 339 ----------------------------------YGTLLQGYATKGALVEMHGLL-DLMV 363
Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
+ PD+Y ++ ++ Y G VD A+ +F +M + G+ N + +I L K+ R++
Sbjct: 364 RNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVE 423
Query: 486 DLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526
D + F ID G+ P + + L+ + C E ++I
Sbjct: 424 DAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELI 464
Score = 83.6 bits (205), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 125/277 (45%), Gaps = 8/277 (2%)
Query: 241 AIEWFERMYKTG---LMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS- 296
A+ + RM + G + PD TY ++ ++G+++ + + G++ D IAF+
Sbjct: 68 AVSRYNRMARAGADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTP 127
Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVE- 355
+L + + D + VL+ M LG PN+ YN LL+ + + A L M +
Sbjct: 128 LLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADD 187
Query: 356 --SGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
G PD + T +I + K + A + M + D + YN+++ +
Sbjct: 188 RGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAM 247
Query: 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTC 473
++A + M + + PD +Y ++L+ Y S G AI ++M GV +V+ +
Sbjct: 248 DKAMEVLNTM-VKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSL 306
Query: 474 LIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
L+ L K R + ++F RG+KP+ G LL
Sbjct: 307 LMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLL 343
Score = 38.5 bits (88), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 69/162 (42%)
Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
L EM S+ + D ITY+ I+ + A E + R+ ++G + TY+ IL
Sbjct: 568 LFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLC 627
Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
K+ ++ L +++ K + F+++ + G D + + S G+ PN
Sbjct: 628 KNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYW 687
Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK 370
Y + E + G LF M ++G T D L +++
Sbjct: 688 TYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVR 729
Score = 37.7 bits (86), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 34/189 (17%), Positives = 86/189 (45%), Gaps = 4/189 (2%)
Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
+ + F ++S + P + I YN+ ++ L R+ ++L + + +++ TY+
Sbjct: 562 MEDALVLFKEMESSGVSP-DIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYN 620
Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
I+ + L D+A++ F+ + L + T++ ++D K G+ +E L+ ++
Sbjct: 621 IILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSN 680
Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM---GKAGKP 343
G P+ + ++ + G + + + M+ G + + N ++ + G+ +
Sbjct: 681 GLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRA 740
Query: 344 GLARSLFDE 352
G S+ DE
Sbjct: 741 GTYLSMIDE 749
>sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110
OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1
Length = 729
Score = 127 bits (320), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/313 (26%), Positives = 157/313 (50%), Gaps = 1/313 (0%)
Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
YN + L +++ +++ EM+ + + D+ TY +++ A + E + F M
Sbjct: 308 YNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMR 367
Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
++PD V +S+++ ++ +SG +++ L + +G PD + +++L + + G
Sbjct: 368 SRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMIS 427
Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
+ EM G ++V YNT+L + K G A LF+EM E L PD TLT LI
Sbjct: 428 VAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILI 487
Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
+ K ++A+EL+++M+E + +D + YNTLL+ +G ++ A+ ++ DM +S
Sbjct: 488 DGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADM-VSKEI 546
Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
P SY+ ++N S G++ A +++EM + VM C +I+ ++ D
Sbjct: 547 LPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGES 606
Query: 490 VFGVSIDRGVKPD 502
I G PD
Sbjct: 607 FLEKMISEGFVPD 619
Score = 125 bits (314), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 96/393 (24%), Positives = 174/393 (44%), Gaps = 16/393 (4%)
Query: 122 RDLKLFARKLNDCDNTEEAF--LRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKS 179
R L + A K D TE+ F +R+ +P + + + K+ +FN +K
Sbjct: 344 RSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKE 403
Query: 180 QNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFD 239
L P + + Y + ++ + L NEM+ +D +TY+TI+ + +
Sbjct: 404 AGLIP-DNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLG 462
Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
EA + F M + L PD T + ++D + K G ++ + L+++ + D + ++ L
Sbjct: 463 EADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLL 522
Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
FG+ GD D + + +M S + P + Y+ L+ A+ G A ++DEM+ +
Sbjct: 523 DGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIK 582
Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL-------NMCADIGL 412
P ++IK Y ++ A D E+M + D I YNTL+ NM GL
Sbjct: 583 PTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGL 642
Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472
V++ E E L PD ++Y ++L+ + + A + +M E GV + T
Sbjct: 643 VKKMEE--EQGGLV----PDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYT 696
Query: 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRL 505
C+I + + R+ + RG PDD+
Sbjct: 697 CMINGFVSQDNLTEAFRIHDEMLQRGFSPDDKF 729
Score = 125 bits (314), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 137/281 (48%), Gaps = 1/281 (0%)
Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
D +TY+T+I+ L +EA E M G P TY+ +++ K GK E ++
Sbjct: 269 DIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVF 328
Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
+ SG PD + L + GD V +M+S V P+LV +++++ ++
Sbjct: 329 AEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRS 388
Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
G A F+ + E+GL PD T LI+ Y + A+ L M + MD + Y
Sbjct: 389 GNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTY 448
Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
NT+L+ ++ EA++LF +M PD+Y+ T +++ + GN+ NA+ELF++M
Sbjct: 449 NTILHGLCKRKMLGEADKLFNEMT-ERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMK 507
Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
E + ++V+ L+ GK ID ++ + + + P
Sbjct: 508 EKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILP 548
Score = 93.2 bits (230), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 126/258 (48%), Gaps = 1/258 (0%)
Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
++ + ++G+ + T + +++ K GK+E+V + + G PD + ++ L +
Sbjct: 223 YQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSS 282
Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
G + ++ M G P + YNT++ + K GK A+ +F EM+ SGL+PD T
Sbjct: 283 KGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTT 342
Query: 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
+L+ K + +++ MR D + +++++++ G +++A F +K
Sbjct: 343 YRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVK 402
Query: 425 LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484
+ PDN YT ++ Y G + A+ L EM + G A++V+ ++ L K + +
Sbjct: 403 EAGLI-PDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKML 461
Query: 485 DDLVRVFGVSIDRGVKPD 502
+ ++F +R + PD
Sbjct: 462 GEADKLFNEMTERALFPD 479
Score = 80.1 bits (196), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 68/274 (24%), Positives = 117/274 (42%), Gaps = 14/274 (5%)
Query: 216 NEIELDNITYSTIITCAKRCNLFD-------------EAIEWFERMYKTGLMPDEVTYSA 262
+ +E+ N ST C ++FD EA E F + G +A
Sbjct: 146 SRLEIVNSLDSTFSNCGSNDSVFDLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNA 205
Query: 263 ILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG 322
++ + G VE +Y+ SG + +++ + G + + L +++ G
Sbjct: 206 LIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKG 265
Query: 323 VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382
V P++V YNTL+ A G A L + M G +P T +I K + A
Sbjct: 266 VYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAK 325
Query: 383 ELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNI 442
E++ M + D Y +LL G V E E++F DM+ D PD +++M+++
Sbjct: 326 EVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVV-PDLVCFSSMMSL 384
Query: 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
+ GN+D A+ F + E G+ + + T LIQ
Sbjct: 385 FTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQ 418
>sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920
OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1
Length = 871
Score = 127 bits (318), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 80/293 (27%), Positives = 147/293 (50%), Gaps = 4/293 (1%)
Query: 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
DEA FE M PDE+T+ +++D K G+V++ +YE+ + S + + I ++
Sbjct: 428 LDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTS 487
Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
L K F G + + ++M + P+L + NT ++ M KAG+P R++F+E+
Sbjct: 488 LIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARR 547
Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417
PD ++ + LI KA +A + EL+ M+E +D YN +++ G V +A
Sbjct: 548 FVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAY 607
Query: 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
+L E+MK + +P +Y ++++ +D A LFEE + +NV+ + LI
Sbjct: 608 QLLEEMKTKGF-EPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDG 666
Query: 478 LGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQ 530
GK RID+ + + +G+ P+ LL + +E++ + + C Q
Sbjct: 667 FGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALV---KAEEINEALVCFQ 716
Score = 125 bits (315), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 97/417 (23%), Positives = 186/417 (44%), Gaps = 48/417 (11%)
Query: 145 ITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQ 204
++ + +P E + +L LK ++ +F W + + P YN + + R F
Sbjct: 56 LSALSFKPQPEFVIGVLRRLKDVNRAIEYFRWYERRTELPHCPESYNSLLLVMARCRNFD 115
Query: 205 LIEQLANEM-VSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAI 263
++Q+ EM V+ N ++ C K N E + + M K P Y+ +
Sbjct: 116 ALDQILGEMSVAGFGPSVNTCIEMVLGCVK-ANKLREGYDVVQMMRKFKFRPAFSAYTTL 174
Query: 264 LDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGV 323
+ ++ + +L+L+++ G++P F+ L + F + G D +L EMKS +
Sbjct: 175 IGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSL 234
Query: 324 QPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALE 383
++V+YN +++ GK GK +A F E+ +GL PDE T T++I + KA +A+E
Sbjct: 235 DADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVE 294
Query: 384 LWERMREN-KWPMDF----------------------------------ILYNTLLNMCA 408
++E + +N + P + I YN +L
Sbjct: 295 MFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLR 354
Query: 409 DIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINV 468
+G V+EA ++FE+MK P+ +Y ++++ G +D A EL + M + G+ NV
Sbjct: 355 KMGKVDEALKVFEEMKKD--AAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNV 412
Query: 469 MGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKV 525
++ L K++++D+ +F + PD+ ++ C + +GKV
Sbjct: 413 RTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDE---------ITFCSLIDGLGKV 460
Score = 116 bits (291), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 87/313 (27%), Positives = 142/313 (45%), Gaps = 2/313 (0%)
Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
+K F IK++ P + Y++ + L +L M LD Y+
Sbjct: 534 EKGRAMFEEIKARRFVP-DARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNI 592
Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
+I +C ++A + E M G P VTY +++D AK +++E L+E +
Sbjct: 593 VIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKR 652
Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
+ + + +S L FG+ G D +L+E+ G+ PNL +N+LL+A+ KA + A
Sbjct: 653 IELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEAL 712
Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
F M E TP++ T LI K R A W+ M++ I Y T+++
Sbjct: 713 VCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGL 772
Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
A G + EA LF+ K ++ PD+ Y AM+ +G +A LFEE G+ I+
Sbjct: 773 AKAGNIAEAGALFDRFK-ANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGLPIH 831
Query: 468 VMGCTCLIQCLGK 480
C L+ L K
Sbjct: 832 NKTCVVLLDTLHK 844
Score = 105 bits (263), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/311 (24%), Positives = 141/311 (45%), Gaps = 1/311 (0%)
Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
D +YS +I + +E E F M + G + D Y+ ++D + K GKV + L
Sbjct: 551 DARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLL 610
Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
E G++P + + + + D + +E KS ++ N+V+Y++L++ GK
Sbjct: 611 EEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKV 670
Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
G+ A + +E+++ GLTP+ T +L+ KA +AL ++ M+E K + + Y
Sbjct: 671 GRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTY 730
Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
L+N + +A +++M+ KP SYT M++ GN+ A LF+
Sbjct: 731 GILINGLCKVRKFNKAFVFWQEMQKQGM-KPSTISYTTMISGLAKAGNIAEAGALFDRFK 789
Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSE 520
G + +I+ L R D +F + RG+ ++ C LL + + E
Sbjct: 790 ANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGLPIHNKTCVVLLDTLHKNDCLE 849
Query: 521 DVGKVITCLQQ 531
V L++
Sbjct: 850 QAAIVGAVLRE 860
Score = 57.4 bits (137), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/224 (20%), Positives = 98/224 (43%), Gaps = 5/224 (2%)
Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ--LANEMVSNEIELDNITYS 226
++Y F KS+ + + + Y+ + FG+ ++ E + E++ + + T++
Sbjct: 640 EAYMLFEEAKSKRI-ELNVVIYSSLIDG--FGKVGRIDEAYLILEELMQKGLTPNLYTWN 696
Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
+++ + +EA+ F+ M + P++VTY +++ K K + ++
Sbjct: 697 SLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQ 756
Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
G KP I+++ + ++G+ + K+ G P+ YN ++E + + A
Sbjct: 757 GMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDA 816
Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
SLF+E GL KT L+ K + A + +RE
Sbjct: 817 FSLFEETRRRGLPIHNKTCVVLLDTLHKNDCLEQAAIVGAVLRE 860
>sp|Q9FLJ4|PP440_ARATH Pentatricopeptide repeat-containing protein At5g61400
OS=Arabidopsis thaliana GN=At5g61400 PE=2 SV=1
Length = 654
Score = 125 bits (314), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 99/368 (26%), Positives = 178/368 (48%), Gaps = 7/368 (1%)
Query: 147 EIPHQPTRENALLILNSL---KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQF 203
E+ P + L ILN L + + + + + S+ L P I++ + + G +
Sbjct: 157 EMKCSPDSKACLSILNGLVRRRRFDSVWVDYQLMISRGLVPDVHIYFVLFQCCFKQGL-Y 215
Query: 204 QLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAI 263
E+L +EM S I+ + Y+ I R N +EA + FE M K G++P+ TYSA+
Sbjct: 216 SKKEKLLDEMTSLGIKPNVYIYTIYILDLCRDNKMEEAEKMFELMKKHGVLPNLYTYSAM 275
Query: 264 LDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGV 323
+D Y K+G V + LY+ + + P+ + F L F ++ + R + M GV
Sbjct: 276 IDGYCKTGNVRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVTARSLFVHMVKFGV 335
Query: 324 QPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALE 383
PNL VYN L+ K+G A L EM L+PD T T LI +A
Sbjct: 336 DPNLYVYNCLIHGHCKSGNMLEAVGLLSEMESLNLSPDVFTYTILINGLCIEDQVAEANR 395
Query: 384 LWERMRENKWPMDFILYNTLLN-MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNI 442
L+++M+ + YN+L++ C + + E+A L +M S +P+ +++ +++
Sbjct: 396 LFQKMKNERIFPSSATYNSLIHGYCKEYNM-EQALDLCSEMTASGV-EPNIITFSTLIDG 453
Query: 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
Y + ++ A+ L+ EM+ G+ +V+ T LI K + + +R++ ++ G+ P+
Sbjct: 454 YCNVRDIKAAMGLYFEMTIKGIVPDVVTYTALIDAHFKEANMKEALRLYSDMLEAGIHPN 513
Query: 503 DRLCGCLL 510
D CL+
Sbjct: 514 DHTFACLV 521
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 120/261 (45%), Gaps = 1/261 (0%)
Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
L +EM S + D TY+ +I + EA F++M + P TY++++ Y
Sbjct: 361 LLSEMESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKMKNERIFPSSATYNSLIHGYC 420
Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
K +E+ L L ASG +P+ I FS L + D + EM G+ P++V
Sbjct: 421 KEYNMEQALDLCSEMTASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVV 480
Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
Y L++A K A L+ +M+E+G+ P++ T L+ + K A++ ++
Sbjct: 481 TYTALIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSVAIDFYQEN 540
Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
+ + + + + L+ G + A R F DM+ S PD SY +ML +
Sbjct: 541 NQQRSCWNHVGFTCLIEGLCQNGYILRASRFFSDMR-SCGITPDICSYVSMLKGHLQEKR 599
Query: 449 VDNAIELFEEMSELGVAINVM 469
+ + + L +M + G+ N++
Sbjct: 600 ITDTMMLQCDMIKTGILPNLL 620
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 125 bits (314), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 99/373 (26%), Positives = 168/373 (45%), Gaps = 11/373 (2%)
Query: 145 ITEIPHQPTRENALLILNSLKFWQK---SYFFFNWIKSQNLFPMETIF---YNVTMKSLR 198
+ E+ H+PT ++N L K + + + P E + NV KS
Sbjct: 184 MVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKS-- 241
Query: 199 FGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEV 258
Q L +L +M I+LD + YS II + D A F M G D +
Sbjct: 242 --GQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADII 299
Query: 259 TYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEM 318
TY+ ++ + +G+ ++ L + P+ + FSVL F + G +L+EM
Sbjct: 300 TYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEM 359
Query: 319 KSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWA 378
G+ PN + YN+L++ K + A + D M+ G PD T LI Y KA
Sbjct: 360 MQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRI 419
Query: 379 KDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTA 438
D LEL+ M + + YNTL+ G +E A++LF++M +S +PD SY
Sbjct: 420 DDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEM-VSRRVRPDIVSYKI 478
Query: 439 MLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRG 498
+L+ G ++ A+E+F ++ + + +++ +I + A ++DD +F +G
Sbjct: 479 LLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKG 538
Query: 499 VKPDDRLCGCLLS 511
VK D R ++S
Sbjct: 539 VKLDARAYNIMIS 551
Score = 120 bits (302), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 86/332 (25%), Positives = 150/332 (45%), Gaps = 5/332 (1%)
Query: 172 FFFNWIKSQNLFPMETIF-YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIIT 230
F + I+S+ P+ T+ +N ++ +Q++L+ L +M S I T S +I
Sbjct: 75 LFRDMIQSR---PLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMIN 131
Query: 231 CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
C RC A ++ K G PD V ++ +L+ +V E L L +R V G KP
Sbjct: 132 CFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKP 191
Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
I + L +G ++ M G QPN V Y +L M K+G+ LA L
Sbjct: 192 TLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELL 251
Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
+M E + D + +I K +A L+ M + D I YNTL+ +
Sbjct: 252 RKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNA 311
Query: 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG 470
G ++ +L DM + P+ +++ +++ + G + A +L +EM + G+A N +
Sbjct: 312 GRWDDGAKLLRDM-IKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTIT 370
Query: 471 CTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
LI K R+++ +++ + I +G PD
Sbjct: 371 YNSLIDGFCKENRLEEAIQMVDLMISKGCDPD 402
Score = 90.9 bits (224), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/262 (24%), Positives = 125/262 (47%), Gaps = 1/262 (0%)
Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
+QL EM+ I + ITY+++I + N +EAI+ + M G PD +T++ +++
Sbjct: 353 DQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILING 412
Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
Y K+ ++++ L L+ G + + ++ L + F +SG + + + QEM S V+P+
Sbjct: 413 YCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPD 472
Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
+V Y LL+ + G+ A +F ++ +S + D +I A DA +L+
Sbjct: 473 IVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFC 532
Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
+ +D YN +++ + +A+ LF M + PD +Y ++ +
Sbjct: 533 SLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGH-APDELTYNILIRAHLGD 591
Query: 447 GNVDNAIELFEEMSELGVAINV 468
+ A EL EEM G +V
Sbjct: 592 DDATTAAELIEEMKSSGFPADV 613
Score = 39.3 bits (90), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/196 (20%), Positives = 81/196 (41%), Gaps = 38/196 (19%)
Query: 325 PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384
P ++ +N L A+ K + L +L +M G+ TL+ +I + + R A
Sbjct: 86 PTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFST 145
Query: 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYG 444
++ + + D +++NTLLN GL E C+
Sbjct: 146 MGKIMKLGYEPDTVIFNTLLN-----GLCLE-------------CR-------------- 173
Query: 445 SGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR 504
V A+EL + M E+G ++ L+ L ++ D V + ++ G +P++
Sbjct: 174 ----VSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEV 229
Query: 505 LCGCLLSVVSLCETSE 520
G +L+V +C++ +
Sbjct: 230 TYGPVLNV--MCKSGQ 243
>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680,
mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2
SV=2
Length = 548
Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 85/342 (24%), Positives = 167/342 (48%), Gaps = 3/342 (0%)
Query: 161 LNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIEL 220
L +K F + +KS+ FP + +N + ++ +++ ++ L +M I
Sbjct: 61 LRDIKLNDAIDLFSDMVKSRP-FP-SIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRN 118
Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
D T++ +I C C A+ +M K G PD VT ++++ + + +V + +SL
Sbjct: 119 DLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLV 178
Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
++ V G+KPD +A++ + ++ + +E++ G++PN+V Y L+ + +
Sbjct: 179 DKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNS 238
Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
+ A L +M++ +TP+ T +AL+ + K +A EL+E M D + Y
Sbjct: 239 SRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTY 298
Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
++L+N ++EA ++F D+ +S C D SY ++N + V++ ++LF EMS
Sbjct: 299 SSLINGLCLHDRIDEANQMF-DLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMS 357
Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
+ G+ N + LIQ +A +D F G+ PD
Sbjct: 358 QRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPD 399
Score = 110 bits (275), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 69/294 (23%), Positives = 146/294 (49%), Gaps = 1/294 (0%)
Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
L ++MV + D + Y+ II + ++A ++F+ + + G+ P+ VTY+A+++
Sbjct: 177 LVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLC 236
Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
S + + L + P+ I +S L F ++G + + +EM + + P++V
Sbjct: 237 NSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIV 296
Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
Y++L+ + + A +FD MV G D + LI + KA+ +D ++L+ M
Sbjct: 297 TYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREM 356
Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
+ + + YNTL+ G V++A+ F M PD ++Y +L G
Sbjct: 357 SQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGI-SPDIWTYNILLGGLCDNGE 415
Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
++ A+ +FE+M + + ++++ T +I+ + K ++++ +F +G+KPD
Sbjct: 416 LEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPD 469
Score = 109 bits (272), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 83/326 (25%), Positives = 157/326 (48%), Gaps = 5/326 (1%)
Query: 145 ITEIPHQPTRENALLILNSL---KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGR 201
+ EI ++P I++SL K ++ FF I+ + + P + Y + L
Sbjct: 181 MVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRP-NVVTYTALVNGLCNSS 239
Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS 261
++ +L ++M+ +I + ITYS ++ + EA E FE M + + PD VTYS
Sbjct: 240 RWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYS 299
Query: 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
++++ +++E +++ V+ G D ++++ L F ++ + + +EM
Sbjct: 300 SLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQR 359
Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
G+ N V YNTL++ +AG A+ F +M G++PD T L+ + A
Sbjct: 360 GLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKA 419
Query: 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
L ++E M++ + +D + Y T++ G VEEA LF + L KPD +YT M++
Sbjct: 420 LVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGL-KPDIVTYTTMMS 478
Query: 442 IYGSGGNVDNAIELFEEMSELGVAIN 467
+ G + L+ +M + G+ N
Sbjct: 479 GLCTKGLLHEVEALYTKMKQEGLMKN 504
Score = 95.1 bits (235), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 123/259 (47%), Gaps = 9/259 (3%)
Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
++L EMV I+ D +TYS++I + DEA + F+ M G + D V+Y+ +++
Sbjct: 280 KELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLING 339
Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
+ K+ +VE+ + L+ G + + ++ L + F ++GD D + +M G+ P+
Sbjct: 340 FCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPD 399
Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
+ YN LL + G+ A +F++M + + D T T +I+ K ++A L+
Sbjct: 400 IWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFC 459
Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
+ D + Y T+++ GL+ E E L+ MK K D S
Sbjct: 460 SLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKND---------CTLSD 510
Query: 447 GNVDNAIELFEEMSELGVA 465
G++ + EL ++M G A
Sbjct: 511 GDITLSAELIKKMLSCGYA 529
>sp|Q9SAK0|PP132_ARATH Pentatricopeptide repeat-containing protein At1g79490,
mitochondrial OS=Arabidopsis thaliana GN=EMB2217 PE=2
SV=1
Length = 836
Score = 124 bits (312), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 121/511 (23%), Positives = 218/511 (42%), Gaps = 34/511 (6%)
Query: 189 FYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERM 248
+ N+ M L G ++ E + M + LD TY II + D A + F++M
Sbjct: 281 YNNLMMLFLNKGLPYKAFE-IYESMEKTDSLLDGSTYELIIPSLAKSGRLDAAFKLFQQM 339
Query: 249 YKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY 308
+ L P +S+++D K+G+++ + +Y G +P F L + ++G
Sbjct: 340 KERKLRPSFSVFSSLVDSMGKAGRLDTSMKVYMEMQGFGHRPSATMFVSLIDSYAKAGKL 399
Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
D + EMK G +PN +Y ++E+ K+GK +A ++F +M ++G P T + L
Sbjct: 400 DTALRLWDEMKKSGFRPNFGLYTMIIESHAKSGKLEVAMTVFKDMEKAGFLPTPSTYSCL 459
Query: 369 IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428
++++ + A++++ M Y +LL + A+ LV+ A ++ +MK Y
Sbjct: 460 LEMHAGSGQVDSAMKIYNSMTNAGLRPGLSSYISLLTLLANKRLVDVAGKILLEMKAMGY 519
Query: 429 ----CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484
C D +L IY +VD A++ M G+ N L + K
Sbjct: 520 SVDVCASD------VLMIYIKDASVDLALKWLRFMGSSGIKTNNFIIRQLFESCMKNGLY 573
Query: 485 DDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIE 544
D + + K D L +L+ + C+ + ++++ L K AF+ +
Sbjct: 574 DSARPLLETLVHSAGKVDLVLYTSILAHLVRCQDEDKERQLMSILSATKHKAHAFMCGL- 632
Query: 545 DNSTGFEN--------IKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLG 596
TG E ++E ++ + + E A R F N L++ RA + +
Sbjct: 633 --FTGPEQRKQPVLTFVREFYQGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVA 690
Query: 597 TLYGLYPGLHNKTLDE---WSLDVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQLFLAE 653
L+P D+ WSLDVR+LSVGAA A+ + K +L V+P+
Sbjct: 691 YENKLFP--KAIVFDQHIAWSLDVRNLSVGAALIAVVHTLHRFRKRMLYYGVVPRRIKLV 748
Query: 654 TGTGTHKFSQGLATAFASHVNKLAAPFRQSE 684
TG L A ++ + +PF S+
Sbjct: 749 TGP-------TLKIVIAQMLSSVESPFEVSK 772
Score = 120 bits (301), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 101/435 (23%), Positives = 195/435 (44%), Gaps = 34/435 (7%)
Query: 156 NALLILNSLKFWQK---SYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANE 212
N + I SLK ++ + F W K Q + Y V L GR F I+ L E
Sbjct: 171 NMVHITQSLKIVKEVDAALSLFRWAKKQPWYLPSDECYVVLFDGLNQGRDFVGIQSLFEE 230
Query: 213 MV---SNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAK 269
MV S+ +L Y+ +I + + A F++ ++G D TY+ ++ ++
Sbjct: 231 MVQDSSSHGDLSFNAYNQVIQYLAKAEKLEVAFCCFKKAQESGCKIDTQTYNNLMMLFLN 290
Query: 270 SGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVV 329
G + +YE + D + ++ +SG D + Q+MK ++P+ V
Sbjct: 291 KGLPYKAFEIYESMEKTDSLLDGSTYELIIPSLAKSGRLDAAFKLFQQMKERKLRPSFSV 350
Query: 330 YNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMR 389
+++L+++MGKAG+ + ++ EM G P +LI Y KA AL LW+ M+
Sbjct: 351 FSSLVDSMGKAGRLDTSMKVYMEMQGFGHRPSATMFVSLIDSYAKAGKLDTALRLWDEMK 410
Query: 390 ENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNV 449
++ + +F LY ++ A G +E A +F+DM+ + + P +Y+ +L ++ G V
Sbjct: 411 KSGFRPNFGLYTMIIESHAKSGKLEVAMTVFKDMEKAGFL-PTPSTYSCLLEMHAGSGQV 469
Query: 450 DNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL------VRVFGVSIDRGVKPDD 503
D+A++++ M+ G+ + L+ L R +D ++ G S+D
Sbjct: 470 DSAMKIYNSMTNAGLRPGLSSYISLLTLLANKRLVDVAGKILLEMKAMGYSVD------- 522
Query: 504 RLCGCLLSVVSLCETSEDVG-KVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIK 562
+C + ++ + + S D+ K + + + K F+ I++ F + +K
Sbjct: 523 -VCASDVLMIYIKDASVDLALKWLRFMGSSGIKTNNFI------------IRQLFESCMK 569
Query: 563 DTEVDARRPFCNCLI 577
+ D+ RP L+
Sbjct: 570 NGLYDSARPLLETLV 584
>sp|Q9C9U0|PP118_ARATH Pentatricopeptide repeat-containing protein At1g73710
OS=Arabidopsis thaliana GN=At1g73710 PE=2 SV=1
Length = 991
Score = 124 bits (311), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 74/271 (27%), Positives = 136/271 (50%), Gaps = 2/271 (0%)
Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
D + Y+ +I + L ++A+ F+ M G PDE TY+++ + A V+E +
Sbjct: 514 DVLEYNVMIKAYGKAKLHEKALSLFKGMKNQGTWPDECTYNSLFQMLAGVDLVDEAQRIL 573
Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
+ SG KP ++ + + G + + M+ GV+PN VVY +L+ ++
Sbjct: 574 AEMLDSGCKPGCKTYAAMIASYVRLGLLSDAVDLYEAMEKTGVKPNEVVYGSLINGFAES 633
Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
G A F M E G+ + LT+LIK Y K ++A ++++M++++ D
Sbjct: 634 GMVEEAIQYFRMMEEHGVQSNHIVLTSLIKAYSKVGCLEEARRVYDKMKDSEGGPDVAAS 693
Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
N++L++CAD+G+V EAE +F ++ C D S+ M+ +Y G +D AIE+ EEM
Sbjct: 694 NSMLSLCADLGIVSEAESIFNALREKGTC--DVISFATMMYLYKGMGMLDEAIEVAEEMR 751
Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
E G+ + ++ C ++ + +F
Sbjct: 752 ESGLLSDCTSFNQVMACYAADGQLSECCELF 782
Score = 111 bits (278), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 94/357 (26%), Positives = 173/357 (48%), Gaps = 27/357 (7%)
Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
P++T+ +N + + E L +M I D TY+ +++ + A+E
Sbjct: 337 PIDTVTFNTMIHTCGTHGHLSEAESLLKKMEEKGISPDTKTYNILLSLHADAGDIEAALE 396
Query: 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303
++ ++ K GL PD VT+ A+L + + V EV ++ + + D + V+ +M+
Sbjct: 397 YYRKIRKVGLFPDTVTHRAVLHILCQRKMVAEVEAVIAEMDRNSIRIDEHSVPVIMQMYV 456
Query: 304 ESGDYDGIRYVLQEMKSL--GVQPNLVVYNTLLEAMGKA-GKPGL---ARSLF-DEMVES 356
G ++ + K+L Q + V+ +T L A+ + GL A ++F + S
Sbjct: 457 NEG-------LVVQAKALFERFQLDCVLSSTTLAAVIDVYAEKGLWVEAETVFYGKRNMS 509
Query: 357 GLTPDEKTLTALIKIYGKARWAKDALELWERMR-ENKWPMDFILYNTLLNMCADIGLVEE 415
G D +IK YGKA+ + AL L++ M+ + WP D YN+L M A + LV+E
Sbjct: 510 GQRNDVLEYNVMIKAYGKAKLHEKALSLFKGMKNQGTWP-DECTYNSLFQMLAGVDLVDE 568
Query: 416 AERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLI 475
A+R+ +M L CKP +Y AM+ Y G + +A++L+E M + GV N + LI
Sbjct: 569 AQRILAEM-LDSGCKPGCKTYAAMIASYVRLGLLSDAVDLYEAMEKTGVKPNEVVYGSLI 627
Query: 476 QCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQA 532
++ +++ ++ F + + GV+ + + + SL + VG CL++A
Sbjct: 628 NGFAESGMVEEAIQYFRMMEEHGVQSNH------IVLTSLIKAYSKVG----CLEEA 674
Score = 96.7 bits (239), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 72/289 (24%), Positives = 133/289 (46%), Gaps = 2/289 (0%)
Query: 165 KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNIT 224
K +K+ F +K+Q +P E YN + L +++ EM+ + + T
Sbjct: 529 KLHEKALSLFKGMKNQGTWPDECT-YNSLFQMLAGVDLVDEAQRILAEMLDSGCKPGCKT 587
Query: 225 YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
Y+ +I R L +A++ +E M KTG+ P+EV Y ++++ +A+SG VEE + +
Sbjct: 588 YAAMIASYVRLGLLSDAVDLYEAMEKTGVKPNEVVYGSLINGFAESGMVEEAIQYFRMME 647
Query: 285 ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344
G + + I + L K + + G + R V +MK P++ N++L G
Sbjct: 648 EHGVQSNHIVLTSLIKAYSKVGCLEEARRVYDKMKDSEGGPDVAASNSMLSLCADLGIVS 707
Query: 345 LARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
A S+F+ + E G T D + ++ +Y +A+E+ E MRE+ D +N ++
Sbjct: 708 EAESIFNALREKG-TCDVISFATMMYLYKGMGMLDEAIEVAEEMRESGLLSDCTSFNQVM 766
Query: 405 NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAI 453
A G + E LF +M + D ++ + + GG A+
Sbjct: 767 ACYAADGQLSECCELFHEMLVERKLLLDWGTFKTLFTLLKKGGVPSEAV 815
Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 80/327 (24%), Positives = 146/327 (44%), Gaps = 39/327 (11%)
Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
++ I+ LFP +T+ + + L + +E + EM N I +D + I+
Sbjct: 397 YYRKIRKVGLFP-DTVTHRAVLHILCQRKMVAEVEAVIAEMDRNSIRIDEHSVPVIMQMY 455
Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK-VEEVLSLYERGVASGWKPD 291
L +A FER ++ + T +A++DVYA+ G VE Y + SG + D
Sbjct: 456 VNEGLVVQAKALFER-FQLDCVLSSTTLAAVIDVYAEKGLWVEAETVFYGKRNMSGQRND 514
Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
+ ++V+ K +G++ ++ + + MK+ G P+ YN+L + + A+ +
Sbjct: 515 VLEYNVMIKAYGKAKLHEKALSLFKGMKNQGTWPDECTYNSLFQMLAGVDLVDEAQRILA 574
Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411
EM++SG P KT A+I Y + DA++L+E M + + ++Y +L+N A+ G
Sbjct: 575 EMLDSGCKPGCKTYAAMIASYVRLGLLSDAVDLYEAMEKTGVKPNEVVYGSLINGFAESG 634
Query: 412 LVEEA-----------------------------------ERLFEDMKLSDYCKPDNYSY 436
+VEEA R+++ MK S+ PD +
Sbjct: 635 MVEEAIQYFRMMEEHGVQSNHIVLTSLIKAYSKVGCLEEARRVYDKMKDSE-GGPDVAAS 693
Query: 437 TAMLNIYGSGGNVDNAIELFEEMSELG 463
+ML++ G V A +F + E G
Sbjct: 694 NSMLSLCADLGIVSEAESIFNALREKG 720
Score = 93.6 bits (231), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 76/346 (21%), Positives = 141/346 (40%), Gaps = 56/346 (16%)
Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
W++ F + +S + I YN+ +++L ++ + EM N + N TY
Sbjct: 125 WERVLRVFRFFQSHQSYVPNVIHYNIVLRALGRAGKWDELRLCWIEMAHNGVLPTNNTYG 184
Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV---------- 276
++ + L EA+ W + M + PDEVT + ++ V+ SG+ +
Sbjct: 185 MLVDVYGKAGLVKEALLWIKHMGQRMHFPDEVTMATVVRVFKNSGEFDRADRFFKGWCAG 244
Query: 277 -----------------------------LSLYERGV----------ASGWKPDP----- 292
+ L++ G ASG P
Sbjct: 245 KVDLDLDSIDDFPKNGSAQSPVNLKQFLSMELFKVGARNPIEKSLHFASGSDSSPRKPRL 304
Query: 293 -IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
F+ L ++G++G + + EM GV + V +NT++ G G A SL
Sbjct: 305 TSTFNTLIDLYGKAGRLNDAANLFSEMLKSGVPIDTVTFNTMIHTCGTHGHLSEAESLLK 364
Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411
+M E G++PD KT L+ ++ A + ALE + ++R+ D + + +L++
Sbjct: 365 KMEEKGISPDTKTYNILLSLHADAGDIEAALEYYRKIRKVGLFPDTVTHRAVLHILCQRK 424
Query: 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE 457
+V E E + +M + + D +S ++ +Y + G V A LFE
Sbjct: 425 MVAEVEAVIAEMD-RNSIRIDEHSVPVIMQMYVNEGLVVQAKALFE 469
Score = 89.4 bits (220), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 125/282 (44%), Gaps = 9/282 (3%)
Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
T++T+I + ++A F M K+G+ D VT++ ++ G + E SL ++
Sbjct: 307 TFNTLIDLYGKAGRLNDAANLFSEMLKSGVPIDTVTFNTMIHTCGTHGHLSEAESLLKKM 366
Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
G PD +++L + ++GD + ++++ +G+ P+ V + +L + +
Sbjct: 367 EEKGISPDTKTYNILLSLHADAGDIEAALEYYRKIRKVGLFPDTVTHRAVLHILCQRKMV 426
Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
++ EM + + DE ++ ++++Y A L+ER + +D +L +T
Sbjct: 427 AEVEAVIAEMDRNSIRIDEHSVPVIMQMYVNEGLVVQAKALFERFQ-----LDCVLSSTT 481
Query: 404 LNMCADI----GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
L D+ GL EAE +F + + D Y M+ YG + A+ LF+ M
Sbjct: 482 LAAVIDVYAEKGLWVEAETVFYGKRNMSGQRNDVLEYNVMIKAYGKAKLHEKALSLFKGM 541
Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
G + L Q L +D+ R+ +D G KP
Sbjct: 542 KNQGTWPDECTYNSLFQMLAGVDLVDEAQRILAEMLDSGCKP 583
Score = 80.1 bits (196), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/270 (21%), Positives = 126/270 (46%), Gaps = 3/270 (1%)
Query: 259 TYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEM 318
T++ ++D+Y K+G++ + +L+ + SG D + F+ + G G +L++M
Sbjct: 307 TFNTLIDLYGKAGRLNDAANLFSEMLKSGVPIDTVTFNTMIHTCGTHGHLSEAESLLKKM 366
Query: 319 KSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWA 378
+ G+ P+ YN LL AG A + ++ + GL PD T A++ I + +
Sbjct: 367 EEKGISPDTKTYNILLSLHADAGDIEAALEYYRKIRKVGLFPDTVTHRAVLHILCQRKMV 426
Query: 379 KDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTA 438
+ + M N +D ++ M + GLV +A+ LFE +L C + + A
Sbjct: 427 AEVEAVIAEMDRNSIRIDEHSVPVIMQMYVNEGLVVQAKALFERFQLD--CVLSSTTLAA 484
Query: 439 MLNIYGSGGN-VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDR 497
++++Y G V+ + + + G +V+ +I+ GKA+ + + +F ++
Sbjct: 485 VIDVYAEKGLWVEAETVFYGKRNMSGQRNDVLEYNVMIKAYGKAKLHEKALSLFKGMKNQ 544
Query: 498 GVKPDDRLCGCLLSVVSLCETSEDVGKVIT 527
G PD+ L +++ + ++ +++
Sbjct: 545 GTWPDECTYNSLFQMLAGVDLVDEAQRILA 574
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 104/245 (42%), Gaps = 12/245 (4%)
Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
D I+++T++ K + DEAIE E M ++GL+ D +++ ++ YA G++ E L+
Sbjct: 723 DVISFATMMYLYKGMGMLDEAIEVAEEMRESGLLSDCTSFNQVMACYAADGQLSECCELF 782
Query: 281 -----ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLE 335
ER + W F++L K S ++ E K L + TL
Sbjct: 783 HEMLVERKLLLDWGTFKTLFTLLKKGGVPSEAVSQLQTAYNEAKPLATP---AITATLFS 839
Query: 336 AMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPM 395
AMG A E+ + + A+I Y + AL+ + RM+E
Sbjct: 840 AMGLYA---YALESCQELTSGEIPREHFAYNAVIYTYSASGDIDMALKAYMRMQEKGLEP 896
Query: 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIEL 455
D + L+ + G+VE +R+ + + +P + A+ + Y S D A +
Sbjct: 897 DIVTQAYLVGIYGKAGMVEGVKRVHSRLTFGE-LEPSQSLFKAVRDAYVSANRQDLADVV 955
Query: 456 FEEMS 460
+EMS
Sbjct: 956 KKEMS 960
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 50/108 (46%)
Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
E+ S EI ++ Y+ +I D A++ + RM + GL PD VT + ++ +Y K+
Sbjct: 852 QELTSGEIPREHFAYNAVIYTYSASGDIDMALKAYMRMQEKGLEPDIVTQAYLVGIYGKA 911
Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEM 318
G VE V ++ R +P F + + + D V +EM
Sbjct: 912 GMVEGVKRVHSRLTFGELEPSQSLFKAVRDAYVSANRQDLADVVKKEM 959
Score = 34.3 bits (77), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 79/192 (41%), Gaps = 13/192 (6%)
Query: 190 YNVTMKSLRFGRQFQLIEQLANEM-VSNEIELDNITYSTIITCAKRCNLFDEAIEWFERM 248
+N M Q +L +EM V ++ LD T+ T+ T K+ + EA+ +
Sbjct: 762 FNQVMACYAADGQLSECCELFHEMLVERKLLLDWGTFKTLFTLLKKGGVPSEAVSQLQTA 821
Query: 249 YKTG--LMPDEVTYS--AILDVYAKSGKVEEVLSLYERGVASGWKP-DPIAFSVLGKMFG 303
Y L +T + + + +YA + + + L+ SG P + A++ + +
Sbjct: 822 YNEAKPLATPAITATLFSAMGLYAYALESCQELT-------SGEIPREHFAYNAVIYTYS 874
Query: 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363
SGD D M+ G++P++V L+ GKAG + + + L P +
Sbjct: 875 ASGDIDMALKAYMRMQEKGLEPDIVTQAYLVGIYGKAGMVEGVKRVHSRLTFGELEPSQS 934
Query: 364 TLTALIKIYGKA 375
A+ Y A
Sbjct: 935 LFKAVRDAYVSA 946
>sp|Q9LQ15|PPR95_ARATH Pentatricopeptide repeat-containing protein At1g62914,
mitochondrial OS=Arabidopsis thaliana GN=At1g62914 PE=2
SV=1
Length = 528
Score = 124 bits (311), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/294 (27%), Positives = 147/294 (50%), Gaps = 1/294 (0%)
Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
L ++MV + D +T++T+I N EA+ +RM + G PD VTY A+++
Sbjct: 170 LVDQMVEMGYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLC 229
Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
K G + L+L + A+ + + + +S + + D + EM++ GV+PN++
Sbjct: 230 KRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVI 289
Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
Y++L+ + G+ A L +M+E + P+ T +ALI + K A +L+E M
Sbjct: 290 TYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEM 349
Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
+ + Y++L+N + + EA+++ E M D C P+ +Y ++N +
Sbjct: 350 IKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKD-CLPNVVTYNTLINGFCKAKR 408
Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
VD +ELF EMS+ G+ N + T LI +AR D+ VF + GV P+
Sbjct: 409 VDKGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPN 462
Score = 93.2 bits (230), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 119/254 (46%), Gaps = 1/254 (0%)
Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
+ Y+ + SL R L EM + + + ITYS++I+C + +A
Sbjct: 253 VVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLS 312
Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
M + + P+ VT+SA++D + K GK+ + LYE + P+ +S L F
Sbjct: 313 DMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLD 372
Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
+ +L+ M PN+V YNTL+ KA + LF EM + GL + T T
Sbjct: 373 RLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYT 432
Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
LI + +AR +A ++++M + + YN LL+ G + +A +FE ++ S
Sbjct: 433 TLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRS 492
Query: 427 DYCKPDNYSYTAML 440
+PD Y+Y M+
Sbjct: 493 TM-EPDIYTYNIMI 505
Score = 86.7 bits (213), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 92/172 (53%), Gaps = 1/172 (0%)
Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
E+L EM+ I+ + TYS++I + EA + E M + +P+ VTY+ +++
Sbjct: 343 EKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLING 402
Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
+ K+ +V++ + L+ G + + ++ L F ++ D D + V ++M S+GV PN
Sbjct: 403 FCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPN 462
Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA-RW 377
++ YN LL+ + K GK A +F+ + S + PD T +I+ KA +W
Sbjct: 463 ILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKW 514
Score = 83.6 bits (205), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 77/291 (26%), Positives = 137/291 (47%), Gaps = 11/291 (3%)
Query: 260 YSAILDVYAKSGKVEEVLSLYERGVASGWKPDP--IAFSVLGKMFGESGDYDGIRYVLQE 317
Y +L ++++ + L+ GV + +P P I FS L + +D + ++
Sbjct: 46 YREVLRTGLSDIELDDAIGLF--GVMAQSRPFPSIIEFSKLLSAIAKMNKFDLVISFGEK 103
Query: 318 MKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARW 377
M+ LG+ NL YN L+ + + LA +L +M++ G PD TL +L+ +
Sbjct: 104 MEILGISHNLYTYNILINCFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNR 163
Query: 378 AKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYT 437
DA+ L ++M E + D + + TL++ EA L + M + C+PD +Y
Sbjct: 164 ISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNKASEAVALIDRM-VQRGCQPDLVTYG 222
Query: 438 AMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDR 497
A++N G+ D A+ L +M + NV+ + +I L K R DD + +F ++
Sbjct: 223 AVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENK 282
Query: 498 GVKPD----DRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIE 544
GV+P+ L CL + + S + +I ++ NP LV F LI+
Sbjct: 283 GVRPNVITYSSLISCLCNYGRWSDASRLLSDMIE--RKINPNLVTFSALID 331
Score = 81.3 bits (199), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/280 (21%), Positives = 133/280 (47%), Gaps = 1/280 (0%)
Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
I +S +++ + N FD I + E+M G+ + TY+ +++ + + ++ L+L +
Sbjct: 79 IEFSKLLSAIAKMNKFDLVISFGEKMEILGISHNLYTYNILINCFCRCSRLSLALALLGK 138
Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
+ G++PD + + L F ++ +M +G +P+ V + TL+ + K
Sbjct: 139 MMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNK 198
Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
A +L D MV+ G PD T A++ K AL L +M K + ++Y+T
Sbjct: 199 ASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYST 258
Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
+++ ++A LF +M+ + +P+ +Y+++++ + G +A L +M E
Sbjct: 259 VIDSLCKYRHEDDALNLFTEME-NKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIER 317
Query: 463 GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
+ N++ + LI K ++ +++ I R + P+
Sbjct: 318 KINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPN 357
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 94/201 (46%), Gaps = 1/201 (0%)
Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
+L ++M+ +I + +T+S +I + +A + +E M K + P+ TYS++++ +
Sbjct: 309 RLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGF 368
Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL 327
++ E + E + P+ + ++ L F ++ D + +EM G+ N
Sbjct: 369 CMLDRLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNT 428
Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387
V Y TL+ +A A+ +F +MV G+ P+ T L+ K A+ ++E
Sbjct: 429 VTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEY 488
Query: 388 MRENKWPMDFILYNTLL-NMC 407
++ + D YN ++ MC
Sbjct: 489 LQRSTMEPDIYTYNIMIEGMC 509
>sp|O49436|PP327_ARATH Pentatricopeptide repeat-containing protein At4g20090
OS=Arabidopsis thaliana GN=EMB1025 PE=3 SV=1
Length = 660
Score = 124 bits (310), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 88/361 (24%), Positives = 174/361 (48%), Gaps = 9/361 (2%)
Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
++ + ++S+ P + YNV + L + +L + M + +TY+T+
Sbjct: 240 EAVLLLDEMQSEGCSP-SPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTL 298
Query: 229 IT--CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
I C K D+A+ ERM + +P++VTY +++ K + + + L
Sbjct: 299 IHGLCLK--GKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEER 356
Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
G+ + +SVL + G + + ++M G +PN+VVY+ L++ + + GKP A
Sbjct: 357 GYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEA 416
Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
+ + + M+ SG P+ T ++L+K + K ++A+++W+ M + + Y+ L++
Sbjct: 417 KEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDG 476
Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM---SELG 463
+G V+EA ++ M L+ KPD +Y++++ G++D A++L+ EM E
Sbjct: 477 LCGVGRVKEAMMVWSKM-LTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPK 535
Query: 464 VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVG 523
+V+ L+ L + I V + +DRG PD C L+ +S S D G
Sbjct: 536 SQPDVVTYNILLDGLCMQKDISRAVDLLNSMLDRGCDPDVITCNTFLNTLSEKSNSCDKG 595
Query: 524 K 524
+
Sbjct: 596 R 596
Score = 117 bits (294), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/346 (23%), Positives = 152/346 (43%), Gaps = 34/346 (9%)
Query: 191 NVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYK 250
NV + + R + + + N ++ I + ++++ +I + D AIE F M +
Sbjct: 156 NVIINEGLYHRGLEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPE 215
Query: 251 TGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDG 310
+PD TY ++D K +++E + L + + G P P+ ++VL + GD
Sbjct: 216 RKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTR 275
Query: 311 IRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK 370
+ ++ M G PN V YNTL+ + GK A SL + MV S P++ T LI
Sbjct: 276 VTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLIN 335
Query: 371 IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK------ 424
K R A DA+ L M E + ++ +Y+ L++ G EEA L+ M
Sbjct: 336 GLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKP 395
Query: 425 ----------------------------LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELF 456
++ C P+ Y+Y++++ + G + A++++
Sbjct: 396 NIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVW 455
Query: 457 EEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
+EM + G + N + LI L R+ + + V+ + G+KPD
Sbjct: 456 KEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPD 501
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 84/197 (42%), Gaps = 15/197 (7%)
Query: 302 FGESGDYDGIRYVLQEMKSLGVQPNLVV---YNTLLEAMGKAGKPGLARSLFDEMV-ESG 357
+ SGD+D + +L ++ ++ +++ + + A GKA P A LF MV E
Sbjct: 87 YANSGDFDSVEKLLSRIR---LENRVIIERSFIVVFRAYGKAHLPDKAVDLFHRMVDEFR 143
Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDF----ILYNTLLNMCADIGLV 413
K+ +++ + LE ++ + + M+ + +N ++ + V
Sbjct: 144 CKRSVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLRFV 203
Query: 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTC 473
+ A +F M C PD Y+Y +++ +D A+ L +EM G + + +
Sbjct: 204 DRAIEVFRGMP-ERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNV 262
Query: 474 LIQCLGKARRIDDLVRV 490
LI L K DL RV
Sbjct: 263 LIDGLCKK---GDLTRV 276
>sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700,
mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3
SV=1
Length = 602
Score = 124 bits (310), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 83/317 (26%), Positives = 157/317 (49%), Gaps = 1/317 (0%)
Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
+ + YN + + L L +M ++ D TYSTII R D AI F
Sbjct: 192 DVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLF 251
Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
+ M G+ VTY++++ K+GK + L + V+ P+ I F+VL +F +
Sbjct: 252 KEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKE 311
Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
G + +EM + G+ PN++ YNTL++ + A ++ D MV + +PD T
Sbjct: 312 GKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTF 371
Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
T+LIK Y + D ++++ + + + + Y+ L+ G ++ AE LF++M +
Sbjct: 372 TSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEM-V 430
Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
S PD +Y +L+ G ++ A+E+FE++ + + + ++ T +I+ + K +++
Sbjct: 431 SHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVE 490
Query: 486 DLVRVFGVSIDRGVKPD 502
D +F +GVKP+
Sbjct: 491 DAWNLFCSLPCKGVKPN 507
Score = 112 bits (280), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/335 (25%), Positives = 157/335 (46%), Gaps = 7/335 (2%)
Query: 219 ELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS 278
E D T++T+I EA+ +RM + G PD VTY++I++ +SG L
Sbjct: 155 EPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALD 214
Query: 279 LYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMG 338
L + K D +S + G D + +EM++ G++ ++V YN+L+ +
Sbjct: 215 LLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLC 274
Query: 339 KAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFI 398
KAGK L +MV + P+ T L+ ++ K ++A EL++ M + I
Sbjct: 275 KAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNII 334
Query: 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458
YNTL++ + EA + D+ + + C PD ++T+++ Y VD+ +++F
Sbjct: 335 TYNTLMDGYCMQNRLSEANNML-DLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRN 393
Query: 459 MSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCET 518
+S+ G+ N + + L+Q ++ +I +F + GV PD G LL LC+
Sbjct: 394 ISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLD--GLCDN 451
Query: 519 S--EDVGKVITCLQQANPKL--VAFLNLIEDNSTG 549
E ++ LQ++ L V + +IE G
Sbjct: 452 GKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKG 486
Score = 87.4 bits (215), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 122/259 (47%), Gaps = 1/259 (0%)
Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
I YN M + + + MV N+ D +T++++I D+ ++ F
Sbjct: 334 ITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRN 393
Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
+ K GL+ + VTYS ++ + +SGK++ L++ V+ G PD + + +L ++G
Sbjct: 394 ISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGK 453
Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
+ + ++++ + +V+Y T++E M K GK A +LF + G+ P+ T T
Sbjct: 454 LEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTV 513
Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
+I K +A L +M E+ + YNTL+ G + + +L E+MK
Sbjct: 514 MISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCG 573
Query: 428 YCKPDNYSYTAMLNIYGSG 446
+ D S ++++ SG
Sbjct: 574 F-SADASSIKMVIDMLLSG 591
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/247 (20%), Positives = 113/247 (45%), Gaps = 1/247 (0%)
Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
+ +S + R F+ +++ +++ G+ + T + +++ + + K S+ +
Sbjct: 89 VDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGK 148
Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
+ G++PD F+ L K G ++ M G QP++V YN+++ + ++G
Sbjct: 149 VMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGD 208
Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
LA L +M E + D T + +I + A+ L++ M + YN+
Sbjct: 209 TSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNS 268
Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
L+ G + L +DM +S P+ ++ +L+++ G + A EL++EM
Sbjct: 269 LVRGLCKAGKWNDGALLLKDM-VSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITR 327
Query: 463 GVAINVM 469
G++ N++
Sbjct: 328 GISPNII 334
Score = 74.7 bits (182), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 95/197 (48%)
Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
+ Y++ ++ + +L E+L EMVS+ + D +TY ++ ++A+E FE
Sbjct: 404 VTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFED 463
Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
+ K+ + V Y+ I++ K GKVE+ +L+ G KP+ + ++V+ + G
Sbjct: 464 LQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGS 523
Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
+L++M+ G PN YNTL+ A + G + L +EM G + D ++
Sbjct: 524 LSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKM 583
Query: 368 LIKIYGKARWAKDALEL 384
+I + K L++
Sbjct: 584 VIDMLLSGELDKSFLDM 600
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 112/242 (46%), Gaps = 6/242 (2%)
Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
S I+D+ K ++ ++L++ + S P + FS + ++ + ++++
Sbjct: 62 SGIVDI-----KKDDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLEL 116
Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380
G+ N+ N ++ + K A S+ ++++ G PD T LIK +
Sbjct: 117 NGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSE 176
Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
A+ L +RM EN D + YN+++N G A L M+ + K D ++Y+ ++
Sbjct: 177 AVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNV-KADVFTYSTII 235
Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
+ G +D AI LF+EM G+ +V+ L++ L KA + +D + + R +
Sbjct: 236 DSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIV 295
Query: 501 PD 502
P+
Sbjct: 296 PN 297
Score = 42.0 bits (97), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/154 (19%), Positives = 68/154 (44%), Gaps = 1/154 (0%)
Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
F + S + P + + Y + + L + + ++ ++ ++++L + Y+TII
Sbjct: 425 LFQEMVSHGVLP-DVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGM 483
Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
+ ++A F + G+ P+ +TY+ ++ K G + E L + G P+
Sbjct: 484 CKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPND 543
Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
++ L + GD +++EMKS G +
Sbjct: 544 CTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSAD 577
>sp|Q5G1S8|PP241_ARATH Pentatricopeptide repeat-containing protein At3g18110,
chloroplastic OS=Arabidopsis thaliana GN=EMB1270 PE=2
SV=2
Length = 1440
Score = 122 bits (306), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 88/356 (24%), Positives = 166/356 (46%), Gaps = 17/356 (4%)
Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEM-------VSNEIE 219
WQ++ F W+ ++ + L GR Q E LA E+ V + ++
Sbjct: 171 WQRALEVFEWLNLRHWHSPNARMVAAILGVL--GRWNQ--ESLAVEIFTRAEPTVGDRVQ 226
Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS- 278
+ Y+ ++ R F +A E + M + G +PD ++++ +++ KSG + L+
Sbjct: 227 V----YNAMMGVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAV 282
Query: 279 -LYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
L + SG +PD I ++ L + DG V ++M++ QP+L YN ++
Sbjct: 283 ELLDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVY 342
Query: 338 GKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDF 397
G+ G A LF E+ G PD T +L+ + + R + E++++M++ + D
Sbjct: 343 GRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDE 402
Query: 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE 457
+ YNT+++M G ++ A +L++DMK PD +YT +++ G A L
Sbjct: 403 MTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMS 462
Query: 458 EMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVV 513
EM ++G+ + + LI KA + ++ F + G KPD+ +L V+
Sbjct: 463 EMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVL 518
Score = 117 bits (294), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 90/298 (30%), Positives = 138/298 (46%), Gaps = 11/298 (3%)
Query: 212 EMVSNE-IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
+MV N + D ITY+T+++ R + D A++ FE M PD TY+A++ VY +
Sbjct: 286 DMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRC 345
Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
G E L+ G+ PD + ++ L F + + ++ V Q+M+ +G + + Y
Sbjct: 346 GLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTY 405
Query: 331 NTLLEAMGKAGKPGLARSLFDEMVE-SGLTPDEKTLTALIKIYGKARWAKDALELWERMR 389
NT++ GK G+ LA L+ +M SG PD T T LI GKA +A L M
Sbjct: 406 NTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEML 465
Query: 390 ENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNV 449
+ Y+ L+ A G EEAE F M L KPDN +Y+ ML++ G
Sbjct: 466 DVGIKPTLQTYSALICGYAKAGKREEAEDTFSCM-LRSGTKPDNLAYSVMLDVLLRGNET 524
Query: 450 DNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCG 507
A L+ +M G + +I L K R DD I + ++ + LCG
Sbjct: 525 RKAWGLYRDMISDGHTPSYTLYELMILGLMKENRSDD--------IQKTIRDMEELCG 574
Score = 107 bits (266), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 85/314 (27%), Positives = 151/314 (48%), Gaps = 7/314 (2%)
Query: 226 STIITCAKRCNLFDEAIEWFERMYKTGLMPDEV-TYSAILDVYAKSGKVEEVLSLYERGV 284
+ I+ R N A+E F R T + D V Y+A++ VY++SGK + L +
Sbjct: 195 AAILGVLGRWNQESLAVEIFTRAEPT--VGDRVQVYNAMMGVYSRSGKFSKAQELVDAMR 252
Query: 285 ASGWKPDPIAFSVLGKMFGESGDYDGIRYV--LQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
G PD I+F+ L +SG V L +++ G++P+ + YNTLL A +
Sbjct: 253 QRGCVPDLISFNTLINARLKSGGLTPNLAVELLDMVRNSGLRPDAITYNTLLSACSRDSN 312
Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
A +F++M PD T A+I +YG+ A +A L+ + + D + YN+
Sbjct: 313 LDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERLFMELELKGFFPDAVTYNS 372
Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
LL A E+ + +++ M+ + K D +Y ++++YG G +D A++L+++M L
Sbjct: 373 LLYAFARERNTEKVKEVYQQMQKMGFGK-DEMTYNTIIHMYGKQGQLDLALQLYKDMKGL 431
Query: 463 -GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSED 521
G + + T LI LGKA R + + +D G+KP + L+ + E+
Sbjct: 432 SGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKPTLQTYSALICGYAKAGKREE 491
Query: 522 VGKVITCLQQANPK 535
+C+ ++ K
Sbjct: 492 AEDTFSCMLRSGTK 505
Score = 104 bits (260), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 109/487 (22%), Positives = 203/487 (41%), Gaps = 29/487 (5%)
Query: 232 AKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291
A+ N+F E + + M G +P Y ++++ K +V + + + +K +
Sbjct: 868 ARAGNIF-EVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVE 926
Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
++ + KM+ DY V Q +K G++P+ YNTL+ + +P L
Sbjct: 927 LAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQ 986
Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411
+M GL P T +LI +GK + + A +L+E + +D Y+T++ + D G
Sbjct: 987 QMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSG 1046
Query: 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC 471
+AE+L + MK + +P + ++ Y S GN A ++ + + V + +
Sbjct: 1047 SDSKAEKLLQMMKNAG-IEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELTTLPY 1105
Query: 472 TCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVS----------LCETSED 521
+ +I +++ + + G++PD R+ C + S L + ED
Sbjct: 1106 SSVIDAYLRSKDYNSGIERLLEMKKEGLEPDHRIWTCFVRAASFSKEKIEVMLLLKALED 1165
Query: 522 VG-KVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDIC 580
+G + L P+L L+ + FE +K E +A F N L+++
Sbjct: 1166 IGFDLPIRLLAGRPEL-----LVSEVDGWFEK--------LKSIEDNAALNFVNALLNLL 1212
Query: 581 RNRNLNERAHELLYLGTLYGLYPGLHNKTLD-EWSLDVRSLSVGAAQTALEEWMWTLAKI 639
L A + LG G++ + D +W D R LS GAA AL W+ +
Sbjct: 1213 WAFELRATASWVFQLGIKRGIFSLDVFRVADKDWGADFRRLSGGAALVALTLWLDHMQDA 1272
Query: 640 VLRE-EVLPQLFLAETGTGTHKFSQGLATAFASHVNKLAAPFRQSEGKAGCFVATREDLV 698
L P+ + TGT + L + + ++ +PF + + G VA L
Sbjct: 1273 SLEGYPESPKSVVLITGTAEYN-GISLDKTLKACLWEMGSPFLPCKTRTGLLVAKAHSLR 1331
Query: 699 SWVQARP 705
W++ P
Sbjct: 1332 MWLKDSP 1338
Score = 87.0 bits (214), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 72/373 (19%), Positives = 170/373 (45%), Gaps = 5/373 (1%)
Query: 225 YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
Y+ II + L+ +A + ++G PD T+++++ YA+ G E +++ +
Sbjct: 755 YTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMM 814
Query: 285 ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344
G P + ++L G + + V++E++ +G + + +L+A +AG
Sbjct: 815 RDGPSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIF 874
Query: 345 LARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
+ ++ M +G P + +I++ K + +DA + M E + ++ ++N++L
Sbjct: 875 EVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSML 934
Query: 405 NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
M I ++ ++++ +K + +PD +Y ++ +Y + L ++M LG+
Sbjct: 935 KMYTAIEDYKKTVQVYQRIKETG-LEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGL 993
Query: 465 AINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGK 524
+ LI GK + ++ ++F + +G+K D ++ + + K
Sbjct: 994 DPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEK 1053
Query: 525 VITCLQQAN--PKLVAF-LNLIEDNSTGFENIKEEFRNVIKDTEVD-ARRPFCNCLIDIC 580
++ ++ A P L L ++ +S+G E+ + +KDTEV+ P+ + +
Sbjct: 1054 LLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELTTLPYSSVIDAYL 1113
Query: 581 RNRNLNERAHELL 593
R+++ N LL
Sbjct: 1114 RSKDYNSGIERLL 1126
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 92/429 (21%), Positives = 157/429 (36%), Gaps = 85/429 (19%)
Query: 183 FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIEL-----DNITYSTIITCAKRCNL 237
F + + YN + +G+Q QL LA ++ + L D ITY+ +I + N
Sbjct: 398 FGKDEMTYNTIIH--MYGKQGQL--DLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANR 453
Query: 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
EA M G+ P TYSA++ YAK+GK EE + + SG KPD +A+SV
Sbjct: 454 TVEAAALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSV 513
Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVE-S 356
+ + + + ++M S G P+ +Y ++ + K + + +M E
Sbjct: 514 MLDVLLRGNETRKAWGLYRDMISDGHTPSYTLYELMILGLMKENRSDDIQKTIRDMEELC 573
Query: 357 GLTPDE------------------------------KTLTALIKIYGKARWAKDALELWE 386
G+ P E TL +++ Y + +A EL E
Sbjct: 574 GMNPLEISSVLVKGECFDLAARQLKVAITNGYELENDTLLSILGSYSSSGRHSEAFELLE 633
Query: 387 RMRENK------------------------------------WPM-DFILYNTLLNMCAD 409
++E+ W +Y TLL+ C
Sbjct: 634 FLKEHASGSKRLITEALIVLHCKVNNLSAALDEYFADPCVHGWCFGSSTMYETLLHCCVA 693
Query: 410 IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVM 469
EA ++F D++LS C+ +M+ +Y G + A ++ + G
Sbjct: 694 NEHYAEASQVFSDLRLSG-CEASESVCKSMVVVYCKLGFPETAHQVVNQAETKGFHF--- 749
Query: 470 GC----TCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKV 525
C T +I+ GK + V G G PD + L+S + C E +
Sbjct: 750 ACSPMYTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAI 809
Query: 526 ITCLQQANP 534
+ + P
Sbjct: 810 FNTMMRDGP 818
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 82/186 (44%), Gaps = 5/186 (2%)
Query: 183 FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
F +E +N +K ++ Q+ + +E D TY+T+I R +E
Sbjct: 923 FKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGY 982
Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
++M GL P TY +++ + K +E+ L+E ++ G K D + + K+
Sbjct: 983 LLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKIS 1042
Query: 303 GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
+SG +LQ MK+ G++P L + L+ + +G P A E V S L E
Sbjct: 1043 RDSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEA-----EKVLSNLKDTE 1097
Query: 363 KTLTAL 368
LT L
Sbjct: 1098 VELTTL 1103
Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 106/232 (45%), Gaps = 14/232 (6%)
Query: 158 LLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGR---QFQLIEQLANEMV 214
L + +++ ++K+ + IK L P ET + + + R R + L++Q+ N +
Sbjct: 934 LKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGL 993
Query: 215 SNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVE 274
+++ TY ++I+ + ++A + FE + GL D Y ++ + SG
Sbjct: 994 DPKLD----TYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDS 1049
Query: 275 EVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLL 334
+ L + +G +P +L + SG+ VL +K V+ + Y++++
Sbjct: 1050 KAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELTTLPYSSVI 1109
Query: 335 EAM--GKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384
+A K G+ R L EM + GL PD + T ++ A ++K+ +E+
Sbjct: 1110 DAYLRSKDYNSGIERLL--EMKKEGLEPDHRIWTCFVR---AASFSKEKIEV 1156
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 87/208 (41%), Gaps = 2/208 (0%)
Query: 325 PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384
PN + +L +G+ + LA +F E + + A++ +Y ++ A EL
Sbjct: 189 PNARMVAAILGVLGRWNQESLAVEIFTR-AEPTVGDRVQVYNAMMGVYSRSGKFSKAQEL 247
Query: 385 WERMRENKWPMDFILYNTLLNM-CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIY 443
+ MR+ D I +NTL+N GL DM + +PD +Y +L+
Sbjct: 248 VDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAVELLDMVRNSGLRPDAITYNTLLSAC 307
Query: 444 GSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503
N+D A+++FE+M ++ +I G+ + R+F +G PD
Sbjct: 308 SRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERLFMELELKGFFPDA 367
Query: 504 RLCGCLLSVVSLCETSEDVGKVITCLQQ 531
LL + +E V +V +Q+
Sbjct: 368 VTYNSLLYAFARERNTEKVKEVYQQMQK 395
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 56/263 (21%), Positives = 107/263 (40%), Gaps = 40/263 (15%)
Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
+Y ++EA GK A S+ + +SG TPD KT
Sbjct: 754 MYTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKT------------------------ 789
Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
+N+L++ A G E A +F M + D P S +L+ G
Sbjct: 790 -----------WNSLMSAYAQCGCYERARAIFNTM-MRDGPSPTVESINILLHALCVDGR 837
Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGC 508
++ + EE+ ++G I+ ++ +A I ++ +++ G P RL
Sbjct: 838 LEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRM 897
Query: 509 LLSVVSLCETSEDVGKVITCLQQANPKL-VAFLNLIEDNSTGFENIKE--EFRNVIKDTE 565
++ ++ + D +++ +++AN K+ +A N + T E+ K+ + IK+T
Sbjct: 898 MIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETG 957
Query: 566 VDARRPFCNCLIDI-CRNRNLNE 587
++ N LI + CR+R E
Sbjct: 958 LEPDETTYNTLIIMYCRDRRPEE 980
>sp|O82178|PP186_ARATH Pentatricopeptide repeat-containing protein At2g35130
OS=Arabidopsis thaliana GN=At2g35130 PE=2 SV=1
Length = 591
Score = 122 bits (306), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 80/290 (27%), Positives = 140/290 (48%), Gaps = 7/290 (2%)
Query: 255 PDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYV 314
P+ TY+A+++ +A+ G E+ ++E+ G +PD ++ L + + +G G +
Sbjct: 297 PNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEI 356
Query: 315 LQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK 374
M+ +G +P+ YN +++A G+AG A ++F+EM G+ P K+ L+ Y K
Sbjct: 357 FSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSK 416
Query: 375 ARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNY 434
AR + + M EN D + N++LN+ +G + E++ +M+ + C D
Sbjct: 417 ARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEME-NGPCTADIS 475
Query: 435 SYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVS 494
+Y ++NIYG G ++ ELF E+ E +V+ T I + + + VF
Sbjct: 476 TYNILINIYGKAGFLERIEELFVELKEKNFRPDVVTWTSRIGAYSRKKLYVKCLEVFEEM 535
Query: 495 IDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQA------NPKLVA 538
ID G PD LLS S E E V V+ + + PKL+A
Sbjct: 536 IDSGCAPDGGTAKVLLSACSSEEQVEQVTSVLRTMHKGVTVSSLVPKLMA 585
Score = 117 bits (293), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 76/295 (25%), Positives = 146/295 (49%), Gaps = 8/295 (2%)
Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
+L EM S++ + + TY+ ++ R L ++A E FE++ + GL PD Y+A+++ Y
Sbjct: 285 KLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESY 344
Query: 268 AKSG---KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQ 324
+++G E+ SL + G +PD +++++ +G +G + V +EMK LG+
Sbjct: 345 SRAGYPYGAAEIFSLMQH---MGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIA 401
Query: 325 PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384
P + + LL A KA ++ EM E+G+ PD L +++ +YG+ ++
Sbjct: 402 PTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKI 461
Query: 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYG 444
M D YN L+N+ G +E E LF ++K ++ +PD ++T+ + Y
Sbjct: 462 LAEMENGPCTADISTYNILINIYGKAGFLERIEELFVELKEKNF-RPDVVTWTSRIGAYS 520
Query: 445 SGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGV 499
+E+FEEM + G A + L+ +++ + V ++ +GV
Sbjct: 521 RKKLYVKCLEVFEEMIDSGCAPDGGTAKVLLSACSSEEQVEQVTSVLR-TMHKGV 574
Score = 103 bits (258), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 86/337 (25%), Positives = 146/337 (43%), Gaps = 51/337 (15%)
Query: 214 VSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKV 273
VS ++ L+ S I+ C EW R K+ PD + ++ ++D Y + +
Sbjct: 125 VSVQLRLNKKWDSIILVC-----------EWILR--KSSFQPDVICFNLLIDAYGQKFQY 171
Query: 274 EEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV---VY 330
+E SLY + + S + P +++L K + +G + VL EM++ V P + VY
Sbjct: 172 KEAESLYVQLLESRYVPTEDTYALLIKAYCMAGLIERAEVVLVEMQNHHVSPKTIGVTVY 231
Query: 331 NTLLEA-MGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMR 389
N +E M + G A +F M P +T +I +YGKA + + +L+ MR
Sbjct: 232 NAYIEGLMKRKGNTEEAIDVFQRMKRDRCKPTTETYNLMINLYGKASKSYMSWKLYCEMR 291
Query: 390 ENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK--------------LSDY------- 428
++ + Y L+N A GL E+AE +FE ++ + Y
Sbjct: 292 SHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPY 351
Query: 429 -------------CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLI 475
C+PD SY M++ YG G +A +FEEM LG+A + L+
Sbjct: 352 GAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLL 411
Query: 476 QCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSV 512
KAR + + + GV+PD + +L++
Sbjct: 412 SAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSMLNL 448
Score = 66.6 bits (161), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 95/212 (44%), Gaps = 5/212 (2%)
Query: 324 QPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA-L 382
QP+++ +N L++A G+ + A SL+ +++ES P E T LIK Y A + A +
Sbjct: 152 QPDVICFNLLIDAYGQKFQYKEAESLYVQLLESRYVPTEDTYALLIKAYCMAGLIERAEV 211
Query: 383 ELWERMRENKWP--MDFILYNTLL-NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAM 439
L E + P + +YN + + G EEA +F+ MK D CKP +Y M
Sbjct: 212 VLVEMQNHHVSPKTIGVTVYNAYIEGLMKRKGNTEEAIDVFQRMK-RDRCKPTTETYNLM 270
Query: 440 LNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGV 499
+N+YG + +L+ EM N+ T L+ + + +F + G+
Sbjct: 271 INLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGL 330
Query: 500 KPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ 531
+PD + L+ S ++ + +Q
Sbjct: 331 EPDVYVYNALMESYSRAGYPYGAAEIFSLMQH 362
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 122 bits (306), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 96/355 (27%), Positives = 169/355 (47%), Gaps = 9/355 (2%)
Query: 192 VTMKSLR----FGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
VT+ SL G++ L ++MV D IT++T+I N EA+ +R
Sbjct: 156 VTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDR 215
Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
M + G P+ VTY +++ K G + L+L + A+ + D + F+ + +
Sbjct: 216 MVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRH 275
Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
D + +EM++ G++PN+V Y++L+ + G+ A L +M+E + P+ T A
Sbjct: 276 VDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNA 335
Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
LI + K +A +L++ M + D YN+L+N +++A+++FE M +S
Sbjct: 336 LIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFM-VSK 394
Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
C PD +Y ++ + V++ ELF EMS G+ + + T LIQ L D+
Sbjct: 395 DCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNA 454
Query: 488 VRVFGVSIDRGVKPDDRLCGCLLSVVSLCETS--EDVGKVITCLQQANPKLVAFL 540
+VF + GV PD LL LC E +V +Q++ KL ++
Sbjct: 455 QKVFKQMVSDGVPPDIMTYSILLD--GLCNNGKLEKALEVFDYMQKSEIKLDIYI 507
Score = 120 bits (300), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 80/315 (25%), Positives = 152/315 (48%), Gaps = 1/315 (0%)
Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
+ Y V + L L L N+M + +IE D + ++TII + D+A+ F+
Sbjct: 226 VTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKE 285
Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
M G+ P+ VTYS+++ G+ + L + P+ + F+ L F + G
Sbjct: 286 METKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGK 345
Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
+ + +M + P++ YN+L+ + A+ +F+ MV PD T
Sbjct: 346 FVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNT 405
Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
LIK + K++ +D EL+ M D + Y TL+ G + A+++F+ M +SD
Sbjct: 406 LIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQM-VSD 464
Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
PD +Y+ +L+ + G ++ A+E+F+ M + + +++ T +I+ + KA ++DD
Sbjct: 465 GVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDG 524
Query: 488 VRVFGVSIDRGVKPD 502
+F +GVKP+
Sbjct: 525 WDLFCSLSLKGVKPN 539
Score = 112 bits (280), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/297 (27%), Positives = 141/297 (47%), Gaps = 1/297 (0%)
Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
+ + +N + SL R L EM + I + +TYS++I+C + +A +
Sbjct: 259 DVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLL 318
Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
M + + P+ VT++A++D + K GK E LY+ + PD ++ L F
Sbjct: 319 SDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMH 378
Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
D + + + M S P++V YNTL++ K+ + LF EM GL D T
Sbjct: 379 DRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTY 438
Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
T LI+ +A +++++M + P D + Y+ LL+ + G +E+A +F+ M+
Sbjct: 439 TTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQK 498
Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKAR 482
S+ K D Y YT M+ G VD+ +LF +S GV NV+ +I L R
Sbjct: 499 SEI-KLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKR 554
Score = 112 bits (279), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/314 (24%), Positives = 155/314 (49%), Gaps = 3/314 (0%)
Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
YN+ + Q L L +M+ E +T S+++ +A+ ++M
Sbjct: 123 YNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMV 182
Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
+ G PD +T++ ++ K E ++L +R V G +P+ + + V+ + GD D
Sbjct: 183 EMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTD 242
Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
+L +M++ ++ ++V++NT+++++ K A +LF EM G+ P+ T ++LI
Sbjct: 243 LALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLI 302
Query: 370 K-IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428
+ RW+ DA +L M E K + + +N L++ G EAE+L++DM +
Sbjct: 303 SCLCSYGRWS-DASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDM-IKRS 360
Query: 429 CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLV 488
PD ++Y +++N + +D A ++FE M +V+ LI+ K++R++D
Sbjct: 361 IDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGT 420
Query: 489 RVFGVSIDRGVKPD 502
+F RG+ D
Sbjct: 421 ELFREMSHRGLVGD 434
Score = 99.8 bits (247), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 76/311 (24%), Positives = 145/311 (46%), Gaps = 2/311 (0%)
Query: 149 PHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQ 208
P+ T + + L S W + + + + + P + +N + + +F E+
Sbjct: 293 PNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINP-NLVTFNALIDAFVKEGKFVEAEK 351
Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
L ++M+ I+ D TY++++ + D+A + FE M PD VTY+ ++ +
Sbjct: 352 LYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFC 411
Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
KS +VE+ L+ G D + ++ L + GD D + V ++M S GV P+++
Sbjct: 412 KSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIM 471
Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
Y+ LL+ + GK A +FD M +S + D T +I+ KA D +L+ +
Sbjct: 472 TYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSL 531
Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
+ + YNT+++ L++EA L + MK D P++ +Y ++ + G+
Sbjct: 532 SLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMK-EDGPLPNSGTYNTLIRAHLRDGD 590
Query: 449 VDNAIELFEEM 459
+ EL EM
Sbjct: 591 KAASAELIREM 601
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 105/251 (41%), Gaps = 36/251 (14%)
Query: 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTI 228
K+ F ++ S++ FP + + YN +K ++ + +L EM + D +TY+T+
Sbjct: 383 KAKQMFEFMVSKDCFP-DVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTL 441
Query: 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW 288
I D A + F++M G+ PD +TYS +LD +GK+E+ L +++ S
Sbjct: 442 IQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEI 501
Query: 289 KPDPIAFSVLGKMFGESGDYD------------GIR-----------------------Y 313
K D ++ + + ++G D G++
Sbjct: 502 KLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYA 561
Query: 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYG 373
+L++MK G PN YNTL+ A + G + L EM D T+ + +
Sbjct: 562 LLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVANMLH 621
Query: 374 KARWAKDALEL 384
R K L++
Sbjct: 622 DGRLDKSFLDM 632
>sp|Q9LUR2|PP238_ARATH Putative pentatricopeptide repeat-containing protein At3g16710,
mitochondrial OS=Arabidopsis thaliana GN=At3g16710 PE=3
SV=1
Length = 507
Score = 121 bits (304), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 85/320 (26%), Positives = 156/320 (48%), Gaps = 5/320 (1%)
Query: 191 NVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYK 250
+V K R+ L EQ+ + + NI + ++ C A + +M K
Sbjct: 91 SVIAKMNRYDVVISLFEQMQILGIPPLLCTCNIVMHCVCLSSQPC----RASCFLGKMMK 146
Query: 251 TGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDG 310
G PD VT++++L+ Y ++E+ ++L+++ + G+KP+ + ++ L + ++ +
Sbjct: 147 LGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNH 206
Query: 311 IRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK 370
+ +M + G +PN+V YN L+ + + G+ G A L +M++ + P+ T TALI
Sbjct: 207 AVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALID 266
Query: 371 IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCK 430
+ K +A EL+ M + D Y +L+N GL++EA ++F M+ + C
Sbjct: 267 AFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLME-RNGCY 325
Query: 431 PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRV 490
P+ YT +++ + V++ +++F EMS+ GV N + T LIQ R D V
Sbjct: 326 PNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEV 385
Query: 491 FGVSIDRGVKPDDRLCGCLL 510
F R PD R LL
Sbjct: 386 FNQMSSRRAPPDIRTYNVLL 405
Score = 104 bits (259), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 88/368 (23%), Positives = 157/368 (42%), Gaps = 5/368 (1%)
Query: 139 EAFLRAITEIPHQPTRENALLILNSLKFWQK---SYFFFNWIKSQNLFPMETIFYNVTMK 195
FL + ++ +P +LN W + + F+ I P + Y ++
Sbjct: 138 SCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKP-NVVTYTTLIR 196
Query: 196 SLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMP 255
L R +L N+M +N + +TY+ ++T + +A M K + P
Sbjct: 197 CLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEP 256
Query: 256 DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVL 315
+ +T++A++D + K GK+ E LY + PD + L G D R +
Sbjct: 257 NVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMF 316
Query: 316 QEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA 375
M+ G PN V+Y TL+ K+ + +F EM + G+ + T T LI+ Y
Sbjct: 317 YLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLV 376
Query: 376 RWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYS 435
A E++ +M + P D YN LL+ G VE+A +FE M+ + + +
Sbjct: 377 GRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREM-DINIVT 435
Query: 436 YTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSI 495
YT ++ G V++A +LF + G+ NV+ T +I + I + +F
Sbjct: 436 YTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMK 495
Query: 496 DRGVKPDD 503
+ G P++
Sbjct: 496 EDGFLPNE 503
Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/294 (25%), Positives = 138/294 (46%), Gaps = 1/294 (0%)
Query: 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
F++A++ F RM + +P + ++ +L V AK + + V+SL+E+ G P ++
Sbjct: 64 FNDALDLFTRMVHSRPLPSIIDFTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTCNI 123
Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
+ S L +M LG +P+LV + +LL + A +LFD+++ G
Sbjct: 124 VMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMG 183
Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417
P+ T T LI+ K R A+EL+ +M N + + YN L+ +IG +A
Sbjct: 184 FKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAA 243
Query: 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
L DM + +P+ ++TA+++ + G + A EL+ M ++ V +V LI
Sbjct: 244 WLLRDM-MKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLING 302
Query: 478 LGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ 531
L +D+ ++F + G P++ + L+ + ED K+ + Q
Sbjct: 303 LCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQ 356
Score = 75.9 bits (185), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 110/244 (45%), Gaps = 1/244 (0%)
Query: 259 TYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEM 318
+Y IL + + + L L+ R V S P I F+ L + + YD + + ++M
Sbjct: 50 SYRKILRNGLHNLQFNDALDLFTRMVHSRPLPSIIDFTRLLSVIAKMNRYDVVISLFEQM 109
Query: 319 KSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWA 378
+ LG+ P L N ++ + + +P A +M++ G PD T T+L+ Y
Sbjct: 110 QILGIPPLLCTCNIVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRI 169
Query: 379 KDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTA 438
+DA+ L++++ + + + Y TL+ + A LF M ++ +P+ +Y A
Sbjct: 170 EDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMG-TNGSRPNVVTYNA 228
Query: 439 MLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRG 498
++ G +A L +M + + NV+ T LI K ++ + ++ V I
Sbjct: 229 LVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMS 288
Query: 499 VKPD 502
V PD
Sbjct: 289 VYPD 292
Score = 50.1 bits (118), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 70/153 (45%), Gaps = 2/153 (1%)
Query: 179 SQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCN-L 237
SQ TI Y V ++ + + +++ N+M S D TY+ ++ CN
Sbjct: 355 SQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLD-GLCCNGK 413
Query: 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
++A+ FE M K + + VTY+ I+ K GKVE+ L+ + G KP+ I ++
Sbjct: 414 VEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTT 473
Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
+ F G + ++MK G PN VY
Sbjct: 474 MISGFCRRGLIHEADSLFKKMKEDGFLPNESVY 506
>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330
OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2
Length = 559
Score = 121 bits (304), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/315 (25%), Positives = 152/315 (48%), Gaps = 1/315 (0%)
Query: 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
+ Y V + L L L N+M + +IE D + ++TII + D+A+ F+
Sbjct: 151 VTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKE 210
Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
M G+ P+ VTYS+++ G+ + L + P+ + F+ L F + G
Sbjct: 211 METKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGK 270
Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
+ + +M + P++ YN+L+ + A+ +F+ MV PD T
Sbjct: 271 FVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNT 330
Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
LIK + K++ +D EL+ M D + Y TL+ G + A+++F+ M +SD
Sbjct: 331 LIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQM-VSD 389
Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
PD +Y+ +L+ + G ++ A+E+F+ M + + +++ T +I+ + KA ++DD
Sbjct: 390 GVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDG 449
Query: 488 VRVFGVSIDRGVKPD 502
+F +GVKP+
Sbjct: 450 WDLFCSLSLKGVKPN 464
Score = 120 bits (301), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 95/355 (26%), Positives = 168/355 (47%), Gaps = 9/355 (2%)
Query: 192 VTMKSLR----FGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
VT+ SL G++ L ++MV D IT++T+I N EA+ +R
Sbjct: 81 VTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDR 140
Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
M + G P+ VTY +++ K G ++ +L + A+ + D + F+ + +
Sbjct: 141 MVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRH 200
Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
D + +EM++ G++PN+V Y++L+ + G+ A L +M+E + P+ T A
Sbjct: 201 VDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNA 260
Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
LI + K +A +L + M + D YN+L+N +++A+++FE M +S
Sbjct: 261 LIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFM-VSK 319
Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
C PD +Y ++ + V++ ELF EMS G+ + + T LIQ L D+
Sbjct: 320 DCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNA 379
Query: 488 VRVFGVSIDRGVKPDDRLCGCLLSVVSLCETS--EDVGKVITCLQQANPKLVAFL 540
+VF + GV PD LL LC E +V +Q++ KL ++
Sbjct: 380 QKVFKQMVSDGVPPDIMTYSILLD--GLCNNGKLEKALEVFDYMQKSEIKLDIYI 432
Score = 109 bits (273), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 88/356 (24%), Positives = 169/356 (47%), Gaps = 39/356 (10%)
Query: 184 PMETIF-YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
P+ +IF +N + ++ ++F L+ L +M I + TY+ +I C R + A+
Sbjct: 6 PLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLAL 65
Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL---- 298
+M K G P VT S++L+ Y ++ + ++L ++ V G++PD I F+ L
Sbjct: 66 ALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGL 125
Query: 299 -------------GKM-----------FG-------ESGDYDGIRYVLQEMKSLGVQPNL 327
+M +G + GD D +L +M++ ++ ++
Sbjct: 126 FLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADV 185
Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK-IYGKARWAKDALELWE 386
V++NT+++++ K A +LF EM G+ P+ T ++LI + RW+ DA +L
Sbjct: 186 VIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWS-DASQLLS 244
Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
M E K + + +N L++ G EAE+L +DM + PD ++Y +++N +
Sbjct: 245 DMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDM-IKRSIDPDIFTYNSLINGFCMH 303
Query: 447 GNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
+D A ++FE M ++ LI+ K++R++D +F RG+ D
Sbjct: 304 DRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGD 359
Score = 109 bits (273), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 85/317 (26%), Positives = 147/317 (46%), Gaps = 1/317 (0%)
Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
+ + +N + SL R L EM + I + +TYS++I+C + +A +
Sbjct: 184 DVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLL 243
Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
M + + P+ VT++A++D + K GK E L++ + PD ++ L F
Sbjct: 244 SDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMH 303
Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
D + + + M S P+L YNTL++ K+ + LF EM GL D T
Sbjct: 304 DRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTY 363
Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
T LI+ +A +++++M + P D + Y+ LL+ + G +E+A +F+ M+
Sbjct: 364 TTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQK 423
Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
S+ K D Y YT M+ G VD+ +LF +S GV NV+ +I L R +
Sbjct: 424 SEI-KLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQ 482
Query: 486 DLVRVFGVSIDRGVKPD 502
+ + + G PD
Sbjct: 483 EAYALLKKMKEDGPLPD 499
Score = 99.4 bits (246), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 125/258 (48%), Gaps = 1/258 (0%)
Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS 261
+F E+L ++M+ I+ D TY+++I + D+A + FE M PD TY+
Sbjct: 270 KFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYN 329
Query: 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
++ + KS +VE+ L+ G D + ++ L + GD D + V ++M S
Sbjct: 330 TLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSD 389
Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381
GV P+++ Y+ LL+ + GK A +FD M +S + D T +I+ KA D
Sbjct: 390 GVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDG 449
Query: 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
+L+ + + + YNT+++ L++EA L + MK D PD+ +Y ++
Sbjct: 450 WDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMK-EDGPLPDSGTYNTLIR 508
Query: 442 IYGSGGNVDNAIELFEEM 459
+ G+ + EL EM
Sbjct: 509 AHLRDGDKAASAELIREM 526
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 117/255 (45%), Gaps = 1/255 (0%)
Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
M K+ +P ++ +L AK K + V+SL E+ G + +++L F
Sbjct: 1 MVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQ 60
Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
+L +M LG +P++V ++LL + A +L D+MVE G PD T T
Sbjct: 61 ISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTT 120
Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
LI A +A+ L +RM + + + Y ++N G ++ A L M+ +
Sbjct: 121 LIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAK 180
Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
+ D + +++ +VD+A+ LF+EM G+ NV+ + LI CL R D
Sbjct: 181 I-EADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDA 239
Query: 488 VRVFGVSIDRGVKPD 502
++ I++ + P+
Sbjct: 240 SQLLSDMIEKKINPN 254
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 114/242 (47%), Gaps = 3/242 (1%)
Query: 169 KSYFFFNWIKSQNLFP-METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
K+ F ++ S++ FP ++T YN +K ++ + +L EM + D +TY+T
Sbjct: 308 KAKQMFEFMVSKDCFPDLDT--YNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTT 365
Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
+I D A + F++M G+ PD +TYS +LD +GK+E+ L +++ S
Sbjct: 366 LIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSE 425
Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
K D ++ + + ++G D + + GV+PN+V YNT++ + A
Sbjct: 426 IKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAY 485
Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
+L +M E G PD T LI+ + + + EL MR ++ D + NM
Sbjct: 486 ALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVANML 545
Query: 408 AD 409
D
Sbjct: 546 HD 547
Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 98/215 (45%)
Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
YN + + +Q+ MVS + D TY+T+I + ++ E F M
Sbjct: 293 YNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMS 352
Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
GL+ D VTY+ ++ G + ++++ V+ G PD + +S+L +G +
Sbjct: 353 HRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLE 412
Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
V M+ ++ ++ +Y T++E M KAGK LF + G+ P+ T +I
Sbjct: 413 KALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMI 472
Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
R ++A L ++M+E+ D YNTL+
Sbjct: 473 SGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLI 507
>sp|Q9LN22|PPR54_ARATH Pentatricopeptide repeat-containing protein At1g20300,
mitochondrial OS=Arabidopsis thaliana GN=At1g20300 PE=2
SV=1
Length = 537
Score = 121 bits (303), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/337 (23%), Positives = 167/337 (49%), Gaps = 5/337 (1%)
Query: 168 QKSYFFFNWIKSQNLFPMETIF-YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
+S FFNW S++ + ++ YN + RQF L L + M S +E+ T++
Sbjct: 131 HQSLAFFNWATSRDDYDHKSPHPYNEMIDLSGKVRQFDLAWHLIDLMKSRNVEISIETFT 190
Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
+I R L EA+ F RM G +PD++ +S ++ ++ + E S ++ +
Sbjct: 191 ILIRRYVRAGLASEAVHCFNRMEDYGCVPDKIAFSIVISNLSRKRRASEAQSFFD-SLKD 249
Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
++PD I ++ L + + +G+ V +EMK G++PN+ Y+ +++A+ + G+ A
Sbjct: 250 RFEPDVIVYTNLVRGWCRAGEISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRA 309
Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN- 405
+F +M++SG P+ T L++++ KA + L+++ +M++ D I YN L+
Sbjct: 310 HDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEA 369
Query: 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
C D L E A ++ M + C+ + ++ + +V+ A ++ +M E
Sbjct: 370 HCRDENL-ENAVKVLNTM-IKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKCE 427
Query: 466 INVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
N + L++ ++ D ++++ D+ V+P+
Sbjct: 428 PNTVTYNILMRMFVGSKSTDMVLKMKKEMDDKEVEPN 464
Score = 90.9 bits (224), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/293 (22%), Positives = 130/293 (44%), Gaps = 2/293 (0%)
Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
FF+ +K + F + I Y ++ + E++ EM IE + TYS +I
Sbjct: 243 FFDSLKDR--FEPDVIVYTNLVRGWCRAGEISEAEKVFKEMKLAGIEPNVYTYSIVIDAL 300
Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
RC A + F M +G P+ +T++ ++ V+ K+G+ E+VL +Y + G +PD
Sbjct: 301 CRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCEPDT 360
Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
I ++ L + + + VL M + N +NT+ + K A ++ +
Sbjct: 361 ITYNFLIEAHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSK 420
Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
M+E+ P+ T L++++ ++ L++ + M + + + Y L+ M +G
Sbjct: 421 MMEAKCEPNTVTYNILMRMFVGSKSTDMVLKMKKEMDDKEVEPNVNTYRLLVTMFCGMGH 480
Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
A +LF++M P Y +L G + EL E+M + G+
Sbjct: 481 WNNAYKLFKEMVEEKCLTPSLSLYEMVLAQLRRAGQLKKHEELVEKMIQKGLV 533
Score = 85.1 bits (209), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/320 (22%), Positives = 144/320 (45%), Gaps = 22/320 (6%)
Query: 257 EVTYSAILDVYAKSGKVEEVLSLYERGVASGW--------KPDPIAFSVLGKMFGESGDY 308
+V+ S + V K G V + L++ W P ++ + + G+ +
Sbjct: 108 QVSPSVVRCVIEKCGSVRHGIPLHQSLAFFNWATSRDDYDHKSPHPYNEMIDLSGKVRQF 167
Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
D +++ MKS V+ ++ + L+ +AG A F+ M + G PD+ + +
Sbjct: 168 DLAWHLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHCFNRMEDYGCVPDKIAFSIV 227
Query: 369 IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428
I + R A +A ++ +++ P D I+Y L+ G + EAE++F++MKL+
Sbjct: 228 ISNLSRKRRASEAQSFFDSLKDRFEP-DVIVYTNLVRGWCRAGEISEAEKVFKEMKLAGI 286
Query: 429 CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLV 488
+P+ Y+Y+ +++ G + A ++F +M + G A N + L++ KA R + ++
Sbjct: 287 -EPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVL 345
Query: 489 RVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNST 548
+V+ G +PD L+ E E+ KV+ + + E N++
Sbjct: 346 QVYNQMKKLGCEPDTITYNFLIEAHCRDENLENAVKVLNTMIKKK---------CEVNAS 396
Query: 549 GFENIKEEFRNVIKDTEVDA 568
F I FR + K +V+
Sbjct: 397 TFNTI---FRYIEKKRDVNG 413
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 120 bits (302), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 79/317 (24%), Positives = 146/317 (46%), Gaps = 5/317 (1%)
Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
TI T + G +L++++ + + ++ +TY+ ++ + DEAI++
Sbjct: 243 TILIEATCRDSGVGHAMKLLDEMRDRGCTPDV----VTYNVLVNGICKEGRLDEAIKFLN 298
Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
M +G P+ +T++ IL +G+ + L + G+ P + F++L G
Sbjct: 299 DMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKG 358
Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
+L++M G QPN + YN LL K K A + MV G PD T
Sbjct: 359 LLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYN 418
Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
++ K +DA+E+ ++ I YNT+++ A G +A +L ++M+
Sbjct: 419 TMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAK 478
Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
D KPD +Y++++ G VD AI+ F E +G+ N + ++ L K+R+ D
Sbjct: 479 DL-KPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDR 537
Query: 487 LVRVFGVSIDRGVKPDD 503
+ I+RG KP++
Sbjct: 538 AIDFLVFMINRGCKPNE 554
Score = 108 bits (271), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/295 (24%), Positives = 138/295 (46%), Gaps = 8/295 (2%)
Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
F N + S P I +N+ ++S+ ++ E+L +M+ +T++ +I
Sbjct: 296 FLNDMPSSGCQP-NVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFL 354
Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
R L AI+ E+M + G P+ ++Y+ +L + K K++ + ER V+ G PD
Sbjct: 355 CRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDI 414
Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
+ ++ + + G + +L ++ S G P L+ YNT+++ + KAGK G A L DE
Sbjct: 415 VTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDE 474
Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT-LLNMCADIG 411
M L PD T ++L+ + +A++ + + + +N+ +L +C
Sbjct: 475 MRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKS-- 532
Query: 412 LVEEAERL--FEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
+ +R F ++ CKP+ SYT ++ G A+EL E+ G+
Sbjct: 533 --RQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNELCNKGL 585
Score = 100 bits (248), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 78/326 (23%), Positives = 145/326 (44%), Gaps = 6/326 (1%)
Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
D I +T+I R +A + E + +G +PD +TY+ ++ Y K+G++ LS+
Sbjct: 136 DIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVL 195
Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
+R S PD + ++ + + +SG VL M P+++ Y L+EA +
Sbjct: 196 DRMSVS---PDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRD 252
Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
G A L DEM + G TPD T L+ K +A++ M + + I +
Sbjct: 253 SGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITH 312
Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
N +L G +AE+L DM + P ++ ++N G + AI++ E+M
Sbjct: 313 NIILRSMCSTGRWMDAEKLLADMLRKGF-SPSVVTFNILINFLCRKGLLGRAIDILEKMP 371
Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSE 520
+ G N + L+ K +++D + + RG PD +L+ + E
Sbjct: 372 QHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVE 431
Query: 521 DVGKVITCL--QQANPKLVAFLNLIE 544
D +++ L + +P L+ + +I+
Sbjct: 432 DAVEILNQLSSKGCSPVLITYNTVID 457
Score = 95.1 bits (235), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/289 (24%), Positives = 134/289 (46%), Gaps = 4/289 (1%)
Query: 214 VSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKV 273
V++ L+++ + + R +E ++ E M G +PD + + ++ + + GK
Sbjct: 94 VNSSFALEDVESNNHLRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKT 153
Query: 274 EEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTL 333
+ + E SG PD I ++V+ + ++G+ + VL M V P++V YNT+
Sbjct: 154 RKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMS---VSPDVVTYNTI 210
Query: 334 LEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKW 393
L ++ +GK A + D M++ PD T T LI+ + A++L + MR+
Sbjct: 211 LRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGC 270
Query: 394 PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAI 453
D + YN L+N G ++EA + DM S C+P+ ++ +L S G +A
Sbjct: 271 TPDVVTYNVLVNGICKEGRLDEAIKFLNDMP-SSGCQPNVITHNIILRSMCSTGRWMDAE 329
Query: 454 ELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
+L +M G + +V+ LI L + + + + G +P+
Sbjct: 330 KLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPN 378
Score = 41.2 bits (95), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 65/165 (39%), Gaps = 38/165 (23%)
Query: 173 FFNWIKSQNLFPMETIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITC 231
N + S+ P+ I YN + L + G+ + I +L +EM + +++ D ITYS+++
Sbjct: 436 ILNQLSSKGCSPV-LITYNTVIDGLAKAGKTGKAI-KLLDEMRAKDLKPDTITYSSLVGG 493
Query: 232 AKRCNLFDEAIEWFERMYKTGLMPDEVT-------------------------------- 259
R DEAI++F + G+ P+ VT
Sbjct: 494 LSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPN 553
Query: 260 ---YSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKM 301
Y+ +++ A G +E L L G A V GKM
Sbjct: 554 ETSYTILIEGLAYEGMAKEALELLNELCNKGLMKKSSAEQVAGKM 598
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 120 bits (301), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 91/331 (27%), Positives = 164/331 (49%), Gaps = 5/331 (1%)
Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTII-TC 231
F +K FP Y V +KSL + L EM I+ + TY+ +I +
Sbjct: 310 LFVKMKDDECFPTVRT-YTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSL 368
Query: 232 AKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291
+C F++A E +M + GLMP+ +TY+A+++ Y K G +E+ + + E + P+
Sbjct: 369 CSQCK-FEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPN 427
Query: 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351
++ L K + +S + + VL +M V P++V YN+L++ ++G A L
Sbjct: 428 TRTYNELIKGYCKSNVHKAMG-VLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLS 486
Query: 352 EMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411
M + GL PD+ T T++I K++ ++A +L++ + + + ++Y L++ G
Sbjct: 487 LMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAG 546
Query: 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC 471
V+EA + E M LS C P++ ++ A+++ + G + A L E+M ++G+ V
Sbjct: 547 KVDEAHLMLEKM-LSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTD 605
Query: 472 TCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
T LI L K D F + G KPD
Sbjct: 606 TILIHRLLKDGDFDHAYSRFQQMLSSGTKPD 636
Score = 102 bits (255), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 88/370 (23%), Positives = 155/370 (41%), Gaps = 55/370 (14%)
Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
N+M+ ++ D +TY+++I R FD A M GL+PD+ TY++++D KS
Sbjct: 451 NKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKS 510
Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330
+VEE L++ G P+ + ++ L + ++G D +L++M S PN + +
Sbjct: 511 KRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTF 570
Query: 331 NTLLEAMGKAG-------------KPGL----------------------ARSLFDEMVE 355
N L+ + G K GL A S F +M+
Sbjct: 571 NALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLS 630
Query: 356 SGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEE 415
SG PD T T I+ Y + DA ++ +MREN D Y++L+ D+G
Sbjct: 631 SGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNF 690
Query: 416 AERLFEDMKLSDYCKPDNYSYTAMLNI-----YGSGGN-------------VDNAIELFE 457
A + + M+ + C+P +++ +++ YG D +EL E
Sbjct: 691 AFDVLKRMRDTG-CEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLE 749
Query: 458 EMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFG-VSIDRGVKPDDRLCGCLLSVVSLC 516
+M E V N LI + + + +VF + + G+ P + + LLS
Sbjct: 750 KMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKL 809
Query: 517 ETSEDVGKVI 526
+ + KV+
Sbjct: 810 KKHNEAAKVV 819
Score = 94.4 bits (233), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 77/297 (25%), Positives = 138/297 (46%), Gaps = 6/297 (2%)
Query: 210 ANEMVSNEIEL----DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
AN+ VS +E D TY+++I + D A + F M G +EV Y+ ++
Sbjct: 237 ANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIH 296
Query: 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325
+ +++E + L+ + P ++VL K S +++EM+ G++P
Sbjct: 297 GLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKP 356
Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
N+ Y L++++ K AR L +M+E GL P+ T ALI Y K +DA+++
Sbjct: 357 NIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVV 416
Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445
E M K + YN L+ V +A + M L PD +Y ++++
Sbjct: 417 ELMESRKLSPNTRTYNELIKGYCKSN-VHKAMGVLNKM-LERKVLPDVVTYNSLIDGQCR 474
Query: 446 GGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
GN D+A L M++ G+ + T +I L K++R+++ +F +GV P+
Sbjct: 475 SGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPN 531
Score = 92.8 bits (229), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 87/360 (24%), Positives = 168/360 (46%), Gaps = 10/360 (2%)
Query: 190 YNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERM 248
YN + SL RFG ++ +Q+ EM+ +++ + TY+ ++ + +EA ++ ++
Sbjct: 186 YNTLLNSLARFGLVDEM-KQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKI 244
Query: 249 YKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY 308
+ GL PD TY++++ Y + ++ ++ G + + +A++ L +
Sbjct: 245 VEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRI 304
Query: 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368
D + +MK P + Y L++++ + + A +L EM E+G+ P+ T T L
Sbjct: 305 DEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVL 364
Query: 369 IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428
I + A EL +M E + I YN L+N G++E+A + E M+ S
Sbjct: 365 IDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELME-SRK 423
Query: 429 CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLV 488
P+ +Y ++ Y NV A+ + +M E V +V+ LI ++ D
Sbjct: 424 LSPNTRTYNELIKGY-CKSNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAY 482
Query: 489 RVFGVSIDRGVKPDDRLCGCLLSVVSLCETS--EDVGKVITCLQQ--ANPKLVAFLNLIE 544
R+ + DRG+ PD ++ SLC++ E+ + L+Q NP +V + LI+
Sbjct: 483 RLLSLMNDRGLVPDQWTYTSMID--SLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALID 540
Score = 82.8 bits (203), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 70/313 (22%), Positives = 137/313 (43%), Gaps = 18/313 (5%)
Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
+ +M+S +++T++ +I EA E+M K GL P T + ++
Sbjct: 554 MLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLL 613
Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
K G + S +++ ++SG KPD ++ + + G ++ +M+ GV P+L
Sbjct: 614 KDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLF 673
Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI-----YGKARWAKDAL- 382
Y++L++ G G+ A + M ++G P + T +LIK YGK + ++ L
Sbjct: 674 TYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELC 733
Query: 383 ------------ELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCK 430
EL E+M E+ + Y L+ ++G + AE++F+ M+ ++
Sbjct: 734 AMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGIS 793
Query: 431 PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRV 490
P + A+L+ + A ++ ++M +G + C LI L K + V
Sbjct: 794 PSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSV 853
Query: 491 FGVSIDRGVKPDD 503
F + G D+
Sbjct: 854 FQNLLQCGYYEDE 866
Score = 82.4 bits (202), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 85/366 (23%), Positives = 154/366 (42%), Gaps = 27/366 (7%)
Query: 167 WQKSYFFFNWIKSQNLFPME---TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNI 223
+ +Y + + + L P + T + KS R L + L + V+ + +
Sbjct: 478 FDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNV----V 533
Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
Y+ +I + DEA E+M +P+ +T++A++ GK++E L E+
Sbjct: 534 MYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKM 593
Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
V G +P ++L + GD+D Q+M S G +P+ Y T ++ + G+
Sbjct: 594 VKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRL 653
Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMR----ENKWPMDFIL 399
A + +M E+G++PD T ++LIK YG A ++ +RMR E L
Sbjct: 654 LDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSL 713
Query: 400 YNTLLNM------------CADIGLVE--EAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445
LL M CA ++E L E M + P+ SY ++
Sbjct: 714 IKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKM-VEHSVTPNAKSYEKLILGICE 772
Query: 446 GGNVDNAIELFEEMSE-LGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR 504
GN+ A ++F+ M G++ + + L+ C K ++ ++ +V I G P
Sbjct: 773 VGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLE 832
Query: 505 LCGCLL 510
C L+
Sbjct: 833 SCKVLI 838
Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 61/116 (52%), Gaps = 6/116 (5%)
Query: 381 ALELWERMREN-----KWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYS 435
L+L +M ++ K+ + YNTLLN A GLV+E ++++ +M L D P+ Y+
Sbjct: 162 VLDLCRKMNKDERFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEM-LEDKVCPNIYT 220
Query: 436 YTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
Y M+N Y GNV+ A + ++ E G+ + T LI + + +D +VF
Sbjct: 221 YNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVF 276
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 70/170 (41%), Gaps = 5/170 (2%)
Query: 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKV---EEVLSLYERGVASGWKPDPIA 294
FD +E E+M + + P+ +Y ++ + G + E+V +R G P +
Sbjct: 741 FDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRN--EGISPSELV 798
Query: 295 FSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMV 354
F+ L + ++ V+ +M +G P L L+ + K G+ S+F ++
Sbjct: 799 FNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLL 858
Query: 355 ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
+ G DE +I GK + EL+ M +N Y+ L+
Sbjct: 859 QCGYYEDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCKFSSQTYSLLI 908
Score = 40.0 bits (92), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 35/170 (20%), Positives = 73/170 (42%), Gaps = 1/170 (0%)
Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKT-GLMPDEVTY 260
+F + +L +MV + + + +Y +I A + F+ M + G+ P E+ +
Sbjct: 740 EFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVF 799
Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
+A+L K K E + + + G P + VL + G+ + V Q +
Sbjct: 800 NALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLLQ 859
Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK 370
G + + + +++ +GK G LF+ M ++G +T + LI+
Sbjct: 860 CGYYEDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCKFSSQTYSLLIE 909
>sp|P0C7R3|PP106_ARATH Pentatricopeptide repeat-containing protein At1g64583,
mitochondrial OS=Arabidopsis thaliana GN=At1g64583 PE=2
SV=1
Length = 512
Score = 120 bits (300), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 83/343 (24%), Positives = 169/343 (49%), Gaps = 5/343 (1%)
Query: 161 LNSLKFWQKSYFFFNWIKSQNLFPMETIF-YNVTMKSLRFGRQFQLIEQLANEMVSNEIE 219
L+S++F FF + SQ P+ +I + + + R+++ + + +M I
Sbjct: 47 LHSIRFEDAFALFFEMVHSQ---PLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGIS 103
Query: 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSL 279
D +++ +I C RC+ A+ +M K G P VT+ ++L + ++ + SL
Sbjct: 104 HDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSL 163
Query: 280 YERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339
V SG++P+ + ++ L ++G+ + +L EM+ G+ ++V YNTLL +
Sbjct: 164 VILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCY 223
Query: 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399
+G+ A + +M++ + PD T TALI ++ K +A EL++ M ++ + +
Sbjct: 224 SGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVT 283
Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459
YN+++N G + +A++ F D+ S C P+ +Y +++ + VD ++LF+ M
Sbjct: 284 YNSIINGLCMHGRLYDAKKTF-DLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRM 342
Query: 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
S G ++ LI + ++ + +F + R V PD
Sbjct: 343 SCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPD 385
Score = 112 bits (280), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 86/319 (26%), Positives = 149/319 (46%), Gaps = 9/319 (2%)
Query: 192 VTMKSLRFGRQFQLIEQLANE------MVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
VT SL G F L+ ++ + MV + E + + Y+T+I + + A+E
Sbjct: 142 VTFGSLLHG--FCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELL 199
Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
M K GL D VTY+ +L SG+ + + + PD + F+ L +F +
Sbjct: 200 NEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQ 259
Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
G+ D + + +EM V PN V YN+++ + G+ A+ FD M G P+ T
Sbjct: 260 GNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTY 319
Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
LI + K R + ++L++RM + D YNTL++ +G + A +F M +
Sbjct: 320 NTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWM-V 378
Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485
S PD ++ +L+ G +++A+ F++M E I ++ +I L KA +++
Sbjct: 379 SRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVE 438
Query: 486 DLVRVFGVSIDRGVKPDDR 504
+F GVKPD R
Sbjct: 439 KAWELFCRLPVEGVKPDAR 457
Score = 96.7 bits (239), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 135/307 (43%), Gaps = 6/307 (1%)
Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
+ YN + L + + +L NEM + D +TY+T++T + +A
Sbjct: 176 VVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLR 235
Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAF-SVLGKMFGES 305
M K + PD VT++A++DV+ K G ++E LY+ + S P+ + + S++ +
Sbjct: 236 DMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHG 295
Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
YD + M S G PN+V YNTL+ K LF M G D T
Sbjct: 296 RLYDA-KKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTY 354
Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
LI Y + + AL+++ M + D I + LL+ G +E A F+DM+
Sbjct: 355 NTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRE 414
Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL---GKAR 482
S+ +Y M++ V+ A ELF + GV + T +I L G R
Sbjct: 415 SEK-YIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRR 473
Query: 483 RIDDLVR 489
D+L+R
Sbjct: 474 EADELIR 480
Score = 70.1 bits (170), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 80/168 (47%)
Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
+TY+T+I+ + + DE ++ F+RM G D TY+ ++ Y + GK+ L ++
Sbjct: 317 VTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCW 376
Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
V+ PD I +L +G+ + +M+ +V YN ++ + KA K
Sbjct: 377 MVSRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKADK 436
Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
A LF + G+ PD +T T +I K ++A EL RM+E
Sbjct: 437 VEKAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELIRRMKE 484
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/271 (21%), Positives = 114/271 (42%), Gaps = 36/271 (13%)
Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
+ S + E+ +L+ V S P + F+ L Y+ + Y Q+M+ G+ +
Sbjct: 46 FLHSIRFEDAFALFFEMVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHD 105
Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
L + L+ + + A S+ +M++ G P T +L+ + DA L
Sbjct: 106 LYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVI 165
Query: 387 RMRENKWPMDFILYNTLLN-MC---------------------ADI-------------G 411
M ++ + + ++YNTL++ +C AD+ G
Sbjct: 166 LMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSG 225
Query: 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC 471
+A R+ DM + PD ++TA+++++ GN+D A EL++EM + V N +
Sbjct: 226 RWSDAARMLRDM-MKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTY 284
Query: 472 TCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
+I L R+ D + F + +G P+
Sbjct: 285 NSIINGLCMHGRLYDAKKTFDLMASKGCFPN 315
>sp|Q8L844|PP413_ARATH Pentatricopeptide repeat-containing protein At5g42310,
mitochondrial OS=Arabidopsis thaliana GN=At5g42310 PE=2
SV=1
Length = 709
Score = 120 bits (300), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 85/302 (28%), Positives = 139/302 (46%), Gaps = 2/302 (0%)
Query: 200 GRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVT 259
GR + E L E+ + I+ Y+ ++ + +A M K G+ PDE T
Sbjct: 318 GRTLE-AEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHT 376
Query: 260 YSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMK 319
YS ++D Y +G+ E + + A +P+ FS L F + G++ VL+EMK
Sbjct: 377 YSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMK 436
Query: 320 SLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAK 379
S+GV+P+ YN +++ GK A + FD M+ G+ PD T LI + K
Sbjct: 437 SIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHI 496
Query: 380 DALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAM 439
A E++E M YN ++N D ++ +RL MK S P+ ++T +
Sbjct: 497 VAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMK-SQGILPNVVTHTTL 555
Query: 440 LNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGV 499
+++YG G ++AIE EEM +G+ + LI + + V F V G+
Sbjct: 556 VDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGL 615
Query: 500 KP 501
KP
Sbjct: 616 KP 617
Score = 119 bits (298), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 77/269 (28%), Positives = 139/269 (51%), Gaps = 8/269 (2%)
Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLA---NEMVSNEIELDNI 223
WQK++ +KS + P + FYNV + + FG+ F ++ + M+S IE D +
Sbjct: 425 WQKTFQVLKEMKSIGVKP-DRQFYNVVIDT--FGK-FNCLDHAMTTFDRMLSEGIEPDRV 480
Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
T++T+I C + A E FE M + G +P TY+ +++ Y + +++ L +
Sbjct: 481 TWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKM 540
Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
+ G P+ + + L ++G+SG ++ L+EMKS+G++P+ +YN L+ A + G
Sbjct: 541 KSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLS 600
Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
A + F M GL P L +LI +G+ R +A + + M+EN D + Y TL
Sbjct: 601 EQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTL 660
Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPD 432
+ + ++ ++E+M +S CKPD
Sbjct: 661 MKALIRVDKFQKVPVVYEEMIMSG-CKPD 688
Score = 118 bits (295), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/323 (27%), Positives = 148/323 (45%), Gaps = 5/323 (1%)
Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
T +II+ EA FE + ++G+ P Y+A+L Y K+G +++ S+
Sbjct: 306 TLVSIISALADSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEM 365
Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
G PD +S+L + +G ++ R VL+EM++ VQPN V++ LL G+
Sbjct: 366 EKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEW 425
Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
+ EM G+ PD + +I +GK A+ ++RM D + +NTL
Sbjct: 426 QKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTL 485
Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
++ G AE +FE M+ C P +Y M+N YG D+ L +M G
Sbjct: 486 IDCHCKHGRHIVAEEMFEAMERRG-CLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQG 544
Query: 464 VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVS---LCETSE 520
+ NV+ T L+ GK+ R +D + G+KP + L++ + L E +
Sbjct: 545 ILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAV 604
Query: 521 DVGKVITCLQQANPKLVAFLNLI 543
+ +V+T P L+A +LI
Sbjct: 605 NAFRVMTS-DGLKPSLLALNSLI 626
Score = 109 bits (273), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 87/350 (24%), Positives = 152/350 (43%), Gaps = 43/350 (12%)
Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
W+ + +++ ++ P +F + + R ++Q Q+ EM S ++ D Y+
Sbjct: 390 WESARIVLKEMEAGDVQPNSFVFSRL-LAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYN 448
Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK---VEEVLSLYERG 283
+I + N D A+ F+RM G+ PD VT++ ++D + K G+ EE+ ER
Sbjct: 449 VVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMER- 507
Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
G P ++++ +G+ +D ++ +L +MKS G+ PN+V + TL++ GK+G+
Sbjct: 508 --RGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRF 565
Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
A +EM GL P ALI Y
Sbjct: 566 NDAIECLEEMKSVGLKPSSTMYNALINAY------------------------------- 594
Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
A GL E+A F M SD KP + +++N +G A + + M E G
Sbjct: 595 ----AQRGLSEQAVNAFRVMT-SDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKENG 649
Query: 464 VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVV 513
V +V+ T L++ L + + + V+ I G KPD + L S +
Sbjct: 650 VKPDVVTYTTLMKALIRVDKFQKVPVVYEEMIMSGCKPDRKARSMLRSAL 699
Score = 103 bits (257), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 78/335 (23%), Positives = 155/335 (46%), Gaps = 8/335 (2%)
Query: 170 SYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTII 229
+Y +W++ NL + Y++ + +L GR +L E ++S + L +TY+ +I
Sbjct: 150 AYAVVSWLQKHNLCFSYELLYSILIHAL--GRSEKLYEAF---LLSQKQTLTPLTYNALI 204
Query: 230 TCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV--LSLYERGVASG 287
R N ++A+ +M + G D V YS ++ +S K++ V L LY+
Sbjct: 205 GACARNNDIEKALNLIAKMRQDGYQSDFVNYSLVIQSLTRSNKIDSVMLLRLYKEIERDK 264
Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
+ D + + F +SGD +L ++ G+ +++ A+ +G+ A
Sbjct: 265 LELDVQLVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSIISALADSGRTLEAE 324
Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
+LF+E+ +SG+ P + AL+K Y K KDA + M + D Y+ L++
Sbjct: 325 ALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAY 384
Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
+ G E A + ++M+ D +P+++ ++ +L + G ++ +EM +GV +
Sbjct: 385 VNAGRWESARIVLKEMEAGD-VQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPD 443
Query: 468 VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
+I GK +D + F + G++PD
Sbjct: 444 RQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPD 478
Score = 35.0 bits (79), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 61/331 (18%), Positives = 119/331 (35%), Gaps = 54/331 (16%)
Query: 257 EVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQ 316
E+ YS ++ +S K+ E L ++ + P+ ++ L + D + ++
Sbjct: 167 ELLYSILIHALGRSEKLYEAFLLSQKQTLT-----PLTYNALIGACARNNDIEKALNLIA 221
Query: 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPG--LARSLFDEMVESGLTPDEKTLTALIKIYGK 374
+M+ G Q + V Y+ +++++ ++ K + L+ E+ L D + + +I + K
Sbjct: 222 KMRQDGYQSDFVNYSLVIQSLTRSNKIDSVMLLRLYKEIERDKLELDVQLVNDIIMGFAK 281
Query: 375 ARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNY 434
+ AL+L L M GL + L
Sbjct: 282 SGDPSKALQL-------------------LGMAQATGLSAKTATL--------------- 307
Query: 435 SYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVS 494
++++ G A LFEE+ + G+ L++ K + D +
Sbjct: 308 --VSIISALADSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEM 365
Query: 495 IDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN--PKLVAFLNLIEDNSTGFEN 552
RGV PD+ L+ E V+ ++ + P F L+ GF +
Sbjct: 366 EKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLL----AGFRD 421
Query: 553 IKE-----EFRNVIKDTEVDARRPFCNCLID 578
E + +K V R F N +ID
Sbjct: 422 RGEWQKTFQVLKEMKSIGVKPDRQFYNVVID 452
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 119 bits (299), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 131/259 (50%), Gaps = 1/259 (0%)
Query: 207 EQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266
E+L +EM+ I+ D TYS++I + DEA FE M P+ VTYS ++
Sbjct: 348 EKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKG 407
Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN 326
+ K+ +VEE + L+ G + + ++ L F ++ D D + V ++M S+GV PN
Sbjct: 408 FCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPN 467
Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWE 386
++ YN LL+ + K GK A +F+ + S + PD T +I+ KA +D EL+
Sbjct: 468 ILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFC 527
Query: 387 RMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446
+ + I YNT+++ G EEA+ L + MK D P++ +Y ++
Sbjct: 528 NLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMK-EDGPLPNSGTYNTLIRARLRD 586
Query: 447 GNVDNAIELFEEMSELGVA 465
G+ + + EL +EM G A
Sbjct: 587 GDREASAELIKEMRSCGFA 605
Score = 117 bits (293), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 94/364 (25%), Positives = 174/364 (47%), Gaps = 40/364 (10%)
Query: 172 FFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITC 231
F + +KS+ FP + +N + ++ +F+L+ L +M + I D TYS I C
Sbjct: 70 LFGDMVKSRP-FP-SIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINC 127
Query: 232 AKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291
R + A+ +M K G PD VT S++L+ Y S ++ + ++L ++ V G+KPD
Sbjct: 128 FCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPD 187
Query: 292 PIAFSVL--------------------------------GKMFG---ESGDYDGIRYVLQ 316
F+ L G + + GD D +L+
Sbjct: 188 TFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLK 247
Query: 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK-IYGKA 375
+M+ ++ ++V+YNT+++ + K A +LF EM G+ PD T ++LI +
Sbjct: 248 KMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYG 307
Query: 376 RWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYS 435
RW+ DA L M E K + + ++ L++ G + EAE+L+++M + PD ++
Sbjct: 308 RWS-DASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEM-IKRSIDPDIFT 365
Query: 436 YTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSI 495
Y++++N + +D A +FE M NV+ + LI+ KA+R+++ + +F
Sbjct: 366 YSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMS 425
Query: 496 DRGV 499
RG+
Sbjct: 426 QRGL 429
Score = 114 bits (285), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 82/290 (28%), Positives = 138/290 (47%), Gaps = 1/290 (0%)
Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
+ + YN + L + L EM + I D TYS++I+C + +A
Sbjct: 257 DVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLL 316
Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
M + + P+ VT+SA++D + K GK+ E LY+ + PD +S L F
Sbjct: 317 SDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMH 376
Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
D +++ + M S PN+V Y+TL++ KA + LF EM + GL + T
Sbjct: 377 DRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTY 436
Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
T LI + +AR +A ++++M + + YN LL+ G + +A +FE ++
Sbjct: 437 TTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQR 496
Query: 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLI 475
S +PD Y+Y M+ G V++ ELF +S GV+ NV+ +I
Sbjct: 497 STM-EPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMI 545
Score = 106 bits (264), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 90/368 (24%), Positives = 169/368 (45%), Gaps = 11/368 (2%)
Query: 209 LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268
L ++MV + D +TY T++ + D A+ ++M K + D V Y+ I+D
Sbjct: 210 LVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLC 269
Query: 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328
K +++ L+L+ G +PD +S L G + +L +M + PN+V
Sbjct: 270 KYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVV 329
Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388
++ L++A K GK A L+DEM++ + PD T ++LI + +A ++E M
Sbjct: 330 TFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELM 389
Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
+ + Y+TL+ VEE LF +M + +YT +++ + +
Sbjct: 390 ISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLV-GNTVTYTTLIHGFFQARD 448
Query: 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGC 508
DNA +F++M +GV N++ L+ L K ++ + VF ++PD
Sbjct: 449 CDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNI 508
Query: 509 LLSVVSLCETSEDVGKVITC---LQQANPKLVAFLNLIEDNSTGF--ENIKEEFRNVIKD 563
++ + ED G + C L+ +P ++A+ +I +GF + KEE +++K
Sbjct: 509 MIEGMCKAGKVED-GWELFCNLSLKGVSPNVIAYNTMI----SGFCRKGSKEEADSLLKK 563
Query: 564 TEVDARRP 571
+ D P
Sbjct: 564 MKEDGPLP 571
Score = 99.8 bits (247), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 122/264 (46%), Gaps = 1/264 (0%)
Query: 239 DEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
D+A++ F M K+ P V ++ +L AK K E V+SL E+ G D +S+
Sbjct: 65 DDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIF 124
Query: 299 GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
F VL +M LG +P++V ++LL + + A +L D+MVE G
Sbjct: 125 INCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGY 184
Query: 359 TPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAER 418
PD T T LI A +A+ L ++M + D + Y T++N G ++ A
Sbjct: 185 KPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALS 244
Query: 419 LFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL 478
L + M+ + D Y +++ ++D+A+ LF EM G+ +V + LI CL
Sbjct: 245 LLKKME-KGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCL 303
Query: 479 GKARRIDDLVRVFGVSIDRGVKPD 502
R D R+ I+R + P+
Sbjct: 304 CNYGRWSDASRLLSDMIERKINPN 327
Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/280 (22%), Positives = 135/280 (48%), Gaps = 1/280 (0%)
Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
+ ++ +++ + N F+ I E+M G+ D TYS ++ + + ++ L++ +
Sbjct: 84 VEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAK 143
Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
+ G++PD + S L + S ++ +M +G +P+ + TL+ + K
Sbjct: 144 MMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNK 203
Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
A +L D+MV+ G PD T ++ K AL L ++M + K D ++YNT
Sbjct: 204 ASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNT 263
Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
+++ +++A LF +M + +PD ++Y+++++ + G +A L +M E
Sbjct: 264 IIDGLCKYKHMDDALNLFTEMD-NKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIER 322
Query: 463 GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
+ NV+ + LI K ++ + +++ I R + PD
Sbjct: 323 KINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPD 362
Score = 79.7 bits (195), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 111/236 (47%), Gaps = 1/236 (0%)
Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
F + S++ FP + Y+ +K ++ + +L EM + + +TY+T+I
Sbjct: 386 FELMISKDCFP-NVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFF 444
Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
+ D A F++M G+ P+ +TY+ +LD K+GK+ + + ++E S +PD
Sbjct: 445 QARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIY 504
Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
++++ + ++G + + + GV PN++ YNT++ + G A SL +M
Sbjct: 505 TYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKM 564
Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCAD 409
E G P+ T LI+ + + + EL + MR + D + NM D
Sbjct: 565 KEDGPLPNSGTYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNMLHD 620
Score = 67.8 bits (164), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 91/206 (44%)
Query: 179 SQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLF 238
SQ T+ Y + R + + +MVS + + +TY+ ++ +
Sbjct: 425 SQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKL 484
Query: 239 DEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
+A+ FE + ++ + PD TY+ +++ K+GKVE+ L+ G P+ IA++ +
Sbjct: 485 AKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTM 544
Query: 299 GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
F G + +L++MK G PN YNTL+ A + G + L EM G
Sbjct: 545 ISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIKEMRSCGF 604
Query: 359 TPDEKTLTALIKIYGKARWAKDALEL 384
D T+ + + R K L++
Sbjct: 605 AGDASTIGLVTNMLHDGRLDKSFLDM 630
>sp|Q9SI78|PPR93_ARATH Pentatricopeptide repeat-containing protein At1g62720
OS=Arabidopsis thaliana GN=At1g62720 PE=2 SV=1
Length = 485
Score = 119 bits (298), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 83/342 (24%), Positives = 164/342 (47%), Gaps = 19/342 (5%)
Query: 165 KFWQKSY--------------FFFNWIKSQNLFPMETIF-YNVTMKSLRFGRQFQLIEQL 209
+FW +++ F I+S+ P+ +I ++ + + + + L+ L
Sbjct: 35 RFWGRTFSTKRSSMNLEEEIDLFCKMIQSR---PLPSIVDFSKVLSKIAKSKNYDLVISL 91
Query: 210 ANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAK 269
+ M I D +Y+ +I C RC+ F A+ +M K G PD VT S++++ + +
Sbjct: 92 FHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQ 151
Query: 270 SGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVV 329
+V + + L + G++PD + ++ + + G + + M+ GV+ + V
Sbjct: 152 GNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVT 211
Query: 330 YNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMR 389
YN+L+ + +G+ A L +MV + P+ T TA+I ++ K +A++L+E M
Sbjct: 212 YNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMT 271
Query: 390 ENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNV 449
D YN+L+N G V+EA+++ D+ ++ C PD +Y ++N + V
Sbjct: 272 RRCVDPDVFTYNSLINGLCMHGRVDEAKQML-DLMVTKGCLPDVVTYNTLINGFCKSKRV 330
Query: 450 DNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
D +LF EM++ G+ + + +IQ +A R D +F
Sbjct: 331 DEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIF 372
Score = 110 bits (275), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 85/318 (26%), Positives = 152/318 (47%), Gaps = 14/318 (4%)
Query: 192 VTMKSLRFG-----RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
VT+ SL G R F I+ L ++M D + Y+TII + + L ++A+E F+
Sbjct: 140 VTVSSLINGFCQGNRVFDAID-LVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFD 198
Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
RM + G+ D VTY++++ SG+ + L V P+ I F+ + +F + G
Sbjct: 199 RMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEG 258
Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
+ + +EM V P++ YN+L+ + G+ A+ + D MV G PD T
Sbjct: 259 KFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYN 318
Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
LI + K++ + +L+ M + D I YNT++ G + A+ +F M
Sbjct: 319 TLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMD-- 376
Query: 427 DYCKPDNYSYTAMLNIYGSGGN--VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484
+P+ +Y+ +L YG N V+ A+ LFE M + + +++ +I + K +
Sbjct: 377 --SRPNIRTYSILL--YGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNV 432
Query: 485 DDLVRVFGVSIDRGVKPD 502
+D +F +G+KPD
Sbjct: 433 EDAWDLFRSLSCKGLKPD 450
Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 85/309 (27%), Positives = 148/309 (47%), Gaps = 16/309 (5%)
Query: 183 FPMETIFYNVTMK-SLRFGRQFQLIEQLANEMVSNEIELDNITYSTIIT---CAKRCNLF 238
F + + YN + S + G +E L + M + + D +TY++++ C+ R +
Sbjct: 170 FRPDVVIYNTIIDGSCKIGLVNDAVE-LFDRMERDGVRADAVTYNSLVAGLCCSGR---W 225
Query: 239 DEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
+A M ++P+ +T++A++DV+ K GK E + LYE PD ++ L
Sbjct: 226 SDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSL 285
Query: 299 GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
G D + +L M + G P++V YNTL+ K+ + LF EM + GL
Sbjct: 286 INGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGL 345
Query: 359 TPDEKTLTALIKIYGKARWAKDALELWERM--RENKWPMDFILYNTLLNMCADIGLVEEA 416
D T +I+ Y +A A E++ RM R N +LY +N VE+A
Sbjct: 346 VGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSRPNIRTYSILLYGLCMNW-----RVEKA 400
Query: 417 ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
LFE+M+ S+ + D +Y +++ GNV++A +LF +S G+ +V+ T +I
Sbjct: 401 LVLFENMQKSEI-ELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMIS 459
Query: 477 CLGKARRID 485
+ R+ D
Sbjct: 460 GFCRKRQWD 468
Score = 105 bits (261), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/281 (26%), Positives = 141/281 (50%), Gaps = 8/281 (2%)
Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
+ + YN + L ++ +L +MV +I + IT++ +I + F EA++ +
Sbjct: 208 DAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLY 267
Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
E M + + PD TY+++++ G+V+E + + V G PD + ++ L F +S
Sbjct: 268 EEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKS 327
Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
D + +EM G+ + + YNT+++ +AG+P A+ +F M P+ +T
Sbjct: 328 KRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSR---PNIRTY 384
Query: 366 TALIKIYGKA-RW-AKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
+ L +YG W + AL L+E M++++ +D YN +++ IG VE+A LF +
Sbjct: 385 SIL--LYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSL 442
Query: 424 KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
KPD SYT M++ + D + L+ +M E G+
Sbjct: 443 SCKGL-KPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDGL 482
Score = 89.0 bits (219), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 115/233 (49%), Gaps = 1/233 (0%)
Query: 270 SGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVV 329
S +EE + L+ + + S P + FS + +S +YD + + M+ G+ +L
Sbjct: 47 SMNLEEEIDLFCKMIQSRPLPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYS 106
Query: 330 YNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMR 389
YN ++ + + + +A S+ +M++ G PD T+++LI + + DA++L +M
Sbjct: 107 YNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKME 166
Query: 390 ENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNV 449
E + D ++YNT+++ IGLV +A LF+ M+ D + D +Y +++ G
Sbjct: 167 EMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRME-RDGVRADAVTYNSLVAGLCCSGRW 225
Query: 450 DNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
+A L +M + NV+ T +I K + + ++++ R V PD
Sbjct: 226 SDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPD 278
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/203 (20%), Positives = 85/203 (41%), Gaps = 32/203 (15%)
Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
YN + L + +Q+ + MV+ D +TY+T+I + DE + F M
Sbjct: 282 YNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMA 341
Query: 250 KTGLMPDEVTYSAILDVYAKSGK--------------------------------VEEVL 277
+ GL+ D +TY+ I+ Y ++G+ VE+ L
Sbjct: 342 QRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSRPNIRTYSILLYGLCMNWRVEKAL 401
Query: 278 SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
L+E S + D ++++ + G+ + + + + G++P++V Y T++
Sbjct: 402 VLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGF 461
Query: 338 GKAGKPGLARSLFDEMVESGLTP 360
+ + + L+ +M E GL P
Sbjct: 462 CRKRQWDKSDLLYRKMQEDGLLP 484
>sp|Q9FMD3|PP389_ARATH Pentatricopeptide repeat-containing protein At5g16640,
mitochondrial OS=Arabidopsis thaliana GN=At5g16640 PE=2
SV=1
Length = 504
Score = 119 bits (298), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 82/332 (24%), Positives = 165/332 (49%), Gaps = 5/332 (1%)
Query: 172 FFFNWIKSQNLFPMETIF-YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIIT 230
FF+ ++ + P+ +I ++ + ++ +++ ++ L +M I + T + ++
Sbjct: 68 LFFHMVQCR---PLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLN 124
Query: 231 CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
C RC+ A+ + +M K G P VT+ ++L+ + + +V + L ++++ V G+KP
Sbjct: 125 CFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKP 184
Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
+ + ++ + +S D +L M+ G+ P++V YN+L+ + +G+ A +
Sbjct: 185 NVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMV 244
Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
M + + PD T ALI K +A E +E M D + Y+ L+
Sbjct: 245 SCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMY 304
Query: 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG 470
++EAE +F M +S C PD +Y+ ++N Y V++ ++LF EMS+ GV N +
Sbjct: 305 SRLDEAEEMFGFM-VSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVT 363
Query: 471 CTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
T LIQ +A +++ +F + GV P+
Sbjct: 364 YTILIQGYCRAGKLNVAEEIFRRMVFCGVHPN 395
Score = 97.4 bits (241), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 118/258 (45%), Gaps = 1/258 (0%)
Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
W + + + + ++P F + ++ GR + E+ EM+ ++ D +TYS
Sbjct: 237 WSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSE-AEEFYEEMIRRSLDPDIVTYS 295
Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
+I + DEA E F M G PD VTYS +++ Y KS KVE + L+
Sbjct: 296 LLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQR 355
Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
G + + +++L + + +G + + + M GV PN++ YN LL + GK A
Sbjct: 356 GVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKA 415
Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
+ +M ++G+ D T +I+ KA DA +++ + D Y T++
Sbjct: 416 LVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMMLG 475
Query: 407 CADIGLVEEAERLFEDMK 424
GL EA+ LF MK
Sbjct: 476 LYKKGLRREADALFRKMK 493
Score = 97.4 bits (241), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 81/328 (24%), Positives = 143/328 (43%), Gaps = 5/328 (1%)
Query: 140 AFLRAITEIPHQPTRENALLILNSLKFWQKSY---FFFNWIKSQNLFPMETIFYNVTMKS 196
+FL + ++ H+P+ +LN + Y + F+ + P + YN +
Sbjct: 137 SFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKP-NVVIYNTIIDG 195
Query: 197 LRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPD 256
L +Q L N M + I D +TY+++I+ + +A M K + PD
Sbjct: 196 LCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPD 255
Query: 257 EVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQ 316
T++A++D K G+V E YE + PD + +S+L D +
Sbjct: 256 VFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFG 315
Query: 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
M S G P++V Y+ L+ K+ K LF EM + G+ + T T LI+ Y +A
Sbjct: 316 FMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAG 375
Query: 377 WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY 436
A E++ RM + I YN LL+ D G +E+A + DM+ + D +Y
Sbjct: 376 KLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGM-DADIVTY 434
Query: 437 TAMLNIYGSGGNVDNAIELFEEMSELGV 464
++ G V +A +++ ++ G+
Sbjct: 435 NIIIRGMCKAGEVADAWDIYCSLNCQGL 462
Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 87/394 (22%), Positives = 163/394 (41%), Gaps = 6/394 (1%)
Query: 112 RSTYSYNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTRENALLILNSLKFWQKSY 171
R YS R++ + D++ + F + P + + L+ K +
Sbjct: 40 RRAYSNGSDYREMLRNGIRFMKLDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDV 99
Query: 172 FFFNWIKSQNL-FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIIT 230
+ W + Q L P N+ + Q L +M+ E +T+ +++
Sbjct: 100 VIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLN 159
Query: 231 CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
R + +A+ F++M G P+ V Y+ I+D KS +V+ L L R G P
Sbjct: 160 GFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGP 219
Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
D + ++ L SG + ++ M + P++ +N L++A K G+ A +
Sbjct: 220 DVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFY 279
Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAK--DALELWERMRENKWPMDFILYNTLLNMCA 408
+EM+ L PD T + LI YG +++ +A E++ M D + Y+ L+N
Sbjct: 280 EEMIRRSLDPDIVTYSLLI--YGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYC 337
Query: 409 DIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINV 468
VE +LF +M + + +YT ++ Y G ++ A E+F M GV N+
Sbjct: 338 KSKKVEHGMKLFCEMSQRGVVR-NTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNI 396
Query: 469 MGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
+ L+ L +I+ + + G+ D
Sbjct: 397 ITYNVLLHGLCDNGKIEKALVILADMQKNGMDAD 430
Score = 91.3 bits (225), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/283 (25%), Positives = 128/283 (45%), Gaps = 3/283 (1%)
Query: 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
+ + YN + L ++ ++ + M EI D T++ +I + EA E++
Sbjct: 220 DVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFY 279
Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
E M + L PD VTYS ++ +++E ++ V+ G PD + +S+L + +S
Sbjct: 280 EEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKS 339
Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
+ + EM GV N V Y L++ +AGK +A +F MV G+ P+ T
Sbjct: 340 KKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITY 399
Query: 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425
L+ + AL + M++N D + YN ++ G V +A ++ +
Sbjct: 400 NVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNC 459
Query: 426 SDYCKPDNYSYTA-MLNIYGSGGNVDNAIELFEEMSELGVAIN 467
PD ++YT ML +Y G + A LF +M E G+ N
Sbjct: 460 QGL-MPDIWTYTTMMLGLYKKGLRRE-ADALFRKMKEDGILPN 500
Score = 81.3 bits (199), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 109/219 (49%), Gaps = 1/219 (0%)
Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
F+ + ++L P + + Y++ + L + E++ MVS D +TYS +I
Sbjct: 278 FYEEMIRRSLDP-DIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGY 336
Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
+ + ++ F M + G++ + VTY+ ++ Y ++GK+ ++ R V G P+
Sbjct: 337 CKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNI 396
Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
I ++VL ++G + +L +M+ G+ ++V YN ++ M KAG+ A ++
Sbjct: 397 ITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCS 456
Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN 391
+ GL PD T T ++ K ++A L+ +M+E+
Sbjct: 457 LNCQGLMPDIWTYTTMMLGLYKKGLRREADALFRKMKED 495
Score = 70.1 bits (170), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 92/189 (48%), Gaps = 1/189 (0%)
Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
F ++ S+ FP + + Y++ + ++ + +L EM + + +TY+ +I
Sbjct: 314 FGFMVSKGCFP-DVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYC 372
Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
R + A E F RM G+ P+ +TY+ +L +GK+E+ L + +G D +
Sbjct: 373 RAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIV 432
Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
++++ + ++G+ + + G+ P++ Y T++ + K G A +LF +M
Sbjct: 433 TYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLYKKGLRREADALFRKM 492
Query: 354 VESGLTPDE 362
E G+ P+E
Sbjct: 493 KEDGILPNE 501
Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 92/201 (45%), Gaps = 9/201 (4%)
Query: 349 LFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN-MC 407
LF MV+ P + L+ K + + LWE+M+ P + N LLN C
Sbjct: 68 LFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFC 127
Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
L L + +KL +P ++ ++LN + G V +A+ +F++M +G N
Sbjct: 128 RCSQLSLALSFLGKMIKLGH--EPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPN 185
Query: 468 VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSE--DVGKV 525
V+ +I L K++++D+ + + G+ PD L+S LC + D ++
Sbjct: 186 VVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLIS--GLCSSGRWSDATRM 243
Query: 526 ITCL--QQANPKLVAFLNLIE 544
++C+ ++ P + F LI+
Sbjct: 244 VSCMTKREIYPDVFTFNALID 264
>sp|P0C043|PP318_ARATH Putative pentatricopeptide repeat-containing protein At4g17915
OS=Arabidopsis thaliana GN=At4g17915 PE=3 SV=1
Length = 463
Score = 119 bits (297), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/329 (27%), Positives = 151/329 (45%), Gaps = 41/329 (12%)
Query: 202 QFQLIEQ---LANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEV 258
+F IE+ + M I D TY+++I A R + D + F+ M + G+ PD
Sbjct: 60 RFVGIEEAYAVTRRMRDAGIRPDVATYNSLIAGAARRLMLDHVLYLFDEMLEWGIYPDLW 119
Query: 259 TYSAILDVYAKSGKVEEVLS-LYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQE 317
+Y+ ++ Y K GK EE LY+ +G P P ++VL + G D + +E
Sbjct: 120 SYNTLMCCYFKLGKHEEAFRVLYKDLQLAGLNPGPDTYNVLLDALCKCGYIDNALELFKE 179
Query: 318 MKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARW 377
M+S +P L+ YN L+ + K+ + G A+ + E+ +SG TP+ T T ++K+Y K R
Sbjct: 180 MQSR-FKPELMTYNILINGLCKSRRVGTAKWMLTELKKSGYTPNAVTYTTILKLYFKTRR 238
Query: 378 AKDALELWERMRENKWPMD-----------------------------------FILYNT 402
+ L+L+ M+ + D + YNT
Sbjct: 239 IRRGLQLFLEMKREGYTYDGYAYFAVVSALIKTGRTKEAYEYMQELVRKGRRHDIVSYNT 298
Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
LLN+ G ++ + L +++ K D Y++T ++N G A E F M E+
Sbjct: 299 LLNLYFKDGNLDAVDDLLGEIERRGM-KADEYTHTIIVNGLLRTGQTRRAEEHFVSMGEM 357
Query: 463 GVAINVMGCTCLIQCLGKARRIDDLVRVF 491
G+ +N++ C CL+ L KA +D +R F
Sbjct: 358 GIGLNLVTCNCLVDGLCKAGHVDRAMRYF 386
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 98/219 (44%), Gaps = 5/219 (2%)
Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
+TY+ +I + A + K+G P+ VTY+ IL +Y K+ ++ L L+
Sbjct: 189 MTYNILINGLCKSRRVGTAKWMLTELKKSGYTPNAVTYTTILKLYFKTRRIRRGLQLFLE 248
Query: 283 GVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342
G+ D A+ + ++G +QE+ G + ++V YNTLL K G
Sbjct: 249 MKREGYTYDGYAYFAVVSALIKTGRTKEAYEYMQELVRKGRRHDIVSYNTLLNLYFKDGN 308
Query: 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402
L E+ G+ DE T T ++ + + A E + M E ++ + N
Sbjct: 309 LDAVDDLLGEIERRGMKADEYTHTIIVNGLLRTGQTRRAEEHFVSMGEMGIGLNLVTCNC 368
Query: 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
L++ G V+ A R FE M++ D Y+YT++++
Sbjct: 369 LVDGLCKAGHVDRAMRYFESMEV-----KDEYTYTSVVH 402
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/234 (20%), Positives = 103/234 (44%), Gaps = 3/234 (1%)
Query: 180 QNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFD 239
Q+ F E + YN+ + L R+ + + E+ + + +TY+TI+ +
Sbjct: 181 QSRFKPELMTYNILINGLCKSRRVGTAKWMLTELKKSGYTPNAVTYTTILKLYFKTRRIR 240
Query: 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299
++ F M + G D Y A++ K+G+ +E + V G + D ++++ L
Sbjct: 241 RGLQLFLEMKREGYTYDGYAYFAVVSALIKTGRTKEAYEYMQELVRKGRRHDIVSYNTLL 300
Query: 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
++ + G+ D + +L E++ G++ + + ++ + + G+ A F M E G+
Sbjct: 301 NLYFKDGNLDAVDDLLGEIERRGMKADEYTHTIIVNGLLRTGQTRRAEEHFVSMGEMGIG 360
Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
+ T L+ KA A+ +E M ++ + + N+C D+ V
Sbjct: 361 LNLVTCNCLVDGLCKAGHVDRAMRYFESMEVKD---EYTYTSVVHNLCKDMRFV 411
>sp|Q56XR6|PP421_ARATH Pentatricopeptide repeat-containing protein At5g46680
OS=Arabidopsis thaliana GN=At5g46680 PE=2 SV=2
Length = 468
Score = 119 bits (297), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/288 (28%), Positives = 151/288 (52%), Gaps = 4/288 (1%)
Query: 206 IEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF-ERMYKTGLMPDEVTYSAIL 264
+ QL +EM+ + + D +Y+T+++C + EA + E ++ GL+P TY+ +L
Sbjct: 102 VLQLFDEMLHSGLSPDMWSYNTLMSCYFKLGRHGEAFKILHEDIHLAGLVPGIDTYNILL 161
Query: 265 DVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQ 324
D KSG + + L++ + S KP+ + +++L +S + ++++E+K G
Sbjct: 162 DALCKSGHTDNAIELFKH-LKSRVKPELMTYNILINGLCKSRRVGSVDWMMRELKKSGYT 220
Query: 325 PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALE- 383
PN V Y T+L+ K + LF +M + G T D A++ K A++A E
Sbjct: 221 PNAVTYTTMLKMYFKTKRIEKGLQLFLKMKKEGYTFDGFANCAVVSALIKTGRAEEAYEC 280
Query: 384 LWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIY 443
+ E +R D + YNTLLN+ G ++ + L E++++ KPD+Y++T ++N
Sbjct: 281 MHELVRSGTRSQDIVSYNTLLNLYFKDGNLDAVDDLLEEIEMKGL-KPDDYTHTIIVNGL 339
Query: 444 GSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
+ GN A + + E+G+ +V+ C CLI L KA +D +R+F
Sbjct: 340 LNIGNTGGAEKHLACIGEMGMQPSVVTCNCLIDGLCKAGHVDRAMRLF 387
Score = 57.4 bits (137), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 81/184 (44%), Gaps = 9/184 (4%)
Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
T + K+ R + QL ++ E + D +++ + +EA E
Sbjct: 227 TTMLKMYFKTKRIEKGLQLFLKMKKEGYT----FDGFANCAVVSALIKTGRAEEAYECMH 282
Query: 247 RMYKTGLMP-DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
+ ++G D V+Y+ +L++Y K G ++ V L E G KPD +++
Sbjct: 283 ELVRSGTRSQDIVSYNTLLNLYFKDGNLDAVDDLLEEIEMKGLKPDDYTHTIIVNGLLNI 342
Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
G+ G L + +G+QP++V N L++ + KAG A LF M DE T
Sbjct: 343 GNTGGAEKHLACIGEMGMQPSVVTCNCLIDGLCKAGHVDRAMRLFASME----VRDEFTY 398
Query: 366 TALI 369
T+++
Sbjct: 399 TSVV 402
>sp|Q9M9X9|PPR18_ARATH Pentatricopeptide repeat-containing protein At1g06710,
mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=2
SV=1
Length = 987
Score = 119 bits (297), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 96/371 (25%), Positives = 159/371 (42%), Gaps = 46/371 (12%)
Query: 205 LIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAIL 264
L E+ +EM++ + L+ I S+ C +++A M G +PD TYS +L
Sbjct: 431 LAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVL 490
Query: 265 DVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQ 324
+ + K+E L+E G D ++++ F ++G + R EM+ +G
Sbjct: 491 NYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCT 550
Query: 325 PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384
PN+V Y L+ A KA K A LF+ M+ G P+ T +ALI + KA + A ++
Sbjct: 551 PNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQI 610
Query: 385 WERM----------------RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428
+ERM +N + + Y LL+ VEEA +L + M +
Sbjct: 611 FERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEG- 669
Query: 429 CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLV 488
C+P+ Y A+++ G +D A E+ EMSE G + + LI K +R D
Sbjct: 670 CEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLAS 729
Query: 489 RVFGVSIDRGVKPD--------DRLC------------------GCLLSVVSLCETSED- 521
+V ++ P+ D LC GC +VV+ +
Sbjct: 730 KVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGF 789
Query: 522 --VGKVITCLQ 530
+GK+ TCL+
Sbjct: 790 GMIGKIETCLE 800
Score = 115 bits (288), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 89/370 (24%), Positives = 160/370 (43%), Gaps = 53/370 (14%)
Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS 226
++K++ + Q P +T Y+ + L + +L L EM + D TY+
Sbjct: 464 YEKAFSVIREMIGQGFIP-DTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYT 522
Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDE----------------------------- 257
++ + L ++A +WF M + G P+
Sbjct: 523 IMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSE 582
Query: 258 ------VTYSAILDVYAKSGKVEEVLSLYERGVAS----------------GWKPDPIAF 295
VTYSA++D + K+G+VE+ ++ER S +P+ + +
Sbjct: 583 GCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTY 642
Query: 296 SVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVE 355
L F +S + R +L M G +PN +VY+ L++ + K GK A+ + EM E
Sbjct: 643 GALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSE 702
Query: 356 SGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEE 415
G T ++LI Y K + A ++ +M EN + ++Y +++ +G +E
Sbjct: 703 HGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDE 762
Query: 416 AERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLI 475
A +L + M+ C+P+ +YTAM++ +G G ++ +EL E M GVA N + LI
Sbjct: 763 AYKLMQMME-EKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLI 821
Query: 476 QCLGKARRID 485
K +D
Sbjct: 822 DHCCKNGALD 831
Score = 103 bits (256), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 83/331 (25%), Positives = 140/331 (42%), Gaps = 59/331 (17%)
Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV---YAKSGKVEEVL 277
D + Y+ +I+ +LF+EA+++ RM T +P+ VTYS +L + G+ + VL
Sbjct: 301 DTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVL 360
Query: 278 SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLL--- 334
++ + G P P F+ L + SGD+ +L++M G P VVYN L+
Sbjct: 361 NMM---MMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSI 417
Query: 335 --------------------------------------EAMGKAGKPGLARSLFDEMVES 356
+ AGK A S+ EM+
Sbjct: 418 CGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQ 477
Query: 357 GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEA 416
G PD T + ++ A + A L+E M+ D Y +++ GL+E+A
Sbjct: 478 GFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQA 537
Query: 417 ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
+ F +M+ C P+ +YTA+++ Y V A ELFE M G N++ + LI
Sbjct: 538 RKWFNEMREVG-CTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALID 596
Query: 477 CLGKARRIDDLVRVFGVSIDRGVKPDDRLCG 507
KA +++ ++F +R+CG
Sbjct: 597 GHCKAGQVEKACQIF-----------ERMCG 616
Score = 87.8 bits (216), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/304 (24%), Positives = 127/304 (41%), Gaps = 18/304 (5%)
Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
FN ++ P + Y + + ++ +L M+S + +TYS +I
Sbjct: 541 FNEMREVGCTP-NVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHC 599
Query: 234 RCNLFDEAIEWFERMYKTGLMPDE----------------VTYSAILDVYAKSGKVEEVL 277
+ ++A + FERM + +PD VTY A+LD + KS +VEE
Sbjct: 600 KAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEAR 659
Query: 278 SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
L + G +P+ I + L + G D + V EM G L Y++L++
Sbjct: 660 KLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRY 719
Query: 338 GKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDF 397
K + LA + +M+E+ P+ T +I K +A +L + M E +
Sbjct: 720 FKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNV 779
Query: 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE 457
+ Y +++ IG +E L E M S P+ +Y +++ G +D A L E
Sbjct: 780 VTYTAMIDGFGMIGKIETCLELLERMG-SKGVAPNYVTYRVLIDHCCKNGALDVAHNLLE 838
Query: 458 EMSE 461
EM +
Sbjct: 839 EMKQ 842
Score = 64.7 bits (156), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 69/319 (21%), Positives = 125/319 (39%), Gaps = 43/319 (13%)
Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
TY+ +I + + D A M L D T K GK E L+L E
Sbjct: 237 TYNCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRCFAYSLCKVGKWREALTLVE-- 294
Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
+ PD + ++ L E+ ++ L M++ PN+V Y+TLL +
Sbjct: 295 -TENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQL 353
Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
G + + + M+ G P K +L+ Y + A +L ++M + +++YN L
Sbjct: 354 GRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNIL 413
Query: 404 L-NMCAD-----IGLVEEAERLFEDM----------KLSDYCK----------------- 430
+ ++C D L++ AE+ + +M +S + +
Sbjct: 414 IGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIRE 473
Query: 431 -------PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483
PD +Y+ +LN + ++ A LFEEM G+ +V T ++ KA
Sbjct: 474 MIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGL 533
Query: 484 IDDLVRVFGVSIDRGVKPD 502
I+ + F + G P+
Sbjct: 534 IEQARKWFNEMREVGCTPN 552
>sp|Q940A6|PP325_ARATH Pentatricopeptide repeat-containing protein At4g19440,
chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2
SV=2
Length = 838
Score = 118 bits (296), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/260 (30%), Positives = 128/260 (49%), Gaps = 5/260 (1%)
Query: 208 QLANEMVSNEIELDNITYSTIIT--CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265
++ E++ +D ++Y+T+I+ C K+ DEA + + M K GL PD TYS ++
Sbjct: 539 RIQKEILGRGCVMDRVSYNTLISGCCGKK--KLDEAFMFLDEMVKRGLKPDNYTYSILIC 596
Query: 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325
KVEE + ++ +G PD +SV+ ++ + + EM S VQP
Sbjct: 597 GLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQP 656
Query: 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385
N VVYN L+ A ++G+ +A L ++M G++P+ T T+LIK ++A L+
Sbjct: 657 NTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLF 716
Query: 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445
E MR + Y L++ +G + + E L +M S P+ +YT M+ Y
Sbjct: 717 EEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMH-SKNVHPNKITYTVMIGGYAR 775
Query: 446 GGNVDNAIELFEEMSELGVA 465
GNV A L EM E G+
Sbjct: 776 DGNVTEASRLLNEMREKGIV 795
Score = 105 bits (262), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/293 (27%), Positives = 138/293 (47%), Gaps = 6/293 (2%)
Query: 185 METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEW 244
M+ + YN + ++ +EMV ++ DN TYS +I N +EAI++
Sbjct: 551 MDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQF 610
Query: 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304
++ + G++PD TYS ++D K+ + EE ++ ++ +P+ + ++ L + +
Sbjct: 611 WDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCR 670
Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364
SG + ++MK G+ PN Y +L++ M + A+ LF+EM GL P+
Sbjct: 671 SGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFH 730
Query: 365 LTALIKIYGK-ARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423
TALI YGK + K L E +N P + I Y ++ A G V EA RL +M
Sbjct: 731 YTALIDGYGKLGQMVKVECLLREMHSKNVHP-NKITYTVMIGGYARDGNVTEASRLLNEM 789
Query: 424 KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
+ PD+ +Y + Y G V +E F+ E A + G LIQ
Sbjct: 790 REKGIV-PDSITYKEFIYGYLKQGGV---LEAFKGSDEENYAAIIEGWNKLIQ 838
Score = 104 bits (260), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/329 (24%), Positives = 153/329 (46%), Gaps = 3/329 (0%)
Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
F + ++ +FP +T N+ + SL +FQ + A ++V + D ++T I
Sbjct: 227 FPVLANKGMFPSKTT-CNILLTSLVRANEFQKCCE-AFDVVCKGVSPDVYLFTTAINAFC 284
Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
+ +EA++ F +M + G+ P+ VT++ ++D G+ +E E+ V G +P I
Sbjct: 285 KGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLI 344
Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
+S+L K + +VL+EM G PN++VYN L+++ +AG A + D M
Sbjct: 345 TYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLM 404
Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
V GL+ T LIK Y K A +A L + M + ++ + +++ + +
Sbjct: 405 VSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMF 464
Query: 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTC 473
+ A R +M L + P T +++ G A+EL+ + G ++
Sbjct: 465 DSALRFVGEMLLRNM-SPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNA 523
Query: 474 LIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
L+ L +A ++D+ R+ + RG D
Sbjct: 524 LLHGLCEAGKLDEAFRIQKEILGRGCVMD 552
Score = 98.2 bits (243), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/315 (24%), Positives = 141/315 (44%), Gaps = 5/315 (1%)
Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249
YN +K Q E+L EM+S ++ +++++I +FD A+ + M
Sbjct: 416 YNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEML 475
Query: 250 KTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
+ P + ++ K GK + L L+ + + G+ D + L E+G D
Sbjct: 476 LRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLD 535
Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGL--ARSLFDEMVESGLTPDEKTLTA 367
+ +E+ G + V YNTL+ G GK L A DEMV+ GL PD T +
Sbjct: 536 EAFRIQKEILGRGCVMDRVSYNTLIS--GCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSI 593
Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427
LI ++A++ W+ + N D Y+ +++ C EE + F++M +S
Sbjct: 594 LICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEM-MSK 652
Query: 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487
+P+ Y ++ Y G + A+EL E+M G++ N T LI+ + R+++
Sbjct: 653 NVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEA 712
Query: 488 VRVFGVSIDRGVKPD 502
+F G++P+
Sbjct: 713 KLLFEEMRMEGLEPN 727
Score = 98.2 bits (243), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/277 (24%), Positives = 131/277 (47%), Gaps = 4/277 (1%)
Query: 241 AIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGK 300
A++ F + G+ P + T + +L ++ + ++ ++ V G PD F+
Sbjct: 223 ALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDV-VCKGVSPDVYLFTTAIN 281
Query: 301 MFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTP 360
F + G + + +M+ GV PN+V +NT+++ +G G+ A ++MVE G+ P
Sbjct: 282 AFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEP 341
Query: 361 DEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLF 420
T + L+K +A+ DA + + M + +P + I+YN L++ + G + +A +
Sbjct: 342 TLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEI- 400
Query: 421 EDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK 480
+D+ +S + +Y ++ Y G DNA L +EM +G +N T +I L
Sbjct: 401 KDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCS 460
Query: 481 ARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCE 517
D +R G + R + P L L+S LC+
Sbjct: 461 HLMFDSALRFVGEMLLRNMSPGGGLLTTLIS--GLCK 495
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/385 (18%), Positives = 144/385 (37%), Gaps = 69/385 (17%)
Query: 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
+ +N + L ++ +MV +E ITYS ++ R +A +
Sbjct: 308 VVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLK 367
Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
M K G P+ + Y+ ++D + ++G + + + + + V+ G ++ L K + ++G
Sbjct: 368 EMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNG 427
Query: 307 DYDGIRYVLQEMKSLG-----------------------------------VQPNLVVYN 331
D +L+EM S+G + P +
Sbjct: 428 QADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLT 487
Query: 332 TLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN 391
TL+ + K GK A L+ + + G D +T AL+ +A +A + + +
Sbjct: 488 TLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGR 547
Query: 392 KWPMDFILYNTLLNMCADIGLVEEAERLFEDM---------------------------- 423
MD + YNTL++ C ++EA ++M
Sbjct: 548 GCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEA 607
Query: 424 -KLSDYCK-----PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
+ D CK PD Y+Y+ M++ + E F+EM V N + LI+
Sbjct: 608 IQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRA 667
Query: 478 LGKARRIDDLVRVFGVSIDRGVKPD 502
++ R+ + + +G+ P+
Sbjct: 668 YCRSGRLSMALELREDMKHKGISPN 692
>sp|Q9C9A2|PP112_ARATH Pentatricopeptide repeat-containing protein At1g71060,
mitochondrial OS=Arabidopsis thaliana GN=At1g71060 PE=2
SV=1
Length = 510
Score = 118 bits (295), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/359 (24%), Positives = 165/359 (45%), Gaps = 32/359 (8%)
Query: 174 FNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233
F W ++Q F T YN ++SL +QF+LI L ++M + ++ L T++ I
Sbjct: 115 FKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWSLVDDMKAKKL-LSKETFALISRRYA 173
Query: 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI 293
R EAI F +M + G + ++ +LD +KS V + ++++ ++PD
Sbjct: 174 RARKVKEAIGAFHKMEEFGFKMESSDFNRMLDTLSKSRNVGDAQKVFDKMKKKRFEPDIK 233
Query: 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
++++L + +G+ + + V +EMK G +P++V Y ++ A KA K A F+EM
Sbjct: 234 SYTILLEGWGQELNLLRVDEVNREMKDEGFEPDVVAYGIIINAHCKAKKYEEAIRFFNEM 293
Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
+ P +LI G + DALE +ER + + +P++ YN L+ +
Sbjct: 294 EQRNCKPSPHIFCSLINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNALVGAYCWSQRM 353
Query: 414 EEAERLFEDMKLSDY-------------------------------CKPDNYSYTAMLNI 442
E+A + ++M+L C+P +Y M+ +
Sbjct: 354 EDAYKTVDEMRLKGVGPNARTYDIILHHLIRMQRSKEAYEVYQTMSCEPTVSTYEIMVRM 413
Query: 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501
+ + +D AI++++EM GV + + LI L ++D+ F +D G++P
Sbjct: 414 FCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACEYFNEMLDVGIRP 472
>sp|O80958|PP194_ARATH Pentatricopeptide repeat-containing protein At2g39230,
mitochondrial OS=Arabidopsis thaliana GN=LOJ PE=1 SV=1
Length = 867
Score = 118 bits (295), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/312 (24%), Positives = 151/312 (48%), Gaps = 34/312 (10%)
Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267
++ +EMV I + I ++++ + N +A++ F RM + GL PD+V +S +++ +
Sbjct: 331 RVMDEMVGFGIPMSVIAATSLVNGYCKGNELGKALDLFNRMEEEGLAPDKVMFSVMVEWF 390
Query: 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGK--------------------------- 300
K+ ++E+ + Y R + P + + +
Sbjct: 391 CKNMEMEKAIEFYMRMKSVRIAPSSVLVHTMIQGCLKAESPEAALEIFNDSFESWIAHGF 450
Query: 301 -------MFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353
+F + G D L+ M+ G++PN+V YN ++ A + LARS+F EM
Sbjct: 451 MCNKIFLLFCKQGKVDAATSFLKMMEQKGIEPNVVFYNNMMLAHCRMKNMDLARSIFSEM 510
Query: 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413
+E GL P+ T + LI + K + ++A ++ +M + + + ++YNT++N +G
Sbjct: 511 LEKGLEPNNFTYSILIDGFFKNKDEQNAWDVINQMNASNFEANEVIYNTIINGLCKVGQT 570
Query: 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTC 473
+A+ + +++ SY ++++ + G+ D+A+E + EMSE G + NV+ T
Sbjct: 571 SKAKEMLQNLIKEKRYSMSCTSYNSIIDGFVKVGDTDSAVETYREMSENGKSPNVVTFTS 630
Query: 474 LIQCLGKARRID 485
LI K+ R+D
Sbjct: 631 LINGFCKSNRMD 642
Score = 98.2 bits (243), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/299 (25%), Positives = 139/299 (46%), Gaps = 3/299 (1%)
Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYS 226
Q ++ N + + N F + YN + L + G+ + E L N + + +Y+
Sbjct: 536 QNAWDVINQMNASN-FEANEVIYNTIINGLCKVGQTSKAKEMLQNLIKEKRYSMSCTSYN 594
Query: 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286
+II + D A+E + M + G P+ VT++++++ + KS +++ L + +
Sbjct: 595 SIIDGFVKVGDTDSAVETYREMSENGKSPNVVTFTSLINGFCKSNRMDLALEMTHEMKSM 654
Query: 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346
K D A+ L F + D + E+ LG+ PN+ VYN+L+ GK A
Sbjct: 655 ELKLDLPAYGALIDGFCKKNDMKTAYTLFSELPELGLMPNVSVYNSLISGFRNLGKMDAA 714
Query: 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406
L+ +MV G++ D T T +I K A +L+ + + D IL+ L+N
Sbjct: 715 IDLYKKMVNDGISCDLFTYTTMIDGLLKDGNINLASDLYSELLDLGIVPDEILHMVLVNG 774
Query: 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
+ G +A ++ E+MK D P+ Y+ ++ + GN++ A L +EM E G+
Sbjct: 775 LSKKGQFLKASKMLEEMKKKD-VTPNVLLYSTVIAGHHREGNLNEAFRLHDEMLEKGIV 832
Score = 90.9 bits (224), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/302 (23%), Positives = 136/302 (45%), Gaps = 2/302 (0%)
Query: 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVT-YSAILDVYAK 269
N+M ++ E + + Y+TII + +A E + + K T Y++I+D + K
Sbjct: 543 NQMNASNFEANEVIYNTIINGLCKVGQTSKAKEMLQNLIKEKRYSMSCTSYNSIIDGFVK 602
Query: 270 SGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVV 329
G + + Y +G P+ + F+ L F +S D + EMKS+ ++ +L
Sbjct: 603 VGDTDSAVETYREMSENGKSPNVVTFTSLINGFCKSNRMDLALEMTHEMKSMELKLDLPA 662
Query: 330 YNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMR 389
Y L++ K A +LF E+ E GL P+ +LI + A++L+++M
Sbjct: 663 YGALIDGFCKKNDMKTAYTLFSELPELGLMPNVSVYNSLISGFRNLGKMDAAIDLYKKMV 722
Query: 390 ENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNV 449
+ D Y T+++ G + A L+ ++ L PD + ++N G
Sbjct: 723 NDGISCDLFTYTTMIDGLLKDGNINLASDLYSEL-LDLGIVPDEILHMVLVNGLSKKGQF 781
Query: 450 DNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCL 509
A ++ EEM + V NV+ + +I + +++ R+ +++G+ DD + L
Sbjct: 782 LKASKMLEEMKKKDVTPNVLLYSTVIAGHHREGNLNEAFRLHDEMLEKGIVHDDTVFNLL 841
Query: 510 LS 511
+S
Sbjct: 842 VS 843
Score = 84.3 bits (207), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/314 (21%), Positives = 134/314 (42%), Gaps = 38/314 (12%)
Query: 226 STIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVA 285
+ +++ R NL DEA E + +M G+ D VT ++ + K EE + ++ R ++
Sbjct: 208 NNVLSSLVRSNLIDEAKEIYNKMVLIGVAGDNVTTQLLMRASLRERKPEEAVKIFRRVMS 267
Query: 286 SGWKPDPIAFSVL---------------------GKM---------------FGESGDYD 309
G +PD + FS+ GK+ F + G+ +
Sbjct: 268 RGAEPDGLLFSLAVQAACKTPDLVMALDLLREMRGKLGVPASQETYTSVIVAFVKEGNME 327
Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
V+ EM G+ +++ +L+ K + G A LF+ M E GL PD+ + ++
Sbjct: 328 EAVRVMDEMVGFGIPMSVIAATSLVNGYCKGNELGKALDLFNRMEEEGLAPDKVMFSVMV 387
Query: 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429
+ + K + A+E + RM+ + +L +T++ C E A +F D S
Sbjct: 388 EWFCKNMEMEKAIEFYMRMKSVRIAPSSVLVHTMIQGCLKAESPEAALEIFNDSFESWIA 447
Query: 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
+ + ++ G VD A + M + G+ NV+ ++ + + +D
Sbjct: 448 H--GFMCNKIFLLFCKQGKVDAATSFLKMMEQKGIEPNVVFYNNMMLAHCRMKNMDLARS 505
Query: 490 VFGVSIDRGVKPDD 503
+F +++G++P++
Sbjct: 506 IFSEMLEKGLEPNN 519
Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 102/218 (46%), Gaps = 4/218 (1%)
Query: 192 VTMKSLRFG----RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFER 247
VT SL G + L ++ +EM S E++LD Y +I + N A F
Sbjct: 626 VTFTSLINGFCKSNRMDLALEMTHEMKSMELKLDLPAYGALIDGFCKKNDMKTAYTLFSE 685
Query: 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307
+ + GLMP+ Y++++ + GK++ + LY++ V G D ++ + + G+
Sbjct: 686 LPELGLMPNVSVYNSLISGFRNLGKMDAAIDLYKKMVNDGISCDLFTYTTMIDGLLKDGN 745
Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA 367
+ + E+ LG+ P+ +++ L+ + K G+ A + +EM + +TP+ +
Sbjct: 746 INLASDLYSELLDLGIVPDEILHMVLVNGLSKKGQFLKASKMLEEMKKKDVTPNVLLYST 805
Query: 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405
+I + + +A L + M E D ++N L++
Sbjct: 806 VIAGHHREGNLNEAFRLHDEMLEKGIVHDDTVFNLLVS 843
Score = 67.8 bits (164), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/258 (19%), Positives = 118/258 (45%), Gaps = 2/258 (0%)
Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
TY+++I + +EA+ + M G+ + +++++ Y K ++ + L L+ R
Sbjct: 312 TYTSVIVAFVKEGNMEEAVRVMDEMVGFGIPMSVIAATSLVNGYCKGNELGKALDLFNRM 371
Query: 284 VASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343
G PD + FSV+ + F ++ + + MKS+ + P+ V+ +T+++ KA P
Sbjct: 372 EEEGLAPDKVMFSVMVEWFCKNMEMEKAIEFYMRMKSVRIAPSSVLVHTMIQGCLKAESP 431
Query: 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403
A +F++ ES + + ++ K A + M + + + YN +
Sbjct: 432 EAALEIFNDSFESWIA-HGFMCNKIFLLFCKQGKVDAATSFLKMMEQKGIEPNVVFYNNM 490
Query: 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463
+ + ++ A +F +M L +P+N++Y+ +++ + + NA ++ +M+
Sbjct: 491 MLAHCRMKNMDLARSIFSEM-LEKGLEPNNFTYSILIDGFFKNKDEQNAWDVINQMNASN 549
Query: 464 VAINVMGCTCLIQCLGKA 481
N + +I L K
Sbjct: 550 FEANEVIYNTIINGLCKV 567
Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 84/202 (41%), Gaps = 36/202 (17%)
Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
+ +Y F+ + L P ++ YN + R + L +MV++ I D TY+T
Sbjct: 677 KTAYTLFSELPELGLMPNVSV-YNSLISGFRNLGKMDAAIDLYKKMVNDGISCDLFTYTT 735
Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
+I + + A + + + G++PDE+ + +++ +K G+
Sbjct: 736 MIDGLLKDGNINLASDLYSELLDLGIVPDEILHMVLVNGLSKKGQ--------------- 780
Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
F KM L+EMK V PN+++Y+T++ + G A
Sbjct: 781 -------FLKASKM-------------LEEMKKKDVTPNVLLYSTVIAGHHREGNLNEAF 820
Query: 348 SLFDEMVESGLTPDEKTLTALI 369
L DEM+E G+ D+ L+
Sbjct: 821 RLHDEMLEKGIVHDDTVFNLLV 842
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 260,370,162
Number of Sequences: 539616
Number of extensions: 11018458
Number of successful extensions: 42242
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 93
Number of HSP's that attempted gapping in prelim test: 33106
Number of HSP's gapped (non-prelim): 3008
length of query: 710
length of database: 191,569,459
effective HSP length: 125
effective length of query: 585
effective length of database: 124,117,459
effective search space: 72608713515
effective search space used: 72608713515
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)