Query 005178
Match_columns 710
No_of_seqs 795 out of 4240
Neff 10.4
Searched_HMMs 46136
Date Thu Mar 28 19:20:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005178.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005178hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 1.2E-73 2.7E-78 646.3 72.4 541 160-708 446-1026(1060)
2 PLN03081 pentatricopeptide (PP 100.0 1.5E-63 3.2E-68 562.8 55.6 507 159-697 95-614 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 2.7E-61 5.8E-66 557.6 53.7 526 133-697 182-777 (857)
4 PLN03218 maturation of RBCL 1; 100.0 1.6E-59 3.5E-64 531.6 63.8 454 147-607 363-849 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 8.8E-56 1.9E-60 499.6 55.5 430 157-603 129-561 (697)
6 PLN03077 Protein ECB2; Provisi 100.0 1.7E-56 3.7E-61 517.6 50.8 453 158-636 128-616 (857)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1E-26 2.2E-31 275.0 58.0 455 161-636 441-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2.7E-25 5.9E-30 262.8 57.8 458 160-637 372-865 (899)
9 KOG4626 O-linked N-acetylgluco 99.9 1.9E-21 4.1E-26 195.3 38.7 432 164-613 95-540 (966)
10 KOG4626 O-linked N-acetylgluco 99.9 1.4E-21 3.1E-26 196.2 37.4 422 165-604 62-488 (966)
11 PRK11447 cellulose synthase su 99.9 2.1E-19 4.5E-24 213.8 60.2 458 164-636 160-738 (1157)
12 PRK11447 cellulose synthase su 99.9 9.1E-19 2E-23 208.3 56.8 372 159-540 70-532 (1157)
13 PRK11788 tetratricopeptide rep 99.9 1E-20 2.2E-25 200.6 35.3 311 194-518 42-362 (389)
14 TIGR00990 3a0801s09 mitochondr 99.9 6.2E-18 1.4E-22 188.9 52.1 253 340-599 307-571 (615)
15 PRK11788 tetratricopeptide rep 99.9 3.6E-19 7.8E-24 188.7 37.7 264 269-538 47-317 (389)
16 TIGR00990 3a0801s09 mitochondr 99.9 3.8E-17 8.3E-22 182.6 51.2 393 160-563 136-567 (615)
17 PRK15174 Vi polysaccharide exp 99.9 6.1E-18 1.3E-22 188.2 44.4 331 194-535 49-384 (656)
18 PRK15174 Vi polysaccharide exp 99.8 8.7E-17 1.9E-21 179.0 47.3 329 157-497 48-381 (656)
19 PRK10049 pgaA outer membrane p 99.8 1.9E-16 4.2E-21 180.2 49.0 418 151-580 15-470 (765)
20 PRK09782 bacteriophage N4 rece 99.8 9.9E-16 2.1E-20 174.3 54.4 467 116-600 106-707 (987)
21 PRK10049 pgaA outer membrane p 99.8 3.2E-16 6.9E-21 178.4 47.0 405 184-598 12-455 (765)
22 PRK09782 bacteriophage N4 rece 99.8 1.2E-14 2.6E-19 165.6 54.1 463 146-636 103-704 (987)
23 PRK14574 hmsH outer membrane p 99.8 7.2E-14 1.6E-18 156.0 52.4 399 156-563 73-509 (822)
24 KOG2003 TPR repeat-containing 99.8 1.1E-16 2.4E-21 155.6 25.3 440 188-640 202-691 (840)
25 PRK14574 hmsH outer membrane p 99.8 9.7E-14 2.1E-18 155.0 50.8 430 158-598 41-512 (822)
26 KOG2002 TPR-containing nuclear 99.8 2.6E-14 5.6E-19 152.4 43.4 425 167-600 252-710 (1018)
27 KOG4422 Uncharacterized conser 99.7 1.8E-13 3.8E-18 132.9 36.7 393 187-600 116-552 (625)
28 KOG0495 HAT repeat protein [RN 99.7 1E-11 2.2E-16 127.0 48.2 468 148-643 312-787 (913)
29 KOG0495 HAT repeat protein [RN 99.7 4.4E-11 9.4E-16 122.4 50.5 435 151-599 406-846 (913)
30 KOG2002 TPR-containing nuclear 99.7 1.4E-12 2.9E-17 139.4 41.1 445 144-598 259-744 (1018)
31 KOG1155 Anaphase-promoting com 99.7 6.5E-12 1.4E-16 123.7 41.8 330 183-531 160-494 (559)
32 KOG4422 Uncharacterized conser 99.7 1.1E-11 2.4E-16 120.7 40.9 240 221-465 206-465 (625)
33 KOG2003 TPR repeat-containing 99.7 3.4E-13 7.4E-18 131.6 30.1 117 167-285 217-337 (840)
34 KOG1915 Cell cycle control pro 99.6 3.7E-10 8E-15 111.6 46.1 420 164-599 86-536 (677)
35 KOG2076 RNA polymerase III tra 99.6 1.2E-10 2.7E-15 124.0 45.0 358 165-529 153-552 (895)
36 PRK10747 putative protoheme IX 99.6 9.1E-12 2E-16 131.0 35.8 281 200-494 97-387 (398)
37 TIGR00540 hemY_coli hemY prote 99.6 2.3E-11 5E-16 128.6 37.8 131 396-529 262-396 (409)
38 KOG0547 Translocase of outer m 99.6 4.7E-11 1E-15 118.4 36.4 219 372-597 336-564 (606)
39 TIGR00540 hemY_coli hemY prote 99.6 8.6E-12 1.9E-16 131.9 33.7 285 305-597 97-397 (409)
40 KOG1155 Anaphase-promoting com 99.6 4.9E-11 1.1E-15 117.6 35.8 350 160-529 173-533 (559)
41 PRK10747 putative protoheme IX 99.6 3E-11 6.6E-16 127.0 37.0 283 235-531 97-389 (398)
42 KOG1126 DNA-binding cell divis 99.6 2E-12 4.3E-17 133.4 26.4 289 237-538 334-626 (638)
43 KOG2076 RNA polymerase III tra 99.5 2E-10 4.4E-15 122.4 41.4 340 185-530 137-510 (895)
44 PF13429 TPR_15: Tetratricopep 99.5 5.6E-14 1.2E-18 141.1 13.7 258 264-529 15-274 (280)
45 PF13429 TPR_15: Tetratricopep 99.5 4.3E-14 9.3E-19 141.9 12.7 249 297-551 13-262 (280)
46 COG2956 Predicted N-acetylgluc 99.5 3.3E-11 7.2E-16 113.6 30.2 267 271-546 49-325 (389)
47 KOG1126 DNA-binding cell divis 99.5 2.3E-12 5E-17 132.8 24.2 265 272-547 334-601 (638)
48 KOG1915 Cell cycle control pro 99.5 7.2E-09 1.6E-13 102.7 44.4 433 185-636 71-534 (677)
49 COG2956 Predicted N-acetylgluc 99.5 2.9E-10 6.2E-15 107.3 32.4 269 235-514 48-326 (389)
50 COG3071 HemY Uncharacterized e 99.5 4.1E-10 8.9E-15 109.7 33.9 295 191-496 86-389 (400)
51 COG3071 HemY Uncharacterized e 99.5 3.9E-10 8.3E-15 109.9 33.0 293 305-606 97-397 (400)
52 KOG0547 Translocase of outer m 99.5 1E-09 2.2E-14 109.1 34.9 376 164-564 128-563 (606)
53 KOG1173 Anaphase-promoting com 99.4 9.3E-10 2E-14 111.5 33.2 285 253-546 240-532 (611)
54 PRK12370 invasion protein regu 99.4 7.4E-10 1.6E-14 121.8 32.5 246 342-597 276-533 (553)
55 KOG2047 mRNA splicing factor [ 99.4 2.4E-07 5.3E-12 95.5 46.0 268 155-428 106-508 (835)
56 TIGR02521 type_IV_pilW type IV 99.3 1.1E-09 2.4E-14 106.7 28.1 196 292-492 31-227 (234)
57 KOG1173 Anaphase-promoting com 99.3 9.7E-09 2.1E-13 104.3 34.3 445 166-636 31-516 (611)
58 PRK12370 invasion protein regu 99.3 9E-10 1.9E-14 121.1 29.7 214 238-460 277-500 (553)
59 KOG1129 TPR repeat-containing 99.3 1.5E-10 3.2E-15 109.1 18.6 205 334-544 230-436 (478)
60 TIGR02521 type_IV_pilW type IV 99.3 2.2E-09 4.8E-14 104.5 27.8 197 258-459 32-229 (234)
61 KOG2047 mRNA splicing factor [ 99.3 5E-07 1.1E-11 93.2 42.3 431 188-634 103-611 (835)
62 KOG4162 Predicted calmodulin-b 99.3 3.8E-07 8.3E-12 96.3 42.2 207 218-427 319-543 (799)
63 KOG4318 Bicoid mRNA stability 99.3 3.6E-10 7.9E-15 119.7 19.6 246 212-483 15-286 (1088)
64 PF12569 NARP1: NMDA receptor- 99.3 2.6E-08 5.6E-13 105.8 33.5 291 231-532 13-334 (517)
65 KOG1174 Anaphase-promoting com 99.2 6.2E-07 1.3E-11 87.8 39.6 301 290-599 192-500 (564)
66 KOG3785 Uncharacterized conser 99.2 7.7E-08 1.7E-12 92.1 31.9 406 161-597 67-488 (557)
67 KOG4162 Predicted calmodulin-b 99.2 4.5E-07 9.8E-12 95.8 40.6 410 183-599 319-783 (799)
68 KOG1174 Anaphase-promoting com 99.2 2.7E-07 5.9E-12 90.3 36.1 301 324-638 191-500 (564)
69 KOG1129 TPR repeat-containing 99.2 2.1E-09 4.6E-14 101.5 20.8 233 298-537 229-463 (478)
70 KOG1840 Kinesin light chain [C 99.2 6.7E-09 1.5E-13 108.8 26.6 240 292-531 199-478 (508)
71 KOG1156 N-terminal acetyltrans 99.2 2.1E-06 4.5E-11 89.2 41.6 437 138-594 27-506 (700)
72 KOG4318 Bicoid mRNA stability 99.2 3.2E-08 6.8E-13 105.4 28.1 252 175-448 14-286 (1088)
73 KOG1840 Kinesin light chain [C 99.2 3E-08 6.4E-13 104.1 28.0 237 259-495 201-477 (508)
74 PF13041 PPR_2: PPR repeat fam 99.1 1.3E-10 2.8E-15 81.8 6.6 47 326-372 2-48 (50)
75 PF13041 PPR_2: PPR repeat fam 99.1 1.5E-10 3.2E-15 81.5 6.6 49 431-479 1-49 (50)
76 PF12569 NARP1: NMDA receptor- 99.1 2.5E-07 5.5E-12 98.4 33.4 127 366-495 198-332 (517)
77 KOG1156 N-terminal acetyltrans 99.1 4.6E-06 1E-10 86.6 40.1 454 164-634 20-507 (700)
78 PRK11189 lipoprotein NlpI; Pro 99.1 8.4E-08 1.8E-12 96.6 26.8 195 399-600 66-266 (296)
79 COG3063 PilF Tfp pilus assembl 99.1 2E-07 4.3E-12 84.7 25.5 206 329-538 37-242 (250)
80 PRK11189 lipoprotein NlpI; Pro 99.1 1.7E-07 3.7E-12 94.4 27.6 219 236-463 40-266 (296)
81 KOG2376 Signal recognition par 99.0 1.2E-05 2.7E-10 82.7 39.0 151 412-567 356-520 (652)
82 cd05804 StaR_like StaR_like; a 99.0 5.7E-06 1.2E-10 86.5 36.7 200 187-390 6-214 (355)
83 KOG0548 Molecular co-chaperone 99.0 4.9E-06 1.1E-10 84.8 33.9 385 163-570 14-459 (539)
84 KOG4340 Uncharacterized conser 99.0 1.1E-06 2.5E-11 82.3 26.7 187 405-597 249-441 (459)
85 KOG3785 Uncharacterized conser 99.0 7.2E-06 1.6E-10 78.9 32.1 402 164-595 35-453 (557)
86 KOG0624 dsRNA-activated protei 98.9 1.2E-05 2.6E-10 77.1 33.1 319 185-540 36-378 (504)
87 COG3063 PilF Tfp pilus assembl 98.9 1.4E-06 3E-11 79.3 25.2 196 227-426 40-236 (250)
88 KOG0548 Molecular co-chaperone 98.9 6.5E-06 1.4E-10 84.0 32.8 363 160-548 45-471 (539)
89 PF04733 Coatomer_E: Coatomer 98.9 3.3E-08 7.1E-13 98.0 16.4 256 269-541 13-274 (290)
90 cd05804 StaR_like StaR_like; a 98.9 7.9E-06 1.7E-10 85.4 35.5 304 223-531 7-335 (355)
91 KOG1125 TPR repeat-containing 98.9 1.8E-07 3.8E-12 95.8 19.8 250 337-592 295-564 (579)
92 KOG3617 WD40 and TPR repeat-co 98.9 3.2E-06 6.9E-11 89.6 28.8 240 186-460 725-994 (1416)
93 KOG2376 Signal recognition par 98.9 5.1E-05 1.1E-09 78.3 36.5 213 166-397 27-258 (652)
94 PRK04841 transcriptional regul 98.9 3.2E-05 6.9E-10 91.7 41.2 29 572-600 733-761 (903)
95 KOG3616 Selective LIM binding 98.8 2.1E-06 4.6E-11 89.6 25.9 343 150-539 660-1031(1636)
96 PLN02789 farnesyltranstransfer 98.8 3.2E-06 6.9E-11 85.0 26.3 204 374-582 49-267 (320)
97 KOG3617 WD40 and TPR repeat-co 98.8 2.4E-05 5.1E-10 83.2 32.7 381 164-596 741-1171(1416)
98 PRK04841 transcriptional regul 98.8 4.2E-05 9E-10 90.7 40.0 337 197-533 384-761 (903)
99 KOG3616 Selective LIM binding 98.8 1.1E-05 2.4E-10 84.4 29.1 46 156-211 535-581 (1636)
100 KOG1127 TPR repeat-containing 98.8 1.9E-05 4.1E-10 86.0 31.6 177 139-320 476-658 (1238)
101 KOG1070 rRNA processing protei 98.8 4.6E-06 1E-10 93.5 27.8 225 289-518 1455-1686(1710)
102 PF04733 Coatomer_E: Coatomer 98.8 6.4E-07 1.4E-11 88.9 18.8 248 197-461 11-264 (290)
103 KOG1127 TPR repeat-containing 98.8 7.7E-06 1.7E-10 88.9 27.8 384 237-634 473-909 (1238)
104 KOG0985 Vesicle coat protein c 98.7 9.5E-05 2.1E-09 80.5 34.5 358 185-589 982-1373(1666)
105 KOG0624 dsRNA-activated protei 98.7 7.9E-05 1.7E-09 71.7 30.4 302 255-569 36-373 (504)
106 KOG4340 Uncharacterized conser 98.7 5.7E-05 1.2E-09 71.2 28.8 323 157-494 16-372 (459)
107 KOG1125 TPR repeat-containing 98.7 8.3E-07 1.8E-11 91.0 18.0 218 372-597 295-525 (579)
108 KOG1070 rRNA processing protei 98.7 1.5E-05 3.3E-10 89.5 28.2 240 245-492 1447-1695(1710)
109 PLN02789 farnesyltranstransfer 98.7 1.6E-05 3.6E-10 79.9 26.5 204 339-548 49-266 (320)
110 KOG1128 Uncharacterized conser 98.6 2.4E-06 5.1E-11 90.0 18.9 221 290-532 396-616 (777)
111 KOG1914 mRNA cleavage and poly 98.6 0.0012 2.6E-08 67.8 37.0 115 167-285 35-165 (656)
112 KOG0985 Vesicle coat protein c 98.5 0.0016 3.6E-08 71.4 36.7 141 256-420 1103-1243(1666)
113 PRK14720 transcript cleavage f 98.5 5.6E-05 1.2E-09 84.6 26.8 238 221-514 30-268 (906)
114 KOG1914 mRNA cleavage and poly 98.5 0.0022 4.9E-08 65.9 39.0 402 184-596 17-498 (656)
115 KOG2053 Mitochondrial inherita 98.5 0.0037 7.9E-08 68.3 41.6 229 158-394 14-258 (932)
116 PRK10370 formate-dependent nit 98.5 4.9E-05 1.1E-09 71.2 22.0 124 410-537 52-178 (198)
117 PRK15359 type III secretion sy 98.5 8.8E-06 1.9E-10 72.0 16.0 121 418-545 14-134 (144)
118 PF12854 PPR_1: PPR repeat 98.5 2.3E-07 4.9E-12 58.5 4.1 32 322-353 2-33 (34)
119 TIGR03302 OM_YfiO outer membra 98.5 4.9E-05 1.1E-09 74.1 22.6 64 291-356 32-99 (235)
120 PF12854 PPR_1: PPR repeat 98.5 2.5E-07 5.5E-12 58.3 4.1 32 463-494 2-33 (34)
121 KOG1128 Uncharacterized conser 98.4 3.5E-05 7.6E-10 81.5 21.4 212 228-461 404-615 (777)
122 PRK14720 transcript cleavage f 98.4 0.0002 4.3E-09 80.3 27.5 240 184-479 28-268 (906)
123 COG5010 TadD Flp pilus assembl 98.4 9.7E-05 2.1E-09 69.0 20.7 158 296-458 70-227 (257)
124 COG5010 TadD Flp pilus assembl 98.4 0.00012 2.6E-09 68.5 21.1 157 366-527 70-226 (257)
125 PRK15179 Vi polysaccharide bio 98.4 0.00026 5.7E-09 78.7 27.8 200 292-509 28-228 (694)
126 KOG3081 Vesicle coat complex C 98.4 0.00046 1E-08 64.5 24.7 159 367-537 113-276 (299)
127 PRK10370 formate-dependent nit 98.4 9.7E-05 2.1E-09 69.2 20.8 119 375-497 52-173 (198)
128 PRK15359 type III secretion sy 98.4 4.1E-05 8.9E-10 67.8 17.3 96 399-497 26-121 (144)
129 TIGR03302 OM_YfiO outer membra 98.4 6.3E-05 1.4E-09 73.4 20.4 186 184-391 30-232 (235)
130 KOG3081 Vesicle coat complex C 98.3 0.00037 8E-09 65.2 23.6 138 298-447 114-255 (299)
131 PRK15179 Vi polysaccharide bio 98.3 0.00029 6.4E-09 78.3 26.8 235 256-515 27-267 (694)
132 TIGR02552 LcrH_SycD type III s 98.3 3.9E-05 8.5E-10 67.4 15.1 118 419-540 5-122 (135)
133 COG4783 Putative Zn-dependent 98.2 0.0023 5E-08 65.3 28.6 139 336-496 315-453 (484)
134 KOG3060 Uncharacterized conser 98.2 0.0019 4.1E-08 60.1 23.8 191 341-537 26-225 (289)
135 COG4783 Putative Zn-dependent 98.1 0.00034 7.4E-09 71.1 20.4 142 439-599 312-454 (484)
136 TIGR02552 LcrH_SycD type III s 98.1 0.00014 3.1E-09 63.8 15.3 97 397-496 17-113 (135)
137 KOG3060 Uncharacterized conser 98.0 0.006 1.3E-07 56.9 24.3 186 201-391 26-220 (289)
138 KOG0553 TPR repeat-containing 98.0 0.00014 3E-09 69.4 13.7 101 442-545 90-191 (304)
139 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00041 8.8E-09 71.4 16.2 125 189-319 171-295 (395)
140 KOG2053 Mitochondrial inherita 97.9 0.064 1.4E-06 59.0 44.4 213 140-357 31-256 (932)
141 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00047 1E-08 70.9 16.3 88 403-494 206-294 (395)
142 PF09976 TPR_21: Tetratricopep 97.8 0.0014 3.1E-08 58.1 16.8 125 400-529 15-144 (145)
143 TIGR00756 PPR pentatricopeptid 97.8 3.4E-05 7.4E-10 49.2 4.5 33 470-502 2-34 (35)
144 KOG0553 TPR repeat-containing 97.8 0.0002 4.3E-09 68.3 11.0 96 407-508 91-187 (304)
145 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00078 1.7E-08 57.4 13.9 106 435-540 4-113 (119)
146 PF09976 TPR_21: Tetratricopep 97.8 0.0016 3.4E-08 57.8 16.2 115 340-458 24-143 (145)
147 PLN03088 SGT1, suppressor of 97.8 0.00063 1.4E-08 70.3 15.1 102 442-545 11-112 (356)
148 PF13812 PPR_3: Pentatricopept 97.8 4.5E-05 9.8E-10 48.3 4.2 33 469-501 2-34 (34)
149 PF13812 PPR_3: Pentatricopept 97.7 4.2E-05 9.1E-10 48.5 3.9 33 188-220 2-34 (34)
150 TIGR00756 PPR pentatricopeptid 97.7 5.7E-05 1.2E-09 48.2 4.6 33 329-361 2-34 (35)
151 cd00189 TPR Tetratricopeptide 97.7 0.00072 1.6E-08 54.4 11.5 95 438-534 5-99 (100)
152 PF05843 Suf: Suppressor of fo 97.7 0.0013 2.8E-08 65.5 15.0 142 398-543 2-147 (280)
153 KOG0550 Molecular chaperone (D 97.6 0.0054 1.2E-07 61.2 18.2 264 261-551 53-335 (486)
154 PF10037 MRP-S27: Mitochondria 97.6 0.00073 1.6E-08 69.8 13.0 122 219-340 63-186 (429)
155 PRK10153 DNA-binding transcrip 97.6 0.0034 7.4E-08 67.8 18.6 70 467-538 419-488 (517)
156 PF10037 MRP-S27: Mitochondria 97.6 0.00098 2.1E-08 68.9 13.7 124 252-375 61-186 (429)
157 PRK15363 pathogenicity island 97.6 0.0037 8.1E-08 54.6 14.9 94 400-496 38-131 (157)
158 cd00189 TPR Tetratricopeptide 97.6 0.0012 2.7E-08 52.9 11.8 94 400-496 3-96 (100)
159 PF14938 SNAP: Soluble NSF att 97.6 0.032 6.9E-07 55.8 23.6 80 435-514 157-246 (282)
160 KOG0550 Molecular chaperone (D 97.5 0.061 1.3E-06 53.9 23.6 56 193-249 55-110 (486)
161 PF08579 RPM2: Mitochondrial r 97.5 0.0017 3.7E-08 52.5 10.6 76 298-373 31-115 (120)
162 PLN03088 SGT1, suppressor of 97.5 0.0028 6.2E-08 65.5 15.4 87 407-496 12-98 (356)
163 PRK02603 photosystem I assembl 97.5 0.0033 7.1E-08 57.7 14.2 88 399-487 37-125 (172)
164 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.0051 1.1E-07 52.3 14.4 99 399-497 4-105 (119)
165 PF01535 PPR: PPR repeat; Int 97.4 0.00016 3.5E-09 44.6 3.2 29 189-217 2-30 (31)
166 CHL00033 ycf3 photosystem I as 97.4 0.0037 7.9E-08 57.2 13.6 121 450-596 16-139 (168)
167 PF01535 PPR: PPR repeat; Int 97.4 0.00016 3.5E-09 44.6 3.1 29 470-498 2-30 (31)
168 KOG1130 Predicted G-alpha GTPa 97.4 0.0027 5.8E-08 63.0 12.8 131 365-495 198-342 (639)
169 PF05843 Suf: Suppressor of fo 97.4 0.0037 8.1E-08 62.2 14.3 130 363-496 2-135 (280)
170 PRK15363 pathogenicity island 97.4 0.0028 6.1E-08 55.4 11.1 90 509-598 41-131 (157)
171 PF13432 TPR_16: Tetratricopep 97.3 0.001 2.2E-08 49.6 7.4 62 474-536 3-64 (65)
172 PF12895 Apc3: Anaphase-promot 97.3 0.00043 9.4E-09 54.8 5.5 81 411-493 3-83 (84)
173 PRK02603 photosystem I assembl 97.3 0.013 2.8E-07 53.7 16.2 93 363-457 36-130 (172)
174 PF08579 RPM2: Mitochondrial r 97.3 0.0048 1E-07 50.0 11.2 80 330-409 28-116 (120)
175 PF06239 ECSIT: Evolutionarily 97.3 0.0026 5.7E-08 58.2 10.8 103 221-342 46-153 (228)
176 PF14938 SNAP: Soluble NSF att 97.3 0.0098 2.1E-07 59.5 16.2 183 307-536 30-229 (282)
177 PRK10153 DNA-binding transcrip 97.3 0.017 3.6E-07 62.6 18.8 73 430-506 417-489 (517)
178 PF06239 ECSIT: Evolutionarily 97.3 0.0053 1.2E-07 56.3 12.5 104 255-377 45-153 (228)
179 PF13414 TPR_11: TPR repeat; P 97.3 0.0012 2.5E-08 49.9 7.3 67 467-534 2-69 (69)
180 KOG1130 Predicted G-alpha GTPa 97.3 0.0036 7.9E-08 62.1 12.2 95 434-528 196-300 (639)
181 CHL00033 ycf3 photosystem I as 97.3 0.0053 1.2E-07 56.1 12.9 82 186-268 34-117 (168)
182 PF12895 Apc3: Anaphase-promot 97.3 0.00063 1.4E-08 53.8 5.7 81 375-458 2-83 (84)
183 KOG2041 WD40 repeat protein [G 97.2 0.093 2E-06 55.9 22.4 238 219-495 689-950 (1189)
184 PF14559 TPR_19: Tetratricopep 97.2 0.0013 2.7E-08 49.6 6.6 65 479-544 2-66 (68)
185 PF04840 Vps16_C: Vps16, C-ter 97.2 0.32 7E-06 49.1 27.3 106 399-525 179-284 (319)
186 COG4700 Uncharacterized protei 97.1 0.17 3.6E-06 45.2 19.3 102 395-497 87-189 (251)
187 PRK10866 outer membrane biogen 97.1 0.25 5.4E-06 47.9 22.9 54 369-422 182-237 (243)
188 smart00463 SMR Small MutS-rela 97.0 0.0032 6.8E-08 49.1 7.6 75 613-693 2-78 (80)
189 PF12688 TPR_5: Tetratrico pep 97.0 0.042 9.2E-07 46.3 14.7 21 404-424 45-65 (120)
190 PRK10866 outer membrane biogen 97.0 0.37 8E-06 46.8 23.6 57 264-321 39-98 (243)
191 KOG2796 Uncharacterized conser 97.0 0.062 1.4E-06 50.5 16.4 133 188-321 178-315 (366)
192 PF04840 Vps16_C: Vps16, C-ter 96.9 0.47 1E-05 47.9 23.7 109 330-459 180-288 (319)
193 COG3898 Uncharacterized membra 96.9 0.56 1.2E-05 47.0 30.1 248 340-600 133-393 (531)
194 COG4700 Uncharacterized protei 96.9 0.3 6.4E-06 43.6 19.5 126 221-348 88-214 (251)
195 KOG2041 WD40 repeat protein [G 96.9 0.73 1.6E-05 49.5 24.9 318 162-529 745-1083(1189)
196 KOG2280 Vacuolar assembly/sort 96.9 0.64 1.4E-05 50.5 24.7 301 191-525 441-792 (829)
197 PF12688 TPR_5: Tetratrico pep 96.7 0.084 1.8E-06 44.5 14.0 92 333-424 7-102 (120)
198 PF13432 TPR_16: Tetratricopep 96.7 0.0072 1.6E-07 44.9 6.9 52 443-495 7-58 (65)
199 PRK10803 tol-pal system protei 96.7 0.044 9.6E-07 53.6 14.2 105 434-538 144-252 (263)
200 PF14559 TPR_19: Tetratricopep 96.7 0.0067 1.5E-07 45.5 6.6 50 410-461 4-53 (68)
201 PF13414 TPR_11: TPR repeat; P 96.7 0.0093 2E-07 44.9 7.4 61 434-495 4-65 (69)
202 KOG1538 Uncharacterized conser 96.6 0.19 4E-06 53.3 18.5 38 312-352 620-657 (1081)
203 COG4235 Cytochrome c biogenesi 96.6 0.091 2E-06 50.9 15.3 98 396-496 155-255 (287)
204 KOG2796 Uncharacterized conser 96.6 0.66 1.4E-05 43.9 25.0 140 364-507 179-323 (366)
205 KOG1538 Uncharacterized conser 96.6 0.092 2E-06 55.5 16.0 92 187-283 556-658 (1081)
206 PF13371 TPR_9: Tetratricopept 96.6 0.015 3.2E-07 44.4 8.1 64 476-540 3-66 (73)
207 COG3898 Uncharacterized membra 96.5 1 2.2E-05 45.2 33.2 120 404-532 270-392 (531)
208 COG5107 RNA14 Pre-mRNA 3'-end 96.5 1.2 2.6E-05 45.5 32.5 397 184-596 39-528 (660)
209 KOG0543 FKBP-type peptidyl-pro 96.5 0.051 1.1E-06 54.7 12.8 121 403-546 214-334 (397)
210 COG4235 Cytochrome c biogenesi 96.5 0.16 3.4E-06 49.3 15.8 118 419-540 144-264 (287)
211 PF13525 YfiO: Outer membrane 96.4 0.63 1.4E-05 43.8 19.7 55 266-320 14-70 (203)
212 PF03704 BTAD: Bacterial trans 96.3 0.15 3.3E-06 45.1 14.3 70 399-470 64-138 (146)
213 PRK15331 chaperone protein Sic 96.3 0.26 5.7E-06 43.5 15.0 89 405-496 45-133 (165)
214 PF13525 YfiO: Outer membrane 96.3 0.68 1.5E-05 43.6 19.4 45 474-520 147-195 (203)
215 PRK10803 tol-pal system protei 96.1 0.099 2.2E-06 51.2 12.5 99 223-321 144-246 (263)
216 PF13281 DUF4071: Domain of un 96.1 2.1 4.5E-05 43.8 24.4 94 192-285 146-254 (374)
217 PF13281 DUF4071: Domain of un 96.0 1.3 2.8E-05 45.3 20.1 30 467-496 304-333 (374)
218 PRK15331 chaperone protein Sic 95.9 0.12 2.5E-06 45.7 10.9 95 438-535 42-136 (165)
219 PF13424 TPR_12: Tetratricopep 95.9 0.032 7E-07 43.1 6.7 60 435-494 7-72 (78)
220 KOG1920 IkappaB kinase complex 95.8 4.1 8.8E-05 47.1 24.7 79 404-495 946-1026(1265)
221 PF13428 TPR_14: Tetratricopep 95.7 0.029 6.2E-07 37.7 5.1 41 505-545 3-43 (44)
222 PF13371 TPR_9: Tetratricopept 95.7 0.07 1.5E-06 40.5 8.1 53 443-496 5-57 (73)
223 COG0457 NrfG FOG: TPR repeat [ 95.7 2 4.3E-05 40.8 31.2 205 328-535 60-268 (291)
224 PF13424 TPR_12: Tetratricopep 95.7 0.047 1E-06 42.2 7.0 65 468-532 5-75 (78)
225 PRK11906 transcriptional regul 95.5 1.4 3E-05 46.0 18.5 86 449-537 320-406 (458)
226 KOG1941 Acetylcholine receptor 95.5 2.2 4.9E-05 42.4 18.8 128 332-460 127-273 (518)
227 PF03704 BTAD: Bacterial trans 95.5 0.08 1.7E-06 46.9 8.8 57 261-318 66-122 (146)
228 PF12921 ATP13: Mitochondrial 95.3 0.27 5.9E-06 41.9 10.7 48 430-477 49-97 (126)
229 PLN03098 LPA1 LOW PSII ACCUMUL 95.3 0.19 4E-06 52.0 11.2 65 396-462 74-141 (453)
230 KOG1941 Acetylcholine receptor 95.3 1.5 3.3E-05 43.5 16.7 132 437-596 126-272 (518)
231 COG0457 NrfG FOG: TPR repeat [ 95.2 2.9 6.2E-05 39.6 31.3 202 292-497 59-265 (291)
232 COG5107 RNA14 Pre-mRNA 3'-end 95.1 4.8 0.0001 41.4 33.3 139 396-538 396-537 (660)
233 PF07079 DUF1347: Protein of u 95.0 5.2 0.00011 41.3 38.6 141 160-304 15-179 (549)
234 KOG3941 Intermediate in Toll s 94.9 0.2 4.3E-06 47.7 9.5 30 308-337 88-117 (406)
235 PF12921 ATP13: Mitochondrial 94.9 0.45 9.8E-06 40.6 10.9 53 463-515 47-100 (126)
236 KOG2610 Uncharacterized conser 94.9 1.6 3.4E-05 43.0 15.4 154 339-495 115-274 (491)
237 PF10300 DUF3808: Protein of u 94.9 1.2 2.6E-05 48.0 16.7 96 189-286 231-334 (468)
238 smart00299 CLH Clathrin heavy 94.8 2.1 4.5E-05 37.5 15.5 40 193-233 13-52 (140)
239 PRK11906 transcriptional regul 94.8 2.5 5.5E-05 44.0 17.7 144 378-528 274-432 (458)
240 PLN03098 LPA1 LOW PSII ACCUMUL 94.8 0.37 8.1E-06 49.9 11.8 68 359-426 72-141 (453)
241 PF10300 DUF3808: Protein of u 94.8 1.7 3.8E-05 46.8 17.6 117 411-531 247-375 (468)
242 COG3118 Thioredoxin domain-con 94.7 3.5 7.7E-05 40.1 17.4 50 268-318 145-194 (304)
243 KOG3941 Intermediate in Toll s 94.6 0.29 6.4E-06 46.6 9.6 104 220-342 65-173 (406)
244 PF04053 Coatomer_WDAD: Coatom 94.5 1 2.2E-05 47.8 14.9 154 233-422 272-427 (443)
245 KOG0543 FKBP-type peptidyl-pro 94.5 1.2 2.5E-05 45.3 14.3 138 333-495 214-353 (397)
246 PF09205 DUF1955: Domain of un 94.5 2.1 4.5E-05 36.1 13.2 64 400-465 89-152 (161)
247 smart00299 CLH Clathrin heavy 94.4 3.1 6.8E-05 36.3 16.2 20 368-387 75-94 (140)
248 PF04184 ST7: ST7 protein; In 94.4 3.3 7.2E-05 43.3 17.4 57 438-494 264-321 (539)
249 PF04053 Coatomer_WDAD: Coatom 94.3 0.55 1.2E-05 49.7 12.4 57 256-321 346-402 (443)
250 PF02259 FAT: FAT domain; Int 94.3 7.4 0.00016 40.2 23.3 65 397-461 146-212 (352)
251 KOG1258 mRNA processing protei 94.2 9.7 0.00021 40.9 32.4 106 432-538 296-401 (577)
252 PF08631 SPO22: Meiosis protei 93.9 7.4 0.00016 38.7 26.5 63 293-356 85-150 (278)
253 COG1729 Uncharacterized protei 93.8 1.2 2.6E-05 42.8 12.3 95 445-539 153-251 (262)
254 PF09205 DUF1955: Domain of un 93.8 3.7 8.1E-05 34.7 14.6 59 298-357 92-150 (161)
255 PF07079 DUF1347: Protein of u 93.7 9.8 0.00021 39.4 41.1 393 167-575 61-530 (549)
256 KOG2610 Uncharacterized conser 93.5 5.7 0.00012 39.3 16.2 153 234-389 115-274 (491)
257 PF00515 TPR_1: Tetratricopept 93.5 0.23 4.9E-06 30.9 4.9 33 504-536 2-34 (34)
258 KOG4555 TPR repeat-containing 93.4 2.6 5.6E-05 35.5 11.8 55 196-251 52-106 (175)
259 KOG1550 Extracellular protein 93.2 16 0.00035 40.4 25.4 18 198-215 260-277 (552)
260 COG3118 Thioredoxin domain-con 93.1 9.2 0.0002 37.4 17.9 53 301-354 143-195 (304)
261 KOG4555 TPR repeat-containing 93.1 2 4.4E-05 36.0 10.7 89 407-498 53-145 (175)
262 PF13170 DUF4003: Protein of u 92.8 11 0.00025 37.6 21.5 129 344-474 79-223 (297)
263 KOG1550 Extracellular protein 92.7 19 0.00042 39.8 25.6 180 203-394 228-429 (552)
264 PF04184 ST7: ST7 protein; In 92.6 16 0.00034 38.6 20.9 60 331-390 263-323 (539)
265 KOG1920 IkappaB kinase complex 92.4 21 0.00046 41.6 21.0 159 236-425 894-1054(1265)
266 PF13170 DUF4003: Protein of u 92.4 7.7 0.00017 38.8 16.2 129 203-333 78-223 (297)
267 PF13512 TPR_18: Tetratricopep 92.4 4.8 0.0001 34.9 12.6 81 403-483 16-97 (142)
268 PF07719 TPR_2: Tetratricopept 92.3 0.35 7.5E-06 30.0 4.5 32 505-536 3-34 (34)
269 PF10345 Cohesin_load: Cohesin 92.2 23 0.00051 39.8 41.7 429 167-597 37-604 (608)
270 KOG1585 Protein required for f 92.2 11 0.00023 35.8 19.1 27 188-214 32-58 (308)
271 COG4105 ComL DNA uptake lipopr 92.2 11 0.00025 36.0 20.7 56 368-424 173-231 (254)
272 KOG1585 Protein required for f 92.0 11 0.00024 35.6 18.3 204 224-455 33-249 (308)
273 COG1729 Uncharacterized protei 92.0 2.3 5E-05 41.0 11.4 61 401-461 182-243 (262)
274 PF08631 SPO22: Meiosis protei 91.9 14 0.00031 36.7 27.3 162 198-362 4-192 (278)
275 COG3629 DnrI DNA-binding trans 91.9 1.9 4E-05 42.2 10.9 76 399-476 155-235 (280)
276 PF13512 TPR_18: Tetratricopep 91.9 5.5 0.00012 34.5 12.5 54 443-496 20-75 (142)
277 KOG2114 Vacuolar assembly/sort 91.6 27 0.00059 39.2 26.1 145 192-354 373-517 (933)
278 COG4105 ComL DNA uptake lipopr 91.5 14 0.00029 35.5 23.7 62 474-536 173-237 (254)
279 PF13176 TPR_7: Tetratricopept 91.5 0.43 9.3E-06 30.3 4.2 26 572-597 1-26 (36)
280 COG3629 DnrI DNA-binding trans 91.4 2.4 5.1E-05 41.5 11.0 79 433-512 153-236 (280)
281 KOG4234 TPR repeat-containing 91.2 6.7 0.00015 35.8 12.5 101 442-544 104-209 (271)
282 PF13428 TPR_14: Tetratricopep 91.1 0.88 1.9E-05 30.4 5.7 23 403-425 7-29 (44)
283 PF09613 HrpB1_HrpK: Bacterial 91.1 11 0.00023 33.5 14.3 69 198-270 21-90 (160)
284 COG1747 Uncharacterized N-term 90.9 24 0.00052 37.2 25.1 166 364-537 68-239 (711)
285 PF01713 Smr: Smr domain; Int 90.7 1.1 2.3E-05 35.1 6.6 70 616-692 2-80 (83)
286 KOG2114 Vacuolar assembly/sort 90.4 25 0.00054 39.5 18.4 176 330-529 337-516 (933)
287 COG4785 NlpI Lipoprotein NlpI, 90.2 16 0.00034 34.0 15.5 90 160-252 74-163 (297)
288 KOG2066 Vacuolar assembly/sort 89.7 38 0.00083 37.8 27.1 46 188-237 393-438 (846)
289 PRK09687 putative lyase; Provi 89.3 25 0.00054 35.0 29.2 218 185-425 35-262 (280)
290 COG4649 Uncharacterized protei 89.2 16 0.00034 32.7 14.3 123 234-356 70-196 (221)
291 KOG2066 Vacuolar assembly/sort 89.0 43 0.00093 37.4 27.2 52 197-250 366-420 (846)
292 KOG4642 Chaperone-dependent E3 88.8 7.9 0.00017 36.5 11.4 116 478-595 20-142 (284)
293 PF13181 TPR_8: Tetratricopept 88.7 0.9 1.9E-05 28.1 4.0 31 505-535 3-33 (34)
294 PF10602 RPN7: 26S proteasome 88.7 4.5 9.7E-05 37.0 10.1 61 470-530 38-100 (177)
295 PF13176 TPR_7: Tetratricopept 88.6 1 2.2E-05 28.5 4.2 23 471-493 2-24 (36)
296 PF10602 RPN7: 26S proteasome 88.6 6.1 0.00013 36.1 10.9 59 295-353 39-99 (177)
297 PRK15180 Vi polysaccharide bio 88.2 2.6 5.5E-05 43.5 8.6 119 374-497 301-420 (831)
298 PF07035 Mic1: Colon cancer-as 88.1 19 0.00042 32.3 15.3 100 314-423 16-115 (167)
299 KOG1258 mRNA processing protei 88.0 43 0.00094 36.2 34.6 115 168-285 62-179 (577)
300 PF09613 HrpB1_HrpK: Bacterial 87.9 19 0.00041 32.0 13.0 63 480-546 22-87 (160)
301 PF11207 DUF2989: Protein of u 87.6 13 0.00027 34.4 11.9 78 198-277 118-198 (203)
302 PF07035 Mic1: Colon cancer-as 87.6 21 0.00045 32.1 15.6 28 247-274 19-46 (167)
303 TIGR02561 HrpB1_HrpK type III 87.6 14 0.00031 32.2 11.5 95 481-597 23-120 (153)
304 COG4649 Uncharacterized protei 87.2 22 0.00047 31.9 15.0 139 186-325 58-200 (221)
305 PF13431 TPR_17: Tetratricopep 87.1 0.61 1.3E-05 29.1 2.4 27 564-590 6-33 (34)
306 TIGR02561 HrpB1_HrpK type III 86.9 15 0.00033 32.0 11.3 51 199-251 22-73 (153)
307 PF00515 TPR_1: Tetratricopept 86.2 1.8 3.9E-05 26.7 4.3 27 470-496 3-29 (34)
308 KOG4570 Uncharacterized conser 86.0 12 0.00026 36.8 11.3 100 217-320 59-163 (418)
309 PF13431 TPR_17: Tetratricopep 85.8 1 2.3E-05 28.1 2.9 23 430-452 10-32 (34)
310 COG1747 Uncharacterized N-term 85.5 54 0.0012 34.8 25.9 178 256-442 65-248 (711)
311 KOG0276 Vesicle coat complex C 85.5 9.1 0.0002 41.0 11.0 148 305-493 599-746 (794)
312 KOG4648 Uncharacterized conser 85.2 3.8 8.3E-05 40.4 7.7 94 443-539 107-201 (536)
313 PF06552 TOM20_plant: Plant sp 85.1 5.4 0.00012 35.9 8.0 75 520-600 52-137 (186)
314 PF04097 Nic96: Nup93/Nic96; 85.0 72 0.0016 35.9 23.9 348 227-603 116-535 (613)
315 PF13929 mRNA_stabil: mRNA sta 84.3 44 0.00096 32.8 15.4 134 202-335 143-286 (292)
316 KOG1586 Protein required for f 83.4 41 0.0009 31.8 22.0 20 517-536 209-228 (288)
317 COG3947 Response regulator con 83.2 49 0.0011 32.4 14.9 59 365-424 282-340 (361)
318 PF07719 TPR_2: Tetratricopept 83.1 2.7 5.7E-05 25.8 4.0 28 572-599 3-30 (34)
319 PF13374 TPR_10: Tetratricopep 82.1 2.9 6.3E-05 27.1 4.2 26 572-597 4-29 (42)
320 KOG0276 Vesicle coat complex C 81.3 23 0.00051 38.1 12.0 163 186-388 580-747 (794)
321 COG4785 NlpI Lipoprotein NlpI, 81.3 47 0.001 31.0 18.9 28 572-599 239-266 (297)
322 COG5159 RPN6 26S proteasome re 81.1 57 0.0012 31.8 18.4 95 367-461 130-234 (421)
323 KOG4570 Uncharacterized conser 81.0 17 0.00037 35.7 10.2 48 448-495 115-162 (418)
324 cd00923 Cyt_c_Oxidase_Va Cytoc 80.4 14 0.0003 29.4 7.7 49 342-390 22-70 (103)
325 COG2909 MalT ATP-dependent tra 79.4 1.2E+02 0.0027 34.7 28.7 227 302-528 425-684 (894)
326 KOG4648 Uncharacterized conser 79.0 10 0.00022 37.7 8.0 91 476-569 105-197 (536)
327 COG2976 Uncharacterized protei 78.9 53 0.0012 30.2 14.3 94 440-535 96-191 (207)
328 PF13374 TPR_10: Tetratricopep 78.9 5 0.00011 25.9 4.5 26 435-460 4-29 (42)
329 PF14853 Fis1_TPR_C: Fis1 C-te 78.5 9 0.0002 26.8 5.6 37 508-544 6-42 (53)
330 KOG0890 Protein kinase of the 78.3 2.1E+02 0.0046 36.8 25.8 320 192-532 1388-1731(2382)
331 PF06552 TOM20_plant: Plant sp 77.9 23 0.00051 32.0 9.4 25 520-544 97-121 (186)
332 PF13181 TPR_8: Tetratricopept 77.6 5.4 0.00012 24.4 4.1 28 572-599 3-30 (34)
333 COG3947 Response regulator con 77.4 77 0.0017 31.2 16.7 61 399-461 281-341 (361)
334 PF02284 COX5A: Cytochrome c o 77.1 12 0.00027 30.1 6.6 47 345-391 28-74 (108)
335 KOG2471 TPR repeat-containing 76.4 54 0.0012 34.6 12.6 109 405-515 248-381 (696)
336 PF02284 COX5A: Cytochrome c o 75.4 42 0.00091 27.2 9.5 45 451-495 28-72 (108)
337 PF13174 TPR_6: Tetratricopept 75.0 5.6 0.00012 24.0 3.6 27 509-535 6-32 (33)
338 PF09670 Cas_Cas02710: CRISPR- 74.9 88 0.0019 32.7 14.4 37 667-709 317-353 (379)
339 PRK09687 putative lyase; Provi 73.3 1E+02 0.0022 30.6 29.9 17 432-448 205-221 (280)
340 PF11207 DUF2989: Protein of u 73.0 80 0.0017 29.3 16.9 72 274-346 123-197 (203)
341 cd00923 Cyt_c_Oxidase_Va Cytoc 73.0 32 0.00069 27.5 7.8 62 377-440 22-83 (103)
342 PF07721 TPR_4: Tetratricopept 72.9 5.8 0.00013 22.8 3.0 23 572-594 3-25 (26)
343 COG4455 ImpE Protein of avirul 72.9 25 0.00054 32.8 8.4 76 400-477 4-81 (273)
344 smart00028 TPR Tetratricopepti 72.2 6.4 0.00014 22.9 3.5 28 507-534 5-32 (34)
345 COG2976 Uncharacterized protei 71.9 83 0.0018 29.0 13.6 86 266-356 98-188 (207)
346 KOG2280 Vacuolar assembly/sort 71.5 1.8E+02 0.0039 32.7 34.6 137 251-389 426-573 (829)
347 PF02259 FAT: FAT domain; Int 70.0 1.4E+02 0.0029 30.7 26.6 65 326-390 145-212 (352)
348 PHA02875 ankyrin repeat protei 69.8 1.1E+02 0.0023 32.5 14.2 8 495-502 222-229 (413)
349 PF04910 Tcf25: Transcriptiona 69.5 1.4E+02 0.0031 30.8 14.4 31 430-460 37-67 (360)
350 PF00637 Clathrin: Region in C 69.4 1.4 3E-05 38.7 -0.2 84 439-529 13-96 (143)
351 COG4455 ImpE Protein of avirul 69.2 34 0.00073 32.0 8.4 55 228-283 7-61 (273)
352 KOG4234 TPR repeat-containing 69.2 66 0.0014 29.7 10.1 60 436-496 137-196 (271)
353 PF04190 DUF410: Protein of un 68.3 1.3E+02 0.0027 29.6 18.4 81 396-496 89-169 (260)
354 KOG3364 Membrane protein invol 67.2 82 0.0018 27.1 10.3 75 465-540 29-108 (149)
355 KOG1586 Protein required for f 66.8 1.2E+02 0.0026 28.9 23.1 26 443-468 164-189 (288)
356 PF00637 Clathrin: Region in C 66.5 1.9 4E-05 37.9 -0.1 52 194-245 14-65 (143)
357 COG0790 FOG: TPR repeat, SEL1 66.0 1.5E+02 0.0032 29.6 23.0 146 167-322 57-221 (292)
358 TIGR03504 FimV_Cterm FimV C-te 65.9 11 0.00025 25.1 3.6 26 575-600 4-29 (44)
359 COG4259 Uncharacterized protei 65.1 34 0.00074 27.3 6.5 61 485-545 54-114 (121)
360 PF08424 NRDE-2: NRDE-2, neces 64.1 1.7E+02 0.0037 29.7 19.2 80 378-460 47-129 (321)
361 KOG2471 TPR repeat-containing 64.1 1.4E+02 0.0031 31.6 12.5 103 441-544 248-376 (696)
362 PF13174 TPR_6: Tetratricopept 63.4 14 0.00029 22.2 3.6 25 472-496 4-28 (33)
363 KOG0889 Histone acetyltransfer 63.3 5.3E+02 0.012 35.1 26.3 47 553-599 2790-2841(3550)
364 TIGR03504 FimV_Cterm FimV C-te 63.3 13 0.00029 24.8 3.6 24 298-321 5-28 (44)
365 PF10579 Rapsyn_N: Rapsyn N-te 63.1 22 0.00048 27.1 5.1 46 480-525 18-65 (80)
366 KOG0687 26S proteasome regulat 62.7 1.7E+02 0.0038 29.3 13.6 133 393-529 66-207 (393)
367 KOG2396 HAT (Half-A-TPR) repea 62.2 2.2E+02 0.0048 30.4 37.6 407 169-596 89-556 (568)
368 COG2909 MalT ATP-dependent tra 60.7 3.1E+02 0.0068 31.6 29.3 194 337-531 425-646 (894)
369 PF07163 Pex26: Pex26 protein; 60.5 1.2E+02 0.0025 29.8 10.5 59 193-251 89-147 (309)
370 PF04097 Nic96: Nup93/Nic96; 59.5 3E+02 0.0065 31.0 20.2 42 263-305 117-158 (613)
371 KOG3807 Predicted membrane pro 58.7 2E+02 0.0044 28.8 13.2 18 444-461 286-303 (556)
372 COG5187 RPN7 26S proteasome re 57.9 2E+02 0.0043 28.4 13.6 171 274-447 55-241 (412)
373 PF07163 Pex26: Pex26 protein; 57.0 2E+02 0.0044 28.2 13.1 87 229-315 90-181 (309)
374 PHA02875 ankyrin repeat protei 56.1 1.7E+02 0.0036 31.0 12.7 198 198-417 10-219 (413)
375 KOG1308 Hsp70-interacting prot 55.1 8.2 0.00018 38.4 2.1 116 480-596 126-241 (377)
376 PF10579 Rapsyn_N: Rapsyn N-te 54.1 44 0.00096 25.6 5.3 47 445-491 18-66 (80)
377 KOG2391 Vacuolar sorting prote 53.7 2.5E+02 0.0054 28.3 14.7 50 221-271 298-347 (365)
378 KOG0530 Protein farnesyltransf 52.6 2.3E+02 0.005 27.6 18.3 168 374-546 55-230 (318)
379 PF10345 Cohesin_load: Cohesin 52.3 3.9E+02 0.0085 30.1 35.2 49 479-527 372-428 (608)
380 COG0790 FOG: TPR repeat, SEL1 51.5 2.6E+02 0.0056 27.8 23.1 50 234-286 53-106 (292)
381 KOG2063 Vacuolar assembly/sort 51.3 4.6E+02 0.01 30.7 19.9 116 260-375 507-639 (877)
382 PF11846 DUF3366: Domain of un 51.2 86 0.0019 29.0 8.3 36 499-534 140-175 (193)
383 KOG0376 Serine-threonine phosp 50.9 29 0.00062 36.5 5.3 99 444-546 15-115 (476)
384 KOG2297 Predicted translation 50.2 2.7E+02 0.0059 27.7 17.6 234 218-490 107-343 (412)
385 KOG2659 LisH motif-containing 50.1 2E+02 0.0043 27.3 10.1 98 183-282 22-128 (228)
386 PF14689 SPOB_a: Sensor_kinase 49.6 45 0.00098 24.2 4.8 25 471-495 26-50 (62)
387 PF09477 Type_III_YscG: Bacter 49.3 1.2E+02 0.0027 24.8 7.4 75 412-494 21-95 (116)
388 PF09670 Cas_Cas02710: CRISPR- 48.8 3E+02 0.0065 28.8 12.6 56 195-251 139-198 (379)
389 KOG2422 Uncharacterized conser 48.7 4E+02 0.0086 29.2 19.9 155 440-597 349-514 (665)
390 KOG4507 Uncharacterized conser 48.7 1.3E+02 0.0028 32.7 9.6 88 198-286 618-705 (886)
391 KOG4077 Cytochrome c oxidase, 48.6 1.3E+02 0.0028 25.6 7.6 47 345-391 67-113 (149)
392 TIGR02508 type_III_yscG type I 48.5 1.5E+02 0.0032 24.1 8.5 50 372-427 49-98 (115)
393 KOG1464 COP9 signalosome, subu 48.3 2.7E+02 0.0058 27.1 30.6 225 297-528 70-328 (440)
394 KOG1464 COP9 signalosome, subu 48.2 2.7E+02 0.0059 27.1 18.4 189 306-495 41-259 (440)
395 PRK10941 hypothetical protein; 46.9 1.6E+02 0.0034 29.1 9.5 65 472-538 185-250 (269)
396 KOG3807 Predicted membrane pro 46.0 3.3E+02 0.0071 27.4 13.1 109 200-323 229-342 (556)
397 PF11663 Toxin_YhaV: Toxin wit 45.5 23 0.0005 30.2 3.0 34 478-513 105-138 (140)
398 PF13762 MNE1: Mitochondrial s 44.7 2.2E+02 0.0047 25.0 10.8 79 330-408 42-126 (145)
399 KOG2063 Vacuolar assembly/sort 44.7 5.8E+02 0.013 29.9 17.3 117 294-410 506-639 (877)
400 KOG0890 Protein kinase of the 44.5 8.7E+02 0.019 31.9 31.8 150 297-457 1388-1542(2382)
401 KOG4279 Serine/threonine prote 44.3 3.3E+02 0.0071 30.8 11.9 117 153-271 200-334 (1226)
402 PF07575 Nucleopor_Nup85: Nup8 43.9 63 0.0014 36.0 7.2 63 256-320 404-466 (566)
403 KOG4077 Cytochrome c oxidase, 43.7 2E+02 0.0044 24.4 8.9 44 487-530 68-111 (149)
404 PF08424 NRDE-2: NRDE-2, neces 43.7 3.7E+02 0.008 27.3 20.8 78 449-528 47-127 (321)
405 PF11846 DUF3366: Domain of un 43.2 96 0.0021 28.7 7.3 32 430-461 141-172 (193)
406 KOG4507 Uncharacterized conser 42.8 96 0.0021 33.6 7.6 148 359-510 568-717 (886)
407 cd08819 CARD_MDA5_2 Caspase ac 42.6 1.6E+02 0.0034 23.2 6.8 15 235-249 49-63 (88)
408 PF11848 DUF3368: Domain of un 42.4 86 0.0019 21.3 5.0 31 199-229 14-44 (48)
409 COG5159 RPN6 26S proteasome re 42.1 3.5E+02 0.0076 26.7 15.4 32 333-364 9-40 (421)
410 PF11848 DUF3368: Domain of un 41.4 1E+02 0.0022 21.0 5.2 32 479-510 13-44 (48)
411 PF13762 MNE1: Mitochondrial s 41.3 2.5E+02 0.0054 24.7 10.7 82 188-269 40-127 (145)
412 KOG0687 26S proteasome regulat 41.2 3.9E+02 0.0085 26.9 15.6 65 258-322 105-174 (393)
413 KOG2062 26S proteasome regulat 41.1 5.9E+02 0.013 28.9 27.5 154 157-321 65-239 (929)
414 PRK11619 lytic murein transgly 41.1 5.9E+02 0.013 28.9 29.3 322 194-529 40-372 (644)
415 cd00280 TRFH Telomeric Repeat 40.9 2.9E+02 0.0063 25.3 11.2 20 266-285 120-139 (200)
416 TIGR02508 type_III_yscG type I 39.9 2E+02 0.0044 23.3 9.9 79 166-252 20-98 (115)
417 PF09477 Type_III_YscG: Bacter 39.4 2.2E+02 0.0047 23.5 9.9 81 164-252 19-99 (116)
418 PF08311 Mad3_BUB1_I: Mad3/BUB 39.2 2.4E+02 0.0053 24.0 9.1 42 451-492 81-123 (126)
419 PRK13342 recombination factor 39.1 5E+02 0.011 27.5 19.7 21 306-326 244-264 (413)
420 KOG4279 Serine/threonine prote 39.0 5.9E+02 0.013 28.9 12.8 120 169-294 181-322 (1226)
421 cd00280 TRFH Telomeric Repeat 38.0 2.2E+02 0.0047 26.1 8.0 22 404-425 118-139 (200)
422 KOG0545 Aryl-hydrocarbon recep 37.9 3.8E+02 0.0083 25.9 11.9 69 471-540 233-301 (329)
423 COG4941 Predicted RNA polymera 37.8 4.5E+02 0.0098 26.7 11.0 112 483-598 271-393 (415)
424 PF14853 Fis1_TPR_C: Fis1 C-te 37.5 1.2E+02 0.0026 21.2 5.1 29 474-504 7-35 (53)
425 PF14669 Asp_Glu_race_2: Putat 37.4 3.4E+02 0.0073 25.1 14.9 55 367-421 137-205 (233)
426 PF13929 mRNA_stabil: mRNA sta 37.4 4.3E+02 0.0092 26.3 22.3 117 376-492 142-262 (292)
427 PF14689 SPOB_a: Sensor_kinase 37.0 78 0.0017 23.0 4.4 21 228-248 29-49 (62)
428 KOG0128 RNA-binding protein SA 36.9 7.1E+02 0.015 28.7 32.8 57 445-502 474-531 (881)
429 KOG4642 Chaperone-dependent E3 36.9 3.9E+02 0.0085 25.7 11.0 12 666-677 235-246 (284)
430 KOG2908 26S proteasome regulat 36.5 3.3E+02 0.0071 27.6 9.7 88 188-275 76-175 (380)
431 PRK15180 Vi polysaccharide bio 35.9 5.7E+02 0.012 27.3 27.3 107 142-251 313-420 (831)
432 PF15297 CKAP2_C: Cytoskeleton 35.8 4E+02 0.0086 27.2 10.3 63 204-268 120-186 (353)
433 PF11817 Foie-gras_1: Foie gra 35.7 1.9E+02 0.004 28.1 8.2 22 402-423 183-204 (247)
434 PF12862 Apc5: Anaphase-promot 35.4 2.2E+02 0.0048 22.6 7.3 19 477-495 50-68 (94)
435 PF11663 Toxin_YhaV: Toxin wit 35.1 41 0.00089 28.7 3.0 33 197-231 105-137 (140)
436 KOG0376 Serine-threonine phosp 35.0 58 0.0013 34.3 4.6 107 476-584 12-119 (476)
437 PF09986 DUF2225: Uncharacteri 35.0 3.8E+02 0.0082 25.4 9.9 24 298-321 171-194 (214)
438 COG2178 Predicted RNA-binding 34.7 3.7E+02 0.0081 24.8 10.1 18 232-249 39-56 (204)
439 PF12862 Apc5: Anaphase-promot 34.5 1.7E+02 0.0036 23.3 6.5 24 438-461 46-69 (94)
440 PF09986 DUF2225: Uncharacteri 34.4 4.1E+02 0.0088 25.2 10.0 62 471-532 121-194 (214)
441 KOG0292 Vesicle coat complex C 34.1 2.5E+02 0.0054 32.3 9.3 128 443-597 653-780 (1202)
442 KOG1308 Hsp70-interacting prot 34.0 31 0.00068 34.5 2.5 90 515-604 126-216 (377)
443 KOG1924 RhoA GTPase effector D 33.7 2.2E+02 0.0048 32.1 8.7 10 628-637 1042-1051(1102)
444 PF04910 Tcf25: Transcriptiona 33.7 5.6E+02 0.012 26.6 17.5 95 440-536 110-226 (360)
445 COG0735 Fur Fe2+/Zn2+ uptake r 33.4 2E+02 0.0042 25.3 7.2 44 368-411 26-69 (145)
446 KOG3824 Huntingtin interacting 32.7 68 0.0015 31.6 4.3 64 478-542 126-189 (472)
447 KOG3824 Huntingtin interacting 32.6 2E+02 0.0044 28.5 7.5 53 443-496 126-178 (472)
448 PF14561 TPR_20: Tetratricopep 32.3 2.5E+02 0.0055 22.2 9.1 33 430-462 19-51 (90)
449 COG5108 RPO41 Mitochondrial DN 32.1 3.7E+02 0.0081 29.9 9.9 91 367-461 33-131 (1117)
450 PRK10564 maltose regulon perip 32.0 87 0.0019 31.1 5.1 35 290-324 254-289 (303)
451 PF11817 Foie-gras_1: Foie gra 31.9 2.2E+02 0.0047 27.7 8.0 56 298-353 184-244 (247)
452 PF10475 DUF2450: Protein of u 31.3 4.4E+02 0.0095 26.3 10.3 22 333-354 133-154 (291)
453 PF10255 Paf67: RNA polymerase 31.2 2.6E+02 0.0056 29.4 8.6 96 396-495 74-191 (404)
454 PF10475 DUF2450: Protein of u 30.6 5.6E+02 0.012 25.6 13.9 54 261-320 102-155 (291)
455 KOG0530 Protein farnesyltransf 30.6 5.3E+02 0.011 25.3 12.9 120 478-601 53-178 (318)
456 PRK10564 maltose regulon perip 30.5 95 0.0021 30.8 5.1 30 399-428 259-288 (303)
457 COG2178 Predicted RNA-binding 30.1 4.5E+02 0.0097 24.4 9.8 19 336-354 38-56 (204)
458 PF10366 Vps39_1: Vacuolar sor 30.0 2.9E+02 0.0063 22.8 7.2 26 436-461 42-67 (108)
459 smart00386 HAT HAT (Half-A-TPR 29.8 1.1E+02 0.0024 17.7 3.8 23 518-540 2-24 (33)
460 PF11838 ERAP1_C: ERAP1-like C 29.8 5.9E+02 0.013 25.6 19.0 88 413-503 146-237 (324)
461 KOG2005 26S proteasome regulat 29.1 8.6E+02 0.019 27.3 23.1 188 412-600 449-652 (878)
462 PF08311 Mad3_BUB1_I: Mad3/BUB 28.9 3.6E+02 0.0079 22.9 9.4 44 415-458 81-124 (126)
463 COG5108 RPO41 Mitochondrial DN 28.4 4.1E+02 0.0089 29.6 9.5 90 192-284 33-130 (1117)
464 COG0735 Fur Fe2+/Zn2+ uptake r 27.8 3.4E+02 0.0074 23.8 7.7 60 211-271 10-69 (145)
465 PRK10941 hypothetical protein; 27.7 6E+02 0.013 25.1 11.4 59 437-496 185-243 (269)
466 PRK13800 putative oxidoreducta 27.6 1.1E+03 0.024 28.1 29.0 247 220-496 633-880 (897)
467 COG4976 Predicted methyltransf 26.6 1.1E+02 0.0023 29.1 4.4 55 442-497 4-58 (287)
468 PF04090 RNA_pol_I_TF: RNA pol 26.1 5.4E+02 0.012 24.0 11.0 42 573-615 142-183 (199)
469 PF15297 CKAP2_C: Cytoskeleton 26.1 7.2E+02 0.016 25.4 10.3 63 239-303 120-186 (353)
470 KOG2034 Vacuolar sorting prote 26.1 1.1E+03 0.024 27.5 29.5 49 331-388 508-556 (911)
471 KOG4567 GTPase-activating prot 25.8 6.9E+02 0.015 25.1 9.7 43 348-390 264-306 (370)
472 KOG2908 26S proteasome regulat 25.4 7.3E+02 0.016 25.3 13.4 88 226-313 79-178 (380)
473 PHA03100 ankyrin repeat protei 25.3 5.3E+02 0.012 27.8 10.6 10 212-221 53-62 (480)
474 KOG4121 Nuclear pore complex, 24.9 4.2E+02 0.0092 31.1 9.3 20 475-494 779-798 (1128)
475 COG2812 DnaX DNA polymerase II 24.7 8E+02 0.017 26.9 11.2 25 269-293 257-281 (515)
476 KOG0686 COP9 signalosome, subu 24.4 8.4E+02 0.018 25.6 15.2 26 259-284 152-177 (466)
477 PRK02260 S-ribosylhomocysteina 24.4 1.6E+02 0.0034 26.2 4.8 54 624-677 95-148 (158)
478 KOG0292 Vesicle coat complex C 24.3 2.1E+02 0.0045 32.9 6.7 48 557-604 1069-1118(1202)
479 KOG1114 Tripeptidyl peptidase 24.1 1.2E+03 0.027 27.4 13.9 163 344-517 1092-1281(1304)
480 PRK08691 DNA polymerase III su 23.8 1.1E+03 0.025 26.9 16.0 99 378-502 180-279 (709)
481 KOG4567 GTPase-activating prot 23.6 4.1E+02 0.009 26.6 7.8 57 453-514 263-319 (370)
482 TIGR02270 conserved hypothetic 23.6 9E+02 0.019 25.6 27.9 181 290-494 98-278 (410)
483 PRK09857 putative transposase; 23.5 5.7E+02 0.012 25.6 9.3 64 332-396 211-274 (292)
484 smart00777 Mad3_BUB1_I Mad3/BU 23.4 4.7E+02 0.01 22.3 9.6 42 486-527 81-123 (125)
485 PF07575 Nucleopor_Nup85: Nup8 23.3 1.9E+02 0.0042 32.2 6.7 63 291-355 404-466 (566)
486 PF13934 ELYS: Nuclear pore co 23.3 6.6E+02 0.014 24.0 11.0 20 474-493 114-133 (226)
487 PF10366 Vps39_1: Vacuolar sor 23.3 4.3E+02 0.0092 21.8 7.3 26 225-250 42-67 (108)
488 KOG3636 Uncharacterized conser 23.2 9E+02 0.02 25.5 14.1 90 388-479 174-271 (669)
489 PF09868 DUF2095: Uncharacteri 23.1 2.9E+02 0.0063 22.9 5.6 25 193-217 67-91 (128)
490 TIGR01228 hutU urocanate hydra 22.9 8.1E+02 0.018 26.4 10.2 174 235-427 207-423 (545)
491 PF06957 COPI_C: Coatomer (COP 22.8 3.5E+02 0.0076 28.6 7.9 39 497-535 292-332 (422)
492 cd08780 Death_TRADD Death Doma 22.6 3.3E+02 0.0072 21.4 5.6 55 539-594 34-89 (90)
493 PF09454 Vps23_core: Vps23 cor 22.5 1.5E+02 0.0033 21.8 3.7 59 253-312 4-62 (65)
494 PRK13342 recombination factor 22.2 9.5E+02 0.021 25.4 20.5 35 375-409 243-277 (413)
495 PRK08691 DNA polymerase III su 22.1 1.2E+03 0.026 26.8 12.1 31 252-284 195-225 (709)
496 PHA02537 M terminase endonucle 22.1 81 0.0017 30.1 2.9 130 455-600 70-208 (230)
497 PF11768 DUF3312: Protein of u 21.5 9.8E+02 0.021 26.2 10.8 122 228-357 414-537 (545)
498 PF00244 14-3-3: 14-3-3 protei 21.3 7.4E+02 0.016 23.8 13.9 44 553-597 148-196 (236)
499 PRK09462 fur ferric uptake reg 21.3 4.1E+02 0.0089 23.2 7.1 64 348-411 3-66 (148)
500 PRK07003 DNA polymerase III su 21.3 1.3E+03 0.029 26.8 15.4 148 204-354 181-352 (830)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.2e-73 Score=646.35 Aligned_cols=541 Identities=19% Similarity=0.295 Sum_probs=495.7
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 005178 160 ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFD 239 (710)
Q Consensus 160 ~l~~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 239 (710)
.+...++++.|..+|+.|.+.+ +.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~G-l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~e 524 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAG-LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHH
Confidence 3444557999999999998865 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005178 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVA--SGWKPDPIAFSVLGKMFGESGDYDGIRYVLQE 317 (710)
Q Consensus 240 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 317 (710)
+|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|++||.+|++.|++++|.++|++
T Consensus 525 eAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999986 67899999999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 005178 318 MKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDF 397 (710)
Q Consensus 318 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 397 (710)
|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||.
T Consensus 605 M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~ 684 (1060)
T PLN03218 605 IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684 (1060)
T ss_pred HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 005178 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477 (710)
Q Consensus 398 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 477 (710)
.+|++||.+|++.|++++|.++|++|.+.+. .||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.++.+
T Consensus 685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~-~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a 763 (1060)
T PLN03218 685 VSYSSLMGACSNAKNWKKALELYEDIKSIKL-RPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA 763 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999886 899999999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c-------------------CChHHHHHHHHHHHH--h
Q 005178 478 LGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSL----C-------------------ETSEDVGKVITCLQQ--A 532 (710)
Q Consensus 478 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~-------------------g~~~~a~~~~~~~~~--~ 532 (710)
|++.|++++|.++|++|.+.|+.||..+|++++..|.+ + +..++|..+|++|.+ +
T Consensus 764 ~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi 843 (1060)
T PLN03218 764 SERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGT 843 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999976542 1 123678899999976 5
Q ss_pred CCcHHHHHHHHHhhcCCcccHHHHHHHHHHhccCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcccccc
Q 005178 533 NPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVD---ARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKT 609 (710)
Q Consensus 533 ~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 609 (710)
.|+..++..+|+. ....+ ....+..+++.+... |+..+|++|+++|.+. .++|..+|++|...|+.|++..+.
T Consensus 844 ~Pd~~T~~~vL~c-l~~~~-~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~~~~ 919 (1060)
T PLN03218 844 LPTMEVLSQVLGC-LQLPH-DATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVSFKK 919 (1060)
T ss_pred CCCHHHHHHHHHH-hcccc-cHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCccccc
Confidence 7999999888854 33333 567788888877554 4566999999998443 478999999999999999998755
Q ss_pred cccchhcccccChHHHHHHHHHHHHHHHHHHHhccCCCCeeE--------EEeccCcccch--hhHHHHHHHHhhhcCCC
Q 005178 610 LDEWSLDVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQLFL--------AETGTGTHKFS--QGLATAFASHVNKLAAP 679 (710)
Q Consensus 610 ~~~w~~~~~~~~~G~~~~Al~~~~~~~~~~~~~~~~~p~~~~--------i~~~~~~~~~~--~~~~~~~~~~l~~l~~~ 679 (710)
. .|..+++.++.|.++.|+..|++.++.+.+.|..+|++.. +.++.|.|.+. .++.++|.++|++|+.|
T Consensus 920 ~-~~~~d~~~~~~~aa~~~l~~wl~~~~~~~~~g~~lp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~l~~~ 998 (1060)
T PLN03218 920 S-PIVIDAEELPVFAAEVYLLTILKGLKHRLAAGAKLPNVTILLPTEKKEIYTPKGEKTINLAGRVGQAVAALLRRLGLP 998 (1060)
T ss_pred C-ceEEEcccCcchhHHHHHHHHHHHHHHHHhccCcCCcceeeeccccceeeccCCchhHHHHHHHHHHHHHHHHHhCCC
Confidence 5 9999999999999999999999999999999999999999 44444444333 23689999999999999
Q ss_pred ccccCCCCceEEechHHHHHHHhcCCCCC
Q 005178 680 FRQSEGKAGCFVATREDLVSWVQARPSSI 708 (710)
Q Consensus 680 ~~~~~~~~g~~~~~~~~~~~w~~~~~~~~ 708 (710)
|+.+++. |||..|+.++++||+.+..+|
T Consensus 999 ~~~~~~~-g~~~~~~~~~~~wl~~~~~~~ 1026 (1060)
T PLN03218 999 YQGSESH-GKLRINGLSLRRWFQPKLKSP 1026 (1060)
T ss_pred CCCCCCC-CeEEeccHHHHHHhcccCCCC
Confidence 9999988 999999999999999986554
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.5e-63 Score=562.84 Aligned_cols=507 Identities=17% Similarity=0.256 Sum_probs=464.8
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 005178 159 LILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLF 238 (710)
Q Consensus 159 ~~l~~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 238 (710)
..+...+++++|+.+|++|....++.||..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+|+.++.+|++.|++
T Consensus 95 ~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~ 174 (697)
T PLN03081 95 EKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGML 174 (697)
T ss_pred HHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCH
Confidence 33455667899999999999876678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005178 239 DEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEM 318 (710)
Q Consensus 239 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 318 (710)
++|.++|++|.+ ||..+||.++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.+|++.|..+.+.+++..+
T Consensus 175 ~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~ 250 (697)
T PLN03081 175 IDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCV 250 (697)
T ss_pred HHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 999999999964 7999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 005178 319 KSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFI 398 (710)
Q Consensus 319 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 398 (710)
.+.|+.+|..+|+.|+++|++.|++++|.++|++|. .+|.++|+++|.+|++.|+.++|+++|++|.+.|+.||..
T Consensus 251 ~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~ 326 (697)
T PLN03081 251 LKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQF 326 (697)
T ss_pred HHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 999999999999999999999999999999999996 5699999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 005178 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL 478 (710)
Q Consensus 399 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 478 (710)
+|+.++.+|++.|++++|.+++..|.+.|. .||..+|++||++|+++|++++|.++|++|.+ ||..+|++||.+|
T Consensus 327 t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~-~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y 401 (697)
T PLN03081 327 TFSIMIRIFSRLALLEHAKQAHAGLIRTGF-PLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGY 401 (697)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhCC-CCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHH
Confidence 999999999999999999999999999996 89999999999999999999999999999975 7999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH---hCCcHH---HHHHHHHhhcCCccc
Q 005178 479 GKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ---ANPKLV---AFLNLIEDNSTGFEN 552 (710)
Q Consensus 479 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~p~~~---~~~~~L~~~~~~~~~ 552 (710)
+++|+.++|+++|++|.+.|+.||..||+.++.+|.+.|+.++|.++|+.|.+ +.|+.. .+++.|++. |
T Consensus 402 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~----G- 476 (697)
T PLN03081 402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGRE----G- 476 (697)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhc----C-
Confidence 99999999999999999999999999999999999999999999999999964 567643 355666652 5
Q ss_pred HHHHHHHHHHhccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcccccccccchhcccccC-hHHHHHHHHH
Q 005178 553 IKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLS-VGAAQTALEE 631 (710)
Q Consensus 553 ~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~-~G~~~~Al~~ 631 (710)
..++|.+++++++..|+..+|++|+.+|+++|+++.|.++++++.. +.|+ +...|..++..+. .|..++|.+.
T Consensus 477 ~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~----~~~~y~~L~~~y~~~G~~~~A~~v 550 (697)
T PLN03081 477 LLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPE----KLNNYVVLLNLYNSSGRQAEAAKV 550 (697)
T ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCC----CCcchHHHHHHHHhCCCHHHHHHH
Confidence 7899999999999999999999999999999999999999998763 3343 4556777777774 5999999887
Q ss_pred HHHHHHHHHHhc-cCCCCeeEEEeccCcccchhhH-----HHHHHHHhhhcCCCccccCCCCceEEechHHH
Q 005178 632 WMWTLAKIVLRE-EVLPQLFLAETGTGTHKFSQGL-----ATAFASHVNKLAAPFRQSEGKAGCFVATREDL 697 (710)
Q Consensus 632 ~~~~~~~~~~~~-~~~p~~~~i~~~~~~~~~~~~~-----~~~~~~~l~~l~~~~~~~~~~~g~~~~~~~~~ 697 (710)
+.+ +.++| ++.|+++||+.+.+.|.|..|+ .+.|+..|.++...+++. ||...+..++
T Consensus 551 ~~~----m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~----gy~~~~~~~~ 614 (697)
T PLN03081 551 VET----LKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEY----GYVAEENELL 614 (697)
T ss_pred HHH----HHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHc----CCCCCcchhh
Confidence 755 45678 8999999999999999999765 678899999888888876 7776665443
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.7e-61 Score=557.55 Aligned_cols=526 Identities=16% Similarity=0.174 Sum_probs=426.0
Q ss_pred cCCCCHHHHHHHHhhCCCCCCH----------------------HHHHHHHHhccCHHHHHHHHHHHHhCCCCCCcHHHH
Q 005178 133 DCDNTEEAFLRAITEIPHQPTR----------------------ENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFY 190 (710)
Q Consensus 133 ~~~~~~~~~~~~l~~~~~~~~~----------------------~~~~~~l~~l~~~~~A~~~~~~~~~~~~~~~~~~~~ 190 (710)
+..|+...+..+++.+...+.. ..++..+...++++.|..+|+.|. .+|.++|
T Consensus 182 g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-----~~d~~s~ 256 (857)
T PLN03077 182 GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP-----RRDCISW 256 (857)
T ss_pred CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC-----CCCcchh
Confidence 4556766776666655432221 223344455567888999998873 5688889
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 005178 191 NVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270 (710)
Q Consensus 191 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 270 (710)
|++|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|.+.|+.+.|.+++..|.+.|+.||..+|++|+.+|++.
T Consensus 257 n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~ 336 (857)
T PLN03077 257 NAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSL 336 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 005178 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350 (710)
Q Consensus 271 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 350 (710)
|++++|.++|++|. .||..+|+++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++
T Consensus 337 g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~ 412 (857)
T PLN03077 337 GSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLH 412 (857)
T ss_pred CCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHH
Confidence 99999999998886 37888899999999999999999999999988888888888888888888888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 005178 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCK 430 (710)
Q Consensus 351 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 430 (710)
+.|.+.|+.|+..+|+.|+.+|++.|++++|.++|++|.+. |..+|+++|.+|++.|+.++|.++|++|... . +
T Consensus 413 ~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~----d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~-~-~ 486 (857)
T PLN03077 413 ELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQMLLT-L-K 486 (857)
T ss_pred HHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC----CeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC-C-C
Confidence 88888888888888888888888888888888888887643 6667777777777777777777777777642 2 5
Q ss_pred CCHHHHHHHH-----------------------------------HHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 005178 431 PDNYSYTAML-----------------------------------NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLI 475 (710)
Q Consensus 431 ~~~~~~~~li-----------------------------------~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 475 (710)
||..||+.++ ++|+++|++++|.++|++| .+|..+|+++|
T Consensus 487 pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI 561 (857)
T PLN03077 487 PNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILL 561 (857)
T ss_pred CCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHH
Confidence 6666665544 5555566666666666555 47889999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH---hCCcHHH---HHHHHHhhcCC
Q 005178 476 QCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ---ANPKLVA---FLNLIEDNSTG 549 (710)
Q Consensus 476 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~p~~~~---~~~~L~~~~~~ 549 (710)
.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|.+ +.|+..+ ++++|+++
T Consensus 562 ~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~--- 638 (857)
T PLN03077 562 TGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRA--- 638 (857)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhC---
Confidence 99999999999999999999999999999999999999999999999999999973 5787544 44666652
Q ss_pred cccHHHHHHHHHHhccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcccccccccchhcccccC-hHHHHHH
Q 005178 550 FENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLS-VGAAQTA 628 (710)
Q Consensus 550 ~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~-~G~~~~A 628 (710)
| ..++|.+++++|+.+|+..+|++|+.+|..+|+.+.|+.+.+++.+. .|+ +...|..+...|. .|.+++|
T Consensus 639 -G-~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l--~p~----~~~~y~ll~n~ya~~g~~~~a 710 (857)
T PLN03077 639 -G-KLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFEL--DPN----SVGYYILLCNLYADAGKWDEV 710 (857)
T ss_pred -C-CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--CCC----CcchHHHHHHHHHHCCChHHH
Confidence 5 78999999999999999999999999999999999999888877642 333 4555665555553 4888886
Q ss_pred HHHHHHHHHHHHHhc-cCCCCeeEEEeccCcccchhhH-----HHHHHHHhhhcCCCccccCCCCceEEechHHH
Q 005178 629 LEEWMWTLAKIVLRE-EVLPQLFLAETGTGTHKFSQGL-----ATAFASHVNKLAAPFRQSEGKAGCFVATREDL 697 (710)
Q Consensus 629 l~~~~~~~~~~~~~~-~~~p~~~~i~~~~~~~~~~~~~-----~~~~~~~l~~l~~~~~~~~~~~g~~~~~~~~~ 697 (710)
...... +.++| ++.||++||+.++..|.|..|+ .+.|+.+|++|...++.. ||...++.++
T Consensus 711 ~~vr~~----M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~----g~~~~~~~~~ 777 (857)
T PLN03077 711 ARVRKT----MRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKAS----GLAGSESSSM 777 (857)
T ss_pred HHHHHH----HHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhC----CcCCCcchhc
Confidence 554433 44688 9999999999999999999776 788999999999888876 8776665443
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.6e-59 Score=531.57 Aligned_cols=454 Identities=18% Similarity=0.293 Sum_probs=371.2
Q ss_pred hCCCCCCHHHHHHHHHhc---cCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHH
Q 005178 147 EIPHQPTRENALLILNSL---KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNI 223 (710)
Q Consensus 147 ~~~~~~~~~~~~~~l~~l---~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 223 (710)
.............+++.+ +++++|+++|++|.+.+.++++...++.++..|.+.|.+++|..+|+.|.. ||..
T Consensus 363 ~~~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~ 438 (1060)
T PLN03218 363 GVSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLS 438 (1060)
T ss_pred ccCCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHH
Confidence 344444555555555555 578889999998888766677888888888888888888888888888764 7888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005178 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303 (710)
Q Consensus 224 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 303 (710)
+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|+
T Consensus 439 Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~ 518 (1060)
T PLN03218 439 TFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCA 518 (1060)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005178 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVE--SGLTPDEKTLTALIKIYGKARWAKDA 381 (710)
Q Consensus 304 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~~~~~li~~~~~~g~~~~A 381 (710)
+.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|+++|.+|++.|++++|
T Consensus 519 k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA 598 (1060)
T PLN03218 519 RAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRA 598 (1060)
T ss_pred HCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 8888888888888888888888888888888888888888888888888875 56788888888888888888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 005178 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461 (710)
Q Consensus 382 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (710)
.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|. .||..+|+.+|++|++.|++++|.++|++|.+
T Consensus 599 ~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv-~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k 677 (1060)
T PLN03218 599 KEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGV-KPDEVFFSALVDVAGHAGDLDKAFEILQDARK 677 (1060)
T ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888885 78888888888888888888888888888888
Q ss_pred cCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH--hCCcHHHH
Q 005178 462 LGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ--ANPKLVAF 539 (710)
Q Consensus 462 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~ 539 (710)
.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+ +.|+..++
T Consensus 678 ~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty 757 (1060)
T PLN03218 678 QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITY 757 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 8888888888888888888888888888888888888888888888888888888888888888888864 56887776
Q ss_pred HHHHHhhcCCcccHHHHHHHHHHhc---cCCCChhhHHHHHHHHHh----C-------------------CCHHHHHHHH
Q 005178 540 LNLIEDNSTGFENIKEEFRNVIKDT---EVDARRPFCNCLIDICRN----R-------------------NLNERAHELL 593 (710)
Q Consensus 540 ~~~L~~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~ 593 (710)
..++..+ ...| ..++|.+++..| +..||..+|++|+++|.+ . +..++|..+|
T Consensus 758 ~sLL~a~-~k~G-~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf 835 (1060)
T PLN03218 758 SILLVAS-ERKD-DADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVY 835 (1060)
T ss_pred HHHHHHH-HHCC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHH
Confidence 6666432 3334 566677666654 667888888888877542 1 2246788889
Q ss_pred HHHHHcCCCCcccc
Q 005178 594 YLGTLYGLYPGLHN 607 (710)
Q Consensus 594 ~~~~~~~~~~~~~~ 607 (710)
++|.+.|+.|+..+
T Consensus 836 ~eM~~~Gi~Pd~~T 849 (1060)
T PLN03218 836 RETISAGTLPTMEV 849 (1060)
T ss_pred HHHHHCCCCCCHHH
Confidence 99998898887544
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=8.8e-56 Score=499.62 Aligned_cols=430 Identities=19% Similarity=0.244 Sum_probs=396.3
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 005178 157 ALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCN 236 (710)
Q Consensus 157 ~~~~l~~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g 236 (710)
++..+...++++.|.+++..+.+.+ +.||..+||.++.+|+++|++++|.++|++|.+ ||..+|+++|.+|++.|
T Consensus 129 ll~a~~~~~~~~~a~~l~~~m~~~g-~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g 203 (697)
T PLN03081 129 LVEACIALKSIRCVKAVYWHVESSG-FEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAG 203 (697)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCc
Confidence 3344555567889999999998865 889999999999999999999999999999974 79999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005178 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQ 316 (710)
Q Consensus 237 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 316 (710)
++++|+++|++|.+.|+.|+..+|+.++.+|++.|..+.+.+++..+.+.|+.+|..+|++||.+|++.|++++|.++|+
T Consensus 204 ~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~ 283 (697)
T PLN03081 204 NYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFD 283 (697)
T ss_pred CHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 005178 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMD 396 (710)
Q Consensus 317 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 396 (710)
+|. .+|.++||+||.+|++.|++++|.++|++|.+.|+.||..||++++.+|++.|++++|.+++..|.+.|+.||
T Consensus 284 ~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d 359 (697)
T PLN03081 284 GMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLD 359 (697)
T ss_pred hCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCC
Confidence 996 4699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 005178 397 FILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476 (710)
Q Consensus 397 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 476 (710)
..+|++||++|++.|++++|.++|++|. .||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.++.
T Consensus 360 ~~~~~~Li~~y~k~G~~~~A~~vf~~m~-----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~ 434 (697)
T PLN03081 360 IVANTALVDLYSKWGRMEDARNVFDRMP-----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLS 434 (697)
T ss_pred eeehHHHHHHHHHCCCHHHHHHHHHhCC-----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 9999999999999999999999999996 58999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHH
Q 005178 477 CLGKARRIDDLVRVFGVSID-RGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKE 555 (710)
Q Consensus 477 ~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~ 555 (710)
+|++.|.+++|.++|+.|.+ .|+.|+..+|++++.+|.+.|++++|.++++++ ...|+...+..+|..+ ...| ..+
T Consensus 435 a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p~~~~~~~Ll~a~-~~~g-~~~ 511 (697)
T PLN03081 435 ACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKPTVNMWAALLTAC-RIHK-NLE 511 (697)
T ss_pred HHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCCCHHHHHHHHHHH-HHcC-CcH
Confidence 99999999999999999985 799999999999999999999999999999876 3567776655555543 2234 456
Q ss_pred HHHHHHHhc-cCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Q 005178 556 EFRNVIKDT-EVDAR-RPFCNCLIDICRNRNLNERAHELLYLGTLYGLYP 603 (710)
Q Consensus 556 ~a~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 603 (710)
.+....+.+ ..+|+ ...|..|+++|.+.|++++|.+++++|.+.|+..
T Consensus 512 ~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k 561 (697)
T PLN03081 512 LGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSM 561 (697)
T ss_pred HHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCcc
Confidence 666666553 56665 4489999999999999999999999999998764
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.7e-56 Score=517.56 Aligned_cols=453 Identities=17% Similarity=0.203 Sum_probs=376.8
Q ss_pred HHHHHhccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 005178 158 LLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNL 237 (710)
Q Consensus 158 ~~~l~~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~ 237 (710)
+..+...++.+.|..+|+.|. +||+++||++|.+|++.|++++|+++|++|...|+.||..||+.+|.+|.+.++
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~-----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~ 202 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMP-----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPD 202 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCC-----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccc
Confidence 344455667888999998884 578899999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005178 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQE 317 (710)
Q Consensus 238 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 317 (710)
++.+.+++..|.+.|+.||..+|++|+.+|++.|++++|.++|++|.. +|..+||+||.+|++.|++++|+++|++
T Consensus 203 ~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~ 278 (857)
T PLN03077 203 LARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFT 278 (857)
T ss_pred hhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHH
Confidence 888888888888888888888888888888888888888888888863 6888888888888888888888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 005178 318 MKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDF 397 (710)
Q Consensus 318 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 397 (710)
|.+.|+.||..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+|++|+.+|++.|++++|.++|++|.+ ||.
T Consensus 279 M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~ 354 (857)
T PLN03077 279 MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDA 354 (857)
T ss_pred HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCe
Confidence 8888888888888888888888888888888888888888888888888888888888888888888888864 578
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 005178 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477 (710)
Q Consensus 398 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 477 (710)
.+|+++|.+|++.|++++|.++|++|.+.+. .||..||+.++.+|++.|++++|.++++.|.+.|+.|+..+|++||.+
T Consensus 355 ~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~-~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~ 433 (857)
T PLN03077 355 VSWTAMISGYEKNGLPDKALETYALMEQDNV-SPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEM 433 (857)
T ss_pred eeHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-CCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 8888888888888888888888888888885 788888888888888888888888888888888888888888888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-hCCcHHHHHHHHH------------
Q 005178 478 LGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ-ANPKLVAFLNLIE------------ 544 (710)
Q Consensus 478 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~L~------------ 544 (710)
|++.|++++|.++|++|.+ +|..+|+.++.+|.+.|+.++|.++|++|.+ ..|+..++..+|.
T Consensus 434 y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~ 509 (857)
T PLN03077 434 YSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGK 509 (857)
T ss_pred HHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhH
Confidence 8888888888888888743 5667888888888888888888888888753 4677666555443
Q ss_pred ----------------------hhcCCcccHHHHHHHHHHhccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 005178 545 ----------------------DNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLY 602 (710)
Q Consensus 545 ----------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 602 (710)
..+.+.| ..++|...++.+ .+|..+||+|+.+|+++|+.++|.++|++|.+.|+.
T Consensus 510 ~i~~~~~~~g~~~~~~~~naLi~~y~k~G-~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~ 586 (857)
T PLN03077 510 EIHAHVLRTGIGFDGFLPNALLDLYVRCG-RMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVN 586 (857)
T ss_pred HHHHHHHHhCCCccceechHHHHHHHHcC-CHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 2233334 567777777777 788889999999999999999999999999999988
Q ss_pred CcccccccccchhcccccC-hHHHHHHHHHHHHHH
Q 005178 603 PGLHNKTLDEWSLDVRSLS-VGAAQTALEEWMWTL 636 (710)
Q Consensus 603 ~~~~~~~~~~w~~~~~~~~-~G~~~~Al~~~~~~~ 636 (710)
||.. +|..++..++ .|..++|.+.|.+..
T Consensus 587 Pd~~-----T~~~ll~a~~~~g~v~ea~~~f~~M~ 616 (857)
T PLN03077 587 PDEV-----TFISLLCACSRSGMVTQGLEYFHSME 616 (857)
T ss_pred CCcc-----cHHHHHHHHhhcChHHHHHHHHHHHH
Confidence 8744 4556677775 488999988886643
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=1e-26 Score=274.96 Aligned_cols=455 Identities=13% Similarity=0.057 Sum_probs=338.2
Q ss_pred HHhccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 005178 161 LNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDE 240 (710)
Q Consensus 161 l~~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 240 (710)
+...++++.|+.+++.+... .+.+..+|+.+..+|...|++++|...|+++.+.. +.+...+..+...+...|++++
T Consensus 441 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~ 517 (899)
T TIGR02917 441 YLRSGQFDKALAAAKKLEKK--QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDD 517 (899)
T ss_pred HHhcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHH
Confidence 33445677777777777654 35566777888888888888888888888877653 2245566667777778888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005178 241 AIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320 (710)
Q Consensus 241 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 320 (710)
|.+.|+++.+.+.. +..++..+...+.+.|+.++|..+|+++...+ +.+...+..++..|.+.|++++|..+++++.+
T Consensus 518 A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 595 (899)
T TIGR02917 518 AIQRFEKVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAAD 595 (899)
T ss_pred HHHHHHHHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88888888776433 67777888888888888888888888887654 44566777788888888888888888888876
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 005178 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400 (710)
Q Consensus 321 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 400 (710)
.. +.+..+|..+..++...|++++|...|+++.+.. +.+...+..+..+|.+.|++++|..+|+++.+... .+..++
T Consensus 596 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~ 672 (899)
T TIGR02917 596 AA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKP-DNTEAQ 672 (899)
T ss_pred cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHH
Confidence 43 4466778888888888888888888888887653 34566777788888888888888888888877533 357778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Q 005178 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK 480 (710)
Q Consensus 401 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 480 (710)
..++..+...|++++|.++++.+.+.. +.+...+..+...|...|++++|...|+++.+.+ |+..++..++.++.+
T Consensus 673 ~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~ 748 (899)
T TIGR02917 673 IGLAQLLLAAKRTESAKKIAKSLQKQH--PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLA 748 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC--cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHH
Confidence 888888888888888888888888766 5677778888888888888888888888888754 444677778888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHH
Q 005178 481 ARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNV 560 (710)
Q Consensus 481 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~ 560 (710)
.|++++|.+.++++.+... .+...+..+...|...|++++|.+.|+++.+..|++..++..++..+...++ .+|..+
T Consensus 749 ~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~--~~A~~~ 825 (899)
T TIGR02917 749 SGNTAEAVKTLEAWLKTHP-NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD--PRALEY 825 (899)
T ss_pred CCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc--HHHHHH
Confidence 8888888888888876532 3566777888888888888888888888888888888887777777666664 456666
Q ss_pred HHh-ccCCCChh-hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcccccccccchhccccc-ChHHHHHHHHHHHHHH
Q 005178 561 IKD-TEVDARRP-FCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSL-SVGAAQTALEEWMWTL 636 (710)
Q Consensus 561 ~~~-~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~-~~G~~~~Al~~~~~~~ 636 (710)
+++ +...|+.+ ++..++.++...|++++|.++|+++++.+.. +...+..+...+ ..|..++|...+.+.+
T Consensus 826 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 826 AEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE------AAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 655 34455443 6778888888888888888888888765521 223333333333 4588888888876643
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=2.7e-25 Score=262.80 Aligned_cols=458 Identities=9% Similarity=-0.000 Sum_probs=244.8
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCC---------------------
Q 005178 160 ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEI--------------------- 218 (710)
Q Consensus 160 ~l~~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--------------------- 218 (710)
++...+++++|..+|+++.+.. +.+...+..+...+...|++++|.+.|+.+.+...
T Consensus 372 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 449 (899)
T TIGR02917 372 AYLALGDFEKAAEYLAKATELD--PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDK 449 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHH
Confidence 4445556677777776665542 33445555555566666666666666665554421
Q ss_pred ------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005178 219 ------------ELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286 (710)
Q Consensus 219 ------------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 286 (710)
+.+..+|..+..++...|++++|.+.|+++.+... .+...+..+...+...|++++|.+.|+++...
T Consensus 450 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 528 (899)
T TIGR02917 450 ALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAAANLARIDIQEGNPDDAIQRFEKVLTI 528 (899)
T ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 22334444444444455555555555554444321 13334444444555555555555555555443
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 005178 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366 (710)
Q Consensus 287 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 366 (710)
+ +.+..++..+...+.+.|++++|..+++++.+.+ +.+...+..++..+.+.|++++|..+++.+.+.. +.+...|.
T Consensus 529 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 605 (899)
T TIGR02917 529 D-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWL 605 (899)
T ss_pred C-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHH
Confidence 2 2334445555555555555555555555554432 2233444555555555555555555555555432 33445555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhC
Q 005178 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446 (710)
Q Consensus 367 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 446 (710)
.+..+|.+.|++++|+..|+.+.+... .+...+..+..+|...|++++|..+|+++.+.. +.+..++..++..+...
T Consensus 606 ~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~ 682 (899)
T TIGR02917 606 MLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELK--PDNTEAQIGLAQLLLAA 682 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHc
Confidence 555666666666666666665554422 244455555556666666666666666655543 34455566666666666
Q ss_pred CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 005178 447 GNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526 (710)
Q Consensus 447 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 526 (710)
|++++|..+++.+.+.+. .+...+..+...+.+.|++++|+..|+++...+ |+..++..+..++.+.|++++|.+.+
T Consensus 683 ~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~ 759 (899)
T TIGR02917 683 KRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTL 759 (899)
T ss_pred CCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHH
Confidence 666666666666655432 244555556666666666666666666665532 33345555666666666666666666
Q ss_pred HHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHHHHhc-cCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCc
Q 005178 527 TCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDT-EVDAR-RPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPG 604 (710)
Q Consensus 527 ~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 604 (710)
+.+.+..|++..+...++..+...| ..++|...++++ ...|+ ..+++.++.++.+.|+ ++|+..++++.... |+
T Consensus 760 ~~~l~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~--~~ 835 (899)
T TIGR02917 760 EAWLKTHPNDAVLRTALAELYLAQK-DYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA--PN 835 (899)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC--CC
Confidence 6666666666666666655555444 344444444442 33333 3356666666666666 55666666655321 22
Q ss_pred ccccccccchhccccc-ChHHHHHHHHHHHHHHH
Q 005178 605 LHNKTLDEWSLDVRSL-SVGAAQTALEEWMWTLA 637 (710)
Q Consensus 605 ~~~~~~~~w~~~~~~~-~~G~~~~Al~~~~~~~~ 637 (710)
+...|......+ ..|..++|+..+.+.++
T Consensus 836 ----~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 865 (899)
T TIGR02917 836 ----IPAILDTLGWLLVEKGEADRALPLLRKAVN 865 (899)
T ss_pred ----CcHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 223333332222 34777777776655443
No 9
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=1.9e-21 Score=195.35 Aligned_cols=432 Identities=18% Similarity=0.120 Sum_probs=348.4
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005178 164 LKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243 (710)
Q Consensus 164 l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 243 (710)
..+.+.....-....+. .+.-..+|..+.+++...|++++|+.+++.+++...+ ....|..+..++...|+.+.|.+
T Consensus 95 ~~r~d~s~a~~~~a~r~--~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~ 171 (966)
T KOG4626|consen 95 GSRLDKSSAGSLLAIRK--NPQGAEAYSNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQ 171 (966)
T ss_pred ccchhhhhhhhhhhhhc--cchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHH
Confidence 33444444433333333 2445688999999999999999999999999987322 46789999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005178 244 WFERMYKTGLMPDEVTY-SAILDVYAKSGKVEEVLSLYERGVASGWKPD-PIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321 (710)
Q Consensus 244 ~~~~m~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 321 (710)
.|.+.++. .|+.... ..+...+-..|+.++|...|.+.++. .|. .+.|+.|...+-.+|+...|++.|++..+.
T Consensus 172 ~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl 247 (966)
T KOG4626|consen 172 CFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL 247 (966)
T ss_pred HHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC
Confidence 99999886 4555443 34445555689999999999998875 344 678999999999999999999999999985
Q ss_pred CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 005178 322 GVQPN-LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD-EKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399 (710)
Q Consensus 322 g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 399 (710)
.|+ ...|-.|...|...+.+++|...|.+.... .|+ .+.+..+...|...|.++.|+..|++.++.... =...
T Consensus 248 --dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~A 322 (966)
T KOG4626|consen 248 --DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDA 322 (966)
T ss_pred --CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHH
Confidence 454 358889999999999999999999998875 444 677888888999999999999999999986332 3578
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHH
Q 005178 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN-VMGCTCLIQCL 478 (710)
Q Consensus 400 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~ 478 (710)
|+.|..++-..|++.+|++.|.+..... +....+.+.|...|...|.+++|..+|....+ +.|. ...++.|...|
T Consensus 323 y~NlanALkd~G~V~ea~~cYnkaL~l~--p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~ 398 (966)
T KOG4626|consen 323 YNNLANALKDKGSVTEAVDCYNKALRLC--PNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIY 398 (966)
T ss_pred HhHHHHHHHhccchHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHH
Confidence 9999999999999999999999998875 56788999999999999999999999999988 4455 45789999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHH
Q 005178 479 GKARRIDDLVRVFGVSIDRGVKPDDR-LCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEF 557 (710)
Q Consensus 479 ~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a 557 (710)
-+.|++++|+..+++.+. |+|+.. .|+.+...|...|+.+.|.+.+.++..++|....+.+.|+..+.+.|+..+++
T Consensus 399 kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI 476 (966)
T KOG4626|consen 399 KQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAI 476 (966)
T ss_pred HhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHH
Confidence 999999999999999887 778754 89999999999999999999999999999999999999999999999888888
Q ss_pred HHHHHhccCCCChh-hHHHHHHHHHhCC---CHH----HHHHHHHHHHHcCCCCcccccccccc
Q 005178 558 RNVIKDTEVDARRP-FCNCLIDICRNRN---LNE----RAHELLYLGTLYGLYPGLHNKTLDEW 613 (710)
Q Consensus 558 ~~~~~~~~~~~~~~-~~~~l~~~~~~~g---~~~----~A~~~~~~~~~~~~~~~~~~~~~~~w 613 (710)
..+-..+..+||.+ .|..++..+--.. +++ +-..+...-+....+|.+.++-...|
T Consensus 477 ~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~kl~sivrdql~~~rlpsvhP~hsm~y 540 (966)
T KOG4626|consen 477 QSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKKLVSIVRDQLEKNRLPSVHPHHSMLY 540 (966)
T ss_pred HHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHHHHHHHHHHHhhhcCCccCccccccc
Confidence 88888899999876 4544444322211 222 22233333345556677766443333
No 10
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=1.4e-21 Score=196.17 Aligned_cols=422 Identities=13% Similarity=0.136 Sum_probs=346.6
Q ss_pred cCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005178 165 KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEW 244 (710)
Q Consensus 165 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 244 (710)
+++.+|.+.....-.+.+. +....-.+-.++....+++....--....+.. ..-..+|..+.+.+...|++++|+.+
T Consensus 62 gd~~~a~~h~nmv~~~d~t--~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg~~~~al~~ 138 (966)
T KOG4626|consen 62 GDYKQAEKHCNMVGQEDPT--NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERGQLQDALAL 138 (966)
T ss_pred cCHHHHHHHHhHhhccCCC--cccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhchHHHHHHH
Confidence 4688888887766554422 22223334456677777777665544444432 33568999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 005178 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAF-SVLGKMFGESGDYDGIRYVLQEMKSLGV 323 (710)
Q Consensus 245 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~ 323 (710)
|+.+++.... .+..|..+..++...|+.+.|.+.|.+.+.. .|+.... +.+...+...|++++|...|.+.++.
T Consensus 139 y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~-- 213 (966)
T KOG4626|consen 139 YRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIET-- 213 (966)
T ss_pred HHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHhh--
Confidence 9999987543 6889999999999999999999999999885 4665544 34555666789999999999998875
Q ss_pred CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 005178 324 QPN-LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD-EKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYN 401 (710)
Q Consensus 324 ~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 401 (710)
.|. .+.|+.|.-.+...|+...|+..|++.... .|+ ...|-.|...|...+.++.|...|.+....... ..+.+.
T Consensus 214 qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn-~A~a~g 290 (966)
T KOG4626|consen 214 QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN-HAVAHG 290 (966)
T ss_pred CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc-chhhcc
Confidence 343 357999999999999999999999999876 455 567888999999999999999999988765322 567888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc
Q 005178 402 TLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481 (710)
Q Consensus 402 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 481 (710)
.|...|...|.++.|++.|++..+.. +.-...|+.|..++-..|++.+|.+.|.+.+..... -....+.|...|...
T Consensus 291 Nla~iYyeqG~ldlAI~~Ykral~~~--P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~ 367 (966)
T KOG4626|consen 291 NLACIYYEQGLLDLAIDTYKRALELQ--PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQ 367 (966)
T ss_pred ceEEEEeccccHHHHHHHHHHHHhcC--CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHh
Confidence 88889999999999999999999876 455789999999999999999999999999885322 467888899999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHH
Q 005178 482 RRIDDLVRVFGVSIDRGVKPDD-RLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNV 560 (710)
Q Consensus 482 g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~ 560 (710)
|++++|..+|....+ +.|.- ..++.|...|-++|++++|+..|+++.+++|.....+..+|..+...|+...++..+
T Consensus 368 ~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y 445 (966)
T KOG4626|consen 368 GKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCY 445 (966)
T ss_pred ccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHH
Confidence 999999999999887 55554 478899999999999999999999999999999999999999888888666666667
Q ss_pred HHhccCCCChh-hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCc
Q 005178 561 IKDTEVDARRP-FCNCLIDICRNRNLNERAHELLYLGTLYGLYPG 604 (710)
Q Consensus 561 ~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 604 (710)
.+.+.+.|... ..+.|..+|...|++.+|+.-++.++.. .|+
T Consensus 446 ~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kPD 488 (966)
T KOG4626|consen 446 TRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KPD 488 (966)
T ss_pred HHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCC
Confidence 77788888654 7899999999999999999999987643 455
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.92 E-value=2.1e-19 Score=213.76 Aligned_cols=458 Identities=10% Similarity=0.000 Sum_probs=284.2
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCC------------------C------
Q 005178 164 LKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEI------------------E------ 219 (710)
Q Consensus 164 l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~------------------~------ 219 (710)
.+++++|+..++.+.+.. +.+...+..+..++...|++++|+..|+++..... .
T Consensus 160 ~g~~~~A~~~L~~ll~~~--P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~ 237 (1157)
T PRK11447 160 PAQRPEAINQLQRLNADY--PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAA 237 (1157)
T ss_pred CccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHH
Confidence 357889999999988774 55677788888999999999999999988765321 0
Q ss_pred --------CCHHHH----H-----------------HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 005178 220 --------LDNITY----S-----------------TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270 (710)
Q Consensus 220 --------p~~~~~----~-----------------~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 270 (710)
|+...+ . .....+...|++++|+..|++.++.... +...+..+..+|.+.
T Consensus 238 l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~ 316 (1157)
T PRK11447 238 LQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQ 316 (1157)
T ss_pred HHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 000000 0 1122456678888888888888876432 677888888888888
Q ss_pred CCHHHHHHHHHHHHhCCCCC-CHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005178 271 GKVEEVLSLYERGVASGWKP-DPIAFS------------VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337 (710)
Q Consensus 271 g~~~~A~~~~~~~~~~g~~~-~~~~~~------------~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 337 (710)
|++++|+..|++.++..-.. ....|. .+...+.+.|++++|+..|+++.+.. +.+...+..+...+
T Consensus 317 g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~ 395 (1157)
T PRK11447 317 GDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVA 395 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 89999988888887753111 111121 22445678888888888888888763 23556777788888
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--------CCHHHHHHHHHHHHH
Q 005178 338 GKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWP--------MDFILYNTLLNMCAD 409 (710)
Q Consensus 338 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--------~~~~~~~~li~~~~~ 409 (710)
...|++++|++.|+++.+.. +.+...+..+...|. .++.++|+.+++.+...... .....+..+...+..
T Consensus 396 ~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~ 473 (1157)
T PRK11447 396 MARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALEN 473 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 88888888888888888653 223444444444432 22344444443332111000 001122233344444
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHH------------------
Q 005178 410 IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC------------------ 471 (710)
Q Consensus 410 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~------------------ 471 (710)
.|++++|++.|++..+.. +.+...+..+...|.+.|++++|...++++.+.... +...+
T Consensus 474 ~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~ 550 (1157)
T PRK11447 474 QGKWAQAAELQRQRLALD--PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALA 550 (1157)
T ss_pred CCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHH
Confidence 555555555555554443 334444445555555555555555555554442211 12111
Q ss_pred --------------------------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 005178 472 --------------------------TCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKV 525 (710)
Q Consensus 472 --------------------------~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 525 (710)
..+...+...|+.++|+.+++. ...+...+..+...+.+.|++++|+..
T Consensus 551 ~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~ 625 (1157)
T PRK11447 551 HLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAA 625 (1157)
T ss_pred HHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHH
Confidence 2234455666666666666651 223445667788889999999999999
Q ss_pred HHHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHHHHhc-cCCCChh-hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Q 005178 526 ITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDT-EVDARRP-FCNCLIDICRNRNLNERAHELLYLGTLYGLYP 603 (710)
Q Consensus 526 ~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~~~-~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 603 (710)
|+++.+.+|++..+...++..+...| ..++|.+.++.. ...|+.. ++..+..++...|++++|.+++++++......
T Consensus 626 y~~al~~~P~~~~a~~~la~~~~~~g-~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~ 704 (1157)
T PRK11447 626 YQRVLTREPGNADARLGLIEVDIAQG-DLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQ 704 (1157)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccC
Confidence 99999999999888888888777666 566777777654 4455443 67778889999999999999999887543111
Q ss_pred cccccccccchhccccc-ChHHHHHHHHHHHHHH
Q 005178 604 GLHNKTLDEWSLDVRSL-SVGAAQTALEEWMWTL 636 (710)
Q Consensus 604 ~~~~~~~~~w~~~~~~~-~~G~~~~Al~~~~~~~ 636 (710)
.-...+...+....+.+ ..|+.++|+..|...+
T Consensus 705 ~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 705 PPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 00000111111112222 4588888888887765
No 12
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.90 E-value=9.1e-19 Score=208.32 Aligned_cols=372 Identities=12% Similarity=0.032 Sum_probs=246.2
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCcHHHH----------------HHHHHHHHccCChHHHHHHHHHHHHCCCCCCH
Q 005178 159 LILNSLKFWQKSYFFFNWIKSQNLFPMETIFY----------------NVTMKSLRFGRQFQLIEQLANEMVSNEIELDN 222 (710)
Q Consensus 159 ~~l~~l~~~~~A~~~~~~~~~~~~~~~~~~~~----------------~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 222 (710)
.++...++.++|.+.++++.+.. +.+...+ ..+...+.+.|++++|++.|+.+.... +|+.
T Consensus 70 ~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~ 146 (1157)
T PRK11447 70 RLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPEL 146 (1157)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCCh
Confidence 34455667999999999998875 3333322 223446788999999999999998763 2332
Q ss_pred H-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-------------
Q 005178 223 I-TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW------------- 288 (710)
Q Consensus 223 ~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~------------- 288 (710)
. ....+.......|+.++|++.|+++.+.... +...+..+...+...|+.++|+..++++....-
T Consensus 147 ~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l 225 (1157)
T PRK11447 147 DLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQI 225 (1157)
T ss_pred HHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHH
Confidence 2 1111222233468999999999999987533 677888899999999999999999999865320
Q ss_pred ---CCC---HHHHH----------------------------------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 005178 289 ---KPD---PIAFS----------------------------------VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328 (710)
Q Consensus 289 ---~~~---~~~~~----------------------------------~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 328 (710)
.++ ...+. .+...+...|++++|+..|++..+.. +-+..
T Consensus 226 ~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~ 304 (1157)
T PRK11447 226 KDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSE 304 (1157)
T ss_pred hccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence 000 00010 11234556788888888888877753 23666
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHH------------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 005178 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTP-DEKTL------------TALIKIYGKARWAKDALELWERMRENKWPM 395 (710)
Q Consensus 329 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~------------~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 395 (710)
++..|..++.+.|++++|+..|++..+..-.. ....| ......+.+.|++++|+..|+++.+... .
T Consensus 305 a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~ 383 (1157)
T PRK11447 305 ALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-T 383 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-C
Confidence 77778888888888888888888877653111 11111 1223456677888888888888877643 2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC--------cC
Q 005178 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA--------IN 467 (710)
Q Consensus 396 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--------p~ 467 (710)
+...+..+..++...|++++|++.|+++.+.. +.+...+..+...|. .++.++|..+++.+...... ..
T Consensus 384 ~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~ 460 (1157)
T PRK11447 384 DSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQ 460 (1157)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence 56667777788888888888888888887765 455666666666664 34566666666554321100 01
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHH
Q 005178 468 VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFL 540 (710)
Q Consensus 468 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 540 (710)
...+..+...+...|++++|+..|++.++.... +...+..+..+|.+.|++++|...++++.+..|++....
T Consensus 461 ~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~ 532 (1157)
T PRK11447 461 NDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQV 532 (1157)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 123445566677788888888888888774322 344666777888888888888888888888777765543
No 13
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=1e-20 Score=200.56 Aligned_cols=311 Identities=15% Similarity=0.097 Sum_probs=227.0
Q ss_pred HHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHc
Q 005178 194 MKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPD---EVTYSAILDVYAKS 270 (710)
Q Consensus 194 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~ 270 (710)
...+...|++++|+..|+++.+.+. .+..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 4455677888889998888887632 2455777788888888888888888888877532221 24677788888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHH
Q 005178 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL----VVYNTLLEAMGKAGKPGLA 346 (710)
Q Consensus 271 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A 346 (710)
|++++|+.+|+++.+.. +.+..+++.++..|.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 88888888888887652 456778888888888888888888888888775432221 2345667777788888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005178 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426 (710)
Q Consensus 347 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 426 (710)
...|+++.+.. +.+...+..+...|.+.|++++|.++|+++.+.+......+++.++.+|...|++++|...++++.+.
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888887653 33455667777888888888888888888876543323456777788888888888888888887765
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCH
Q 005178 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK---ARRIDDLVRVFGVSIDRGVKPDD 503 (710)
Q Consensus 427 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~ 503 (710)
. |+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.++++.+|++|.+.++.|++
T Consensus 279 ~---p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 279 Y---PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred C---CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 3 45556677788888888888888888887764 5777777777776664 45788888888888876666665
Q ss_pred HHHHHHHHHHHhcCC
Q 005178 504 RLCGCLLSVVSLCET 518 (710)
Q Consensus 504 ~~~~~ll~~~~~~g~ 518 (710)
. .+|.+||.
T Consensus 354 ~------~~c~~cg~ 362 (389)
T PRK11788 354 R------YRCRNCGF 362 (389)
T ss_pred C------EECCCCCC
Confidence 5 23555554
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.88 E-value=6.2e-18 Score=188.90 Aligned_cols=253 Identities=13% Similarity=0.006 Sum_probs=204.5
Q ss_pred cCCHHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005178 340 AGKPGLARSLFDEMVESG-LTP-DEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417 (710)
Q Consensus 340 ~g~~~~A~~~~~~m~~~g-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 417 (710)
.+++++|.+.|++..+.+ ..| ....+..+...+...|++++|+..|++..+.... +...|..+...+...|++++|+
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHH
Confidence 468999999999999764 223 4567888888899999999999999999886432 4668888899999999999999
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005178 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDR 497 (710)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 497 (710)
..|+++.+.. +.+...|..+...|...|++++|...|++.++.... +...+..+..++.+.|++++|+..|++.++.
T Consensus 386 ~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 462 (615)
T TIGR00990 386 EDFDKALKLN--SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATFRRCKKN 462 (615)
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999998876 577889999999999999999999999999986432 5777888999999999999999999999874
Q ss_pred CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHH----HHHH---HhhcCCcccHHHHHHHHHHh-ccCCC
Q 005178 498 GVKP-DDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAF----LNLI---EDNSTGFENIKEEFRNVIKD-TEVDA 568 (710)
Q Consensus 498 ~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~----~~~L---~~~~~~~~~~~~~a~~~~~~-~~~~~ 568 (710)
.| +...++.+..++...|++++|++.|+++.++.|+.... ..++ ...+...+ ..++|..++++ +...|
T Consensus 463 --~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~-~~~eA~~~~~kAl~l~p 539 (615)
T TIGR00990 463 --FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ-DFIEAENLCEKALIIDP 539 (615)
T ss_pred --CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHhcCC
Confidence 34 46688899999999999999999999999998864321 1111 11111113 56677777765 56667
Q ss_pred Chh-hHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 005178 569 RRP-FCNCLIDICRNRNLNERAHELLYLGTLY 599 (710)
Q Consensus 569 ~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 599 (710)
+.. .+..++.++...|++++|++.|+++.+.
T Consensus 540 ~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 540 ECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 655 6889999999999999999999987643
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=3.6e-19 Score=188.73 Aligned_cols=264 Identities=18% Similarity=0.184 Sum_probs=139.9
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHH
Q 005178 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN---LVVYNTLLEAMGKAGKPGL 345 (710)
Q Consensus 269 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~ 345 (710)
..|++++|+..|.++.+.+ +.+..++..+...|...|++++|..+++.+...+..++ ...+..++..|.+.|++++
T Consensus 47 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~ 125 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDR 125 (389)
T ss_pred hcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 3444444444444444432 12233444444444445555555555444444221111 1234444555555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHH
Q 005178 346 ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMD----FILYNTLLNMCADIGLVEEAERLFE 421 (710)
Q Consensus 346 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~ 421 (710)
|..+|+++.+.. +.+..++..++..|.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|...|+
T Consensus 126 A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 204 (389)
T PRK11788 126 AEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLK 204 (389)
T ss_pred HHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 555555554431 23344455555555555555555555555554332221 1123445555566666666666666
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 005178 422 DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501 (710)
Q Consensus 422 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 501 (710)
++.+.. +.+...+..+...|.+.|++++|..+|+++.+.+......+++.++.+|.+.|++++|...++++.+. .|
T Consensus 205 ~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p 280 (389)
T PRK11788 205 KALAAD--PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YP 280 (389)
T ss_pred HHHhHC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 666543 34455666666666666666666666666665432222345666666677777777777777766653 34
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHH
Q 005178 502 DDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVA 538 (710)
Q Consensus 502 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 538 (710)
+...+..++..+.+.|++++|..+++.+.+..|+...
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~ 317 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRG 317 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHH
Confidence 4455566666666677777777666666655555443
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=3.8e-17 Score=182.56 Aligned_cols=393 Identities=9% Similarity=-0.009 Sum_probs=255.0
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 005178 160 ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFD 239 (710)
Q Consensus 160 ~l~~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 239 (710)
.+...++++.|+..|+.+... .|+...|..+..+|.+.|++++|+..++..++.. +.+...|..+..+|...|+++
T Consensus 136 ~~~~~~~~~~Ai~~y~~al~~---~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~ 211 (615)
T TIGR00990 136 KAYRNKDFNKAIKLYSKAIEC---KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYA 211 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHH
Confidence 355567899999999998764 4677889999999999999999999999998863 225568888888999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---------------------------CCCCC-
Q 005178 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS---------------------------GWKPD- 291 (710)
Q Consensus 240 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------------------------g~~~~- 291 (710)
+|+..|..+...+...+.. ...++.-+........+...++.-... ...+.
T Consensus 212 eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (615)
T TIGR00990 212 DALLDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEET 290 (615)
T ss_pred HHHHHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccccc
Confidence 9998887665442111111 111111111100011111111100000 00000
Q ss_pred HHHHHHHHHH---HHhcCCHHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 005178 292 PIAFSVLGKM---FGESGDYDGIRYVLQEMKSLG-VQP-NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366 (710)
Q Consensus 292 ~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 366 (710)
...+..+... ....+++++|.+.|++..+.+ ..| +...|+.+...+...|++++|+..|++.++.. +.+...|.
T Consensus 291 ~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~ 369 (615)
T TIGR00990 291 GNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYI 369 (615)
T ss_pred ccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHH
Confidence 0000001000 012357788888888887654 222 34567777777778888888888888877652 22355677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhC
Q 005178 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446 (710)
Q Consensus 367 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 446 (710)
.+...+...|++++|+..|++..+.... +..+|..+...+...|++++|...|++..+.. +.+...+..+..++.+.
T Consensus 370 ~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~--P~~~~~~~~la~~~~~~ 446 (615)
T TIGR00990 370 KRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD--PDFIFSHIQLGVTQYKE 446 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--ccCHHHHHHHHHHHHHC
Confidence 7777788888888888888887776432 56777777888888888888888888887765 55677777788888888
Q ss_pred CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-----H-HHHHHHHHHHhcCChH
Q 005178 447 GNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD-----R-LCGCLLSVVSLCETSE 520 (710)
Q Consensus 447 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-----~-~~~~ll~~~~~~g~~~ 520 (710)
|++++|+..|++.++... .+...|+.+...+...|++++|++.|++.+......+. . .++..+..+...|+++
T Consensus 447 g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~ 525 (615)
T TIGR00990 447 GSIASSMATFRRCKKNFP-EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFI 525 (615)
T ss_pred CCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHH
Confidence 888888888888776432 24667777888888888888888888887764321111 1 1222223344467888
Q ss_pred HHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHHHHh
Q 005178 521 DVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKD 563 (710)
Q Consensus 521 ~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~~ 563 (710)
+|.++++++.+++|+...+...|+..+...| ..++|..++++
T Consensus 526 eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g-~~~eAi~~~e~ 567 (615)
T TIGR00990 526 EAENLCEKALIIDPECDIAVATMAQLLLQQG-DVDEALKLFER 567 (615)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcc-CHHHHHHHHHH
Confidence 8888888888888887777777777766666 45566565554
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.86 E-value=6.1e-18 Score=188.21 Aligned_cols=331 Identities=9% Similarity=-0.042 Sum_probs=154.8
Q ss_pred HHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 005178 194 MKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKV 273 (710)
Q Consensus 194 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 273 (710)
+..+.+.|++++|..+++..+..... +...+..++.++...|++++|++.|+++.+.... +...+..+...+.+.|++
T Consensus 49 ~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~~ 126 (656)
T PRK15174 49 AIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLKSKQY 126 (656)
T ss_pred HHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCH
Confidence 33444555555555555555444221 2223333333444455555555555555544221 344445555555555555
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005178 274 EEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353 (710)
Q Consensus 274 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 353 (710)
++|+..|+++.... +.+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|...++.+
T Consensus 127 ~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~ 203 (656)
T PRK15174 127 ATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARAL 203 (656)
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHH
Confidence 55555555555431 223444455555555555555555555544433211 11222222 2244455555555555554
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHhCCCC
Q 005178 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEE----AERLFEDMKLSDYC 429 (710)
Q Consensus 354 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~~~~~ 429 (710)
.+....++...+..+..++.+.|++++|+..|++..+.... +...+..+...|...|++++ |...|++..+..
T Consensus 204 l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-- 280 (656)
T PRK15174 204 LPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-- 280 (656)
T ss_pred HhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC--
Confidence 44321122223333344455555555555555555544322 34444455555555555543 455555555443
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHH
Q 005178 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR-LCGC 508 (710)
Q Consensus 430 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ 508 (710)
+.+...+..+...+...|++++|...++++.+.... +...+..+..+|.+.|++++|+..|+++... .|+.. .+..
T Consensus 281 P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~ 357 (656)
T PRK15174 281 SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRY 357 (656)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHH
Confidence 344455555555555555555555555555543221 2334444555555555555555555555442 22222 2222
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCc
Q 005178 509 LLSVVSLCETSEDVGKVITCLQQANPK 535 (710)
Q Consensus 509 ll~~~~~~g~~~~a~~~~~~~~~~~p~ 535 (710)
+..++...|+.++|...|+++.+..|+
T Consensus 358 ~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 358 AAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 334455555555555555555555444
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.85 E-value=8.7e-17 Score=179.03 Aligned_cols=329 Identities=10% Similarity=0.004 Sum_probs=265.9
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 005178 157 ALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCN 236 (710)
Q Consensus 157 ~~~~l~~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g 236 (710)
+..-+..-+++..|+.+++.+.... +.+...+..++..+...|++++|+..|+++..... .+...+..+...+...|
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P-~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV-CQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcC
Confidence 3333444567899999998888764 44555666777777889999999999999998632 24567778888999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005178 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQ 316 (710)
Q Consensus 237 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 316 (710)
++++|++.|+++.+... .+...+..+..++...|++++|...++.+.... +.+...+..+ ..+...|++++|..+++
T Consensus 125 ~~~~Ai~~l~~Al~l~P-~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~ 201 (656)
T PRK15174 125 QYATVADLAEQAWLAFS-GNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLAR 201 (656)
T ss_pred CHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHH
Confidence 99999999999998642 267788899999999999999999999887653 2333444333 34788999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhCC
Q 005178 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD----ALELWERMRENK 392 (710)
Q Consensus 317 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~~ 392 (710)
.+.+....++...+..+..++.+.|++++|...|+++.+.. +.+...+..+...|...|++++ |...|++..+..
T Consensus 202 ~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~ 280 (656)
T PRK15174 202 ALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN 280 (656)
T ss_pred HHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC
Confidence 98876433445555666788899999999999999999864 4467788889999999999986 899999998864
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCH-HHH
Q 005178 393 WPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINV-MGC 471 (710)
Q Consensus 393 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~ 471 (710)
.. +...+..+...+...|++++|...+++..+.. +.+...+..+..+|.+.|++++|...|+++.+.+ |+. ..+
T Consensus 281 P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~--P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~ 355 (656)
T PRK15174 281 SD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH--PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWN 355 (656)
T ss_pred CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHH
Confidence 43 67889999999999999999999999999876 5677888889999999999999999999998854 443 344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005178 472 TCLIQCLGKARRIDDLVRVFGVSIDR 497 (710)
Q Consensus 472 ~~li~~~~~~g~~~~A~~~~~~m~~~ 497 (710)
..+..++...|+.++|+..|+++.+.
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 44677889999999999999999874
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=1.9e-16 Score=180.15 Aligned_cols=418 Identities=10% Similarity=0.016 Sum_probs=298.9
Q ss_pred CCCHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005178 151 QPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIIT 230 (710)
Q Consensus 151 ~~~~~~~~~~l~~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~ 230 (710)
++...+.+.+....++.++|+.++..+... -+.+...+..+...+...|++++|..+|++.++.. +.+...+..+..
T Consensus 15 ~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~--~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~ 91 (765)
T PRK10049 15 NNQIADWLQIALWAGQDAEVITVYNRYRVH--MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLIL 91 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 334567777888888899999999888763 24566678899999999999999999999988762 234566777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 005178 231 CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDG 310 (710)
Q Consensus 231 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 310 (710)
++...|++++|+..++++.+.... +.. +..+..++...|+.++|+..++++.+.. +.+...+..+..++...|..++
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHH
Confidence 889999999999999999887432 555 8888889999999999999999999864 3456666778888888999999
Q ss_pred HHHHHHHHHHCCCCCCH------HHHHHHHHHHH-----HcCCH---HHHHHHHHHHHHC-CCCCCHH-HHH----HHHH
Q 005178 311 IRYVLQEMKSLGVQPNL------VVYNTLLEAMG-----KAGKP---GLARSLFDEMVES-GLTPDEK-TLT----ALIK 370 (710)
Q Consensus 311 A~~~~~~m~~~g~~p~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-g~~p~~~-~~~----~li~ 370 (710)
|+..++.... .|+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+. ..+.
T Consensus 169 Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~ 245 (765)
T PRK10049 169 ALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG 245 (765)
T ss_pred HHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH
Confidence 9998886654 2221 01112222221 22334 7788888888754 2223221 111 1133
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--CHHHHHHHHHHHHhCC
Q 005178 371 IYGKARWAKDALELWERMRENKWP-MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP--DNYSYTAMLNIYGSGG 447 (710)
Q Consensus 371 ~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g 447 (710)
++...|++++|+..|+.+.+.+.. |+. ....+..+|...|++++|+.+|+++.+.....+ ....+..+..++...|
T Consensus 246 ~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g 324 (765)
T PRK10049 246 ALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESE 324 (765)
T ss_pred HHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcc
Confidence 455778999999999999887543 332 222357788999999999999999876542110 1345667777889999
Q ss_pred CHHHHHHHHHHHHHcCC-----------CcC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005178 448 NVDNAIELFEEMSELGV-----------AIN---VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVV 513 (710)
Q Consensus 448 ~~~~A~~~~~~m~~~~~-----------~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 513 (710)
++++|..+++.+.+... .|+ ...+..+...+...|+.++|+.+++++...... +...+..+..++
T Consensus 325 ~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-n~~l~~~lA~l~ 403 (765)
T PRK10049 325 NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-NQGLRIDYASVL 403 (765)
T ss_pred cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 99999999999887431 123 235566778888999999999999998865322 456788888899
Q ss_pred HhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHHHHhc-cCCCChhhHHHHHHHH
Q 005178 514 SLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDT-EVDARRPFCNCLIDIC 580 (710)
Q Consensus 514 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~l~~~~ 580 (710)
...|++++|++.++++...+|++..+...++......+ ..++|...++.+ ...|+.+....|-..+
T Consensus 404 ~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~-~~~~A~~~~~~ll~~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 404 QARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQ-EWRQMDVLTDDVVAREPQDPGVQRLARAR 470 (765)
T ss_pred HhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999999999998776666665544445 567777777663 5566665443443333
No 20
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.84 E-value=9.9e-16 Score=174.33 Aligned_cols=467 Identities=10% Similarity=0.008 Sum_probs=304.6
Q ss_pred CCCcchhhHHHHHHHhccCCCCHHHHHHHHhhCCCCCCHHHHHHHH------HhccCHHHHHHHHHHHHhCCCCCCcHHH
Q 005178 116 SYNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTRENALLIL------NSLKFWQKSYFFFNWIKSQNLFPMETIF 189 (710)
Q Consensus 116 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l------~~l~~~~~A~~~~~~~~~~~~~~~~~~~ 189 (710)
..+|....+..++..+....+....+.+++...+........+..+ ..+.++++|+..++ .+... ..|+..+
T Consensus 106 ~ldP~n~~~~~~La~i~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~-~~~~~~v 183 (987)
T PRK09782 106 KRHPGDARLERSLAAIPVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFA-ASPEGKT 183 (987)
T ss_pred hcCcccHHHHHHHHHhccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhC-CCCCcHH
Confidence 3444444455545555444445556666666666555544333332 12445677777776 43332 3334444
Q ss_pred HHHH-HHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005178 190 YNVT-MKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKR-CNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267 (710)
Q Consensus 190 ~~~l-i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 267 (710)
.... ..+|.+.|++++|+.++.++.+.+.. +..-...+..+|.. .++ +++..++.. .+.-+...+..++..|
T Consensus 184 L~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~y 257 (987)
T PRK09782 184 LRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATAL 257 (987)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHH
Confidence 4444 88899999999999999999988643 44545666667777 366 777777553 2235788888999999
Q ss_pred HHcCCHHHHHHHHHHHHhCCCC-CCHHHHH------------------------------HHHHHHHhcCC---------
Q 005178 268 AKSGKVEEVLSLYERGVASGWK-PDPIAFS------------------------------VLGKMFGESGD--------- 307 (710)
Q Consensus 268 ~~~g~~~~A~~~~~~~~~~g~~-~~~~~~~------------------------------~li~~~~~~g~--------- 307 (710)
.+.|+.++|.++++++...-.. |...+|- .++..+.+.++
T Consensus 258 i~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (987)
T PRK09782 258 AYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA 337 (987)
T ss_pred HHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 9999999999988886532111 1111111 11233333333
Q ss_pred ------------------------------------------------------HHHHHHHHHHHHHC-C-CCCCHHHHH
Q 005178 308 ------------------------------------------------------YDGIRYVLQEMKSL-G-VQPNLVVYN 331 (710)
Q Consensus 308 ------------------------------------------------------~~~A~~~~~~m~~~-g-~~p~~~~~~ 331 (710)
.++|.++|+..... + ...+.....
T Consensus 338 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 417 (987)
T PRK09782 338 TLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMA 417 (987)
T ss_pred CCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHH
Confidence 33333333333321 0 011222233
Q ss_pred HHHHHHHHcCC---HHHHHHH----------------------HHHHHHC-CC-CC--CHHHHHHHHHHHHhcCCHHHHH
Q 005178 332 TLLEAMGKAGK---PGLARSL----------------------FDEMVES-GL-TP--DEKTLTALIKIYGKARWAKDAL 382 (710)
Q Consensus 332 ~li~~~~~~g~---~~~A~~~----------------------~~~m~~~-g~-~p--~~~~~~~li~~~~~~g~~~~A~ 382 (710)
-|+..|.+.+. ...+..+ +...... +. ++ +...|..+..++.. ++.++|+
T Consensus 418 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi 496 (987)
T PRK09782 418 RLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVAL 496 (987)
T ss_pred HHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHH
Confidence 44444444433 1122111 1111100 11 22 44555666666655 7788888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 005178 383 ELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462 (710)
Q Consensus 383 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 462 (710)
..|.+..... |+......+...+...|++++|...|+++... +|+...+..+...+.+.|+.++|...+++.++.
T Consensus 497 ~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~---~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l 571 (987)
T PRK09782 497 YAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH---DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR 571 (987)
T ss_pred HHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc---CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 8777777653 45444444455557899999999999998654 355566777888899999999999999999886
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHH
Q 005178 463 GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNL 542 (710)
Q Consensus 463 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 542 (710)
+.. +...+..+...+.+.|++++|+..+++.++ +.|+...+..+..++.+.|++++|+..++++...+|++..+...
T Consensus 572 ~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~n 648 (987)
T PRK09782 572 GLG-DNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAA 648 (987)
T ss_pred CCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 422 333344444455567999999999999987 45678889999999999999999999999999999999999999
Q ss_pred HHhhcCCcccHHHHHHHHHHh-ccCCCChh-hHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 005178 543 IEDNSTGFENIKEEFRNVIKD-TEVDARRP-FCNCLIDICRNRNLNERAHELLYLGTLYG 600 (710)
Q Consensus 543 L~~~~~~~~~~~~~a~~~~~~-~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 600 (710)
++..+...| ..++|...+++ +...|+.+ ++..++.++...|++++|+..|+++++..
T Consensus 649 LG~aL~~~G-~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 649 LGYALWDSG-DIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 998877777 45666666654 56677654 88999999999999999999999987543
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.83 E-value=3.2e-16 Score=178.36 Aligned_cols=405 Identities=11% Similarity=0.027 Sum_probs=306.2
Q ss_pred CCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005178 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAI 263 (710)
Q Consensus 184 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 263 (710)
+.+.....-.+.+..-.|+.++|++++.+..... +.+...+..+..++...|++++|.++|++.++... .+...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP-QNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHH
Confidence 4455555667778889999999999999998632 34566789999999999999999999999988742 257778889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 005178 264 LDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343 (710)
Q Consensus 264 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 343 (710)
+.++...|++++|+..++++.+.. +.+.. +..+..++...|+.++|+..++++.+.. +-+...+..+..++...+..
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCh
Confidence 999999999999999999998873 44566 8889999999999999999999999864 23556667788888899999
Q ss_pred HHHHHHHHHHHHCCCCCCH------HHHHHHHHHHH-----hcCCH---HHHHHHHHHHHhC-CCCCCHH-HH----HHH
Q 005178 344 GLARSLFDEMVESGLTPDE------KTLTALIKIYG-----KARWA---KDALELWERMREN-KWPMDFI-LY----NTL 403 (710)
Q Consensus 344 ~~A~~~~~~m~~~g~~p~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-~~~~~~~-~~----~~l 403 (710)
+.|++.++.... .|+. .....++..+. ..+++ ++|++.++.+.+. ...|+.. .+ ...
T Consensus 167 e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~ 243 (765)
T PRK10049 167 APALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDR 243 (765)
T ss_pred HHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHH
Confidence 999999886653 2221 11122222222 22234 7788899988854 2222221 11 111
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc---CHHHHHHHHHHHHh
Q 005178 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI---NVMGCTCLIQCLGK 480 (710)
Q Consensus 404 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~ 480 (710)
+.++...|++++|+..|+.+.+.+...|+. ....+...|...|++++|+.+|+++.+..... ....+..+..++..
T Consensus 244 l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~ 322 (765)
T PRK10049 244 LGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLE 322 (765)
T ss_pred HHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHh
Confidence 344567799999999999999875211332 22335778999999999999999988753221 13556777778999
Q ss_pred cCCHHHHHHHHHHHHHCCC-----------CCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhh
Q 005178 481 ARRIDDLVRVFGVSIDRGV-----------KPDD---RLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDN 546 (710)
Q Consensus 481 ~g~~~~A~~~~~~m~~~~~-----------~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 546 (710)
.|++++|+.+++.+..... .|+. ..+..+..++...|+.++|+++++++....|++..+...++..
T Consensus 323 ~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l 402 (765)
T PRK10049 323 SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASV 402 (765)
T ss_pred cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999986421 2332 2455677788899999999999999999999999988888888
Q ss_pred cCCcccHHHHHHHHHHh-ccCCCChh-hHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 005178 547 STGFENIKEEFRNVIKD-TEVDARRP-FCNCLIDICRNRNLNERAHELLYLGTL 598 (710)
Q Consensus 547 ~~~~~~~~~~a~~~~~~-~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 598 (710)
+...| ..++|...+++ +...|+.. ++-.++..+...|++++|+.+++.+++
T Consensus 403 ~~~~g-~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 403 LQARG-WPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHhcC-CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 77767 56777777765 56778754 667788889999999999999998864
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.81 E-value=1.2e-14 Score=165.61 Aligned_cols=463 Identities=13% Similarity=0.025 Sum_probs=290.4
Q ss_pred hhCCCCCCHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHH--------HHccCChHHHHHHHHHHHHCC
Q 005178 146 TEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKS--------LRFGRQFQLIEQLANEMVSNE 217 (710)
Q Consensus 146 ~~~~~~~~~~~~~~~l~~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~--------~~~~g~~~~A~~l~~~m~~~g 217 (710)
+.....+........+..++++.+|..+++.+.... +.+..++..+... |.+. ++|.+.++ .....
T Consensus 103 kAv~ldP~n~~~~~~La~i~~~~kA~~~ye~l~~~~--P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~ 176 (987)
T PRK09782 103 DQLKRHPGDARLERSLAAIPVEVKSVTTVEELLAQQ--KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFA 176 (987)
T ss_pred HHHhcCcccHHHHHHHHHhccChhHHHHHHHHHHhC--CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhC
Confidence 334444444444444556677888888888887764 3344444444444 5555 44444444 22222
Q ss_pred CCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhCCCCCCHHHH
Q 005178 218 IELDNITYSTI-ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAK-SGKVEEVLSLYERGVASGWKPDPIAF 295 (710)
Q Consensus 218 ~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~g~~~~~~~~ 295 (710)
..|+....... ...|.+.|++++|++++.++.+.+.. +......|..+|.. .++ +++..+++. .++-+...+
T Consensus 177 ~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~ 250 (987)
T PRK09782 177 ASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSR 250 (987)
T ss_pred CCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHH
Confidence 33445555555 77888999999999999999988644 56667777778887 366 777777553 233678888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHH------------------------------HHHHHHHHHc----
Q 005178 296 SVLGKMFGESGDYDGIRYVLQEMKSLGVQ-PNLVVY------------------------------NTLLEAMGKA---- 340 (710)
Q Consensus 296 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~------------------------------~~li~~~~~~---- 340 (710)
..+...|.+.|+.++|..+++++...-.. |...+| -.++..+.+.
T Consensus 251 ~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (987)
T PRK09782 251 ITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYD 330 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHH
Confidence 99999999999999999998887543111 111111 0012222222
Q ss_pred -----------------------------------------------------------CCHHHHHHHHHHHHHC-C-CC
Q 005178 341 -----------------------------------------------------------GKPGLARSLFDEMVES-G-LT 359 (710)
Q Consensus 341 -----------------------------------------------------------g~~~~A~~~~~~m~~~-g-~~ 359 (710)
|+.++|..+|+..... + -.
T Consensus 331 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 410 (987)
T PRK09782 331 AAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDAR 410 (987)
T ss_pred HHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccc
Confidence 3333444444433321 0 11
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHH----------------------HHHHHhC-CC-CC--CHHHHHHHHHHHHHc
Q 005178 360 PDEKTLTALIKIYGKARW---AKDALEL----------------------WERMREN-KW-PM--DFILYNTLLNMCADI 410 (710)
Q Consensus 360 p~~~~~~~li~~~~~~g~---~~~A~~~----------------------~~~m~~~-~~-~~--~~~~~~~li~~~~~~ 410 (710)
.+......++..|.+.+. ..++..+ +...... +. ++ +...|..+..++..
T Consensus 411 ~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~- 489 (987)
T PRK09782 411 LSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD- 489 (987)
T ss_pred cCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-
Confidence 122233345555555544 2222222 1111110 11 22 45566666666665
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 005178 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRV 490 (710)
Q Consensus 411 g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 490 (710)
++.++|...+.+.... .|+......+...+...|++++|...|+++... .|+...+..+..++.+.|+.++|..+
T Consensus 490 ~~~~eAi~a~~~Al~~---~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~ 564 (987)
T PRK09782 490 TLPGVALYAWLQAEQR---QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRW 564 (987)
T ss_pred CCcHHHHHHHHHHHHh---CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHH
Confidence 7888888877777664 355544444555567899999999999987653 34555667778888999999999999
Q ss_pred HHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHHHH-hccCCC
Q 005178 491 FGVSIDRGVKPDD-RLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIK-DTEVDA 568 (710)
Q Consensus 491 ~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~-~~~~~~ 568 (710)
+++.++.+ |+. ..+..+...+...|++++|...++++.+.+|+ ..+...++.++...| ..++|...++ .+...|
T Consensus 565 l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG-~~deA~~~l~~AL~l~P 640 (987)
T PRK09782 565 LQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRH-NVPAAVSDLRAALELEP 640 (987)
T ss_pred HHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCC
Confidence 99998754 433 33334444555669999999999999999997 667777887777767 5566666555 467777
Q ss_pred Chh-hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcccccccccchhccccc-ChHHHHHHHHHHHHHH
Q 005178 569 RRP-FCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSL-SVGAAQTALEEWMWTL 636 (710)
Q Consensus 569 ~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~-~~G~~~~Al~~~~~~~ 636 (710)
+.. .++.++.++...|++++|++.++++++.. |+ +...|......+ ..|..++|+..+.+.+
T Consensus 641 d~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~--P~----~~~a~~nLA~al~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 641 NNSNYQAALGYALWDSGDIAQSREMLERAHKGL--PD----DPALIRQLAYVNQRLDDMAATQHYARLVI 704 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 765 77889999999999999999999987542 33 223333332332 4577777777665543
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.78 E-value=7.2e-14 Score=156.03 Aligned_cols=399 Identities=11% Similarity=0.063 Sum_probs=211.7
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 005178 156 NALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRC 235 (710)
Q Consensus 156 ~~~~~l~~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~ 235 (710)
+.+.++...++.++|+.+++++... -+........+...|...|++++|+++|+++.+.... +...+..++..+...
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p--~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~ 149 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSS--MNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADA 149 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhc
Confidence 4444555555566666665555411 1222333333344555556666666666666554221 234444444555555
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005178 236 NLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVL 315 (710)
Q Consensus 236 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 315 (710)
++.++|++.++++... .|+...+..++..+...++..+|++.++++.+.. +-+...+..++..+.+.|-...|.++.
T Consensus 150 ~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~ 226 (822)
T PRK14574 150 GRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLA 226 (822)
T ss_pred CCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 6666666666555544 2333333333333333344444666666665542 233445555555555555555555544
Q ss_pred HHHHHCCCCCCHHHH------HHHHHHH-----HHcCC---HHHHHHHHHHHHHC-CCCCCH-HH----HHHHHHHHHhc
Q 005178 316 QEMKSLGVQPNLVVY------NTLLEAM-----GKAGK---PGLARSLFDEMVES-GLTPDE-KT----LTALIKIYGKA 375 (710)
Q Consensus 316 ~~m~~~g~~p~~~~~------~~li~~~-----~~~g~---~~~A~~~~~~m~~~-g~~p~~-~~----~~~li~~~~~~ 375 (710)
.+-... +.+....+ ..++..- ....+ .+.|+.-++.+... +-.|.. .. ..-.+-++...
T Consensus 227 ~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r 305 (822)
T PRK14574 227 KENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVR 305 (822)
T ss_pred HhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHh
Confidence 432211 00000000 0000000 00111 23344444444331 111221 11 12234456667
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC----CCCCHHHHHHHHHHHHhCCCHHH
Q 005178 376 RWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY----CKPDNYSYTAMLNIYGSGGNVDN 451 (710)
Q Consensus 376 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~ 451 (710)
+++.++++.|+.+...+.+....+-.++.++|...+..++|+.+|..+..... ..++......|..+|...+++++
T Consensus 306 ~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~ 385 (822)
T PRK14574 306 HQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDK 385 (822)
T ss_pred hhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHH
Confidence 77777777777777776554555667777777777777777777777755321 02234445667777777777777
Q ss_pred HHHHHHHHHHcCC-------------CcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 005178 452 AIELFEEMSELGV-------------AINV-MGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCE 517 (710)
Q Consensus 452 A~~~~~~m~~~~~-------------~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 517 (710)
|..+++++.+... .||- ..+..++..+.-.|++.+|++.++++...... |......+...+...|
T Consensus 386 A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg 464 (822)
T PRK14574 386 AYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARD 464 (822)
T ss_pred HHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcC
Confidence 7777777766211 1222 23344556667777777777777777654322 5566777777777777
Q ss_pred ChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHHHHh
Q 005178 518 TSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKD 563 (710)
Q Consensus 518 ~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~~ 563 (710)
.+.+|.+.++.+..+.|++..+...++......+ .+++|..++.+
T Consensus 465 ~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~-e~~~A~~~~~~ 509 (822)
T PRK14574 465 LPRKAEQELKAVESLAPRSLILERAQAETAMALQ-EWHQMELLTDD 509 (822)
T ss_pred CHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhh-hHHHHHHHHHH
Confidence 7777777777777777777766666665555444 45555555544
No 24
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.78 E-value=1.1e-16 Score=155.62 Aligned_cols=440 Identities=13% Similarity=0.058 Sum_probs=302.7
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHcCCCC----CHHHHHH
Q 005178 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST-IITCAKRCNLFDEAIEWFERMYKTGLMP----DEVTYSA 262 (710)
Q Consensus 188 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~~----~~~~~~~ 262 (710)
.+...|..-|..+....+|+..|+-+++...-|+.-.+.. +-..+.+...+.+|+++|+..+..-... .+...+.
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 3344456667888889999999999998877777655443 3347788889999999998877652211 2345677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC------------CHHHH
Q 005178 263 ILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP------------NLVVY 330 (710)
Q Consensus 263 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p------------~~~~~ 330 (710)
+...+.+.|+++.|+.-|++..+. .|+..+-..|+-++...|+-++..+.|.+|......+ +....
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 777789999999999999999886 5888777777778888999999999999998643222 22222
Q ss_pred HHH-----HHHHHHcC--CHHHHHHHHHHHHHCCCCCCHHH---H----------H--------HHHHHHHhcCCHHHHH
Q 005178 331 NTL-----LEAMGKAG--KPGLARSLFDEMVESGLTPDEKT---L----------T--------ALIKIYGKARWAKDAL 382 (710)
Q Consensus 331 ~~l-----i~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~---~----------~--------~li~~~~~~g~~~~A~ 382 (710)
+.- +.-.-+.+ +.++++-.--+++.--+.|+-.. | . .-..-|.+.|+++.|+
T Consensus 360 ~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ai 439 (840)
T KOG2003|consen 360 NEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAI 439 (840)
T ss_pred HHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHH
Confidence 211 11111111 11222222222222222232110 1 0 1123467899999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005178 383 ELWERMRENKWPMDFILYNTLLNMCAD--IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460 (710)
Q Consensus 383 ~~~~~m~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 460 (710)
++++-+.+..-+.-...-+.|-..+.- -.++..|.++-+...... ..+......-.+.-...|++++|...|++.+
T Consensus 440 eilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d--ryn~~a~~nkgn~~f~ngd~dka~~~ykeal 517 (840)
T KOG2003|consen 440 EILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID--RYNAAALTNKGNIAFANGDLDKAAEFYKEAL 517 (840)
T ss_pred HHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc--ccCHHHhhcCCceeeecCcHHHHHHHHHHHH
Confidence 999988876433333333333333222 346778888777776655 4566555555555667899999999999998
Q ss_pred HcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHH
Q 005178 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFL 540 (710)
Q Consensus 461 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 540 (710)
..+..-....|| +.-.+-..|++++|++.|-++... +.-+..+...+.+.|....+...|++++.++..+-|+++.++
T Consensus 518 ~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~il 595 (840)
T KOG2003|consen 518 NNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAIL 595 (840)
T ss_pred cCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHH
Confidence 743221222233 334567889999999999887643 223566777888899999999999999999999999999999
Q ss_pred HHHHhhcCCcccHHHHHHHHHHhccCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcccccccccchhcccc
Q 005178 541 NLIEDNSTGFENIKEEFRNVIKDTEVDAR-RPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRS 619 (710)
Q Consensus 541 ~~L~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 619 (710)
.-|+..|...|+..++....++....-|. ..+...|...|....-.++|+.+|+++. +...+...|..++..
T Consensus 596 skl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaa-------liqp~~~kwqlmias 668 (840)
T KOG2003|consen 596 SKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA-------LIQPNQSKWQLMIAS 668 (840)
T ss_pred HHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH-------hcCccHHHHHHHHHH
Confidence 99999888888777777777887766554 4466677777777788899999999864 233367889988777
Q ss_pred c--ChHHHHHHHHHHHHHHHHHH
Q 005178 620 L--SVGAAQTALEEWMWTLAKIV 640 (710)
Q Consensus 620 ~--~~G~~~~Al~~~~~~~~~~~ 640 (710)
+ ..|+++.|++.+...-|+.+
T Consensus 669 c~rrsgnyqka~d~yk~~hrkfp 691 (840)
T KOG2003|consen 669 CFRRSGNYQKAFDLYKDIHRKFP 691 (840)
T ss_pred HHHhcccHHHHHHHHHHHHHhCc
Confidence 5 34999999999877655543
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.77 E-value=9.7e-14 Score=155.01 Aligned_cols=430 Identities=11% Similarity=0.043 Sum_probs=314.8
Q ss_pred HHHHHhccCHHHHHHHHHHHHhCCCCCCc-HHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 005178 158 LLILNSLKFWQKSYFFFNWIKSQNLFPME-TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCN 236 (710)
Q Consensus 158 ~~~l~~l~~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g 236 (710)
..+...-+++..|+..|+.+.+.. +.+ ..++ .++..+...|+.++|+..+++.... ..........+...+...|
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEK 116 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcC
Confidence 344555667999999999998764 222 2344 8888899999999999999999832 1122333334455888899
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005178 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQ 316 (710)
Q Consensus 237 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 316 (710)
++++|+++|+++.+.... +...+..++..|...++.++|++.++++... .|+...+..++..+...++..+|++.++
T Consensus 117 dyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~e 193 (822)
T PRK14574 117 RWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASS 193 (822)
T ss_pred CHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHH
Confidence 999999999999998644 5777788899999999999999999999876 4666666556555655777777999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH------HHHHHHH---H--hcCC---HHHHH
Q 005178 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL------TALIKIY---G--KARW---AKDAL 382 (710)
Q Consensus 317 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~------~~li~~~---~--~~g~---~~~A~ 382 (710)
++.+.. +-+...+..++.++.+.|-...|.++..+-... +.+...-+ ..++..- . ...+ .+.|+
T Consensus 194 kll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~al 271 (822)
T PRK14574 194 EAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKAL 271 (822)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHH
Confidence 999874 336777888999999999999998777654321 11111001 1111100 0 1122 34555
Q ss_pred HHHHHHHhC-CC-CCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 005178 383 ELWERMREN-KW-PMDFILY----NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELF 456 (710)
Q Consensus 383 ~~~~~m~~~-~~-~~~~~~~----~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 456 (710)
.-++.+... +. ++....| .-.+-++...|++.++++.|+.+...+. +.-..+-..+.++|...++.++|..+|
T Consensus 272 a~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~-~~P~y~~~a~adayl~~~~P~kA~~l~ 350 (822)
T PRK14574 272 ADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGY-KMPDYARRWAASAYIDRRLPEKAAPIL 350 (822)
T ss_pred HHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCC-CCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 556665542 11 2222222 2335567889999999999999998874 334557889999999999999999999
Q ss_pred HHHHHcC-----CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------------CCCCHH-HHHHHHHHHHhcC
Q 005178 457 EEMSELG-----VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRG-------------VKPDDR-LCGCLLSVVSLCE 517 (710)
Q Consensus 457 ~~m~~~~-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-------------~~p~~~-~~~~ll~~~~~~g 517 (710)
.++.... ..++......|.-+|...+++++|..+++.+.+.. ..||-. .+..++..+.-.|
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~g 430 (822)
T PRK14574 351 SSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALN 430 (822)
T ss_pred HHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcC
Confidence 9997643 12345556889999999999999999999998721 223333 3334567788899
Q ss_pred ChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHHHHhc-cCCCChh-hHHHHHHHHHhCCCHHHHHHHHHH
Q 005178 518 TSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDT-EVDARRP-FCNCLIDICRNRNLNERAHELLYL 595 (710)
Q Consensus 518 ~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~~~-~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~ 595 (710)
+..+|++.++++....|.+..+...++..+...| +..+|++.++.. ...|+.. +.-.++.++...|++++|.++.+.
T Consensus 431 dl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg-~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~ 509 (822)
T PRK14574 431 DLPTAQKKLEDLSSTAPANQNLRIALASIYLARD-LPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDD 509 (822)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 9999999999999999999999988888777667 788888888764 4566654 566788888999999999998876
Q ss_pred HHH
Q 005178 596 GTL 598 (710)
Q Consensus 596 ~~~ 598 (710)
..+
T Consensus 510 l~~ 512 (822)
T PRK14574 510 VIS 512 (822)
T ss_pred HHh
Confidence 543
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.77 E-value=2.6e-14 Score=152.35 Aligned_cols=425 Identities=13% Similarity=0.091 Sum_probs=324.9
Q ss_pred HHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHcCCHHHHHHH
Q 005178 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIE--LDNITYSTIITCAKRCNLFDEAIEW 244 (710)
Q Consensus 167 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~~ 244 (710)
+..+++.+..+-..+ +.|+.+.+.|...|...|++..++.+...+...... .-...|-.+.++|-..|++++|...
T Consensus 252 ~~~~~~ll~~ay~~n--~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~y 329 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKEN--NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKY 329 (1018)
T ss_pred HHHHHHHHHHHHhhc--CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 778888888776654 456677899999999999999999999999876321 1234577888999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHH
Q 005178 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG----DYDGIRYVLQEMKS 320 (710)
Q Consensus 245 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~ 320 (710)
|.+..+....--+..+..|...|.+.|+++.+...|+.+.+.. +-+..+..+|...|...+ ..+.|..++.+..+
T Consensus 330 Y~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~ 408 (1018)
T KOG2002|consen 330 YMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLE 408 (1018)
T ss_pred HHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHh
Confidence 9888776322124456678899999999999999999998863 445677778888887775 56778888887776
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CC
Q 005178 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMV----ESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN---KW 393 (710)
Q Consensus 321 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~ 393 (710)
.- +.|...|-.+...+-.. +...++.+|.... ..+..+-....|.+...+...|++++|...|...... ..
T Consensus 409 ~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~ 486 (1018)
T KOG2002|consen 409 QT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVA 486 (1018)
T ss_pred cc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhc
Confidence 53 44777888777776554 4444477666544 4555677889999999999999999999999988765 12
Q ss_pred CCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcC
Q 005178 394 PMD------FILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467 (710)
Q Consensus 394 ~~~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 467 (710)
.+| ..+-..+...+-..++.+.|.++|..+.+.. +--+..|..++.+-...++..+|...+.+....+- .|
T Consensus 487 n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~-~n 563 (1018)
T KOG2002|consen 487 NKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS-SN 563 (1018)
T ss_pred CccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc-CC
Confidence 222 2234446677778889999999999999875 44566677776555567888999999999887533 36
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh------------cCChHHHHHHHHHHHHhCC
Q 005178 468 VMGCTCLIQCLGKARRIDDLVRVFGVSIDR-GVKPDDRLCGCLLSVVSL------------CETSEDVGKVITCLQQANP 534 (710)
Q Consensus 468 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~~~~~------------~g~~~~a~~~~~~~~~~~p 534 (710)
...++-+...+.+...+.-|.+-|+...+. ...+|.....+|.+.|.+ .+..+.|.++|.++.+.+|
T Consensus 564 p~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dp 643 (1018)
T KOG2002|consen 564 PNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDP 643 (1018)
T ss_pred cHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCc
Confidence 777777888888888898898877777633 334677777777876664 3456788899999999999
Q ss_pred cHHHHHHHHHhhcCCcccHHHHHHHHHHhccCC--CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 005178 535 KLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVD--ARRPFCNCLIDICRNRNLNERAHELLYLGTLYG 600 (710)
Q Consensus 535 ~~~~~~~~L~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 600 (710)
.+..+.+.+|.+++..| .+.+|..+|.+.... ....+|-.++.+|..+|++..|+++|+..+..-
T Consensus 644 kN~yAANGIgiVLA~kg-~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf 710 (1018)
T KOG2002|consen 644 KNMYAANGIGIVLAEKG-RFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKF 710 (1018)
T ss_pred chhhhccchhhhhhhcc-CchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99988899988888767 778888888775432 233488899999999999999999999876543
No 27
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=1.8e-13 Score=132.93 Aligned_cols=393 Identities=19% Similarity=0.188 Sum_probs=224.6
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHHcCCHHHH-HHHHHHHHHcC-----------
Q 005178 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIIT--CAKRCNLFDEA-IEWFERMYKTG----------- 252 (710)
Q Consensus 187 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~--~~~~~g~~~~A-~~~~~~m~~~g----------- 252 (710)
+.+-|.|+.+ ...|.+.++.-+|+.|...|+..+...-..|+. +|....++--| .+.|-.|...|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 4445555554 345667777777777777776666655555544 22222222111 22333333222
Q ss_pred --------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 005178 253 --------LMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQ 324 (710)
Q Consensus 253 --------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 324 (710)
.+-+..+|..||.++|+-...+.|.++|++......+.+..+||.+|.+-.-.. ..+++.+|....+.
T Consensus 195 vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 195 VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMT 270 (625)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcC
Confidence 122556777777777777777777777777766666777777777776543222 26677777777777
Q ss_pred CCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHh----CCCC-
Q 005178 325 PNLVVYNTLLEAMGKAGKPGL----ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD-ALELWERMRE----NKWP- 394 (710)
Q Consensus 325 p~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~----~~~~- 394 (710)
||..|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++.. +.++
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp 350 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKP 350 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccC
Confidence 777777777777777776654 45566777777777777777777777777666533 3444444332 1121
Q ss_pred ---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC---CCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 005178 395 ---MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY---CKPD---NYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465 (710)
Q Consensus 395 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 465 (710)
-|...|...+..|....+.+-|.++..-...... +.|+ ..-|..+....|+....+.-...|+.|.-.-+-
T Consensus 351 ~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~ 430 (625)
T KOG4422|consen 351 ITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYF 430 (625)
T ss_pred CCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceec
Confidence 1344555666667777777777776665544221 1222 233556666677777777777777777766566
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHH---HHHHH
Q 005178 466 INVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLV---AFLNL 542 (710)
Q Consensus 466 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~ 542 (710)
|+..+...++++..-.|+++-.-+++..++..|-..+...-..++..++... .+|+.. .+-..
T Consensus 431 p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k--------------~hp~tp~r~Ql~~~ 496 (625)
T KOG4422|consen 431 PHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK--------------LHPLTPEREQLQVA 496 (625)
T ss_pred CCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC--------------CCCCChHHHHHHHH
Confidence 6777777777777777777777777777766554322222222222222111 123211 22222
Q ss_pred HHhhcCCcccHHHHHHHHHHhccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 005178 543 IEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLYG 600 (710)
Q Consensus 543 L~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 600 (710)
.+.+-+...+..+.+..-+.+.... ....+..+-.+.+.|+.++|.++|......+
T Consensus 497 ~ak~aad~~e~~e~~~~R~r~~~~~--~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~ 552 (625)
T KOG4422|consen 497 FAKCAADIKEAYESQPIRQRAQDWP--ATSLNCIAILLLRAGRTQKAWEMLGLFLRKH 552 (625)
T ss_pred HHHHHHHHHHHHHhhHHHHHhccCC--hhHHHHHHHHHHHcchHHHHHHHHHHHHhcC
Confidence 2222111111222222222221222 2245666667889999999999998875544
No 28
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.70 E-value=1e-11 Score=126.98 Aligned_cols=468 Identities=12% Similarity=0.061 Sum_probs=354.0
Q ss_pred CCCCCCHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 005178 148 IPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227 (710)
Q Consensus 148 ~~~~~~~~~~~~~l~~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ 227 (710)
+...+..+++-.-.-.+...+.|..+.-...+. .+.++..|--.++.= .+...=.+++++.++. ++-++..|-.
T Consensus 312 Ce~cprSeDvWLeaiRLhp~d~aK~vvA~Avr~--~P~Sv~lW~kA~dLE---~~~~~K~RVlRKALe~-iP~sv~LWKa 385 (913)
T KOG0495|consen 312 CEECPRSEDVWLEAIRLHPPDVAKTVVANAVRF--LPTSVRLWLKAADLE---SDTKNKKRVLRKALEH-IPRSVRLWKA 385 (913)
T ss_pred HhhCCchHHHHHHHHhcCChHHHHHHHHHHHHh--CCCChhhhhhHHhhh---hHHHHHHHHHHHHHHh-CCchHHHHHH
Confidence 333343333333333344455555555444433 344444443332221 2223335666666665 3335556644
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 005178 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307 (710)
Q Consensus 228 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 307 (710)
.+ .....+.|.-++.+..+.- ..+...| -+|.+..-++.|.++++...+. ++.+...|.+-...--..|.
T Consensus 386 AV----elE~~~darilL~rAvecc-p~s~dLw----lAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn 455 (913)
T KOG0495|consen 386 AV----ELEEPEDARILLERAVECC-PQSMDLW----LALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGN 455 (913)
T ss_pred HH----hccChHHHHHHHHHHHHhc-cchHHHH----HHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCC
Confidence 44 4466677888888888752 2244444 4566778899999999999875 67888999888888888999
Q ss_pred HHHHHHHHHHH----HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHH
Q 005178 308 YDGIRYVLQEM----KSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD--EKTLTALIKIYGKARWAKDA 381 (710)
Q Consensus 308 ~~~A~~~~~~m----~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A 381 (710)
.+...+++++- ...|+..+..-|-.=...|-..|..-.+..+....+..|+... ..||..-...|.+.+.++-|
T Consensus 456 ~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~ca 535 (913)
T KOG0495|consen 456 VDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECA 535 (913)
T ss_pred HHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHH
Confidence 99999888764 4578888999999889999999999999999999888876543 56888899999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 005178 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461 (710)
Q Consensus 382 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (710)
+.+|...++- ++-+...|...+..--..|..++-..+|++....- +.....|.....-+...|++..|..++.++.+
T Consensus 536 rAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~--pkae~lwlM~ake~w~agdv~~ar~il~~af~ 612 (913)
T KOG0495|consen 536 RAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC--PKAEILWLMYAKEKWKAGDVPAARVILDQAFE 612 (913)
T ss_pred HHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 9999999876 34477888888888888999999999999998864 66777888888889999999999999999998
Q ss_pred cCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHH
Q 005178 462 LGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLN 541 (710)
Q Consensus 462 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 541 (710)
.... +...|-+-+........++.|..+|.+... ..|+..+|.--+....-.++.++|.+++++..+..|+..-++-
T Consensus 613 ~~pn-seeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~l 689 (913)
T KOG0495|consen 613 ANPN-SEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWL 689 (913)
T ss_pred hCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHH
Confidence 6544 678899999999999999999999998765 5678888888888888899999999999999999999999999
Q ss_pred HHHhhcCCcccHHHHHHHHHHhccCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcccccccccchhccccc
Q 005178 542 LIEDNSTGFENIKEEFRNVIKDTEVDAR-RPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSL 620 (710)
Q Consensus 542 ~L~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 620 (710)
++|..+.+.++.-.....|......-|. .+.|-.|...--+.|.+-+|+.+|+++.-.+ +++..-|-..++.-
T Consensus 690 mlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN------Pk~~~lwle~Ir~E 763 (913)
T KOG0495|consen 690 MLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN------PKNALLWLESIRME 763 (913)
T ss_pred HHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC------CCcchhHHHHHHHH
Confidence 9998877666444444556666777665 4589999999999999999999999876332 23677888776663
Q ss_pred -ChHHHHHHHHHHHHHHHHHHHhc
Q 005178 621 -SVGAAQTALEEWMWTLAKIVLRE 643 (710)
Q Consensus 621 -~~G~~~~Al~~~~~~~~~~~~~~ 643 (710)
..|+.+.|-...-+.+++....|
T Consensus 764 lR~gn~~~a~~lmakALQecp~sg 787 (913)
T KOG0495|consen 764 LRAGNKEQAELLMAKALQECPSSG 787 (913)
T ss_pred HHcCCHHHHHHHHHHHHHhCCccc
Confidence 56888888777766666554444
No 29
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.68 E-value=4.4e-11 Score=122.43 Aligned_cols=435 Identities=13% Similarity=0.074 Sum_probs=345.8
Q ss_pred CCCHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHH----HHCCCCCCHHHHH
Q 005178 151 QPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEM----VSNEIELDNITYS 226 (710)
Q Consensus 151 ~~~~~~~~~~l~~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m----~~~g~~p~~~~~~ 226 (710)
.+...+....|..+..++.|..+++.+++. ++.+..+|-+-...=-.+|+.+...+++++- ...|+..+...|-
T Consensus 406 cp~s~dLwlAlarLetYenAkkvLNkaRe~--iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl 483 (913)
T KOG0495|consen 406 CPQSMDLWLALARLETYENAKKVLNKAREI--IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWL 483 (913)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhh--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHH
Confidence 444455555666666789999999999887 6788888988888888899999999887764 4568888999998
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005178 227 TIITCAKRCNLFDEAIEWFERMYKTGLMP--DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304 (710)
Q Consensus 227 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 304 (710)
.=...|-..|..--+..+....+..|+.- -..||+.-...|.+.+.++-|..+|...++- .+.+...|...+..--.
T Consensus 484 ~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~ 562 (913)
T KOG0495|consen 484 KEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKS 562 (913)
T ss_pred HHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHh
Confidence 88888989999999999998888887753 2568999999999999999999999999875 35567888888888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005178 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384 (710)
Q Consensus 305 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 384 (710)
.|..++...+|++.... ++-....|-....-+-..|+...|..++.+..+.. +-+...|-+-+.....+..++.|..+
T Consensus 563 hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~l 640 (913)
T KOG0495|consen 563 HGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDL 640 (913)
T ss_pred cCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHH
Confidence 99999999999999885 34455677777888888999999999999999874 34678898899999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 005178 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464 (710)
Q Consensus 385 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 464 (710)
|.+.... .++..+|.--+...-..++.++|.+++++..+.- +.-...|..+.+.+-+.++++.|...|..-.+. .
T Consensus 641 lakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f--p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-c 715 (913)
T KOG0495|consen 641 LAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSF--PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-C 715 (913)
T ss_pred HHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC--CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-C
Confidence 9998864 5677777776777777899999999999998864 445678889999999999999999988776553 2
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHH
Q 005178 465 AINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIE 544 (710)
Q Consensus 465 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~ 544 (710)
+-....|..|...--+.|.+-.|..++++....+.+ +...|...+.+-.+.|+.+.|..++.++.+.-|+..-.+.--.
T Consensus 716 P~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI 794 (913)
T KOG0495|consen 716 PNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAI 794 (913)
T ss_pred CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHH
Confidence 224567777878888899999999999999877655 6778999999999999999999999999998888765542222
Q ss_pred hhcCCcccHHHHHHHHHHhccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 005178 545 DNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLY 599 (710)
Q Consensus 545 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 599 (710)
.. ...++.......-+++-..+| .+.-+....++...+++.|++.|+++...
T Consensus 795 ~l-e~~~~rkTks~DALkkce~dp--hVllaia~lfw~e~k~~kar~Wf~Ravk~ 846 (913)
T KOG0495|consen 795 WL-EPRPQRKTKSIDALKKCEHDP--HVLLAIAKLFWSEKKIEKAREWFERAVKK 846 (913)
T ss_pred Hh-ccCcccchHHHHHHHhccCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 21 111223333444444444444 35557777788888999999999988744
No 30
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.68 E-value=1.4e-12 Score=139.44 Aligned_cols=445 Identities=13% Similarity=0.069 Sum_probs=311.7
Q ss_pred HHhhCCCCCCHHHHHHHHHhc----cCHHHHHHHHHHHHhCCCCC-CcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCC
Q 005178 144 AITEIPHQPTRENALLILNSL----KFWQKSYFFFNWIKSQNLFP-METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEI 218 (710)
Q Consensus 144 ~l~~~~~~~~~~~~~~~l~~l----~~~~~A~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 218 (710)
+..++...+....++..|... +++..+..+.+-+....... --...|--+.++|-..|++++|...|.+....
T Consensus 259 l~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~-- 336 (1018)
T KOG2002|consen 259 LQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA-- 336 (1018)
T ss_pred HHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--
Confidence 334555555555554444333 25777777777666543111 12345778999999999999999999887765
Q ss_pred CCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhCCCCCCH
Q 005178 219 ELDNITY--STIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG----KVEEVLSLYERGVASGWKPDP 292 (710)
Q Consensus 219 ~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~g~~~~~ 292 (710)
.+|.+++ --+...+.+.|+++.+...|+.+.+... -+..+...|...|...+ ..+.|..++.+..+.- +.|.
T Consensus 337 ~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p-~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~ 414 (1018)
T KOG2002|consen 337 DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLP-NNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDS 414 (1018)
T ss_pred CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCc-chHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccH
Confidence 4555444 4566789999999999999999988742 25677888888887775 5677777777777653 5677
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCH---
Q 005178 293 IAFSVLGKMFGESGDYDGIRYVLQEMK----SLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES---GLTPDE--- 362 (710)
Q Consensus 293 ~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~--- 362 (710)
..|-.+..+|-...-+.. +.+|.... ..+-.+.....|.+...+...|+++.|...|...... ...++.
T Consensus 415 ~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~ 493 (1018)
T KOG2002|consen 415 EAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKS 493 (1018)
T ss_pred HHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcccccc
Confidence 888877777765544433 66665543 4555678889999999999999999999999988754 122333
Q ss_pred ---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHH
Q 005178 363 ---KTLTALIKIYGKARWAKDALELWERMRENKWPMD-FILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTA 438 (710)
Q Consensus 363 ---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 438 (710)
.+--.+...+-..++.+.|.+.|..+.+.. |. +..|..++.+.-..+...+|...+......+ ..++..++.
T Consensus 494 ~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d--~~np~arsl 569 (1018)
T KOG2002|consen 494 TNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID--SSNPNARSL 569 (1018)
T ss_pred chhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc--cCCcHHHHH
Confidence 222235666677789999999999998762 23 2334444433444577889999999988876 566777777
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHc-CCCcCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHHCCCCCCHHH
Q 005178 439 MLNIYGSGGNVDNAIELFEEMSEL-GVAINVMGCTCLIQCLGK------------ARRIDDLVRVFGVSIDRGVKPDDRL 505 (710)
Q Consensus 439 li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~------------~g~~~~A~~~~~~m~~~~~~p~~~~ 505 (710)
+.+.|.+...+..|.+-|..+.+. ...+|..+..+|.+.|.+ .+..+.|+++|.+.+....+ |...
T Consensus 570 ~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yA 648 (1018)
T KOG2002|consen 570 LGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYA 648 (1018)
T ss_pred HHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhh
Confidence 888888888888888877766553 223577777777765542 34567888888888875433 5556
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHHH---HhccCCCChhhHHHHHHHHHh
Q 005178 506 CGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVI---KDTEVDARRPFCNCLIDICRN 582 (710)
Q Consensus 506 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~---~~~~~~~~~~~~~~l~~~~~~ 582 (710)
-|.+.-+++..|++.+|..+|.++.+..-+...++-.|+.|+...|++..++.-|- ++.....+..+...|..++.+
T Consensus 649 ANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~ 728 (1018)
T KOG2002|consen 649 ANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYE 728 (1018)
T ss_pred ccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 67778888899999999999999887665666677777777776674444333332 223334456688889999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 005178 583 RNLNERAHELLYLGTL 598 (710)
Q Consensus 583 ~g~~~~A~~~~~~~~~ 598 (710)
.|.+.+|.+.+..+..
T Consensus 729 ~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 729 AGKLQEAKEALLKARH 744 (1018)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 9999999888877653
No 31
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=6.5e-12 Score=123.65 Aligned_cols=330 Identities=13% Similarity=0.082 Sum_probs=251.5
Q ss_pred CCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHH
Q 005178 183 FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPD--EVTY 260 (710)
Q Consensus 183 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~ 260 (710)
...|.+.+-.....+.+.|....|++.|...+.. -+..|.+.+....-..+.+.+. .... |...| ...=
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~----~l~~-~l~~~~h~M~~ 230 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILS----ILVV-GLPSDMHWMKK 230 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHH----HHHh-cCcccchHHHH
Confidence 4567777777777888999999999999888765 2233444443322223333332 2222 22212 1222
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHH
Q 005178 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGV--QPNLVVYNTLLEAMG 338 (710)
Q Consensus 261 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~ 338 (710)
-.+..+|....+.+++..-.+.....|++-+...-+....+.....++++|+.+|+++.+... --|..+|..++-.-.
T Consensus 231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~ 310 (559)
T KOG1155|consen 231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHh
Confidence 345567777789999999999999998877777777777778889999999999999998631 126678887765543
Q ss_pred HcCCHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005178 339 KAGKPG-LARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417 (710)
Q Consensus 339 ~~g~~~-~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 417 (710)
...++. -|..++. + . +--..|+.++...|+-.++.++|...|++..+.+.. ....|+.+.+-|....+...|+
T Consensus 311 ~~skLs~LA~~v~~-i--d--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi 384 (559)
T KOG1155|consen 311 DKSKLSYLAQNVSN-I--D--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAI 384 (559)
T ss_pred hhHHHHHHHHHHHH-h--c--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHH
Confidence 322221 1222221 1 1 223468888999999999999999999999987655 5678999999999999999999
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005178 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDR 497 (710)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 497 (710)
+-++...+.+ +.|-..|..|.++|...+...-|+-.|++..+... .|...|.+|..+|.+.++.++|++.|.+....
T Consensus 385 ~sYRrAvdi~--p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP-nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 385 ESYRRAVDIN--PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKP-NDSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred HHHHHHHhcC--chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 9999999876 78999999999999999999999999999998543 27899999999999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005178 498 GVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ 531 (710)
Q Consensus 498 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 531 (710)
|-. +...+..|...|.+.++.++|.++|++..+
T Consensus 462 ~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 462 GDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred ccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 643 567899999999999999999999988755
No 32
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.66 E-value=1.1e-11 Score=120.66 Aligned_cols=240 Identities=17% Similarity=0.287 Sum_probs=196.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005178 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGK 300 (710)
Q Consensus 221 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 300 (710)
+..+|.+||.++++--..+.|.++|++......+.+..+||.+|.+-.-. ...+++.+|....+.||..|+|+++.
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHHH
Confidence 67899999999999999999999999998887788999999999775432 33789999999999999999999999
Q ss_pred HHHhcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHC--C--CC----CCHHHHHH
Q 005178 301 MFGESGDYDG----IRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGL-ARSLFDEMVES--G--LT----PDEKTLTA 367 (710)
Q Consensus 301 ~~~~~g~~~~----A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~--g--~~----p~~~~~~~ 367 (710)
+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++... | ++ .|...|..
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 9999998875 56788999999999999999999999999887644 55555555432 2 22 24556777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 005178 368 LIKIYGKARWAKDALELWERMRENK----WPMD---FILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440 (710)
Q Consensus 368 li~~~~~~g~~~~A~~~~~~m~~~~----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li 440 (710)
-+..|....+.+-|.++..-+.... +.|+ .+-|..+..+.|+....+.-...|+.|.-.-. -|+..+...++
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y-~p~~~~m~~~l 440 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAY-FPHSQTMIHLL 440 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccee-cCCchhHHHHH
Confidence 8888999999999999887765421 2233 33566788888999999999999999987664 68899999999
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCC
Q 005178 441 NIYGSGGNVDNAIELFEEMSELGVA 465 (710)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~m~~~~~~ 465 (710)
++....|.++-.-+++..+...|..
T Consensus 441 rA~~v~~~~e~ipRiw~D~~~~ght 465 (625)
T KOG4422|consen 441 RALDVANRLEVIPRIWKDSKEYGHT 465 (625)
T ss_pred HHHhhcCcchhHHHHHHHHHHhhhh
Confidence 9999999999999999999886543
No 33
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.65 E-value=3.4e-13 Score=131.61 Aligned_cols=117 Identities=12% Similarity=0.136 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHH
Q 005178 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELD----NITYSTIITCAKRCNLFDEAI 242 (710)
Q Consensus 167 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~ 242 (710)
..+|+..++-+.+..-++.....--.+...+.+.+.+.+|++.|+-.+..-...+ ....+.+-..+.+.|+++.|+
T Consensus 217 ~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dai 296 (840)
T KOG2003|consen 217 TAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAI 296 (840)
T ss_pred HHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhH
Confidence 4556666665554433332223333345566777777788877766665421111 123444444566777888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005178 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVA 285 (710)
Q Consensus 243 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 285 (710)
.-|+...+. .|+..+-..|+-++..-|+-++..+.|.+|+.
T Consensus 297 nsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ 337 (840)
T KOG2003|consen 297 NSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLID 337 (840)
T ss_pred hhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhc
Confidence 777776665 46665555555555566777777777777764
No 34
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=3.7e-10 Score=111.57 Aligned_cols=420 Identities=13% Similarity=0.129 Sum_probs=316.9
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHH
Q 005178 164 LKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDN-ITYSTIITCAKRCNLFDEAI 242 (710)
Q Consensus 164 l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~ 242 (710)
.+++..|..+|+++.... ..+...|--.+.+=.++.++..|..+++..+.. -|-+ ..|--.+..--..|++..|.
T Consensus 86 q~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred HHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHH
Confidence 345788999999988764 567888999999999999999999999999875 2333 34555555556689999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-
Q 005178 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL- 321 (710)
Q Consensus 243 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 321 (710)
++|++..+- .|+...|++.|+.=.+...++.|..+|++.+-. .|++.+|--....--++|....|..+|+...+.
T Consensus 162 qiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~ 237 (677)
T KOG1915|consen 162 QIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFL 237 (677)
T ss_pred HHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 999998875 899999999999999999999999999999874 599999999999999999999999999988763
Q ss_pred CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCH---HHHHH-----HHHHHHh
Q 005178 322 GV-QPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD--EKTLTALIKIYGKARWA---KDALE-----LWERMRE 390 (710)
Q Consensus 322 g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~---~~A~~-----~~~~m~~ 390 (710)
|- .-+...+++...--.++..++.|..+|+-.++. ++.+ ...|..+...--+-|+. ++++- -|+.+..
T Consensus 238 ~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~ 316 (677)
T KOG1915|consen 238 GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVS 316 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHH
Confidence 10 112234555555555678899999999988875 2333 34455555444455553 33332 2444554
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCH--HHHHHHHHH--------HHhCCCHHHHHHHHHHHH
Q 005178 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDN--YSYTAMLNI--------YGSGGNVDNAIELFEEMS 460 (710)
Q Consensus 391 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~li~~--------~~~~g~~~~A~~~~~~m~ 460 (710)
.+ +-|-.+|--.+..-...|+.+...++|++.+..- +|-. ..|...|.. -....+++.+.++|+..+
T Consensus 317 ~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv--pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l 393 (677)
T KOG1915|consen 317 KN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV--PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACL 393 (677)
T ss_pred hC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC--CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 43 3377778888888888999999999999998754 4532 222222211 124688999999999998
Q ss_pred HcCCCcCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcH
Q 005178 461 ELGVAINVMGCTCLIQCL----GKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKL 536 (710)
Q Consensus 461 ~~~~~p~~~~~~~li~~~----~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 536 (710)
+. ++....||..+--.| .++.++..|.+++...+ |.-|...+|...|..-.+.+.++...++|++..+..|.+
T Consensus 394 ~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~ 470 (677)
T KOG1915|consen 394 DL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPEN 470 (677)
T ss_pred hh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHh
Confidence 83 344455655554444 57889999999998864 577889999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCcccHHHHHHHHHHhccCCC--Chh--hHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 005178 537 VAFLNLIEDNSTGFENIKEEFRNVIKDTEVDA--RRP--FCNCLIDICRNRNLNERAHELLYLGTLY 599 (710)
Q Consensus 537 ~~~~~~L~~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 599 (710)
-..+.-++......| ..+.+..++.-.-.+| |.+ .|.+.|+.-...|.+++|+.++++.+..
T Consensus 471 c~~W~kyaElE~~Lg-dtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 471 CYAWSKYAELETSLG-DTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred hHHHHHHHHHHHHhh-hHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 887776666544445 5566777776544444 333 7999999999999999999999987644
No 35
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.60 E-value=1.2e-10 Score=123.96 Aligned_cols=358 Identities=13% Similarity=0.085 Sum_probs=270.0
Q ss_pred cCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005178 165 KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEW 244 (710)
Q Consensus 165 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 244 (710)
++.++|..++..++++. +.+...|..|..+|-..|+.+++...+-...... +-|...|..+.....+.|++++|.-.
T Consensus 153 g~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred CCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHH
Confidence 67999999999999884 6788899999999999999999998876666553 33678899999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHHHH
Q 005178 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS----VLGKMFGESGDYDGIRYVLQEMKS 320 (710)
Q Consensus 245 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~----~li~~~~~~g~~~~A~~~~~~m~~ 320 (710)
|.+.++.... +...+---+..|-+.|+...|..-|.++....-+.|..-+. .++..+...++-+.|.+.++....
T Consensus 230 y~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 230 YSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 9999998543 55566666788999999999999999998864222222222 345566777888999999988876
Q ss_pred CC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC---------------------------CCHHHHHHHHHHH
Q 005178 321 LG-VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT---------------------------PDEKTLTALIKIY 372 (710)
Q Consensus 321 ~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---------------------------p~~~~~~~li~~~ 372 (710)
.+ -..+...++.++..+.+...++.|......+...... ++..+ .-++-++
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL 387 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICL 387 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhh
Confidence 22 2345567889999999999999999988888762212 22222 1122233
Q ss_pred HhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHH
Q 005178 373 GKARWAKDALELWERMRENK--WPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450 (710)
Q Consensus 373 ~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 450 (710)
......+....+.....+.+ +.-+...|.-+..+|.+.|++.+|..+|..+..... -.+...|-.+..+|...|.++
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~-~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREG-YQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcc-ccchhhhHHHHHHHHHHhhHH
Confidence 34444444444444445544 344567889999999999999999999999998764 456789999999999999999
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcCChHHH
Q 005178 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSI--------DRGVKPDDRLCGCLLSVVSLCETSEDV 522 (710)
Q Consensus 451 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~~~~p~~~~~~~ll~~~~~~g~~~~a 522 (710)
+|...|+..+..... +...-..|...+.+.|+.++|++.++.+. ..+..|+..........+.+.|+.++-
T Consensus 467 ~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~f 545 (895)
T KOG2076|consen 467 EAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEF 545 (895)
T ss_pred HHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHH
Confidence 999999999885322 45566677778999999999999999864 234556666666777788889998876
Q ss_pred HHHHHHH
Q 005178 523 GKVITCL 529 (710)
Q Consensus 523 ~~~~~~~ 529 (710)
+.....+
T Consensus 546 i~t~~~L 552 (895)
T KOG2076|consen 546 INTASTL 552 (895)
T ss_pred HHHHHHH
Confidence 5544433
No 36
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.59 E-value=9.1e-12 Score=130.96 Aligned_cols=281 Identities=9% Similarity=0.049 Sum_probs=119.1
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHHcCCHHHH
Q 005178 200 GRQFQLIEQLANEMVSNEIELDNITYSTI-ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTY--SAILDVYAKSGKVEEV 276 (710)
Q Consensus 200 ~g~~~~A~~l~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~--~~li~~~~~~g~~~~A 276 (710)
.|+++.|++.+....+.. ++...+..+ ..+..+.|+++.|.+.|.++.+. .|+.... ......+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 356666665555444321 111222122 22335556666666666555543 2232211 1224455555666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHH
Q 005178 277 LSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL-------VVYNTLLEAMGKAGKPGLARSL 349 (710)
Q Consensus 277 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~A~~~ 349 (710)
...++++.+.. +-+...+..+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 66665555543 334455555555555556666666555555554322111 0111222222222223333333
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 005178 350 FDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429 (710)
Q Consensus 350 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 429 (710)
++.+.+. .+.+......+...+...|+.++|.+++++..+. .+|.... ++.+....++.+++.+..+...+..
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-- 324 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-- 324 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC--
Confidence 3333221 1223334444444444444444444444444432 1222111 1112222344444444444444333
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005178 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVS 494 (710)
Q Consensus 430 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 494 (710)
+.|...+..+...|.+.|++++|.+.|+.+.+ ..|+...|..+...+.+.|+.++|..++++.
T Consensus 325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33334444444444444444444444444444 2344444444444444444444444444433
No 37
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.58 E-value=2.3e-11 Score=128.64 Aligned_cols=131 Identities=11% Similarity=-0.082 Sum_probs=63.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHH--HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCH--HHH
Q 005178 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYS--YTAMLNIYGSGGNVDNAIELFEEMSELGVAINV--MGC 471 (710)
Q Consensus 396 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~ 471 (710)
+...+..+...+...|+.++|.+++++..+.. +.+... ...........++.+.+.+.++...+.... |. ...
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~-~~~~~ll 338 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD-KPKCCIN 338 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC-ChhHHHH
Confidence 44455555555555555555555555555543 111110 011111122234555555555555543211 22 344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 005178 472 TCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCL 529 (710)
Q Consensus 472 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 529 (710)
.++...|.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.
T Consensus 339 ~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 339 RALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4555556666666666666664333334555555556666666666666666666554
No 38
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=4.7e-11 Score=118.43 Aligned_cols=219 Identities=14% Similarity=0.066 Sum_probs=174.4
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHH
Q 005178 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDN 451 (710)
Q Consensus 372 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 451 (710)
+.-.|+.-.|..-|+..++....++ ..|--+..+|....+.++....|++....+ +-|+.+|..-.+++.-.+++++
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld--p~n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD--PENPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC--CCCCchhHhHHHHHHHHHHHHH
Confidence 4457888899999999988765543 337777888999999999999999999887 6788899999999999999999
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005178 452 AIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ 531 (710)
Q Consensus 452 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 531 (710)
|..=|++.+..... +...|..+.-+.-+.+++++++..|++.+++ +.--...|+-...++...++++.|.+.|+.+..
T Consensus 413 A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 413 AIADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 99999999985433 5677777777778899999999999999865 333456889999999999999999999999999
Q ss_pred hCCcHH------H-HH-HHHHhhcCCcccHHHHHHHHHHh-ccCCCChh-hHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005178 532 ANPKLV------A-FL-NLIEDNSTGFENIKEEFRNVIKD-TEVDARRP-FCNCLIDICRNRNLNERAHELLYLGT 597 (710)
Q Consensus 532 ~~p~~~------~-~~-~~L~~~~~~~~~~~~~a~~~~~~-~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~ 597 (710)
+.|... . .+ ..+... ...+...+|..++.+ +..+|.-. .|.+|+..-...|+.++|+++|++..
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~--qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVL--QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hccccccccccchhhhhhhHhhh--chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 888722 1 11 111111 123466777887765 56777654 78999999999999999999999865
No 39
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.57 E-value=8.6e-12 Score=131.90 Aligned_cols=285 Identities=11% Similarity=-0.021 Sum_probs=161.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHH
Q 005178 305 SGDYDGIRYVLQEMKSLGVQPNL-VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE--KTLTALIKIYGKARWAKDA 381 (710)
Q Consensus 305 ~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~A 381 (710)
.|+++.|.+.+.+..+. .|+. ..+-....++.+.|+++.|.++|.+..+.. |+. .........+...|+++.|
T Consensus 97 ~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred CCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHH
Confidence 45555555555554443 2222 222333444455555555555555554431 222 1222234455555666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHH----HHHHHHhCCCHHHHHHHHH
Q 005178 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTA----MLNIYGSGGNVDNAIELFE 457 (710)
Q Consensus 382 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~----li~~~~~~g~~~~A~~~~~ 457 (710)
...++.+.+.... +...+..+...|...|++++|.+++..+.+.+. .+...+.. ....+...+..+++...+.
T Consensus 173 l~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~--~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 173 RHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGL--FDDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 6666666555322 445555556666666666666666666665542 22222211 0111122222222233333
Q ss_pred HHHHcCC---CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHhC
Q 005178 458 EMSELGV---AINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRL-CGCLLSVVSLCETSEDVGKVITCLQQAN 533 (710)
Q Consensus 458 ~m~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 533 (710)
.+.+... +.+...+..++..+...|+.++|.+++++..+......... ...........++.+.+.+.++...+..
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 3333221 12667777777777778888888888777776432211111 1111112233466777888888888888
Q ss_pred CcHH--HHHHHHHhhcCCcccHHHHHHHHHH---hccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005178 534 PKLV--AFLNLIEDNSTGFENIKEEFRNVIK---DTEVDARRPFCNCLIDICRNRNLNERAHELLYLGT 597 (710)
Q Consensus 534 p~~~--~~~~~L~~~~~~~~~~~~~a~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 597 (710)
|++. .+.+.||+.+...+ ..++|.++++ .....|+...+..++..+.+.|+.++|.+++++.+
T Consensus 330 p~~~~~~ll~sLg~l~~~~~-~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHG-EFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred CCChhHHHHHHHHHHHHHcc-cHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8888 78888888776666 6777777877 45668888888899999999999999999999864
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=4.9e-11 Score=117.57 Aligned_cols=350 Identities=12% Similarity=0.071 Sum_probs=252.4
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC-HHHHHH-HHHHHHHcCC
Q 005178 160 ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELD-NITYST-IITCAKRCNL 237 (710)
Q Consensus 160 ~l~~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~-li~~~~~~g~ 237 (710)
++...+....|+..|...... .|..-.+|-.|.... -+.+.+..+ .. |...| ...-.. +..++....+
T Consensus 173 v~k~~~~~s~A~~sfv~~v~~--~P~~W~AWleL~~li---t~~e~~~~l----~~-~l~~~~h~M~~~F~~~a~~el~q 242 (559)
T KOG1155|consen 173 VLKELGLLSLAIDSFVEVVNR--YPWFWSAWLELSELI---TDIEILSIL----VV-GLPSDMHWMKKFFLKKAYQELHQ 242 (559)
T ss_pred HHHhhchHHHHHHHHHHHHhc--CCcchHHHHHHHHhh---chHHHHHHH----Hh-cCcccchHHHHHHHHHHHHHHHH
Confidence 445556678888888776544 343444444444333 233333222 21 12212 222222 2336777778
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHH-HHHH
Q 005178 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW--KPDPIAFSVLGKMFGESGDYDG-IRYV 314 (710)
Q Consensus 238 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~-A~~~ 314 (710)
.+++..-.+.....|..-+...-+....+.-...++++|+.+|+++.+... --|..+|..++-.--.+.++.- |..+
T Consensus 243 ~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v 322 (559)
T KOG1155|consen 243 HEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNV 322 (559)
T ss_pred HHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHH
Confidence 899999888888888775555555555666678899999999999998731 1256778777644333222221 2222
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 005178 315 LQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWP 394 (710)
Q Consensus 315 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 394 (710)
+ .+- +--+.|...+.+-|.-.++.++|...|+..++.+ +.....|+.+.+-|....+...|++-|+..++.+..
T Consensus 323 ~-~id----KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~ 396 (559)
T KOG1155|consen 323 S-NID----KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR 396 (559)
T ss_pred H-Hhc----cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch
Confidence 2 111 2345577788888999999999999999999875 445678999999999999999999999999997544
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHH
Q 005178 395 MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474 (710)
Q Consensus 395 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 474 (710)
|-..|..|.++|.-.+...=|+-.|++..+.. +.|...|.+|.++|.+.++.++|++.|.+....|-. +...+..|
T Consensus 397 -DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k--PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~L 472 (559)
T KOG1155|consen 397 -DYRAWYGLGQAYEIMKMHFYALYYFQKALELK--PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRL 472 (559)
T ss_pred -hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHH
Confidence 88999999999999999999999999999876 678999999999999999999999999999987643 67899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH----CCCCCC-HH-HHHHHHHHHHhcCChHHHHHHHHHH
Q 005178 475 IQCLGKARRIDDLVRVFGVSID----RGVKPD-DR-LCGCLLSVVSLCETSEDVGKVITCL 529 (710)
Q Consensus 475 i~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~~-~~~~ll~~~~~~g~~~~a~~~~~~~ 529 (710)
.+.|-+.++.++|...|++-++ .|..-+ .+ ...-|..-+.+.+++++|..+-...
T Consensus 473 akLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 473 AKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 9999999999999999988775 233323 22 2223555667788888887654443
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.56 E-value=3e-11 Score=126.99 Aligned_cols=283 Identities=10% Similarity=0.042 Sum_probs=219.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCCHHHH
Q 005178 235 CNLFDEAIEWFERMYKTGLMPDEVT-YSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS--VLGKMFGESGDYDGI 311 (710)
Q Consensus 235 ~g~~~~A~~~~~~m~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~--~li~~~~~~g~~~~A 311 (710)
.|++++|.+.+....+.. ++... |.....+..+.|+++.|...|.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 699999998888766542 12333 333345558899999999999999875 46654333 346788999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHH
Q 005178 312 RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE-------KTLTALIKIYGKARWAKDALEL 384 (710)
Q Consensus 312 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~A~~~ 384 (710)
...++++.+.. +-+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999998875 346778889999999999999999999999987654322 1333344444445556666777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 005178 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464 (710)
Q Consensus 385 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 464 (710)
++.+.+. .+.+......+...+...|+.++|.+++++..+. +++.... ++.+....++.+++.+..+...+...
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P 325 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHG 325 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCC
Confidence 7766443 3447888889999999999999999999999874 4555322 33444466999999999999988654
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005178 465 AINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ 531 (710)
Q Consensus 465 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 531 (710)
. |...+..+...|.+.|++++|.+.|+.+.+ ..|+...|..+..++.+.|+.++|.+++++...
T Consensus 326 ~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 326 D-TPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3 677788999999999999999999999987 578999999999999999999999999987754
No 42
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=2e-12 Score=133.37 Aligned_cols=289 Identities=11% Similarity=0.009 Sum_probs=192.5
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005178 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG--WKPDPIAFSVLGKMFGESGDYDGIRYV 314 (710)
Q Consensus 237 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~ 314 (710)
+..+|+..|..+.+.- .-+..+...+..+|...+++++|+++|+.+.+.. .--+...|.+.+--+-+. -++.+
T Consensus 334 ~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 4567777777755442 2234566677778888888888888888877642 112456666666544321 11222
Q ss_pred H-HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 005178 315 L-QEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKW 393 (710)
Q Consensus 315 ~-~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 393 (710)
+ +++.+. -+-.+.+|-++.++|.-+++.+.|++.|++.++.+ +-...+|+.+..-+.....+|.|...|+..+....
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 2 122221 13356678888888888888888888888877653 22566777777777777788888888887766522
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHH
Q 005178 394 PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTC 473 (710)
Q Consensus 394 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 473 (710)
+ +...|.-+.-.|.+.++++.|+-.|+...+.+ +.+.+....++..+.+.|+.|+|+++++++...+.+ |...--.
T Consensus 487 r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN--P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~ 562 (638)
T KOG1126|consen 487 R-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN--PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYH 562 (638)
T ss_pred h-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC--ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHH
Confidence 2 23334445667778888888888888887766 567777777777888888888888888888775554 4444444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHH
Q 005178 474 LIQCLGKARRIDDLVRVFGVSIDRGVKPDDR-LCGCLLSVVSLCETSEDVGKVITCLQQANPKLVA 538 (710)
Q Consensus 474 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 538 (710)
.+..+...+++++|+..++++.+ +.|+.. ++..+...|.+.|+.+.|..-|.-+..++|.-..
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 55666777888888888888776 455544 5666777788888888888777777777775443
No 43
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.55 E-value=2e-10 Score=122.36 Aligned_cols=340 Identities=12% Similarity=0.114 Sum_probs=245.1
Q ss_pred CcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005178 185 METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAIL 264 (710)
Q Consensus 185 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 264 (710)
|.+...-...+.+...|++++|.+++.++++.. +.+...|.+|..+|-..|+.+++...+-.+...... |...|..+.
T Consensus 137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~la 214 (895)
T KOG2076|consen 137 PELRQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLA 214 (895)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHH
Confidence 333333334444555699999999999999874 346789999999999999999999877655544433 778999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHHc
Q 005178 265 DVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV----VYNTLLEAMGKA 340 (710)
Q Consensus 265 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~li~~~~~~ 340 (710)
....+.|+++.|.-.|.++++.. +++...+---+..|-+.|+...|..-|.++.+...+.|.. ..-.++..+...
T Consensus 215 dls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~ 293 (895)
T KOG2076|consen 215 DLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITH 293 (895)
T ss_pred HHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999874 4555555566778999999999999999999863222222 223346667777
Q ss_pred CCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--------------------------
Q 005178 341 GKPGLARSLFDEMVESG-LTPDEKTLTALIKIYGKARWAKDALELWERMRENKW-------------------------- 393 (710)
Q Consensus 341 g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-------------------------- 393 (710)
++-+.|.+.++.....+ -..+...++.++..|.+...++.|......+.....
T Consensus 294 ~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~ 373 (895)
T KOG2076|consen 294 NERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKE 373 (895)
T ss_pred hHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCC
Confidence 88899999998887631 234556788899999999999999888887765221
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHH
Q 005178 394 -PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY-CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC 471 (710)
Q Consensus 394 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 471 (710)
.++..+. .+.-++......+....+.....+... ..-+...|.-+.++|...|++.+|+.+|..+......-+...|
T Consensus 374 ~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw 452 (895)
T KOG2076|consen 374 LSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVW 452 (895)
T ss_pred CCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhh
Confidence 2222221 122233334444444444444444331 1344567888888888999999999999888876555567888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005178 472 TCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD-RLCGCLLSVVSLCETSEDVGKVITCLQ 530 (710)
Q Consensus 472 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~ 530 (710)
-.+..+|...|.+++|++.|+..+.. .|+. ..-..|...+.+.|+.++|.+.++.+.
T Consensus 453 ~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 453 YKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 88888888899999999998888763 3432 344467777888888888888887765
No 44
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.54 E-value=5.6e-14 Score=141.12 Aligned_cols=258 Identities=16% Similarity=0.160 Sum_probs=68.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 005178 264 LDVYAKSGKVEEVLSLYERGVASG-WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342 (710)
Q Consensus 264 i~~~~~~g~~~~A~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 342 (710)
...+.+.|++++|+++++...... -+.|...|..+...+...++++.|...++++...+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 444445555555555553332221 1223333333444444455555555555555443311 23334444443 45555
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005178 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENK-WPMDFILYNTLLNMCADIGLVEEAERLFE 421 (710)
Q Consensus 343 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 421 (710)
+++|.+++.+..+. .++...+..++..+.+.++++++..+++.+.... .+.+...|..+...+.+.|+.++|++.++
T Consensus 93 ~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred cccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555555444332 1333344445555555555555555555544321 22344455555555555555555555555
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 005178 422 DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501 (710)
Q Consensus 422 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 501 (710)
+..+.. |.|......++..+...|+.+++..++....+.. +.|...|..+..+|...|+.++|+.+|++...... .
T Consensus 171 ~al~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p-~ 246 (280)
T PF13429_consen 171 KALELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP-D 246 (280)
T ss_dssp HHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST-T
T ss_pred HHHHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccc-c
Confidence 555544 3345555555555555555555555555554432 22334455555555555556666655555554221 1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 005178 502 DDRLCGCLLSVVSLCETSEDVGKVITCL 529 (710)
Q Consensus 502 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 529 (710)
|..+...+..++.+.|+.++|.++.+++
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp -HHHHHHHHHHHT---------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 4444445555555555555555555443
No 45
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.54 E-value=4.3e-14 Score=141.93 Aligned_cols=249 Identities=18% Similarity=0.160 Sum_probs=108.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005178 297 VLGKMFGESGDYDGIRYVLQEMKSLG-VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA 375 (710)
Q Consensus 297 ~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 375 (710)
.+...+.+.|++++|++++++..... .+.|...|..+...+...++++.|+..++++...+. -+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccc
Confidence 55778889999999999996654433 233455666677777788999999999999987652 255567777776 688
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 005178 376 RWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIEL 455 (710)
Q Consensus 376 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 455 (710)
+++++|.+++....+.. ++...+..++..+...++++++.++++.+......+.+...|..+...+.+.|+.++|...
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999988776553 4566677888889999999999999999876553356788899999999999999999999
Q ss_pred HHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCc
Q 005178 456 FEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPK 535 (710)
Q Consensus 456 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 535 (710)
+++.++.... |......++..+...|+.+++..+++...+.. ..|...+..+..+|...|+.++|..+|++..+.+|+
T Consensus 169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 169 YRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 9999885432 57788889999999999999888888887543 334557788899999999999999999999888887
Q ss_pred HHHHHHHHHhhcCCcc
Q 005178 536 LVAFLNLIEDNSTGFE 551 (710)
Q Consensus 536 ~~~~~~~L~~~~~~~~ 551 (710)
+..+...++.++...|
T Consensus 247 d~~~~~~~a~~l~~~g 262 (280)
T PF13429_consen 247 DPLWLLAYADALEQAG 262 (280)
T ss_dssp -HHHHHHHHHHHT---
T ss_pred cccccccccccccccc
Confidence 7766655555444333
No 46
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.53 E-value=3.3e-11 Score=113.56 Aligned_cols=267 Identities=18% Similarity=0.223 Sum_probs=165.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHHcCCHH
Q 005178 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL------VVYNTLLEAMGKAGKPG 344 (710)
Q Consensus 271 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~li~~~~~~g~~~ 344 (710)
++.++|.++|-+|.+.. +-+..+.-+|.+.|.+.|..|.|+++.+.+.+. ||. .+...|..-|...|-+|
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 34444444444444421 112223334444455555555555555544442 221 12333555566666677
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHH
Q 005178 345 LARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDF----ILYNTLLNMCADIGLVEEAERLF 420 (710)
Q Consensus 345 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~ 420 (710)
.|+.+|..+.+.+ ..-......|+..|-...++++|+++-+++.+.+..+.. ..|.-|...+....+++.|..++
T Consensus 125 RAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 125 RAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 7777776666543 223345556677777777777777777776665544332 23555556666677888888888
Q ss_pred HHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 005178 421 EDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500 (710)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 500 (710)
.+..+.+ +..+..-..+.+.+...|+++.|.+.++...+.+..--..+...|..+|.+.|+.++.+..+.++.+....
T Consensus 204 ~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 204 KKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred HHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 8888766 55666666777888888888888888888888665555677888888888889988888888888875444
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhh
Q 005178 501 PDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDN 546 (710)
Q Consensus 501 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 546 (710)
++.. ..+...-....-.++|..++.+-.+.+|+...+..++..-
T Consensus 282 ~~~~--l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~ 325 (389)
T COG2956 282 ADAE--LMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYH 325 (389)
T ss_pred ccHH--HHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhh
Confidence 4433 2333333333444677777777777778777777666543
No 47
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=2.3e-12 Score=132.84 Aligned_cols=265 Identities=14% Similarity=0.131 Sum_probs=173.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005178 272 KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG--VQPNLVVYNTLLEAMGKAGKPGLARSL 349 (710)
Q Consensus 272 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~ 349 (710)
+..+|+..|..+... +.-+..+...+..+|...+++++|.++|+.+.+.. ..-+..+|.+.+..+-+.- ++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v----~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV----ALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH----HHHH
Confidence 467788888885443 33344666677888888888888888888887642 1125567777665543221 1222
Q ss_pred H-HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 005178 350 F-DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428 (710)
Q Consensus 350 ~-~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 428 (710)
+ +++.+.. +-...+|.++...|.-.++.+.|++.|++....+.. ...+|+.+..-+.....+|.|...|+......
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~- 485 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD- 485 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-
Confidence 2 2222221 335677888888888888888888888887765322 56677777777777777888888888777544
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 005178 429 CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGC 508 (710)
Q Consensus 429 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 508 (710)
+.+..+|..|...|.+.++++.|.-.|+.+.+-+.. +.+....+...+-+.|+.|+|+++|+++...+.+ |...-..
T Consensus 486 -~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~ 562 (638)
T KOG1126|consen 486 -PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYH 562 (638)
T ss_pred -chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHH
Confidence 345556666777788888888888888877774332 4555566666777778888888888877764433 3333333
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhc
Q 005178 509 LLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNS 547 (710)
Q Consensus 509 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~ 547 (710)
.+..+...+++++|.+.++++.++-|+...+..++|..+
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~ 601 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQESSVFALLGKIY 601 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 455566677777787777777777777666655555443
No 48
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=7.2e-09 Score=102.68 Aligned_cols=433 Identities=14% Similarity=0.129 Sum_probs=316.5
Q ss_pred CcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 005178 185 METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPD-EVTYSAI 263 (710)
Q Consensus 185 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~l 263 (710)
.+...|--...-=-.++++..|..+|+..+.... .+...|--.+.+-.++..+..|..++++.+.. -|. ...|.-.
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY 147 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKY 147 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHH
Confidence 4556666666666778899999999999998653 36677888888888999999999999999875 333 3456666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 005178 264 LDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343 (710)
Q Consensus 264 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 343 (710)
+.+=-..|++..|.++|++-.+ +.|+...|++.|+.-.+...++.|..++++..- +.|++.+|--...--.+.|..
T Consensus 148 ~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~ 223 (677)
T KOG1915|consen 148 IYMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNV 223 (677)
T ss_pred HHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcH
Confidence 6666778999999999999887 589999999999999999999999999999987 479999999999988999999
Q ss_pred HHHHHHHHHHHHC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHH
Q 005178 344 GLARSLFDEMVES-GL-TPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMD--FILYNTLLNMCADIGLVEEAERL 419 (710)
Q Consensus 344 ~~A~~~~~~m~~~-g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~ 419 (710)
..|..+|...++. |- .-+...+.++...-.++..++.|..+|+..++. ++-+ ...|..+..---+-|+....++.
T Consensus 224 ~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~ 302 (677)
T KOG1915|consen 224 ALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDA 302 (677)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHH
Confidence 9999999988764 21 123445566666666778899999999999876 3333 45566666555566765444433
Q ss_pred --------HHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCH--HHHHHHHH--------HHHhc
Q 005178 420 --------FEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINV--MGCTCLIQ--------CLGKA 481 (710)
Q Consensus 420 --------~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~--------~~~~~ 481 (710)
++.+...+ +.|-.+|--.+..-...|+.+...++|++++.. ++|-. ..|...|- .-...
T Consensus 303 Iv~KRk~qYE~~v~~n--p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ 379 (677)
T KOG1915|consen 303 IVGKRKFQYEKEVSKN--PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEA 379 (677)
T ss_pred HhhhhhhHHHHHHHhC--CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555 678899999999999999999999999999875 44421 12222221 11357
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH-HHHHHHH----HHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHH
Q 005178 482 RRIDDLVRVFGVSIDRGVKPDD-RLCGCLL----SVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEE 556 (710)
Q Consensus 482 g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll----~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~ 556 (710)
.+.+.+.++|+..++ +.|.. .||.-+- ..-.++.+...|.+++..+.+.-|.+..|-..+--. ...+ ..+.
T Consensus 380 ed~ertr~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelE-lqL~-efDR 455 (677)
T KOG1915|consen 380 EDVERTRQVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELE-LQLR-EFDR 455 (677)
T ss_pred hhHHHHHHHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHH-HHHh-hHHH
Confidence 889999999999988 45543 3444333 334468889999999999999999887765443221 1112 3445
Q ss_pred HHHHHHh-ccCCCCh-hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcccccccccchhccccc-ChHHHHHHHHHHH
Q 005178 557 FRNVIKD-TEVDARR-PFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSL-SVGAAQTALEEWM 633 (710)
Q Consensus 557 a~~~~~~-~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~-~~G~~~~Al~~~~ 633 (710)
...++++ +...|.. .+|.-....-...|+.++|+.+|+.++.... +.. -...|...|..- +.|..+.|-.++.
T Consensus 456 cRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~---ldm-pellwkaYIdFEi~~~E~ekaR~LYe 531 (677)
T KOG1915|consen 456 CRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPA---LDM-PELLWKAYIDFEIEEGEFEKARALYE 531 (677)
T ss_pred HHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc---ccc-HHHHHHHhhhhhhhcchHHHHHHHHH
Confidence 5556655 4556654 3788888888899999999999999874432 222 235677665553 5677777777775
Q ss_pred HHH
Q 005178 634 WTL 636 (710)
Q Consensus 634 ~~~ 636 (710)
.-+
T Consensus 532 rlL 534 (677)
T KOG1915|consen 532 RLL 534 (677)
T ss_pred HHH
Confidence 533
No 49
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.49 E-value=2.9e-10 Score=107.34 Aligned_cols=269 Identities=14% Similarity=0.103 Sum_probs=177.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCCH
Q 005178 235 CNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP------IAFSVLGKMFGESGDY 308 (710)
Q Consensus 235 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~------~~~~~li~~~~~~g~~ 308 (710)
.++.++|+++|-+|.+.... +..+.-+|.+.|.+.|.++.|+++.+.+.++ ||. .....|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 46677777777777764322 4455566777777777788888777777764 442 2334566667777888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHH
Q 005178 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE----KTLTALIKIYGKARWAKDALEL 384 (710)
Q Consensus 309 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~ 384 (710)
|.|+.+|..+.+.| ..-......|+..|-...+|++|+++-+++...+-.+.. ..|.-|...+....+.+.|..+
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 88888888877644 223445667778888888888888888777766544332 2345555555566778888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 005178 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464 (710)
Q Consensus 385 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 464 (710)
+.+..+.+.+ .+..-..+.+.+...|+++.|.+.++.+.+.+. ..-..+...|..+|.+.|+.++...++.++.+...
T Consensus 203 l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~-~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~ 280 (389)
T COG2956 203 LKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNP-EYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT 280 (389)
T ss_pred HHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 8887776433 334444566777788888888888888887763 33455677788888888888888888888877433
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005178 465 AINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVS 514 (710)
Q Consensus 465 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 514 (710)
+...-..+...-....-.+.|..++.+-+. -+|+...+..++..-.
T Consensus 281 --g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~~l 326 (389)
T COG2956 281 --GADAELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDYHL 326 (389)
T ss_pred --CccHHHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHhhh
Confidence 333333343333444445566666555444 3678877777776544
No 50
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.48 E-value=4.1e-10 Score=109.73 Aligned_cols=295 Identities=12% Similarity=0.067 Sum_probs=202.9
Q ss_pred HHHHHHHH--ccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005178 191 NVTMKSLR--FGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268 (710)
Q Consensus 191 ~~li~~~~--~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 268 (710)
..+..++. -.|+|.+|+++..+-.+.+-. ....|..-..+.-+.|+.+.+-.++.+..+..-.++....-+......
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll 164 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLL 164 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 34444443 358888888888887776533 233444445577778888888888888887644556777777788888
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHHHcC
Q 005178 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV-------VYNTLLEAMGKAG 341 (710)
Q Consensus 269 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------~~~~li~~~~~~g 341 (710)
..|+++.|..-.+++.+.+ +.+.........+|.+.|++.....++..|.+.|.--+.. +|+.+++-....+
T Consensus 165 ~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~ 243 (400)
T COG3071 165 NRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDN 243 (400)
T ss_pred hCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccc
Confidence 8888888888888888775 5567778888888888888888888888888877654442 4565655555555
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005178 342 KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFE 421 (710)
Q Consensus 342 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 421 (710)
..+.-...++..... .+-+...-.+++.-+.++|+.++|.++..+..+++..+.... .-.+.+.++.+.-++..+
T Consensus 244 ~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~----~~~~l~~~d~~~l~k~~e 318 (400)
T COG3071 244 GSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR----LIPRLRPGDPEPLIKAAE 318 (400)
T ss_pred cchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH----HHhhcCCCCchHHHHHHH
Confidence 555544455554432 233444555667777778888888888887777766655211 223445666666666666
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005178 422 DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496 (710)
Q Consensus 422 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 496 (710)
...+.. +.++..+.+|...|.+.+.+.+|...|+..++ ..|+..+|+.+..+|.+.|+..+|.+++++.+.
T Consensus 319 ~~l~~h--~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 319 KWLKQH--PEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHhC--CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 655543 34556777777778888888888888876665 457777788788888888888777777777653
No 51
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.47 E-value=3.9e-10 Score=109.92 Aligned_cols=293 Identities=13% Similarity=0.076 Sum_probs=192.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005178 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384 (710)
Q Consensus 305 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 384 (710)
.|+|..|+++..+-.+.+-. ....|..-+.+..+.|+.+.+-.++.+.-+..-.++...+-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 46666666666655554422 22344444555555666666666666665542244445555555566666666666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCC-------HHHHHHHHHHHHhCCCHHHHHHHHH
Q 005178 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPD-------NYSYTAMLNIYGSGGNVDNAIELFE 457 (710)
Q Consensus 385 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~ 457 (710)
..++.+.+.. +........++|.+.|++.....++..+.+.+.. .+ ..+|..+++-....+..+.-...++
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l-~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLL-SDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCC-ChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 6666655444 4555666666666666666666666666666542 22 2456666666666666666566666
Q ss_pred HHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHH
Q 005178 458 EMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLV 537 (710)
Q Consensus 458 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 537 (710)
+.... .+-+...-.+++.-+.++|+.++|.++.++..+.+..|+. +..-.+.+-++.+.-++..++..+..|+++
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p 328 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDP 328 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCCh
Confidence 65432 3345666667777788888888888888888877776652 223345567777777888888888888888
Q ss_pred HHHHHHHhhcCCcccHHHHHHHHHHh-ccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCccc
Q 005178 538 AFLNLIEDNSTGFENIKEEFRNVIKD-TEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLH 606 (710)
Q Consensus 538 ~~~~~L~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 606 (710)
.....||+.+.+.+ .+.+|.++++. +...|+...|+-+.+++.+.|+.++|.++.++++..-..|+.+
T Consensus 329 ~L~~tLG~L~~k~~-~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~~~ 397 (400)
T COG3071 329 LLLSTLGRLALKNK-LWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPNLP 397 (400)
T ss_pred hHHHHHHHHHHHhh-HHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCc
Confidence 88888887766655 55556666654 6788888999999999999999999999999987665555543
No 52
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=1e-09 Score=109.11 Aligned_cols=376 Identities=12% Similarity=0.056 Sum_probs=252.6
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCc-HHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHH
Q 005178 164 LKFWQKSYFFFNWIKSQNLFPME-TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDN-ITYSTIITCAKRCNLFDEA 241 (710)
Q Consensus 164 l~~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A 241 (710)
-+.+++|++++.|++.. .|| +..|.....+|...|+|+++.+--.+.++. .|+- ..+.--.+++-..|++++|
T Consensus 128 ~kkY~eAIkyY~~AI~l---~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~lg~~~ea 202 (606)
T KOG0547|consen 128 NKKYDEAIKYYTQAIEL---CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQLGKFDEA 202 (606)
T ss_pred cccHHHHHHHHHHHHhc---CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhhccHHHH
Confidence 34699999999999875 566 888999999999999999999988888775 3442 3444445577777888777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH--------HHHHh-CC--CCCCHHHHHHHHHHHHh------
Q 005178 242 IEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY--------ERGVA-SG--WKPDPIAFSVLGKMFGE------ 304 (710)
Q Consensus 242 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~--------~~~~~-~g--~~~~~~~~~~li~~~~~------ 304 (710)
+.=.. ..+++.++....-.-.+.+++ ++-.+ .+ +-|+.....+....+..
T Consensus 203 l~D~t-------------v~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~ 269 (606)
T KOG0547|consen 203 LFDVT-------------VLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLF 269 (606)
T ss_pred HHhhh-------------HHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccc
Confidence 63221 112222221111111111221 11111 11 22333222222222110
Q ss_pred -------------------cC---CHHHHHHHHHHHHHC---CCCCC---------HHHHHHHHHHHHHcCCHHHHHHHH
Q 005178 305 -------------------SG---DYDGIRYVLQEMKSL---GVQPN---------LVVYNTLLEAMGKAGKPGLARSLF 350 (710)
Q Consensus 305 -------------------~g---~~~~A~~~~~~m~~~---g~~p~---------~~~~~~li~~~~~~g~~~~A~~~~ 350 (710)
.+ .+..|...+.+-... ....+ ..+...-..-+.-.|+.-.|..-|
T Consensus 270 ~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~ 349 (606)
T KOG0547|consen 270 DNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDF 349 (606)
T ss_pred cCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhH
Confidence 11 233333333222110 00111 111111122234468889999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 005178 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCK 430 (710)
Q Consensus 351 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 430 (710)
+..+.....++ ..|.-+..+|....+.++..+.|++..+.+.. |..+|..-.+++.-.+++++|..=|++.+... +
T Consensus 350 ~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~--p 425 (606)
T KOG0547|consen 350 DAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLD--P 425 (606)
T ss_pred HHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC--h
Confidence 99998753333 23777888899999999999999999987655 67778888888888999999999999999876 6
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHH-
Q 005178 431 PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRG-----VKPDDR- 504 (710)
Q Consensus 431 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~p~~~- 504 (710)
-+...|..+..+..+.++++++...|++.++. ++--..+|+-....+...++++.|++.|+..++.. +..+..
T Consensus 426 e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~p 504 (606)
T KOG0547|consen 426 ENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAP 504 (606)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchh
Confidence 77888888888888999999999999999875 44467899999999999999999999999988632 111222
Q ss_pred -HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHHHHhc
Q 005178 505 -LCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDT 564 (710)
Q Consensus 505 -~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~~~ 564 (710)
+.-+++..-. .+++..|.++++++.+++|.-..+...|+....+.| ..++|.++|++.
T Consensus 505 lV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~-~i~eAielFEks 563 (606)
T KOG0547|consen 505 LVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRG-KIDEAIELFEKS 563 (606)
T ss_pred hhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 2223332222 488999999999999999999999888887766667 778888888763
No 53
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=9.3e-10 Score=111.54 Aligned_cols=285 Identities=12% Similarity=0.027 Sum_probs=231.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 005178 253 LMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNT 332 (710)
Q Consensus 253 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 332 (710)
..-+......-.+-|...+++.+..++++.+.+.. ++....+..-|.++...|+..+-..+=.++.+.- +-...+|-+
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~a 317 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFA 317 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhh
Confidence 34466666677777888999999999999998874 6777778888889999999888888888888752 446679999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHc
Q 005178 333 LLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN--KWPMDFILYNTLLNMCADI 410 (710)
Q Consensus 333 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~ 410 (710)
+.--|...|+..+|.+.|.+....+ +.=...|-.+...|+-.|.-|+|+..|...-+. |.. -+..| +.--|.+.
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~LY--lgmey~~t 393 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPSLY--LGMEYMRT 393 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chHHH--HHHHHHHh
Confidence 9999999999999999999887542 112457888999999999999999988877653 221 12223 34457789
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCC----cCHHHHHHHHHHHHhcCCH
Q 005178 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL--GVA----INVMGCTCLIQCLGKARRI 484 (710)
Q Consensus 411 g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~----p~~~~~~~li~~~~~~g~~ 484 (710)
++++.|.++|.+..... |.|+...+-+.-.....+.+.+|..+|+..... .+. --..+++.|..+|.+.+++
T Consensus 394 ~n~kLAe~Ff~~A~ai~--P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~ 471 (611)
T KOG1173|consen 394 NNLKLAEKFFKQALAIA--PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY 471 (611)
T ss_pred ccHHHHHHHHHHHHhcC--CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence 99999999999998765 789999999999888999999999999988731 011 1345689999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhh
Q 005178 485 DDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDN 546 (710)
Q Consensus 485 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 546 (710)
++|+..|++.+....+ |..++.++.-.|...|+++.|+..|.+..-++|++.....+|+.+
T Consensus 472 ~eAI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 472 EEAIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 9999999999976443 778999999999999999999999999999999998888888753
No 54
>PRK12370 invasion protein regulator; Provisional
Probab=99.38 E-value=7.4e-10 Score=121.76 Aligned_cols=246 Identities=13% Similarity=-0.026 Sum_probs=170.2
Q ss_pred CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH---------hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 005178 342 KPGLARSLFDEMVESGLTPD-EKTLTALIKIYG---------KARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411 (710)
Q Consensus 342 ~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~---------~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 411 (710)
++++|..+|++..+. .|+ ...|..+..+|. ..+++++|...+++..+.+.. +...+..+...+...|
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcc
Confidence 356777777777765 333 444544444433 224478899999988887544 6777888888888899
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005178 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491 (710)
Q Consensus 412 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 491 (710)
++++|+..|++..+.+ +.+...+..+...|...|++++|...++++.+.+.. +...+..++..+...|++++|+..+
T Consensus 353 ~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 353 EYIVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred CHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHH
Confidence 9999999999988876 567778888888999999999999999998885433 2223333444566788899999999
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHH-HHHHHHHHhccCCCC
Q 005178 492 GVSIDRGVKP-DDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIK-EEFRNVIKDTEVDAR 569 (710)
Q Consensus 492 ~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~-~~a~~~~~~~~~~~~ 569 (710)
+++.... .| +...+..+..++...|+.++|...++++....|+.......++..+...++.. .....+++.....+.
T Consensus 430 ~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~a~~~l~~ll~~~~~~~~ 508 (553)
T PRK12370 430 DELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSERALPTIREFLESEQRIDN 508 (553)
T ss_pred HHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHHHHHHHHHHHHHHhhHhhc
Confidence 8887643 23 34456667778888999999999998888888888877777776655444321 123334444444554
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005178 570 RPFCNCLIDICRNRNLNERAHELLYLGT 597 (710)
Q Consensus 570 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 597 (710)
.+.+.. ..|.-+|+.+.+..+ +++.
T Consensus 509 ~~~~~~--~~~~~~g~~~~~~~~-~~~~ 533 (553)
T PRK12370 509 NPGLLP--LVLVAHGEAIAEKMW-NKFK 533 (553)
T ss_pred CchHHH--HHHHHHhhhHHHHHH-HHhh
Confidence 444433 445667887777665 6544
No 55
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.36 E-value=2.4e-07 Score=95.50 Aligned_cols=268 Identities=13% Similarity=0.141 Sum_probs=142.7
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 005178 155 ENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKR 234 (710)
Q Consensus 155 ~~~~~~l~~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~ 234 (710)
.+.+.++...++....+..|+.+.....+.....+|...+......|-++.+..+|++.++- ++..-+.-|..++.
T Consensus 106 l~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~ 181 (835)
T KOG2047|consen 106 LDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAK 181 (835)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHh
Confidence 34455555555666666777666555445555566777777777777777777777766653 33335555555666
Q ss_pred cCCHHHHHHHHHHHHHc----------------------------------------CC--CCC--HHHHHHHHHHHHHc
Q 005178 235 CNLFDEAIEWFERMYKT----------------------------------------GL--MPD--EVTYSAILDVYAKS 270 (710)
Q Consensus 235 ~g~~~~A~~~~~~m~~~----------------------------------------g~--~~~--~~~~~~li~~~~~~ 270 (710)
.+++++|.+.+...+.. |+ -+| ...|.+|.+.|.+.
T Consensus 182 ~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~ 261 (835)
T KOG2047|consen 182 SDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRS 261 (835)
T ss_pred ccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHh
Confidence 66666665555544321 00 111 13477888888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHH------------------------------------------HHHHHH-------
Q 005178 271 GKVEEVLSLYERGVASGWKPDPIAF------------------------------------------SVLGKM------- 301 (710)
Q Consensus 271 g~~~~A~~~~~~~~~~g~~~~~~~~------------------------------------------~~li~~------- 301 (710)
|.+++|..+|++.+..- .+..-| ..|++.
T Consensus 262 g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNs 339 (835)
T KOG2047|consen 262 GLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNS 339 (835)
T ss_pred hhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHH
Confidence 88888888887755321 010001 111100
Q ss_pred -H----------------HhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 005178 302 -F----------------GESGDYDGIRYVLQEMKSLG-----VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359 (710)
Q Consensus 302 -~----------------~~~g~~~~A~~~~~~m~~~g-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 359 (710)
+ ...|+..+-..+|.+..+.- +-.-...|..+...|-..|+++.|..+|++..+...+
T Consensus 340 VlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~ 419 (835)
T KOG2047|consen 340 VLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK 419 (835)
T ss_pred HHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc
Confidence 0 11233444444555544320 0111235666677777777777777777776654322
Q ss_pred CC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----------CCCC------CHHHHHHHHHHHHHcCCHHHHHHH
Q 005178 360 PD---EKTLTALIKIYGKARWAKDALELWERMREN-----------KWPM------DFILYNTLLNMCADIGLVEEAERL 419 (710)
Q Consensus 360 p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----------~~~~------~~~~~~~li~~~~~~g~~~~A~~~ 419 (710)
-- ..+|......-.+..+++.|+++.+..... +.++ +...|...++..-..|-++....+
T Consensus 420 ~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~v 499 (835)
T KOG2047|consen 420 TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAV 499 (835)
T ss_pred chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHH
Confidence 11 345555556666666677776666654321 1111 122344444444555666666666
Q ss_pred HHHHHhCCC
Q 005178 420 FEDMKLSDY 428 (710)
Q Consensus 420 ~~~~~~~~~ 428 (710)
++.+.+..+
T Consensus 500 YdriidLri 508 (835)
T KOG2047|consen 500 YDRIIDLRI 508 (835)
T ss_pred HHHHHHHhc
Confidence 666655543
No 56
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.35 E-value=1.1e-09 Score=106.72 Aligned_cols=196 Identities=13% Similarity=0.067 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005178 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371 (710)
Q Consensus 292 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 371 (710)
...+..+...|...|++++|...+++..+.. +.+...+..+...+...|++++|.+.|++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3444455555555555555555555554432 1233444445555555555555555555554432 2233344444444
Q ss_pred HHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHH
Q 005178 372 YGKARWAKDALELWERMRENKW-PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450 (710)
Q Consensus 372 ~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 450 (710)
+...|++++|.+.|++..+... ......+..+...+...|++++|...+.+..+.. +.+...+..+...+...|+++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID--PQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCChHHHHHHHHHHHHcCCHH
Confidence 4444555555555544443211 1112233333444444444444444444444332 223333444444444444444
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005178 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFG 492 (710)
Q Consensus 451 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 492 (710)
+|...++++.+. ...+...+..++..+...|+.++|..+.+
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 227 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGA 227 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 444444444332 11223333333333334444444444333
No 57
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=9.7e-09 Score=104.33 Aligned_cols=445 Identities=14% Similarity=0.073 Sum_probs=264.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 005178 166 FWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245 (710)
Q Consensus 166 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 245 (710)
++..|+-+-++.-.. ..|+..---+..+|.-.|+++.|..+...-.-. ..|..+......++.+..++++|..++
T Consensus 31 ~y~~a~f~adkV~~l---~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l~~lk~~~~al~vl 105 (611)
T KOG1173|consen 31 RYKTALFWADKVAGL---TNDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCLVKLKEWDQALLVL 105 (611)
T ss_pred hhhHHHHHHHHHHhc---cCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466666655555433 344444455778888888888888777654332 237777777777888888888888888
Q ss_pred HHHHHc--C-----------CCCCHHH----HHHH-------HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005178 246 ERMYKT--G-----------LMPDEVT----YSAI-------LDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKM 301 (710)
Q Consensus 246 ~~m~~~--g-----------~~~~~~~----~~~l-------i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 301 (710)
...... + +.+|..- -+.- ...|....+.++|...|.+.+. .|+..|..+...
T Consensus 106 ~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~----~D~~c~Ea~~~l 181 (611)
T KOG1173|consen 106 GRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALL----ADAKCFEAFEKL 181 (611)
T ss_pred cccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHh----cchhhHHHHHHH
Confidence 722110 0 0111110 0111 1224444556777777776664 344444433322
Q ss_pred HHhcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 005178 302 FGESGDYDGIRYVLQEMKSLGV----QPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARW 377 (710)
Q Consensus 302 ~~~~g~~~~A~~~~~~m~~~g~----~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 377 (710)
-.. ..-.+.+.++.+..... .-+......+.....-...-+.....-.+..-.+...+......-.+-|...++
T Consensus 182 vs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~ 259 (611)
T KOG1173|consen 182 VSA--HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCR 259 (611)
T ss_pred HHH--HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcCh
Confidence 211 11112122222221100 001111111111110000000000000001111234455556666677778889
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 005178 378 AKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE 457 (710)
Q Consensus 378 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 457 (710)
+.+..++++.+.+.. ++....+..-|.++...|+..+-..+=.++.+.. |....+|-++.--|...|++++|.+.|.
T Consensus 260 f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y--P~~a~sW~aVg~YYl~i~k~seARry~S 336 (611)
T KOG1173|consen 260 FKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY--PSKALSWFAVGCYYLMIGKYSEARRYFS 336 (611)
T ss_pred HHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC--CCCCcchhhHHHHHHHhcCcHHHHHHHH
Confidence 999999999888763 3355555556668888888888777777887765 6677889999988888899999999998
Q ss_pred HHHHcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Q 005178 458 EMSELGVAIN-VMGCTCLIQCLGKARRIDDLVRVFGVSIDR--GVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANP 534 (710)
Q Consensus 458 ~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 534 (710)
+.... .|. ...|-.+...|+-.|..|.|+..+..+-+. |.. .-+--+..-|.+.++.+-|.++|.++..+.|
T Consensus 337 Kat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h---lP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P 411 (611)
T KOG1173|consen 337 KATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH---LPSLYLGMEYMRTNNLKLAEKFFKQALAIAP 411 (611)
T ss_pred HHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc---chHHHHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 87663 233 467888889999999999999888877643 222 1122344557778888999999999999999
Q ss_pred cHHHHHHHHHhhcCCcccHHHHHHHHHHhc-------cCC-C-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcc
Q 005178 535 KLVAFLNLIEDNSTGFENIKEEFRNVIKDT-------EVD-A-RRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGL 605 (710)
Q Consensus 535 ~~~~~~~~L~~~~~~~~~~~~~a~~~~~~~-------~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 605 (710)
.++-+.+-+|......+ ...+|..+++.. ..+ + -.++++.|+.+|++++++++|+..+++++..
T Consensus 412 ~Dplv~~Elgvvay~~~-~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l------ 484 (611)
T KOG1173|consen 412 SDPLVLHELGVVAYTYE-EYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL------ 484 (611)
T ss_pred CcchhhhhhhheeehHh-hhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc------
Confidence 99888888876554434 444555544431 111 1 3456888999999999999999999987633
Q ss_pred cccccccchhcccccC-hHHHHHHHHHHHHHH
Q 005178 606 HNKTLDEWSLDVRSLS-VGAAQTALEEWMWTL 636 (710)
Q Consensus 606 ~~~~~~~w~~~~~~~~-~G~~~~Al~~~~~~~ 636 (710)
.++++..+..+.-.+. .|+.+.|++.+-+.+
T Consensus 485 ~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 485 SPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred CCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 2223333333322222 488888888776644
No 58
>PRK12370 invasion protein regulator; Provisional
Probab=99.34 E-value=9e-10 Score=121.13 Aligned_cols=214 Identities=14% Similarity=0.120 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 005178 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAK---------SGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY 308 (710)
Q Consensus 238 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 308 (710)
+++|+++|++..+.... +...|..+..+|.. .+++++|...++++++.. +-+...+..+...+...|++
T Consensus 277 ~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 277 LQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCH
Confidence 45666666666655322 33444444433332 123455555555555543 23444555555555555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005178 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD-EKTLTALIKIYGKARWAKDALELWER 387 (710)
Q Consensus 309 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~ 387 (710)
++|...|++..+.+ +.+...+..+...+...|++++|...+++..+.. |+ ...+..++..+...|++++|+..+++
T Consensus 355 ~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 355 IVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 55555555555542 1233345555555555555555555555555442 22 11222223333444555555555555
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005178 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460 (710)
Q Consensus 388 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 460 (710)
+.+...+-+...+..+..++...|++++|...+.++.... +.+....+.+...|...| ++|...++.+.
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll 500 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE--ITGLIAVNLLYAEYCQNS--ERALPTIREFL 500 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc--chhHHHHHHHHHHHhccH--HHHHHHHHHHH
Confidence 5443212123334444445555555555555555544322 122233333333444444 24444444433
No 59
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.32 E-value=1.5e-10 Score=109.12 Aligned_cols=205 Identities=14% Similarity=0.129 Sum_probs=104.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 005178 334 LEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413 (710)
Q Consensus 334 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 413 (710)
..+|.+.|.+.+|.+.|+.-++. .|-..||..|-++|.+..+.+.|+.+|.+-.+. ++-|+....-+...+...++.
T Consensus 230 gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~~~ 306 (478)
T KOG1129|consen 230 GKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAMEQQ 306 (478)
T ss_pred HHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHHhH
Confidence 33344444444444444433333 233334444444444444444444444444443 222333333344444445555
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005178 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGV 493 (710)
Q Consensus 414 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 493 (710)
++|.++++...+.. +.++.....+...|.-.++.+-|+.+|+++++.|+. +...|+.+.-+|.-.+++|-++..|++
T Consensus 307 ~~a~~lYk~vlk~~--~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 307 EDALQLYKLVLKLH--PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred HHHHHHHHHHHhcC--CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 55555555555544 345555555555566666666666666666666654 556666666666666666666666666
Q ss_pred HHHCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHH
Q 005178 494 SIDRGVKPDD--RLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIE 544 (710)
Q Consensus 494 m~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~ 544 (710)
.+..--.|+. .+|..+.......|++.-|.+.|+-....+|++...++.|+
T Consensus 384 Alstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLa 436 (478)
T KOG1129|consen 384 ALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLA 436 (478)
T ss_pred HHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHH
Confidence 5543333332 24555555555566666666666555555555544444443
No 60
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.31 E-value=2.2e-09 Score=104.54 Aligned_cols=197 Identities=16% Similarity=0.086 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005178 258 VTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337 (710)
Q Consensus 258 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 337 (710)
..+..+...|...|++++|...++++.+.. +.+...+..+...|...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 344444455555555555555555544432 2233444444455555555555555555544432 12333444444455
Q ss_pred HHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 005178 338 GKAGKPGLARSLFDEMVESGL-TPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEA 416 (710)
Q Consensus 338 ~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 416 (710)
...|++++|.+.|++...... ......+..+...+...|++++|...+.+..+.... +...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHHH
Confidence 555555555555555443211 112223334444445555555555555554443211 333444444555555555555
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 005178 417 ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459 (710)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 459 (710)
...+++..+.. +.+...+..++..+...|+.++|..+.+.+
T Consensus 189 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 189 RAYLERYQQTY--NQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 55555544432 233444444444444555555555544444
No 61
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.27 E-value=5e-07 Score=93.24 Aligned_cols=431 Identities=12% Similarity=0.102 Sum_probs=284.3
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005178 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSN-EIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266 (710)
Q Consensus 188 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 266 (710)
..|-..+..+.++|++......|+..+.. -+......|...+......+-++-++.+|++.++. +...-+-.|..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHH
Confidence 56888888999999999999999998765 22234467999999999999999999999999875 55557788888
Q ss_pred HHHcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCCHHHH---HHHHHHHHHCCCCCCH--HHHHHHHH
Q 005178 267 YAKSGKVEEVLSLYERGVASG------WKPDPIAFSVLGKMFGESGDYDGI---RYVLQEMKSLGVQPNL--VVYNTLLE 335 (710)
Q Consensus 267 ~~~~g~~~~A~~~~~~~~~~g------~~~~~~~~~~li~~~~~~g~~~~A---~~~~~~m~~~g~~p~~--~~~~~li~ 335 (710)
+++.+++++|-+.+...+... .+.+...|.-+-+..++.-+.-.. ..+++.+... -+|. ..|..|.+
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLAD 256 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHH
Confidence 999999999999998876431 245667788777777766554333 3344444332 3444 37899999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----------------------CHHHHHHHHHHHHhCCC
Q 005178 336 AMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR----------------------WAKDALELWERMRENKW 393 (710)
Q Consensus 336 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----------------------~~~~A~~~~~~m~~~~~ 393 (710)
-|.+.|+++.|..+|++.+.. ..+..-|+.+.++|++-. +++-.+.-|+.+.+.+.
T Consensus 257 YYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~ 334 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRP 334 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccc
Confidence 999999999999999998875 334445555555554321 12233334444443211
Q ss_pred -----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC----CCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 005178 394 -----------PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY----CKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458 (710)
Q Consensus 394 -----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 458 (710)
+-++..|..-+. ...|+..+-...|.+..+.-. .-.-...|..+...|-..|+++.|..+|++
T Consensus 335 ~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifek 412 (835)
T KOG2047|consen 335 LLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEK 412 (835)
T ss_pred hHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 112223332222 235667777777877765421 001235688999999999999999999999
Q ss_pred HHHcCCCcC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----------CC-------CHHHHHHHHHHHHhcCC
Q 005178 459 MSELGVAIN---VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGV----------KP-------DDRLCGCLLSVVSLCET 518 (710)
Q Consensus 459 m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----------~p-------~~~~~~~ll~~~~~~g~ 518 (710)
..+...+-- ..+|......-.++.+++.|+++++......- .| +..+|..++..-...|-
T Consensus 413 a~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gt 492 (835)
T KOG2047|consen 413 ATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGT 492 (835)
T ss_pred hhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 988544322 45677777777789999999999988763211 11 23466667777777899
Q ss_pred hHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHHHHh-ccC--CCChh-hHHHHHHHHH-hCC--CHHHHHH
Q 005178 519 SEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKD-TEV--DARRP-FCNCLIDICR-NRN--LNERAHE 591 (710)
Q Consensus 519 ~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~~-~~~--~~~~~-~~~~l~~~~~-~~g--~~~~A~~ 591 (710)
++....+|+++..+.--.+.++-.++-.+.... ..+++.+.+++ ++. -|... +|++.+--+. +.| ..+.|+.
T Consensus 493 festk~vYdriidLriaTPqii~NyAmfLEeh~-yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRd 571 (835)
T KOG2047|consen 493 FESTKAVYDRIIDLRIATPQIIINYAMFLEEHK-YFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARD 571 (835)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhH-HHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 999999999998876555555544443322222 55666555544 443 23332 8888765443 333 5899999
Q ss_pred HHHHHHHcCCCCcccccccccchhccccc--ChHHHHHHHHHHHH
Q 005178 592 LLYLGTLYGLYPGLHNKTLDEWSLDVRSL--SVGAAQTALEEWMW 634 (710)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~--~~G~~~~Al~~~~~ 634 (710)
+|+++++ |..|. +++. .+-+ -..+ ..|.+..|+..+.+
T Consensus 572 LFEqaL~-~Cpp~-~aKt--iyLl-YA~lEEe~GLar~amsiyer 611 (835)
T KOG2047|consen 572 LFEQALD-GCPPE-HAKT--IYLL-YAKLEEEHGLARHAMSIYER 611 (835)
T ss_pred HHHHHHh-cCCHH-HHHH--HHHH-HHHHHHHhhHHHHHHHHHHH
Confidence 9999997 55543 3221 1111 1111 23666666666554
No 62
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.26 E-value=3.8e-07 Score=96.31 Aligned_cols=207 Identities=15% Similarity=0.094 Sum_probs=145.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHH
Q 005178 218 IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP-DPIAFS 296 (710)
Q Consensus 218 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~-~~~~~~ 296 (710)
+.-|...|..+.-++..+|+++.+.+.|++....-+. ....|+.+...|.-.|.-..|..+++......-.| |...+-
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 4457788888888889999999999999988765333 67788999999999999999999988776543223 344444
Q ss_pred HHHHHHH-hcCCHHHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHCC-CC
Q 005178 297 VLGKMFG-ESGDYDGIRYVLQEMKSL--GV--QPNLVVYNTLLEAMGKA-----------GKPGLARSLFDEMVESG-LT 359 (710)
Q Consensus 297 ~li~~~~-~~g~~~~A~~~~~~m~~~--g~--~p~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g-~~ 359 (710)
..-..|. +.+.+++++.+-.+.... |. ......|..+.-+|... ....++++.+++..+.+ -.
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3334443 456777777776666651 11 12334455555555432 12356777788877654 23
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 005178 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427 (710)
Q Consensus 360 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 427 (710)
|+...| +.--|+..++++.|.+..++..+.+..-+...|..|.-.+...+++.+|+.+.+...+..
T Consensus 478 p~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~ 543 (799)
T KOG4162|consen 478 PLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF 543 (799)
T ss_pred chHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh
Confidence 444333 444567788999999999999988767788899999888999999999999998877653
No 63
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.26 E-value=3.6e-10 Score=119.75 Aligned_cols=246 Identities=15% Similarity=0.085 Sum_probs=134.2
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 005178 212 EMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291 (710)
Q Consensus 212 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~ 291 (710)
.+...|+.|+.+||..+|.-|+..|+.+.|- +|.-|.-.....+...++.++.+..+.++.+.+. .|.
T Consensus 15 ~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~ 82 (1088)
T KOG4318|consen 15 LHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPL 82 (1088)
T ss_pred HHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCc
Confidence 3444444444444444444444444444444 4444443333334444444444444444443332 244
Q ss_pred HHHHHHHHHHHHhcCCH-----------------------HHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005178 292 PIAFSVLGKMFGESGDY-----------------------DGIRYVLQEMKS-LGVQPNLVVYNTLLEAMGKAGKPGLAR 347 (710)
Q Consensus 292 ~~~~~~li~~~~~~g~~-----------------------~~A~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~A~ 347 (710)
..+|..|..+|...||+ ..-..++..+.- .+.-||..+ .+.-..-.|-++.++
T Consensus 83 aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~eglwaqll 159 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVLEGLWAQLL 159 (1088)
T ss_pred hhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHHHHHHHHHH
Confidence 44444444444444443 333333322211 112233322 333344556667777
Q ss_pred HHHHHHHHCCC-CCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005178 348 SLFDEMVESGL-TPDEKTLTALIKIYGKAR-WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425 (710)
Q Consensus 348 ~~~~~m~~~g~-~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 425 (710)
+++..+..... .|..+ ++.-+.... .+++-..+.+...+ .|+..+|.++++.-...|+++.|..++.+|++
T Consensus 160 kll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke 232 (1088)
T KOG4318|consen 160 KLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKE 232 (1088)
T ss_pred HHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 76666543211 11111 233333222 23333333333332 47888888888888888888888888888888
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC
Q 005178 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483 (710)
Q Consensus 426 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 483 (710)
.|. +.+..-|-.|+-+ .++..-+..++.-|.+.|+.|+..|+...+..+...|.
T Consensus 233 ~gf-pir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 233 KGF-PIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cCC-Ccccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 885 6666666666654 77788888888888888888888888888777777555
No 64
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.25 E-value=2.6e-08 Score=105.82 Aligned_cols=291 Identities=16% Similarity=0.132 Sum_probs=178.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhc----
Q 005178 231 CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAF-SVLGKMFGES---- 305 (710)
Q Consensus 231 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~-~~li~~~~~~---- 305 (710)
.+...|++++|++.++.-... +.............+.+.|+.++|..+|..+++.+ |+...| ..+..+..-.
T Consensus 13 il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccc
Confidence 345566666666666554332 22234445555666666666666666666666653 443333 3333333111
Q ss_pred -CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005178 306 -GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP-GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALE 383 (710)
Q Consensus 306 -g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 383 (710)
...+....+|+++...- |.......+.-.+.....+ ..+..++..+...|+++ +|+.|-..|......+....
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHH
Confidence 24555666666665531 3222222221111111122 23444555566666543 45555555554444444444
Q ss_pred HHHHHHhC--------------CCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCC
Q 005178 384 LWERMREN--------------KWPMDF--ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447 (710)
Q Consensus 384 ~~~~m~~~--------------~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 447 (710)
++...... .-+|.. .++.-+.+.|-..|++++|.+++++.++.. +..+..|..-...|-..|
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh~G 242 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHCC
Confidence 44444321 123344 344666778888999999999999998876 455778888899999999
Q ss_pred CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH------HH--HHHHHHHHhcCCh
Q 005178 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR------LC--GCLLSVVSLCETS 519 (710)
Q Consensus 448 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------~~--~~ll~~~~~~g~~ 519 (710)
++.+|...++.....+.. |...-+..+..+.++|++++|.+++......+..|-.. .| .....+|.+.|++
T Consensus 243 ~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~ 321 (517)
T PF12569_consen 243 DLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDY 321 (517)
T ss_pred CHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhH
Confidence 999999999999887655 77777788888899999999999998887665444221 22 3456688899999
Q ss_pred HHHHHHHHHHHHh
Q 005178 520 EDVGKVITCLQQA 532 (710)
Q Consensus 520 ~~a~~~~~~~~~~ 532 (710)
..|.+.|..+.++
T Consensus 322 ~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 322 GLALKRFHAVLKH 334 (517)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988776543
No 65
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=6.2e-07 Score=87.85 Aligned_cols=301 Identities=13% Similarity=0.040 Sum_probs=211.5
Q ss_pred CCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHH
Q 005178 290 PDPIAFSVLGKMFG--ESGDYDGIRYVLQEMKSL-GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE-KTL 365 (710)
Q Consensus 290 ~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~ 365 (710)
++.......+.+++ -.++...|...+-.+... -++-|......+...+...|+.++|+..|++.... .|+. ...
T Consensus 192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~M 269 (564)
T KOG1174|consen 192 DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAM 269 (564)
T ss_pred CCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhH
Confidence 33333334444443 344444555444444332 24557778888999999999999999999988754 3432 222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Q 005178 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445 (710)
Q Consensus 366 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 445 (710)
....-.+.+.|+.+....+...+.... .-....|..-+.......+++.|+.+-++.++.+ +.+...|..-...+..
T Consensus 270 D~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~--~r~~~alilKG~lL~~ 346 (564)
T KOG1174|consen 270 DLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE--PRNHEALILKGRLLIA 346 (564)
T ss_pred HHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC--cccchHHHhccHHHHh
Confidence 233334567888888888887776542 1133334444444556788999999999988876 5777888877888899
Q ss_pred CCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHH--HhcCChHHH
Q 005178 446 GGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL-SVV--SLCETSEDV 522 (710)
Q Consensus 446 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll-~~~--~~~g~~~~a 522 (710)
.|+.++|.-.|+..+.... -+...|..|+.+|...|++.+|.-.-+..... +.-+..+...+. .+| .-.++ +.|
T Consensus 347 ~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~r-EKA 423 (564)
T KOG1174|consen 347 LERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMR-EKA 423 (564)
T ss_pred ccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhH-HHH
Confidence 9999999999999877422 36889999999999999999998887766542 222444444332 222 23444 889
Q ss_pred HHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHHHHh-ccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 005178 523 GKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKD-TEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLY 599 (710)
Q Consensus 523 ~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 599 (710)
.+++++..+++|++..++..++......| ..+.+..++++ +...||....+.|++.+.-.+.+.+|...|..++..
T Consensus 424 Kkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg-~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 424 KKFAEKSLKINPIYTPAVNLIAELCQVEG-PTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHhhhccCCccHHHHHHHHHHHHhhC-ccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 99999999999999988888876544434 55666666655 677888888999999999999999999999987744
No 66
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.23 E-value=7.7e-08 Score=92.07 Aligned_cols=406 Identities=12% Similarity=0.083 Sum_probs=245.4
Q ss_pred HHhccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 005178 161 LNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDE 240 (710)
Q Consensus 161 l~~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 240 (710)
.-.++++++|+..+..+.... .++...+-.+.-.+.-.|.+.+|..+-....+ +.-.-..++....+.|+-++
T Consensus 67 ~fhLgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~ 139 (557)
T KOG3785|consen 67 YFHLGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKR 139 (557)
T ss_pred HHhhccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHH
Confidence 445678888888888876643 45566666666666777888888877654432 33334445556667777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHH
Q 005178 241 AIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG-KMFGESGDYDGIRYVLQEMK 319 (710)
Q Consensus 241 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~m~ 319 (710)
-..+...+.. ...---+|.......-.+.+|+++|.+++.. .|+-...|..+ -+|.+..-++-+.++++-..
T Consensus 140 ~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL 212 (557)
T KOG3785|consen 140 ILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYL 212 (557)
T ss_pred HHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 7766665543 2233344555555556788899999888765 35555555544 35667777787888877776
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCC
Q 005178 320 SLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA-----RWAKDALELWERMRENKWP 394 (710)
Q Consensus 320 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~ 394 (710)
+. ++-++...|..+....+.=+-..|..-..++.+.+-.. | -.+.-.++. +.-+.|++++--+.+.
T Consensus 213 ~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~--- 283 (557)
T KOG3785|consen 213 RQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--- 283 (557)
T ss_pred Hh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh---
Confidence 64 23344455555554444322233333344444332111 1 122333333 2446677776666543
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHcCCCcC
Q 005178 395 MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG-------NVDNAIELFEEMSELGVAIN 467 (710)
Q Consensus 395 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~~~~p~ 467 (710)
=+..--.|+--|.+.+++.+|..+.+++. +.++.-|..-.-.++..| .+.-|.+.|+-.-+.+..-|
T Consensus 284 -IPEARlNL~iYyL~q~dVqeA~~L~Kdl~-----PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecD 357 (557)
T KOG3785|consen 284 -IPEARLNLIIYYLNQNDVQEAISLCKDLD-----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECD 357 (557)
T ss_pred -ChHhhhhheeeecccccHHHHHHHHhhcC-----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccc
Confidence 12233345556788899999988877764 344444433333333333 34456666655444433322
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhC-CcHHHHHHHHHh
Q 005178 468 -VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN-PKLVAFLNLIED 545 (710)
Q Consensus 468 -~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~L~~ 545 (710)
+..--++..++.-..++|+.+.+++.....=.. |...-..+..++...|++.+|+++|-.+.+.+ .+......+|++
T Consensus 358 TIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~N-dD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LAr 436 (557)
T KOG3785|consen 358 TIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTN-DDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLAR 436 (557)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHH
Confidence 223445556666677788888888887665333 43434457888888999999999888776655 344556688888
Q ss_pred hcCCcccHHHHHHHHHHhccCCCChh-hHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005178 546 NSTGFENIKEEFRNVIKDTEVDARRP-FCNCLIDICRNRNLNERAHELLYLGT 597 (710)
Q Consensus 546 ~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~ 597 (710)
|+...+ ..+-|.+++-++....+.. ........|.+.+.+=-|-+.|+...
T Consensus 437 Cyi~nk-kP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE 488 (557)
T KOG3785|consen 437 CYIRNK-KPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELE 488 (557)
T ss_pred HHHhcC-CchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 887665 6677888777765555544 33445577999999887777777654
No 67
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.23 E-value=4.5e-07 Score=95.78 Aligned_cols=410 Identities=11% Similarity=0.035 Sum_probs=269.2
Q ss_pred CCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHH
Q 005178 183 FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMP-DEVTYS 261 (710)
Q Consensus 183 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~ 261 (710)
+..|..+|..+.-++..+|+++.+.+.|++....- --....|+.+-.+|...|.-..|+.+++.-......| |...+-
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 56788999999999999999999999999987642 2356789999999999999999999998766543234 344444
Q ss_pred HHHHHHHH-cCCHHHHHHHHHHHHhC--C--CCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCCCC
Q 005178 262 AILDVYAK-SGKVEEVLSLYERGVAS--G--WKPDPIAFSVLGKMFGES-----------GDYDGIRYVLQEMKSLGVQP 325 (710)
Q Consensus 262 ~li~~~~~-~g~~~~A~~~~~~~~~~--g--~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g~~p 325 (710)
..-..|.+ .+.+++++.+-.+++.. + -......|..+.-+|... ....++++.+++..+.+..
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~- 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT- 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-
Confidence 44444443 56778887777776652 1 123345566666565432 2245788888888875422
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005178 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405 (710)
Q Consensus 326 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 405 (710)
|..+...+.--|+..++++.|.+..++..+.+-..+...|..|.-.+.-.+++.+|+.+.+...+.- .-|......-++
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIH 555 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhh
Confidence 3333333445677789999999999999988657788899988888899999999999998776531 111111111122
Q ss_pred HHHHcCCHHHHHHHHHHHHhCC---------------------------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 005178 406 MCADIGLVEEAERLFEDMKLSD---------------------------YCKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458 (710)
Q Consensus 406 ~~~~~g~~~~A~~~~~~~~~~~---------------------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 458 (710)
.-...++.++|......+...- .......++..+....... ...+..-..
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~--~~~~~se~~- 632 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQ--LKSAGSELK- 632 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhh--hhhcccccc-
Confidence 2223445555444433322110 0001112222222111110 000000000
Q ss_pred HHHcCC--CcC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005178 459 MSELGV--AIN------VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQ 530 (710)
Q Consensus 459 m~~~~~--~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 530 (710)
+....+ .|+ ...|......+.+.+..++|.-.+.+..... .-....|......+...|.+++|.+.|..+.
T Consensus 633 Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al 711 (799)
T KOG4162|consen 633 LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVAL 711 (799)
T ss_pred cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Confidence 111111 122 3457777888999999999998888876532 2244567777778889999999999999999
Q ss_pred HhCCcHHHHHHHHHhhcCCcccHHHH-HHHHH-HhccCCCChh-hHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 005178 531 QANPKLVAFLNLIEDNSTGFENIKEE-FRNVI-KDTEVDARRP-FCNCLIDICRNRNLNERAHELLYLGTLY 599 (710)
Q Consensus 531 ~~~p~~~~~~~~L~~~~~~~~~~~~~-a~~~~-~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 599 (710)
.++|++...+..|+.++...|+..-. ...++ +....+|+.. .|-.|+.++.+.|+.++|.+-|..+.+.
T Consensus 712 ~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 712 ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 99999999999998887766633222 22244 4467788655 9999999999999999999999987644
No 68
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=2.7e-07 Score=90.29 Aligned_cols=301 Identities=12% Similarity=0.047 Sum_probs=215.1
Q ss_pred CCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HH
Q 005178 324 QPNLVVYNTLLEAM--GKAGKPGLARSLFDEMVES-GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDF-IL 399 (710)
Q Consensus 324 ~p~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~ 399 (710)
.|+..+....+.++ +-.++...|...+-.+... -++-|+.....+.+.+...|+.++|+..|++....+ |+. ..
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~ 268 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEA 268 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhh
Confidence 33333333344444 4455555666555555433 356678888999999999999999999999988652 222 12
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 005178 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479 (710)
Q Consensus 400 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 479 (710)
.....-.+.+.|+++....+...+.... ..+..-|-.-+.......+++.|+.+-++.++.+.. +...|-.-...+.
T Consensus 269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~--~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~ 345 (564)
T KOG1174|consen 269 MDLYAVLLGQEGGCEQDSALMDYLFAKV--KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLI 345 (564)
T ss_pred HHHHHHHHHhccCHhhHHHHHHHHHhhh--hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHH
Confidence 2222334567889999888888887644 345555655566667788999999999999885443 5667766678889
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHH-hhcCCcccHHHHH
Q 005178 480 KARRIDDLVRVFGVSIDRGVKP-DDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIE-DNSTGFENIKEEF 557 (710)
Q Consensus 480 ~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~-~~~~~~~~~~~~a 557 (710)
..|+.++|.-.|+..+.. .| +..+|..|+.+|...|.+.||.-.-+...+.-|.....+.++| ..........+.|
T Consensus 346 ~~~R~~~A~IaFR~Aq~L--ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKA 423 (564)
T KOG1174|consen 346 ALERHTQAVIAFRTAQML--APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKA 423 (564)
T ss_pred hccchHHHHHHHHHHHhc--chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHH
Confidence 999999999999998763 43 5679999999999999999999999999888899988888887 4444444467889
Q ss_pred HHHHHh-ccCCCCh-hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcccccccccchhccccc-ChHHHHHHHHHHHH
Q 005178 558 RNVIKD-TEVDARR-PFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSL-SVGAAQTALEEWMW 634 (710)
Q Consensus 558 ~~~~~~-~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~-~~G~~~~Al~~~~~ 634 (710)
+.+.++ +..+|+- +..+.+...|...|++++++.++++.+.. +|+ ......+...+ .+...++|++.|..
T Consensus 424 Kkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D-----~~LH~~Lgd~~~A~Ne~Q~am~~y~~ 496 (564)
T KOG1174|consen 424 KKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPD-----VNLHNHLGDIMRAQNEPQKAMEYYYK 496 (564)
T ss_pred HHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccc-----cHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 998876 6788864 36778889999999999999999987632 222 11111122223 34667778877776
Q ss_pred HHHH
Q 005178 635 TLAK 638 (710)
Q Consensus 635 ~~~~ 638 (710)
.++.
T Consensus 497 ALr~ 500 (564)
T KOG1174|consen 497 ALRQ 500 (564)
T ss_pred HHhc
Confidence 6553
No 69
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.22 E-value=2.1e-09 Score=101.46 Aligned_cols=233 Identities=12% Similarity=0.063 Sum_probs=107.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 005178 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARW 377 (710)
Q Consensus 298 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 377 (710)
+.++|.+.|.+.+|.+-|+.-.+. .|-+.||-.|-.+|.+..++..|+.+|.+-++. ++-|+....-+...+...++
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHHh
Confidence 444444444444444444444332 233334444444444444444444444444332 11122222233344444445
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 005178 378 AKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE 457 (710)
Q Consensus 378 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 457 (710)
.++|.++|+...+.. +.++.....+...|...++.+.|..+++++.+.| ..+...|+.+.-+|.-.+++|-++.-|+
T Consensus 306 ~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG--~~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG--AQSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc--CCChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 555555555544431 1133333334444444455555555555555554 2444455555555555555555555555
Q ss_pred HHHHcCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCc
Q 005178 458 EMSELGVAIN--VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPK 535 (710)
Q Consensus 458 ~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 535 (710)
+....--.|+ ...|-.+.......|++..|.+.|+-.+..+-. +...++.|.-.-.+.|++++|..++..+....|+
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 5444322222 234444444445555555555555555433221 2335555555555556666666666555555554
Q ss_pred HH
Q 005178 536 LV 537 (710)
Q Consensus 536 ~~ 537 (710)
..
T Consensus 462 m~ 463 (478)
T KOG1129|consen 462 MA 463 (478)
T ss_pred cc
Confidence 43
No 70
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.22 E-value=6.7e-09 Score=108.82 Aligned_cols=240 Identities=18% Similarity=0.164 Sum_probs=160.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC-
Q 005178 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSL-----GV-QPNLV-VYNTLLEAMGKAGKPGLARSLFDEMVES-----GL- 358 (710)
Q Consensus 292 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~- 358 (710)
..+...|..+|...|+++.|..+++...+. |. .|... ..+.+...|...+++++|..+|+++... |-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 344445666666777777776666665542 21 22222 2334666777778888888888777642 21
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCC-CCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhC----
Q 005178 359 TP-DEKTLTALIKIYGKARWAKDALELWERMREN-----KWP-MDF-ILYNTLLNMCADIGLVEEAERLFEDMKLS---- 426 (710)
Q Consensus 359 ~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~-~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~---- 426 (710)
.| -..+++.|..+|.+.|++++|...+++..+. |.. +.+ ..++.+...|+..+++++|..+++...+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 11 1346667777788888887777776665431 111 122 24566777788888888888888765442
Q ss_pred -CCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CC--Cc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-
Q 005178 427 -DYCK-PDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL----GV--AI-NVMGCTCLIQCLGKARRIDDLVRVFGVSID- 496 (710)
Q Consensus 427 -~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~--~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~- 496 (710)
+... --..+++.|...|...|++++|.++|++++.. +- .+ ....++.|...|.+.+++++|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 1101 12467899999999999999999999998752 11 11 245678889999999999999999987653
Q ss_pred ---CCC-CCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005178 497 ---RGV-KPDD-RLCGCLLSVVSLCETSEDVGKVITCLQQ 531 (710)
Q Consensus 497 ---~~~-~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 531 (710)
.|. .|+. .+|..|...|...|++++|+++.+.+.+
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 222 2333 3788999999999999999999888753
No 71
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.18 E-value=2.1e-06 Score=89.16 Aligned_cols=437 Identities=12% Similarity=0.069 Sum_probs=271.7
Q ss_pred HHHHHHHHhhCCCCCCHHHHH-HHHHhccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHC
Q 005178 138 EEAFLRAITEIPHQPTRENAL-LILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSN 216 (710)
Q Consensus 138 ~~~~~~~l~~~~~~~~~~~~~-~~l~~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 216 (710)
......+|..+++.|...... ..|+.+++-++|....+...+. -..+.++|.++.-.+....++++|++.|......
T Consensus 27 LK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~--d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~ 104 (700)
T KOG1156|consen 27 LKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN--DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI 104 (700)
T ss_pred HHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhcc--CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc
Confidence 345566677776666544333 4588999999999998887664 3567899999999999999999999999999886
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHH
Q 005178 217 EIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG-WKPDPIAF 295 (710)
Q Consensus 217 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g-~~~~~~~~ 295 (710)
+ +-|...|.-+--.-.+.|+++...+.-.++.+.... ....|..+..++.-.|+...|..+.+...+.. -.|+...|
T Consensus 105 ~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~ 182 (700)
T KOG1156|consen 105 E-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDY 182 (700)
T ss_pred C-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHH
Confidence 4 235567776666667788888888877777776322 56778888889999999999999999887764 24666665
Q ss_pred HHHHH------HHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005178 296 SVLGK------MFGESGDYDGIRYVLQEMKSLGVQPNLVV-YNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368 (710)
Q Consensus 296 ~~li~------~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 368 (710)
.-... ...+.|.+++|.+.+..-... ..|-.. -.+-...+.+.+++++|..+|..++.. .||..-|...
T Consensus 183 e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~ 258 (700)
T KOG1156|consen 183 EHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEG 258 (700)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHH
Confidence 53332 346678888888887765542 123333 345567788999999999999999987 5776666554
Q ss_pred HH-HHHhcCCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhC
Q 005178 369 IK-IYGKARWAKDAL-ELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446 (710)
Q Consensus 369 i~-~~~~~g~~~~A~-~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 446 (710)
+. ++.+--+.-++. .+|....+. ++-....-..=+.......-.+..-+++..+.+.|+ ++ ++..+...|-.-
T Consensus 259 l~~~lgk~~d~~~~lk~ly~~ls~~-y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~-p~---vf~dl~SLyk~p 333 (700)
T KOG1156|consen 259 LEKALGKIKDMLEALKALYAILSEK-YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGV-PS---VFKDLRSLYKDP 333 (700)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhc-CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCC-Cc---hhhhhHHHHhch
Confidence 44 443343444444 666666543 111111111001111111223334455556666663 22 333444444332
Q ss_pred CCHHHHHHHHHHHHH----cC----------CCcCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHH
Q 005178 447 GNVDNAIELFEEMSE----LG----------VAINVMGC--TCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR-LCGCL 509 (710)
Q Consensus 447 g~~~~A~~~~~~m~~----~~----------~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l 509 (710)
...+-..++.-.+.. .| -+|....| -.++..|-+.|+++.|..+.+..++. .|+.+ .|..-
T Consensus 334 ~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~K 411 (700)
T KOG1156|consen 334 EKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVK 411 (700)
T ss_pred hHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHH
Confidence 222211111111111 10 14555444 44567788889999999999887763 55544 45555
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCcHHHHH----HHHHhhcCCcccHHHHHHHHHHhccCCCCh-h--------hHHH-
Q 005178 510 LSVVSLCETSEDVGKVITCLQQANPKLVAFL----NLIEDNSTGFENIKEEFRNVIKDTEVDARR-P--------FCNC- 575 (710)
Q Consensus 510 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~----~~L~~~~~~~~~~~~~a~~~~~~~~~~~~~-~--------~~~~- 575 (710)
...+.+.|+.++|..+++++.+++-.+..+. ..+.+ .+..++|.+.......+... . .|--
T Consensus 412 aRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLr-----An~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~ 486 (700)
T KOG1156|consen 412 ARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLR-----ANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQL 486 (700)
T ss_pred HHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHH-----ccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhH
Confidence 6788889999999999999888764443222 22222 23566677666554332211 0 2322
Q ss_pred -HHHHHHhCCCHHHHHHHHH
Q 005178 576 -LIDICRNRNLNERAHELLY 594 (710)
Q Consensus 576 -l~~~~~~~g~~~~A~~~~~ 594 (710)
-+.+|.+.|++.+|.+=|.
T Consensus 487 E~g~ay~r~~k~g~ALKkfh 506 (700)
T KOG1156|consen 487 EDGEAYLRQNKLGLALKKFH 506 (700)
T ss_pred hhhHHHHHHHHHHHHHHHHh
Confidence 2457888888888864443
No 72
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.16 E-value=3.2e-08 Score=105.44 Aligned_cols=252 Identities=14% Similarity=0.074 Sum_probs=172.7
Q ss_pred HHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 005178 175 NWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLM 254 (710)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 254 (710)
-.++.. ++.|+.++|..+|.-|+..|+.+.|- +|.-|.-.....+...|+.++.+....++.+.+. .
T Consensus 14 a~~e~~-gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------e 80 (1088)
T KOG4318|consen 14 ALHEIS-GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------E 80 (1088)
T ss_pred HHHHHh-cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------C
Confidence 334433 48899999999999999999999998 9988887777778889999999999988887776 5
Q ss_pred CCHHHHHHHHHHHHHcCCHHH---HHHHHHHHH----hCCCCCCH--------------HHHHHHHHHHHhcCCHHHHHH
Q 005178 255 PDEVTYSAILDVYAKSGKVEE---VLSLYERGV----ASGWKPDP--------------IAFSVLGKMFGESGDYDGIRY 313 (710)
Q Consensus 255 ~~~~~~~~li~~~~~~g~~~~---A~~~~~~~~----~~g~~~~~--------------~~~~~li~~~~~~g~~~~A~~ 313 (710)
|-..+|..|..+|...|++.. +.+.+..+. ..|+.-.. ..-..++....-.|-++.+++
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllk 160 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLK 160 (1088)
T ss_pred CchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999998654 333222222 11211100 011123334444556666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 005178 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKW 393 (710)
Q Consensus 314 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 393 (710)
++..+...... ..... .+.-+... ..-..++........-.|+..+|.++++.-.-+|+.+.|..++.+|.+.|+
T Consensus 161 ll~~~Pvsa~~-~p~~v--fLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gf 235 (1088)
T KOG4318|consen 161 LLAKVPVSAWN-APFQV--FLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGF 235 (1088)
T ss_pred HHhhCCccccc-chHHH--HHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCC
Confidence 66554322100 01111 12222221 222333333322211158899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCC
Q 005178 394 PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448 (710)
Q Consensus 394 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 448 (710)
+.+..-|-.|+-+ .++...++.++.-|.+.|+ .|+..|+...+..+..+|.
T Consensus 236 pir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv-~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 236 PIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGV-QPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred Ccccccchhhhhc---CccchHHHHHHHHHHHhcC-CCCcchhHHHHHhhhcchh
Confidence 9888776666655 7888889999999999997 8999999888887777655
No 73
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.16 E-value=3e-08 Score=104.06 Aligned_cols=237 Identities=18% Similarity=0.209 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC-----CC-CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CC
Q 005178 259 TYSAILDVYAKSGKVEEVLSLYERGVAS-----GW-KPDPI-AFSVLGKMFGESGDYDGIRYVLQEMKSL-----GV-QP 325 (710)
Q Consensus 259 ~~~~li~~~~~~g~~~~A~~~~~~~~~~-----g~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p 325 (710)
+...+...|...|++++|+.++++.++. |. .|... ..+.+...|...+++++|..+|+++... |- .|
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3444555666666666666666555432 10 12222 2223455566666666666666666441 21 11
Q ss_pred C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CCC-CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCC
Q 005178 326 N-LVVYNTLLEAMGKAGKPGLARSLFDEMVES-----GLT-PDE-KTLTALIKIYGKARWAKDALELWERMREN---KWP 394 (710)
Q Consensus 326 ~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~-p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~ 394 (710)
. ..+++.|...|.+.|++++|...++...+- |.. |.+ ..++.+...|+..+++++|..++....+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 1 224556666666666666666665554321 111 111 23455556666677777777666654431 111
Q ss_pred C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC----C--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---
Q 005178 395 M----DFILYNTLLNMCADIGLVEEAERLFEDMKLSD----Y--CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE--- 461 (710)
Q Consensus 395 ~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--- 461 (710)
+ -..+++.|...|...|++++|+++|+++.... . ..-....++.|...|.+.+++.+|.++|.+...
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 1 13466777777777777777777777664421 1 011234566677777777777777777766432
Q ss_pred -cCCC-cC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005178 462 -LGVA-IN-VMGCTCLIQCLGKARRIDDLVRVFGVSI 495 (710)
Q Consensus 462 -~~~~-p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 495 (710)
.|.. |+ ..+|..|...|...|++++|+++.+...
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2322 22 4567777778888888888877777665
No 74
>PF13041 PPR_2: PPR repeat family
Probab=99.14 E-value=1.3e-10 Score=81.79 Aligned_cols=47 Identities=43% Similarity=0.569 Sum_probs=18.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005178 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIY 372 (710)
Q Consensus 326 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 372 (710)
|..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444333
No 75
>PF13041 PPR_2: PPR repeat family
Probab=99.13 E-value=1.5e-10 Score=81.52 Aligned_cols=49 Identities=29% Similarity=0.536 Sum_probs=22.9
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 005178 431 PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479 (710)
Q Consensus 431 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 479 (710)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 3444444444444444444444444444444444444444444444443
No 76
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.12 E-value=2.5e-07 Score=98.40 Aligned_cols=127 Identities=16% Similarity=0.079 Sum_probs=66.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Q 005178 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445 (710)
Q Consensus 366 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 445 (710)
.-+...|...|++++|++++++.++.... .+..|..-...|-..|++.+|.+.++.....+ .-|...-+-.+..+.+
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD--~~DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLKEAAEAMDEARELD--LADRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC--hhhHHHHHHHHHHHHH
Confidence 33444455556666666666655554211 24445555555555666666666666555554 3455555555555556
Q ss_pred CCCHHHHHHHHHHHHHcCCCcCH--H----H--HHHHHHHHHhcCCHHHHHHHHHHHH
Q 005178 446 GGNVDNAIELFEEMSELGVAINV--M----G--CTCLIQCLGKARRIDDLVRVFGVSI 495 (710)
Q Consensus 446 ~g~~~~A~~~~~~m~~~~~~p~~--~----~--~~~li~~~~~~g~~~~A~~~~~~m~ 495 (710)
+|++++|.+++......+..|-. . . ......+|.+.|++..|++.|....
T Consensus 275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66666666655555444322211 1 1 1334556666777766666655544
No 77
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.10 E-value=4.6e-06 Score=86.65 Aligned_cols=454 Identities=14% Similarity=0.066 Sum_probs=286.7
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005178 164 LKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243 (710)
Q Consensus 164 l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 243 (710)
.+++...+.+.+.+... ++....+.....-.+...|+-++|........+..+. +.+.|+.+.-.+....++++|++
T Consensus 20 ~kQYkkgLK~~~~iL~k--~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKK--FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHhHHHHHHHHHHh--CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHH
Confidence 34566777777777664 3444455555555667889999999998888776443 67888888888888899999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-
Q 005178 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG- 322 (710)
Q Consensus 244 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g- 322 (710)
.|......+.. |...|.-+.-.-++.|+++.....-.++.+.. +.....|..+..++.-.|++..|..++++..+..
T Consensus 97 cy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 97 CYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999887643 78888877777778888888887777777652 3346678888889999999999999999998753
Q ss_pred CCCCHHHHHHHH------HHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 005178 323 VQPNLVVYNTLL------EAMGKAGKPGLARSLFDEMVESGLTPDEK-TLTALIKIYGKARWAKDALELWERMRENKWPM 395 (710)
Q Consensus 323 ~~p~~~~~~~li------~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 395 (710)
-.|+...|.... ....+.|..++|.+.+..-... ..|.. .-..-...+.+.+++++|..+|..++.. .|
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nP 250 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NP 250 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--Cc
Confidence 246665554332 3445678888888777665432 12222 2234556778899999999999999987 45
Q ss_pred CHHHHHHHHH-HHHHcCCHHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHcCCCcCHHHHH
Q 005178 396 DFILYNTLLN-MCADIGLVEEAE-RLFEDMKLSDYCKPDNYSYTAMLNIYGS-GGNVDNAIELFEEMSELGVAINVMGCT 472 (710)
Q Consensus 396 ~~~~~~~li~-~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~~~~ 472 (710)
|..-|.-.+. ++.+.-+.-++. .+|....+.- |....-..+--.... ..-.+..-.++..+.+.|+++-. .
T Consensus 251 dn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y---~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf---~ 324 (700)
T KOG1156|consen 251 DNLDYYEGLEKALGKIKDMLEALKALYAILSEKY---PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVF---K 324 (700)
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC---cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchh---h
Confidence 6555555444 443344444444 6666655432 211111111111111 22233444566667777776433 3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH----HCC----------CCCCHHHHH--HHHHHHHhcCChHHHHHHHHHHHHhCCcH
Q 005178 473 CLIQCLGKARRIDDLVRVFGVSI----DRG----------VKPDDRLCG--CLLSVVSLCETSEDVGKVITCLQQANPKL 536 (710)
Q Consensus 473 ~li~~~~~~g~~~~A~~~~~~m~----~~~----------~~p~~~~~~--~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 536 (710)
.+...|-.-.+.+-..++.-.+. ..| -.|....|. .+...+-..|+++.|..+++.+.+..|..
T Consensus 325 dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTl 404 (700)
T KOG1156|consen 325 DLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTL 404 (700)
T ss_pred hhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchH
Confidence 33333332222221111111111 111 145555444 67778889999999999999999999998
Q ss_pred HHHHHHHHhhcCCcccHHHHHHHHHHhcc-C-CCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--CCccccccccc
Q 005178 537 VAFLNLIEDNSTGFENIKEEFRNVIKDTE-V-DARRPFCNCLIDICRNRNLNERAHELLYLGTLYGL--YPGLHNKTLDE 612 (710)
Q Consensus 537 ~~~~~~L~~~~~~~~~~~~~a~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~~ 612 (710)
...+-+=++.+...| ..++|..++.... . .+|..+=.--+.-..+.++.++|.++.-.-...|. ..++. .-+..
T Consensus 405 iEly~~KaRI~kH~G-~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~-~mqcm 482 (700)
T KOG1156|consen 405 IELYLVKARIFKHAG-LLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLA-EMQCM 482 (700)
T ss_pred HHHHHHHHHHHHhcC-ChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHH-HhhhH
Confidence 877755555544446 6677777776542 2 34443333455666788999999998887765553 22222 14567
Q ss_pred chhc--cccc-ChHHHHHHHHHHHH
Q 005178 613 WSLD--VRSL-SVGAAQTALEEWMW 634 (710)
Q Consensus 613 w~~~--~~~~-~~G~~~~Al~~~~~ 634 (710)
|-.. ...+ ++|..-+|+.-|-+
T Consensus 483 Wf~~E~g~ay~r~~k~g~ALKkfh~ 507 (700)
T KOG1156|consen 483 WFQLEDGEAYLRQNKLGLALKKFHE 507 (700)
T ss_pred HHhHhhhHHHHHHHHHHHHHHHHhh
Confidence 7643 2223 45666677765544
No 78
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.09 E-value=8.4e-08 Score=96.61 Aligned_cols=195 Identities=13% Similarity=-0.008 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 005178 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL 478 (710)
Q Consensus 399 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 478 (710)
.|..+...|...|+.++|...|++..+.. +.+...|+.+...|...|++++|...|++.++.... +..+|..+..++
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l 142 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALR--PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 34445555555566666666666555544 345555666666666666666666666665553221 344555555555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh-CCcHHHHHHHHHhhcCCcccHHHHH
Q 005178 479 GKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQA-NPKLVAFLNLIEDNSTGFENIKEEF 557 (710)
Q Consensus 479 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~p~~~~~~~~L~~~~~~~~~~~~~a 557 (710)
...|++++|++.|++..+. .|+..........+...++.++|...|++.... +|+.. .+. +...+.......+..
T Consensus 143 ~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~-~~~-~~~~~lg~~~~~~~~ 218 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQW-GWN-IVEFYLGKISEETLM 218 (296)
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCcccc-HHH-HHHHHccCCCHHHHH
Confidence 5666666666666665543 232221111112223345556666655443322 22221 111 111111000011111
Q ss_pred HHHHHhccC----CC-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 005178 558 RNVIKDTEV----DA-RRPFCNCLIDICRNRNLNERAHELLYLGTLYG 600 (710)
Q Consensus 558 ~~~~~~~~~----~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 600 (710)
..+.+.... .| ....|..|+.++.+.|++++|+..|+++++.+
T Consensus 219 ~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 219 ERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 111111111 11 12378899999999999999999999988554
No 79
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.07 E-value=2e-07 Score=84.68 Aligned_cols=206 Identities=14% Similarity=-0.029 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005178 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCA 408 (710)
Q Consensus 329 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 408 (710)
+..-|.-+|...|+...|.+-+++.++.. +.+..+|..+...|.+.|+.+.|.+-|++....... +..+.|....-+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 34456677888888888888888888764 344667788888888888888888888888776444 5667777777788
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 005178 409 DIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLV 488 (710)
Q Consensus 409 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 488 (710)
..|++++|...|++........--..+|..+.-+..+.|+.+.|...|++.++.... ...+...+.....+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 888888888888888775443334567888888888888888888888888875433 4556677777788888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHH
Q 005178 489 RVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVA 538 (710)
Q Consensus 489 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 538 (710)
.+++.....+. ++.......+..-...|+.+.+-++=..+.+..|....
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 88888776554 77777777777777788877777776667777776543
No 80
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.06 E-value=1.7e-07 Score=94.40 Aligned_cols=219 Identities=15% Similarity=0.118 Sum_probs=112.1
Q ss_pred CCHHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005178 236 NLFDEAIEWFERMYKTG-LMP--DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIR 312 (710)
Q Consensus 236 g~~~~A~~~~~~m~~~g-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 312 (710)
+..+.++.-+.+++... ..| ....|..+...|.+.|+.++|...|++.++.. +.+...|+.+...|...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 34455555555555431 111 13445566666666677777777666666643 334566666666667777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 005178 313 YVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENK 392 (710)
Q Consensus 313 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 392 (710)
..|++..+.. +-+..+|..+..++...|++++|.+.|+...+.. |+..........+...++.++|...|.+.....
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 7776666542 1134456666666666677777777776666542 322111111222334456666666665544321
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-----CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 005178 393 WPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY-----CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463 (710)
Q Consensus 393 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 463 (710)
.++...+ .+ .....|+...+ +.+..+.+... .+....+|..+...|.+.|++++|...|++..+.+
T Consensus 196 -~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 -DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred -CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2221111 11 22233444333 23333332110 01123456666666666666666666666666543
No 81
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=1.2e-05 Score=82.71 Aligned_cols=151 Identities=13% Similarity=0.046 Sum_probs=97.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH--------HHHHcCCCcCHHHHHHHHHHHHhcCC
Q 005178 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE--------EMSELGVAINVMGCTCLIQCLGKARR 483 (710)
Q Consensus 412 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~~~~p~~~~~~~li~~~~~~g~ 483 (710)
...+|.+++....+... ......--.++......|+++.|.+++. .+.+.+..| .+...++..|.+.++
T Consensus 356 ~~~ka~e~L~~~~~~~p-~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~ 432 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHP-EKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKD 432 (652)
T ss_pred HHhhhHHHHHHHhccCC-chhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccC
Confidence 46677777777765542 2224566677778888999999999998 555544444 444556666778888
Q ss_pred HHHHHHHHHHHHHC--CCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHH
Q 005178 484 IDDLVRVFGVSIDR--GVKPDDR----LCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEF 557 (710)
Q Consensus 484 ~~~A~~~~~~m~~~--~~~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a 557 (710)
.+.|..++.+.+.. .-.+... ++.-+...-.+.|+.++|..+++++.+.+|++..++.-+..++... ..+.|
T Consensus 433 ~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~--d~eka 510 (652)
T KOG2376|consen 433 NDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL--DPEKA 510 (652)
T ss_pred CccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc--CHHHH
Confidence 77777777776531 1111222 3333334444679999999999999999998887665554444422 45667
Q ss_pred HHHHHhccCC
Q 005178 558 RNVIKDTEVD 567 (710)
Q Consensus 558 ~~~~~~~~~~ 567 (710)
..+-+.++..
T Consensus 511 ~~l~k~L~p~ 520 (652)
T KOG2376|consen 511 ESLSKKLPPL 520 (652)
T ss_pred HHHhhcCCCc
Confidence 7777766443
No 82
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.98 E-value=5.7e-06 Score=86.48 Aligned_cols=200 Identities=11% Similarity=-0.006 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHCCC-CCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005178 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEI-ELDNITY-STIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAIL 264 (710)
Q Consensus 187 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 264 (710)
...|..+...+...|+.+.+.+.+....+... .++.... ......+...|++++|.+++++..+.... +...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH-h
Confidence 44555666666666777776666665544321 1222211 12222556678888888888877765322 3333332 2
Q ss_pred HHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 005178 265 DVYAK----SGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340 (710)
Q Consensus 265 ~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 340 (710)
..+.. .+....+.+.++... ...+........+...+...|++++|...+++..+.. +.+...+..+..++...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWA-PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccC-cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc
Confidence 22222 334444444444311 1112223344455567777788888888888777753 23455667777777777
Q ss_pred CCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005178 341 GKPGLARSLFDEMVESGL-TPDE--KTLTALIKIYGKARWAKDALELWERMRE 390 (710)
Q Consensus 341 g~~~~A~~~~~~m~~~g~-~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~ 390 (710)
|++++|...+++...... .++. ..|..+...+...|++++|..+|++...
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 888888877777665421 1222 2344566677777777777777777654
No 83
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=4.9e-06 Score=84.83 Aligned_cols=385 Identities=13% Similarity=0.053 Sum_probs=209.4
Q ss_pred hccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHH
Q 005178 163 SLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELD-NITYSTIITCAKRCNLFDEA 241 (710)
Q Consensus 163 ~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A 241 (710)
+-++++.|+..|-..+... ++|.+.|..-..+|.+.|++++|.+=-.+-.+. .|+ ...|+-...++.-.|++++|
T Consensus 14 s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 14 SSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred ccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHHHH
Confidence 3457889999998887764 568888999999999999999888766666554 455 46788888888888999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH------HHHhC---CCCCCHHHHHHHHHHHHh--------
Q 005178 242 IEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYE------RGVAS---GWKPDPIAFSVLGKMFGE-------- 304 (710)
Q Consensus 242 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~------~~~~~---g~~~~~~~~~~li~~~~~-------- 304 (710)
+.-|.+-++.... +...++.+..++.... . +.+.|. .+... ........|..++..+-+
T Consensus 90 ~~ay~~GL~~d~~-n~~L~~gl~~a~~~~~--~-~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 90 ILAYSEGLEKDPS-NKQLKTGLAQAYLEDY--A-ADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHhhcCCc-hHHHHHhHHHhhhHHH--H-hhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 9999887776422 5667777777772111 0 111111 11000 000011122222222211
Q ss_pred --cCCHHHHHHHHHHH-----HHCC-------CCC------------C----------HHHHHHHHHHHHHcCCHHHHHH
Q 005178 305 --SGDYDGIRYVLQEM-----KSLG-------VQP------------N----------LVVYNTLLEAMGKAGKPGLARS 348 (710)
Q Consensus 305 --~g~~~~A~~~~~~m-----~~~g-------~~p------------~----------~~~~~~li~~~~~~g~~~~A~~ 348 (710)
-.++..+.-++... ...| ..| | ..-...+.++..+..+++.|++
T Consensus 166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q 245 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQ 245 (539)
T ss_pred cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence 11111121111110 0000 011 0 1123446666667777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-------HHHHHHHcCCHHHHHHHHH
Q 005178 349 LFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT-------LLNMCADIGLVEEAERLFE 421 (710)
Q Consensus 349 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~-------li~~~~~~g~~~~A~~~~~ 421 (710)
-+....+.. .+..-++....+|...|.+......-....+.|.. ...-|+. +..+|.+.++++.|+..|.
T Consensus 246 ~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ 322 (539)
T KOG0548|consen 246 HYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQ 322 (539)
T ss_pred HHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence 777777653 34445566666777777777776666666555433 2222222 2235555667777777777
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 005178 422 DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501 (710)
Q Consensus 422 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 501 (710)
+...... .|+. ..+....+++....+.....+... ..-...-...+.+.|++..|++.|.+++.....
T Consensus 323 kaLte~R-t~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~- 390 (539)
T KOG0548|consen 323 KALTEHR-TPDL---------LSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE- 390 (539)
T ss_pred HHhhhhc-CHHH---------HHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc-
Confidence 7655432 2221 223333444444444433322111 111122245566677777777777777665422
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHHHHhccCCCCh
Q 005178 502 DDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARR 570 (710)
Q Consensus 502 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~~~~~~~~~ 570 (710)
|...|.....+|.+.|.+..|.+--+...+++|+....+.-=|.++....++.+....+.+....+|+.
T Consensus 391 Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~ 459 (539)
T KOG0548|consen 391 DARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSN 459 (539)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Confidence 455666666677777777777776666666777665544333333322232333333344444445543
No 84
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.97 E-value=1.1e-06 Score=82.32 Aligned_cols=187 Identities=12% Similarity=0.043 Sum_probs=96.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCH
Q 005178 405 NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484 (710)
Q Consensus 405 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 484 (710)
..+.+.|+++.|.+-+..|.-......|++|...+.-.=. .+++.+..+-+.-+.+.+. -...||..++-.||+..-+
T Consensus 249 AIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf 326 (459)
T KOG4340|consen 249 AIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYF 326 (459)
T ss_pred hhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHH
Confidence 3456778888888888888655444567777766543322 2334444444444444433 3467888888888888888
Q ss_pred HHHHHHHHHHHHCCCC-CCHHHHHHHHHHHH-hcCChHHHHHHHHHHHHhCCcH--HHHHHHHHhhcCCcccHHHHHHHH
Q 005178 485 DDLVRVFGVSIDRGVK-PDDRLCGCLLSVVS-LCETSEDVGKVITCLQQANPKL--VAFLNLIEDNSTGFENIKEEFRNV 560 (710)
Q Consensus 485 ~~A~~~~~~m~~~~~~-p~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~p~~--~~~~~~L~~~~~~~~~~~~~a~~~ 560 (710)
+-|..++-+-.....+ .+...|+ |+.++. -.-..++|.+-++.+.+.-.+- ..++..-.. .. .+..++.+..
T Consensus 327 ~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~-r~--~~dd~a~R~a 402 (459)
T KOG4340|consen 327 DLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEA-RH--NRDDEAIRKA 402 (459)
T ss_pred hHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cccHHHHHHH
Confidence 8888887542211111 1122232 333333 2344566666554432210000 000000000 00 0011223333
Q ss_pred HHhccC--CCChhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005178 561 IKDTEV--DARRPFCNCLIDICRNRNLNERAHELLYLGT 597 (710)
Q Consensus 561 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 597 (710)
++.... +.-.++..+-.+.|++..++..+.++|..-.
T Consensus 403 i~~Yd~~LE~YLPVlMa~AkiyW~~~Dy~~vEk~Fr~Sv 441 (459)
T KOG4340|consen 403 VNEYDETLEKYLPVLMAQAKIYWNLEDYPMVEKIFRKSV 441 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHH
Confidence 332211 1123355667788999999999999998754
No 85
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.95 E-value=7.2e-06 Score=78.89 Aligned_cols=402 Identities=9% Similarity=0.012 Sum_probs=238.5
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005178 164 LKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243 (710)
Q Consensus 164 l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 243 (710)
-.++..|+.+++.-..... +....+---+..++...|++++|...+.-+... -.++...+-.+..++.-.|.+.+|..
T Consensus 35 ~rDytGAislLefk~~~~~-EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y~eA~~ 112 (557)
T KOG3785|consen 35 NRDYTGAISLLEFKLNLDR-EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQYIEAKS 112 (557)
T ss_pred cccchhHHHHHHHhhccch-hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHHHHHHH
Confidence 3468888888887653321 111122233556677889999999998887764 34566777777777777888888887
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 005178 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGV 323 (710)
Q Consensus 244 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 323 (710)
+-.+..+ +...-..|+..-.+.|+-++-..+.+.+.+. ..---+|.......-.+++|++++..+...
T Consensus 113 ~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d-- 180 (557)
T KOG3785|consen 113 IAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD-- 180 (557)
T ss_pred HHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 7655432 3344445556666778877777776666542 233344555555566788999999988875
Q ss_pred CCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 005178 324 QPNLVVYNT-LLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402 (710)
Q Consensus 324 ~p~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 402 (710)
.|+....|. +.-+|.+..-++-+.+++.--.++ ++.+....|....-..+.=.-..|.+-...+.+.+-. . | -
T Consensus 181 n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~-~---~-~ 254 (557)
T KOG3785|consen 181 NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ-E---Y-P 254 (557)
T ss_pred ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc-c---c-h
Confidence 345555553 344566777777787877776655 2233344443333333322223333334444433211 1 1 1
Q ss_pred HHHHHHHc-----CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 005178 403 LLNMCADI-----GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477 (710)
Q Consensus 403 li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 477 (710)
.+.-+++. .+-+.|++++--+.+. -| ..-..|+--|.+.+++.+|..+.+++.- .+..-|-.-...
T Consensus 255 f~~~l~rHNLVvFrngEgALqVLP~L~~~---IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~P----ttP~EyilKgvv 325 (557)
T KOG3785|consen 255 FIEYLCRHNLVVFRNGEGALQVLPSLMKH---IP--EARLNLIIYYLNQNDVQEAISLCKDLDP----TTPYEYILKGVV 325 (557)
T ss_pred hHHHHHHcCeEEEeCCccHHHhchHHHhh---Ch--HhhhhheeeecccccHHHHHHHHhhcCC----CChHHHHHHHHH
Confidence 22223332 2346677766655532 12 3345567778999999999998876542 122223222222
Q ss_pred HHhcC-------CHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCC
Q 005178 478 LGKAR-------RIDDLVRVFGVSIDRGVKPDDR-LCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTG 549 (710)
Q Consensus 478 ~~~~g-------~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~ 549 (710)
++..| ...-|.+.|+-.-+.+..-|.+ --.++.+++.-..++++.+-++..+....-++..|.-.++.+...
T Consensus 326 ~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~a 405 (557)
T KOG3785|consen 326 FAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLA 405 (557)
T ss_pred HHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHH
Confidence 33333 3455666665544444443333 223566677777889999999999988777777777667665555
Q ss_pred cccHHHHHHHHHHhc-cCC-CChhhHHH-HHHHHHhCCCHHHHHHHHHH
Q 005178 550 FENIKEEFRNVIKDT-EVD-ARRPFCNC-LIDICRNRNLNERAHELLYL 595 (710)
Q Consensus 550 ~~~~~~~a~~~~~~~-~~~-~~~~~~~~-l~~~~~~~g~~~~A~~~~~~ 595 (710)
.| ...+|++++-.+ +.+ .+..+|-+ |...|.+.|..+.|..++-+
T Consensus 406 tg-ny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk 453 (557)
T KOG3785|consen 406 TG-NYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLK 453 (557)
T ss_pred hc-ChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHh
Confidence 56 556677766544 222 23445654 55667788889999877654
No 86
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.95 E-value=1.2e-05 Score=77.14 Aligned_cols=319 Identities=12% Similarity=0.029 Sum_probs=195.8
Q ss_pred CcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHH---HHHHcCCHHHHHHHHHHHHHcCCCCCHHH-H
Q 005178 185 METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIIT---CAKRCNLFDEAIEWFERMYKTGLMPDEVT-Y 260 (710)
Q Consensus 185 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~---~~~~~g~~~~A~~~~~~m~~~g~~~~~~~-~ 260 (710)
.++.-.--+...+...|++.+|+.-|...++. |...|.++.+ .|...|+-..|+.=|.+.++. +||-.. -
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~AR 109 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAAR 109 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHH
Confidence 34444455667777788888888888877764 5555555544 677778888888777777765 555332 2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH----------------HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 005178 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIA----------------FSVLGKMFGESGDYDGIRYVLQEMKSLGVQ 324 (710)
Q Consensus 261 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~----------------~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 324 (710)
..-...+.+.|.++.|..=|+.++... |+..+ ....+..+.-.|+...|+.....+++.. +
T Consensus 110 iQRg~vllK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~ 186 (504)
T KOG0624|consen 110 IQRGVVLLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-P 186 (504)
T ss_pred HHhchhhhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-c
Confidence 223345678888888888888887653 32111 1122333445566666666666666532 2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005178 325 PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404 (710)
Q Consensus 325 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 404 (710)
-|...|..-..+|...|++..|+.-++..-+.. ..+..++--+-..+...|+.+.++...++.++. .||.-..
T Consensus 187 Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~C---- 259 (504)
T KOG0624|consen 187 WDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLC---- 259 (504)
T ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhH----
Confidence 355555556666666666666665555554433 223333334445555666666666666666543 2332211
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHHHhc
Q 005178 405 NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN---VMGCTCLIQCLGKA 481 (710)
Q Consensus 405 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~ 481 (710)
|..-..+.+..+.++.|.+ ....++|.+++.-.+...+...... ...+..+-.+|...
T Consensus 260 --f~~YKklkKv~K~les~e~-----------------~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d 320 (504)
T KOG0624|consen 260 --FPFYKKLKKVVKSLESAEQ-----------------AIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYRED 320 (504)
T ss_pred --HHHHHHHHHHHHHHHHHHH-----------------HHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeeccccc
Confidence 1111122222223333322 2345667777777777776543322 23445566778889
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHH
Q 005178 482 RRIDDLVRVFGVSIDRGVKPD-DRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFL 540 (710)
Q Consensus 482 g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 540 (710)
|++.+|++...+.++ +.|| ..++.--..+|.-..++++|+.-|+.+.+.++++..+-
T Consensus 321 ~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~r 378 (504)
T KOG0624|consen 321 EQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAR 378 (504)
T ss_pred CCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHH
Confidence 999999999999887 5565 66888888899999999999999999999999887653
No 87
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.94 E-value=1.4e-06 Score=79.32 Aligned_cols=196 Identities=12% Similarity=0.020 Sum_probs=124.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 005178 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306 (710)
Q Consensus 227 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 306 (710)
.|.-.|...|+...|..-+++.++.... +..+|..+...|.+.|+.+.|.+.|++.+... +-+..+.|.....+|..|
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCC
Confidence 3444667777777777777777766432 45666777777777777777777777776653 344566677777777777
Q ss_pred CHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005178 307 DYDGIRYVLQEMKSLGVQP-NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385 (710)
Q Consensus 307 ~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 385 (710)
++++|...|++....-.-+ -..+|..+.-+..+.|+.+.|...|++.++.. +-...+.-.+.....+.|++-.|...+
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHHH
Confidence 7777777777776532111 23466666666667777777777777766653 222344555666666677777777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005178 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426 (710)
Q Consensus 386 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 426 (710)
+.....+. ++..+.-..|..--..|+.+.+-+.=.++.+.
T Consensus 197 ~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 197 ERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 77666554 56666666666666667766666665555543
No 88
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=6.5e-06 Score=83.96 Aligned_cols=363 Identities=13% Similarity=0.064 Sum_probs=231.5
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCc-HHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCC
Q 005178 160 ILNSLKFWQKSYFFFNWIKSQNLFPME-TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELD-NITYSTIITCAKRCNL 237 (710)
Q Consensus 160 ~l~~l~~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~li~~~~~~g~ 237 (710)
.+-.++++++|++=-...++. .|+ ...|.....++.-.|++++|+.-|.+-++. .|+ ...++-+..++....
T Consensus 45 a~a~~~~~~~al~da~k~~~l---~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~--d~~n~~L~~gl~~a~~~~~- 118 (539)
T KOG0548|consen 45 AYASLGSYEKALKDATKTRRL---NPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEK--DPSNKQLKTGLAQAYLEDY- 118 (539)
T ss_pred HHHHHhhHHHHHHHHHHHHhc---CCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhc--CCchHHHHHhHHHhhhHHH-
Confidence 345566788887766666554 344 467999999999999999999999999886 344 466677776662110
Q ss_pred HHHHHHHH------HHHHHcC---CCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHH-----HhCC------
Q 005178 238 FDEAIEWF------ERMYKTG---LMPDEVTYSAILDVYAKS----------GKVEEVLSLYERG-----VASG------ 287 (710)
Q Consensus 238 ~~~A~~~~------~~m~~~g---~~~~~~~~~~li~~~~~~----------g~~~~A~~~~~~~-----~~~g------ 287 (710)
.+.+.| ..+.... .......|..++..+-+. .++..+.-.+... ...|
T Consensus 119 --~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~ 196 (539)
T KOG0548|consen 119 --AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILAS 196 (539)
T ss_pred --HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCC
Confidence 111111 1111100 000112233333332211 0111111111100 0001
Q ss_pred -CCC------------C----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 005178 288 -WKP------------D----------PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344 (710)
Q Consensus 288 -~~~------------~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 344 (710)
..| | ..-...+.++..+..+++.|++-+....... -+..-++....+|...|.+.
T Consensus 197 ~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~ 274 (539)
T KOG0548|consen 197 MAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYA 274 (539)
T ss_pred CCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHH
Confidence 111 0 1224467777788889999999999888753 35555677788899999888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH-------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005178 345 LARSLFDEMVESGLTPDEKTLT-------ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417 (710)
Q Consensus 345 ~A~~~~~~m~~~g~~p~~~~~~-------~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 417 (710)
++...-....+.|.. ...-|+ .+..+|.+.++++.|+..|.+.......||.. .+....+++.
T Consensus 275 ~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~ 344 (539)
T KOG0548|consen 275 ECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKAL 344 (539)
T ss_pred HhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHH
Confidence 888777777666522 222222 34446777889999999999977654444322 2333445555
Q ss_pred HHHHHHHhCCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005178 418 RLFEDMKLSDYCKPDN-YSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496 (710)
Q Consensus 418 ~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 496 (710)
.......-.+ |.. .-...-.+.+.+.|++..|+..|.++++... -|...|....-+|.+.|.+..|+.-.+..++
T Consensus 345 k~~e~~a~~~---pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P-~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie 420 (539)
T KOG0548|consen 345 KEAERKAYIN---PEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDP-EDARLYSNRAACYLKLGEYPEALKDAKKCIE 420 (539)
T ss_pred HHHHHHHhhC---hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 5554444332 332 2223337778899999999999999999773 3788999999999999999999999888877
Q ss_pred CCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcC
Q 005178 497 RGVKPDDR-LCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNST 548 (710)
Q Consensus 497 ~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~ 548 (710)
. .|+.. .|.-=..++....+++.|.+.|.+..+.+|+...+.+.+.+|..
T Consensus 421 L--~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 421 L--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVE 471 (539)
T ss_pred c--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 5 44433 44444556666778899999999999999999999988887754
No 89
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.93 E-value=3.3e-08 Score=98.02 Aligned_cols=256 Identities=16% Similarity=0.154 Sum_probs=152.3
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005178 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348 (710)
Q Consensus 269 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 348 (710)
-.|++..++.-.+ .....-..+......+.++|...|+++.++ .++.... .|.......+...+...++-+.+..
T Consensus 13 y~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~ 87 (290)
T PF04733_consen 13 YLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALE 87 (290)
T ss_dssp CTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHH
T ss_pred HhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHH
Confidence 4566666665554 222111112334445666777777766433 3333322 4555555544444433344444544
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 005178 349 LFDEMVESGLTP-DEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427 (710)
Q Consensus 349 ~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 427 (710)
-+++........ +.........++...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.+
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~ 161 (290)
T PF04733_consen 88 ELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID 161 (290)
T ss_dssp HHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 444443332222 2233333334556678888888877643 256666777888888899999999988888643
Q ss_pred CCCCCHHHHHHH----HHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 005178 428 YCKPDNYSYTAM----LNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503 (710)
Q Consensus 428 ~~~~~~~~~~~l----i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 503 (710)
.|. +...+ +..+...+.+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+..+.+.. +.
T Consensus 162 ---eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~ 235 (290)
T PF04733_consen 162 ---EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DP 235 (290)
T ss_dssp ---CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HH
T ss_pred ---CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CH
Confidence 332 22233 33333345688999999997664 4568888888888899999999999998887754433 45
Q ss_pred HHHHHHHHHHHhcCCh-HHHHHHHHHHHHhCCcHHHHHH
Q 005178 504 RLCGCLLSVVSLCETS-EDVGKVITCLQQANPKLVAFLN 541 (710)
Q Consensus 504 ~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~p~~~~~~~ 541 (710)
.+...++.+....|+. +.+.+++.++....|++..+.+
T Consensus 236 d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~ 274 (290)
T PF04733_consen 236 DTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKD 274 (290)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHH
Confidence 5666777777788876 6677888888888888765543
No 90
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.93 E-value=7.9e-06 Score=85.41 Aligned_cols=304 Identities=13% Similarity=-0.007 Sum_probs=189.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005178 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGL-MPDE-VTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGK 300 (710)
Q Consensus 223 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 300 (710)
..|..+...+...|+.+.+...+.+..+... ..+. .........+...|++++|..++++..+.. +.+...+.. ..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~ 84 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hH
Confidence 4455556677777888887777776655422 2232 222333445677899999999999988763 444445543 22
Q ss_pred HHHh----cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005178 301 MFGE----SGDYDGIRYVLQEMKSLGVQPN-LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA 375 (710)
Q Consensus 301 ~~~~----~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 375 (710)
.+.. .+..+.+.+.++.. .+..|+ ......+...+...|++++|...+++..+.. +.+...+..+..+|...
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc
Confidence 3333 45555555555541 122333 3455567778899999999999999999874 44566788889999999
Q ss_pred CCHHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHH-H--HHHHHHHhCCCH
Q 005178 376 RWAKDALELWERMRENKW-PMDF--ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY-T--AMLNIYGSGGNV 449 (710)
Q Consensus 376 g~~~~A~~~~~~m~~~~~-~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~--~li~~~~~~g~~ 449 (710)
|++++|...+++..+... .++. ..|..+...+...|++++|..++++........+..... + .++.-+...|..
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 241 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV 241 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence 999999999999887532 2232 345578888999999999999999986443101222211 1 333344445544
Q ss_pred HHHHHH--HHHH-HHcCC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-------C-CHHHHHHHHHHHHhcC
Q 005178 450 DNAIEL--FEEM-SELGV-AINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK-------P-DDRLCGCLLSVVSLCE 517 (710)
Q Consensus 450 ~~A~~~--~~~m-~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-------p-~~~~~~~ll~~~~~~g 517 (710)
+.+.++ +... ..... ............++...|+.++|..+++.+...... . .........-++...|
T Consensus 242 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g 321 (355)
T cd05804 242 DVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEG 321 (355)
T ss_pred ChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcC
Confidence 433333 2111 11100 111122235667788899999999999988743211 0 1112222333456789
Q ss_pred ChHHHHHHHHHHHH
Q 005178 518 TSEDVGKVITCLQQ 531 (710)
Q Consensus 518 ~~~~a~~~~~~~~~ 531 (710)
+.++|.+.+..+..
T Consensus 322 ~~~~A~~~L~~al~ 335 (355)
T cd05804 322 NYATALELLGPVRD 335 (355)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999998887653
No 91
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.88 E-value=1.8e-07 Score=95.84 Aligned_cols=250 Identities=16% Similarity=0.109 Sum_probs=154.7
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 005178 337 MGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEA 416 (710)
Q Consensus 337 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 416 (710)
+.+.|++.+|.-.|+..+... +-+...|.-|.......++-..|+..+++..+.... |......|.-.|...|.-.+|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHH
Confidence 445666666666666666553 334556666666666666666666666666665333 555666666666666766677
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHH-------HHHHhCCCHHHHHHHHHHH-HHcCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 005178 417 ERLFEDMKLSDYCKPDNYSYTAML-------NIYGSGGNVDNAIELFEEM-SELGVAINVMGCTCLIQCLGKARRIDDLV 488 (710)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~li-------~~~~~~g~~~~A~~~~~~m-~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 488 (710)
.+.++...... ++-...-..-. ..+.....+....++|-++ .+.+..+|......|.-.|--.|.+++|+
T Consensus 373 l~~L~~Wi~~~--p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNK--PKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhC--ccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 77766665432 11100000000 0111111222333444444 34454567777777777788888888888
Q ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHHHHhccCC
Q 005178 489 RVFGVSIDRGVKP-DDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVD 567 (710)
Q Consensus 489 ~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~~~~~~ 567 (710)
+.|+.++. ++| |..+||-|...++...+.++|+..|.++.++.|.+..+...||.++...|.+.+++..|+..+...
T Consensus 451 Dcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 451 DCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 88888876 444 455888888888888888888888888888888888877777777777775555555566554322
Q ss_pred C-----------ChhhHHHHHHHHHhCCCHHHHHHH
Q 005178 568 A-----------RRPFCNCLIDICRNRNLNERAHEL 592 (710)
Q Consensus 568 ~-----------~~~~~~~l~~~~~~~g~~~~A~~~ 592 (710)
+ +..+|.+|=.++.-.++.|.+.++
T Consensus 529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 529 RKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 1 123787777777777777755433
No 92
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.87 E-value=3.2e-06 Score=89.59 Aligned_cols=240 Identities=13% Similarity=0.156 Sum_probs=131.5
Q ss_pred cHHHHHHHHH--HHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-C-------C-C
Q 005178 186 ETIFYNVTMK--SLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKT-G-------L-M 254 (710)
Q Consensus 186 ~~~~~~~li~--~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g-------~-~ 254 (710)
|..+-.++++ .|...|+.+.|.+-.+-+. +...|..|.+.|.+.++++-|.-.+-.|... | . .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 4444444543 2455566666655554443 2345666666666666555555444444321 1 0 1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005178 255 PDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLL 334 (710)
Q Consensus 255 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 334 (710)
++ .+-..+.......|.+++|+.+|.+... |..|=+.|-..|++++|.++-+.-.... =..||....
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA 865 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYA 865 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHH
Confidence 11 2222222233456677777777766654 3344455666677777776654432211 112444444
Q ss_pred HHHHHcCCHHHHHHHHHHHHH----------CC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 005178 335 EAMGKAGKPGLARSLFDEMVE----------SG---------LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPM 395 (710)
Q Consensus 335 ~~~~~~g~~~~A~~~~~~m~~----------~g---------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 395 (710)
.-+-..++.+.|++.|++.-. .. -..|...|.-....+-..|+.+.|+.+|...++
T Consensus 866 ~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----- 940 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----- 940 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----
Confidence 445555666666666653311 00 012333444444555566777777777776653
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005178 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460 (710)
Q Consensus 396 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 460 (710)
|.+++...|-.|+.++|-++-++- -|......|...|-..|++.+|..+|-++.
T Consensus 941 ----~fs~VrI~C~qGk~~kAa~iA~es-------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 941 ----YFSMVRIKCIQGKTDKAARIAEES-------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ----hhhheeeEeeccCchHHHHHHHhc-------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 556667777778888777765542 355566677788888888888888877664
No 93
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=5.1e-05 Score=78.29 Aligned_cols=213 Identities=16% Similarity=0.089 Sum_probs=129.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 005178 166 FWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245 (710)
Q Consensus 166 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 245 (710)
.+++|.+..+++.... +.|...+..-+-++.+.+.|++|+.+.+.-... ..+.+-+-.=..+.-+.+..++|+..+
T Consensus 27 e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~Dealk~~ 102 (652)
T KOG2376|consen 27 EYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKLDEALKTL 102 (652)
T ss_pred HHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccHHHHHHHH
Confidence 3899999999988763 666777888888889999999998665443221 111111111223555788999999888
Q ss_pred HHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 005178 246 ERMYKTGLMP-DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD-PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGV 323 (710)
Q Consensus 246 ~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 323 (710)
+ |+.+ +..+...-...+.+.|++++|+.+|+.+.+.+.+-- ...-..++..-. +..+ +.+.....
T Consensus 103 ~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a-------~l~~-~~~q~v~~ 169 (652)
T KOG2376|consen 103 K-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA-------ALQV-QLLQSVPE 169 (652)
T ss_pred h-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH-------hhhH-HHHHhccC
Confidence 7 3333 344666667778899999999999999987652211 111111221111 1111 11222222
Q ss_pred CCCHHHHHH---HHHHHHHcCCHHHHHHHHHHHHHCCC------CCC-HH-------HHHHHHHHHHhcCCHHHHHHHHH
Q 005178 324 QPNLVVYNT---LLEAMGKAGKPGLARSLFDEMVESGL------TPD-EK-------TLTALIKIYGKARWAKDALELWE 386 (710)
Q Consensus 324 ~p~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~------~p~-~~-------~~~~li~~~~~~g~~~~A~~~~~ 386 (710)
.| ..+|.. ..-.+...|++.+|+++++...+.+. ..+ .. .-..|..++...|+-++|..+|.
T Consensus 170 v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~ 248 (652)
T KOG2376|consen 170 VP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYV 248 (652)
T ss_pred CC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 23 223332 34456778999999999998843211 111 11 11234556778999999999999
Q ss_pred HHHhCCCCCCH
Q 005178 387 RMRENKWPMDF 397 (710)
Q Consensus 387 ~m~~~~~~~~~ 397 (710)
.++..+.. |.
T Consensus 249 ~~i~~~~~-D~ 258 (652)
T KOG2376|consen 249 DIIKRNPA-DE 258 (652)
T ss_pred HHHHhcCC-Cc
Confidence 99988655 43
No 94
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.86 E-value=3.2e-05 Score=91.73 Aligned_cols=29 Identities=10% Similarity=0.006 Sum_probs=23.3
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 005178 572 FCNCLIDICRNRNLNERAHELLYLGTLYG 600 (710)
Q Consensus 572 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 600 (710)
+...+..++.+.|+.++|.+.+.++++..
T Consensus 733 ~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 733 NLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 45567778999999999999999887554
No 95
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.84 E-value=2.1e-06 Score=89.65 Aligned_cols=343 Identities=17% Similarity=0.156 Sum_probs=193.7
Q ss_pred CCCCHHHHHHHHHhccCHHHHHHHHHHHHhC--------CCCCCcHHHH-HHHHHHHHccCChHHHHHHHHHHHHCCCCC
Q 005178 150 HQPTRENALLILNSLKFWQKSYFFFNWIKSQ--------NLFPMETIFY-NVTMKSLRFGRQFQLIEQLANEMVSNEIEL 220 (710)
Q Consensus 150 ~~~~~~~~~~~l~~l~~~~~A~~~~~~~~~~--------~~~~~~~~~~-~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 220 (710)
.....+.+-.++..+++++.|++.|++-..- ..+|..++.. ..-...+...|+++.|..-|-+..
T Consensus 660 k~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~------ 733 (1636)
T KOG3616|consen 660 KGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN------ 733 (1636)
T ss_pred hhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh------
Confidence 3334445555666666777777666531110 0022222111 112223344455555544443221
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005178 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGK 300 (710)
Q Consensus 221 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 300 (710)
...-.|.+......|.+|+.+++.+.... .-..-|..+.+-|...|+++-|.++|-+.- .++-.|.
T Consensus 734 ---~~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~ 799 (1636)
T KOG3616|consen 734 ---CLIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAID 799 (1636)
T ss_pred ---hHHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHH
Confidence 11223345566778888888888777652 234457777888888999999988886542 3566788
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 005178 301 MFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380 (710)
Q Consensus 301 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 380 (710)
+|.+.|+|++|.++-++.. |.+.....|.+-..-+-+.|++.+|.++|-.+. .|+. .|.+|-+.|..++
T Consensus 800 my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~dd 868 (1636)
T KOG3616|consen 800 MYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDD 868 (1636)
T ss_pred HHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchH
Confidence 8999999999988877664 334455567666777778888888888775443 3443 4667778888887
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005178 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460 (710)
Q Consensus 381 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 460 (710)
.+++..+-... .-..|...+..-|-..|++..|+.-|-+..+ |.+-+++|-..+.+++|.++-+.--
T Consensus 869 mirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d----------~kaavnmyk~s~lw~dayriakteg 935 (1636)
T KOG3616|consen 869 MIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD----------FKAAVNMYKASELWEDAYRIAKTEG 935 (1636)
T ss_pred HHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh----------HHHHHHHhhhhhhHHHHHHHHhccc
Confidence 77776654321 1123455566677778888888777655432 4556677777777777766643210
Q ss_pred HcCCC-cCHHHHH------HHHHHHHhcC-------------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 005178 461 ELGVA-INVMGCT------CLIQCLGKAR-------------RIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSE 520 (710)
Q Consensus 461 ~~~~~-p~~~~~~------~li~~~~~~g-------------~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 520 (710)
..+.. .-...|. +.+..+-++| .++-|.++-+-..+. -.|.. ...+...+...|+++
T Consensus 936 g~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~-k~~~v--hlk~a~~ledegk~e 1012 (1636)
T KOG3616|consen 936 GANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKD-KMGEV--HLKLAMFLEDEGKFE 1012 (1636)
T ss_pred cccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhc-cCccc--hhHHhhhhhhccchh
Confidence 00000 0001111 1122223333 344444443333222 12222 223344456788888
Q ss_pred HHHHHHHHHHHhCCcHHHH
Q 005178 521 DVGKVITCLQQANPKLVAF 539 (710)
Q Consensus 521 ~a~~~~~~~~~~~p~~~~~ 539 (710)
+|-+-|-++.+++.-+.++
T Consensus 1013 daskhyveaiklntynitw 1031 (1636)
T KOG3616|consen 1013 DASKHYVEAIKLNTYNITW 1031 (1636)
T ss_pred hhhHhhHHHhhcccccchh
Confidence 8888887777766554443
No 96
>PLN02789 farnesyltranstransferase
Probab=98.82 E-value=3.2e-06 Score=85.05 Aligned_cols=204 Identities=12% Similarity=0.047 Sum_probs=112.5
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCH--H
Q 005178 374 KARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG-LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNV--D 450 (710)
Q Consensus 374 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~ 450 (710)
..+..++|+.+..++++.+.. +..+|+.--.++...| ++++++..++++.+.+ +.+..+|+.....+.+.|+. +
T Consensus 49 ~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n--pknyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 49 SDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN--PKNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred cCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC--CcchHHhHHHHHHHHHcCchhhH
Confidence 345556666666666654322 3334444444444555 4566677766666655 45555666555555555542 5
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CC----hHHHH
Q 005178 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLC---ET----SEDVG 523 (710)
Q Consensus 451 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~---g~----~~~a~ 523 (710)
++..+++++++.+.+ |..+|+....++.+.|+++++++.++++++.+.. |...|+....++.+. |. .+++.
T Consensus 126 ~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 126 KELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred HHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHH
Confidence 566666666665443 6666766666666777777777777777765544 444555554444433 21 23556
Q ss_pred HHHHHHHHhCCcHHHHHHHHHhhcCCccc---HHHHHHHHHHh-ccCCCCh-hhHHHHHHHHHh
Q 005178 524 KVITCLQQANPKLVAFLNLIEDNSTGFEN---IKEEFRNVIKD-TEVDARR-PFCNCLIDICRN 582 (710)
Q Consensus 524 ~~~~~~~~~~p~~~~~~~~L~~~~~~~~~---~~~~a~~~~~~-~~~~~~~-~~~~~l~~~~~~ 582 (710)
.+..++...+|++..++..++..+...+. ...++.++... ...+|.. .....|++.|+.
T Consensus 204 ~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 204 KYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 66667777777777766666554433111 11234444333 2334432 255667777664
No 97
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.81 E-value=2.4e-05 Score=83.24 Aligned_cols=381 Identities=13% Similarity=0.115 Sum_probs=232.2
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHC-C--------CCCCHHHHHHHHHHHHH
Q 005178 164 LKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSN-E--------IELDNITYSTIITCAKR 234 (710)
Q Consensus 164 l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g--------~~p~~~~~~~li~~~~~ 234 (710)
.++.+.|......+. +-.+|..|.+++.+..+++-|.-.+-.|... | -.++ .+=.-+......
T Consensus 741 iG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAie 812 (1416)
T KOG3617|consen 741 IGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIE 812 (1416)
T ss_pred eccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHH
Confidence 456777766665543 4468999999999999999888777766432 1 1122 222222233456
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005178 235 CNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYV 314 (710)
Q Consensus 235 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 314 (710)
.|.+++|+.+|.+-++. ..|-..|...|.+++|.++-+.--.-. =..||.....-+-..++.+.|++.
T Consensus 813 LgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~Aley 880 (1416)
T KOG3617|consen 813 LGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEY 880 (1416)
T ss_pred HhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHH
Confidence 79999999999888763 445567788999999998876533221 124555566666677888888887
Q ss_pred HHHH----------HHCC---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005178 315 LQEM----------KSLG---------VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA 375 (710)
Q Consensus 315 ~~~m----------~~~g---------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 375 (710)
|++. +... -..|...|.-....+-..|+.+.|+.+|....+ |-+++...|-.
T Consensus 881 yEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~q 951 (1416)
T KOG3617|consen 881 YEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQ 951 (1416)
T ss_pred HHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeec
Confidence 7652 2111 112444455555555667899999999887763 56788888889
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC----CC-CCHHHHHHHHHHHHh--CCC
Q 005178 376 RWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY----CK-PDNYSYTAMLNIYGS--GGN 448 (710)
Q Consensus 376 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~-~~~~~~~~li~~~~~--~g~ 448 (710)
|+.++|-++-++-. |......|...|-+.|++.+|..+|.+...-.. |+ .|. -..|.+.+.. ..+
T Consensus 952 Gk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~--~d~L~nlal~s~~~d 1023 (1416)
T KOG3617|consen 952 GKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDM--KDRLANLALMSGGSD 1023 (1416)
T ss_pred cCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHhhcCchh
Confidence 99999998877643 667788899999999999999999987653110 00 000 0122222222 223
Q ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHC--CCCCCHHHHHHHHHHHHhcCC
Q 005178 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFG--------VSIDR--GVKPDDRLCGCLLSVVSLCET 518 (710)
Q Consensus 449 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~--~~~p~~~~~~~ll~~~~~~g~ 518 (710)
.-.|-++|++.- .. +..-+..|-++|.+.+|+++-= +++.. ...-|+...+.-...+....+
T Consensus 1024 ~v~aArYyEe~g---~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~q 1095 (1416)
T KOG3617|consen 1024 LVSAARYYEELG---GY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQ 1095 (1416)
T ss_pred HHHHHHHHHHcc---hh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHH
Confidence 344555555432 11 1223345778888888776521 12222 233356666666777777888
Q ss_pred hHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHHHHhcc-CCCC----hhhHHHHHHHHHhCCCHHHHHHHH
Q 005178 519 SEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTE-VDAR----RPFCNCLIDICRNRNLNERAHELL 593 (710)
Q Consensus 519 ~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~A~~~~ 593 (710)
++.|..++-...+. -..|+-|..+.-...++..+++.--. ..|+ ..+...+.+.|.++|.+..|-+=|
T Consensus 1096 yekAV~lL~~ar~~-------~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKf 1168 (1416)
T KOG3617|consen 1096 YEKAVNLLCLAREF-------SGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKF 1168 (1416)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 88888877665432 22333332222223334333332111 1222 226677888899999888775544
Q ss_pred HHH
Q 005178 594 YLG 596 (710)
Q Consensus 594 ~~~ 596 (710)
-++
T Consensus 1169 TQA 1171 (1416)
T KOG3617|consen 1169 TQA 1171 (1416)
T ss_pred hhh
Confidence 443
No 98
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.81 E-value=4.2e-05 Score=90.75 Aligned_cols=337 Identities=14% Similarity=0.019 Sum_probs=188.4
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------CCC--HHHHHHHHHHHH
Q 005178 197 LRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGL------MPD--EVTYSAILDVYA 268 (710)
Q Consensus 197 ~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------~~~--~~~~~~li~~~~ 268 (710)
+...|+++.+...++.+.......+..........+...|++++|..++......-- .+. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 344566666666555542110111122222233345567888888888877654310 011 112222334456
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHH
Q 005178 269 KSGKVEEVLSLYERGVASGWKPD----PIAFSVLGKMFGESGDYDGIRYVLQEMKSL----GV-QPNLVVYNTLLEAMGK 339 (710)
Q Consensus 269 ~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~~~~~li~~~~~ 339 (710)
..|++++|...+++....--..+ ....+.+...+...|++++|...+++.... |. .....++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 77888888888887765311111 123455666677788888888888777642 11 0112344556667778
Q ss_pred cCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCC--CHHHHHHHHHHHH
Q 005178 340 AGKPGLARSLFDEMVES----GLT--P-DEKTLTALIKIYGKARWAKDALELWERMRENK--WPM--DFILYNTLLNMCA 408 (710)
Q Consensus 340 ~g~~~~A~~~~~~m~~~----g~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~--~~~~~~~li~~~~ 408 (710)
.|++++|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 88888888887776542 211 1 12234445556667788888888877765421 111 1233444556677
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCCHHHH-----HHHHHHHHhCCCHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHHHh
Q 005178 409 DIGLVEEAERLFEDMKLSDYCKPDNYSY-----TAMLNIYGSGGNVDNAIELFEEMSELGVAIN---VMGCTCLIQCLGK 480 (710)
Q Consensus 409 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~ 480 (710)
..|+.++|.+.+.+.............+ ...+..+...|+.+.|..++........... ...+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 7888888888877765421100111111 1122344557888888888766544211111 1113456667778
Q ss_pred cCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHhC
Q 005178 481 ARRIDDLVRVFGVSIDR----GVKPDD-RLCGCLLSVVSLCETSEDVGKVITCLQQAN 533 (710)
Q Consensus 481 ~g~~~~A~~~~~~m~~~----~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 533 (710)
.|++++|...+++.... |...+. .+...+..++...|+.++|...+.++.+..
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 88888888888877642 322222 245566667778888888888888877654
No 99
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.78 E-value=1.1e-05 Score=84.42 Aligned_cols=46 Identities=15% Similarity=0.115 Sum_probs=26.0
Q ss_pred HHHHHHHhcc-CHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHH
Q 005178 156 NALLILNSLK-FWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLAN 211 (710)
Q Consensus 156 ~~~~~l~~l~-~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 211 (710)
.+...+.-+. ++.+|..+|-. ++ + -...|.+|....+|++|+.+-+
T Consensus 535 kvra~lail~kkfk~ae~ifle---qn----~---te~aigmy~~lhkwde~i~lae 581 (1636)
T KOG3616|consen 535 KVRAMLAILEKKFKEAEMIFLE---QN----A---TEEAIGMYQELHKWDEAIALAE 581 (1636)
T ss_pred HHHHHHHHHHhhhhHHHHHHHh---cc----c---HHHHHHHHHHHHhHHHHHHHHH
Confidence 3444444444 36777666532 11 1 2345677777788888877653
No 100
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.78 E-value=1.9e-05 Score=85.96 Aligned_cols=177 Identities=10% Similarity=0.039 Sum_probs=116.9
Q ss_pred HHHHHHHhhCCCCCCHHHHHH----HHHhccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 005178 139 EAFLRAITEIPHQPTRENALL----ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMV 214 (710)
Q Consensus 139 ~~~~~~l~~~~~~~~~~~~~~----~l~~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 214 (710)
.++..+++++...+...-+.. ++....+...|.+.|+.+.+.. ..|...+....+.|++..+++.|..+.-..-
T Consensus 476 ~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD--atdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 476 LALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD--ATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 344455555544443332222 2333334677888888887653 4577888889999999999999988843332
Q ss_pred HCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-
Q 005178 215 SNEI-ELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP- 292 (710)
Q Consensus 215 ~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~- 292 (710)
+... ..-..-|...--.|...++...|+..|+...+..+. |...|..++.+|.+.|++..|+++|.+.... .|+.
T Consensus 554 qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s~ 630 (1238)
T KOG1127|consen 554 QKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLSK 630 (1238)
T ss_pred hhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHhH
Confidence 2210 001122333333677788899999999988887654 7889999999999999999999999888764 3432
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005178 293 IAFSVLGKMFGESGDYDGIRYVLQEMKS 320 (710)
Q Consensus 293 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 320 (710)
..---...+.+..|.+.+|...+.....
T Consensus 631 y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 631 YGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 2222233345677888888888877654
No 101
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.78 E-value=4.6e-06 Score=93.47 Aligned_cols=225 Identities=13% Similarity=0.058 Sum_probs=170.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 005178 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP-----NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363 (710)
Q Consensus 289 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 363 (710)
+-+...|-..|......++.++|++++++.+.. +.+ -.-.|.++++.-..-|.-+...++|+++.+. .....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHH
Confidence 334667888888888899999999999888753 111 1235777777777777788888889888875 22355
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 005178 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIY 443 (710)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~ 443 (710)
.|..|...|.+.+.+++|.++|+.|.++ +......|...++.+.+..+-+.|..++.+..+.-.-.-......-.++.-
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 7888889999999999999999999876 334677888888888888888899999988877531112455566677777
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCC
Q 005178 444 GSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR--LCGCLLSVVSLCET 518 (710)
Q Consensus 444 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~g~ 518 (710)
.+.|+.+.+..+|+.......+ -...|+.+|+.-.++|+.+.+..+|++.+..++.|... .|.-.+..-.+.|+
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCc
Confidence 8899999999999988875433 56789999999999999999999999999888876543 55566665555666
No 102
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.76 E-value=6.4e-07 Score=88.89 Aligned_cols=248 Identities=17% Similarity=0.169 Sum_probs=116.1
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 005178 197 LRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV 276 (710)
Q Consensus 197 ~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 276 (710)
+.-.|++..++.-.+ .....-..+......+.+++...|+.+.++ .++.... .|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 344566666654443 111111112233334445666666655433 2222221 44444444443333322344444
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005178 277 LSLYERGVASGWKP-DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVE 355 (710)
Q Consensus 277 ~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 355 (710)
+.-+++........ +.........++...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444433322221 2222222333455566666666666542 2445555566666666666666666666665
Q ss_pred CCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 005178 356 SGLTPDEKTLTALIKIYGK----ARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431 (710)
Q Consensus 356 ~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 431 (710)
.+ .|. +...+..++.. .+.+.+|..+|+++.+. ..++..+.+.+.-++...|++++|++++.+....+ +.
T Consensus 160 ~~--eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~--~~ 233 (290)
T PF04733_consen 160 ID--EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD--PN 233 (290)
T ss_dssp CS--CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---CC
T ss_pred cC--CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--cC
Confidence 42 232 22233333322 22466666666665543 44456666666666666666666666666655444 34
Q ss_pred CHHHHHHHHHHHHhCCCH-HHHHHHHHHHHH
Q 005178 432 DNYSYTAMLNIYGSGGNV-DNAIELFEEMSE 461 (710)
Q Consensus 432 ~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~ 461 (710)
+..+...++.+....|+. +.+.+++.++..
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 555555566655555555 445555555554
No 103
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.76 E-value=7.7e-06 Score=88.86 Aligned_cols=384 Identities=11% Similarity=-0.038 Sum_probs=236.3
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005178 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQ 316 (710)
Q Consensus 237 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 316 (710)
+...|...|-+..+..+. =...|..|...|+..-+...|.+.|+...+.+ .-+...+....+.|++..++++|..+.-
T Consensus 473 ~~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 356666666665554221 25678889999988888999999999998764 4467788889999999999999999844
Q ss_pred HHHHCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 005178 317 EMKSLGVQPNL--VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWP 394 (710)
Q Consensus 317 ~m~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 394 (710)
..-+.. +.-. ..|....-.|.+.++...|+.-|+...+.. +.|...|..+..+|...|++..|+++|.+.......
T Consensus 551 ~~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~ 628 (1238)
T KOG1127|consen 551 RAAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL 628 (1238)
T ss_pred HHhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH
Confidence 333321 0111 123334455677889999999999888764 457788999999999999999999999988765322
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-----CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-------Hc
Q 005178 395 MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC-----KPDNYSYTAMLNIYGSGGNVDNAIELFEEMS-------EL 462 (710)
Q Consensus 395 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-------~~ 462 (710)
+...-.-..-+.+..|.+.+|...+..+...... .--..++..+...+...|-...|..+++.-+ ..
T Consensus 629 -s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 629 -SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH 707 (1238)
T ss_pred -hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 2222222334456789999999888877653210 0112233333333333343334444433332 22
Q ss_pred CCCcCHHHHHHHHHHHH-----------------------hcCCH---H---HHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005178 463 GVAINVMGCTCLIQCLG-----------------------KARRI---D---DLVRVFGVSIDRGVKPDDRLCGCLLSVV 513 (710)
Q Consensus 463 ~~~p~~~~~~~li~~~~-----------------------~~g~~---~---~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 513 (710)
...-+...|-.+.++|. ..+.. | -+.+.+-.-+. ..-+..+|..++..|
T Consensus 708 ~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGiny 785 (1238)
T KOG1127|consen 708 SLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINY 785 (1238)
T ss_pred hhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHH
Confidence 21223333333322221 11111 1 01111111111 111233454454444
Q ss_pred Hh----c----CChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHHHHhccCCCChh-hHHHHHHHHHhCC
Q 005178 514 SL----C----ETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRP-FCNCLIDICRNRN 584 (710)
Q Consensus 514 ~~----~----g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~l~~~~~~~g 584 (710)
.+ + .+...|+..+++..++..++..+++.||.. ...|+..-.-+.+++..-.+|... .|-.++-.|.+..
T Consensus 786 lr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~ 864 (1238)
T KOG1127|consen 786 LRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQ 864 (1238)
T ss_pred HHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecc
Confidence 33 2 222467788888888999999999999876 444656666777888876666544 8888999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCcccccccccchhccccc-ChHHHHHHHHHHHH
Q 005178 585 LNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSL-SVGAAQTALEEWMW 634 (710)
Q Consensus 585 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~-~~G~~~~Al~~~~~ 634 (710)
+++-|...|..... +.+.+...|-..-... .+|...+++..|-.
T Consensus 865 d~E~A~~af~~~qS------LdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 865 DFEHAEPAFSSVQS------LDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred cHHHhhHHHHhhhh------cCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 99999999998652 2333556776432222 35766676666655
No 104
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.72 E-value=9.5e-05 Score=80.52 Aligned_cols=358 Identities=13% Similarity=0.076 Sum_probs=187.9
Q ss_pred CcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 005178 185 METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEI--ELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSA 262 (710)
Q Consensus 185 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 262 (710)
.|+..-...+.++...+-+.+-+++++++.-... .-+...-|.||-...+ -+..+..+..+++-.... |+
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa-~~------ 1053 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDA-PD------ 1053 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCc-hh------
Confidence 4555566677777777777777888777764321 1112222333333332 344555666665543321 11
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 005178 263 ILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342 (710)
Q Consensus 263 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 342 (710)
+...+...+-+++|..+|+..- .+....+.||.- .+.++.|.+.-++.. ....|..+..+-.+.|.
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~ 1119 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGL 1119 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCc
Confidence 2334445566677777766542 344444444432 344555555444432 34456666666666666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005178 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED 422 (710)
Q Consensus 343 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 422 (710)
..+|++-|-+. .|...|..++....+.|.+++-.+++...+++...|.+. ..||-+|++.+++.+.++++.
T Consensus 1120 v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~- 1190 (1666)
T KOG0985|consen 1120 VKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA- 1190 (1666)
T ss_pred hHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-
Confidence 66666555332 244556666666666666666666666665554444432 346666666666655554421
Q ss_pred HHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH---------
Q 005178 423 MKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGV--------- 493 (710)
Q Consensus 423 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~--------- 493 (710)
.||..-...+.+-|...|.++.|.-+|. ++.-|..|...+...|.+..|...-++
T Consensus 1191 -------gpN~A~i~~vGdrcf~~~~y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~ 1254 (1666)
T KOG0985|consen 1191 -------GPNVANIQQVGDRCFEEKMYEAAKLLYS---------NVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKE 1254 (1666)
T ss_pred -------CCCchhHHHHhHHHhhhhhhHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHH
Confidence 2455555555555555555555555443 222333444444444444433332222
Q ss_pred ---------------HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCc--ccHHHH
Q 005178 494 ---------------SIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGF--ENIKEE 556 (710)
Q Consensus 494 ---------------m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~--~~~~~~ 556 (710)
|...++.....-...++..|...|.+++.+.+++...++..-+-.+..-|+-.|.+. ....+-
T Consensus 1255 VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskykp~km~EH 1334 (1666)
T KOG0985|consen 1255 VCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYKPEKMMEH 1334 (1666)
T ss_pred HHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 222223334445666778888888888888888888777666665665555443322 111122
Q ss_pred HHHHHHhccCC------CChhhHHHHHHHHHhCCCHHHH
Q 005178 557 FRNVIKDTEVD------ARRPFCNCLIDICRNRNLNERA 589 (710)
Q Consensus 557 a~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A 589 (710)
.+-+..+..+. -....|+-|+-.|.+-..++.|
T Consensus 1335 l~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNA 1373 (1666)
T KOG0985|consen 1335 LKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNA 1373 (1666)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 22222222211 0122577777777776666655
No 105
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.72 E-value=7.9e-05 Score=71.69 Aligned_cols=302 Identities=14% Similarity=0.129 Sum_probs=200.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH---HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-H
Q 005178 255 PDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL---GKMFGESGDYDGIRYVLQEMKSLGVQPNLVV-Y 330 (710)
Q Consensus 255 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~ 330 (710)
.++.-..-+...+...|++..|+.-|...++. |+..|.++ ...|...|+-.-|+.=+..+++. +||-.. -
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~AR 109 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAAR 109 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHH
Confidence 35556667888888999999999999998874 44444444 45788889999999999998875 677653 2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHH------------HHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 005178 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDE----KTL------------TALIKIYGKARWAKDALELWERMRENKWP 394 (710)
Q Consensus 331 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~------------~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 394 (710)
..-...+.+.|.+++|..-|+.+++.. |+. ..+ ...+..+.-.|+...|+.....+++. .+
T Consensus 110 iQRg~vllK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~ 186 (504)
T KOG0624|consen 110 IQRGVVLLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QP 186 (504)
T ss_pred HHhchhhhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-Cc
Confidence 334556789999999999999998763 321 111 22344556678888888888888886 34
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHH---
Q 005178 395 MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC--- 471 (710)
Q Consensus 395 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~--- 471 (710)
.|...|..-..+|...|.+..|+.=+....+.. ..+..++.-+-..+...|+.+.++...++-++ +.||....
T Consensus 187 Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs--~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~ 262 (504)
T KOG0624|consen 187 WDASLRQARAKCYIAEGEPKKAIHDLKQASKLS--QDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPF 262 (504)
T ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc--ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHH
Confidence 477788888888888888888888877777665 46677777777888888888888888888877 34554322
Q ss_pred -HHH---HHHH------HhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHH
Q 005178 472 -TCL---IQCL------GKARRIDDLVRVFGVSIDRGVKPDDR---LCGCLLSVVSLCETSEDVGKVITCLQQANPKLVA 538 (710)
Q Consensus 472 -~~l---i~~~------~~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 538 (710)
-.| ...+ ...+++.+++...+..++....-..+ .+..+-.++...|++.+|++.-.++.+++|++..
T Consensus 263 YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~ 342 (504)
T KOG0624|consen 263 YKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQ 342 (504)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHH
Confidence 211 2111 23455666666666665543321122 3334445666677778888877778888887766
Q ss_pred HHHHHHhhcCCcccHHHHHHHHHHhccCCCC
Q 005178 539 FLNLIEDNSTGFENIKEEFRNVIKDTEVDAR 569 (710)
Q Consensus 539 ~~~~L~~~~~~~~~~~~~a~~~~~~~~~~~~ 569 (710)
++---+.++...+.+.++++.+-+....+++
T Consensus 343 ~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 343 VLCDRAEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 5533333333333233444444444444443
No 106
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.72 E-value=5.7e-05 Score=71.22 Aligned_cols=323 Identities=13% Similarity=0.077 Sum_probs=207.9
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHHc
Q 005178 157 ALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTII-TCAKRC 235 (710)
Q Consensus 157 ~~~~l~~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li-~~~~~~ 235 (710)
++.-+-.=.++.+|++++....+.. +.+......+..+|-...++..|-..++++... .|...-|...- ..+-+.
T Consensus 16 viy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 16 VVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKA 91 (459)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHh
Confidence 3333344456888888887776653 447777788888889999999999999998875 45555554433 366678
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005178 236 NLFDEAIEWFERMYKTGLMPDEVTYSAILDV--YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRY 313 (710)
Q Consensus 236 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 313 (710)
+.+.+|+.+...|... ++...-..-+.+ ....+++..+..+.++....| +..+.+...-...+.|+++.|.+
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHH
Confidence 8899999998887652 222211111222 234678888888888877533 45555555666778999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-------------CHH--------HHHHHH---
Q 005178 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTP-------------DEK--------TLTALI--- 369 (710)
Q Consensus 314 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-------------~~~--------~~~~li--- 369 (710)
-|+...+-|---....||.- -+..+.|+++.|++...++++.|++. |.. .-+.++
T Consensus 166 kFqaAlqvsGyqpllAYniA-LaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAf 244 (459)
T KOG4340|consen 166 KFQAALQVSGYQPLLAYNLA-LAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAF 244 (459)
T ss_pred HHHHHHhhcCCCchhHHHHH-HHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHh
Confidence 99998885433345677754 45567889999999999998877531 211 112233
Q ss_pred ----HHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 005178 370 ----KIYGKARWAKDALELWERMREN-KWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYG 444 (710)
Q Consensus 370 ----~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~ 444 (710)
..+.+.|+++.|.+-+-.|.-+ ....|++|...+.-.-+ .+++.+..+-+.-+...+ +-...||..++-.||
T Consensus 245 NLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~n--PfP~ETFANlLllyC 321 (459)
T KOG4340|consen 245 NLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQN--PFPPETFANLLLLYC 321 (459)
T ss_pred hhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcC--CCChHHHHHHHHHHh
Confidence 3456788999998888887533 23457777766543322 344555555555555555 455678999999999
Q ss_pred hCCCHHHHHHHHHHHHHcCCC-cCHHHHHHHHHHHH-hcCCHHHHHHHHHHH
Q 005178 445 SGGNVDNAIELFEEMSELGVA-INVMGCTCLIQCLG-KARRIDDLVRVFGVS 494 (710)
Q Consensus 445 ~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~-~~g~~~~A~~~~~~m 494 (710)
+..-++.|-.++.+-...-.+ .+...|+. +.++. ..-..++|++-++.+
T Consensus 322 KNeyf~lAADvLAEn~~lTyk~L~~Yly~L-LdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 322 KNEYFDLAADVLAENAHLTYKFLTPYLYDL-LDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred hhHHHhHHHHHHhhCcchhHHHhhHHHHHH-HHHHHhCCCCHHHHHHHHHHH
Confidence 999999999888764321111 13333433 33332 334556666555544
No 107
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.71 E-value=8.3e-07 Score=91.03 Aligned_cols=218 Identities=12% Similarity=0.026 Sum_probs=164.7
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHH
Q 005178 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDN 451 (710)
Q Consensus 372 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 451 (710)
+.+.|++.+|.-.|+..+..+.. +...|..|...-+..++-..|+..+.+..+.. +.|....-.|.-.|...|.-.+
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld--P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD--PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC--CccHHHHHHHHHHHhhhhhHHH
Confidence 56789999999999999887554 78889999888899999999999999999887 6788999999999999999999
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHH-----------HHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCh
Q 005178 452 AIELFEEMSELGVAINVMGCTCLI-----------QCLGKARRIDDLVRVFGVSI-DRGVKPDDRLCGCLLSVVSLCETS 519 (710)
Q Consensus 452 A~~~~~~m~~~~~~p~~~~~~~li-----------~~~~~~g~~~~A~~~~~~m~-~~~~~p~~~~~~~ll~~~~~~g~~ 519 (710)
|+..++.-+...++ |..+. ..+..........++|-++. ..+..+|..+..+|.-.|.-.|.+
T Consensus 372 Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred HHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 99999988663321 00000 01111222334455555554 566567888888899899999999
Q ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHHHHhccCCCChh-hHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005178 520 EDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRP-FCNCLIDICRNRNLNERAHELLYLGT 597 (710)
Q Consensus 520 ~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~ 597 (710)
++|+..|+.+...+|++..+++-||..++......+++..|-+.+..+|.-. ++..|+-.|...|.+++|.+.|-.++
T Consensus 447 draiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 447 DRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 9999999999999999999999998877754433333444445567777644 66677778888888888887776665
No 108
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.69 E-value=1.5e-05 Score=89.50 Aligned_cols=240 Identities=15% Similarity=0.149 Sum_probs=184.2
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005178 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD-----PIAFSVLGKMFGESGDYDGIRYVLQEMK 319 (710)
Q Consensus 245 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~ 319 (710)
|++..... +-....|...|......++.++|.+++++++.. +.+. ...|.++++.-...|.-+...++|+++.
T Consensus 1447 ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc 1524 (1710)
T KOG1070|consen 1447 FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC 1524 (1710)
T ss_pred HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH
Confidence 44444442 224667899999999999999999999998864 2221 3467788888888888899999999998
Q ss_pred HCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CH
Q 005178 320 SLGVQPN-LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPM-DF 397 (710)
Q Consensus 320 ~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~ 397 (710)
+. -| ...|..|...|.+.+.+++|.++|+.|.+. +.-....|...+..+.+.++-+.|..++.+..+.=.+- ..
T Consensus 1525 qy---cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv 1600 (1710)
T KOG1070|consen 1525 QY---CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHV 1600 (1710)
T ss_pred Hh---cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhH
Confidence 85 24 346889999999999999999999999875 23467789999999999999999999999988652221 23
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcC--HHHHHHHH
Q 005178 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN--VMGCTCLI 475 (710)
Q Consensus 398 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li 475 (710)
....-.++.-.+.|+.+.+..+|+...... |.-...|+.+|++-.++|+.+.+..+|++.+..++.|- -..|...+
T Consensus 1601 ~~IskfAqLEFk~GDaeRGRtlfEgll~ay--PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwL 1678 (1710)
T KOG1070|consen 1601 EFISKFAQLEFKYGDAERGRTLFEGLLSAY--PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWL 1678 (1710)
T ss_pred HHHHHHHHHHhhcCCchhhHHHHHHHHhhC--ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHH
Confidence 345556667778999999999999998776 56778999999999999999999999999999877654 23455555
Q ss_pred HHHHhcCCHHHHHHHHH
Q 005178 476 QCLGKARRIDDLVRVFG 492 (710)
Q Consensus 476 ~~~~~~g~~~~A~~~~~ 492 (710)
..--.+|+-..+..+=.
T Consensus 1679 eyEk~~Gde~~vE~VKa 1695 (1710)
T KOG1070|consen 1679 EYEKSHGDEKNVEYVKA 1695 (1710)
T ss_pred HHHHhcCchhhHHHHHH
Confidence 55555566554444433
No 109
>PLN02789 farnesyltranstransferase
Probab=98.68 E-value=1.6e-05 Score=79.93 Aligned_cols=204 Identities=10% Similarity=0.049 Sum_probs=124.6
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH--HH
Q 005178 339 KAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR-WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV--EE 415 (710)
Q Consensus 339 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~--~~ 415 (710)
..++.++|+.++.++++.. +-+..+|+.-..++...| ++++++..++++.+.+.+ +..+|+.-...+.+.|.. ++
T Consensus 49 ~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 49 SDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred cCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHH
Confidence 3455566666666666542 222334444444444455 456777777766665443 444555444444455542 56
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc---CCH----HHHH
Q 005178 416 AERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA---RRI----DDLV 488 (710)
Q Consensus 416 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~----~~A~ 488 (710)
+..+++.+.+.+ +.|..+|+....++...|+++++++.++++++.++. |...|+.....+.+. |.. ++++
T Consensus 127 el~~~~kal~~d--pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 127 ELEFTRKILSLD--AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred HHHHHHHHHHhC--cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHH
Confidence 677777777666 567777777777777777777888888877776654 566666665555443 222 4566
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhc----CChHHHHHHHHHHHHhCCcHHHHHHHHHhhcC
Q 005178 489 RVFGVSIDRGVKPDDRLCGCLLSVVSLC----ETSEDVGKVITCLQQANPKLVAFLNLIEDNST 548 (710)
Q Consensus 489 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~ 548 (710)
.+..+++..... |...|+.+..++... +...+|.+.+.++.+.+|+...++..|...+.
T Consensus 204 ~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~ 266 (320)
T PLN02789 204 KYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLC 266 (320)
T ss_pred HHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHH
Confidence 666666664332 455777777777662 33456777777777778887777777766543
No 110
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.63 E-value=2.4e-06 Score=90.02 Aligned_cols=221 Identities=13% Similarity=0.070 Sum_probs=179.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005178 290 PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369 (710)
Q Consensus 290 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 369 (710)
|-...-..+...+...|-...|..+|+++. .|..+|.+|+..|+.++|..+..+..+. +||...|..+.
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LG 464 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLG 464 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhh
Confidence 333444567788889999999999998864 4667889999999999999999888874 78999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCH
Q 005178 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNV 449 (710)
Q Consensus 370 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 449 (710)
+......-+++|.++++....+ .-..+.......++++++.+.|+.-.+.+ +--..+|-.+..+..+.+++
T Consensus 465 Dv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n--plq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN--PLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC--ccchhHHHhccHHHHHHhhh
Confidence 8888888889999998876543 11222222334789999999999988876 56778999999999999999
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 005178 450 DNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCL 529 (710)
Q Consensus 450 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 529 (710)
..|.+.|.......+. +...||.+-.+|.+.|+-.+|...+++..+.+.. +..+|...+-....-|.+++|.+.+.++
T Consensus 536 q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 9999999988874322 5788999999999999999999999999988744 4556777777788999999999999988
Q ss_pred HHh
Q 005178 530 QQA 532 (710)
Q Consensus 530 ~~~ 532 (710)
..+
T Consensus 614 l~~ 616 (777)
T KOG1128|consen 614 LDL 616 (777)
T ss_pred HHh
Confidence 654
No 111
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.60 E-value=0.0012 Score=67.77 Aligned_cols=115 Identities=11% Similarity=0.226 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-HcCCHHH----H
Q 005178 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK-RCNLFDE----A 241 (710)
Q Consensus 167 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~-~~g~~~~----A 241 (710)
+++++..++.+... ++.....|..-|..-.+..+++..+++|.+.+.. ..+...|..-|.--. ..|+... .
T Consensus 35 ~~~~R~~YEq~~~~--FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lYl~YVR~~~~~~~~~r~~m 110 (656)
T KOG1914|consen 35 IDKVRETYEQLVNV--FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLYLSYVRETKGKLFGYREKM 110 (656)
T ss_pred HHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHHHHHHHHHccCcchHHHHH
Confidence 55566666766554 5666777888888888888888888888887765 235666766665222 2333332 2
Q ss_pred HHHHHHHH-HcCCCC-CHHHHHHHHHH---------HHHcCCHHHHHHHHHHHHh
Q 005178 242 IEWFERMY-KTGLMP-DEVTYSAILDV---------YAKSGKVEEVLSLYERGVA 285 (710)
Q Consensus 242 ~~~~~~m~-~~g~~~-~~~~~~~li~~---------~~~~g~~~~A~~~~~~~~~ 285 (710)
.+.|+-.. +.|+.+ +-..|+..+.. |....+++...++|.+++.
T Consensus 111 ~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 111 VQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 23333333 234333 23345555443 3334456667777777765
No 112
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=0.0016 Score=71.36 Aligned_cols=141 Identities=13% Similarity=0.181 Sum_probs=91.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005178 256 DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLE 335 (710)
Q Consensus 256 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 335 (710)
...+|..+..+-.+.|.+.+|++-|-+. .|+..|..++....+.|.|++-.+.+...++..-+|...+ .||-
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~ 1174 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIF 1174 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHH
Confidence 4456777777777777777777666443 3666777777777788888877777777766554554443 5777
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 005178 336 AMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEE 415 (710)
Q Consensus 336 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 415 (710)
+|++.++..+..+++ .-||......+.+-|...+.++.|.-+|..+ .-|..|...+...|.+..
T Consensus 1175 AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~ 1238 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQG 1238 (1666)
T ss_pred HHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHH
Confidence 777777776654443 2466666666677777777777776666543 235556666666666666
Q ss_pred HHHHH
Q 005178 416 AERLF 420 (710)
Q Consensus 416 A~~~~ 420 (710)
|.+.-
T Consensus 1239 AVD~a 1243 (1666)
T KOG0985|consen 1239 AVDAA 1243 (1666)
T ss_pred HHHHh
Confidence 65443
No 113
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.51 E-value=5.6e-05 Score=84.65 Aligned_cols=238 Identities=13% Similarity=0.094 Sum_probs=143.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005178 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGK 300 (710)
Q Consensus 221 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 300 (710)
+...|..|+..+...+++++|.++.+...+.... ....|..+...+.+.++..++..+ .++.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~ 91 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL-----------------NLID 91 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh-----------------hhhh
Confidence 3456777777777777777777777766655221 223333333355566654444333 2333
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 005178 301 MFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380 (710)
Q Consensus 301 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 380 (710)
......++..+..+...|...+ -+..++..+..+|-+.|+.++|..+|+++++.. +-|..+.|.+...|+.. ++++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 3334444444444444454432 244566677778888888888888888887775 45677777777777777 7777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005178 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460 (710)
Q Consensus 381 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 460 (710)
|++++.+.... |....++..+.+++.++.... +.+...+ ..+.+.+.
T Consensus 168 A~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~--~~d~d~f----------------~~i~~ki~ 214 (906)
T PRK14720 168 AITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN--SDDFDFF----------------LRIERKVL 214 (906)
T ss_pred HHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC--cccchHH----------------HHHHHHHH
Confidence 77777766543 555667777777777777654 2232222 23333333
Q ss_pred Hc-CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005178 461 EL-GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVS 514 (710)
Q Consensus 461 ~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 514 (710)
.. |..--+.++-.+...|...+++++++.+++.+++.... |......++.+|.
T Consensus 215 ~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 215 GHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred hhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 22 23334455666667788888888888888888875433 3444455555554
No 114
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.50 E-value=0.0022 Score=65.88 Aligned_cols=402 Identities=10% Similarity=0.123 Sum_probs=238.5
Q ss_pred CCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005178 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAI 263 (710)
Q Consensus 184 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 263 (710)
+-|..+|+.||+-+..+ .++++.+.++++... .+-....|..-|..-.+..+++....+|.+.+.. ..+...|...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHH
Confidence 67899999999988777 999999999999875 3335678999999999999999999999988876 3467777777
Q ss_pred HHHHHH-cCCHH----HHHHHHHHHHh-CCCCC-CHHHHHHHHHH---------HHhcCCHHHHHHHHHHHHHCCCCC--
Q 005178 264 LDVYAK-SGKVE----EVLSLYERGVA-SGWKP-DPIAFSVLGKM---------FGESGDYDGIRYVLQEMKSLGVQP-- 325 (710)
Q Consensus 264 i~~~~~-~g~~~----~A~~~~~~~~~-~g~~~-~~~~~~~li~~---------~~~~g~~~~A~~~~~~m~~~g~~p-- 325 (710)
++--.+ .|+.. ...+.|+-.+. .|+.+ +-..|+..+.. |..+.+++...++++++...-+.-
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 764433 22322 22334444332 33222 22335544443 344557778888898888642211
Q ss_pred ----CHHHHHHHHHHH-------HHcCCHHHHHHHHHHHHH--CCCCCCHHH---------------HHHHHHHHHhcCC
Q 005178 326 ----NLVVYNTLLEAM-------GKAGKPGLARSLFDEMVE--SGLTPDEKT---------------LTALIKIYGKARW 377 (710)
Q Consensus 326 ----~~~~~~~li~~~-------~~~g~~~~A~~~~~~m~~--~g~~p~~~~---------------~~~li~~~~~~g~ 377 (710)
|-..|..=|+.. -+...+-.|..+++++.. .|+..+..+ |-.+|.---.++-
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL 252 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCc
Confidence 111222112211 123456677888877753 343222211 3334432211111
Q ss_pred H--------HHHHHHHHHH-HhCCCCCCHHHHH-----HHHHHHHHcCC-------HHHHHHHHHHHHhCCCCCCCHHHH
Q 005178 378 A--------KDALELWERM-RENKWPMDFILYN-----TLLNMCADIGL-------VEEAERLFEDMKLSDYCKPDNYSY 436 (710)
Q Consensus 378 ~--------~~A~~~~~~m-~~~~~~~~~~~~~-----~li~~~~~~g~-------~~~A~~~~~~~~~~~~~~~~~~~~ 436 (710)
- ....-+|++. .-.+..|++.... ..-+.+...|+ -+++..+++.....-. .-+..+|
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~-~~~~~Ly 331 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLL-KENKLLY 331 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 0 1111222222 1223333322111 11123334444 4556666666654332 3344555
Q ss_pred HHHHHHHHhCC---CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 005178 437 TAMLNIYGSGG---NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP-DDRLCGCLLSV 512 (710)
Q Consensus 437 ~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~ 512 (710)
..+.+---..- ..+....+++++...-..--..+|..+++.-.+..-++.|..+|.++.+.+..+ +..++++++..
T Consensus 332 ~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy 411 (656)
T KOG1914|consen 332 FALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY 411 (656)
T ss_pred HHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH
Confidence 55444322222 255666777777653222224567778888888888999999999999888777 45567777776
Q ss_pred HHhcCChHHHHHHHHHHHHhCCcHHHHH----HHHHhhcCCcccHHHHHHHHHHhc---cCCCC--hhhHHHHHHHHHhC
Q 005178 513 VSLCETSEDVGKVITCLQQANPKLVAFL----NLIEDNSTGFENIKEEFRNVIKDT---EVDAR--RPFCNCLIDICRNR 583 (710)
Q Consensus 513 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~----~~L~~~~~~~~~~~~~a~~~~~~~---~~~~~--~~~~~~l~~~~~~~ 583 (710)
|+ .++.+-|.++|+.-.+..++...++ +.|...- ....++.++++. ...++ ..+|+.+++.-...
T Consensus 412 ~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lN-----dd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~v 485 (656)
T KOG1914|consen 412 YC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLN-----DDNNARALFERVLTSVLSADKSKEIWDRMLEYESNV 485 (656)
T ss_pred Hh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-----cchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhc
Confidence 65 4666999999999888777766533 4444321 223455566553 22333 35999999999999
Q ss_pred CCHHHHHHHHHHH
Q 005178 584 NLNERAHELLYLG 596 (710)
Q Consensus 584 g~~~~A~~~~~~~ 596 (710)
|+.+.+.++-++.
T Consensus 486 GdL~si~~lekR~ 498 (656)
T KOG1914|consen 486 GDLNSILKLEKRR 498 (656)
T ss_pred ccHHHHHHHHHHH
Confidence 9999998887765
No 115
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.50 E-value=0.0037 Score=68.26 Aligned_cols=229 Identities=13% Similarity=0.060 Sum_probs=134.8
Q ss_pred HHHHHhcc--CHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHH--HccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005178 158 LLILNSLK--FWQKSYFFFNWIKSQNLFPMETIFYNVTMKSL--RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233 (710)
Q Consensus 158 ~~~l~~l~--~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~ 233 (710)
.-++..+. ++..|+.-.+.+.++. |+. .|..++.++ .+.|+.++|..+++.....+.. |..|...+-.+|.
T Consensus 14 rpi~d~ld~~qfkkal~~~~kllkk~---Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~ 88 (932)
T KOG2053|consen 14 RPIYDLLDSSQFKKALAKLGKLLKKH---PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYR 88 (932)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHC---CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHH
Confidence 34555554 5888888888877764 332 244444444 6788888888888777665544 7788888888888
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-------
Q 005178 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG------- 306 (710)
Q Consensus 234 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g------- 306 (710)
..++.++|..+|++..+. .|+......+..+|.|.+.+.+-.+.--++-+. .+-+...+=++++.+...-
T Consensus 89 d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~ 165 (932)
T KOG2053|consen 89 DLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELL 165 (932)
T ss_pred HHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccc
Confidence 888888888888888765 466777777778888877665433333222221 2233444434444443221
Q ss_pred ---CHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005178 307 ---DYDGIRYVLQEMKSLG-VQPNLVVYNTLLEAMGKAGKPGLARSLFD-EMVESGLTPDEKTLTALIKIYGKARWAKDA 381 (710)
Q Consensus 307 ---~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 381 (710)
-..-|.+.++.+.+.+ ---+..-...-...+-..|++++|.+++. ...+.-..-+...-+--+..+...+++.+.
T Consensus 166 ~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l 245 (932)
T KOG2053|consen 166 DPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQEL 245 (932)
T ss_pred cchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHH
Confidence 1233555555555543 11111122223334455667777777773 333332233344444556666777777777
Q ss_pred HHHHHHHHhCCCC
Q 005178 382 LELWERMRENKWP 394 (710)
Q Consensus 382 ~~~~~~m~~~~~~ 394 (710)
.++-.++..+|..
T Consensus 246 ~~l~~~Ll~k~~D 258 (932)
T KOG2053|consen 246 FELSSRLLEKGND 258 (932)
T ss_pred HHHHHHHHHhCCc
Confidence 7777777776543
No 116
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.48 E-value=4.9e-05 Score=71.23 Aligned_cols=124 Identities=12% Similarity=0.040 Sum_probs=79.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHH-HhcCC--HHH
Q 005178 410 IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL-GKARR--IDD 486 (710)
Q Consensus 410 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~--~~~ 486 (710)
.++.+++...++...+.+ +.|...|..+...|...|++++|...|++..+.... +...+..+..++ ...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~~--P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHH
Confidence 455566666666666655 566677777777777777777777777777664432 556666666653 45555 367
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHH
Q 005178 487 LVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLV 537 (710)
Q Consensus 487 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 537 (710)
|.+++++.++.+.. +...+..+...+.+.|++++|+..++++.+..|...
T Consensus 129 A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 129 TREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 77777777664433 445666666667777777777777777766655443
No 117
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.47 E-value=8.8e-06 Score=72.05 Aligned_cols=121 Identities=7% Similarity=-0.011 Sum_probs=87.6
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005178 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDR 497 (710)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 497 (710)
.+|++..+.. |+ .+..+...+...|++++|...|+.+...... +...|..+..++.+.|++++|+..|++....
T Consensus 14 ~~~~~al~~~---p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLSVD---PE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHcC---HH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4455555432 33 3445677777888888888888888775432 6777788888888888888888888888875
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHh
Q 005178 498 GVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIED 545 (710)
Q Consensus 498 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~ 545 (710)
+.. +...+..+..++...|+.++|+..|+.+.+..|++...+...+.
T Consensus 88 ~p~-~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~ 134 (144)
T PRK15359 88 DAS-HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQN 134 (144)
T ss_pred CCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 432 55677778888888888888888888888888888777766654
No 118
>PF12854 PPR_1: PPR repeat
Probab=98.47 E-value=2.3e-07 Score=58.54 Aligned_cols=32 Identities=50% Similarity=0.819 Sum_probs=14.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005178 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353 (710)
Q Consensus 322 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 353 (710)
|+.||..||++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 33444444444444444444444444444443
No 119
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.46 E-value=4.9e-05 Score=74.12 Aligned_cols=64 Identities=20% Similarity=0.075 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-H---HHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 005178 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN-L---VVYNTLLEAMGKAGKPGLARSLFDEMVES 356 (710)
Q Consensus 291 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 356 (710)
....+..+...+...|++++|...|+++.... |+ . .++..+..++.+.|++++|...|+++.+.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~ 99 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL 99 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 34555556666666666666666666665532 22 1 24455556666666666666666666554
No 120
>PF12854 PPR_1: PPR repeat
Probab=98.46 E-value=2.5e-07 Score=58.31 Aligned_cols=32 Identities=28% Similarity=0.410 Sum_probs=23.3
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005178 463 GVAINVMGCTCLIQCLGKARRIDDLVRVFGVS 494 (710)
Q Consensus 463 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 494 (710)
|+.||..+|++||.+|++.|++++|+++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56677777777777777777777777777766
No 121
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.43 E-value=3.5e-05 Score=81.49 Aligned_cols=212 Identities=12% Similarity=0.128 Sum_probs=125.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 005178 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307 (710)
Q Consensus 228 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 307 (710)
+...+...|-...|..+|+++. .|.-+|.+|+..|+..+|..+..+..+. +||+..|..+.+......-
T Consensus 404 laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHH
Confidence 3345566666666666665543 2455566666666666666666666553 4666666666666666666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005178 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387 (710)
Q Consensus 308 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 387 (710)
+++|.++++..... +-..+.....+.+++.++.+.|+.-.+.. +....+|-.+..+..+.+++..|.+.|..
T Consensus 473 yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~r 544 (777)
T KOG1128|consen 473 YEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHR 544 (777)
T ss_pred HHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHH
Confidence 66666666654321 11111222233566666666666655432 23445666666666666777777776666
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 005178 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461 (710)
Q Consensus 388 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (710)
....... +...||.+-.+|.+.++-.+|...+.+..+.+ ..+...|...+....+-|.+++|++.+.++.+
T Consensus 545 cvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn--~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 545 CVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN--YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC--CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 6653222 45567777777777777777777777766655 34445566666666667777777777766654
No 122
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.39 E-value=0.0002 Score=80.34 Aligned_cols=240 Identities=10% Similarity=0.077 Sum_probs=145.9
Q ss_pred CCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 005178 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS-TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSA 262 (710)
Q Consensus 184 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 262 (710)
+.+...+..|+..|...+++++|.++.+...+. .|+...+- .+...+.+.++.+++.-+ .
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~ 88 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------N 88 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------h
Confidence 456778899999999999999999999877765 45543332 222256666665554433 3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 005178 263 ILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342 (710)
Q Consensus 263 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 342 (710)
++.......++.-...++..|.+. .-+..++-.+..+|-+.|+.++|..+++++.+.. +-|..+.|.+...|... +
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence 333344444554444455555553 2445577778888888888888888888888876 44777888888888888 8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005178 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED 422 (710)
Q Consensus 343 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 422 (710)
+++|++++.+.+.. |...+++..+.++|.++...... |... -..+.+.
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~----------------f~~i~~k 212 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDF----------------FLRIERK 212 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchH----------------HHHHHHH
Confidence 88888888777643 44556677777777777665222 2111 1122222
Q ss_pred HHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 005178 423 MKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479 (710)
Q Consensus 423 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 479 (710)
+...-....-+.++-.+-..|...++++++..+++.+++.... |.....-++.+|.
T Consensus 213 i~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 213 VLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 2221101223344445555555666666666666666654333 4444555555554
No 123
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.38 E-value=9.7e-05 Score=69.05 Aligned_cols=158 Identities=18% Similarity=0.083 Sum_probs=90.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005178 296 SVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA 375 (710)
Q Consensus 296 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 375 (710)
..+-..+...|+-+....+....... .+.|....+.++....+.|++.+|...|++..... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 33444555555555555555554332 12233444445566666666666666666665543 45566666666666666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 005178 376 RWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIEL 455 (710)
Q Consensus 376 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 455 (710)
|+++.|..-|.+..+.... +...++.|.-.|.-.|+++.|..++......+ .-|...-..+.-.....|++++|..+
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~--~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP--AADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC--CCchHHHHHHHHHHhhcCChHHHHhh
Confidence 6666666666666654333 44555556666666666666666666666554 34555556666666666666666665
Q ss_pred HHH
Q 005178 456 FEE 458 (710)
Q Consensus 456 ~~~ 458 (710)
...
T Consensus 225 ~~~ 227 (257)
T COG5010 225 AVQ 227 (257)
T ss_pred ccc
Confidence 544
No 124
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.37 E-value=0.00012 Score=68.47 Aligned_cols=157 Identities=15% Similarity=0.043 Sum_probs=102.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Q 005178 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445 (710)
Q Consensus 366 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 445 (710)
..+-..+...|+-+....+........ .-|.......+....+.|++..|+..|.+..... ++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~--p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA--PTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC--CCChhhhhHHHHHHHH
Confidence 445555666666666666666544332 2255556666777777777777777777777665 6777777777777777
Q ss_pred CCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 005178 446 GGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKV 525 (710)
Q Consensus 446 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 525 (710)
.|+.++|..-|.+..+.... +...++.|...|.-.|+.+.|..++......+.. |..+-..+..+....|++++|..+
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 147 LGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred ccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhh
Confidence 77777777777777764332 4556666666677777777777777776654433 445555666666777777777665
Q ss_pred HH
Q 005178 526 IT 527 (710)
Q Consensus 526 ~~ 527 (710)
..
T Consensus 225 ~~ 226 (257)
T COG5010 225 AV 226 (257)
T ss_pred cc
Confidence 43
No 125
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.37 E-value=0.00026 Score=78.69 Aligned_cols=200 Identities=16% Similarity=0.135 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHHhcCCHHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005178 292 PIAFSVLGKMFGESGDYDGI-RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK 370 (710)
Q Consensus 292 ~~~~~~li~~~~~~g~~~~A-~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 370 (710)
+.....+=.+.+.-|.-++| .+++.+..+ ++..........+++.-...... ....+...+..|..
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~La~ 94 (694)
T PRK15179 28 PTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVR-RYPHTELFQVLVAR 94 (694)
T ss_pred cHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHH-hccccHHHHHHHHH
Confidence 34444444455666666665 344444442 23333332223333222222222 23445667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHH
Q 005178 371 IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450 (710)
Q Consensus 371 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 450 (710)
+..+.|.+++|..+++...+.... +......++..+.+.+++++|...+++..... +.+......+..++.+.|+++
T Consensus 95 i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--p~~~~~~~~~a~~l~~~g~~~ 171 (694)
T PRK15179 95 ALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG--SSSAREILLEAKSWDEIGQSE 171 (694)
T ss_pred HHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHhcchH
Confidence 777888888888888887775322 45566667777778888888888888877765 566667777777778888888
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005178 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCL 509 (710)
Q Consensus 451 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 509 (710)
+|..+|+++...+. -+..++..+..++...|+.++|...|++..+. ..|...-|+.+
T Consensus 172 ~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~ 228 (694)
T PRK15179 172 QADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRR 228 (694)
T ss_pred HHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHH
Confidence 88888888877332 24677777777788888888888888877753 22333444443
No 126
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=0.00046 Score=64.54 Aligned_cols=159 Identities=14% Similarity=0.177 Sum_probs=90.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh-
Q 005178 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS- 445 (710)
Q Consensus 367 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~- 445 (710)
.-...|+..|++++|++...... +......=+..+.+..+++-|++.+++|.+. .+..|.+.|..++.+
T Consensus 113 ~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i----ded~tLtQLA~awv~l 182 (299)
T KOG3081|consen 113 LAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI----DEDATLTQLAQAWVKL 182 (299)
T ss_pred HhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----chHHHHHHHHHHHHHH
Confidence 33445666677777776665522 2222222234445566667777777777652 344455545444433
Q ss_pred ---CCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH-
Q 005178 446 ---GGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSED- 521 (710)
Q Consensus 446 ---~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~- 521 (710)
.+.+.+|.-+|++|-+. ..|+..+.+....++...|++++|..++++.++...+ ++.+...++.+-...|...+
T Consensus 183 a~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~ 260 (299)
T KOG3081|consen 183 ATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEV 260 (299)
T ss_pred hccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHH
Confidence 44566777777777553 4466677777777777777777777777777755443 44555555544445554333
Q ss_pred HHHHHHHHHHhCCcHH
Q 005178 522 VGKVITCLQQANPKLV 537 (710)
Q Consensus 522 a~~~~~~~~~~~p~~~ 537 (710)
..+.+.++....|++.
T Consensus 261 ~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 261 TERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHHHHhcCCcch
Confidence 3445555555566554
No 127
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.36 E-value=9.7e-05 Score=69.22 Aligned_cols=119 Identities=10% Similarity=0.042 Sum_probs=83.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH-HHhCCC--HHH
Q 005178 375 ARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNI-YGSGGN--VDN 451 (710)
Q Consensus 375 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~--~~~ 451 (710)
.++.+++...++...+.+.. |...|..+...|...|++++|...|++..+.. +.+...+..+..+ |...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 45556666666666665433 67777777777777777777777777777765 5667777777765 356666 477
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005178 452 AIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDR 497 (710)
Q Consensus 452 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 497 (710)
|..++++..+.+.. +...+..+...+.+.|++++|+..|+++++.
T Consensus 129 A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 129 TREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 77777777775543 5667777777777788888888888777754
No 128
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.35 E-value=4.1e-05 Score=67.78 Aligned_cols=96 Identities=11% Similarity=-0.064 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 005178 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL 478 (710)
Q Consensus 399 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 478 (710)
.+..+...+...|++++|...|+...... +.+...|..+..++...|++++|...|+++.+.+. .+...+..+..++
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l 102 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCL 102 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHH
Confidence 34455666777788888888888777765 56777777788888888888888888888777543 2667777777778
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 005178 479 GKARRIDDLVRVFGVSIDR 497 (710)
Q Consensus 479 ~~~g~~~~A~~~~~~m~~~ 497 (710)
.+.|++++|+..|+..+..
T Consensus 103 ~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 103 KMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 8888888888888877763
No 129
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.35 E-value=6.3e-05 Score=73.36 Aligned_cols=186 Identities=13% Similarity=-0.004 Sum_probs=121.6
Q ss_pred CCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--
Q 005178 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDN----ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDE-- 257 (710)
Q Consensus 184 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-- 257 (710)
+.....+..+...+...|++++|...|+++.... |+. ..+..+..++.+.|++++|+..|+++.+.......
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 3455667777778888899999999988887752 331 45666777888889999999999888876332111
Q ss_pred HHHHHHHHHHHHc--------CCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 005178 258 VTYSAILDVYAKS--------GKVEEVLSLYERGVASGWKPDP-IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328 (710)
Q Consensus 258 ~~~~~li~~~~~~--------g~~~~A~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 328 (710)
.++..+..++.+. |++++|.+.|+.+.... |+. ..+..+..... ... ... .
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~------~~~--------~ 167 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRN------RLA--------G 167 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHH------HHH--------H
Confidence 2455555555544 67888888888887652 332 22222211100 000 000 0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 005178 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGL--TPDEKTLTALIKIYGKARWAKDALELWERMREN 391 (710)
Q Consensus 329 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 391 (710)
....+...+.+.|++++|...|+...+..- +.....+..+..++.+.|++++|..+++.+...
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 112456678888999999998888876521 223467778888888999999999888887764
No 130
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=0.00037 Score=65.16 Aligned_cols=138 Identities=23% Similarity=0.253 Sum_probs=66.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---
Q 005178 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK--- 374 (710)
Q Consensus 298 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~--- 374 (710)
-...|+..|++++|++...... +......=+..+.+..+.+-|.+.+++|.+. .+..|.+.|..+|.+
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLAT 184 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhc
Confidence 3345556666666666555421 2222222233444555556666666666543 133444444444432
Q ss_pred -cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCC
Q 005178 375 -ARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447 (710)
Q Consensus 375 -~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 447 (710)
.+.+.+|.-+|++|-++ ..|+..+.+-...++...|++++|+.+++...... ..+..+...+|.+-...|
T Consensus 185 ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd--~~dpetL~Nliv~a~~~G 255 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD--AKDPETLANLIVLALHLG 255 (299)
T ss_pred cchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhC
Confidence 23455555555555443 34455555555555555555555555555555444 234444444444333333
No 131
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.32 E-value=0.00029 Score=78.32 Aligned_cols=235 Identities=10% Similarity=0.010 Sum_probs=162.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005178 256 DEVTYSAILDVYAKSGKVEEVL-SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLL 334 (710)
Q Consensus 256 ~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 334 (710)
+......+=.+....|..++|- +++.++.+ ++...+......+++.-...... ....+...+-.|.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~La 93 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVR-RYPHTELFQVLVA 93 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHH-hccccHHHHHHHH
Confidence 4444444445566677766663 44444432 22222222222333222222222 2345688899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 005178 335 EAMGKAGKPGLARSLFDEMVESGLTPD-EKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413 (710)
Q Consensus 335 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 413 (710)
....+.|++++|..+++...+. .|+ ......+..++.+.+++++|+..+++....... +......+..++.+.|++
T Consensus 94 ~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~~l~~~g~~ 170 (694)
T PRK15179 94 RALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAKSWDEIGQS 170 (694)
T ss_pred HHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHhcch
Confidence 9999999999999999999986 454 567778889999999999999999999987554 777888889999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005178 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGV 493 (710)
Q Consensus 414 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 493 (710)
++|.++|+++...+ +.+..++..+..++...|+.++|...|++..+.- .+....|+.++ +++..-..++++
T Consensus 171 ~~A~~~y~~~~~~~--p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~~~~~~~~~~~~ 241 (694)
T PRK15179 171 EQADACFERLSRQH--PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------VDLNADLAALRR 241 (694)
T ss_pred HHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------HHHHHHHHHHHH
Confidence 99999999999854 5668999999999999999999999999998752 23445555543 233344455555
Q ss_pred HHHC----CCCCCHHHHHHHHHHHHh
Q 005178 494 SIDR----GVKPDDRLCGCLLSVVSL 515 (710)
Q Consensus 494 m~~~----~~~p~~~~~~~ll~~~~~ 515 (710)
+.-. |..........++.-|..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (694)
T PRK15179 242 LGVEGDGRDVPVSILVLEKMLQEIGR 267 (694)
T ss_pred cCcccccCCCceeeeeHHHHHHHHhh
Confidence 5422 222223344555555544
No 132
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.26 E-value=3.9e-05 Score=67.39 Aligned_cols=118 Identities=13% Similarity=0.083 Sum_probs=82.6
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005178 419 LFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRG 498 (710)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 498 (710)
.++.+.... +.+......+...+...|++++|...|+.+...+. .+...|..+..+|.+.|++++|..++++.++.+
T Consensus 5 ~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLGLD--SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDP-YNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHcCC--hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344444433 33455566677777778888888888887776543 266777777778888888888888888777654
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHH
Q 005178 499 VKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFL 540 (710)
Q Consensus 499 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 540 (710)
. .+...+..+..+|...|++++|.+.|+.+.+..|+...+.
T Consensus 82 p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 82 P-DDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred C-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 2 2455666677778888888888888888888887766544
No 133
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.25 E-value=0.0023 Score=65.31 Aligned_cols=139 Identities=19% Similarity=0.134 Sum_probs=74.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 005178 336 AMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEE 415 (710)
Q Consensus 336 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 415 (710)
.+...|.+++|+..++.++..- +-|...+......+.+.++.++|.+.++++...... .....-.+.++|.+.|++.+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHH
Confidence 3445556666666666655441 223344444455556666666666666666554211 14444455556666666666
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005178 416 AERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSI 495 (710)
Q Consensus 416 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 495 (710)
|+.+++...... +-|...|..|..+|...|+..++..-..++ |...|+++.|+..+....
T Consensus 393 ai~~L~~~~~~~--p~dp~~w~~LAqay~~~g~~~~a~~A~AE~------------------~~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 393 AIRILNRYLFND--PEDPNGWDLLAQAYAELGNRAEALLARAEG------------------YALAGRLEQAIIFLMRAS 452 (484)
T ss_pred HHHHHHHHhhcC--CCCchHHHHHHHHHHHhCchHHHHHHHHHH------------------HHhCCCHHHHHHHHHHHH
Confidence 666666655544 455556666666666666655555444332 334555666655555554
Q ss_pred H
Q 005178 496 D 496 (710)
Q Consensus 496 ~ 496 (710)
+
T Consensus 453 ~ 453 (484)
T COG4783 453 Q 453 (484)
T ss_pred H
Confidence 3
No 134
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=0.0019 Score=60.14 Aligned_cols=191 Identities=15% Similarity=0.052 Sum_probs=125.3
Q ss_pred CCHHHHHHHHHHHHHC---C-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 005178 341 GKPGLARSLFDEMVES---G-LTPDEK-TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEE 415 (710)
Q Consensus 341 g~~~~A~~~~~~m~~~---g-~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 415 (710)
.+.++..+++.+++.. | ..++.. .|..++-+....|+.+.|...++.+...- +-+..+-..-.-.+-..|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence 4556666666666532 3 334433 34455555667778888888888877653 2122222211222445688888
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005178 416 AERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSI 495 (710)
Q Consensus 416 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 495 (710)
|+++++.+.+.+ +.|..++-.-+-..-..|+--+|++-+.+..+. +..|...|.-+...|...|+++.|.-.+++++
T Consensus 105 A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 105 AIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred HHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 888888888777 677777777777777777777888777777664 44588888888888888888888888888887
Q ss_pred HCCCCC-CHHHHHHHHHHHHhc---CChHHHHHHHHHHHHhCCcHH
Q 005178 496 DRGVKP-DDRLCGCLLSVVSLC---ETSEDVGKVITCLQQANPKLV 537 (710)
Q Consensus 496 ~~~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~p~~~ 537 (710)
-. .| ++..+..+...+.-. .+.+-+.++|.+..+++|.+.
T Consensus 182 l~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ 225 (289)
T KOG3060|consen 182 LI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNL 225 (289)
T ss_pred Hc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhH
Confidence 63 44 334444555544433 345667888888888888443
No 135
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.15 E-value=0.00034 Score=71.11 Aligned_cols=142 Identities=12% Similarity=0.007 Sum_probs=102.9
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC
Q 005178 439 MLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD-DRLCGCLLSVVSLCE 517 (710)
Q Consensus 439 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g 517 (710)
..-.+...|++++|+..++.++..-. -|...+......+.+.|+.++|.+.+++++.. .|+ ......+..+|.+.|
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g 388 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGG 388 (484)
T ss_pred HHHHHHHhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcC
Confidence 33345567788888888888776432 36666677777888888888888888888763 455 445666777888888
Q ss_pred ChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHHHHhccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005178 518 TSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGT 597 (710)
Q Consensus 518 ~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 597 (710)
++.+|+++++.....+|++...+++|+..+...|+..+ .--+....|...|+++.|+..+..+.
T Consensus 389 ~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~----------------a~~A~AE~~~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 389 KPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAE----------------ALLARAEGYALAGRLEQAIIFLMRAS 452 (484)
T ss_pred ChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHH----------------HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 88888888888888888888888888877665553322 22345667888899999998888875
Q ss_pred Hc
Q 005178 598 LY 599 (710)
Q Consensus 598 ~~ 599 (710)
+.
T Consensus 453 ~~ 454 (484)
T COG4783 453 QQ 454 (484)
T ss_pred Hh
Confidence 43
No 136
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.11 E-value=0.00014 Score=63.80 Aligned_cols=97 Identities=13% Similarity=0.126 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 005178 397 FILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476 (710)
Q Consensus 397 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 476 (710)
......+...+...|++++|.+.|+.+...+ +.+...|..+...|...|++++|..++++..+.+. .+...+..+..
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~ 93 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP-DDPRPYFHAAE 93 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CChHHHHHHHH
Confidence 3445555666667777777777777776654 45666777777777777777777777777666432 24566666667
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 005178 477 CLGKARRIDDLVRVFGVSID 496 (710)
Q Consensus 477 ~~~~~g~~~~A~~~~~~m~~ 496 (710)
+|...|++++|+..|++..+
T Consensus 94 ~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777777666
No 137
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.04 E-value=0.006 Score=56.90 Aligned_cols=186 Identities=15% Similarity=0.094 Sum_probs=121.7
Q ss_pred CChHHHHHHHHHHHH---CC-CCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHH
Q 005178 201 RQFQLIEQLANEMVS---NE-IELDNIT-YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEV-TYSAILDVYAKSGKVE 274 (710)
Q Consensus 201 g~~~~A~~l~~~m~~---~g-~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~ 274 (710)
.+.++..+++.++.. .| ..++..+ |..++-+....|+.+.|...++.+...- |... +...-.-.+-..|+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchh
Confidence 455666666666543 23 4455543 4445557777888888888888877652 3222 2211122244468888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005178 275 EVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMV 354 (710)
Q Consensus 275 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 354 (710)
+|+++|+.+++.+ +.|.+++---+.+.-..|+--+|++-+.+..+. +..|...|.-+...|...|++++|.-.+++++
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 8888888888775 556677776666777777777887777777664 45688888888888888888888888888887
Q ss_pred HCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhC
Q 005178 355 ESGLTPDEKTLTALIKIYGKA---RWAKDALELWERMREN 391 (710)
Q Consensus 355 ~~g~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~ 391 (710)
-.. +.+...+..+...+.-. .+.+.+.++|.+..+.
T Consensus 182 l~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 182 LIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 652 33444444454444333 3566777777777765
No 138
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.00 E-value=0.00014 Score=69.38 Aligned_cols=101 Identities=13% Similarity=0.108 Sum_probs=70.3
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChH
Q 005178 442 IYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD-RLCGCLLSVVSLCETSE 520 (710)
Q Consensus 442 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~ 520 (710)
-..+.+++.+|+..|.++++.... |.+-|..-..+|.+.|.++.|++-.+..+. +.|.. ..|..|..+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHH
Confidence 355677777777777777775433 566666667777777777777777777666 34443 37777777777777777
Q ss_pred HHHHHHHHHHHhCCcHHHHHHHHHh
Q 005178 521 DVGKVITCLQQANPKLVAFLNLIED 545 (710)
Q Consensus 521 ~a~~~~~~~~~~~p~~~~~~~~L~~ 545 (710)
+|++.|+++.+++|++..+...|..
T Consensus 167 ~A~~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHHhhhccCCCcHHHHHHHHH
Confidence 7777777777777777766655554
No 139
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.90 E-value=0.00041 Score=71.38 Aligned_cols=125 Identities=14% Similarity=0.144 Sum_probs=74.6
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005178 189 FYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268 (710)
Q Consensus 189 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 268 (710)
.-..++..+...++++.|+.+|+++.+.. |+. ...++..+...++-.+|++++++.++.... +...+......|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 33445555566667777777777766652 332 333555666666666777776666654322 4555555566666
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005178 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMK 319 (710)
Q Consensus 269 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 319 (710)
+.++++.|+.+.+++.... +-+-.+|..|..+|...|+++.|+..++.+.
T Consensus 246 ~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 6666666666666666642 2233466666666666666666666666554
No 140
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.90 E-value=0.064 Score=59.00 Aligned_cols=213 Identities=9% Similarity=0.029 Sum_probs=122.2
Q ss_pred HHHHHHhhCCCCCCHHHHH-HHHHhccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCC
Q 005178 140 AFLRAITEIPHQPTRENAL-LILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEI 218 (710)
Q Consensus 140 ~~~~~l~~~~~~~~~~~~~-~~l~~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 218 (710)
.+..+++.+++.+.....- ..+-.+++.++|..+++...... ..|..+...+-.+|...++.++|..+|+.....
T Consensus 31 ~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~-- 106 (932)
T KOG2053|consen 31 KLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK-- 106 (932)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--
Confidence 4455566666555433322 23556677888887777665543 347788888888888888888888888888775
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHhCC-
Q 005178 219 ELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG----------KVEEVLSLYERGVASG- 287 (710)
Q Consensus 219 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----------~~~~A~~~~~~~~~~g- 287 (710)
.|+......+..+|.+.+.+.+-.+.=-+|.+. ..-+...+=++++.+...- -..-|.+.++.+.+.+
T Consensus 107 ~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~g 185 (932)
T KOG2053|consen 107 YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKG 185 (932)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCC
Confidence 566777777777888877766444333333332 1113333333444433321 1334555666665543
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 005178 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQ-EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357 (710)
Q Consensus 288 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 357 (710)
-.-+..-.......+-..|++++|..++. ...+.-..-+...-+.-++.+...++|.+..++-.++...|
T Consensus 186 k~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 186 KIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred ccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 11122222233344556677888877773 33322222334444455666666777777777766666654
No 141
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.89 E-value=0.00047 Score=70.95 Aligned_cols=88 Identities=15% Similarity=0.115 Sum_probs=39.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHhc
Q 005178 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI-NVMGCTCLIQCLGKA 481 (710)
Q Consensus 403 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~ 481 (710)
++..+...++-.+|.+++.+..+.. +.+......-...|.+.++++.|..+.+++.+. .| +..+|..|..+|.+.
T Consensus 206 LA~v~l~~~~E~~AI~ll~~aL~~~--p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~ 281 (395)
T PF09295_consen 206 LARVYLLMNEEVEAIRLLNEALKEN--PQDSELLNLQAEFLLSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQL 281 (395)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhc
Confidence 3333334444444444444444332 233344444444444445555555555544442 22 233455555555555
Q ss_pred CCHHHHHHHHHHH
Q 005178 482 RRIDDLVRVFGVS 494 (710)
Q Consensus 482 g~~~~A~~~~~~m 494 (710)
|+++.|+..++.+
T Consensus 282 ~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 282 GDFENALLALNSC 294 (395)
T ss_pred CCHHHHHHHHhcC
Confidence 5555555444433
No 142
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.84 E-value=0.0014 Score=58.13 Aligned_cols=125 Identities=12% Similarity=0.052 Sum_probs=70.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCH--HHHHHH
Q 005178 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPD---NYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINV--MGCTCL 474 (710)
Q Consensus 400 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l 474 (710)
|..++..+ ..++...+...++.+.... +.+ ....-.+...+...|++++|...|+........++. .....+
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 33334333 3666666666666666654 233 223333445666677777777777777665432221 234445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 005178 475 IQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCL 529 (710)
Q Consensus 475 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 529 (710)
...+...|++++|+..++....... ....+.....+|...|++++|...|+..
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 6666677777777777755332222 2334555666777777777777766653
No 143
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.82 E-value=3.4e-05 Score=49.23 Aligned_cols=33 Identities=33% Similarity=0.646 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 005178 470 GCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502 (710)
Q Consensus 470 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 502 (710)
+|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 567777777777777777777777777777665
No 144
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.81 E-value=0.0002 Score=68.34 Aligned_cols=96 Identities=11% Similarity=0.128 Sum_probs=64.6
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHhcCCHH
Q 005178 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN-VMGCTCLIQCLGKARRID 485 (710)
Q Consensus 407 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~ 485 (710)
+.+.+++++|+..|.+.++.. +.|.+-|..-..+|++.|.++.|++=.+..+.. .|. ..+|..|..+|...|+++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~--P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD--PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHH
Confidence 456677777777777777665 566667777777777777777777777666662 233 456777777777777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHH
Q 005178 486 DLVRVFGVSIDRGVKPDDRLCGC 508 (710)
Q Consensus 486 ~A~~~~~~m~~~~~~p~~~~~~~ 508 (710)
+|++.|++.++ +.|+-.+|..
T Consensus 167 ~A~~aykKaLe--ldP~Ne~~K~ 187 (304)
T KOG0553|consen 167 EAIEAYKKALE--LDPDNESYKS 187 (304)
T ss_pred HHHHHHHhhhc--cCCCcHHHHH
Confidence 77777777665 5666555543
No 145
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.79 E-value=0.00078 Score=57.40 Aligned_cols=106 Identities=12% Similarity=0.017 Sum_probs=62.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC--cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHH
Q 005178 435 SYTAMLNIYGSGGNVDNAIELFEEMSELGVA--INVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK--PDDRLCGCLL 510 (710)
Q Consensus 435 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~ll 510 (710)
++..++..+.+.|++++|...|.++.+.... .....+..+..++.+.|++++|+..|+.+...... .....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4455556666667777777777666653211 11334555666677777777777777766643211 1133455566
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCcHHHHH
Q 005178 511 SVVSLCETSEDVGKVITCLQQANPKLVAFL 540 (710)
Q Consensus 511 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 540 (710)
.++.+.|+.++|.+.++.+.+..|+...+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 666677777777777777777666655443
No 146
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.79 E-value=0.0016 Score=57.84 Aligned_cols=115 Identities=16% Similarity=0.118 Sum_probs=53.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHH
Q 005178 340 AGKPGLARSLFDEMVESGLTPD---EKTLTALIKIYGKARWAKDALELWERMRENKWPMD--FILYNTLLNMCADIGLVE 414 (710)
Q Consensus 340 ~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~ 414 (710)
.++...+...++.+.... +.+ ....-.+...+...|++++|...|+.+.+....++ ......|...+...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 555555555555555432 111 11222233445555555555555555555432221 112333445555555555
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 005178 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458 (710)
Q Consensus 415 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 458 (710)
+|+..++..... ......+....+.|.+.|+.++|...|+.
T Consensus 103 ~Al~~L~~~~~~---~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQIPDE---AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHhccCc---chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555555443221 22333444555555555555555555544
No 147
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.76 E-value=0.00063 Score=70.27 Aligned_cols=102 Identities=13% Similarity=-0.011 Sum_probs=53.0
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 005178 442 IYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSED 521 (710)
Q Consensus 442 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 521 (710)
.+...|++++|+..|+++++.... +...|..+..+|.+.|++++|+..+++++..... +...|..+..+|...|++++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCHHH
Confidence 344455555555555555553322 3445555555555555555555555555543211 33345555555555555555
Q ss_pred HHHHHHHHHHhCCcHHHHHHHHHh
Q 005178 522 VGKVITCLQQANPKLVAFLNLIED 545 (710)
Q Consensus 522 a~~~~~~~~~~~p~~~~~~~~L~~ 545 (710)
|...|+++.+++|++..+...++.
T Consensus 89 A~~~~~~al~l~P~~~~~~~~l~~ 112 (356)
T PLN03088 89 AKAALEKGASLAPGDSRFTKLIKE 112 (356)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHH
Confidence 665555555555555554444443
No 148
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.76 E-value=4.5e-05 Score=48.33 Aligned_cols=33 Identities=27% Similarity=0.431 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 005178 469 MGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501 (710)
Q Consensus 469 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 501 (710)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 355666666666666666666666666555554
No 149
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.74 E-value=4.2e-05 Score=48.48 Aligned_cols=33 Identities=18% Similarity=0.152 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC
Q 005178 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIEL 220 (710)
Q Consensus 188 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 220 (710)
.+||.+|.+|++.|+++.|..+|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 355666666666666666666666666655554
No 150
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.74 E-value=5.7e-05 Score=48.18 Aligned_cols=33 Identities=48% Similarity=0.818 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 005178 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD 361 (710)
Q Consensus 329 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 361 (710)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 344444444444444444444444444444443
No 151
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.68 E-value=0.00072 Score=54.42 Aligned_cols=95 Identities=16% Similarity=0.145 Sum_probs=42.7
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 005178 438 AMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCE 517 (710)
Q Consensus 438 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 517 (710)
.+...+...|++++|..+++++.+.... +...+..+..++...|++++|.+.|+........ +..++..+..++...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHHH
Confidence 3344444445555555555544442211 2234444444455555555555555554443211 2234444444555555
Q ss_pred ChHHHHHHHHHHHHhCC
Q 005178 518 TSEDVGKVITCLQQANP 534 (710)
Q Consensus 518 ~~~~a~~~~~~~~~~~p 534 (710)
++++|...+....+..|
T Consensus 83 ~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 83 KYEEALEAYEKALELDP 99 (100)
T ss_pred hHHHHHHHHHHHHccCC
Confidence 55555555555444433
No 152
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.66 E-value=0.0013 Score=65.47 Aligned_cols=142 Identities=14% Similarity=0.129 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 005178 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNI-YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476 (710)
Q Consensus 398 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 476 (710)
.+|..++...-+.+..+.|..+|.+..+.+. .+...|.....+ |...++.+.|..+|+...+. +..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~--~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR--CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHH
Confidence 3566666666666667777777777765442 233334443333 22345555677777777664 3346667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHH
Q 005178 477 CLGKARRIDDLVRVFGVSIDRGVKPDD---RLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLI 543 (710)
Q Consensus 477 ~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L 543 (710)
.+.+.|+.+.|..+|++.+.. +.++. ..|..++..-.+.|+.+.+.++.+++.+..|+...+....
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f~ 147 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLELFS 147 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 777777777777777777643 22222 3777777777788888888888888877777655444433
No 153
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.0054 Score=61.15 Aligned_cols=264 Identities=12% Similarity=-0.031 Sum_probs=126.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHH
Q 005178 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN-LVVYNTLLEAMGK 339 (710)
Q Consensus 261 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~ 339 (710)
......+.+..++.+|+..+...++.+ +.+..-|..-...+...|++++|.--.+.-.+. ++. .....-.-.++..
T Consensus 53 k~~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a 129 (486)
T KOG0550|consen 53 KEEGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLA 129 (486)
T ss_pred HhhcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhh
Confidence 334566667777778888887777764 334555555666666677777766655544432 211 1133333444444
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHH-HHHHHHcCCHHHHH
Q 005178 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKW-PMDFILYNTL-LNMCADIGLVEEAE 417 (710)
Q Consensus 340 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~l-i~~~~~~g~~~~A~ 417 (710)
.++..+|.+.|+.-. .+ ....++..++.+..... +|....+..+ ..++...|++++|.
T Consensus 130 ~~~~i~A~~~~~~~~---------~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~ 189 (486)
T KOG0550|consen 130 LSDLIEAEEKLKSKQ---------AY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQ 189 (486)
T ss_pred hHHHHHHHHHhhhhh---------hh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHH
Confidence 444444444443110 00 01111111111111111 1222333322 23344555666666
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHH-------------HHHHHHHHHHhcCCH
Q 005178 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVM-------------GCTCLIQCLGKARRI 484 (710)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-------------~~~~li~~~~~~g~~ 484 (710)
.+--.+.+.+ ..+......-..++-..++.+.|...|++.+..+ |+.. .+..=.+-..+.|++
T Consensus 190 ~ea~~ilkld--~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y 265 (486)
T KOG0550|consen 190 SEAIDILKLD--ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNY 265 (486)
T ss_pred HHHHHHHhcc--cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccch
Confidence 5555555443 2222222222223334555566666666555532 2211 111112233456666
Q ss_pred HHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcc
Q 005178 485 DDLVRVFGVSIDR---GVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFE 551 (710)
Q Consensus 485 ~~A~~~~~~m~~~---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~ 551 (710)
..|.+.|.+.+.. .++|+...|.....+..+.|+.++|+.--+.+.+++|.....+-.-+.|+...+
T Consensus 266 ~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 266 RKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALE 335 (486)
T ss_pred hHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHH
Confidence 6666666666532 234444455555555666666666666666666666665555444444444444
No 154
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.63 E-value=0.00073 Score=69.82 Aligned_cols=122 Identities=18% Similarity=0.176 Sum_probs=67.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 005178 219 ELDNITYSTIITCAKRCNLFDEAIEWFERMYKT--GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS 296 (710)
Q Consensus 219 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 296 (710)
..+......++..+....+++++..++-+.... ....-..|..++++.|.+.|..++++.++..=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 334555555555555555556666655555443 111223344566666666666666666666666666666666666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 005178 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340 (710)
Q Consensus 297 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 340 (710)
.||..+.+.|++..|.++..+|...+...+..|+..-+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 66666666666666666666655544444445554444444443
No 155
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.63 E-value=0.0034 Score=67.80 Aligned_cols=70 Identities=11% Similarity=-0.116 Sum_probs=55.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHH
Q 005178 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVA 538 (710)
Q Consensus 467 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 538 (710)
+...|.++.......|++++|...++++++.+ |+...|..+..+|...|+.++|...|+++..++|.+.+
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 45667777666667788888888888888744 67778888888888888888888888888888887765
No 156
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.62 E-value=0.00098 Score=68.90 Aligned_cols=124 Identities=16% Similarity=0.089 Sum_probs=99.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 005178 252 GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS--GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVV 329 (710)
Q Consensus 252 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 329 (710)
+...+......+++.+....+++++..++-+.... ....-..|..++|+.|.+.|..++++.++..=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 33446777777888888888888888888887765 2223345567899999999999999999999899999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005178 330 YNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA 375 (710)
Q Consensus 330 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 375 (710)
+|.||+.+.+.|++..|.++..+|..++...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999988877667777777666666655
No 157
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.60 E-value=0.0037 Score=54.62 Aligned_cols=94 Identities=9% Similarity=0.053 Sum_probs=64.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 005178 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479 (710)
Q Consensus 400 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 479 (710)
...+...+...|++++|..+|+-+.... +.+..-|..|.-+|-..|++++|+..|..+...++ -|...+-.+..++.
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~D--p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L 114 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYD--AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHH
Confidence 3444555566777777777777777665 45666677777777777777777777777776554 25666666777777
Q ss_pred hcCCHHHHHHHHHHHHH
Q 005178 480 KARRIDDLVRVFGVSID 496 (710)
Q Consensus 480 ~~g~~~~A~~~~~~m~~ 496 (710)
..|+.+.|.+.|+..+.
T Consensus 115 ~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR 131 (157)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 77777777777776653
No 158
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.59 E-value=0.0012 Score=52.95 Aligned_cols=94 Identities=19% Similarity=0.222 Sum_probs=55.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 005178 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479 (710)
Q Consensus 400 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 479 (710)
+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|...+++..+.... +..++..+...+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD--PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHH
Confidence 3344555556666666666666665543 334455666666666666666666666666554322 3345666666666
Q ss_pred hcCCHHHHHHHHHHHHH
Q 005178 480 KARRIDDLVRVFGVSID 496 (710)
Q Consensus 480 ~~g~~~~A~~~~~~m~~ 496 (710)
..|++++|...+.+..+
T Consensus 80 ~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 80 KLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHhHHHHHHHHHHHHc
Confidence 66666666666666543
No 159
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.56 E-value=0.032 Score=55.84 Aligned_cols=80 Identities=14% Similarity=0.144 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-----cCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC--HH
Q 005178 435 SYTAMLNIYGSGGNVDNAIELFEEMSELGVA-----INVM-GCTCLIQCLGKARRIDDLVRVFGVSIDR--GVKPD--DR 504 (710)
Q Consensus 435 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~--~~ 504 (710)
++..+...+.+.|++++|..+|++....-.. .+.. .|...+-++...|+...|.+.|++.... ++..+ ..
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 4455566677777777777777776653221 1221 2333344566677777777777776532 22222 22
Q ss_pred HHHHHHHHHH
Q 005178 505 LCGCLLSVVS 514 (710)
Q Consensus 505 ~~~~ll~~~~ 514 (710)
....|+.+|-
T Consensus 237 ~~~~l~~A~~ 246 (282)
T PF14938_consen 237 FLEDLLEAYE 246 (282)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4455565554
No 160
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.061 Score=53.94 Aligned_cols=56 Identities=9% Similarity=-0.041 Sum_probs=30.5
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005178 193 TMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249 (710)
Q Consensus 193 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 249 (710)
....+-+..++.+|+..+...++.... +..-|..-...+...|++++|.--.+.-.
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~ 110 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSV 110 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhhe
Confidence 344555666666666666666665322 34444555555555566666654444433
No 161
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.50 E-value=0.0017 Score=52.54 Aligned_cols=76 Identities=21% Similarity=0.345 Sum_probs=40.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005178 298 LGKMFGESGDYDGIRYVLQEMKSLGV-QPNLVVYNTLLEAMGKAG--------KPGLARSLFDEMVESGLTPDEKTLTAL 368 (710)
Q Consensus 298 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~~~~~l 368 (710)
.|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-+.+.+|++|+..+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34444444566666666666666665 556666665555554432 223344555555555555555555555
Q ss_pred HHHHH
Q 005178 369 IKIYG 373 (710)
Q Consensus 369 i~~~~ 373 (710)
+..+.
T Consensus 111 l~~Ll 115 (120)
T PF08579_consen 111 LGSLL 115 (120)
T ss_pred HHHHH
Confidence 55443
No 162
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.50 E-value=0.0028 Score=65.47 Aligned_cols=87 Identities=11% Similarity=-0.078 Sum_probs=46.6
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHH
Q 005178 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486 (710)
Q Consensus 407 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 486 (710)
+...|++++|++.|.++.+.. +.+...|..+..+|...|++++|+..++++++.... +...|..+..+|...|++++
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCHHH
Confidence 344555555555555555544 344555555555555555555555555555553221 34455555555555555555
Q ss_pred HHHHHHHHHH
Q 005178 487 LVRVFGVSID 496 (710)
Q Consensus 487 A~~~~~~m~~ 496 (710)
|+..|++.+.
T Consensus 89 A~~~~~~al~ 98 (356)
T PLN03088 89 AKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHH
Confidence 5555555554
No 163
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.49 E-value=0.0033 Score=57.72 Aligned_cols=88 Identities=20% Similarity=0.151 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 005178 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPD-NYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477 (710)
Q Consensus 399 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 477 (710)
.+..+...+...|++++|...|++..+.....++ ...+..+...|.+.|++++|...+++..+.... +...+..+..+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 3444444455555555555555555443210111 234444555555555555555555555442211 23334444444
Q ss_pred HHhcCCHHHH
Q 005178 478 LGKARRIDDL 487 (710)
Q Consensus 478 ~~~~g~~~~A 487 (710)
|...|+...+
T Consensus 116 ~~~~g~~~~a 125 (172)
T PRK02603 116 YHKRGEKAEE 125 (172)
T ss_pred HHHcCChHhH
Confidence 4444444333
No 164
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.47 E-value=0.0051 Score=52.26 Aligned_cols=99 Identities=12% Similarity=-0.019 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC--cCHHHHHHHH
Q 005178 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYC-KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA--INVMGCTCLI 475 (710)
Q Consensus 399 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~li 475 (710)
++..+...+.+.|++++|.+.|..+...... +.....+..+..++.+.|++++|...|+.+...... .....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3445566666777777777777777654310 011345566777777777777777777777664322 1244566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 005178 476 QCLGKARRIDDLVRVFGVSIDR 497 (710)
Q Consensus 476 ~~~~~~g~~~~A~~~~~~m~~~ 497 (710)
.++.+.|+.++|...++++++.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 7777777777777777777764
No 165
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.42 E-value=0.00016 Score=44.58 Aligned_cols=29 Identities=21% Similarity=0.164 Sum_probs=17.9
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHCC
Q 005178 189 FYNVTMKSLRFGRQFQLIEQLANEMVSNE 217 (710)
Q Consensus 189 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g 217 (710)
+||.+|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 46666666666666666666666666554
No 166
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.42 E-value=0.0037 Score=57.16 Aligned_cols=121 Identities=7% Similarity=-0.047 Sum_probs=80.3
Q ss_pred HHHHHHHHHHH-HcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHH
Q 005178 450 DNAIELFEEMS-ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD--DRLCGCLLSVVSLCETSEDVGKVI 526 (710)
Q Consensus 450 ~~A~~~~~~m~-~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~ 526 (710)
..+...+..+. ..+..-....|..++..+...|++++|+..|++.+.....+. ..++..+..+|...|++++|.+.+
T Consensus 16 ~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~ 95 (168)
T CHL00033 16 TIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYY 95 (168)
T ss_pred ccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 33444444443 222222355667777778888999999999988876533322 247788888999999999999999
Q ss_pred HHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHHHHhccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHH
Q 005178 527 TCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLG 596 (710)
Q Consensus 527 ~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 596 (710)
+.+..+.|........++.. +..+...+.+.|++++|...++++
T Consensus 96 ~~Al~~~~~~~~~~~~la~i--------------------------~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 96 FQALERNPFLPQALNNMAVI--------------------------CHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhCcCcHHHHHHHHHH--------------------------HHHhhHHHHHcccHHHHHHHHHHH
Confidence 99988888776655555542 223333445678877776666654
No 167
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.41 E-value=0.00016 Score=44.56 Aligned_cols=29 Identities=24% Similarity=0.374 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005178 470 GCTCLIQCLGKARRIDDLVRVFGVSIDRG 498 (710)
Q Consensus 470 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 498 (710)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555443
No 168
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.40 E-value=0.0027 Score=62.98 Aligned_cols=131 Identities=13% Similarity=-0.024 Sum_probs=62.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh----CCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----hCCCCCCCHHH
Q 005178 365 LTALIKIYGKARWAKDALELWERMRE----NKWP-MDFILYNTLLNMCADIGLVEEAERLFEDMK----LSDYCKPDNYS 435 (710)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~ 435 (710)
|..|...|.-.|+++.|+...+.-.+ .|-+ .....+..+..++.-.|+++.|.+.|+... +.|.-.....+
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 34444444445566666655443221 1111 012244455555666666666666555432 22211122344
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHc-----CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005178 436 YTAMLNIYGSGGNVDNAIELFEEMSEL-----GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSI 495 (710)
Q Consensus 436 ~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 495 (710)
..+|.+.|.-...+++|+.++.+-+.- +..-....|.+|..+|...|..+.|+.+.+.-+
T Consensus 278 cYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 278 CYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 455566666666666666665543220 111133455556666666666666655554433
No 169
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.40 E-value=0.0037 Score=62.24 Aligned_cols=130 Identities=15% Similarity=0.116 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 005178 363 KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCAD-IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441 (710)
Q Consensus 363 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~ 441 (710)
.+|..++....+.+..+.|..+|.+.++.+. .+..+|......-.. .++.+.|..+|+...+.- +.+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 3577777777777778888888888875422 233444444444333 456666888888877764 567777888888
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005178 442 IYGSGGNVDNAIELFEEMSELGVAIN---VMGCTCLIQCLGKARRIDDLVRVFGVSID 496 (710)
Q Consensus 442 ~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 496 (710)
.+...|+.+.|..+|++.... +.++ ...|...+.-=.+.|+.+.+.++.+++.+
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888888888888888888764 2222 24788888888888888888888888876
No 170
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.36 E-value=0.0028 Score=55.37 Aligned_cols=90 Identities=6% Similarity=-0.082 Sum_probs=51.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHHHHhccCCCChh-hHHHHHHHHHhCCCHH
Q 005178 509 LLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRP-FCNCLIDICRNRNLNE 587 (710)
Q Consensus 509 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~ 587 (710)
+...+...|++++|.++|+.+..++|.+...+-.||.++...|++.+++..+-......|+.+ .+-.++.++.+.|+.+
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~ 120 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVC 120 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHH
Confidence 333444555555555555555555555555555555554444433333333333333444333 4556667778888888
Q ss_pred HHHHHHHHHHH
Q 005178 588 RAHELLYLGTL 598 (710)
Q Consensus 588 ~A~~~~~~~~~ 598 (710)
.|++.|+.++.
T Consensus 121 ~A~~aF~~Ai~ 131 (157)
T PRK15363 121 YAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHH
Confidence 88888887663
No 171
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.34 E-value=0.001 Score=49.55 Aligned_cols=62 Identities=10% Similarity=0.078 Sum_probs=42.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcH
Q 005178 474 LIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKL 536 (710)
Q Consensus 474 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 536 (710)
+...+.+.|++++|+..|+++++.... +...+..+..++.+.|++++|..+|+.+.+..|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 345567777777777777777765422 44466677777777777777777777777777765
No 172
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.33 E-value=0.00043 Score=54.78 Aligned_cols=81 Identities=22% Similarity=0.303 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 005178 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRV 490 (710)
Q Consensus 411 g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 490 (710)
|+++.|+.+++++.+.....++...+..+..+|.+.|++++|..++++ .+.+.. +......+..+|.+.|++++|+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHHH
Confidence 445555555555544431001223333345555555555555555544 211111 122222334455555555555555
Q ss_pred HHH
Q 005178 491 FGV 493 (710)
Q Consensus 491 ~~~ 493 (710)
|++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 543
No 173
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.33 E-value=0.013 Score=53.71 Aligned_cols=93 Identities=11% Similarity=-0.032 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 005178 363 KTLTALIKIYGKARWAKDALELWERMRENKWPMD--FILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440 (710)
Q Consensus 363 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li 440 (710)
..+..+...|...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+..... +.+...+..+.
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg 113 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN--PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHH
Confidence 3455556666666777777777776665432221 3456667777777777777777777777654 44566666677
Q ss_pred HHHHhCCCHHHHHHHHH
Q 005178 441 NIYGSGGNVDNAIELFE 457 (710)
Q Consensus 441 ~~~~~~g~~~~A~~~~~ 457 (710)
.+|...|+...+..-++
T Consensus 114 ~~~~~~g~~~~a~~~~~ 130 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQD 130 (172)
T ss_pred HHHHHcCChHhHhhCHH
Confidence 77777666555444333
No 174
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.33 E-value=0.0048 Score=49.99 Aligned_cols=80 Identities=14% Similarity=0.194 Sum_probs=59.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCCCCHHHH
Q 005178 330 YNTLLEAMGKAGKPGLARSLFDEMVESGL-TPDEKTLTALIKIYGKAR--------WAKDALELWERMRENKWPMDFILY 400 (710)
Q Consensus 330 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~~~~~~~~~~ 400 (710)
-...|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+|+.|...+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456666677888888889999988888 888889988888876643 234566677777777777777777
Q ss_pred HHHHHHHHH
Q 005178 401 NTLLNMCAD 409 (710)
Q Consensus 401 ~~li~~~~~ 409 (710)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 777766543
No 175
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.31 E-value=0.0026 Score=58.22 Aligned_cols=103 Identities=21% Similarity=0.332 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 005178 221 DNITYSTIITCAKRC-----NLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAF 295 (710)
Q Consensus 221 ~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~ 295 (710)
|-.+|..++..+.+. |..+-....+..|.+.|+.-|..+|+.|++.+=+ |.+- -..+|+.+-
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F----------- 112 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF----------- 112 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh-----------
Confidence 556666666655432 4455555555556666666666666666655533 2211 001111110
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 005178 296 SVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342 (710)
Q Consensus 296 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 342 (710)
.-| -.+-+-|++++++|...|+-||..++..|++.+++.+.
T Consensus 113 ----~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 ----MHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ----ccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 001 12234566666666666666666666666666655443
No 176
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.31 E-value=0.0098 Score=59.49 Aligned_cols=183 Identities=14% Similarity=0.225 Sum_probs=105.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHH
Q 005178 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES----GLTPD-EKTLTALIKIYGKARWAKDA 381 (710)
Q Consensus 307 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A 381 (710)
++++|..+|++. ...|-..|++++|.+.|.+..+. +-... ...|......|.+ .++++|
T Consensus 30 ~~e~Aa~~y~~A---------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~A 93 (282)
T PF14938_consen 30 DYEEAADLYEKA---------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEA 93 (282)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHH
T ss_pred CHHHHHHHHHHH---------------HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHH
Confidence 556666655554 34556667777777777665321 10000 1122222222222 244444
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHH
Q 005178 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG-GNVDNAIELFEEMS 460 (710)
Q Consensus 382 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~ 460 (710)
...+++ .+..|...|++..|-+++..+ ...|... |++++|+..|++..
T Consensus 94 i~~~~~---------------A~~~y~~~G~~~~aA~~~~~l----------------A~~ye~~~~d~e~Ai~~Y~~A~ 142 (282)
T PF14938_consen 94 IECYEK---------------AIEIYREAGRFSQAAKCLKEL----------------AEIYEEQLGDYEKAIEYYQKAA 142 (282)
T ss_dssp HHHHHH---------------HHHHHHHCT-HHHHHHHHHHH----------------HHHHCCTT--HHHHHHHHHHHH
T ss_pred HHHHHH---------------HHHHHHhcCcHHHHHHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHH
Confidence 444333 345566777777776665554 4456666 88999999988876
Q ss_pred Hc----CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----CCHH-HHHHHHHHHHhcCChHHHHHHHHHH
Q 005178 461 EL----GVAI-NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK-----PDDR-LCGCLLSVVSLCETSEDVGKVITCL 529 (710)
Q Consensus 461 ~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~ 529 (710)
+. |..- -..++..+...+.+.|++++|+++|++....-.. .+.. .+...+-++...|+...|.+.++..
T Consensus 143 ~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~ 222 (282)
T PF14938_consen 143 ELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERY 222 (282)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 52 2111 1345677888899999999999999998864332 1222 3334444667789999999999998
Q ss_pred HHhCCcH
Q 005178 530 QQANPKL 536 (710)
Q Consensus 530 ~~~~p~~ 536 (710)
.+..|..
T Consensus 223 ~~~~~~F 229 (282)
T PF14938_consen 223 CSQDPSF 229 (282)
T ss_dssp GTTSTTS
T ss_pred HhhCCCC
Confidence 8877643
No 177
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.30 E-value=0.017 Score=62.59 Aligned_cols=73 Identities=10% Similarity=0.076 Sum_probs=57.6
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 005178 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLC 506 (710)
Q Consensus 430 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 506 (710)
+.+...|.++.-.+...|++++|...++++++.+ |+...|..+...|...|+.++|.+.+++.... .|...+|
T Consensus 417 ~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~pt~ 489 (517)
T PRK10153 417 NVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGENTL 489 (517)
T ss_pred cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCchH
Confidence 4566778877777777899999999999988854 67888898999999999999999999888764 4443343
No 178
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.29 E-value=0.0053 Score=56.26 Aligned_cols=104 Identities=22% Similarity=0.395 Sum_probs=53.6
Q ss_pred CCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 005178 255 PDEVTYSAILDVYAKS-----GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVV 329 (710)
Q Consensus 255 ~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 329 (710)
.+-.+|..+++.|.+. |.++-....+..|.+.|+..|..+|+.|++.+=+ |.+- -..+|+.+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~----------- 111 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE----------- 111 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH-----------
Confidence 3555565555555432 4455555555555555555555555555554433 2211 00011110
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 005178 330 YNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARW 377 (710)
Q Consensus 330 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 377 (710)
..-| -.+-+-|++++++|...|+.||..++..++..+++.+.
T Consensus 112 ----F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 112 ----FMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ----hccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 0000 12335567777777777777777777777777765553
No 179
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.29 E-value=0.0012 Score=49.95 Aligned_cols=67 Identities=12% Similarity=-0.008 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHhCC
Q 005178 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCE-TSEDVGKVITCLQQANP 534 (710)
Q Consensus 467 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p 534 (710)
+...|..+...+.+.|++++|+..|++.++.+.. +...|..+..+|...| ++++|++.++++.+++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3456666667777777777777777777664311 3446666666777777 57777777777766665
No 180
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.29 E-value=0.0036 Score=62.08 Aligned_cols=95 Identities=16% Similarity=0.158 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH----cCCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCC-CCCH
Q 005178 434 YSYTAMLNIYGSGGNVDNAIELFEEMSE----LGVA-INVMGCTCLIQCLGKARRIDDLVRVFGVSID----RGV-KPDD 503 (710)
Q Consensus 434 ~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~-~p~~ 503 (710)
..|..|.+.|.-.|+++.|+...+.-+. .|-+ .....+..+.+++.-.|+++.|.+.|+.... .|- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 4567777777778888888877665332 2211 1234677788888888888888888876542 221 1123
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHH
Q 005178 504 RLCGCLLSVVSLCETSEDVGKVITC 528 (710)
Q Consensus 504 ~~~~~ll~~~~~~g~~~~a~~~~~~ 528 (710)
..+.+|.+.|.-...++.|+.++.+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~r 300 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQR 300 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 4566667777666666677666654
No 181
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.28 E-value=0.0053 Score=56.08 Aligned_cols=82 Identities=12% Similarity=0.013 Sum_probs=49.2
Q ss_pred cHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005178 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIEL--DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAI 263 (710)
Q Consensus 186 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 263 (710)
....|..+...+...|++++|+..|++.......+ ...+|..+..++...|++++|+..+++..+... .....+..+
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~-~~~~~~~~l 112 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP-FLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHH
Confidence 34556666666777777777777777776542221 123566666677777777777777777665421 133445555
Q ss_pred HHHHH
Q 005178 264 LDVYA 268 (710)
Q Consensus 264 i~~~~ 268 (710)
...|.
T Consensus 113 a~i~~ 117 (168)
T CHL00033 113 AVICH 117 (168)
T ss_pred HHHHH
Confidence 55554
No 182
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.26 E-value=0.00063 Score=53.82 Aligned_cols=81 Identities=17% Similarity=0.117 Sum_probs=40.5
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 005178 375 ARWAKDALELWERMRENKWP-MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAI 453 (710)
Q Consensus 375 ~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 453 (710)
.|+++.|+.+++++.+.... ++...+..+..+|.+.|++++|..+++. .+.+ +.+......+..+|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--PSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--HCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--CCCHHHHHHHHHHHHHhCCHHHHH
Confidence 35556666666666554321 1233334456666666666666666655 2221 122333334455666666666666
Q ss_pred HHHHH
Q 005178 454 ELFEE 458 (710)
Q Consensus 454 ~~~~~ 458 (710)
.+|++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66554
No 183
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.24 E-value=0.093 Score=55.93 Aligned_cols=238 Identities=16% Similarity=0.107 Sum_probs=136.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 005178 219 ELDNITYSTIITCAKRCNLFDEAIEWFERMYKT-GLMP--------DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWK 289 (710)
Q Consensus 219 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~ 289 (710)
.|....|..+.......-.++-|...|-+.... |++. +...-.+=+.+| -|++++|+++|-+|-.+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drr--- 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRR--- 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchh---
Confidence 467788888877766667777777776555432 2211 111112223333 47888888888777654
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005178 290 PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG-VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368 (710)
Q Consensus 290 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 368 (710)
...|..+.+.|+|-...++++.--... -.--...|+.+...++....|++|.+.|..-... ...
T Consensus 764 ------DLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~ 828 (1189)
T KOG2041|consen 764 ------DLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQ 828 (1189)
T ss_pred ------hhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhH
Confidence 234666777788766666654321100 0011246778888888888888888877654321 124
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCC
Q 005178 369 IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448 (710)
Q Consensus 369 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 448 (710)
+.+|.+..++++-..+-+.+.+ |....-.+.+++...|.-++|.+.|-+-.. |. ..+..|....+
T Consensus 829 ~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~s~-----pk-----aAv~tCv~LnQ 893 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRRSL-----PK-----AAVHTCVELNQ 893 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhccC-----cH-----HHHHHHHHHHH
Confidence 5566666666655554444433 555666777788888888877776654331 21 23455666666
Q ss_pred HHHHHHHHHHHHHcCCCcCHHHH--------------HHHHHHHHhcCCHHHHHHHHHHHH
Q 005178 449 VDNAIELFEEMSELGVAINVMGC--------------TCLIQCLGKARRIDDLVRVFGVSI 495 (710)
Q Consensus 449 ~~~A~~~~~~m~~~~~~p~~~~~--------------~~li~~~~~~g~~~~A~~~~~~m~ 495 (710)
+.+|.++-++..- |.+.+. .--|..+.+.|+.=+|.+++.+|.
T Consensus 894 W~~avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qma 950 (1189)
T KOG2041|consen 894 WGEAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMA 950 (1189)
T ss_pred HHHHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHh
Confidence 6666666544322 222211 112344566677666666666665
No 184
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.20 E-value=0.0013 Score=49.57 Aligned_cols=65 Identities=11% Similarity=0.155 Sum_probs=41.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHH
Q 005178 479 GKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIE 544 (710)
Q Consensus 479 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~ 544 (710)
.+.|++++|+++|+++...... +...+..+..+|.+.|++++|..+++.+...+|++..+..+++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 3567777777777777654322 4556666777777777777777777777777777655554443
No 185
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.18 E-value=0.32 Score=49.07 Aligned_cols=106 Identities=11% Similarity=0.149 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 005178 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL 478 (710)
Q Consensus 399 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 478 (710)
+.+..|.-+...|+...|.++-.+.. .|+..-|-..+.+|+..++|++-..+... +-.+..|..++.+|
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk-----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK-----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC 247 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC-----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence 44555666777888888888866664 58888999999999999999887776432 23557888899999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 005178 479 GKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKV 525 (710)
Q Consensus 479 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 525 (710)
.+.|+.++|..+..+ +. +..-+..|.++|++.+|.+.
T Consensus 248 ~~~~~~~eA~~yI~k-----~~-----~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 248 LKYGNKKEASKYIPK-----IP-----DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHCCCHHHHHHHHHh-----CC-----hHHHHHHHHHCCCHHHHHHH
Confidence 999999999888876 22 23456778889998888764
No 186
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.11 E-value=0.17 Score=45.18 Aligned_cols=102 Identities=17% Similarity=0.101 Sum_probs=53.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-cCHHHHHH
Q 005178 395 MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA-INVMGCTC 473 (710)
Q Consensus 395 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~ 473 (710)
|++..-..|..++...|+..+|...|++... |+.-.|......+.++....++...|...++.+.+.... -+..+...
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 4444444555555566666666666655543 333455555555555555666666666666655543210 01223334
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 005178 474 LIQCLGKARRIDDLVRVFGVSIDR 497 (710)
Q Consensus 474 li~~~~~~g~~~~A~~~~~~m~~~ 497 (710)
+...|...|++.+|...|+..+..
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh
Confidence 445556666666666666666553
No 187
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.09 E-value=0.25 Score=47.94 Aligned_cols=54 Identities=13% Similarity=0.043 Sum_probs=22.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005178 369 IKIYGKARWAKDALELWERMREN--KWPMDFILYNTLLNMCADIGLVEEAERLFED 422 (710)
Q Consensus 369 i~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 422 (710)
...|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|.++...
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 33444444444444444444432 1111222333444445555555555444433
No 188
>smart00463 SMR Small MutS-related domain.
Probab=97.04 E-value=0.0032 Score=49.13 Aligned_cols=75 Identities=31% Similarity=0.523 Sum_probs=58.6
Q ss_pred chhcccccChHHHHHHHHHHHHHHHHHHHhccCCCCeeEEEeccCcccc--hhhHHHHHHHHhhhcCCCccccCCCCceE
Q 005178 613 WSLDVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQLFLAETGTGTHKF--SQGLATAFASHVNKLAAPFRQSEGKAGCF 690 (710)
Q Consensus 613 w~~~~~~~~~G~~~~Al~~~~~~~~~~~~~~~~~p~~~~i~~~~~~~~~--~~~~~~~~~~~l~~l~~~~~~~~~~~g~~ 690 (710)
|..++++++.+.|.+++..|++..+.. + .+....|.||.|.|+. ...++..+...+....-+|.+. .|.|++
T Consensus 2 ~~lDLHG~~~~eA~~~l~~~l~~~~~~---~--~~~~~~II~G~G~~s~~g~~~i~~~l~~~l~~~~~~~~~~-~~~G~~ 75 (80)
T smart00463 2 WSLDLHGLTVEEALTALDKFLNNARLK---G--LEQKLVIITGKGKHSLGGKSGVKPALKEHLRVESFRFAEE-GNSGVL 75 (80)
T ss_pred CeEEcCCCCHHHHHHHHHHHHHHHHHc---C--CCceEEEEEcccCCCccchhhHHHHHHhchhhcccccCCC-CCCeEE
Confidence 677899999999999999888865553 2 2267999999999987 3556888889888777666653 788998
Q ss_pred Eec
Q 005178 691 VAT 693 (710)
Q Consensus 691 ~~~ 693 (710)
+..
T Consensus 76 ~v~ 78 (80)
T smart00463 76 VVK 78 (80)
T ss_pred EEE
Confidence 753
No 189
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.03 E-value=0.042 Score=46.32 Aligned_cols=21 Identities=24% Similarity=0.320 Sum_probs=8.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 005178 404 LNMCADIGLVEEAERLFEDMK 424 (710)
Q Consensus 404 i~~~~~~g~~~~A~~~~~~~~ 424 (710)
...|...|++++|..+|++..
T Consensus 45 astlr~LG~~deA~~~L~~~~ 65 (120)
T PF12688_consen 45 ASTLRNLGRYDEALALLEEAL 65 (120)
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 333444444444444444443
No 190
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.02 E-value=0.37 Score=46.77 Aligned_cols=57 Identities=11% Similarity=0.007 Sum_probs=30.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005178 264 LDVYAKSGKVEEVLSLYERGVASGWKPDPIAF---SVLGKMFGESGDYDGIRYVLQEMKSL 321 (710)
Q Consensus 264 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~ 321 (710)
...+.+.|++++|.+.|+.+...- +-+.... -.++.+|.+.+++++|...+++..+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 333445666666666666665542 1112221 23445556666666666666666653
No 191
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.99 E-value=0.062 Score=50.48 Aligned_cols=133 Identities=10% Similarity=-0.015 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH-----HH
Q 005178 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTY-----SA 262 (710)
Q Consensus 188 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-----~~ 262 (710)
.+-+.++..+.-.|.+.-...++.+.++...+.+......+.+.-.+.|+.+.|...|++..+..-..|..+. ..
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 4455666666667777777777777777655556666777777777777777777777766543222222222 23
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005178 263 ILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321 (710)
Q Consensus 263 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 321 (710)
....|.-.+++.+|...|++++..+ +.|+..-|.-.-+..-.|+..+|++.++.|.+.
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3334445566666667676666553 334444444444444456677777777777664
No 192
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.92 E-value=0.47 Score=47.91 Aligned_cols=109 Identities=17% Similarity=0.194 Sum_probs=69.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 005178 330 YNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCAD 409 (710)
Q Consensus 330 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 409 (710)
.+.-|.-+...|+...|.++-.+.. .|+..-|-..+.+++..++|++-.++-.. + -.++-|-.++.+|.+
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACLK 249 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHHH
Confidence 3444555566777777766655553 46777777777777777777766654332 1 134667777777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 005178 410 IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459 (710)
Q Consensus 410 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 459 (710)
.|+..+|..+...+. +..-+.+|.++|++.+|.+.-.+.
T Consensus 250 ~~~~~eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 250 YGNKKEASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CCCHHHHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 777777777766622 134566777777777776664443
No 193
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.90 E-value=0.56 Score=46.97 Aligned_cols=248 Identities=14% Similarity=0.087 Sum_probs=127.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005178 340 AGKPGLARSLFDEMVESGLTPDEK--TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417 (710)
Q Consensus 340 ~g~~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 417 (710)
.|+++.|.+-|+.|... |... -...|.-.-.+.|+.+.|..+-+..-+.-.. -...+.+.+...|..|+++.|+
T Consensus 133 eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~Al 208 (531)
T COG3898 133 EGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGAL 208 (531)
T ss_pred cCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHH
Confidence 45666666666665531 1111 1122222233456666666655555443221 2345556666666666666666
Q ss_pred HHHHHHHhCCCCCCCHHH--HHHHHHHHH---hCCCHHHHHHHHHHHHHcCCCcCHHH-HHHHHHHHHhcCCHHHHHHHH
Q 005178 418 RLFEDMKLSDYCKPDNYS--YTAMLNIYG---SGGNVDNAIELFEEMSELGVAINVMG-CTCLIQCLGKARRIDDLVRVF 491 (710)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~--~~~li~~~~---~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~ 491 (710)
++++.-+....+.++..- -..|+.+-. -.-+...|...-.+..+ +.||... -..-..++.+.|+..++-.++
T Consensus 209 kLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~il 286 (531)
T COG3898 209 KLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKIL 286 (531)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHH
Confidence 666665554443444322 122222211 12234455555555444 4455432 223345677888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH---HHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHHHHh-ccCC
Q 005178 492 GVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI---TCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKD-TEVD 567 (710)
Q Consensus 492 ~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~---~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~~-~~~~ 567 (710)
+.+-+....|+. + .+..+.+.|+ .+..-+ +++..++|++....-...+.-...++. ..|..--+. ....
T Consensus 287 E~aWK~ePHP~i--a--~lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~-~~ARa~Aeaa~r~~ 359 (531)
T COG3898 287 ETAWKAEPHPDI--A--LLYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEF-SAARAKAEAAAREA 359 (531)
T ss_pred HHHHhcCCChHH--H--HHHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccch-HHHHHHHHHHhhhC
Confidence 887776555543 2 2223445554 333333 344556777765444444332222322 222222222 3456
Q ss_pred CChhhHHHHHHHHH-hCCCHHHHHHHHHHHHHcC
Q 005178 568 ARRPFCNCLIDICR-NRNLNERAHELLYLGTLYG 600 (710)
Q Consensus 568 ~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~ 600 (710)
|...+|--|.++-. ..|+-.+++..+-++...-
T Consensus 360 pres~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 360 PRESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred chhhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 66677777777744 4488888888888775443
No 194
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.89 E-value=0.3 Score=43.65 Aligned_cols=126 Identities=10% Similarity=0.081 Sum_probs=54.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHH
Q 005178 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW-KPDPIAFSVLG 299 (710)
Q Consensus 221 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~-~~~~~~~~~li 299 (710)
++.---.|..++.+.|+..+|...|++...--..-|....-.+..+....+++.+|...++.+.+... ..++...-.+.
T Consensus 88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~a 167 (251)
T COG4700 88 TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFA 167 (251)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHH
Confidence 33333334444444455555555554444332233444444444444445555555555554444310 01122223344
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005178 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348 (710)
Q Consensus 300 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 348 (710)
+.|...|++.+|..-|+..... -|+...-......+.+.|+.+++..
T Consensus 168 R~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 168 RTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHH
Confidence 4455555555555555555443 2333332223333444444444433
No 195
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.87 E-value=0.73 Score=49.53 Aligned_cols=318 Identities=14% Similarity=0.069 Sum_probs=169.8
Q ss_pred HhccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHH
Q 005178 162 NSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEI--ELDNITYSTIITCAKRCNLFD 239 (710)
Q Consensus 162 ~~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~ 239 (710)
.-.+++++|..++-.+.++ ...|..+.+.|+|-...++++.-- .+. ..-...|+.+...+.....|+
T Consensus 745 ~~~g~feeaek~yld~drr----------DLAielr~klgDwfrV~qL~r~g~-~d~dD~~~e~A~r~ig~~fa~~~~We 813 (1189)
T KOG2041|consen 745 AFYGEFEEAEKLYLDADRR----------DLAIELRKKLGDWFRVYQLIRNGG-SDDDDEGKEDAFRNIGETFAEMMEWE 813 (1189)
T ss_pred hhhcchhHhhhhhhccchh----------hhhHHHHHhhhhHHHHHHHHHccC-CCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 3345677777777655432 235677788888877776664311 111 011357778888888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005178 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMK 319 (710)
Q Consensus 240 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 319 (710)
+|.+.|..-.. ....+.+|.+..++++-+.+-..+. -+....-.+..++.+.|.-++|.+.|-+..
T Consensus 814 ~A~~yY~~~~~---------~e~~~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~Lr~s 879 (1189)
T KOG2041|consen 814 EAAKYYSYCGD---------TENQIECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAYLRRS 879 (1189)
T ss_pred HHHHHHHhccc---------hHhHHHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHHHhcc
Confidence 88888765322 1345666667677766665555543 355666677888888888888887775543
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH--------------HHHHHHHHhcCCHHHHHHHH
Q 005178 320 SLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL--------------TALIKIYGKARWAKDALELW 385 (710)
Q Consensus 320 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~--------------~~li~~~~~~g~~~~A~~~~ 385 (710)
. |. .-+..|...++|.+|.++-+... -|...+. .--|..+.+.|+.-+|.+++
T Consensus 880 ~----pk-----aAv~tCv~LnQW~~avelaq~~~----l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll 946 (1189)
T KOG2041|consen 880 L----PK-----AAVHTCVELNQWGEAVELAQRFQ----LPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLL 946 (1189)
T ss_pred C----cH-----HHHHHHHHHHHHHHHHHHHHhcc----chhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHH
Confidence 2 21 24456667777777776655432 1111111 12356778888877777777
Q ss_pred HHHHhC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 005178 386 ERMREN----KWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461 (710)
Q Consensus 386 ~~m~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (710)
.+|-+. +.++-..--.-++.+ .-..+..++.+-.+.....|. ..+... +...|-..++-++.+..-.
T Consensus 947 ~qmae~e~~K~~p~lr~KklYVL~A-lLvE~h~~~ik~~~~~~~~g~-~~dat~-------lles~~l~~~~ri~~n~Wr 1017 (1189)
T KOG2041|consen 947 SQMAEREQEKYVPYLRLKKLYVLGA-LLVENHRQTIKELRKIDKHGF-LEDATD-------LLESGLLAEQSRILENTWR 1017 (1189)
T ss_pred HHHhHHHhhccCCHHHHHHHHHHHH-HHHHHHHHHHHHhhhhhhcCc-chhhhh-------hhhhhhhhhHHHHHHhhhh
Confidence 777543 333221111111111 112233444444455554442 112111 2233334444444443221
Q ss_pred cCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 005178 462 LGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDR-GVKPDDRLCGCLLSVVSLCETSEDVGKVITCL 529 (710)
Q Consensus 462 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 529 (710)
......|..|.+--...|.++.|++.--.+.+. .+-|...+|..+.-+-+....+...-+.|-++
T Consensus 1018 ---gAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkL 1083 (1189)
T KOG2041|consen 1018 ---GAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKL 1083 (1189)
T ss_pred ---hHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Confidence 012334444444455678888887765555432 35555666665544444444444444444443
No 196
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.86 E-value=0.64 Score=50.52 Aligned_cols=301 Identities=17% Similarity=0.115 Sum_probs=151.1
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005178 191 NVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNL--FDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268 (710)
Q Consensus 191 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 268 (710)
..+|+-+...+.+..|+++-..+-..-.. ....|.....-+.+..+ -+++.+.+++=.+.... ....|..+..-..
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~-~~iSy~~iA~~Ay 518 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLT-PGISYAAIARRAY 518 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCC-CceeHHHHHHHHH
Confidence 34566677778888888877665433211 13455555555555422 12333333332222222 3445666666666
Q ss_pred HcCCHHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 005178 269 KSGKVEEVLSLYERGVASGWK----PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344 (710)
Q Consensus 269 ~~g~~~~A~~~~~~~~~~g~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 344 (710)
.+|+.+-|..+++.=...+.. .+..-+...+.-+.+.|+.+-...++-.+.+. .+...|...+ .+..
T Consensus 519 ~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~l------~~~p 589 (829)
T KOG2280|consen 519 QEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMTL------RNQP 589 (829)
T ss_pred hcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHHH------Hhch
Confidence 788888888887653332211 12233445556666777777777776666542 1111111111 1112
Q ss_pred HHHHHHHHHHH----------------------------------CCCCCCHHHHHHHHHHHHhcCCHH---HH------
Q 005178 345 LARSLFDEMVE----------------------------------SGLTPDEKTLTALIKIYGKARWAK---DA------ 381 (710)
Q Consensus 345 ~A~~~~~~m~~----------------------------------~g~~p~~~~~~~li~~~~~~g~~~---~A------ 381 (710)
.|..+|.+..+ .|..|+. ......|.+..... +|
T Consensus 590 ~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~~a~sk~~s~e~ka~ed~~k 666 (829)
T KOG2280|consen 590 LALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPAL---KTAANAFAKSKEKSFEAKALEDQMK 666 (829)
T ss_pred hhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhH---HHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 22222222211 1112221 12223333332211 11
Q ss_pred -HHHHHHHHh-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 005178 382 -LELWERMRE-NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459 (710)
Q Consensus 382 -~~~~~~m~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 459 (710)
+++.+.+.. .|......+.+--+.-+...|+..+|.++-.+.+ -||...|-.-+.+++..+++++-+++-+.+
T Consensus 667 Ll~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAksk 741 (829)
T KOG2280|consen 667 LLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSK 741 (829)
T ss_pred HHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhcc
Confidence 111111111 1222222334444555666677777777666655 467777777777777777777666655443
Q ss_pred HHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 005178 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKV 525 (710)
Q Consensus 460 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 525 (710)
. ....|.-++.+|.+.|+.++|.+++-+.-. .. -.+.+|.+.|++.+|.++
T Consensus 742 k------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 742 K------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred C------CCCCchhHHHHHHhcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHH
Confidence 2 245566667777777777777777754311 11 355667777776666553
No 197
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.72 E-value=0.084 Score=44.54 Aligned_cols=92 Identities=21% Similarity=0.164 Sum_probs=46.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHH
Q 005178 333 LLEAMGKAGKPGLARSLFDEMVESGLTPD--EKTLTALIKIYGKARWAKDALELWERMRENKWP--MDFILYNTLLNMCA 408 (710)
Q Consensus 333 li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~ 408 (710)
+..++-..|+.++|+.+|++....|+... ...+..+...|...|++++|..+++........ .+......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 33445555666666666666666554433 223444555566666666666666665543211 01112222233445
Q ss_pred HcCCHHHHHHHHHHHH
Q 005178 409 DIGLVEEAERLFEDMK 424 (710)
Q Consensus 409 ~~g~~~~A~~~~~~~~ 424 (710)
..|+.++|.+.+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 5666666666555444
No 198
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.71 E-value=0.0072 Score=44.91 Aligned_cols=52 Identities=21% Similarity=0.217 Sum_probs=21.1
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005178 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSI 495 (710)
Q Consensus 443 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 495 (710)
+...|++++|...|+++++.... +...+..+..++.+.|++++|+.+|++++
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444444444444443211 33344444444444444444444444443
No 199
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.71 E-value=0.044 Score=53.61 Aligned_cols=105 Identities=13% Similarity=0.036 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CC-CHHHHHHH
Q 005178 434 YSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN--VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGV-KP-DDRLCGCL 509 (710)
Q Consensus 434 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p-~~~~~~~l 509 (710)
..|...+..+.+.|++++|...|+.+++...... ...+-.+..+|...|++++|+..|+.+++.-. .| ....+..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3455555445566777777777777776432211 24566677777778888888888887774311 11 13344455
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCcHHH
Q 005178 510 LSVVSLCETSEDVGKVITCLQQANPKLVA 538 (710)
Q Consensus 510 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 538 (710)
..++...|+.++|.++|+.+.+..|+...
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 66677788888888888888877776543
No 200
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.67 E-value=0.0067 Score=45.53 Aligned_cols=50 Identities=24% Similarity=0.258 Sum_probs=20.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 005178 410 IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461 (710)
Q Consensus 410 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (710)
.|++++|+++|+.+.... +.+...+..+..+|.+.|++++|..+++++..
T Consensus 4 ~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444444444333 23344444444444444444444444444433
No 201
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.66 E-value=0.0093 Score=44.91 Aligned_cols=61 Identities=23% Similarity=0.262 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC-CHHHHHHHHHHHH
Q 005178 434 YSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKAR-RIDDLVRVFGVSI 495 (710)
Q Consensus 434 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~ 495 (710)
..|..+...+...|++++|+..|++.++.+.. +...|..+..+|.+.| ++++|++.|++.+
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 34444444444444444444444444443211 3334444444444444 3444444444443
No 202
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.64 E-value=0.19 Score=53.29 Aligned_cols=38 Identities=32% Similarity=0.345 Sum_probs=22.3
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005178 312 RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352 (710)
Q Consensus 312 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 352 (710)
..-++++.++|-.|+... +...++-.|.+.+|-++|.+
T Consensus 620 i~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 620 ISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 334556666666566543 34555666677777666643
No 203
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.091 Score=50.94 Aligned_cols=98 Identities=11% Similarity=0.039 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHcCCCcCHHHHH
Q 005178 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG---NVDNAIELFEEMSELGVAINVMGCT 472 (710)
Q Consensus 396 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~ 472 (710)
|...|..|..+|...|+++.|..-|.+..+.. +++...+..+..++.... .-.++..+|++++..+.. |+.+..
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~ 231 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA--GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALS 231 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHH
Confidence 45555555555555555555555555555543 344444444444432211 223455555555553322 344444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 005178 473 CLIQCLGKARRIDDLVRVFGVSID 496 (710)
Q Consensus 473 ~li~~~~~~g~~~~A~~~~~~m~~ 496 (710)
.|...+...|++.+|...|+.|++
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHh
Confidence 444555555555555555555554
No 204
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.61 E-value=0.66 Score=43.90 Aligned_cols=140 Identities=15% Similarity=0.174 Sum_probs=93.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHH---
Q 005178 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML--- 440 (710)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li--- 440 (710)
+.+.++..+.-.+.+.-....+++.++...+.++.....|...-.+.|+.+.|...|++..+... +-|..+++.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh-hhhccchhHHHHhh
Confidence 34556666666777777888888888877677888888888888888888888888887766543 44444444433
Q ss_pred --HHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 005178 441 --NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCG 507 (710)
Q Consensus 441 --~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 507 (710)
..|.-.+++..|...+.+....+.. |....|.-.-+..-.|+..+|++.++.|... .|...+-+
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 2345567777777777777665433 4555555555555667788888888887763 34444333
No 205
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.60 E-value=0.092 Score=55.47 Aligned_cols=92 Identities=24% Similarity=0.288 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHH---------HHHHCCCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHcCCCC
Q 005178 187 TIFYNVTMKSLRFGRQFQLIEQLAN---------EMVSNEIELDNITYSTIITCAKRCNLF--DEAIEWFERMYKTGLMP 255 (710)
Q Consensus 187 ~~~~~~li~~~~~~g~~~~A~~l~~---------~m~~~g~~p~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~~ 255 (710)
.+.+.+-+-.|...|.+++|..+-- .+... ..+.--++..=.+|.+..+. -+.+.-++++.++|-.|
T Consensus 556 evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P 633 (1081)
T KOG1538|consen 556 EVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGETP 633 (1081)
T ss_pred cccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc
Confidence 3444555555666676666654311 11000 01222333333455544433 34444556677777666
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005178 256 DEVTYSAILDVYAKSGKVEEVLSLYERG 283 (710)
Q Consensus 256 ~~~~~~~li~~~~~~g~~~~A~~~~~~~ 283 (710)
+.... ...++-.|.+.+|-++|.+-
T Consensus 634 ~~iLl---A~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 634 NDLLL---ADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred hHHHH---HHHHHhhhhHHHHHHHHHHc
Confidence 65433 33445567777777776543
No 206
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.59 E-value=0.015 Score=44.42 Aligned_cols=64 Identities=9% Similarity=-0.013 Sum_probs=42.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHH
Q 005178 476 QCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFL 540 (710)
Q Consensus 476 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 540 (710)
..|.+.+++++|+++++.++..+.. +...+.....++.+.|++++|.+.|+.+.+..|+.....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 4566777777777777777764322 344566666677777777777777777777777665543
No 207
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.53 E-value=1 Score=45.16 Aligned_cols=120 Identities=10% Similarity=0.078 Sum_probs=72.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCc-CHHHHHHHHHHHHhc
Q 005178 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL-GVAI-NVMGCTCLIQCLGKA 481 (710)
Q Consensus 404 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p-~~~~~~~li~~~~~~ 481 (710)
..++.+.|++.++-.+++.+-+.. |.+..+.. ..+.+.|+ .++.-+++..+. .++| |..+-..+..+-...
T Consensus 270 Aralf~d~~~rKg~~ilE~aWK~e---PHP~ia~l--Y~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda 342 (531)
T COG3898 270 ARALFRDGNLRKGSKILETAWKAE---PHPDIALL--YVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDA 342 (531)
T ss_pred HHHHHhccchhhhhhHHHHHHhcC---CChHHHHH--HHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhc
Confidence 456777788888888888777654 34333322 22334444 333333333221 1233 456666677777778
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHHh
Q 005178 482 RRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSL-CETSEDVGKVITCLQQA 532 (710)
Q Consensus 482 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~ 532 (710)
|++..|..--+.... ..|....|..|...-.. .|+-.++...+.+..+.
T Consensus 343 ~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 343 GEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred cchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 888777766666554 56777777777666544 38877788777777654
No 208
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.50 E-value=1.2 Score=45.54 Aligned_cols=397 Identities=11% Similarity=0.083 Sum_probs=207.2
Q ss_pred CCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005178 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAI 263 (710)
Q Consensus 184 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 263 (710)
|.|..+|-.||..|..+|..++..+++++|..- .+--...|..-|++-...+++.....+|.+.+... .+...|...
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~--l~ldLW~lY 115 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS--LNLDLWMLY 115 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--ccHhHHHHH
Confidence 567888999999999999999999999998753 23345678888887777788888888888887763 346666666
Q ss_pred HHHHHHcCCH------HHHHHHHHHHHh-CCCCC-CHHHHHHHHHHH---H------hcCCHHHHHHHHHHHHHCCCCCC
Q 005178 264 LDVYAKSGKV------EEVLSLYERGVA-SGWKP-DPIAFSVLGKMF---G------ESGDYDGIRYVLQEMKSLGVQPN 326 (710)
Q Consensus 264 i~~~~~~g~~------~~A~~~~~~~~~-~g~~~-~~~~~~~li~~~---~------~~g~~~~A~~~~~~m~~~g~~p~ 326 (710)
++--.+.+.. ....+.|+-.+. .++.| ....|+..+..+ - .+.++|...+.+.+|....+. |
T Consensus 116 l~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~-n 194 (660)
T COG5107 116 LEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMG-N 194 (660)
T ss_pred HHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccc-c
Confidence 6554443311 111233333332 22222 233344433322 1 233455566667776653211 1
Q ss_pred H-HHHH------HHHHHHHH-------cCCHHHHHHHHHHHHH--CCCC----CCHHHHH-----------HHHHHHHhc
Q 005178 327 L-VVYN------TLLEAMGK-------AGKPGLARSLFDEMVE--SGLT----PDEKTLT-----------ALIKIYGKA 375 (710)
Q Consensus 327 ~-~~~~------~li~~~~~-------~g~~~~A~~~~~~m~~--~g~~----p~~~~~~-----------~li~~~~~~ 375 (710)
. ..|+ .=++-... .--+-.|...+++... .|+. .+..+++ ..|.--...
T Consensus 195 leklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en 274 (660)
T COG5107 195 LEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMEN 274 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcC
Confidence 1 1121 11111110 1123456666666543 2321 1222222 122211111
Q ss_pred C-----C-H-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCC
Q 005178 376 R-----W-A-KDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448 (710)
Q Consensus 376 g-----~-~-~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 448 (710)
| + . ...--+|++.... +.....+|----.-+...++-+.|......-.+. .|.... .+-..|.-..+
T Consensus 275 ~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~---spsL~~--~lse~yel~nd 348 (660)
T COG5107 275 GLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM---SPSLTM--FLSEYYELVND 348 (660)
T ss_pred CcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC---CCchhe--eHHHHHhhccc
Confidence 1 0 1 1111222332221 1112223333333334455666666555443322 122111 11111111111
Q ss_pred HHHHHHHHHHHHH--------------cCC---------------CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-
Q 005178 449 VDNAIELFEEMSE--------------LGV---------------AINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRG- 498 (710)
Q Consensus 449 ~~~A~~~~~~m~~--------------~~~---------------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~- 498 (710)
-+.....|+...+ .+. .-=..+|..+++.-.+..-++.|..+|-++.+.|
T Consensus 349 ~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~ 428 (660)
T COG5107 349 EEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGI 428 (660)
T ss_pred HHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCC
Confidence 1111111111100 011 0123456777777778788899999999999888
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHH----HHHHhhcCCcccHHHHHHHHHHhc--cCCCC--h
Q 005178 499 VKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFL----NLIEDNSTGFENIKEEFRNVIKDT--EVDAR--R 570 (710)
Q Consensus 499 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~----~~L~~~~~~~~~~~~~a~~~~~~~--~~~~~--~ 570 (710)
+.++..++++++..++ .|+..-|-++|+.-....||....+ ..|... + ..+.|..+++.. ..+.+ .
T Consensus 429 ~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~i----n-de~naraLFetsv~r~~~~q~k 502 (660)
T COG5107 429 VGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRI----N-DEENARALFETSVERLEKTQLK 502 (660)
T ss_pred CCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHh----C-cHHHHHHHHHHhHHHHHHhhhh
Confidence 5566668888887665 4666889999998888888876543 333332 2 345566666632 11222 4
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHH
Q 005178 571 PFCNCLIDICRNRNLNERAHELLYLG 596 (710)
Q Consensus 571 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 596 (710)
++|..+|+--.+.|+...+..+=+++
T Consensus 503 ~iy~kmi~YEs~~G~lN~v~sLe~rf 528 (660)
T COG5107 503 RIYDKMIEYESMVGSLNNVYSLEERF 528 (660)
T ss_pred HHHHHHHHHHHhhcchHHHHhHHHHH
Confidence 58999999999999998776555544
No 209
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.051 Score=54.69 Aligned_cols=121 Identities=8% Similarity=-0.054 Sum_probs=83.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC
Q 005178 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKAR 482 (710)
Q Consensus 403 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 482 (710)
-...|.+.|++..|..-|++....= . |.+.-+.++...... .-..++..+..+|.+.+
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l---~-----------~~~~~~~ee~~~~~~--------~k~~~~lNlA~c~lKl~ 271 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFL---E-----------YRRSFDEEEQKKAEA--------LKLACHLNLAACYLKLK 271 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHh---h-----------ccccCCHHHHHHHHH--------HHHHHhhHHHHHHHhhh
Confidence 3556777777877777777765421 0 111111122111111 22346777888999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhh
Q 005178 483 RIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDN 546 (710)
Q Consensus 483 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 546 (710)
++.+|++..++.+..+. +|.....-=..+|...|+++.|+..|+++.++.|++..+-+-|..+
T Consensus 272 ~~~~Ai~~c~kvLe~~~-~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 272 EYKEAIESCNKVLELDP-NNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKL 334 (397)
T ss_pred hHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 99999999999987643 3555666668899999999999999999999999998777666654
No 210
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.16 Score=49.33 Aligned_cols=118 Identities=11% Similarity=-0.037 Sum_probs=82.8
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC---CHHHHHHHHHHHH
Q 005178 419 LFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKAR---RIDDLVRVFGVSI 495 (710)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~ 495 (710)
-++.-...+ +-|...|-.|...|...|+++.|..-|.+..+... +|...+..+..++.... ...++..+|++++
T Consensus 144 ~Le~~L~~n--P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al 220 (287)
T COG4235 144 RLETHLQQN--PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG-DNPEILLGLAEALYYQAGQQMTAKARALLRQAL 220 (287)
T ss_pred HHHHHHHhC--CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 334444444 67888899999999999999999999988887432 35666666666554332 2457888888888
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHH
Q 005178 496 DRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFL 540 (710)
Q Consensus 496 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 540 (710)
..+.. |......|...+...|++.+|...++.|.+..|.+....
T Consensus 221 ~~D~~-~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr 264 (287)
T COG4235 221 ALDPA-NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRR 264 (287)
T ss_pred hcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchH
Confidence 74322 444566677788888999999999988888776655433
No 211
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.41 E-value=0.63 Score=43.84 Aligned_cols=55 Identities=20% Similarity=0.253 Sum_probs=24.4
Q ss_pred HHHHcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005178 266 VYAKSGKVEEVLSLYERGVASG--WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320 (710)
Q Consensus 266 ~~~~~g~~~~A~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 320 (710)
.+...|++.+|...|+.+.... -+--....-.++.++.+.|++++|...++++.+
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344555555555555554431 011122333444555555555555555555544
No 212
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.34 E-value=0.15 Score=45.13 Aligned_cols=70 Identities=21% Similarity=0.298 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----cCCCcCHHH
Q 005178 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE-----LGVAINVMG 470 (710)
Q Consensus 399 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~ 470 (710)
....++..+...|++++|..+...+.... |.+...|..+|.+|...|+..+|.++|+++.+ .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d--P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD--PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS--TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 44556667777888888888888887776 56777888888888888888888888877643 466666544
No 213
>PRK15331 chaperone protein SicA; Provisional
Probab=96.33 E-value=0.26 Score=43.51 Aligned_cols=89 Identities=15% Similarity=0.081 Sum_probs=64.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCH
Q 005178 405 NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484 (710)
Q Consensus 405 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 484 (710)
--+...|++++|+.+|.-+...+ +-+..-|..|..+|-..+++++|+..|......+. -|...+-....+|...|+.
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCH
Confidence 33456788888888888777766 45666677777777788888888888877665543 2455555667778888888
Q ss_pred HHHHHHHHHHHH
Q 005178 485 DDLVRVFGVSID 496 (710)
Q Consensus 485 ~~A~~~~~~m~~ 496 (710)
+.|...|+..++
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 888888877766
No 214
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.33 E-value=0.68 Score=43.62 Aligned_cols=45 Identities=13% Similarity=0.101 Sum_probs=23.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChH
Q 005178 474 LIQCLGKARRIDDLVRVFGVSIDRGVKPDD----RLCGCLLSVVSLCETSE 520 (710)
Q Consensus 474 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~g~~~ 520 (710)
+..-|.+.|.+..|+.-++.+++. -|+. .....++.+|.+.|..+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChH
Confidence 445566677777777777666643 1222 23344555555555544
No 215
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.07 E-value=0.099 Score=51.18 Aligned_cols=99 Identities=16% Similarity=0.123 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCCHHHHHHH
Q 005178 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPD--EVTYSAILDVYAKSGKVEEVLSLYERGVASG--WKPDPIAFSVL 298 (710)
Q Consensus 223 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g--~~~~~~~~~~l 298 (710)
..|...+..+.+.|++++|+..|+.+++...... ...+..+...|...|++++|...|+.+.+.- -+.....+-.+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3444444444555677777777777666532211 2455666667777777777777777776531 11123444445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC
Q 005178 299 GKMFGESGDYDGIRYVLQEMKSL 321 (710)
Q Consensus 299 i~~~~~~g~~~~A~~~~~~m~~~ 321 (710)
...|...|+.++|..+|+++.+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 55666777777777777777664
No 216
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.05 E-value=2.1 Score=43.85 Aligned_cols=94 Identities=12% Similarity=0.149 Sum_probs=58.3
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005178 192 VTMKSLRFGRQFQLIEQLANEMVSNE---IELDNITYSTIITCAKR---CNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265 (710)
Q Consensus 192 ~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 265 (710)
.++-.|....+++..+++.+.+...- +.-....--...-++-+ .|+.++|++++..+....-.++..+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 44446888889999999998887651 11111111122235556 7888899998888666655667788877776
Q ss_pred HHHHc---------CCHHHHHHHHHHHHh
Q 005178 266 VYAKS---------GKVEEVLSLYERGVA 285 (710)
Q Consensus 266 ~~~~~---------g~~~~A~~~~~~~~~ 285 (710)
.|-.. ...++|+..|.+.-+
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe 254 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFE 254 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHc
Confidence 66331 124555555555544
No 217
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.97 E-value=1.3 Score=45.33 Aligned_cols=30 Identities=7% Similarity=0.077 Sum_probs=15.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005178 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSID 496 (710)
Q Consensus 467 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 496 (710)
+.-.+..++.++.-.|+.++|.+..++|..
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 333444455555555555555555555554
No 218
>PRK15331 chaperone protein SicA; Provisional
Probab=95.92 E-value=0.12 Score=45.68 Aligned_cols=95 Identities=12% Similarity=0.055 Sum_probs=75.7
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 005178 438 AMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCE 517 (710)
Q Consensus 438 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 517 (710)
....-+...|++++|..+|.-+.-.+.. |..-|..|..+|-..+++++|+..|......+.. |+..+-....+|...|
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhC
Confidence 3444456899999999999998876554 6777888999999999999999999988765432 4555666788899999
Q ss_pred ChHHHHHHHHHHHHhCCc
Q 005178 518 TSEDVGKVITCLQQANPK 535 (710)
Q Consensus 518 ~~~~a~~~~~~~~~~~p~ 535 (710)
+.+.|...|+.+.+ +|.
T Consensus 120 ~~~~A~~~f~~a~~-~~~ 136 (165)
T PRK15331 120 KAAKARQCFELVNE-RTE 136 (165)
T ss_pred CHHHHHHHHHHHHh-Ccc
Confidence 99999999988876 344
No 219
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.87 E-value=0.032 Score=43.15 Aligned_cols=60 Identities=15% Similarity=0.349 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCC-cC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005178 435 SYTAMLNIYGSGGNVDNAIELFEEMSEL----GVA-IN-VMGCTCLIQCLGKARRIDDLVRVFGVS 494 (710)
Q Consensus 435 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 494 (710)
+|+.+...|...|++++|+..|++..+. |-. |+ ..++..+..+|...|++++|++++++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4555555555555555555555555431 100 11 334444555555555555555555444
No 220
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.84 E-value=4.1 Score=47.12 Aligned_cols=79 Identities=16% Similarity=0.176 Sum_probs=40.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHH--HHHHHHHHHHhc
Q 005178 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVM--GCTCLIQCLGKA 481 (710)
Q Consensus 404 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~~ 481 (710)
.+-+...+.+++|.-.|+..-+. .-.+.+|..+|+|.+|+.+..++... -+.. +-..|+.-+...
T Consensus 946 a~hL~~~~~~~~Aal~Ye~~Gkl----------ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~ 1012 (1265)
T KOG1920|consen 946 ADHLREELMSDEAALMYERCGKL----------EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQ 1012 (1265)
T ss_pred HHHHHHhccccHHHHHHHHhccH----------HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHc
Confidence 33334455555555555544321 12345566666666666666655431 1211 124455556666
Q ss_pred CCHHHHHHHHHHHH
Q 005178 482 RRIDDLVRVFGVSI 495 (710)
Q Consensus 482 g~~~~A~~~~~~m~ 495 (710)
++.-+|-++..+..
T Consensus 1013 ~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1013 RKHYEAAKILLEYL 1026 (1265)
T ss_pred ccchhHHHHHHHHh
Confidence 66666666665543
No 221
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.75 E-value=0.029 Score=37.74 Aligned_cols=41 Identities=5% Similarity=0.010 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHh
Q 005178 505 LCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIED 545 (710)
Q Consensus 505 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~ 545 (710)
++..+..+|.+.|++++|+++|+++.+..|++..+...|+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 56678888889999999999999999999988887776654
No 222
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.74 E-value=0.07 Score=40.54 Aligned_cols=53 Identities=17% Similarity=0.232 Sum_probs=21.9
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005178 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496 (710)
Q Consensus 443 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 496 (710)
|.+.+++++|.+++++++..+.. +...|.....++.+.|++++|...|+...+
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34444444444444444443221 333333344444444444444444444443
No 223
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.69 E-value=2 Score=40.75 Aligned_cols=205 Identities=18% Similarity=0.087 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-
Q 005178 328 VVYNTLLEAMGKAGKPGLARSLFDEMVES-GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN- 405 (710)
Q Consensus 328 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~- 405 (710)
..+......+...+++..+...+...... ........+..+...+...+.+..+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 34444444555555555555555444431 112233344444444455555555555555555432222 111111122
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCH
Q 005178 406 MCADIGLVEEAERLFEDMKLSDYC-KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484 (710)
Q Consensus 406 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 484 (710)
.+...|+++.|...+.+....... ......+......+...++.+.+...+.++...........+..+...+...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 555666666666666666442100 0123333334444556666677777666666532211345566666666666677
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCc
Q 005178 485 DDLVRVFGVSIDRGVKPD-DRLCGCLLSVVSLCETSEDVGKVITCLQQANPK 535 (710)
Q Consensus 485 ~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 535 (710)
+.|...+...... .|+ ...+..+...+...+..+++...+.......|.
T Consensus 219 ~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 219 EEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 7777777766653 222 233333444444555667777777766666665
No 224
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.69 E-value=0.047 Score=42.21 Aligned_cols=65 Identities=12% Similarity=0.068 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC---CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 005178 468 VMGCTCLIQCLGKARRIDDLVRVFGVSIDR--GVK---PD-DRLCGCLLSVVSLCETSEDVGKVITCLQQA 532 (710)
Q Consensus 468 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~---p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 532 (710)
..+|+.+...|...|++++|+..|++.++. ... |+ ..++..+..+|...|++++|.+++++..++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 357888999999999999999999998843 122 22 347788889999999999999999887653
No 225
>PRK11906 transcriptional regulator; Provisional
Probab=95.55 E-value=1.4 Score=45.95 Aligned_cols=86 Identities=16% Similarity=0.027 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHH
Q 005178 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR-LCGCLLSVVSLCETSEDVGKVIT 527 (710)
Q Consensus 449 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~ 527 (710)
..+|.++-++..+.+.. |......+..++...|+++.|...|++... +.||.. +|....-.+..+|+.++|.+.++
T Consensus 320 ~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 320 AQKALELLDYVSDITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44566666666665443 666666666666666777777777777665 344433 44444445556777777777777
Q ss_pred HHHHhCCcHH
Q 005178 528 CLQQANPKLV 537 (710)
Q Consensus 528 ~~~~~~p~~~ 537 (710)
+..+++|.-.
T Consensus 397 ~alrLsP~~~ 406 (458)
T PRK11906 397 KSLQLEPRRR 406 (458)
T ss_pred HHhccCchhh
Confidence 7777777643
No 226
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.54 E-value=2.2 Score=42.40 Aligned_cols=128 Identities=14% Similarity=0.099 Sum_probs=73.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCHH----
Q 005178 332 TLLEAMGKAGKPGLARSLFDEMVESGL-----TPDEKTLTALIKIYGKARWAKDALELWERMRE----NKWPMDFI---- 398 (710)
Q Consensus 332 ~li~~~~~~g~~~~A~~~~~~m~~~g~-----~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~---- 398 (710)
+|..++...+.++++++.|+...+... .....+|..|...|.+..++++|.-+..+..+ .++. |..
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr 205 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSLKYR 205 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHHHH
Confidence 355566666667777777776554211 11234566777777777777777665554432 2222 211
Q ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005178 399 --LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDN----YSYTAMLNIYGSGGNVDNAIELFEEMS 460 (710)
Q Consensus 399 --~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~ 460 (710)
....|.-++-..|.+..|.+.-++..+.....-|. .....+.+.|...|+.+.|+.-|++..
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 12233445566777777777766654432212233 344567777888888888887777654
No 227
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.54 E-value=0.08 Score=46.94 Aligned_cols=57 Identities=21% Similarity=0.301 Sum_probs=29.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005178 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEM 318 (710)
Q Consensus 261 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 318 (710)
..++..+...|++++|..+.+.+.... +.|...|..+|.+|...|+..+|.++|+++
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 344444555555555555555555442 334555555555555555555555555554
No 228
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.28 E-value=0.27 Score=41.89 Aligned_cols=48 Identities=19% Similarity=0.280 Sum_probs=25.2
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCcCHHHHHHHHHH
Q 005178 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE-LGVAINVMGCTCLIQC 477 (710)
Q Consensus 430 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~li~~ 477 (710)
.|+..+..+++.+|+..|++..|+++.+...+ .+++.+..+|..|+.-
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 45555555555555555555555555555433 2444445555555543
No 229
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.26 E-value=0.19 Score=52.01 Aligned_cols=65 Identities=12% Similarity=-0.088 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 005178 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDN---YSYTAMLNIYGSGGNVDNAIELFEEMSEL 462 (710)
Q Consensus 396 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 462 (710)
+...++.+..+|...|++++|+..|++..+.+ +.+. .+|..+..+|...|+.++|+..++++++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46677777777777777777777777777654 2223 34777777777777777777777777763
No 230
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.25 E-value=1.5 Score=43.49 Aligned_cols=132 Identities=17% Similarity=0.120 Sum_probs=71.1
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHc-----CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHHHHH
Q 005178 437 TAMLNIYGSGGNVDNAIELFEEMSEL-----GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID----RGVKPDDRLCG 507 (710)
Q Consensus 437 ~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~~~~~~ 507 (710)
.+|..++...+.++++++.|+...+. +.-....+|..|...|.+..++++|+-+..+..+ .+++.-..-|.
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 44566666677777777777776542 1112245677777778888888877766665543 23221111222
Q ss_pred H-----HHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHHHHhccCCCChh-hHHHHHHHHH
Q 005178 508 C-----LLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRP-FCNCLIDICR 581 (710)
Q Consensus 508 ~-----ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~l~~~~~ 581 (710)
+ |..++-..|...+|.+.- +||-++--.++..+--. ..-++.|.|+
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C----------------------------~Ea~klal~~Gdra~~arc~~~~aDIyR 257 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECC----------------------------EEAMKLALQHGDRALQARCLLCFADIYR 257 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHH----------------------------HHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 2 222333344444443333 33433333333332211 3356778888
Q ss_pred hCCCHHHHHHHHHHH
Q 005178 582 NRNLNERAHELLYLG 596 (710)
Q Consensus 582 ~~g~~~~A~~~~~~~ 596 (710)
..|+.|.|..-++.+
T Consensus 258 ~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 258 SRGDLERAFRRYEQA 272 (518)
T ss_pred hcccHhHHHHHHHHH
Confidence 888888877666654
No 231
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.20 E-value=2.9 Score=39.57 Aligned_cols=202 Identities=18% Similarity=0.099 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005178 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSL-GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK 370 (710)
Q Consensus 292 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 370 (710)
...+......+...+.+..+...+...... ........+..+...+...+++..+.+.+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 344455555555556666555555555431 112233444455555555555666666666655432222 111112222
Q ss_pred -HHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHhC
Q 005178 371 -IYGKARWAKDALELWERMRENKW--PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP-DNYSYTAMLNIYGSG 446 (710)
Q Consensus 371 -~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~ 446 (710)
.+...|+++.|...|.+...... ......+......+...++.+.+...+....... +. ....+..+...+...
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN--PDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC--cccchHHHHHhhHHHHHc
Confidence 56666777777777776644211 1123333344444566777788888877777654 33 466777777777777
Q ss_pred CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005178 447 GNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDR 497 (710)
Q Consensus 447 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 497 (710)
++++.|...+......... ....+..+...+...|..+++...+.+....
T Consensus 216 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 216 GKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred ccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8888888888877763222 2344444444455666788888888777653
No 232
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.08 E-value=4.8 Score=41.41 Aligned_cols=139 Identities=16% Similarity=0.192 Sum_probs=100.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHH-HHHH
Q 005178 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG-CTCL 474 (710)
Q Consensus 396 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~l 474 (710)
-..+|...+..-.+..-++.|..+|-+..+.++..+++..++++|..++. |+..-|..+|+--... -||... -+..
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~ky 472 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKY 472 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHH
Confidence 45667777877777788888888888888888667888888888886654 6677788888764442 234333 3455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHH
Q 005178 475 IQCLGKARRIDDLVRVFGVSIDRGVKPD--DRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVA 538 (710)
Q Consensus 475 i~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 538 (710)
+.-+...|+-..|..+|+..+.. +.-+ ..+|..++..-..-|+...+..+-+.+...-|....
T Consensus 473 l~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~ 537 (660)
T COG5107 473 LLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENL 537 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhH
Confidence 66677888888888888865532 2222 347888888888888888888888888888777644
No 233
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.97 E-value=5.2 Score=41.29 Aligned_cols=141 Identities=13% Similarity=0.112 Sum_probs=70.9
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCc----HHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHH
Q 005178 160 ILNSLKFWQKSYFFFNWIKSQNLFPME----TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIIT--CAK 233 (710)
Q Consensus 160 ~l~~l~~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~--~~~ 233 (710)
++...+++.+|..+|.++-....-.|. ....+.++++|... +.+.....+.+..+. .| ...|-.+.. .+-
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHH
Confidence 445555677777777776544221111 12234555555433 444444444444433 12 222333333 233
Q ss_pred HcCCHHHHHHHHHHHHHc--CCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCCHHHH
Q 005178 234 RCNLFDEAIEWFERMYKT--GLMP------------DEVTYSAILDVYAKSGKVEEVLSLYERGVAS----GWKPDPIAF 295 (710)
Q Consensus 234 ~~g~~~~A~~~~~~m~~~--g~~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~~~~~~~~ 295 (710)
+.+.+++|++.+...... +..+ |...=+..+..+...|++.++..+++++... .+.-+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 566677777776665544 2211 1112244555666777777777776666543 233566666
Q ss_pred HHHHHHHHh
Q 005178 296 SVLGKMFGE 304 (710)
Q Consensus 296 ~~li~~~~~ 304 (710)
+.++-++++
T Consensus 171 d~~vlmlsr 179 (549)
T PF07079_consen 171 DRAVLMLSR 179 (549)
T ss_pred HHHHHHHhH
Confidence 665555544
No 234
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.93 E-value=0.2 Score=47.71 Aligned_cols=30 Identities=37% Similarity=0.478 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005178 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337 (710)
Q Consensus 308 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 337 (710)
++=....++.|.+.|++.|..+|+.|++.+
T Consensus 88 veFIy~ALk~m~eyGVerDl~vYk~Llnvf 117 (406)
T KOG3941|consen 88 VEFIYTALKYMKEYGVERDLDVYKGLLNVF 117 (406)
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHhC
Confidence 333444445555555555555555555544
No 235
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.91 E-value=0.45 Score=40.58 Aligned_cols=53 Identities=8% Similarity=0.007 Sum_probs=41.2
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHh
Q 005178 463 GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSI-DRGVKPDDRLCGCLLSVVSL 515 (710)
Q Consensus 463 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~~p~~~~~~~ll~~~~~ 515 (710)
...|+..+..+++.+|+..|++..|+++.+... ..++..+..+|..|+.=+..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 456788888888888888888888888888877 56777777788887764443
No 236
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.88 E-value=1.6 Score=43.00 Aligned_cols=154 Identities=10% Similarity=0.046 Sum_probs=100.6
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHH
Q 005178 339 KAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN---KWPMDFILYNTLLNMCADIGLVEE 415 (710)
Q Consensus 339 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~~~ 415 (710)
-.|+..+|-..++++++. .+.|...+...=.+|...|+.+.-...++++... +++.....-..+.-++..+|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 456677777777777654 3566777777777788888888777777777654 222222222333444557788888
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc---CCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005178 416 AERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL---GVAINVMGCTCLIQCLGKARRIDDLVRVFG 492 (710)
Q Consensus 416 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 492 (710)
|++.-++..+.+ +.|...-.++...+...|+..++.++..+-... +--.-..-|-...-.+...+.++.|+++|+
T Consensus 194 AEk~A~ralqiN--~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 194 AEKQADRALQIN--RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred HHHHHHhhccCC--CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 888888887776 577777788888888888888888876654331 000012234444445666788888888887
Q ss_pred HHH
Q 005178 493 VSI 495 (710)
Q Consensus 493 ~m~ 495 (710)
.-+
T Consensus 272 ~ei 274 (491)
T KOG2610|consen 272 REI 274 (491)
T ss_pred HHH
Confidence 544
No 237
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.87 E-value=1.2 Score=48.02 Aligned_cols=96 Identities=18% Similarity=0.164 Sum_probs=58.3
Q ss_pred HHHHHHHHHHc----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHcC---CCCCHHHH
Q 005178 189 FYNVTMKSLRF----GRQFQLIEQLANEMVSNEIELDNITYSTIIT-CAKRCNLFDEAIEWFERMYKTG---LMPDEVTY 260 (710)
Q Consensus 189 ~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~ 260 (710)
.|+.++..+.- ....+.|.++++.+..+ -|+...|...-. .+...|++++|++.|++..... .+.....+
T Consensus 231 ~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~ 308 (468)
T PF10300_consen 231 WYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCY 308 (468)
T ss_pred HHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHH
Confidence 34444444432 45677888888888876 577776665554 6667788888888888655321 01122333
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005178 261 SAILDVYAKSGKVEEVLSLYERGVAS 286 (710)
Q Consensus 261 ~~li~~~~~~g~~~~A~~~~~~~~~~ 286 (710)
--+.-.+.-.++|++|...|.++.+.
T Consensus 309 ~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 309 FELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 34444555666777777777766654
No 238
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.77 E-value=2.1 Score=37.46 Aligned_cols=40 Identities=3% Similarity=-0.044 Sum_probs=16.0
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005178 193 TMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233 (710)
Q Consensus 193 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~ 233 (710)
++..+...+.+......++.+...+. .+....+.++..|+
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~ 52 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYA 52 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHH
Confidence 33333333444444444444443331 23334444444443
No 239
>PRK11906 transcriptional regulator; Provisional
Probab=94.77 E-value=2.5 Score=44.05 Aligned_cols=144 Identities=13% Similarity=0.058 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHh-CCCCCC-HHHHHHHHHHHHH---------cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhC
Q 005178 378 AKDALELWERMRE-NKWPMD-FILYNTLLNMCAD---------IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446 (710)
Q Consensus 378 ~~~A~~~~~~m~~-~~~~~~-~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 446 (710)
.+.|+.+|.+... ....|+ ...|..+..++.. .....+|.++-+...+.+ +.|......+..+....
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld--~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT--TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhh
Confidence 4567777777762 123333 2333333322221 234567788888888887 68888888888888888
Q ss_pred CCHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCChHHH
Q 005178 447 GNVDNAIELFEEMSELGVAIN-VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR---LCGCLLSVVSLCETSEDV 522 (710)
Q Consensus 447 g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~g~~~~a 522 (710)
|+++.|...|++....+ || ..+|......+.-+|+.++|.+.+++.++ ..|... +....+..|...+- ++|
T Consensus 352 ~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~~~~~~~~~~~~~~~~~~~-~~~ 426 (458)
T PRK11906 352 GQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRRRKAVVIKECVDMYVPNPL-KNN 426 (458)
T ss_pred cchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchhhHHHHHHHHHHHHcCCch-hhh
Confidence 88999999999988843 54 45566666667778999999999998765 334322 33334446666665 677
Q ss_pred HHHHHH
Q 005178 523 GKVITC 528 (710)
Q Consensus 523 ~~~~~~ 528 (710)
+++|-+
T Consensus 427 ~~~~~~ 432 (458)
T PRK11906 427 IKLYYK 432 (458)
T ss_pred HHHHhh
Confidence 766544
No 240
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.76 E-value=0.37 Score=49.88 Aligned_cols=68 Identities=16% Similarity=-0.065 Sum_probs=57.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005178 359 TPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDF--ILYNTLLNMCADIGLVEEAERLFEDMKLS 426 (710)
Q Consensus 359 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 426 (710)
+.+...++.+..+|.+.|++++|+..|++.++.+..... .+|..+..+|...|++++|++.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345778999999999999999999999999886443221 46899999999999999999999999875
No 241
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.76 E-value=1.7 Score=46.76 Aligned_cols=117 Identities=18% Similarity=0.185 Sum_probs=65.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHcC---CCcCHHHHHHHHHHHHhcCCHHH
Q 005178 411 GLVEEAERLFEDMKLSDYCKPDNYSYTA-MLNIYGSGGNVDNAIELFEEMSELG---VAINVMGCTCLIQCLGKARRIDD 486 (710)
Q Consensus 411 g~~~~A~~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~li~~~~~~g~~~~ 486 (710)
...+.|.++++.+.+.- |+...|.. -...+...|++++|++.|++..... .+.....+--+..++.-.+++++
T Consensus 247 ~~~~~a~~lL~~~~~~y---P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRY---PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 45666777777766543 45444433 3345556677777777777544311 11233445555666777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHH-HHHhcCCh-------HHHHHHHHHHHH
Q 005178 487 LVRVFGVSIDRGVKPDDRLCGCLLS-VVSLCETS-------EDVGKVITCLQQ 531 (710)
Q Consensus 487 A~~~~~~m~~~~~~p~~~~~~~ll~-~~~~~g~~-------~~a~~~~~~~~~ 531 (710)
|...|..+.+.. .....+|..+.. ++...|+. ++|.++|+++.+
T Consensus 324 A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 324 AAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 777777777532 223444444333 33446665 677777776643
No 242
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.74 E-value=3.5 Score=40.14 Aligned_cols=50 Identities=14% Similarity=0.245 Sum_probs=22.1
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005178 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEM 318 (710)
Q Consensus 268 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 318 (710)
...|++.+|..+|+...... +-+...--.|+.+|...|+.+.|..++..+
T Consensus 145 ~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred hhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 34455555555555444431 122233334444444444444444444444
No 243
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.56 E-value=0.29 Score=46.63 Aligned_cols=104 Identities=19% Similarity=0.246 Sum_probs=51.2
Q ss_pred CCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 005178 220 LDNITYSTIITCAKR-----CNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIA 294 (710)
Q Consensus 220 p~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~ 294 (710)
-|-.+|-..+..+.. .+.++-....++.|.+.|+..|..+|+.|++.+-+..- .|.. .
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~n-v 127 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQN-V 127 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccHH-H
Confidence 355666666555433 24445555555666666666666666666655433211 1111 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 005178 295 FSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342 (710)
Q Consensus 295 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 342 (710)
+....-.|-+ +-+-+++++++|...|+.||..+-..|++++++.+.
T Consensus 128 fQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 128 FQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 1111111111 123355666666666666666666666666655543
No 244
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.55 E-value=1 Score=47.79 Aligned_cols=154 Identities=16% Similarity=0.128 Sum_probs=69.4
Q ss_pred HHcCCHHHHHHHHH--HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 005178 233 KRCNLFDEAIEWFE--RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDG 310 (710)
Q Consensus 233 ~~~g~~~~A~~~~~--~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 310 (710)
.-.++++++.++.+ ++.. . -...-.+.++..+-+.|..+.|+++-..-. .-.....+.|+++.
T Consensus 272 v~~~d~~~v~~~i~~~~ll~-~--i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLP-N--IPKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDI 336 (443)
T ss_dssp HHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHH
T ss_pred HHcCChhhhhhhhhhhhhcc-c--CChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHH
Confidence 34566666655553 1111 0 123445566666666666666665533221 11233445566666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005178 311 IRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390 (710)
Q Consensus 311 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 390 (710)
|.++.++. .+...|..|.+...+.|+++-|.+.|.+..+ |..|+-.|.-.|+.+.-.++.+....
T Consensus 337 A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 337 ALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 65554332 2455666666666666666666666655432 34444555555555555555554444
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005178 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFED 422 (710)
Q Consensus 391 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 422 (710)
.|- ++....++...|++++..+++.+
T Consensus 402 ~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 402 RGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp TT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred ccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 321 33334444445555555555444
No 245
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.52 E-value=1.2 Score=45.27 Aligned_cols=138 Identities=14% Similarity=0.073 Sum_probs=83.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 005178 333 LLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412 (710)
Q Consensus 333 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 412 (710)
-.+.|.+.|++..|..-|+..+.. +. |.+.-+.++..... .+ -...++.+.-+|.+.++
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~~~-~~-------k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKKAE-AL-------KLACHLNLAACYLKLKE 272 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHHHH-HH-------HHHHhhHHHHHHHhhhh
Confidence 346788888888888888876642 00 11111112211111 11 22346667777888888
Q ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHhcCCHHH-HHHH
Q 005178 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN-VMGCTCLIQCLGKARRIDD-LVRV 490 (710)
Q Consensus 413 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~-A~~~ 490 (710)
+..|++..+...+.+ ++|+.....-..+|...|+++.|+..|+++++. .|+ -..-+.|+.+-.+..+..+ ..++
T Consensus 273 ~~~Ai~~c~kvLe~~--~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~ 348 (397)
T KOG0543|consen 273 YKEAIESCNKVLELD--PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKM 348 (397)
T ss_pred HHHHHHHHHHHHhcC--CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888777 677777777788888888888888888888773 343 3333444444334333332 3555
Q ss_pred HHHHH
Q 005178 491 FGVSI 495 (710)
Q Consensus 491 ~~~m~ 495 (710)
|..|.
T Consensus 349 y~~mF 353 (397)
T KOG0543|consen 349 YANMF 353 (397)
T ss_pred HHHHh
Confidence 66555
No 246
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.51 E-value=2.1 Score=36.12 Aligned_cols=64 Identities=20% Similarity=0.363 Sum_probs=34.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 005178 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465 (710)
Q Consensus 400 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 465 (710)
....++.+...|+-++-.+++.++.+.+ .+++.....+..+|.+.|+..++.+++.++-+.|++
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~--~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNE--EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3344555666666666666666665433 466666666666666666666666666666665543
No 247
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.43 E-value=3.1 Score=36.31 Aligned_cols=20 Identities=30% Similarity=0.519 Sum_probs=7.8
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 005178 368 LIKIYGKARWAKDALELWER 387 (710)
Q Consensus 368 li~~~~~~g~~~~A~~~~~~ 387 (710)
++..|.+.+.++++..++.+
T Consensus 75 ~~~~c~~~~l~~~~~~l~~k 94 (140)
T smart00299 75 VGKLCEKAKLYEEAVELYKK 94 (140)
T ss_pred HHHHHHHcCcHHHHHHHHHh
Confidence 33333334444444443333
No 248
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.41 E-value=3.3 Score=43.33 Aligned_cols=57 Identities=16% Similarity=0.105 Sum_probs=30.0
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005178 438 AMLNIYGSGGNVDNAIELFEEMSELGVA-INVMGCTCLIQCLGKARRIDDLVRVFGVS 494 (710)
Q Consensus 438 ~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m 494 (710)
.+..++.+.|+.++|++.+++|.+.... -+......|+.++...+.+.++..++.+.
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 3444455556666666666665542211 12334455556666666666666665554
No 249
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.35 E-value=0.55 Score=49.75 Aligned_cols=57 Identities=18% Similarity=0.282 Sum_probs=27.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005178 256 DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321 (710)
Q Consensus 256 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 321 (710)
+...|..|.+...+.|+++-|++.|.+..+ |..|+-.|.-.|+.+...++.+.....
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 444555555555555555555555554432 334444444555554444444444433
No 250
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.34 E-value=7.4 Score=40.22 Aligned_cols=65 Identities=9% Similarity=0.069 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 005178 397 FILYNTLLNMCADIGLVEEAERLFEDMKLSDYC--KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461 (710)
Q Consensus 397 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (710)
..+|..++..+-+.|.++.|...+..+...+.. .........-+......|+..+|+..+++...
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345666666666677777777666666653310 01233334444555566666666666666655
No 251
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.15 E-value=9.7 Score=40.89 Aligned_cols=106 Identities=12% Similarity=0.033 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005178 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511 (710)
Q Consensus 432 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 511 (710)
+..+|...++--...|+.+.+.-+|++..-. +..=...|-..+.-....|+.+-|..++....+.-++-...+--.-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 3456666666666667776666666665431 001123344444444444666666666655544322222222111122
Q ss_pred HHHhcCChHHHHHHHHHHHHhCCcHHH
Q 005178 512 VVSLCETSEDVGKVITCLQQANPKLVA 538 (710)
Q Consensus 512 ~~~~~g~~~~a~~~~~~~~~~~p~~~~ 538 (710)
.+...|++..|..+++.+.+.-|+...
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~pg~v~ 401 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEYPGLVE 401 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhCCchhh
Confidence 234456677777777766654466544
No 252
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.95 E-value=7.4 Score=38.75 Aligned_cols=63 Identities=17% Similarity=0.118 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 005178 293 IAFSVLGKMFGESGDYD---GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356 (710)
Q Consensus 293 ~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 356 (710)
.++..++.+|...+..+ +|..+++.+.... .-...++..-+..+.+.++.+++.+++..|+..
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 34555666666655543 3444555554332 112334444455555567777777777777654
No 253
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.82 E-value=1.2 Score=42.79 Aligned_cols=95 Identities=12% Similarity=0.044 Sum_probs=48.1
Q ss_pred hCCCHHHHHHHHHHHHHcCCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCH-HHHHHHHHHHHhcCChH
Q 005178 445 SGGNVDNAIELFEEMSELGVAI--NVMGCTCLIQCLGKARRIDDLVRVFGVSID-RGVKPDD-RLCGCLLSVVSLCETSE 520 (710)
Q Consensus 445 ~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~-~~~~~ll~~~~~~g~~~ 520 (710)
+.|++..|...|...++....- ....+--|..++...|++++|..+|..+.+ .+-.|.. ..+--|..+..+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 3444555555555555532110 122333355556666666666666655553 2222221 34444555555666666
Q ss_pred HHHHHHHHHHHhCCcHHHH
Q 005178 521 DVGKVITCLQQANPKLVAF 539 (710)
Q Consensus 521 ~a~~~~~~~~~~~p~~~~~ 539 (710)
+|...|+++.+.-|+....
T Consensus 233 ~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 233 EACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHHHHHHHHCCCCHHH
Confidence 6666666666666655443
No 254
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.75 E-value=3.7 Score=34.69 Aligned_cols=59 Identities=22% Similarity=0.255 Sum_probs=23.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 005178 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357 (710)
Q Consensus 298 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 357 (710)
.+..+...|+-+.-.+++.++.+.+ ++++...-.+..+|.+.|+..++.+++.+.-+.|
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3344444444444444444443321 3344444444444444444444444444444444
No 255
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.71 E-value=9.8 Score=39.40 Aligned_cols=393 Identities=12% Similarity=0.064 Sum_probs=196.2
Q ss_pred HHHHHHHHHHHHhCCCCCCcHHHHHHHHHH--HHccCChHHHHHHHHHHHHC--CCCC------------CHHHHHHHHH
Q 005178 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKS--LRFGRQFQLIEQLANEMVSN--EIEL------------DNITYSTIIT 230 (710)
Q Consensus 167 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~l~~~m~~~--g~~p------------~~~~~~~li~ 230 (710)
.+.-...+..+++..+..+ |-.+..+ +-+.+.+++|.+.+.....+ +..+ |...=+..+.
T Consensus 61 ld~Me~~l~~l~~~~~~s~----~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~ 136 (549)
T PF07079_consen 61 LDLMEKQLMELRQQFGKSA----YLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAH 136 (549)
T ss_pred HHHHHHHHHHHHHhcCCch----HHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHH
Confidence 4444444455555543222 3333333 35788899999888777654 2221 2233345566
Q ss_pred HHHHcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHHcCC---------------HHHHHHHHHHHHhC-----
Q 005178 231 CAKRCNLFDEAIEWFERMYKT----GLMPDEVTYSAILDVYAKSGK---------------VEEVLSLYERGVAS----- 286 (710)
Q Consensus 231 ~~~~~g~~~~A~~~~~~m~~~----g~~~~~~~~~~li~~~~~~g~---------------~~~A~~~~~~~~~~----- 286 (710)
++...|++.++..++++|... ...-+..+|+.++-++++.-- ++.+.-...+|...
T Consensus 137 sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y 216 (549)
T PF07079_consen 137 SLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPY 216 (549)
T ss_pred HHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchH
Confidence 888999999999999888764 334688899887776655321 12222222222211
Q ss_pred -CCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC---
Q 005178 287 -GWKPDPIAFSVLGKMFGES--GDYDGIRYVLQEMKSLGVQPNLV-VYNTLLEAMGKAGKPGLARSLFDEMVESGLT--- 359 (710)
Q Consensus 287 -g~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--- 359 (710)
.+.|.......++....-. .+..--.++++.-...-+.|+-. +...|+..+.+ +.+++..+-+.+....+.
T Consensus 217 ~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lk 294 (549)
T PF07079_consen 217 EKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLK 294 (549)
T ss_pred HhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHH
Confidence 1223333333333322211 11112222222222222344432 23344444433 444444444433322111
Q ss_pred -CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-------HHHHHHHHH----HcCCHHHHHHHHHHHHhCC
Q 005178 360 -PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL-------YNTLLNMCA----DIGLVEEAERLFEDMKLSD 427 (710)
Q Consensus 360 -p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-------~~~li~~~~----~~g~~~~A~~~~~~~~~~~ 427 (710)
.=..+|..++....+.++-..|.+.+.-+.-.. |+... -..+.+..+ ...+...-+.+++.+...+
T Consensus 295 e~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld--p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~D 372 (549)
T PF07079_consen 295 EELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD--PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYD 372 (549)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC--CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc
Confidence 123467778888888888888888877766532 22111 112222222 1123334445555554433
Q ss_pred CCCCCHH-HHHHHHH---HHHhCCC-HHHHHHHHHHHHHcCCCcCHHHHHHHH----HHHHh---cCCHHHHHHHHHHHH
Q 005178 428 YCKPDNY-SYTAMLN---IYGSGGN-VDNAIELFEEMSELGVAINVMGCTCLI----QCLGK---ARRIDDLVRVFGVSI 495 (710)
Q Consensus 428 ~~~~~~~-~~~~li~---~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~li----~~~~~---~g~~~~A~~~~~~m~ 495 (710)
+ |.. .-.-|+. -+.+.|. -++|+.+++.+.+... -|..+-|.+. .+|.+ ...+.+-+++-+-+.
T Consensus 373 i---DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~-yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~ 448 (549)
T PF07079_consen 373 I---DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTN-YDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFIT 448 (549)
T ss_pred c---cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 2 221 2222222 2445555 6778888888776311 1333322222 22322 122333444444444
Q ss_pred HCCCCCCH----HHHHHHHHH--HHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHHHHhccCCCC
Q 005178 496 DRGVKPDD----RLCGCLLSV--VSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDAR 569 (710)
Q Consensus 496 ~~~~~p~~----~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~~~~~~~~ 569 (710)
+.|+.|-. ..-|.|..| +...|++.++.-+-.-+.++.| ...+..++|-|..... ..++|.+++..++. +
T Consensus 449 e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k-~Y~eA~~~l~~LP~--n 524 (549)
T PF07079_consen 449 EVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENK-RYQEAWEYLQKLPP--N 524 (549)
T ss_pred hcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHh-hHHHHHHHHHhCCC--c
Confidence 66776633 244444433 3456777777666555667777 5566677777665444 66777777777654 3
Q ss_pred hhhHHH
Q 005178 570 RPFCNC 575 (710)
Q Consensus 570 ~~~~~~ 575 (710)
..+|++
T Consensus 525 ~~~~ds 530 (549)
T PF07079_consen 525 ERMRDS 530 (549)
T ss_pred hhhHHH
Confidence 335544
No 256
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.52 E-value=5.7 Score=39.26 Aligned_cols=153 Identities=11% Similarity=0.056 Sum_probs=98.9
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHH
Q 005178 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP----IAFSVLGKMFGESGDYD 309 (710)
Q Consensus 234 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~ 309 (710)
..|+..+|-..++++++.- +.|...++..=++|.-.|+.+.-...++++... +.+|. .+...+.-++..+|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3567777777777777753 337777777778888888888888888887754 23443 33334444556788888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHH
Q 005178 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD---EKTLTALIKIYGKARWAKDALELWE 386 (710)
Q Consensus 310 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~ 386 (710)
+|.+.-++..+.+ +.|...-.++...+--.|+..++.++..+-...=-..+ ..-|--..-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 8888888887754 34666777778888888888888877655432100000 1112222233455688888888887
Q ss_pred HHH
Q 005178 387 RMR 389 (710)
Q Consensus 387 ~m~ 389 (710)
.-.
T Consensus 272 ~ei 274 (491)
T KOG2610|consen 272 REI 274 (491)
T ss_pred HHH
Confidence 543
No 257
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.51 E-value=0.23 Score=30.94 Aligned_cols=33 Identities=9% Similarity=-0.118 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcH
Q 005178 504 RLCGCLLSVVSLCETSEDVGKVITCLQQANPKL 536 (710)
Q Consensus 504 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 536 (710)
.+|..+..+|...|++++|+..|+++.+++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 356677777777788888888888877777763
No 258
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.42 E-value=2.6 Score=35.45 Aligned_cols=55 Identities=9% Similarity=0.024 Sum_probs=28.1
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005178 196 SLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKT 251 (710)
Q Consensus 196 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 251 (710)
+++..|+++.|++.|.+.+..- +-....||.-..++.-.|+.++|++=+++..+.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 3445555555555555554431 124445555555555555555555555555443
No 259
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.25 E-value=16 Score=40.45 Aligned_cols=18 Identities=0% Similarity=-0.060 Sum_probs=10.6
Q ss_pred HccCChHHHHHHHHHHHH
Q 005178 198 RFGRQFQLIEQLANEMVS 215 (710)
Q Consensus 198 ~~~g~~~~A~~l~~~m~~ 215 (710)
....+++.|...|..+.+
T Consensus 260 g~~~d~e~a~~~l~~aa~ 277 (552)
T KOG1550|consen 260 GVTQDLESAIEYLKLAAE 277 (552)
T ss_pred cccccHHHHHHHHHHHHH
Confidence 344566666666666654
No 260
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.14 E-value=9.2 Score=37.38 Aligned_cols=53 Identities=17% Similarity=0.140 Sum_probs=25.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005178 301 MFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMV 354 (710)
Q Consensus 301 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 354 (710)
.....|++.+|..+|....+..- -+...--.|+.+|...|+.+.|..++..+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAP-ENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 34445555555555555544321 122333344555555555555555555443
No 261
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.06 E-value=2 Score=36.04 Aligned_cols=89 Identities=16% Similarity=0.090 Sum_probs=47.2
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCcCH---HHHHHHHHHHHhcC
Q 005178 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL-GVAINV---MGCTCLIQCLGKAR 482 (710)
Q Consensus 407 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~---~~~~~li~~~~~~g 482 (710)
++..|+++.|++.|.+....- +.....||.-..+|.-.|+.++|+.=+++..+. |-+ .. ..|..-...|...|
T Consensus 53 laE~g~Ld~AlE~F~qal~l~--P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLA--PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHhccchHHHHHHHHHHHHhc--ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 445566666666666655443 455566666666666666666666666665552 211 11 12222233455556
Q ss_pred CHHHHHHHHHHHHHCC
Q 005178 483 RIDDLVRVFGVSIDRG 498 (710)
Q Consensus 483 ~~~~A~~~~~~m~~~~ 498 (710)
+-|.|..=|+...+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 6666666555554443
No 262
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.80 E-value=11 Score=37.58 Aligned_cols=129 Identities=19% Similarity=0.300 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHHcCC--
Q 005178 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGK--AR----WAKDALELWERMRENKWP---MDFILYNTLLNMCADIGL-- 412 (710)
Q Consensus 344 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~--~g----~~~~A~~~~~~m~~~~~~---~~~~~~~~li~~~~~~g~-- 412 (710)
++...+++.|.+.|+..+..+|-+....... .. ....|..+|+.|++...- ++...+..|+.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 4455566666666666665555442222222 11 244566677777664321 233344444332 2222
Q ss_pred --HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhC-CC--HHHHHHHHHHHHHcCCCcCHHHHHHH
Q 005178 413 --VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG-GN--VDNAIELFEEMSELGVAINVMGCTCL 474 (710)
Q Consensus 413 --~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~--~~~A~~~~~~m~~~~~~p~~~~~~~l 474 (710)
.+.++.+|+.+.+.|..+-|..-+.+-+-++... .. +..+..+++.+.+.|+++....|..+
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 2445556666665554333332222222222211 11 33555566666666666555555444
No 263
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.67 E-value=19 Score=39.83 Aligned_cols=180 Identities=17% Similarity=0.134 Sum_probs=102.6
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHH----H-HHHcCCHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHHc
Q 005178 203 FQLIEQLANEMVSNEIELDNITYSTIIT----C-AKRCNLFDEAIEWFERMYK-------TGLMPDEVTYSAILDVYAKS 270 (710)
Q Consensus 203 ~~~A~~l~~~m~~~g~~p~~~~~~~li~----~-~~~~g~~~~A~~~~~~m~~-------~g~~~~~~~~~~li~~~~~~ 270 (710)
...|.+.++.....| +...-..+.. + +....+.+.|+.+|+.+.+ .| +......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 467888888887775 2222222222 2 4456788999999988876 33 333556666666664
Q ss_pred C-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----Hc
Q 005178 271 G-----KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE-SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMG----KA 340 (710)
Q Consensus 271 g-----~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~----~~ 340 (710)
. +.+.|+.+|....+.| .|+....-..+..... ..+...|.++|...-+.|.. ..+-.+..+|. -.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcC
Confidence 3 5677888888887776 3444433333332222 24567888888888877732 22222222221 23
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 005178 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWP 394 (710)
Q Consensus 341 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 394 (710)
.+...|..++.+.-+.| .|...--...+..+.. +..+.+.-.+..+.+.|.+
T Consensus 378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE 429 (552)
T ss_pred CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh
Confidence 46777777887777776 2222222222333333 6666666666666655443
No 264
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.62 E-value=16 Score=38.62 Aligned_cols=60 Identities=15% Similarity=0.117 Sum_probs=36.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005178 331 NTLLEAMGKAGKPGLARSLFDEMVESG-LTPDEKTLTALIKIYGKARWAKDALELWERMRE 390 (710)
Q Consensus 331 ~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 390 (710)
..+..++-+.|+.++|++.|++|.+.. ...+......|+.++...+.+.++..++.+..+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 345555666677777777777776432 111233455566777777777777777666543
No 265
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.45 E-value=21 Score=41.63 Aligned_cols=159 Identities=18% Similarity=0.183 Sum_probs=91.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005178 236 NLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVL 315 (710)
Q Consensus 236 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 315 (710)
++++.|+.-+..+. ...|.-.++.--+.|.+.+|+.+|..=.+ .-...|.+....+...+.+++|.-.|
T Consensus 894 ~ry~~AL~hLs~~~-------~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e----~~k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG-------ETYFPECKNYIKKHGLYDEALALYKPDSE----KQKVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHHHHHHcC-------ccccHHHHHHHHhcccchhhhheeccCHH----HHHHHHHHHHHHHHHhccccHHHHHH
Confidence 45666665554442 22344455555567777777776532111 11233444445555667777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 005178 316 QEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK--TLTALIKIYGKARWAKDALELWERMRENKW 393 (710)
Q Consensus 316 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 393 (710)
+..-+. .--+.+|..+|+|.+|..+-.++... .+.. +-..|+.-+...++.-+|-++..+....
T Consensus 963 e~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd-- 1028 (1265)
T KOG1920|consen 963 ERCGKL---------EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD-- 1028 (1265)
T ss_pred HHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--
Confidence 665431 12456777788888888877776531 1222 2245666677777777777777666543
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005178 394 PMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425 (710)
Q Consensus 394 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 425 (710)
..-.+..|++...+++|..+.....+
T Consensus 1029 ------~~~av~ll~ka~~~~eAlrva~~~~~ 1054 (1265)
T KOG1920|consen 1029 ------PEEAVALLCKAKEWEEALRVASKAKR 1054 (1265)
T ss_pred ------HHHHHHHHhhHhHHHHHHHHHHhccc
Confidence 22344456666677777776665553
No 266
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.39 E-value=7.7 Score=38.80 Aligned_cols=129 Identities=16% Similarity=0.259 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--c----CCHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHHcCC-
Q 005178 203 FQLIEQLANEMVSNEIELDNITYSTIITCAKR--C----NLFDEAIEWFERMYKTGL---MPDEVTYSAILDVYAKSGK- 272 (710)
Q Consensus 203 ~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~--~----g~~~~A~~~~~~m~~~g~---~~~~~~~~~li~~~~~~g~- 272 (710)
+++...+++.|.+.|+.-+..+|-+....... . ....+|.++|+.|++.-. .++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45566777888888887777666553333322 1 234577788888877632 2334445555433 2222
Q ss_pred ---HHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005178 273 ---VEEVLSLYERGVASGWKPDPI--AFSVLGKMFGESGD--YDGIRYVLQEMKSLGVQPNLVVYNTL 333 (710)
Q Consensus 273 ---~~~A~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~l 333 (710)
.+.++.+|+.+.+.|+..+.. ....++........ ...+..+++.+.+.|++.....|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 345566666666666544322 22222222211111 33566666666666666665555544
No 267
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.38 E-value=4.8 Score=34.90 Aligned_cols=81 Identities=14% Similarity=0.114 Sum_probs=53.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc
Q 005178 403 LLNMCADIGLVEEAERLFEDMKLSDYC-KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481 (710)
Q Consensus 403 li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 481 (710)
-.....+.|++++|.+.|+.+...-.. +-....-..++.+|.+.|++++|...+++.++.....--.-|...+.+++.-
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 344455778888888888888775321 2234566677888888888888888888888765544445565556665544
Q ss_pred CC
Q 005178 482 RR 483 (710)
Q Consensus 482 g~ 483 (710)
..
T Consensus 96 ~~ 97 (142)
T PF13512_consen 96 EQ 97 (142)
T ss_pred HH
Confidence 33
No 268
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.33 E-value=0.35 Score=29.98 Aligned_cols=32 Identities=9% Similarity=-0.098 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcH
Q 005178 505 LCGCLLSVVSLCETSEDVGKVITCLQQANPKL 536 (710)
Q Consensus 505 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 536 (710)
.|..+..+|...|++++|++.|+++.+++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45566777777788888888888777777753
No 269
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=92.23 E-value=23 Score=39.80 Aligned_cols=429 Identities=12% Similarity=0.051 Sum_probs=209.8
Q ss_pred HHHHHHHHHHHHhCCCCCCc--HHHHHHHHHHHH-ccCChHHHHHHHHHHHHCCCCCCHH-----HHHHHHHHHHHcCCH
Q 005178 167 WQKSYFFFNWIKSQNLFPME--TIFYNVTMKSLR-FGRQFQLIEQLANEMVSNEIELDNI-----TYSTIITCAKRCNLF 238 (710)
Q Consensus 167 ~~~A~~~~~~~~~~~~~~~~--~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~g~~p~~~-----~~~~li~~~~~~g~~ 238 (710)
...|+..++.+.+...++|. ..++--+...|. ...+++.|+..+++.....-.++.. .-..++..+.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 34566666666654444443 345555666664 7788888888888775432222221 122344566665555
Q ss_pred HHHHHHHHHHHHcC----CCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHH--hcCCH
Q 005178 239 DEAIEWFERMYKTG----LMPDEVTYSAI-LDVYAKSGKVEEVLSLYERGVASG---WKPDPIAFSVLGKMFG--ESGDY 308 (710)
Q Consensus 239 ~~A~~~~~~m~~~g----~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~g---~~~~~~~~~~li~~~~--~~g~~ 308 (710)
. |...+++.++.- ..+-...|..+ +..+...+++..|.+.++.+...- ..+-..++-.++.+.. +.+..
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 5 888887766541 11122233333 333333478888888888776432 1333444444444433 44556
Q ss_pred HHHHHHHHHHHHCC---------CCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHH---CC-CC--------------
Q 005178 309 DGIRYVLQEMKSLG---------VQPNLVVYNTLLEAMG--KAGKPGLARSLFDEMVE---SG-LT-------------- 359 (710)
Q Consensus 309 ~~A~~~~~~m~~~g---------~~p~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~---~g-~~-------------- 359 (710)
+++.+.++++.... ..|-..+|..+++.++ ..|+++.+...++++.+ .. -.
T Consensus 196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l 275 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPL 275 (608)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEe
Confidence 66777776663321 1234556777766554 46676666666555532 10 00
Q ss_pred ------------CCHHHH---------HHHHHH--HHhcCCHHHHHHHHHH-------HH-hCCCCCC--------HHHH
Q 005178 360 ------------PDEKTL---------TALIKI--YGKARWAKDALELWER-------MR-ENKWPMD--------FILY 400 (710)
Q Consensus 360 ------------p~~~~~---------~~li~~--~~~~g~~~~A~~~~~~-------m~-~~~~~~~--------~~~~ 400 (710)
+....| .-++.+ ++..+..+.|.+++++ .. .....+. ...|
T Consensus 276 ~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~ 355 (608)
T PF10345_consen 276 NIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQW 355 (608)
T ss_pred ecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHH
Confidence 101111 111221 2333444355554444 33 1111111 1122
Q ss_pred HHHHHH---------HHHcCCHHHHHHHHHHHHhCCCCCCC-------HHHHHHHHHHHHhCCCHHHHHHHHH-------
Q 005178 401 NTLLNM---------CADIGLVEEAERLFEDMKLSDYCKPD-------NYSYTAMLNIYGSGGNVDNAIELFE------- 457 (710)
Q Consensus 401 ~~li~~---------~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~------- 457 (710)
...+.. .+-.+++..|...+..+.....-.|+ ...+....-.+...|+.+.|...|.
T Consensus 356 ~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~ 435 (608)
T PF10345_consen 356 LRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLC 435 (608)
T ss_pred HHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhh
Confidence 222222 23468899999999988764311122 2223333333556799999999997
Q ss_pred -HHHHcCCCcCHHHHHHH--HHHHHhcCC--HHH--HHHHHHHHHHC-CCCC--CHHHHHHHH-HHHHhcC--ChHHHHH
Q 005178 458 -EMSELGVAINVMGCTCL--IQCLGKARR--IDD--LVRVFGVSIDR-GVKP--DDRLCGCLL-SVVSLCE--TSEDVGK 524 (710)
Q Consensus 458 -~m~~~~~~p~~~~~~~l--i~~~~~~g~--~~~--A~~~~~~m~~~-~~~p--~~~~~~~ll-~~~~~~g--~~~~a~~ 524 (710)
.....+...+...+..+ +..+...+. .++ +..+++.+... .-.| +..++.+++ .++.... ...++..
T Consensus 436 ~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~ 515 (608)
T PF10345_consen 436 EAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKR 515 (608)
T ss_pred hhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHH
Confidence 44445555555544432 222222222 223 66777665421 2222 333455444 3333221 2235555
Q ss_pred HHHHHHH-----hCCc-HHH-HHHHHHhhcCCcccHHHHHHHHHHh---ccCCC--ChhhHHH-----HHHHHHhCCCHH
Q 005178 525 VITCLQQ-----ANPK-LVA-FLNLIEDNSTGFENIKEEFRNVIKD---TEVDA--RRPFCNC-----LIDICRNRNLNE 587 (710)
Q Consensus 525 ~~~~~~~-----~~p~-~~~-~~~~L~~~~~~~~~~~~~a~~~~~~---~~~~~--~~~~~~~-----l~~~~~~~g~~~ 587 (710)
.+....+ .+-. ... ++++++.... .++..+.+...... ....+ ....|.. +.+.+...|+.+
T Consensus 516 ~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ 594 (608)
T PF10345_consen 516 HLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRD 594 (608)
T ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHH
Confidence 4444322 1111 122 3466665443 23233332222222 12223 3346733 344588899999
Q ss_pred HHHHHHHHHH
Q 005178 588 RAHELLYLGT 597 (710)
Q Consensus 588 ~A~~~~~~~~ 597 (710)
+|..+..+..
T Consensus 595 ka~~~~~~~~ 604 (608)
T PF10345_consen 595 KAEEARQQLD 604 (608)
T ss_pred HHHHHHHHHH
Confidence 9998877643
No 270
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.18 E-value=11 Score=35.77 Aligned_cols=27 Identities=11% Similarity=0.206 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHH
Q 005178 188 IFYNVTMKSLRFGRQFQLIEQLANEMV 214 (710)
Q Consensus 188 ~~~~~li~~~~~~g~~~~A~~l~~~m~ 214 (710)
..|.--..+|....++++|...+.+..
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 345555556666666666666655554
No 271
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.15 E-value=11 Score=36.03 Aligned_cols=56 Identities=21% Similarity=0.250 Sum_probs=29.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005178 368 LIKIYGKARWAKDALELWERMRENKWPMDF---ILYNTLLNMCADIGLVEEAERLFEDMK 424 (710)
Q Consensus 368 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~ 424 (710)
+...|.+.|.+..|..-++.|.+. .+-+. ..+-.+..+|...|..++|.+.-.-+.
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 445566666666666666666654 22122 233344555666666666655544443
No 272
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.01 E-value=11 Score=35.64 Aligned_cols=204 Identities=13% Similarity=0.108 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005178 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303 (710)
Q Consensus 224 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 303 (710)
.|.-...+|....++++|...+.+..+. .+-+...|.+ ...++.|.-+.+++.+. +--...|+--..+|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 3444455777788888888877666532 1112222211 22344555555555442 122334555666788
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCC---HHHHHHHHHHHHhcCC
Q 005178 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES---GLTPD---EKTLTALIKIYGKARW 377 (710)
Q Consensus 304 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~---~~~~~~li~~~~~~g~ 377 (710)
.+|..+.|-..+++.-+. .+.-++++|+++|++.... + ..+ ...+..+-..+.+...
T Consensus 103 E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~-dr~~ma~el~gk~sr~lVrl~k 165 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEED-DRDQMAFELYGKCSRVLVRLEK 165 (308)
T ss_pred HhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHhhhHhhhhHH
Confidence 888887777776665431 2334455555555544321 1 001 1123333444555566
Q ss_pred HHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHHhCCCHH
Q 005178 378 AKDALELWERMREN----KWPMDF-ILYNTLLNMCADIGLVEEAERLFEDMKLSDYC--KPDNYSYTAMLNIYGSGGNVD 450 (710)
Q Consensus 378 ~~~A~~~~~~m~~~----~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~ 450 (710)
+++|-..|.+-... .--++. ..|-..|-.|....++..|+..++.-.+.+.+ .-+..+...|+.+| ..|+.+
T Consensus 166 f~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E 244 (308)
T KOG1585|consen 166 FTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIE 244 (308)
T ss_pred hhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHH
Confidence 66655544432210 000111 22334444455556777777777664332210 23445556666655 345555
Q ss_pred HHHHH
Q 005178 451 NAIEL 455 (710)
Q Consensus 451 ~A~~~ 455 (710)
++.++
T Consensus 245 ~~~kv 249 (308)
T KOG1585|consen 245 EIKKV 249 (308)
T ss_pred HHHHH
Confidence 54444
No 273
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.00 E-value=2.3 Score=40.96 Aligned_cols=61 Identities=16% Similarity=0.066 Sum_probs=25.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 005178 401 NTLLNMCADIGLVEEAERLFEDMKLSDY-CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461 (710)
Q Consensus 401 ~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (710)
..|..++...|++++|..+|..+.+... .+.-+.++--|..+..+.|+.++|..+|++..+
T Consensus 182 yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 182 YWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3344444444444444444444443221 011123344444444444444444444444443
No 274
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.93 E-value=14 Score=36.68 Aligned_cols=162 Identities=17% Similarity=0.217 Sum_probs=95.2
Q ss_pred HccCChHHHHHHHHHHHHCC--CCCCH------HHHHHHHHHHHHcC-CHHHHHHHHHHHHHc--------CCCCC----
Q 005178 198 RFGRQFQLIEQLANEMVSNE--IELDN------ITYSTIITCAKRCN-LFDEAIEWFERMYKT--------GLMPD---- 256 (710)
Q Consensus 198 ~~~g~~~~A~~l~~~m~~~g--~~p~~------~~~~~li~~~~~~g-~~~~A~~~~~~m~~~--------g~~~~---- 256 (710)
.+.|+++.|..++.+....- ..|+. ..|+.-...+ ..+ +++.|..++++..+. ...++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~-~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLL-SKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHH-HcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 46778888888887776532 12222 2233333333 445 888888777766543 12233
Q ss_pred -HHHHHHHHHHHHHcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 005178 257 -EVTYSAILDVYAKSGKV---EEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNT 332 (710)
Q Consensus 257 -~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 332 (710)
..++..++.+|...+.. ++|..+++.+.... +-.+.++-.-+..+.+.++.+++.+++.+|...- .-....+..
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~ 160 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDS 160 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHH
Confidence 24667788888887764 45666666665442 2235566666777777999999999999998852 112334555
Q ss_pred HHHHHHH--cCCHHHHHHHHHHHHHCCCCCCH
Q 005178 333 LLEAMGK--AGKPGLARSLFDEMVESGLTPDE 362 (710)
Q Consensus 333 li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~ 362 (710)
++..+.. ......|...++.++...+.|..
T Consensus 161 ~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 161 ILHHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 5544422 22334566666666554444443
No 275
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.93 E-value=1.9 Score=42.25 Aligned_cols=76 Identities=16% Similarity=0.189 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----cCCCcCHHHHHH
Q 005178 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE-----LGVAINVMGCTC 473 (710)
Q Consensus 399 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~~ 473 (710)
++..++..+...|+++.+...++++.... +.+...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d--p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD--PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 45566667777777777777777777765 56777777777777777777777777777654 355555554444
Q ss_pred HHH
Q 005178 474 LIQ 476 (710)
Q Consensus 474 li~ 476 (710)
...
T Consensus 233 y~~ 235 (280)
T COG3629 233 YEE 235 (280)
T ss_pred HHH
Confidence 433
No 276
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=91.88 E-value=5.5 Score=34.50 Aligned_cols=54 Identities=15% Similarity=0.061 Sum_probs=27.4
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCC--cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005178 443 YGSGGNVDNAIELFEEMSELGVA--INVMGCTCLIQCLGKARRIDDLVRVFGVSID 496 (710)
Q Consensus 443 ~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 496 (710)
..+.|++++|.+.|+.+...-.. -....-..++.+|.+.|++++|+..+++.++
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34455555555555555543111 1233444455555555666665555555554
No 277
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.61 E-value=27 Score=39.22 Aligned_cols=145 Identities=14% Similarity=0.109 Sum_probs=89.1
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 005178 192 VTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG 271 (710)
Q Consensus 192 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 271 (710)
...+.+.+.|++++|..-|-+-+.. +.|. .+|.-|....+...-..+++.+.+.|+. +...-..|+.+|.+.+
T Consensus 373 kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlk 445 (933)
T KOG2114|consen 373 KYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLK 445 (933)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhc
Confidence 3344556788888888777665532 2222 3445555566666777777888887766 6666677888888888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005178 272 KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351 (710)
Q Consensus 272 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 351 (710)
+.++-.++.+... .|.- ..-....+..+.+.+-+++|..+-..... +......+ +-..+++++|++++.
T Consensus 446 d~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~ 514 (933)
T KOG2114|consen 446 DVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYIS 514 (933)
T ss_pred chHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHh
Confidence 8887776665544 2211 11234556666677777777666555432 23333333 335677888888887
Q ss_pred HHH
Q 005178 352 EMV 354 (710)
Q Consensus 352 ~m~ 354 (710)
.|.
T Consensus 515 slp 517 (933)
T KOG2114|consen 515 SLP 517 (933)
T ss_pred cCC
Confidence 663
No 278
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=91.49 E-value=14 Score=35.53 Aligned_cols=62 Identities=10% Similarity=0.047 Sum_probs=40.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcH
Q 005178 474 LIQCLGKARRIDDLVRVFGVSIDRGVKPDD---RLCGCLLSVVSLCETSEDVGKVITCLQQANPKL 536 (710)
Q Consensus 474 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 536 (710)
+.+-|.+.|.+-.|..-+++|++. ..-+. ..+-.+..+|...|..++|.+.-+-+..-.|+.
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 456688888888888888888865 22122 244556677888888777776655444444544
No 279
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.46 E-value=0.43 Score=30.26 Aligned_cols=26 Identities=27% Similarity=0.102 Sum_probs=22.5
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005178 572 FCNCLIDICRNRNLNERAHELLYLGT 597 (710)
Q Consensus 572 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 597 (710)
.|+.|+.+|.+.|++++|++++++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47889999999999999999999864
No 280
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.42 E-value=2.4 Score=41.52 Aligned_cols=79 Identities=18% Similarity=0.184 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 005178 433 NYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID-----RGVKPDDRLCG 507 (710)
Q Consensus 433 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~ 507 (710)
..++..++..+...|+++.+...++++...... +...|..++.+|.+.|+...|+..|+.+.. .|+.|-..+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 456677888899999999999999999886543 788999999999999999999999988764 58888766655
Q ss_pred HHHHH
Q 005178 508 CLLSV 512 (710)
Q Consensus 508 ~ll~~ 512 (710)
....+
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 44433
No 281
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.16 E-value=6.7 Score=35.81 Aligned_cols=101 Identities=13% Similarity=0.052 Sum_probs=72.8
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCc----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhc
Q 005178 442 IYGSGGNVDNAIELFEEMSELGVAI----NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR-LCGCLLSVVSLC 516 (710)
Q Consensus 442 ~~~~~g~~~~A~~~~~~m~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~ 516 (710)
-+...|++++|..-|.++++.-... ..+.|..-..++.+.+.++.|+.-..+.++.+ |+.. ....-..+|.+.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYEKM 181 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHHhh
Confidence 4677889999999888888742211 23456666778889999999999998888754 4322 222334578888
Q ss_pred CChHHHHHHHHHHHHhCCcHHHHHHHHH
Q 005178 517 ETSEDVGKVITCLQQANPKLVAFLNLIE 544 (710)
Q Consensus 517 g~~~~a~~~~~~~~~~~p~~~~~~~~L~ 544 (710)
..+++|+.-|+++.+.+|....+-..+.
T Consensus 182 ek~eealeDyKki~E~dPs~~ear~~i~ 209 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESDPSRREAREAIA 209 (271)
T ss_pred hhHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 9999999999999999997665544333
No 282
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=91.13 E-value=0.88 Score=30.38 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=9.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Q 005178 403 LLNMCADIGLVEEAERLFEDMKL 425 (710)
Q Consensus 403 li~~~~~~g~~~~A~~~~~~~~~ 425 (710)
+...|...|++++|+++|+++.+
T Consensus 7 la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 7 LARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 33344444444444444444443
No 283
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.06 E-value=11 Score=33.50 Aligned_cols=69 Identities=10% Similarity=-0.036 Sum_probs=37.1
Q ss_pred HccCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 005178 198 RFGRQFQLIEQLANEMVSNEIELDNITYSTIIT-CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270 (710)
Q Consensus 198 ~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 270 (710)
.+.++.++++.+++.+.-. .|.......+-. .+...|++.+|+.+|+.+...+ |......+|+..|...
T Consensus 21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYA 90 (160)
T ss_pred HccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHH
Confidence 4556677777777666553 344333322222 4556677777777777765542 3344444555444443
No 284
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=90.85 E-value=24 Score=37.24 Aligned_cols=166 Identities=16% Similarity=0.059 Sum_probs=86.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 005178 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIY 443 (710)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~ 443 (710)
...+++..++.+-...-...+..+|.+.|- +...|..+++.|... ..++-..+++++.+-. -.|++.-..|..-|
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~ReLa~~y 142 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGRELADKY 142 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHHHHHHHH
Confidence 344455555555555555566666655432 445556666666655 3355555666555544 23444444455544
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCc-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcC
Q 005178 444 GSGGNVDNAIELFEEMSELGVAI-----NVMGCTCLIQCLGKARRIDDLVRVFGVSI-DRGVKPDDRLCGCLLSVVSLCE 517 (710)
Q Consensus 444 ~~~g~~~~A~~~~~~m~~~~~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~~p~~~~~~~ll~~~~~~g 517 (710)
-+ ++...+..+|.++...=++. -...|..++..- ..+.|.-+.+..++. ..|..--.+.+..+-.-|....
T Consensus 143 Ek-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~e 219 (711)
T COG1747 143 EK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENE 219 (711)
T ss_pred HH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcccc
Confidence 44 55566666666555431110 112344443211 234455555555554 3343333445555556666677
Q ss_pred ChHHHHHHHHHHHHhCCcHH
Q 005178 518 TSEDVGKVITCLQQANPKLV 537 (710)
Q Consensus 518 ~~~~a~~~~~~~~~~~p~~~ 537 (710)
++.+|+++++.+.+.+-.+.
T Consensus 220 N~~eai~Ilk~il~~d~k~~ 239 (711)
T COG1747 220 NWTEAIRILKHILEHDEKDV 239 (711)
T ss_pred CHHHHHHHHHHHhhhcchhh
Confidence 77777777776666555444
No 285
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=90.71 E-value=1.1 Score=35.12 Aligned_cols=70 Identities=24% Similarity=0.339 Sum_probs=42.8
Q ss_pred cccccChHHHHHHHHHHHHHHHHHHHhccCCCCeeEEEeccCcccchhhHHHHHHHHhhhcCCCccc---------cCCC
Q 005178 616 DVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQLFLAETGTGTHKFSQGLATAFASHVNKLAAPFRQ---------SEGK 686 (710)
Q Consensus 616 ~~~~~~~G~~~~Al~~~~~~~~~~~~~~~~~p~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~---------~~~~ 686 (710)
+++++....|..++..+++. ....+. ....|.||.|.|+-.-.++.++...|++ ...+.+ ...|
T Consensus 2 DLHG~~~~eA~~~l~~~l~~---~~~~~~---~~~~II~G~G~hS~~g~Lk~~V~~~L~~-~~~~~~v~~~~~~~~~~g~ 74 (83)
T PF01713_consen 2 DLHGLTVEEALRALEEFLDE---ARQRGI---RELRIITGKGNHSKGGVLKRAVRRWLEE-GYQYEEVLAYRDAEPEDGN 74 (83)
T ss_dssp E-TTS-HHHHHHHHHHHHHH---HHHTTH---SEEEEE--STCTCCTSHHHHHHHHHHHH-THCCTTEEEEEE--CCCTG
T ss_pred CCCCCcHHHHHHHHHHHHHH---HHHcCC---CEEEEEeccCCCCCCCcHHHHHHHHHHh-hhccchhheeeecCCCCCC
Confidence 45666665555555555543 333332 5688999999999875589999999987 544443 2346
Q ss_pred CceEEe
Q 005178 687 AGCFVA 692 (710)
Q Consensus 687 ~g~~~~ 692 (710)
.|+++.
T Consensus 75 ~G~~~V 80 (83)
T PF01713_consen 75 SGATIV 80 (83)
T ss_dssp GGEEEE
T ss_pred CeEEEE
Confidence 687764
No 286
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.41 E-value=25 Score=39.46 Aligned_cols=176 Identities=15% Similarity=0.111 Sum_probs=119.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH----HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005178 330 YNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL----IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405 (710)
Q Consensus 330 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l----i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 405 (710)
...-++.+++...++.|+.+-+.- +. +..+...+ ...+.+.|++++|...|-+.+.. +.|. .+|.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~---~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~ 405 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQ---HL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIK 405 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhc---CC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHH
Confidence 345677888888888887765433 22 33333334 34456789999999988887754 3332 2556
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHH
Q 005178 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485 (710)
Q Consensus 406 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 485 (710)
-|....++.+-..+++.+.+.|. .+..--..|+.+|.+.++.++-.++.+.-. .|.. ..-....+..+.+.+-.+
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gl--a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~ 480 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGL--ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLD 480 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHccc--ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHH
Confidence 66777788888889999999884 666677789999999999998888776554 2222 112345667778888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 005178 486 DLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCL 529 (710)
Q Consensus 486 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 529 (710)
+|..+-.+... ....... .+...+++++|.++++.+
T Consensus 481 ~a~~LA~k~~~-----he~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 481 EAELLATKFKK-----HEWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHHhcc-----CHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 88877765432 2233333 345678899999888765
No 287
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=90.16 E-value=16 Score=34.01 Aligned_cols=90 Identities=11% Similarity=0.034 Sum_probs=58.7
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 005178 160 ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFD 239 (710)
Q Consensus 160 ~l~~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 239 (710)
++.+++-+..|+.=|....... |.-+.+||.+.-.+...|+++.|.+.|+...+....-+-...|--|. +--.|++.
T Consensus 74 lYDSlGL~~LAR~DftQaLai~--P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~ 150 (297)
T COG4785 74 LYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYK 150 (297)
T ss_pred hhhhhhHHHHHhhhhhhhhhcC--CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchH
Confidence 3555565677776666665543 33356788888888999999999999999888643222223333333 22358888
Q ss_pred HHHHHHHHHHHcC
Q 005178 240 EAIEWFERMYKTG 252 (710)
Q Consensus 240 ~A~~~~~~m~~~g 252 (710)
-|.+-|-+.-+..
T Consensus 151 LAq~d~~~fYQ~D 163 (297)
T COG4785 151 LAQDDLLAFYQDD 163 (297)
T ss_pred hhHHHHHHHHhcC
Confidence 8887777666653
No 288
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.72 E-value=38 Score=37.79 Aligned_cols=46 Identities=11% Similarity=0.140 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 005178 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNL 237 (710)
Q Consensus 188 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~ 237 (710)
.++...|..|...|++++|-.+.-.|... +..-|...+.-+...++
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccc
Confidence 34555555555555555555555555543 44444444444444443
No 289
>PRK09687 putative lyase; Provisional
Probab=89.26 E-value=25 Score=34.98 Aligned_cols=218 Identities=11% Similarity=0.051 Sum_probs=95.5
Q ss_pred CcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHcCCCCCHHHH
Q 005178 185 METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLF----DEAIEWFERMYKTGLMPDEVTY 260 (710)
Q Consensus 185 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~~~~~~~ 260 (710)
+|..+....+..+...|.. ++...+..+... +|...-...+.++.+.|+. .++...+..+... .++..+-
T Consensus 35 ~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQ-DVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCcc-hHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 4444555555555555542 222333333332 2444444445555555542 3455555554332 3444444
Q ss_pred HHHHHHHHHcCCH-----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005178 261 SAILDVYAKSGKV-----EEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLE 335 (710)
Q Consensus 261 ~~li~~~~~~g~~-----~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 335 (710)
...+.++...+.- ..+...+..... .++..+-...+.++++.++ +++...+-.+.+. +|..+-...+.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~ 181 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAF 181 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHH
Confidence 4444444443311 122222222222 2344444455555555554 3444444444442 34444444444
Q ss_pred HHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 005178 336 AMGKAG-KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414 (710)
Q Consensus 336 ~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 414 (710)
++++.+ ....+...+..+.. .++..+-...+.++++.++ ..|+..+-...+.+ + .....+.++...|..
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~- 251 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK- 251 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-
Confidence 444432 12344444444442 3344445555555555555 23444444443331 1 123445555555553
Q ss_pred HHHHHHHHHHh
Q 005178 415 EAERLFEDMKL 425 (710)
Q Consensus 415 ~A~~~~~~~~~ 425 (710)
+|...+..+.+
T Consensus 252 ~a~p~L~~l~~ 262 (280)
T PRK09687 252 TLLPVLDTLLY 262 (280)
T ss_pred hHHHHHHHHHh
Confidence 45555555543
No 290
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.23 E-value=16 Score=32.71 Aligned_cols=123 Identities=19% Similarity=0.197 Sum_probs=59.0
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH-HHHH--HHHHHHhcCCHH
Q 005178 234 RCNLFDEAIEWFERMYKTGLMPD-EVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI-AFSV--LGKMFGESGDYD 309 (710)
Q Consensus 234 ~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~-~~~~--li~~~~~~g~~~ 309 (710)
+.+..++|+.-|..+.+.|..-- +.....+.......|+...|...|+++-...-.|-.. -..- -.-.+...|.|+
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 34555555555555555543211 1111222333445566666666666554432222211 0011 112344566666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 005178 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356 (710)
Q Consensus 310 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 356 (710)
+....++-+-..+-+.-...-..|.-+-.+.|++..|.+.|..+...
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 66666665554443333344455555566666666666666666543
No 291
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.98 E-value=43 Score=37.40 Aligned_cols=52 Identities=19% Similarity=0.095 Sum_probs=25.6
Q ss_pred HHccCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005178 197 LRFGRQFQLIEQLANEMVSNEIEL---DNITYSTIITCAKRCNLFDEAIEWFERMYK 250 (710)
Q Consensus 197 ~~~~g~~~~A~~l~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 250 (710)
+.+.+.+++|+++.+..... .+ -...+...|..+.-.|++++|-...-.|..
T Consensus 366 ll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g 420 (846)
T KOG2066|consen 366 LLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG 420 (846)
T ss_pred HHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc
Confidence 34445555555554443322 22 123445555555556666666555555543
No 292
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=88.76 E-value=7.9 Score=36.49 Aligned_cols=116 Identities=12% Similarity=0.039 Sum_probs=63.3
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCccc----
Q 005178 478 LGKARRIDDLVRVFGVSIDRGVKPDDRL-CGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFEN---- 552 (710)
Q Consensus 478 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~---- 552 (710)
|....+++.|+..|.+.+. +.|+..+ |..=+.++.+..+++.+..--+.+.++.|+..-....||.+.....+
T Consensus 20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHH
Confidence 4445556666665555444 4455432 33444555556666666666666666666665544444443322211
Q ss_pred --HHHHHHHHHHhccCCCChhhHHHHHHHHHhCCCHHHHHHHHHH
Q 005178 553 --IKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYL 595 (710)
Q Consensus 553 --~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 595 (710)
.+.+|..+.+..++.+...++..|.++=.+.=...++.++.++
T Consensus 98 I~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 98 IKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 2344555555556666666888888775554455566665544
No 293
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.73 E-value=0.9 Score=28.09 Aligned_cols=31 Identities=13% Similarity=-0.015 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCc
Q 005178 505 LCGCLLSVVSLCETSEDVGKVITCLQQANPK 535 (710)
Q Consensus 505 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 535 (710)
+|..+...|...|++++|.+.|++..+++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4556666777777777777777777766663
No 294
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.72 E-value=4.5 Score=37.01 Aligned_cols=61 Identities=15% Similarity=0.228 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHH
Q 005178 470 GCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR--LCGCLLSVVSLCETSEDVGKVITCLQ 530 (710)
Q Consensus 470 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~ 530 (710)
.+..+..-|.+.|+.++|++.|.++.+....+... .+-.++..+...+++..+...+.++.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 45555556666666666666666665554444333 34455555566666666655555543
No 295
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.62 E-value=1 Score=28.49 Aligned_cols=23 Identities=4% Similarity=0.040 Sum_probs=10.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 005178 471 CTCLIQCLGKARRIDDLVRVFGV 493 (710)
Q Consensus 471 ~~~li~~~~~~g~~~~A~~~~~~ 493 (710)
|..|...|.+.|++++|+.+|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444444445555555544444
No 296
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.58 E-value=6.1 Score=36.13 Aligned_cols=59 Identities=8% Similarity=0.095 Sum_probs=25.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005178 295 FSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL--VVYNTLLEAMGKAGKPGLARSLFDEM 353 (710)
Q Consensus 295 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m 353 (710)
+..+...|.+.|+++.|.+.|.++.+....+.. ..+-.+|......+++..+.....+.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 334444455555555555555554443222111 12334444444455555554444443
No 297
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=88.22 E-value=2.6 Score=43.53 Aligned_cols=119 Identities=12% Similarity=0.038 Sum_probs=72.8
Q ss_pred hcCCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 005178 374 KARWAKDAL-ELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNA 452 (710)
Q Consensus 374 ~~g~~~~A~-~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 452 (710)
..|++-.|- +++.-+......|+.+...+.| +...|+++.+...+......- .....+...++....+.|++++|
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~~--~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKII--GTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhhh--cCCchHHHHHHHhhhchhhHHHH
Confidence 456665554 4444555444445555444444 456788888877776655432 34556677777777778888888
Q ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005178 453 IELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDR 497 (710)
Q Consensus 453 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 497 (710)
..+-+.|....++ +......-...-...|-+|++.-.|+++...
T Consensus 377 ~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 377 LSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 8777777765554 4444443333445567777777777777653
No 298
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.07 E-value=19 Score=32.30 Aligned_cols=100 Identities=17% Similarity=0.228 Sum_probs=45.6
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 005178 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKW 393 (710)
Q Consensus 314 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 393 (710)
.+..+.+.|++|+...+..+++.+.+.|++..- ..++..++-+|.......+-.+.. ....+.++=-+|..+
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR-- 87 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR-- 87 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH--
Confidence 344444555666666666666666666655433 333344444443333322222211 112222222222221
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005178 394 PMDFILYNTLLNMCADIGLVEEAERLFEDM 423 (710)
Q Consensus 394 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 423 (710)
=...+..+++.+...|++-+|.++....
T Consensus 88 --L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 --LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred --hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 0012444555666666666666666554
No 299
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=87.97 E-value=43 Score=36.21 Aligned_cols=115 Identities=12% Similarity=0.088 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHHcCCHHHHHHHHH
Q 005178 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIIT-CAKRCNLFDEAIEWFE 246 (710)
Q Consensus 168 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~-~~~~~g~~~~A~~~~~ 246 (710)
+.+..+++.+... +|.-.--|......=.+.|..+.+.++|++-+.. ++.+...|...+. +....|+.+...+.|+
T Consensus 62 ~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe 138 (577)
T KOG1258|consen 62 DALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDLFE 138 (577)
T ss_pred HHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 3444555555443 2323334566666667788888888888887763 5556667766666 3445677777777888
Q ss_pred HHHHc-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005178 247 RMYKT-GLM-PDEVTYSAILDVYAKSGKVEEVLSLYERGVA 285 (710)
Q Consensus 247 ~m~~~-g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 285 (710)
..+.. |.. .....|...|..-..++++.....+|++.++
T Consensus 139 ~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 139 RAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred HHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 77765 432 2455677777777777888888888888876
No 300
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.88 E-value=19 Score=31.96 Aligned_cols=63 Identities=13% Similarity=0.083 Sum_probs=29.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhh
Q 005178 480 KARRIDDLVRVFGVSIDRGVKPDDR---LCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDN 546 (710)
Q Consensus 480 ~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 546 (710)
+.++.+++..++..+.- +.|... ++.. ..+...|+|.+|..+|+.+.+..|...-.-.+++.|
T Consensus 22 ~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~--~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C 87 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRV--LRPEFPELDLFDG--WLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC 87 (160)
T ss_pred ccCChHHHHHHHHHHHH--hCCCchHHHHHHH--HHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 44555555555555543 223222 2222 223455556666666665555555544444444444
No 301
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.64 E-value=13 Score=34.39 Aligned_cols=78 Identities=9% Similarity=-0.076 Sum_probs=57.8
Q ss_pred HccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHcCCHH
Q 005178 198 RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKT---GLMPDEVTYSAILDVYAKSGKVE 274 (710)
Q Consensus 198 ~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~~~~~~~~~li~~~~~~g~~~ 274 (710)
.+.|+ +.|.+.|-.+...+.--++.....|...|. ..+.++++.++.+..+. +-.+|...+.+|++.|.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 33344 678888888887765545555555555554 67889999998888764 33678899999999999999988
Q ss_pred HHH
Q 005178 275 EVL 277 (710)
Q Consensus 275 ~A~ 277 (710)
.|-
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 874
No 302
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=87.62 E-value=21 Score=32.12 Aligned_cols=28 Identities=11% Similarity=0.354 Sum_probs=13.9
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 005178 247 RMYKTGLMPDEVTYSAILDVYAKSGKVE 274 (710)
Q Consensus 247 ~m~~~g~~~~~~~~~~li~~~~~~g~~~ 274 (710)
.+.+.++.++...+..+++.+.+.|++.
T Consensus 19 Sl~~~~i~~~~~L~~lli~lLi~~~~~~ 46 (167)
T PF07035_consen 19 SLNQHNIPVQHELYELLIDLLIRNGQFS 46 (167)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHH
Confidence 3334445555555555555555555443
No 303
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.59 E-value=14 Score=32.16 Aligned_cols=95 Identities=8% Similarity=-0.029 Sum_probs=50.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHH
Q 005178 481 ARRIDDLVRVFGVSIDRGVKPDD---RLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEF 557 (710)
Q Consensus 481 ~g~~~~A~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a 557 (710)
.++.+++..+++.|.- +.|+. .++... .+...|+|++|.++|+.+.+-.+...-...+++.|+.-.+
T Consensus 23 ~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~------ 92 (153)
T TIGR02561 23 SADPYDAQAMLDALRV--LRPNLKELDMFDGW--LLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG------ 92 (153)
T ss_pred cCCHHHHHHHHHHHHH--hCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC------
Confidence 6666666666666654 23322 233332 2456677777777777666655554433344444433222
Q ss_pred HHHHHhccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005178 558 RNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGT 597 (710)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 597 (710)
.+.|..........|...+|+.+.+...
T Consensus 93 ------------Dp~Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 93 ------------DAEWHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred ------------ChHHHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 2246666666566666666666666543
No 304
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.20 E-value=22 Score=31.89 Aligned_cols=139 Identities=12% Similarity=0.058 Sum_probs=89.5
Q ss_pred cHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHH
Q 005178 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITY-STIITCAKRCNLFDEAIEWFERMYKTGLMPDEV-TYSAI 263 (710)
Q Consensus 186 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~l 263 (710)
....|..-++ +...+..++|+.-|..+.+.|..--.+.- --+.......|+...|+..|+++-.....|-.. -...|
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 3444555444 35667778888888888887654222211 112235567888888888888887764444333 11111
Q ss_pred --HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 005178 264 --LDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325 (710)
Q Consensus 264 --i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 325 (710)
.-.+...|.++......+-+-..|-+.-...-..|.-+-.+.|++.+|...|..+......|
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 22345678888888888877766544455566777777888899999999998887643333
No 305
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=87.10 E-value=0.61 Score=29.13 Aligned_cols=27 Identities=22% Similarity=0.217 Sum_probs=18.2
Q ss_pred ccCCCChh-hHHHHHHHHHhCCCHHHHH
Q 005178 564 TEVDARRP-FCNCLIDICRNRNLNERAH 590 (710)
Q Consensus 564 ~~~~~~~~-~~~~l~~~~~~~g~~~~A~ 590 (710)
+..+|+.+ .|+.|+.+|...|++++|+
T Consensus 6 ie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 6 IELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 33445433 6777777788888888775
No 306
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.91 E-value=15 Score=32.03 Aligned_cols=51 Identities=6% Similarity=-0.056 Sum_probs=29.2
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHc
Q 005178 199 FGRQFQLIEQLANEMVSNEIELDNITYSTIIT-CAKRCNLFDEAIEWFERMYKT 251 (710)
Q Consensus 199 ~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~ 251 (710)
..+++++++.+++.|.-. .|+..-...+-. .+...|++++|+.+|+.+.+.
T Consensus 22 ~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 366777777777776553 333322222211 345667777777777777665
No 307
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=86.19 E-value=1.8 Score=26.71 Aligned_cols=27 Identities=4% Similarity=0.053 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005178 470 GCTCLIQCLGKARRIDDLVRVFGVSID 496 (710)
Q Consensus 470 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 496 (710)
+|..+..+|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 445555555555555555555555554
No 308
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.99 E-value=12 Score=36.77 Aligned_cols=100 Identities=13% Similarity=0.212 Sum_probs=55.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 005178 217 EIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTG---LMP--DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291 (710)
Q Consensus 217 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~ 291 (710)
|......+...++.......+++.++..+-++.... ..+ ...+|..+ +. .-+.++++.++..-+..|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl---ll-ky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL---LL-KYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH---HH-ccChHHHHHHHhCcchhccccc
Confidence 334444455555555455566666666665554321 111 12222222 22 2355566666666666777777
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005178 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKS 320 (710)
Q Consensus 292 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 320 (710)
..+++.+|+.+.+.+++.+|.++.-.|..
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 77777777777777777776666665554
No 309
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=85.76 E-value=1 Score=28.07 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=11.4
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHH
Q 005178 430 KPDNYSYTAMLNIYGSGGNVDNA 452 (710)
Q Consensus 430 ~~~~~~~~~li~~~~~~g~~~~A 452 (710)
|.+...|+.+...|...|++++|
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhh
Confidence 34444555555555555555444
No 310
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=85.49 E-value=54 Score=34.81 Aligned_cols=178 Identities=15% Similarity=0.157 Sum_probs=95.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005178 256 DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLE 335 (710)
Q Consensus 256 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 335 (710)
|....-+++..+..+..+.-.+.+-.+|+..| -+-..|..++.+|... .-++-..+++++.+..+ |.+...--+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~ReLa 139 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIGRELA 139 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHHHHHH
Confidence 55556666677766666666677777776654 5566666777777666 44566666776666533 3333333333
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCC--C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHH
Q 005178 336 AMGKAGKPGLARSLFDEMVESGLTP--D---EKTLTALIKIYGKARWAKDALELWERMREN-KWPMDFILYNTLLNMCAD 409 (710)
Q Consensus 336 ~~~~~g~~~~A~~~~~~m~~~g~~p--~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~ 409 (710)
.+...++...+..+|.++...=++. + ...|.-+...- ..+.+..+.+...+.+. |...-.+.+.-+-.-|..
T Consensus 140 ~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 140 DKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 3333466666666776665432110 0 12333333211 23445555555544432 233333444444455666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 005178 410 IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNI 442 (710)
Q Consensus 410 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~ 442 (710)
..++++|++++..+.+.+ ..|..+--.++..
T Consensus 218 ~eN~~eai~Ilk~il~~d--~k~~~ar~~~i~~ 248 (711)
T COG1747 218 NENWTEAIRILKHILEHD--EKDVWARKEIIEN 248 (711)
T ss_pred ccCHHHHHHHHHHHhhhc--chhhhHHHHHHHH
Confidence 666666666666666655 3555555555443
No 311
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.49 E-value=9.1 Score=41.03 Aligned_cols=148 Identities=14% Similarity=0.094 Sum_probs=80.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005178 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384 (710)
Q Consensus 305 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 384 (710)
.|+++.|..++..+. ....+.++.-+-+.|..++|+++- +|...- .....+.|+++.|.++
T Consensus 599 rrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~r---Felal~lgrl~iA~~l 659 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS---------TDPDQR---FELALKLGRLDIAFDL 659 (794)
T ss_pred hccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC---------CChhhh---hhhhhhcCcHHHHHHH
Confidence 455555555443332 123344555555666666555432 222111 1223456777777766
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 005178 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464 (710)
Q Consensus 385 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 464 (710)
..+.. +..-|..|.++..+.|++..|.+.|..... |..|+-.|...|+-+....+-....+.|.
T Consensus 660 a~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d----------~~~LlLl~t~~g~~~~l~~la~~~~~~g~ 723 (794)
T KOG0276|consen 660 AVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD----------LGSLLLLYTSSGNAEGLAVLASLAKKQGK 723 (794)
T ss_pred HHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc----------hhhhhhhhhhcCChhHHHHHHHHHHhhcc
Confidence 55543 456677777777777777777777766553 34456666666666655555555554443
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005178 465 AINVMGCTCLIQCLGKARRIDDLVRVFGV 493 (710)
Q Consensus 465 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 493 (710)
. |.-..+|...|+++++++++.+
T Consensus 724 ~------N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 724 N------NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred c------chHHHHHHHcCCHHHHHHHHHh
Confidence 2 2223345667777777666643
No 312
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=85.25 E-value=3.8 Score=40.45 Aligned_cols=94 Identities=11% Similarity=0.023 Sum_probs=40.8
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 005178 443 YGSGGNVDNAIELFEEMSELGVAI-NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSED 521 (710)
Q Consensus 443 ~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 521 (710)
|.+.|.+++|+..|...+.. .| |.+++..-..+|.+..++..|..-....+..+-. -...|..-+.+-...|+..+
T Consensus 107 yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~-Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL-YVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH-HHHHHHHHHHHHHHHhhHHH
Confidence 45555555555555554442 22 4445544455555555554444443333321100 00122222222223444555
Q ss_pred HHHHHHHHHHhCCcHHHH
Q 005178 522 VGKVITCLQQANPKLVAF 539 (710)
Q Consensus 522 a~~~~~~~~~~~p~~~~~ 539 (710)
|.+-++.+..+.|+....
T Consensus 184 AKkD~E~vL~LEP~~~EL 201 (536)
T KOG4648|consen 184 AKKDCETVLALEPKNIEL 201 (536)
T ss_pred HHHhHHHHHhhCcccHHH
Confidence 555555555555654433
No 313
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=85.08 E-value=5.4 Score=35.92 Aligned_cols=75 Identities=16% Similarity=0.121 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcc----------cHHHHHHHHHHh-ccCCCChhhHHHHHHHHHhCCCHHH
Q 005178 520 EDVGKVITCLQQANPKLVAFLNLIEDNSTGFE----------NIKEEFRNVIKD-TEVDARRPFCNCLIDICRNRNLNER 588 (710)
Q Consensus 520 ~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~----------~~~~~a~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~ 588 (710)
++|+.-|+++..++|+...++-.||.++...+ ...+.|.+++++ ...+|+..+|+.-+..+. +
T Consensus 52 edAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~------k 125 (186)
T PF06552_consen 52 EDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAA------K 125 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH------T
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH------h
Confidence 45555566666777777666655554443221 234555555554 467888888887777664 2
Q ss_pred HHHHHHHHHHcC
Q 005178 589 AHELLYLGTLYG 600 (710)
Q Consensus 589 A~~~~~~~~~~~ 600 (710)
|-++..+..+.+
T Consensus 126 ap~lh~e~~~~~ 137 (186)
T PF06552_consen 126 APELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHHHHSS
T ss_pred hHHHHHHHHHHH
Confidence 444544444333
No 314
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=84.99 E-value=72 Score=35.87 Aligned_cols=348 Identities=15% Similarity=0.148 Sum_probs=143.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHhCCCCCCHH---HHH
Q 005178 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK-------VEEVLSLYERGVASGWKPDPI---AFS 296 (710)
Q Consensus 227 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~~~~~g~~~~~~---~~~ 296 (710)
.+|-.|.|+|++++|.++....... .......+...+..|....+ -+....-|++........|+. +|.
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~AvY~ 194 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKRAVYK 194 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHHHHHH
Confidence 5666788999999999988555433 34455667778888877532 345556666666543222433 233
Q ss_pred HHHHHHHhcCCHHHHH-HHHHHHHHCCCCCCHH--HHHHHHHHHHHcCC-----------HHHHHHHHHHHHHCCCCC--
Q 005178 297 VLGKMFGESGDYDGIR-YVLQEMKSLGVQPNLV--VYNTLLEAMGKAGK-----------PGLARSLFDEMVESGLTP-- 360 (710)
Q Consensus 297 ~li~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~-----------~~~A~~~~~~m~~~g~~p-- 360 (710)
.+ +++.-...-. .+ ..+.. .|--|. +.+... +++-.+.+.+.-+.-+.+
T Consensus 195 il----g~cD~~~~~~~~V---------~~tiED~LW~~L~--~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge~~F~~~~ 259 (613)
T PF04097_consen 195 IL----GRCDLSRRHLPEV---------ARTIEDWLWLQLS--LVREDERSSSSAYERYTLEDLQKLILKYGESHFNAGS 259 (613)
T ss_dssp HH----HT--CCC-S-TTC-----------SHHHHHHHHHH--H---TTSSSSSSS----HHHHHHHHHHH-GGGCTT--
T ss_pred HH----hcCCccccchHHH---------hCcHHHHHHHHHH--hhccCCCccccccccccHHHHHHHHHHhchhhcccch
Confidence 22 1111100000 00 01111 111111 111110 111111111221222222
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 005178 361 DEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440 (710)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li 440 (710)
+... ....+.-.|.++.|++.+-+. .+...|.+.+...+. ..|-+......-..+.......+...-+..||
T Consensus 260 ~p~~---Yf~~LlLtgqFE~AI~~L~~~--~~~~~dAVH~AIaL~---~~gLL~~~~~~~~~lls~~~~~~~~ln~arLI 331 (613)
T PF04097_consen 260 NPLL---YFQVLLLTGQFEAAIEFLYRN--EFNRVDAVHFAIALA---YYGLLRVSDSSSAPLLSVDPGDPPPLNFARLI 331 (613)
T ss_dssp -------HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHH---HTT------------------------HHHHH
T ss_pred hHHH---HHHHHHHHhhHHHHHHHHHhh--ccCcccHHHHHHHHH---HcCCCCCCCccccceeeecCCCCCCcCHHHHH
Confidence 2222 334455678999999888771 122334444444333 33333322222122222211012225677888
Q ss_pred HHHHh---CCCHHHHHHHHHHHHHcCCCcCHHHHHH-HHHHHHhcCCHHHHH-----------HHHHH---HHHCCCCC-
Q 005178 441 NIYGS---GGNVDNAIELFEEMSELGVAINVMGCTC-LIQCLGKARRIDDLV-----------RVFGV---SIDRGVKP- 501 (710)
Q Consensus 441 ~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~-li~~~~~~g~~~~A~-----------~~~~~---m~~~~~~p- 501 (710)
..|.+ ..+..+|.++|--+....-+.....+.. +-......++++.-+ .++++ ++ ++..
T Consensus 332 ~~Y~~~F~~td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li--~~~~~ 409 (613)
T PF04097_consen 332 GQYTRSFEITDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLI--KFDDD 409 (613)
T ss_dssp HHHHHTTTTT-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGG--T-SSS
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeecccccc--CCCCc
Confidence 88876 4677788888877665322111222222 222222233222111 11111 11 1221
Q ss_pred CHH---HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcC----------CcccHHHHHHHHHHhccCCC
Q 005178 502 DDR---LCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNST----------GFENIKEEFRNVIKDTEVDA 568 (710)
Q Consensus 502 ~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~----------~~~~~~~~a~~~~~~~~~~~ 568 (710)
+.. +......-+...|++++|+.+|.-+.+.+.-...+...|+.... ...+....|..+.+.....+
T Consensus 410 ~~~~~~i~~~~A~~~e~~g~~~dAi~Ly~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~ 489 (613)
T PF04097_consen 410 EDFLREIIEQAAREAEERGRFEDAILLYHLAEEYDKVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNP 489 (613)
T ss_dssp SHHHHHHHHHHHHHHHHCT-HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCc
Confidence 111 23334445667899999999887765332222222233322111 12345666666666543322
Q ss_pred C---------hhhHHHHHHH-----HHhCCCHHHHHHHHHHHHHcCCCC
Q 005178 569 R---------RPFCNCLIDI-----CRNRNLNERAHELLYLGTLYGLYP 603 (710)
Q Consensus 569 ~---------~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~~~~~~ 603 (710)
. ..++..|++. +...|++++|.+.+++ .++.|
T Consensus 490 ~~~~~~~~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~---L~liP 535 (613)
T PF04097_consen 490 HISSKVSRKNRETFQLLLDLAEFFDLYHAGQYEQALDIIEK---LDLIP 535 (613)
T ss_dssp HHHTTS-HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH---TT-S-
T ss_pred chHhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh---CCCCC
Confidence 1 1255555543 4688999999888875 55666
No 315
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=84.32 E-value=44 Score=32.84 Aligned_cols=134 Identities=18% Similarity=0.195 Sum_probs=73.5
Q ss_pred ChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHH-cC-CHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005178 202 QFQLIEQLANEMVS-NEIELDNITYSTIITCAKR-CN-LFDEAIEWFERMYKT-GLMPDEVTYSAILDVYAKSGKVEEVL 277 (710)
Q Consensus 202 ~~~~A~~l~~~m~~-~g~~p~~~~~~~li~~~~~-~g-~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~ 277 (710)
.+.+|+.+|+..-. ..+--|......+++.... .+ ....--++.+-+... |-.++..+...++..+++.+++.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34455555552111 1123355555555554443 11 222222333333322 34567777777777777777777777
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-----HHHCCCCCCHHHHHHHHH
Q 005178 278 SLYERGVAS-GWKPDPIAFSVLGKMFGESGDYDGIRYVLQE-----MKSLGVQPNLVVYNTLLE 335 (710)
Q Consensus 278 ~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-----m~~~g~~p~~~~~~~li~ 335 (710)
++++..... +..-|...|..+|+...+.|+..-..++.++ +.+.|+..+...-..|-.
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~ 286 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSE 286 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHH
Confidence 777776654 4456777777777777777777766666654 233445555444444433
No 316
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.39 E-value=41 Score=31.81 Aligned_cols=20 Identities=10% Similarity=0.283 Sum_probs=12.4
Q ss_pred CChHHHHHHHHHHHHhCCcH
Q 005178 517 ETSEDVGKVITCLQQANPKL 536 (710)
Q Consensus 517 g~~~~a~~~~~~~~~~~p~~ 536 (710)
.+.-.+...+++..+++|..
T Consensus 209 ~D~v~a~~ALeky~~~dP~F 228 (288)
T KOG1586|consen 209 ADEVNAQRALEKYQELDPAF 228 (288)
T ss_pred ccHHHHHHHHHHHHhcCCcc
Confidence 45555666666666667754
No 317
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=83.15 E-value=49 Score=32.44 Aligned_cols=59 Identities=20% Similarity=0.213 Sum_probs=37.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005178 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424 (710)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 424 (710)
++.....|..+|.+.+|.++.++....+ +.+...+..++..++..|+--.|.+-++.+.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3445566677777777777777766652 3355666677777777777666665555554
No 318
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=83.09 E-value=2.7 Score=25.80 Aligned_cols=28 Identities=14% Similarity=-0.140 Sum_probs=23.9
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 005178 572 FCNCLIDICRNRNLNERAHELLYLGTLY 599 (710)
Q Consensus 572 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 599 (710)
+|..++.+|...|++++|++.|++++..
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 6778999999999999999999998754
No 319
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=82.13 E-value=2.9 Score=27.10 Aligned_cols=26 Identities=31% Similarity=0.192 Sum_probs=22.8
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005178 572 FCNCLIDICRNRNLNERAHELLYLGT 597 (710)
Q Consensus 572 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 597 (710)
+++.|+.+|...|++++|.++++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 67899999999999999999999875
No 320
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.35 E-value=23 Score=38.10 Aligned_cols=163 Identities=13% Similarity=0.165 Sum_probs=102.4
Q ss_pred cHHHHHHHHHHH-----HccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 005178 186 ETIFYNVTMKSL-----RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTY 260 (710)
Q Consensus 186 ~~~~~~~li~~~-----~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 260 (710)
++..|..++..+ .-.|+++.|..++..+.+ ..-+.++..+.+.|..++|+++- +|..-
T Consensus 580 nVi~y~l~l~vleyqt~vmrrd~~~a~~vLp~I~k-------~~rt~va~Fle~~g~~e~AL~~s---------~D~d~- 642 (794)
T KOG0276|consen 580 NVISYKILLEVLEYQTLVLRRDLEVADGVLPTIPK-------EIRTKVAHFLESQGMKEQALELS---------TDPDQ- 642 (794)
T ss_pred ceEeEeeehHHHHHHHHhhhccccccccccccCch-------hhhhhHHhHhhhccchHhhhhcC---------CChhh-
Confidence 455555554433 456788888776655442 23445566677777777776542 22211
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 005178 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340 (710)
Q Consensus 261 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 340 (710)
-.....+.|+++.|.++..+. -+..-|..|.++....|++..|.+.|..... |..|+-.+...
T Consensus 643 --rFelal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~ 705 (794)
T KOG0276|consen 643 --RFELALKLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSS 705 (794)
T ss_pred --hhhhhhhcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhc
Confidence 123345678888887776554 3567788888888888888888888877654 33466666677
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005178 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388 (710)
Q Consensus 341 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 388 (710)
|+.+....+-....+.| .-|. .| -+|...|+++++.+++..-
T Consensus 706 g~~~~l~~la~~~~~~g-~~N~-AF----~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 706 GNAEGLAVLASLAKKQG-KNNL-AF----LAYFLSGDYEECLELLIST 747 (794)
T ss_pred CChhHHHHHHHHHHhhc-ccch-HH----HHHHHcCCHHHHHHHHHhc
Confidence 77776666666666665 2232 22 2455678888888877655
No 321
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=81.31 E-value=47 Score=31.03 Aligned_cols=28 Identities=14% Similarity=-0.076 Sum_probs=23.1
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 005178 572 FCNCLIDICRNRNLNERAHELLYLGTLY 599 (710)
Q Consensus 572 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 599 (710)
+|--|+.-+...|+.++|..+|+.++..
T Consensus 239 tyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 239 TYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 5556778888999999999999987754
No 322
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=81.15 E-value=57 Score=31.82 Aligned_cols=95 Identities=21% Similarity=0.245 Sum_probs=49.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH----HhCCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHh---CCCCCCCHHHHHH
Q 005178 367 ALIKIYGKARWAKDALELWERM----RENKWPMDFILYNTL-LNMCADIGLVEEAERLFEDMKL---SDYCKPDNYSYTA 438 (710)
Q Consensus 367 ~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~~ 438 (710)
-++..+.+.|.+.+|+.+.+.+ .+..-+++..+...+ -.+|-...++.++..-+...+. .-.|||-...---
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lD 209 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLD 209 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHH
Confidence 4677788888888888765543 333334443322211 2344444555554444433332 2235555555555
Q ss_pred HHHHH--HhCCCHHHHHHHHHHHHH
Q 005178 439 MLNIY--GSGGNVDNAIELFEEMSE 461 (710)
Q Consensus 439 li~~~--~~~g~~~~A~~~~~~m~~ 461 (710)
|+.+. |...++..|..+|-+..+
T Consensus 210 L~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 210 LLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred HhccceeeccccchhHHHHHHHHHh
Confidence 55543 334556667777766654
No 323
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.00 E-value=17 Score=35.74 Aligned_cols=48 Identities=15% Similarity=0.141 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005178 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSI 495 (710)
Q Consensus 448 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 495 (710)
+.++++.++..=++.|+-||..+++.+++.+.+.+++.+|..+.-.|+
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 334555555555555555555555555555555555555555555444
No 324
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=80.44 E-value=14 Score=29.42 Aligned_cols=49 Identities=14% Similarity=0.201 Sum_probs=31.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005178 342 KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390 (710)
Q Consensus 342 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 390 (710)
+..++.+-++.+....+.|+.....+.+++|.+.+++..|.++|+-++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3445555566666666667777777777777777777777777766653
No 325
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=79.42 E-value=1.2e+02 Score=34.66 Aligned_cols=227 Identities=11% Similarity=-0.045 Sum_probs=123.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC----H---HHHHHHHH-HHHHcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHH
Q 005178 302 FGESGDYDGIRYVLQEMKSLGVQPN----L---VVYNTLLE-AMGKAGKPGLARSLFDEMVES----GLTPDEKTLTALI 369 (710)
Q Consensus 302 ~~~~g~~~~A~~~~~~m~~~g~~p~----~---~~~~~li~-~~~~~g~~~~A~~~~~~m~~~----g~~p~~~~~~~li 369 (710)
.....++++|..++.++...-..|+ . ..|+.|-. .....|+++.|.++-+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 3457889999999888765311211 1 13444422 234468889999888877654 1223455666777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-----HHHHHcCC--HHHHHHHHHHHHhC-----CCCCCCHHHHH
Q 005178 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLL-----NMCADIGL--VEEAERLFEDMKLS-----DYCKPDNYSYT 437 (710)
Q Consensus 370 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li-----~~~~~~g~--~~~A~~~~~~~~~~-----~~~~~~~~~~~ 437 (710)
.+..-.|++++|..+..+..+....-+...+.... ..+...|. ..+.+..|...... ....+-..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 77888899999999888776543333444333222 23445663 33333444443332 11112334555
Q ss_pred HHHHHHHhC-CCHHHHHHHHHHHHHcCCCcCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHH
Q 005178 438 AMLNIYGSG-GNVDNAIELFEEMSELGVAINVMG--CTCLIQCLGKARRIDDLVRVFGVSIDRGVK----PDDRLCGCLL 510 (710)
Q Consensus 438 ~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----p~~~~~~~ll 510 (710)
.+..++.+. +...++..-+.--......|-... +..|+..+...|+.++|...++++...... ++...-...+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 566666551 122222222222222222222222 236778888999999999999988754332 2322222233
Q ss_pred HH--HHhcCChHHHHHHHHH
Q 005178 511 SV--VSLCETSEDVGKVITC 528 (710)
Q Consensus 511 ~~--~~~~g~~~~a~~~~~~ 528 (710)
.. -...|+.+.+.....+
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHhcccCCHHHHHHHHHh
Confidence 22 2347787777665554
No 326
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=79.01 E-value=10 Score=37.66 Aligned_cols=91 Identities=7% Similarity=-0.016 Sum_probs=59.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHH
Q 005178 476 QCLGKARRIDDLVRVFGVSIDRGVKP-DDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIK 554 (710)
Q Consensus 476 ~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~ 554 (710)
+-|.++|++++|+..|...+. +.| |.+++..-..+|.+...+..|+.--..+..++-.+.-++..-+.+....| ..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg-~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG-NN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh-hH
Confidence 348999999999999998776 456 78888888889999998888877666666655544444433332222223 34
Q ss_pred HHHHHHHH-hccCCCC
Q 005178 555 EEFRNVIK-DTEVDAR 569 (710)
Q Consensus 555 ~~a~~~~~-~~~~~~~ 569 (710)
++|.+=.+ .+..+|.
T Consensus 182 ~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPK 197 (536)
T ss_pred HHHHHhHHHHHhhCcc
Confidence 44444332 3455665
No 327
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.95 E-value=53 Score=30.20 Aligned_cols=94 Identities=6% Similarity=0.019 Sum_probs=58.9
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 005178 440 LNIYGSGGNVDNAIELFEEMSELGVAIN--VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCE 517 (710)
Q Consensus 440 i~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 517 (710)
...+..+|++++|...++.....-..-+ ...--.|.......|.+|+|+..++...+.+.. ......-.+++...|
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg 173 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcC
Confidence 3456677888888888877664311111 112223455667788888888888776554432 222334456777888
Q ss_pred ChHHHHHHHHHHHHhCCc
Q 005178 518 TSEDVGKVITCLQQANPK 535 (710)
Q Consensus 518 ~~~~a~~~~~~~~~~~p~ 535 (710)
+.++|..-|++..+..++
T Consensus 174 ~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 174 DKQEARAAYEKALESDAS 191 (207)
T ss_pred chHHHHHHHHHHHHccCC
Confidence 888888888888776543
No 328
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=78.94 E-value=5 Score=25.90 Aligned_cols=26 Identities=31% Similarity=0.532 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005178 435 SYTAMLNIYGSGGNVDNAIELFEEMS 460 (710)
Q Consensus 435 ~~~~li~~~~~~g~~~~A~~~~~~m~ 460 (710)
+++.|...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 34444444444444444444444443
No 329
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=78.50 E-value=9 Score=26.81 Aligned_cols=37 Identities=16% Similarity=0.009 Sum_probs=28.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHH
Q 005178 508 CLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIE 544 (710)
Q Consensus 508 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~ 544 (710)
.+.-++.+.|++++|.++.+.+.++.|++..+..+..
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 4556778999999999999999999999888765543
No 330
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=78.31 E-value=2.1e+02 Score=36.81 Aligned_cols=320 Identities=12% Similarity=0.019 Sum_probs=165.7
Q ss_pred HHHHHHHccCChHHHHHHHHHH----HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005178 192 VTMKSLRFGRQFQLIEQLANEM----VSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267 (710)
Q Consensus 192 ~li~~~~~~g~~~~A~~l~~~m----~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 267 (710)
.+..+-.+++.+..|...++.- .+. .-....|-.+...|..-+++|...-+...-.. +...+ .-|-..
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~-~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLY-QQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHH-HHHHHH
Confidence 4445567788888888888873 221 11233444455588888888887776654221 22222 334445
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHHcCCHHHH
Q 005178 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNT-LLEAMGKAGKPGLA 346 (710)
Q Consensus 268 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-li~~~~~~g~~~~A 346 (710)
...|++..|...|+++...+ ++...+++-+++.....|.++.+.-..+-...+- .+....|++ =+.+--+.+++|..
T Consensus 1460 e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhh
Confidence 67899999999999998874 3336778877777777888888777666655431 222333333 23444667777776
Q ss_pred HHHHHHHHHCCCCCCHHHHHHH--HHHHHh--cCCHHHHHHHHHHHHhC--------CCCC-CHHHHHHHHHHHHHcCCH
Q 005178 347 RSLFDEMVESGLTPDEKTLTAL--IKIYGK--ARWAKDALELWERMREN--------KWPM-DFILYNTLLNMCADIGLV 413 (710)
Q Consensus 347 ~~~~~~m~~~g~~p~~~~~~~l--i~~~~~--~g~~~~A~~~~~~m~~~--------~~~~-~~~~~~~li~~~~~~g~~ 413 (710)
..... .. +..+|... .....+ ..+.-.-.+..+.+++. +..- =...|..++....-...-
T Consensus 1538 e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~ 1610 (2382)
T KOG0890|consen 1538 ESYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELE 1610 (2382)
T ss_pred hhhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 66654 11 22223222 222111 11111111222222221 1110 012333343332222111
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH-HHHcCCCc-----CHHHHHHHHHHHHhcCCHHHH
Q 005178 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE-MSELGVAI-----NVMGCTCLIQCLGKARRIDDL 487 (710)
Q Consensus 414 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~~~~p-----~~~~~~~li~~~~~~g~~~~A 487 (710)
..... +..........-+..-|-.-+..-....+..+-+--+++ +......| -..+|....+...+.|+++.|
T Consensus 1611 ~~~~~-l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A 1689 (2382)
T KOG0890|consen 1611 NSIEE-LKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRA 1689 (2382)
T ss_pred HHHHH-hhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHH
Confidence 11111 111110000011122222222221112222222222222 11211122 256788888888899999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 005178 488 VRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQA 532 (710)
Q Consensus 488 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 532 (710)
....-...+.+ .| ..+.....-..+.|+...|+.++++..+.
T Consensus 1690 ~nall~A~e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1690 QNALLNAKESR-LP--EIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHhhhhcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 88887776655 22 44556677788999999999999988753
No 331
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=77.88 E-value=23 Score=32.00 Aligned_cols=25 Identities=12% Similarity=0.163 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHhCCcHHHHHHHHH
Q 005178 520 EDVGKVITCLQQANPKLVAFLNLIE 544 (710)
Q Consensus 520 ~~a~~~~~~~~~~~p~~~~~~~~L~ 544 (710)
+.|...|+++...+|++......|.
T Consensus 97 ~kA~~~FqkAv~~~P~ne~Y~ksLe 121 (186)
T PF06552_consen 97 EKATEYFQKAVDEDPNNELYRKSLE 121 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 4455555555555555555444443
No 332
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=77.57 E-value=5.4 Score=24.44 Aligned_cols=28 Identities=18% Similarity=-0.079 Sum_probs=24.5
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 005178 572 FCNCLIDICRNRNLNERAHELLYLGTLY 599 (710)
Q Consensus 572 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 599 (710)
+|..++..|...|++++|.+.|+++.+.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6778899999999999999999987643
No 333
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=77.35 E-value=77 Score=31.16 Aligned_cols=61 Identities=18% Similarity=0.209 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 005178 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461 (710)
Q Consensus 399 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (710)
+++.....|..+|.+.+|.++.+.....+ +.+...|-.|+..++..|+--.|.+-++++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld--pL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD--PLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC--hhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 34445567777888888888888777766 56777777778888888877777777766643
No 334
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=77.14 E-value=12 Score=30.05 Aligned_cols=47 Identities=15% Similarity=0.244 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 005178 345 LARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN 391 (710)
Q Consensus 345 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 391 (710)
+..+-+..+....+.|+..+..+.+.+|.+.+++..|.++|+-++.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 45555555555666677777777777777777777777777666543
No 335
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=76.37 E-value=54 Score=34.56 Aligned_cols=109 Identities=13% Similarity=-0.021 Sum_probs=71.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHhC---CC-CCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-------cCCCcC---
Q 005178 405 NMCADIGLVEEAERLFEDMKLS---DY-CKP---DNYSYTAMLNIYGSGGNVDNAIELFEEMSE-------LGVAIN--- 467 (710)
Q Consensus 405 ~~~~~~g~~~~A~~~~~~~~~~---~~-~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~~~~p~--- 467 (710)
+.+.-.|++.+|.+++...--. |. +.| ....||.|...+.+.|.+..+..+|..+.+ .|++|.
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 3455678888888887654221 11 011 223457777777778888888777777763 455542
Q ss_pred --------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005178 468 --------VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSL 515 (710)
Q Consensus 468 --------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 515 (710)
..+|| +.-.|...|+.-.|.+.|.+.... +.-++..|-.|..+|.-
T Consensus 328 tls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 328 TLSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred ehhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 23454 344578899999999999888743 45577889888888863
No 336
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=75.36 E-value=42 Score=27.15 Aligned_cols=45 Identities=4% Similarity=-0.051 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005178 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSI 495 (710)
Q Consensus 451 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 495 (710)
+..+-++.+...++-|+.....+.+.+|.+.+++--|+++|+...
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 455556666666677777777777777777777777777777766
No 337
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=75.02 E-value=5.6 Score=24.03 Aligned_cols=27 Identities=11% Similarity=0.038 Sum_probs=15.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCc
Q 005178 509 LLSVVSLCETSEDVGKVITCLQQANPK 535 (710)
Q Consensus 509 ll~~~~~~g~~~~a~~~~~~~~~~~p~ 535 (710)
+..++.+.|++++|.+.|+.+.+..|+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 444555556666666666666555554
No 338
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=74.85 E-value=88 Score=32.72 Aligned_cols=37 Identities=22% Similarity=0.215 Sum_probs=23.4
Q ss_pred HHHHHHhhhcCCCccccCCCCceEEechHHHHHHHhcCCCCCC
Q 005178 667 TAFASHVNKLAAPFRQSEGKAGCFVATREDLVSWVQARPSSIT 709 (710)
Q Consensus 667 ~~~~~~l~~l~~~~~~~~~~~g~~~~~~~~~~~w~~~~~~~~~ 709 (710)
...+.+|+.++.|.- +.|......+..+++.|-.|.+
T Consensus 317 ~~~y~LL~~l~d~l~------~~~~~~~~~l~~~~~~RN~SIL 353 (379)
T PF09670_consen 317 FEAYELLKALGDPLG------QRFYDNLNKLKGLLQKRNQSIL 353 (379)
T ss_pred HHHHHHHHHcCCHHH------HHHHHHHHHHHHHHHHhcccch
Confidence 446677777776632 2234455777888887776654
No 339
>PRK09687 putative lyase; Provisional
Probab=73.30 E-value=1e+02 Score=30.65 Aligned_cols=17 Identities=0% Similarity=-0.203 Sum_probs=7.9
Q ss_pred CHHHHHHHHHHHHhCCC
Q 005178 432 DNYSYTAMLNIYGSGGN 448 (710)
Q Consensus 432 ~~~~~~~li~~~~~~g~ 448 (710)
+..+-...+.++.+.|+
T Consensus 205 ~~~VR~~A~~aLg~~~~ 221 (280)
T PRK09687 205 NEEIRIEAIIGLALRKD 221 (280)
T ss_pred ChHHHHHHHHHHHccCC
Confidence 44444444444444444
No 340
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=73.03 E-value=80 Score=29.31 Aligned_cols=72 Identities=14% Similarity=0.006 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCHHHH
Q 005178 274 EEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL---GVQPNLVVYNTLLEAMGKAGKPGLA 346 (710)
Q Consensus 274 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~A 346 (710)
+.|.+.|-.+...+.--++.....|...|. ..+.++++.++....+. +-.+|+..+..|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 455555555555443333333333333333 44555555555555442 2244555666666666666666555
No 341
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=73.00 E-value=32 Score=27.49 Aligned_cols=62 Identities=13% Similarity=0.055 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 005178 377 WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440 (710)
Q Consensus 377 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li 440 (710)
+.-++.+-++.+......|++.+..+.+++|-+.+++..|.++|+-++.+. ..+...|..++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~--~~~~~~y~~~l 83 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC--GAHKEIYPYIL 83 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc--cCchhhHHHHH
Confidence 444666667777777888888888888999988999999999988877443 22444555554
No 342
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=72.92 E-value=5.8 Score=22.81 Aligned_cols=23 Identities=17% Similarity=0.011 Sum_probs=19.5
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHH
Q 005178 572 FCNCLIDICRNRNLNERAHELLY 594 (710)
Q Consensus 572 ~~~~l~~~~~~~g~~~~A~~~~~ 594 (710)
....|..++...|++++|.++++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34578889999999999999886
No 343
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=72.91 E-value=25 Score=32.82 Aligned_cols=76 Identities=14% Similarity=0.177 Sum_probs=53.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCcCHHHHHHHHHH
Q 005178 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG--VAINVMGCTCLIQC 477 (710)
Q Consensus 400 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~li~~ 477 (710)
.+..+..+.+.+.+.+|+....+-.+.. +.|..+-..+++.|+-.|++++|..-++-.-... ..+-...|..+|.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak--Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK--PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC--CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3445666777788888888888777766 5677777888888888888888887776665532 22335567666654
No 344
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=72.25 E-value=6.4 Score=22.86 Aligned_cols=28 Identities=7% Similarity=-0.111 Sum_probs=13.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCC
Q 005178 507 GCLLSVVSLCETSEDVGKVITCLQQANP 534 (710)
Q Consensus 507 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p 534 (710)
..+...+...|++++|...++...++.|
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 3444444445555555555554444443
No 345
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.93 E-value=83 Score=29.02 Aligned_cols=86 Identities=13% Similarity=0.141 Sum_probs=40.5
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 005178 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFS-----VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340 (710)
Q Consensus 266 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 340 (710)
.+...|++++|+.-++..+.. +....+. .|.+.....|.+|+|+..++.....+. .......-.+.+...
T Consensus 98 ~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~k 172 (207)
T COG2976 98 AEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAK 172 (207)
T ss_pred HHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHc
Confidence 344455555555555554432 1111121 233344555555555555555544321 222233344555556
Q ss_pred CCHHHHHHHHHHHHHC
Q 005178 341 GKPGLARSLFDEMVES 356 (710)
Q Consensus 341 g~~~~A~~~~~~m~~~ 356 (710)
|+-++|+.-|.+..+.
T Consensus 173 g~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 173 GDKQEARAAYEKALES 188 (207)
T ss_pred CchHHHHHHHHHHHHc
Confidence 6666666666555554
No 346
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.48 E-value=1.8e+02 Score=32.70 Aligned_cols=137 Identities=12% Similarity=0.060 Sum_probs=70.7
Q ss_pred cCCCCCHHHHH-----HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHCCC
Q 005178 251 TGLMPDEVTYS-----AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY--DGIRYVLQEMKSLGV 323 (710)
Q Consensus 251 ~g~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~ 323 (710)
.|+..+..-|. .+++-+...+.+..|+++-..+...-.. +..+|.....-+.+..+. +++.+..++=.....
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 35555544443 4556667777888888877776542111 145666666666665322 223333322222111
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005178 324 QPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT----PDEKTLTALIKIYGKARWAKDALELWERMR 389 (710)
Q Consensus 324 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 389 (710)
.....|..+..-....|+.+-|..+++.=...+.. .+..-+..-+.-+.+.|+.+-...++-.+.
T Consensus 505 -~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk 573 (829)
T KOG2280|consen 505 -TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLK 573 (829)
T ss_pred -CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 34456777777777888888888777543222100 011122333444455555555555555444
No 347
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=70.00 E-value=1.4e+02 Score=30.69 Aligned_cols=65 Identities=12% Similarity=0.101 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005178 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTP---DEKTLTALIKIYGKARWAKDALELWERMRE 390 (710)
Q Consensus 326 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 390 (710)
...+|..++..+.+.|+++.|...+..+...+... .......-....-..|+..+|+..++...+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33466677777777777777777777776533111 222333344555566777777777766665
No 348
>PHA02875 ankyrin repeat protein; Provisional
Probab=69.80 E-value=1.1e+02 Score=32.55 Aligned_cols=8 Identities=38% Similarity=0.646 Sum_probs=3.7
Q ss_pred HHCCCCCC
Q 005178 495 IDRGVKPD 502 (710)
Q Consensus 495 ~~~~~~p~ 502 (710)
++.|..++
T Consensus 222 l~~gad~n 229 (413)
T PHA02875 222 IKRGADCN 229 (413)
T ss_pred HHCCcCcc
Confidence 34455444
No 349
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=69.55 E-value=1.4e+02 Score=30.85 Aligned_cols=31 Identities=16% Similarity=0.201 Sum_probs=25.2
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005178 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460 (710)
Q Consensus 430 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 460 (710)
+-.+.++..+-..|...|+...|.+++++.+
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRAL 67 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERAL 67 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5677788888888888888888888888775
No 350
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=69.43 E-value=1.4 Score=38.70 Aligned_cols=84 Identities=14% Similarity=0.088 Sum_probs=57.0
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 005178 439 MLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCET 518 (710)
Q Consensus 439 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 518 (710)
++..+.+.+.......+++.+...+..-+....+.++..|++.++.+...++++... +..+ ..++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~--~yd~-----~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN--NYDL-----DKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS--SS-C-----THHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc--ccCH-----HHHHHHHHhcch
Confidence 456666777777888888888876655667788888888888887777777776221 1222 246677777888
Q ss_pred hHHHHHHHHHH
Q 005178 519 SEDVGKVITCL 529 (710)
Q Consensus 519 ~~~a~~~~~~~ 529 (710)
++++..++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 77777776654
No 351
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=69.24 E-value=34 Score=32.00 Aligned_cols=55 Identities=16% Similarity=0.113 Sum_probs=27.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005178 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283 (710)
Q Consensus 228 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 283 (710)
.+..+.+.+.+.+|+.+.++-++.... |..+-..++..||-.|+|++|..-++-.
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 334444555555555555544444322 3444455555555555555555444443
No 352
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=69.21 E-value=66 Score=29.69 Aligned_cols=60 Identities=12% Similarity=0.073 Sum_probs=30.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005178 436 YTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496 (710)
Q Consensus 436 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 496 (710)
|..-..++.+.+.++.|+.-....++.+.. .......-..+|.+..++++|+.=|+++++
T Consensus 137 y~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ek~eealeDyKki~E 196 (271)
T KOG4234|consen 137 YSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKMEKYEEALEDYKKILE 196 (271)
T ss_pred HhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 333344455555555555555555553221 112222234456666666666666666665
No 353
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=68.28 E-value=1.3e+02 Score=29.63 Aligned_cols=81 Identities=20% Similarity=0.158 Sum_probs=39.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 005178 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLI 475 (710)
Q Consensus 396 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 475 (710)
|......+...|.+.|++.+|+..|-.-. .++...+..++.-....|...++--++- . .+
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~-----~~~~~~~~~ll~~~~~~~~~~e~dlfi~--------------R-aV 148 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGT-----DPSAFAYVMLLEEWSTKGYPSEADLFIA--------------R-AV 148 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS------HHHHHHHHHHHHHHHHHTSS--HHHHHH--------------H-HH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcC-----ChhHHHHHHHHHHHHHhcCCcchhHHHH--------------H-HH
Confidence 56666777777778888777776554322 1223333223333333333322211111 1 22
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 005178 476 QCLGKARRIDDLVRVFGVSID 496 (710)
Q Consensus 476 ~~~~~~g~~~~A~~~~~~m~~ 496 (710)
--|.-.|+...|..+++...+
T Consensus 149 L~yL~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 149 LQYLCLGNLRDANELFDTFTS 169 (260)
T ss_dssp HHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHH
Confidence 235566777777777766654
No 354
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=67.17 E-value=82 Score=27.10 Aligned_cols=75 Identities=11% Similarity=0.071 Sum_probs=51.3
Q ss_pred CcCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHH
Q 005178 465 AINVMGCTCLIQCLGKARR---IDDLVRVFGVSIDRGVKPD--DRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAF 539 (710)
Q Consensus 465 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 539 (710)
.++..+--.+..++.+..+ ..+.+.+++++.+. -.|+ ......|.-++.+.++++.+.++.+.+.+..|++..+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 3555565566667766554 55678888888762 2232 2233345667888999999999999999988888765
Q ss_pred H
Q 005178 540 L 540 (710)
Q Consensus 540 ~ 540 (710)
.
T Consensus 108 ~ 108 (149)
T KOG3364|consen 108 L 108 (149)
T ss_pred H
Confidence 4
No 355
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.85 E-value=1.2e+02 Score=28.89 Aligned_cols=26 Identities=15% Similarity=0.286 Sum_probs=15.5
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCcCH
Q 005178 443 YGSGGNVDNAIELFEEMSELGVAINV 468 (710)
Q Consensus 443 ~~~~g~~~~A~~~~~~m~~~~~~p~~ 468 (710)
-+..+++.+|+++|++.....+..+.
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n~L 189 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDNNL 189 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchH
Confidence 34556677777777776655444333
No 356
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=66.54 E-value=1.9 Score=37.92 Aligned_cols=52 Identities=8% Similarity=0.151 Sum_probs=23.1
Q ss_pred HHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 005178 194 MKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245 (710)
Q Consensus 194 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 245 (710)
|..+.+.+.+.....+++.+...+...+....+.++..|++.+..++..+++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L 65 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFL 65 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHc
Confidence 3444444444455555555544333334444445555555544444444444
No 357
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=65.96 E-value=1.5e+02 Score=29.57 Aligned_cols=146 Identities=12% Similarity=0.123 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHhCCCCCCcHHHHHHHHHHH----HccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCH
Q 005178 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSL----RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKR----CNLF 238 (710)
Q Consensus 167 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~----~g~~ 238 (710)
+..|...+....... +......+...| ....+..+|...|..+.+.|.. .....|...|.. ..+.
T Consensus 57 ~~~a~~~~~~a~~~~----~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~---~a~~~lg~~~~~G~gv~~d~ 129 (292)
T COG0790 57 YAKALKSYEKAAELG----DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLA---EALFNLGLMYANGRGVPLDL 129 (292)
T ss_pred HHHHHHHHHHhhhcC----ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccH---HHHHhHHHHHhcCCCcccCH
Confidence 555666666555432 223333344443 2334577788888777666532 222223333333 3367
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCC
Q 005178 239 DEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG-------KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE----SGD 307 (710)
Q Consensus 239 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-------~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~ 307 (710)
.+|..+|.+..+.|..+-......+...|..-. +...|...|.++-..+ +......|..+|.. ..+
T Consensus 130 ~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d 206 (292)
T COG0790 130 VKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRD 206 (292)
T ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcC
Confidence 777777777777764432222344444443321 2235666666666554 33333334433322 235
Q ss_pred HHHHHHHHHHHHHCC
Q 005178 308 YDGIRYVLQEMKSLG 322 (710)
Q Consensus 308 ~~~A~~~~~~m~~~g 322 (710)
.++|...|...-+.|
T Consensus 207 ~~~A~~wy~~Aa~~g 221 (292)
T COG0790 207 LKKAFRWYKKAAEQG 221 (292)
T ss_pred HHHHHHHHHHHHHCC
Confidence 566666666665554
No 358
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=65.88 E-value=11 Score=25.09 Aligned_cols=26 Identities=27% Similarity=-0.029 Sum_probs=21.9
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcC
Q 005178 575 CLIDICRNRNLNERAHELLYLGTLYG 600 (710)
Q Consensus 575 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 600 (710)
.|..+|...|+.+.|++++++.+..|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 46789999999999999999876443
No 359
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.13 E-value=34 Score=27.31 Aligned_cols=61 Identities=10% Similarity=0.013 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHh
Q 005178 485 DDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIED 545 (710)
Q Consensus 485 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~ 545 (710)
....+.+++....+...-+-....|.-.|+..|+.+.|.+-|+.-..+.|+...+++.|..
T Consensus 54 ~~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~fmDFLmk 114 (121)
T COG4259 54 AALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVFMDFLMK 114 (121)
T ss_pred HHHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhHHHHHHH
Confidence 3445556666644433223334456677889999999999998888889999998888764
No 360
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=64.11 E-value=1.7e+02 Score=29.73 Aligned_cols=80 Identities=15% Similarity=0.137 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh---CCCHHHHHH
Q 005178 378 AKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS---GGNVDNAIE 454 (710)
Q Consensus 378 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~ 454 (710)
.+.-+.++++.++.+. -+......++..+.+..+.++..+.++++.... +-+...|...++.... .-.++....
T Consensus 47 ~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~--~~~~~LW~~yL~~~q~~~~~f~v~~~~~ 123 (321)
T PF08424_consen 47 AERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN--PGSPELWREYLDFRQSNFASFTVSDVRD 123 (321)
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHhccCcHHHHHH
Confidence 3455666777666633 366677777777777777777777788877765 4566777777665544 234555555
Q ss_pred HHHHHH
Q 005178 455 LFEEMS 460 (710)
Q Consensus 455 ~~~~m~ 460 (710)
+|.+.+
T Consensus 124 ~y~~~l 129 (321)
T PF08424_consen 124 VYEKCL 129 (321)
T ss_pred HHHHHH
Confidence 555544
No 361
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=64.08 E-value=1.4e+02 Score=31.63 Aligned_cols=103 Identities=14% Similarity=0.029 Sum_probs=66.8
Q ss_pred HHHHhCCCHHHHHHHHHHHH---HcCCCcC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------CCCCCC---
Q 005178 441 NIYGSGGNVDNAIELFEEMS---ELGVAIN-----VMGCTCLIQCLGKARRIDDLVRVFGVSID-------RGVKPD--- 502 (710)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~m~---~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~~~~p~--- 502 (710)
+.+.-.|++.+|.+++...- ..|...+ ...||.|.-...+.|.+.-+..+|.+.+. .|++|.
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 44667899999999886542 1232212 23456676667778888888888877763 465552
Q ss_pred --------HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHH
Q 005178 503 --------DRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIE 544 (710)
Q Consensus 503 --------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~ 544 (710)
..+||+ .-.|.+.|+.-.|.+.|.+..+....++..|--|+
T Consensus 328 tls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlA 376 (696)
T KOG2471|consen 328 TLSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLA 376 (696)
T ss_pred ehhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 234554 44678899999999999888775444444444443
No 362
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=63.37 E-value=14 Score=22.22 Aligned_cols=25 Identities=24% Similarity=0.309 Sum_probs=19.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 005178 472 TCLIQCLGKARRIDDLVRVFGVSID 496 (710)
Q Consensus 472 ~~li~~~~~~g~~~~A~~~~~~m~~ 496 (710)
-.+..++.+.|++++|.+.|+++++
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3456677788888888888888775
No 363
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=63.30 E-value=5.3e+02 Score=35.11 Aligned_cols=47 Identities=13% Similarity=-0.036 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhcc-----CCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 005178 553 IKEEFRNVIKDTE-----VDARRPFCNCLIDICRNRNLNERAHELLYLGTLY 599 (710)
Q Consensus 553 ~~~~a~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 599 (710)
....+.+.++... .+-....++--+....+.|+.++|.+.|..+.+.
T Consensus 2790 e~~~gLevi~sTNl~yF~~~q~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi 2841 (3550)
T KOG0889|consen 2790 ELKTGLEVIESTNLMYFSDRQKAEFFTLKGMFLEKLGKFEEANKAFSAAVQI 2841 (3550)
T ss_pred HHHHHHHHHhcccHHHHhhHHHHHHHHhhhHHHHHhcCcchhHHHHHHHHHH
Confidence 4444555554422 1223345666677788999999999998887544
No 364
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=63.26 E-value=13 Score=24.76 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=16.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 005178 298 LGKMFGESGDYDGIRYVLQEMKSL 321 (710)
Q Consensus 298 li~~~~~~g~~~~A~~~~~~m~~~ 321 (710)
|..+|...|+.+.|..+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 556677777777777777776654
No 365
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=63.07 E-value=22 Score=27.14 Aligned_cols=46 Identities=9% Similarity=0.174 Sum_probs=29.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCChHHHHHH
Q 005178 480 KARRIDDLVRVFGVSIDRGVKPDDR--LCGCLLSVVSLCETSEDVGKV 525 (710)
Q Consensus 480 ~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~g~~~~a~~~ 525 (710)
...+.++|+..|+..++.-..+... ++.+++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777777554433322 666777777777777666553
No 366
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=62.65 E-value=1.7e+02 Score=29.29 Aligned_cols=133 Identities=15% Similarity=0.108 Sum_probs=69.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----cCCCcCH
Q 005178 393 WPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE----LGVAINV 468 (710)
Q Consensus 393 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~~ 468 (710)
+..|...++.|..+ +...+++-.+..+...+...-.--...+.....-|++.|+.+.|.+.+.+..+ .|.+.|+
T Consensus 66 i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDV 143 (393)
T KOG0687|consen 66 IKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDV 143 (393)
T ss_pred eeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhh
Confidence 34455555555443 22233333333333333211011234566667778888888888877766543 4666666
Q ss_pred HHHHHHH-HHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHH
Q 005178 469 MGCTCLI-QCLGKARRIDDLVRVFGVSIDRGVKPDDR----LCGCLLSVVSLCETSEDVGKVITCL 529 (710)
Q Consensus 469 ~~~~~li-~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~ 529 (710)
..+..-+ -.|..+.-+.+-++..+.+.+.|-..+.. +|..+- |....++.+|..+|-..
T Consensus 144 vf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~ 207 (393)
T KOG0687|consen 144 VFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDS 207 (393)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHH
Confidence 6554333 33444455566666677777776655433 444332 22344566666665544
No 367
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=62.23 E-value=2.2e+02 Score=30.40 Aligned_cols=407 Identities=11% Similarity=0.089 Sum_probs=186.6
Q ss_pred HHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHH
Q 005178 169 KSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIIT-CAKRCNLFDEAIEWFER 247 (710)
Q Consensus 169 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~-~~~~~g~~~~A~~~~~~ 247 (710)
.-..+|+.+..+ +..|+..|...+..+.+.+.+.+...+|.+|+... +-++..|-.... -|-...+++.|..+|.+
T Consensus 89 rIv~lyr~at~r--f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflr 165 (568)
T KOG2396|consen 89 RIVFLYRRATNR--FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLR 165 (568)
T ss_pred HHHHHHHHHHHh--cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHH
Confidence 334445554433 67799999999999988888999999999998753 123444443333 44445568999999988
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH---------HHHHHHH------HHHHhc-------
Q 005178 248 MYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP---------IAFSVLG------KMFGES------- 305 (710)
Q Consensus 248 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~---------~~~~~li------~~~~~~------- 305 (710)
-++.... +...|....+.-. ..+.++..+-...|...+. ..|+... .+..+.
T Consensus 166 gLR~npd-sp~Lw~eyfrmEL-----~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~ 239 (568)
T KOG2396|consen 166 GLRFNPD-SPKLWKEYFRMEL-----MYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAE 239 (568)
T ss_pred HhhcCCC-ChHHHHHHHHHHH-----HHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHH
Confidence 8876432 3444433332211 1111111111111100000 0111000 000000
Q ss_pred --CCHHH-HHHHHHHHHHCCCCCCHHHHHHHHH----HHHH---------------cCCHHHHHHHHHHHHHCCCCCCHH
Q 005178 306 --GDYDG-IRYVLQEMKSLGVQPNLVVYNTLLE----AMGK---------------AGKPGLARSLFDEMVESGLTPDEK 363 (710)
Q Consensus 306 --g~~~~-A~~~~~~m~~~g~~p~~~~~~~li~----~~~~---------------~g~~~~A~~~~~~m~~~g~~p~~~ 363 (710)
....+ -..+.+.+... .+-|+.+|.-+.. ++.+ ..+-+...++|++..+. -++..
T Consensus 240 ~~d~~kel~k~i~d~~~~~-~~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~--l~t~s 316 (568)
T KOG2396|consen 240 KFDFLKELQKNIIDDLQSK-APDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKT--LPTES 316 (568)
T ss_pred HHHHHHHHHHHHHHHHhcc-CCCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHH--hhHHH
Confidence 00001 11122222221 2223333333222 2111 11223445666666543 35556
Q ss_pred HHHHHHHHHHhcC------CHHHHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhCCCCCCCHH
Q 005178 364 TLTALIKIYGKAR------WAKDALELWERMRENK-WPM-DFILYNTLLNMCADIGLVE-EAERLFEDMKLSDYCKPDNY 434 (710)
Q Consensus 364 ~~~~li~~~~~~g------~~~~A~~~~~~m~~~~-~~~-~~~~~~~li~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~ 434 (710)
.|+..|..|...- .+.....+|+...+.+ ..+ ....|..+.-.++...... -|..+..+.. ..+..
T Consensus 317 m~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f-----~~s~k 391 (568)
T KOG2396|consen 317 MWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTELF-----RDSGK 391 (568)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHHh-----cchHH
Confidence 6666666664432 3444455555554432 222 2334555544444444333 3333332332 45666
Q ss_pred HHHHHHHHHHhC-CCHH-HHHHHHHHHHHcCCCcCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHH
Q 005178 435 SYTAMLNIYGSG-GNVD-NAIELFEEMSELGVAINVMGCTCLI-QCLGKARRIDDLVRVFGVSIDRGVKPDDRLCG-CLL 510 (710)
Q Consensus 435 ~~~~li~~~~~~-g~~~-~A~~~~~~m~~~~~~p~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~ll 510 (710)
.|-.-+...... .++. .-..+|......-..+-...|++.. ..+......+..+..+..+ ..|+..++. .++
T Consensus 392 ~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~~~dsl~~~~~~~Ii~a~~s~----~~~~~~tl~s~~l 467 (568)
T KOG2396|consen 392 MWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASASEGDSLQEDTLDLIISALLSV----IGADSVTLKSKYL 467 (568)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHhhccchhHHHHHHHHHHHHHh----cCCceeehhHHHH
Confidence 665555544422 1222 1222233333322223344455444 1111111122222223222 345555443 567
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCc-ccHHHHHHHHHHhc--cCCCChhhHHHHHHHHHhCCCHH
Q 005178 511 SVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGF-ENIKEEFRNVIKDT--EVDARRPFCNCLIDICRNRNLNE 587 (710)
Q Consensus 511 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~-~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~ 587 (710)
.-+.+.|-..+|.+.|..+..+.|-...+..-+....... .-.+.-+.++++.+ .+-.|+..|--....-..+|..+
T Consensus 468 ~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~~g~~e 547 (568)
T KOG2396|consen 468 DWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDYMKEELPLGRPE 547 (568)
T ss_pred HHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHHHHhhccCCCcc
Confidence 7777888889999999998888776544432221110000 00123333333332 11244446666665555677766
Q ss_pred HHHHHHHHH
Q 005178 588 RAHELLYLG 596 (710)
Q Consensus 588 ~A~~~~~~~ 596 (710)
.+-.++.++
T Consensus 548 n~~~~~~ra 556 (568)
T KOG2396|consen 548 NCGQIYWRA 556 (568)
T ss_pred cccHHHHHH
Confidence 665555544
No 368
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=60.67 E-value=3.1e+02 Score=31.61 Aligned_cols=194 Identities=13% Similarity=0.039 Sum_probs=108.8
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHH-HHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHH
Q 005178 337 MGKAGKPGLARSLFDEMVESGLTPDE-------KTLTALIK-IYGKARWAKDALELWERMREN----KWPMDFILYNTLL 404 (710)
Q Consensus 337 ~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~li~-~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~~~~li 404 (710)
.....++++|..++.++...-..|+. ..++.+-. .....|+++.|.++-+..... -..+..+.+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34578999999999887654222221 23333322 223568889999888877653 2334566677778
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCCHH---HHHHHHH--HHHhCCCH--HHHHHHHHHHHHc--CCCc----CHHHH
Q 005178 405 NMCADIGLVEEAERLFEDMKLSDYCKPDNY---SYTAMLN--IYGSGGNV--DNAIELFEEMSEL--GVAI----NVMGC 471 (710)
Q Consensus 405 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~~li~--~~~~~g~~--~~A~~~~~~m~~~--~~~p----~~~~~ 471 (710)
.+..-.|++++|..+..+..+... ..++. .|..+.. .+...|.. .+....|...... +-+| -..++
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~-~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMAR-QHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 888889999999988877765422 23333 3333322 34556733 3333334333321 1111 22344
Q ss_pred HHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCChHHHHHHHHHHHH
Q 005178 472 TCLIQCLGK-ARRIDDLVRVFGVSIDRGVKPDDRLC--GCLLSVVSLCETSEDVGKVITCLQQ 531 (710)
Q Consensus 472 ~~li~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~~~--~~ll~~~~~~g~~~~a~~~~~~~~~ 531 (710)
..+..++.+ .+...++..-++-.......|-...+ ..|+..+...|+.++|...+.++..
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~ 646 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELER 646 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 555555554 12222333333332233333322222 2667788889999999999988865
No 369
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=60.51 E-value=1.2e+02 Score=29.80 Aligned_cols=59 Identities=7% Similarity=-0.046 Sum_probs=25.7
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005178 193 TMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKT 251 (710)
Q Consensus 193 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 251 (710)
=|.+++..++|.++....-+..+.--+.-......-|-.|.+.+.+..+.++-....+.
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~ 147 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQD 147 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 34555555555555544433332211112222333333445555555555555544443
No 370
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=59.52 E-value=3e+02 Score=31.02 Aligned_cols=42 Identities=14% Similarity=0.248 Sum_probs=24.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 005178 263 ILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305 (710)
Q Consensus 263 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 305 (710)
+|-.|.|+|++++|.++..+.... .......+...+..|...
T Consensus 117 ~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 117 LIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 445566777777777777444332 334455666666777664
No 371
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=58.70 E-value=2e+02 Score=28.77 Aligned_cols=18 Identities=11% Similarity=0.387 Sum_probs=10.0
Q ss_pred HhCCCHHHHHHHHHHHHH
Q 005178 444 GSGGNVDNAIELFEEMSE 461 (710)
Q Consensus 444 ~~~g~~~~A~~~~~~m~~ 461 (710)
.+.|+..+|.++|+.+.+
T Consensus 286 RklGrlrEA~K~~RDL~k 303 (556)
T KOG3807|consen 286 RKLGRLREAVKIMRDLMK 303 (556)
T ss_pred HHhhhHHHHHHHHHHHhh
Confidence 345666666666655543
No 372
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=57.87 E-value=2e+02 Score=28.36 Aligned_cols=171 Identities=16% Similarity=0.044 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCC--------CCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 005178 274 EEVLSLYERGVASG--------WKPDPIAFSVLGK-MFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344 (710)
Q Consensus 274 ~~A~~~~~~~~~~g--------~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 344 (710)
+..-.+|.-+.+.| ++.|...+|.|+. .-.+...++++++-.++-- |-.-...++..+..-|++.++.+
T Consensus 55 ~~maplYkyL~E~~n~kt~a~~ikfD~~~~n~l~kkneeki~Elde~i~~~eedn--gE~e~~ea~~n~aeyY~qi~D~~ 132 (412)
T COG5187 55 KCMAPLYKYLAEKGNPKTSASVIKFDRGRMNTLLKKNEEKIEELDERIREKEEDN--GETEGSEADRNIAEYYCQIMDIQ 132 (412)
T ss_pred hhhhHHHHHHHhccCCcccchheehhhHHHHHHHHhhHHHHHHHHHHHHHHhhcc--cchHHHHHHHHHHHHHHHHhhhh
Q ss_pred HHHHHHHHHHHC----CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHHcCCHHHHH
Q 005178 345 LARSLFDEMVES----GLTPDEK-TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM--CADIGLVEEAE 417 (710)
Q Consensus 345 ~A~~~~~~m~~~----g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~--~~~~g~~~~A~ 417 (710)
.+.+..++..+. |.+.|.. +-..|.-.|....-.++-++..+.|.++|...+..--.-.-.+ +....++.+|-
T Consensus 133 ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa 212 (412)
T COG5187 133 NGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAA 212 (412)
T ss_pred hHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHH
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHhCC
Q 005178 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447 (710)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 447 (710)
.++.+....-. ......|...+.-..-+|
T Consensus 213 ~Ll~d~l~tF~-S~El~sY~~~vrYa~~~G 241 (412)
T COG5187 213 ILLSDILPTFE-SSELISYSRAVRYAIFCG 241 (412)
T ss_pred HHHHHHhcccc-ccccccHHHHHHHHHHhh
No 373
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=56.99 E-value=2e+02 Score=28.24 Aligned_cols=87 Identities=10% Similarity=0.181 Sum_probs=39.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----
Q 005178 229 ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE---- 304 (710)
Q Consensus 229 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~---- 304 (710)
|.+++..|+|.++..+.-+..+.--+.-..+...-|-.|.+.+....+.++-..-+..--..+...|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 3455555555555555444433211122333333444455566655555555544432111222334444444433
Q ss_pred -cCCHHHHHHHH
Q 005178 305 -SGDYDGIRYVL 315 (710)
Q Consensus 305 -~g~~~~A~~~~ 315 (710)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 45666665554
No 374
>PHA02875 ankyrin repeat protein; Provisional
Probab=56.07 E-value=1.7e+02 Score=30.98 Aligned_cols=198 Identities=13% Similarity=0.028 Sum_probs=81.8
Q ss_pred HccCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHcCCH
Q 005178 198 RFGRQFQLIEQLANEMVSNEIELDNIT--YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEV--TYSAILDVYAKSGKV 273 (710)
Q Consensus 198 ~~~g~~~~A~~l~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~~ 273 (710)
...|+.+-+.. +.+.|..++... ..+.+..++..|+.+-+ +.+.+.|..|+.. .....+...++.|+.
T Consensus 10 ~~~g~~~iv~~----Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v----~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~ 81 (413)
T PHA02875 10 ILFGELDIARR----LLDIGINPNFEIYDGISPIKLAMKFRDSEAI----KLLMKHGAIPDVKYPDIESELHDAVEEGDV 81 (413)
T ss_pred HHhCCHHHHHH----HHHCCCCCCccCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCccccCCCcccHHHHHHHCCCH
Confidence 34455444333 334555544322 23344445556665433 3334455444322 112234445566777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHH
Q 005178 274 EEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVV--YNTLLEAMGKAGKPGLARSLFD 351 (710)
Q Consensus 274 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~A~~~~~ 351 (710)
+.+..+++.-....-..+.. -.+.+...+..|+.+ +++.+.+.|..++... -.+.+...+..|+.+-+..++
T Consensus 82 ~~v~~Ll~~~~~~~~~~~~~-g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll- 155 (413)
T PHA02875 82 KAVEELLDLGKFADDVFYKD-GMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLI- 155 (413)
T ss_pred HHHHHHHHcCCcccccccCC-CCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-
Confidence 66555554321100000000 112233344455543 4444445555444321 122344445666655443333
Q ss_pred HHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHHcCCHHHHH
Q 005178 352 EMVESGLTPD---EKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL---YNTLLNMCADIGLVEEAE 417 (710)
Q Consensus 352 ~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~---~~~li~~~~~~g~~~~A~ 417 (710)
+.|..++ ..-.+.| ...+..|+.+ +.+.+.+.|..++... ..+++...+..|+.+-+.
T Consensus 156 ---~~g~~~~~~d~~g~TpL-~~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~ 219 (413)
T PHA02875 156 ---DHKACLDIEDCCGCTPL-IIAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVR 219 (413)
T ss_pred ---hcCCCCCCCCCCCCCHH-HHHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHH
Confidence 3333322 1122222 2333455544 3344455555554322 123444344556654433
No 375
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=55.07 E-value=8.2 Score=38.43 Aligned_cols=116 Identities=13% Similarity=0.056 Sum_probs=60.6
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHH
Q 005178 480 KARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRN 559 (710)
Q Consensus 480 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~ 559 (710)
..|.++.|++.|...+..+. +....|..-.+++.+.+....|++-+..+.+++|+...-+-.-+++....|++.++++.
T Consensus 126 n~G~~~~ai~~~t~ai~lnp-~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNP-PLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred cCcchhhhhcccccccccCC-chhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 45667777777776665432 23445555566666777777777777777777777654332223222233545555555
Q ss_pred HHHhccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHH
Q 005178 560 VIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLG 596 (710)
Q Consensus 560 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 596 (710)
+-.....+.|..+-..|=.+.-..+..++-....++.
T Consensus 205 l~~a~kld~dE~~~a~lKeV~p~a~ki~e~~~k~er~ 241 (377)
T KOG1308|consen 205 LALACKLDYDEANSATLKEVFPNAGKIEEHRRKYERA 241 (377)
T ss_pred HHHHHhccccHHHHHHHHHhccchhhhhhchhHHHHH
Confidence 5444444444333333333333344444444344333
No 376
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=54.09 E-value=44 Score=25.59 Aligned_cols=47 Identities=11% Similarity=0.036 Sum_probs=29.3
Q ss_pred hCCCHHHHHHHHHHHHHcCCCcC--HHHHHHHHHHHHhcCCHHHHHHHH
Q 005178 445 SGGNVDNAIELFEEMSELGVAIN--VMGCTCLIQCLGKARRIDDLVRVF 491 (710)
Q Consensus 445 ~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~ 491 (710)
...+.++|+..|....+.-..+. -.++..++.+|+..|++.+++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777666433222 235666777777777777766654
No 377
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.71 E-value=2.5e+02 Score=28.26 Aligned_cols=50 Identities=16% Similarity=0.274 Sum_probs=33.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 005178 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG 271 (710)
Q Consensus 221 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 271 (710)
....+..++.+|+...-.++|+..+++..+.|+- +...|-.-++.+.|..
T Consensus 298 ~~~l~kq~l~~~A~d~aieD~i~~L~~~~r~G~i-~l~~yLr~VR~lsReQ 347 (365)
T KOG2391|consen 298 TAPLYKQILECYALDLAIEDAIYSLGKSLRDGVI-DLDQYLRHVRLLSREQ 347 (365)
T ss_pred cchHHHHHHHhhhhhhHHHHHHHHHHHHHhcCee-eHHHHHHHHHHHHHHH
Confidence 4456677777777777777777788887777754 6666655555555543
No 378
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=52.58 E-value=2.3e+02 Score=27.58 Aligned_cols=168 Identities=10% Similarity=0.009 Sum_probs=101.5
Q ss_pred hcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHH-H
Q 005178 374 KARWAKDALELWERMRENKWP-MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD-N 451 (710)
Q Consensus 374 ~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~ 451 (710)
+......|+++-...+..+.. -++..|...+--.. ..++.+=.+.++++.+.+ +.|-..|..-=......|+.. .
T Consensus 55 ~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l-~~dL~~El~~l~eI~e~n--pKNYQvWHHRr~ive~l~d~s~r 131 (318)
T KOG0530|consen 55 KNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHL-MSDLNKELEYLDEIIEDN--PKNYQVWHHRRVIVELLGDPSFR 131 (318)
T ss_pred ccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhC--ccchhHHHHHHHHHHHhcCcccc
Confidence 444556666666666654322 02222322221111 124666777788888776 677777764433444455655 6
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCC-----hHHHHHH
Q 005178 452 AIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSL-CET-----SEDVGKV 525 (710)
Q Consensus 452 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~g~-----~~~a~~~ 525 (710)
=+.+.+.|+..+-+ |..+|..--.++..-+.++.=+.+..+|++.++. |...||.-.-.... .|- .++-..+
T Consensus 132 ELef~~~~l~~DaK-NYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~-NNSAWN~Ryfvi~~~~~~~~~~~le~El~y 209 (318)
T KOG0530|consen 132 ELEFTKLMLDDDAK-NYHAWSHRQWVLRFFKDYEDELAYADELLEEDIR-NNSAWNQRYFVITNTKGVISKAELERELNY 209 (318)
T ss_pred hHHHHHHHHhcccc-chhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhh-ccchhheeeEEEEeccCCccHHHHHHHHHH
Confidence 67778888775444 7778877777777788899999999999987776 33445532222222 121 2333445
Q ss_pred HHHHHHhCCcHHHHHHHHHhh
Q 005178 526 ITCLQQANPKLVAFLNLIEDN 546 (710)
Q Consensus 526 ~~~~~~~~p~~~~~~~~L~~~ 546 (710)
...+....|++...++.|...
T Consensus 210 t~~~I~~vP~NeSaWnYL~G~ 230 (318)
T KOG0530|consen 210 TKDKILLVPNNESAWNYLKGL 230 (318)
T ss_pred HHHHHHhCCCCccHHHHHHHH
Confidence 666677889999888877543
No 379
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=52.26 E-value=3.9e+02 Score=30.12 Aligned_cols=49 Identities=8% Similarity=-0.212 Sum_probs=31.1
Q ss_pred HhcCCHHHHHHHHHHHHHCCC-CCC-------HHHHHHHHHHHHhcCChHHHHHHHH
Q 005178 479 GKARRIDDLVRVFGVSIDRGV-KPD-------DRLCGCLLSVVSLCETSEDVGKVIT 527 (710)
Q Consensus 479 ~~~g~~~~A~~~~~~m~~~~~-~p~-------~~~~~~ll~~~~~~g~~~~a~~~~~ 527 (710)
+-.|++..|...++.|.+..- .|+ ..++....-.+-..|+.+.|...|.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 457889999999998874311 111 1122222223345799999999997
No 380
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=51.47 E-value=2.6e+02 Score=27.79 Aligned_cols=50 Identities=16% Similarity=0.253 Sum_probs=23.7
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhC
Q 005178 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAK----SGKVEEVLSLYERGVAS 286 (710)
Q Consensus 234 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~ 286 (710)
..+++..+...+......+ +......+...|.. ..+..+|..+|..+.+.
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~ 106 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAAD 106 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhc
Confidence 3456666666666665532 22333333333332 12345555555544444
No 381
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.30 E-value=4.6e+02 Score=30.69 Aligned_cols=116 Identities=16% Similarity=0.140 Sum_probs=68.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHCCCCC--------C
Q 005178 260 YSAILDVYAKSGKVEEVLSLYERGVASG---WKPDPIAFSVLGKMFGESGDY--DGIRYVLQEMKSLGVQP--------N 326 (710)
Q Consensus 260 ~~~li~~~~~~g~~~~A~~~~~~~~~~g---~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p--------~ 326 (710)
|..|+..|...|+.++|++++.+..+.. -..-...+.-++.-+.+.+.- +-+++.-+...+....- |
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 7888888989999999999988887632 011122233344444444443 44444333333221000 0
Q ss_pred H---HHH-HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005178 327 L---VVY-NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA 375 (710)
Q Consensus 327 ~---~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 375 (710)
. .+. ...+-.|......+-+..+++.+....-..+..-.+.++..|++.
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~ 639 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEK 639 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHH
Confidence 0 000 012345677888899999999998765566777788888888653
No 382
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=51.16 E-value=86 Score=29.04 Aligned_cols=36 Identities=14% Similarity=0.231 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Q 005178 499 VKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANP 534 (710)
Q Consensus 499 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 534 (710)
..|+..+|..++.++...|+.++|.+..+++...-|
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 467777777777777777777777777777777777
No 383
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=50.86 E-value=29 Score=36.49 Aligned_cols=99 Identities=11% Similarity=-0.043 Sum_probs=50.4
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCcCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHH
Q 005178 444 GSGGNVDNAIELFEEMSELGVAINVMGC-TCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR-LCGCLLSVVSLCETSED 521 (710)
Q Consensus 444 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~ 521 (710)
...+.++.|..++.++++ ..||...| ..-..++.+.+.+..|+.=+.++++.. |+.. .|.-=..+|...+.+.+
T Consensus 15 l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred cccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHHHHHH
Confidence 344556666666666665 33433322 222245556666666665555555432 3322 22222334444555566
Q ss_pred HHHHHHHHHHhCCcHHHHHHHHHhh
Q 005178 522 VGKVITCLQQANPKLVAFLNLIEDN 546 (710)
Q Consensus 522 a~~~~~~~~~~~p~~~~~~~~L~~~ 546 (710)
|...|+....+.|+...+...+..|
T Consensus 91 A~~~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 91 ALLDLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHhhhcCcCcHHHHHHHHHH
Confidence 6666666666666666665555443
No 384
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=50.24 E-value=2.7e+02 Score=27.70 Aligned_cols=234 Identities=14% Similarity=0.068 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 005178 218 IELDNITYSTIIT--CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAF 295 (710)
Q Consensus 218 ~~p~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~ 295 (710)
+.|....++-+|+ .|...+--++..+++.-+.-. .++...--+++.+..-.+ |..|..+.-
T Consensus 107 i~~~~qvf~KliRRykyLeK~fE~e~~k~Llflk~F--~e~Er~KLA~~Tal~l~n---------------Gt~~~tvl~ 169 (412)
T KOG2297|consen 107 IRNSVQVFQKLIRRYKYLEKNFENEMRKFLLFLKLF--EENERKKLAMLTALLLSN---------------GTLPATVLQ 169 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHHHhC---------------CCCCHHHHH
Q ss_pred HHHHHHHHhcCCHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005178 296 SVLGKMFGESGDYDG-IRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK 374 (710)
Q Consensus 296 ~~li~~~~~~g~~~~-A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 374 (710)
..+=..+.+.|-.-. |.++|.... .....+.++..+-+.+.-+.-.++| +|+..+-..+...+..
T Consensus 170 ~L~~d~LVkeGi~l~F~~~lFk~~~------~Ek~i~~lis~Lrkg~md~rLmeff--------Ppnkrs~E~Fak~Ft~ 235 (412)
T KOG2297|consen 170 SLLNDNLVKEGIALSFAVKLFKEWL------VEKDINDLISSLRKGKMDDRLMEFF--------PPNKRSVEHFAKYFTD 235 (412)
T ss_pred HHHHhhHHHHhHHHHHHHHHHHHHH------hhccHHHHHHHHHhcChHhHHHHhc--------CCcchhHHHHHHHHhH
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 005178 375 ARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIE 454 (710)
Q Consensus 375 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 454 (710)
.|--+-..-.-.++-.. .-...-..|..-..+...+++......+-.+... -|+......+-++....+.|.+-.+
T Consensus 236 agL~elvey~~~q~~~~---a~kElq~~L~~q~s~e~p~~evi~~VKee~k~~n-lPe~eVi~ivWs~iMsaveWnKkee 311 (412)
T KOG2297|consen 236 AGLKELVEYHRNQQSEG---ARKELQKELQEQVSEEDPVKEVILYVKEEMKRNN-LPETEVIGIVWSGIMSAVEWNKKEE 311 (412)
T ss_pred hhHHHHHHHHHHHHHHH---HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcC-CCCceEEeeeHhhhhHHHhhchHHH
Q ss_pred HHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 005178 455 LFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRV 490 (710)
Q Consensus 455 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 490 (710)
+..+-.- ....+|.-|+.+++..|+.+-.+-+
T Consensus 312 lva~qal----rhlK~yaPLL~af~s~g~sEL~Ll~ 343 (412)
T KOG2297|consen 312 LVAEQAL----RHLKQYAPLLAAFCSQGQSELELLL 343 (412)
T ss_pred HHHHHHH----HHHHhhhHHHHHHhcCChHHHHHHH
No 385
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=50.15 E-value=2e+02 Score=27.29 Aligned_cols=98 Identities=15% Similarity=0.073 Sum_probs=49.7
Q ss_pred CCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC---CHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 005178 183 FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIEL---DNITYS--TIITCAKRCNLFDEAIEWFERMYKTGLMPDE 257 (710)
Q Consensus 183 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 257 (710)
+.....-.|.|+--|.-...+.+|.+.|.. +.|+.+ |..+++ .-|......|+.++|++....+...-+.-|.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Confidence 455555566666555555555555555543 333333 333333 3445667778888887777766443233333
Q ss_pred HHHHHHH----HHHHHcCCHHHHHHHHHH
Q 005178 258 VTYSAIL----DVYAKSGKVEEVLSLYER 282 (710)
Q Consensus 258 ~~~~~li----~~~~~~g~~~~A~~~~~~ 282 (710)
..+-.|. --..+.|..++|++..+.
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 2222221 113455555555555543
No 386
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=49.59 E-value=45 Score=24.22 Aligned_cols=25 Identities=8% Similarity=-0.079 Sum_probs=12.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 005178 471 CTCLIQCLGKARRIDDLVRVFGVSI 495 (710)
Q Consensus 471 ~~~li~~~~~~g~~~~A~~~~~~m~ 495 (710)
.-.+|.+|...|++++|.++.+++.
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344555555555555555555443
No 387
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=49.35 E-value=1.2e+02 Score=24.81 Aligned_cols=75 Identities=12% Similarity=-0.004 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005178 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491 (710)
Q Consensus 412 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 491 (710)
..++|..|.+-+...+ .-....--+-+..+.+.|+|++|...= .....||...|.+|- -.+.|-.+++...+
T Consensus 21 cH~EA~tIa~wL~~~~--~~~E~v~lIr~~sLmNrG~Yq~ALl~~----~~~~~pdL~p~~AL~--a~klGL~~~~e~~l 92 (116)
T PF09477_consen 21 CHQEANTIADWLEQEG--EMEEVVALIRLSSLMNRGDYQEALLLP----QCHCYPDLEPWAALC--AWKLGLASALESRL 92 (116)
T ss_dssp -HHHHHHHHHHHHHTT--TTHHHHHHHHHHHHHHTT-HHHHHHHH----TTS--GGGHHHHHHH--HHHCT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHhhHHHHHHHHhc----ccCCCccHHHHHHHH--HHhhccHHHHHHHH
Confidence 3455555555555433 112222222233344555555551111 111234555554442 23455555555555
Q ss_pred HHH
Q 005178 492 GVS 494 (710)
Q Consensus 492 ~~m 494 (710)
.++
T Consensus 93 ~rl 95 (116)
T PF09477_consen 93 TRL 95 (116)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 388
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=48.77 E-value=3e+02 Score=28.78 Aligned_cols=56 Identities=16% Similarity=0.217 Sum_probs=38.3
Q ss_pred HHHHccCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHH--cCCHHHHHHHHHHHHHc
Q 005178 195 KSLRFGRQFQLIEQLANEMVSNEIELDNI--TYSTIITCAKR--CNLFDEAIEWFERMYKT 251 (710)
Q Consensus 195 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--~~~~li~~~~~--~g~~~~A~~~~~~m~~~ 251 (710)
..+...+++..|.++|+.+..+ +.++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455788999999999999887 554444 44445455544 45677888888877654
No 389
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.69 E-value=4e+02 Score=29.18 Aligned_cols=155 Identities=13% Similarity=0.108 Sum_probs=89.0
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHh
Q 005178 440 LNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG-KARRIDDLVRVFGVSIDR---GVKPDDRLCGCLLSVVSL 515 (710)
Q Consensus 440 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~ll~~~~~ 515 (710)
|....+.|.+..|.++.+-+.+....-|......+|+.|+ ++.++.-.+++++..... ..-||-..-.+|...|.+
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~ 428 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLR 428 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHh
Confidence 4456678888888888888888665557777777887775 677788888888777432 334555444455555655
Q ss_pred cCC---hHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHHHHhccCCCChhhHHHHHHHHHhCCCH----HH
Q 005178 516 CET---SEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLN----ER 588 (710)
Q Consensus 516 ~g~---~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~ 588 (710)
... -+.|...+.++....|.. +..++-.+..... ..-.-..+.......+..+.+..++..|+..... .+
T Consensus 429 ~~~~~~rqsa~~~l~qAl~~~P~v--l~eLld~~~l~~d-a~~~~~k~~~~~a~~~e~pal~~lv~lY~~r~~~vWk~P~ 505 (665)
T KOG2422|consen 429 KNEEDDRQSALNALLQALKHHPLV--LSELLDELLLGDD-ALTKDLKFDGSSAENSELPALMLLVKLYANRNEEVWKLPD 505 (665)
T ss_pred cCChhhHHHHHHHHHHHHHhCcHH--HHHHHHhccCCch-hhhhhhcccccccccccchHHHHHHHHHHhhhhHhhcChH
Confidence 443 345566666666666632 1122222222111 1111122222222344556888888888876542 34
Q ss_pred HHHHHHHHH
Q 005178 589 AHELLYLGT 597 (710)
Q Consensus 589 A~~~~~~~~ 597 (710)
+...++.+.
T Consensus 506 ~ls~l~~~~ 514 (665)
T KOG2422|consen 506 VLSFLESAY 514 (665)
T ss_pred HHHHHHHHH
Confidence 455555443
No 390
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=48.68 E-value=1.3e+02 Score=32.66 Aligned_cols=88 Identities=7% Similarity=0.076 Sum_probs=43.7
Q ss_pred HccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005178 198 RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL 277 (710)
Q Consensus 198 ~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 277 (710)
...|+...|.+.+....-....-..+..-.|.....+.|...+|..++.+.+... .....++..+.++|.-..+++.|+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHH
Confidence 4456666666665555433111112223333444444555555555555554432 223445555555565566666666
Q ss_pred HHHHHHHhC
Q 005178 278 SLYERGVAS 286 (710)
Q Consensus 278 ~~~~~~~~~ 286 (710)
+.|++..+.
T Consensus 697 ~~~~~a~~~ 705 (886)
T KOG4507|consen 697 EAFRQALKL 705 (886)
T ss_pred HHHHHHHhc
Confidence 666655554
No 391
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=48.60 E-value=1.3e+02 Score=25.56 Aligned_cols=47 Identities=15% Similarity=0.300 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 005178 345 LARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN 391 (710)
Q Consensus 345 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 391 (710)
+..+.+..+...++.|+......-+.+|.+.+++..|..+|+-++.+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 44455555556666777777777777777777777777777766643
No 392
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=48.54 E-value=1.5e+02 Score=24.10 Aligned_cols=50 Identities=18% Similarity=0.119 Sum_probs=23.4
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 005178 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427 (710)
Q Consensus 372 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 427 (710)
+.+.|++++|..+.+.+ +.||...|.+|.. .+.|..+.+..-+.++..+|
T Consensus 49 LmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 49 LMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 34455555555544433 3445555444332 24444444444444554444
No 393
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=48.29 E-value=2.7e+02 Score=27.10 Aligned_cols=225 Identities=13% Similarity=0.135 Sum_probs=109.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC---CC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCH----HHHH
Q 005178 297 VLGKMFGESGDYDGIRYVLQEMKSL---GV--QPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES-GLTPDE----KTLT 366 (710)
Q Consensus 297 ~li~~~~~~g~~~~A~~~~~~m~~~---g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~----~~~~ 366 (710)
.+|..+.+.|++++....|.+|... .+ .-+..+.|.+++...-..+.+.-..+|+.-.+. .-..+. .|-+
T Consensus 70 QmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNt 149 (440)
T KOG1464|consen 70 QMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNT 149 (440)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccc
Confidence 3445555555555555555554321 00 112334555555554444444444444322211 000111 1223
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHH
Q 005178 367 ALIKIYGKARWAKDALELWERMREN------------KWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNY 434 (710)
Q Consensus 367 ~li~~~~~~g~~~~A~~~~~~m~~~------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 434 (710)
-|...|...+.+....++++++... |-. -..+|..-|++|....+-.....++++.......-|.+.
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQ-LLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl 228 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQ-LLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL 228 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccch-hhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH
Confidence 4556666667777777777666432 111 234677778888888887777788877654332246655
Q ss_pred HHHHHHH----HHHhCCCHHHHHHHHHHHHH----cCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC
Q 005178 435 SYTAMLN----IYGSGGNVDNAIELFEEMSE----LGVAIN--VMGCTCLIQCLGKARRIDDLVRVFGVSIDR--GVKPD 502 (710)
Q Consensus 435 ~~~~li~----~~~~~g~~~~A~~~~~~m~~----~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~ 502 (710)
....+-. +..+.|.+++|..=|-++-+ .|-+.. ..-|..|.+.+.+.|- .-|+.-... .-.|.
T Consensus 229 ImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~i-----NPFDsQEAKPyKNdPE 303 (440)
T KOG1464|consen 229 IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGI-----NPFDSQEAKPYKNDPE 303 (440)
T ss_pred HHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCC-----CCCcccccCCCCCCHH
Confidence 5544322 34567888887655444433 232211 1224444444444331 001110011 11334
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHH
Q 005178 503 DRLCGCLLSVVSLCETSEDVGKVITC 528 (710)
Q Consensus 503 ~~~~~~ll~~~~~~g~~~~a~~~~~~ 528 (710)
....+.|+.+|-. ++..+-+++++.
T Consensus 304 IlAMTnlv~aYQ~-NdI~eFE~Il~~ 328 (440)
T KOG1464|consen 304 ILAMTNLVAAYQN-NDIIEFERILKS 328 (440)
T ss_pred HHHHHHHHHHHhc-ccHHHHHHHHHh
Confidence 4466778877754 444555555544
No 394
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=48.17 E-value=2.7e+02 Score=27.09 Aligned_cols=189 Identities=10% Similarity=0.094 Sum_probs=111.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHC---CC--CCCHHHHHHHHHHHHhcCC
Q 005178 306 GDYDGIRYVLQEMKSLGVQPNLV---VYNTLLEAMGKAGKPGLARSLFDEMVES---GL--TPDEKTLTALIKIYGKARW 377 (710)
Q Consensus 306 g~~~~A~~~~~~m~~~g~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~--~p~~~~~~~li~~~~~~g~ 377 (710)
...++|+.-|+++.+..-+.... +...+|..+.+.|++++..+.|.+|... .+ .-+..+.|+++.......+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 46677777777776642222222 3345678888999999999999888632 11 2245567777776666666
Q ss_pred HHHHHHHHHHHHh----C-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC---CC-------CHHHHHHHHHH
Q 005178 378 AKDALELWERMRE----N-KWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC---KP-------DNYSYTAMLNI 442 (710)
Q Consensus 378 ~~~A~~~~~~m~~----~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~-------~~~~~~~li~~ 442 (710)
.+--.++|+.-.+ . +-+.=..|-.-|...|...|.+....+++.++...-.. .. -...|..=|++
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 6555555543322 1 10111113345667777788888888888877653110 11 13567777888
Q ss_pred HHhCCCHHHHHHHHHHHHHc-CCCcCHHHHHHHHHHH-----HhcCCHHHHHH-HHHHHH
Q 005178 443 YGSGGNVDNAIELFEEMSEL-GVAINVMGCTCLIQCL-----GKARRIDDLVR-VFGVSI 495 (710)
Q Consensus 443 ~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~-----~~~g~~~~A~~-~~~~m~ 495 (710)
|....+-.....+|++.+.- ..-|...... +|+-| .+.|++++|-. +|+...
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHHh
Confidence 88888888888888876542 1223333332 33333 45677777653 344433
No 395
>PRK10941 hypothetical protein; Provisional
Probab=46.90 E-value=1.6e+02 Score=29.10 Aligned_cols=65 Identities=8% Similarity=0.000 Sum_probs=42.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHH
Q 005178 472 TCLIQCLGKARRIDDLVRVFGVSIDRGVKPD-DRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVA 538 (710)
Q Consensus 472 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 538 (710)
+.+-.+|.+.++++.|+++.+.++.. .|+ ..-+.--.-.|.+.|.+..|..-++...+.-|++..
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l--~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~ 250 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQF--DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI 250 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh
Confidence 34555677777777777777777763 343 333444555677777777777777777666666544
No 396
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=46.02 E-value=3.3e+02 Score=27.40 Aligned_cols=109 Identities=13% Similarity=0.141 Sum_probs=59.5
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHHcCCHHHHH
Q 005178 200 GRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTY--SAILDVYAKSGKVEEVL 277 (710)
Q Consensus 200 ~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~--~~li~~~~~~g~~~~A~ 277 (710)
.--+.+|+++|++.++.| ..+|+.- ..+...|. ..+.+.+++ .++.+| ..|.-+..+.|+..+|.
T Consensus 229 a~Ti~~AE~l~k~ALka~----e~~yr~s-qq~qh~~~------~~da~~rRD--tnvl~YIKRRLAMCARklGrlrEA~ 295 (556)
T KOG3807|consen 229 ATTIVDAERLFKQALKAG----ETIYRQS-QQCQHQSP------QHEAQLRRD--TNVLVYIKRRLAMCARKLGRLREAV 295 (556)
T ss_pred hhhHHHHHHHHHHHHHHH----HHHHhhH-HHHhhhcc------chhhhhhcc--cchhhHHHHHHHHHHHHhhhHHHHH
Confidence 344667788887777652 2333311 11112222 223334442 244444 33444445678888888
Q ss_pred HHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 005178 278 SLYERGVASGWKPDP---IAFSVLGKMFGESGDYDGIRYVLQEMKSLGV 323 (710)
Q Consensus 278 ~~~~~~~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 323 (710)
+.|+++.+. .|=. .....|+.++....-+.++..++.+..+...
T Consensus 296 K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYDdisl 342 (556)
T KOG3807|consen 296 KIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISL 342 (556)
T ss_pred HHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 888877654 2222 2334677788777777777777766665443
No 397
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=45.52 E-value=23 Score=30.18 Aligned_cols=34 Identities=32% Similarity=0.414 Sum_probs=25.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005178 478 LGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVV 513 (710)
Q Consensus 478 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 513 (710)
....|.-.+|..+|++|++.|-.||. |+.|+..+
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 34556677888899999988888875 77777543
No 398
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=44.71 E-value=2.2e+02 Score=24.99 Aligned_cols=79 Identities=13% Similarity=0.132 Sum_probs=35.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHH
Q 005178 330 YNTLLEAMGKAGKPGLARSLFDEMVESG-----LTPDEKTLTALIKIYGKARW-AKDALELWERMRENKWPMDFILYNTL 403 (710)
Q Consensus 330 ~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~l 403 (710)
.|.++.-....++......+++.+.... -..+...|.+++.+.++..- --.+..+|+.+.+.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3444444444455555554444442110 01223345555555544333 23344555555554555555555555
Q ss_pred HHHHH
Q 005178 404 LNMCA 408 (710)
Q Consensus 404 i~~~~ 408 (710)
+.++.
T Consensus 122 i~~~l 126 (145)
T PF13762_consen 122 IKAAL 126 (145)
T ss_pred HHHHH
Confidence 55443
No 399
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.70 E-value=5.8e+02 Score=29.93 Aligned_cols=117 Identities=15% Similarity=0.156 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CC-CCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHCCCCCCHHHHH--
Q 005178 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLG--VQ-PNLVVYNTLLEAMGKAGKP--GLARSLFDEMVESGLTPDEKTLT-- 366 (710)
Q Consensus 294 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~-p~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~~~~~~-- 366 (710)
-|..|+..|...|+.++|++++.+....- .. .-...+..++.-+.+.+.. +-..++-+...+....-....++
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 47889999999999999999999998732 01 1112233455555555544 44444444433321000000110
Q ss_pred ----------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 005178 367 ----------ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410 (710)
Q Consensus 367 ----------~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 410 (710)
.-+-.|......+.+..+++.+....-..+....+.++..|+..
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~ 639 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEK 639 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHH
Confidence 12335677888999999999998877777888888888888753
No 400
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=44.50 E-value=8.7e+02 Score=31.89 Aligned_cols=150 Identities=12% Similarity=0.048 Sum_probs=89.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH----HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005178 297 VLGKMFGESGDYDGIRYVLQEM----KSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIY 372 (710)
Q Consensus 297 ~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 372 (710)
++..+=.+++.+..|...++.- .+. .....-|..+...|+..+++|....+...-.. .|+ ...-|...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s---l~~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS---LYQQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc---HHHHHHHH
Confidence 4445566778888888888873 221 11223445555588888888887777664211 222 22344455
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHH-HHHHHhCCCHHH
Q 005178 373 GKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAM-LNIYGSGGNVDN 451 (710)
Q Consensus 373 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~ 451 (710)
...|++..|..-|+.+...+.. ...+++-++......|.++..+...+-..... .+....|+.+ +.+-.+.+++|.
T Consensus 1460 e~~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~--se~~~~~~s~~~eaaW~l~qwD~ 1536 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIINR--SEEVDELNSLGVEAAWRLSQWDL 1536 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhcc--CHHHHHHHHHHHHHHhhhcchhh
Confidence 6678888888888888766322 35566666666666777777777665555433 2333334333 334466777776
Q ss_pred HHHHHH
Q 005178 452 AIELFE 457 (710)
Q Consensus 452 A~~~~~ 457 (710)
......
T Consensus 1537 ~e~~l~ 1542 (2382)
T KOG0890|consen 1537 LESYLS 1542 (2382)
T ss_pred hhhhhh
Confidence 665554
No 401
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=44.34 E-value=3.3e+02 Score=30.77 Aligned_cols=117 Identities=12% Similarity=0.171 Sum_probs=62.5
Q ss_pred CHHHHHHHHHhcc---CHHHHHHHHHHHHhCCCC-----CCcH-HHHHHHHHHHHccCChHHHHHHHHHHHHCC--CCCC
Q 005178 153 TRENALLILNSLK---FWQKSYFFFNWIKSQNLF-----PMET-IFYNVTMKSLRFGRQFQLIEQLANEMVSNE--IELD 221 (710)
Q Consensus 153 ~~~~~~~~l~~l~---~~~~A~~~~~~~~~~~~~-----~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~ 221 (710)
+.+.+..++-++. +++.-+.+.+.+.+..+. .+++ +.|.-.++--.+-|+-++|+.+.-.|.+.. +.||
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD 279 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD 279 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc
Confidence 3444444444444 477777777777665310 1111 122222333344577888888877777642 5566
Q ss_pred HH-----HHHHHH--HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 005178 222 NI-----TYSTII--TCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG 271 (710)
Q Consensus 222 ~~-----~~~~li--~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 271 (710)
.. .|--+. +.|...+..+.|.++|++..+. .|+...-..+...+...|
T Consensus 280 m~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFev--eP~~~sGIN~atLL~aaG 334 (1226)
T KOG4279|consen 280 MYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEV--EPLEYSGINLATLLRAAG 334 (1226)
T ss_pred eeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhcc--CchhhccccHHHHHHHhh
Confidence 53 222221 1445556778889999887764 565554433333333333
No 402
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=43.90 E-value=63 Score=36.00 Aligned_cols=63 Identities=11% Similarity=0.073 Sum_probs=22.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005178 256 DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320 (710)
Q Consensus 256 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 320 (710)
+...-.-++..|.+.|-.+.|.++.+.+-..- ....-|..-+..+.+.|+...+..+.+.+.+
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~--~~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~ 466 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRL--LKEGRYGEALSWFIRAGDYSLVTRIADRLLE 466 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-----------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44445555566666666666666655443321 1123344555555666666655555555443
No 403
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=43.74 E-value=2e+02 Score=24.40 Aligned_cols=44 Identities=7% Similarity=0.157 Sum_probs=26.4
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005178 487 LVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQ 530 (710)
Q Consensus 487 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 530 (710)
..+.++.+...++.|+..+...-+.+|-+.+++..|.++|+-+.
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 33444455555666666666666666666666666666666554
No 404
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=43.69 E-value=3.7e+02 Score=27.35 Aligned_cols=78 Identities=12% Similarity=0.005 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCChHHHHHH
Q 005178 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSL---CETSEDVGKV 525 (710)
Q Consensus 449 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~---~g~~~~a~~~ 525 (710)
.+.-+.+++++++.+. -+...+..++..+.+....++..+-+++++..... +...|...+..... .-.+++...+
T Consensus 47 ~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 3455667777776643 35666677777777777777777777777764322 45566666665443 2234455555
Q ss_pred HHH
Q 005178 526 ITC 528 (710)
Q Consensus 526 ~~~ 528 (710)
|.+
T Consensus 125 y~~ 127 (321)
T PF08424_consen 125 YEK 127 (321)
T ss_pred HHH
Confidence 444
No 405
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=43.25 E-value=96 Score=28.71 Aligned_cols=32 Identities=16% Similarity=0.223 Sum_probs=16.6
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 005178 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461 (710)
Q Consensus 430 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (710)
.|+..+|..++..+...|+.++|.++.+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35555555555555555555555555555444
No 406
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=42.80 E-value=96 Score=33.60 Aligned_cols=148 Identities=11% Similarity=0.022 Sum_probs=83.7
Q ss_pred CCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHH
Q 005178 359 TPDEKTLTALIKIYGKA--RWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY 436 (710)
Q Consensus 359 ~p~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 436 (710)
.|+..+..+++.-.... ..-+.+-.++..|... ..|--.+.|...--+--.|+...|...+........ .-.-+..
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~~-~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p-~~~~v~~ 645 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINKP-NAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAP-LQQDVPL 645 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcCC-CCCeEEEeecccceeeecCCcHHHHHHHHHHhccCh-hhhcccH
Confidence 45665555554433322 2234555566655442 222222222222222345777777777776654432 1222344
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005178 437 TAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510 (710)
Q Consensus 437 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 510 (710)
..|.+...+.|....|..++.+.+... .....++..+.++|.-..+++.|++.|+..++...+ +.+.-+.|.
T Consensus 646 v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~-~~~~~~~l~ 717 (886)
T KOG4507|consen 646 VNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTK-CPECENSLK 717 (886)
T ss_pred HHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCC-ChhhHHHHH
Confidence 556666667777778888887776644 235567777888888888888888888888765433 334444443
No 407
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=42.55 E-value=1.6e+02 Score=23.21 Aligned_cols=15 Identities=20% Similarity=0.093 Sum_probs=7.0
Q ss_pred cCCHHHHHHHHHHHH
Q 005178 235 CNLFDEAIEWFERMY 249 (710)
Q Consensus 235 ~g~~~~A~~~~~~m~ 249 (710)
.|+.+.|.+++..+.
T Consensus 49 ~g~~~~ar~LL~~L~ 63 (88)
T cd08819 49 HGNESGARELLKRIV 63 (88)
T ss_pred cCcHHHHHHHHHHhc
Confidence 344444444444444
No 408
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=42.39 E-value=86 Score=21.33 Aligned_cols=31 Identities=6% Similarity=0.089 Sum_probs=14.3
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005178 199 FGRQFQLIEQLANEMVSNEIELDNITYSTII 229 (710)
Q Consensus 199 ~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li 229 (710)
+.|-.+++..++++|.+.|+..+...|..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3344444445555555444444444444433
No 409
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=42.05 E-value=3.5e+02 Score=26.66 Aligned_cols=32 Identities=25% Similarity=0.310 Sum_probs=19.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 005178 333 LLEAMGKAGKPGLARSLFDEMVESGLTPDEKT 364 (710)
Q Consensus 333 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 364 (710)
+.+-..+.+++++|+..|.++...|+..+..+
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~ 40 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKT 40 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhh
Confidence 44455566667777777777666666555433
No 410
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=41.35 E-value=1e+02 Score=20.95 Aligned_cols=32 Identities=13% Similarity=0.185 Sum_probs=17.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005178 479 GKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510 (710)
Q Consensus 479 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 510 (710)
.+.|-.+++..++++|.+.|+..+...+..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34555556666666666666555555555443
No 411
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=41.26 E-value=2.5e+02 Score=24.66 Aligned_cols=82 Identities=16% Similarity=0.205 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHH
Q 005178 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEI-----ELDNITYSTIITCAKRCNL-FDEAIEWFERMYKTGLMPDEVTYS 261 (710)
Q Consensus 188 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-----~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~ 261 (710)
...|.++.-....+++.-...+++.+..... ..+...|++++.+..+... ---+..+|+-|.+.+.+.+..-|.
T Consensus 40 ~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~ 119 (145)
T PF13762_consen 40 IFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYS 119 (145)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 3356666666666666666666665532100 1233445555555543333 223444555555544555555555
Q ss_pred HHHHHHHH
Q 005178 262 AILDVYAK 269 (710)
Q Consensus 262 ~li~~~~~ 269 (710)
.+|.++.+
T Consensus 120 ~li~~~l~ 127 (145)
T PF13762_consen 120 CLIKAALR 127 (145)
T ss_pred HHHHHHHc
Confidence 55555443
No 412
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=41.17 E-value=3.9e+02 Score=26.95 Aligned_cols=65 Identities=12% Similarity=0.111 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH----hCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHCC
Q 005178 258 VTYSAILDVYAKSGKVEEVLSLYERGV----ASGWKPDPIAFSVLGK-MFGESGDYDGIRYVLQEMKSLG 322 (710)
Q Consensus 258 ~~~~~li~~~~~~g~~~~A~~~~~~~~----~~g~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g 322 (710)
..+-.....||+-|+.+.|++.+.+.. ..|.+.|+..+.+-+. .|....-+.+-++..+.+.+.|
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~G 174 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEG 174 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhC
Confidence 445556667788888777777765543 3455666655544333 2333333334444444444444
No 413
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=41.06 E-value=5.9e+02 Score=28.93 Aligned_cols=154 Identities=11% Similarity=0.059 Sum_probs=73.2
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHH----HHHcc-----C--C-----hHHHHHHHHHHHHCCCCC
Q 005178 157 ALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMK----SLRFG-----R--Q-----FQLIEQLANEMVSNEIEL 220 (710)
Q Consensus 157 ~~~~l~~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~----~~~~~-----g--~-----~~~A~~l~~~m~~~g~~p 220 (710)
+..++..++.+++|+.+--.......+.++...+..++. .|... + . -+.-..++++|..+..
T Consensus 65 ~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~yi~~~~~~~~~~~~~~~iD~rL~~iv~rmi~kcl-- 142 (929)
T KOG2062|consen 65 ASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDMYIETASETYKNPEQKSPIDQRLRDIVERMIQKCL-- 142 (929)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHHHHhh--
Confidence 345677788899998876554333334444444444433 22111 0 1 2344555555555422
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhC---CCCCCHHHH
Q 005178 221 DNITYSTIITCAKRCNLFDEAIEWFERM-YKTGLMPDEVTYSAILDVYAKSGK-VEEVLSLYERGVAS---GWKPDPIAF 295 (710)
Q Consensus 221 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~---g~~~~~~~~ 295 (710)
+..-|..+|.......++ .++++. .+.. .+....+.++..+....+ -+--.+++..+.+. +-.|| |
T Consensus 143 ~d~e~~~aiGia~E~~rl----d~ie~Ail~~d--~~~~~~~yll~l~~s~v~~~efR~~vlr~lv~~y~~~~~PD---y 213 (929)
T KOG2062|consen 143 DDNEYKQAIGIAFETRRL----DIIEEAILKSD--SVIGNLTYLLELLISLVNNREFRNKVLRLLVKTYLKLPSPD---Y 213 (929)
T ss_pred hhhHHHHHHhHHhhhhhH----HHHHHHhcccc--ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCCC---e
Confidence 222233333322222222 222221 1221 122233444444433332 22223333333322 12344 4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005178 296 SVLGKMFGESGDYDGIRYVLQEMKSL 321 (710)
Q Consensus 296 ~~li~~~~~~g~~~~A~~~~~~m~~~ 321 (710)
-.+..+|.-..+.+.+.++++++.+.
T Consensus 214 ~~vc~c~v~Ldd~~~va~ll~kL~~e 239 (929)
T KOG2062|consen 214 FSVCQCYVFLDDAEAVADLLEKLVKE 239 (929)
T ss_pred eeeeeeeEEcCCHHHHHHHHHHHHhc
Confidence 45677888889999999999999874
No 414
>PRK11619 lytic murein transglycosylase; Provisional
Probab=41.06 E-value=5.9e+02 Score=28.94 Aligned_cols=322 Identities=10% Similarity=-0.009 Sum_probs=0.0
Q ss_pred HHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 005178 194 MKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKV 273 (710)
Q Consensus 194 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 273 (710)
..-..+.|++..+..+...+...-+ ..-..|..+..... ....++...++++-... ......-...+..+.+.+++
T Consensus 40 A~~a~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l~-~~~~~ev~~Fl~~~~~~--P~~~~Lr~~~l~~La~~~~w 115 (644)
T PRK11619 40 IKQAWDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDLM-NQPAVQVTNFIRANPTL--PPARSLQSRFVNELARREDW 115 (644)
T ss_pred HHHHHHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhccc-cCCHHHHHHHHHHCCCC--chHHHHHHHHHHHHHHccCH
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005178 274 EEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353 (710)
Q Consensus 274 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 353 (710)
...+..+..- +.+...-.....+....|+.++|......+=..| .......+.++..+.+.|.+.... ++..|
T Consensus 116 ~~~~~~~~~~-----p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~lt~~d-~w~R~ 188 (644)
T PRK11619 116 RGLLAFSPEK-----PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGKQDPLA-YLERI 188 (644)
T ss_pred HHHHHhcCCC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCCCCHHH-HHHHH
Q ss_pred HHCCCCCCHHHHHHHHHHH---------HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005178 354 VESGLTPDEKTLTALIKIY---------GKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424 (710)
Q Consensus 354 ~~~g~~p~~~~~~~li~~~---------~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 424 (710)
...=...+...-..++..+ ....-......+.......+.......+..+.-.-....+.+.|..++....
T Consensus 189 ~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~ 268 (644)
T PRK11619 189 RLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFARTTGPTDFTRQMAAVAFASVARQDAENARLMIPSLV 268 (644)
T ss_pred HHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhccCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHH
Q ss_pred hCCCCCCCHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 005178 425 LSDYCKPDNYSYTAMLNIYGSGGN--VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502 (710)
Q Consensus 425 ~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 502 (710)
......+.......-.-++.-... .++|...++.... ...+......-+..-.+.++++.+...+..|....-. .
T Consensus 269 ~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~--~~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~-~ 345 (644)
T PRK11619 269 RAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIM--RSQSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKE-K 345 (644)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccc--ccCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhcc-C
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 005178 503 DRLCGCLLSVVSLCETSEDVGKVITCL 529 (710)
Q Consensus 503 ~~~~~~ll~~~~~~g~~~~a~~~~~~~ 529 (710)
..-..=+..++...|+.++|..+|+.+
T Consensus 346 ~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 346 DEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHH
No 415
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=40.86 E-value=2.9e+02 Score=25.33 Aligned_cols=20 Identities=15% Similarity=0.278 Sum_probs=9.9
Q ss_pred HHHHcCCHHHHHHHHHHHHh
Q 005178 266 VYAKSGKVEEVLSLYERGVA 285 (710)
Q Consensus 266 ~~~~~g~~~~A~~~~~~~~~ 285 (710)
.|.+.|.+++|.+++++...
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc
Confidence 34455555555555554443
No 416
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=39.86 E-value=2e+02 Score=23.31 Aligned_cols=79 Identities=18% Similarity=0.191 Sum_probs=49.9
Q ss_pred CHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 005178 166 FWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245 (710)
Q Consensus 166 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 245 (710)
..++|..+-+|+.... .....+--+-+..+...|++++|..+.+.+ ..||...|-.+-. .+.|..+++...+
T Consensus 20 cHqEA~tIAdwL~~~~--~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl 91 (115)
T TIGR02508 20 CHQEANTIADWLHLKG--ESEEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRL 91 (115)
T ss_pred HHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHH
Confidence 4677777788876553 112223333344567788888888777665 3577777766543 4567777777777
Q ss_pred HHHHHcC
Q 005178 246 ERMYKTG 252 (710)
Q Consensus 246 ~~m~~~g 252 (710)
.+|...|
T Consensus 92 ~rla~sg 98 (115)
T TIGR02508 92 NRLAASG 98 (115)
T ss_pred HHHHhCC
Confidence 7776665
No 417
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=39.43 E-value=2.2e+02 Score=23.47 Aligned_cols=81 Identities=16% Similarity=0.205 Sum_probs=46.6
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005178 164 LKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243 (710)
Q Consensus 164 l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 243 (710)
....++|..+.+|+....+ ....+--+-+..+...|++++|. . . ......||...|-.| +-.+.|.-+++..
T Consensus 19 ~HcH~EA~tIa~wL~~~~~--~~E~v~lIr~~sLmNrG~Yq~AL--l-~-~~~~~~pdL~p~~AL--~a~klGL~~~~e~ 90 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE--MEEVVALIRLSSLMNRGDYQEAL--L-L-PQCHCYPDLEPWAAL--CAWKLGLASALES 90 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT--THHHHHHHHHHHHHHTT-HHHHH--H-H-HTTS--GGGHHHHHH--HHHHCT-HHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHhhHHHHHHH--H-h-cccCCCccHHHHHHH--HHHhhccHHHHHH
Confidence 3457888888888887642 23333334445567888888882 1 1 122235677776555 3456788888888
Q ss_pred HHHHHHHcC
Q 005178 244 WFERMYKTG 252 (710)
Q Consensus 244 ~~~~m~~~g 252 (710)
.+.++...|
T Consensus 91 ~l~rla~~g 99 (116)
T PF09477_consen 91 RLTRLASSG 99 (116)
T ss_dssp HHHHHCT-S
T ss_pred HHHHHHhCC
Confidence 887776654
No 418
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=39.16 E-value=2.4e+02 Score=23.96 Aligned_cols=42 Identities=12% Similarity=0.195 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 005178 451 NAIELFEEMSELGVAIN-VMGCTCLIQCLGKARRIDDLVRVFG 492 (710)
Q Consensus 451 ~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~ 492 (710)
.+..+|..|...|+.-. ...|......+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44444444444443322 2334444444444444444444443
No 419
>PRK13342 recombination factor protein RarA; Reviewed
Probab=39.12 E-value=5e+02 Score=27.54 Aligned_cols=21 Identities=33% Similarity=0.422 Sum_probs=10.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCC
Q 005178 306 GDYDGIRYVLQEMKSLGVQPN 326 (710)
Q Consensus 306 g~~~~A~~~~~~m~~~g~~p~ 326 (710)
++.+.|+.++..|.+.|..|.
T Consensus 244 sd~~aal~~l~~~l~~G~d~~ 264 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPL 264 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 455555555555555554443
No 420
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=39.00 E-value=5.9e+02 Score=28.91 Aligned_cols=120 Identities=12% Similarity=0.155 Sum_probs=70.7
Q ss_pred HHHHHHHHHHhCCCCCCcH---HHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHH----------HHHHHHHHHHHc
Q 005178 169 KSYFFFNWIKSQNLFPMET---IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNI----------TYSTIITCAKRC 235 (710)
Q Consensus 169 ~A~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----------~~~~li~~~~~~ 235 (710)
+--..+++|+.+.+ .|++ .+-..++-.|....+++..+++.+.+... ||.. .|...++---+.
T Consensus 181 ~l~~~L~~mR~RlD-np~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~ 256 (1226)
T KOG4279|consen 181 QLNDYLDKMRTRLD-NPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRP 256 (1226)
T ss_pred HHHHHHHHHHhhcC-CccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCC
Confidence 33455677776543 2332 33455666788888999999999988774 4332 122223323345
Q ss_pred CCHHHHHHHHHHHHHc--CCCCCHHHH-----HH--HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 005178 236 NLFDEAIEWFERMYKT--GLMPDEVTY-----SA--ILDVYAKSGKVEEVLSLYERGVASGWKPDPIA 294 (710)
Q Consensus 236 g~~~~A~~~~~~m~~~--g~~~~~~~~-----~~--li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~ 294 (710)
|+-++|+...-.|.+. .+.||.... .- +-+.|...+..+.|.+.|++..+. .|+..+
T Consensus 257 GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFev--eP~~~s 322 (1226)
T KOG4279|consen 257 GDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEV--EPLEYS 322 (1226)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhcc--Cchhhc
Confidence 7788888887777665 345665432 11 122344455677788888877663 455443
No 421
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=37.95 E-value=2.2e+02 Score=26.09 Aligned_cols=22 Identities=18% Similarity=0.434 Sum_probs=15.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 005178 404 LNMCADIGLVEEAERLFEDMKL 425 (710)
Q Consensus 404 i~~~~~~g~~~~A~~~~~~~~~ 425 (710)
+-.|.+.|.+++|.+++++...
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc
Confidence 4456777777777777777765
No 422
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=37.87 E-value=3.8e+02 Score=25.86 Aligned_cols=69 Identities=9% Similarity=0.037 Sum_probs=47.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHH
Q 005178 471 CTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFL 540 (710)
Q Consensus 471 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 540 (710)
+..+-+++...|++-++++--.+.+.... -+...|..-..+-+..=+..+|..-|..+.+++|....++
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~~-~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV 301 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHHP-GNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV 301 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence 44455667777888888888888776432 2444565555566666677888888888888888776654
No 423
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=37.85 E-value=4.5e+02 Score=26.68 Aligned_cols=112 Identities=12% Similarity=0.053 Sum_probs=65.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh------cCChHHHHHHHHHHHHhCCcHHHHHHH-HHhhcCCcccHHH
Q 005178 483 RIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSL------CETSEDVGKVITCLQQANPKLVAFLNL-IEDNSTGFENIKE 555 (710)
Q Consensus 483 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~------~g~~~~a~~~~~~~~~~~p~~~~~~~~-L~~~~~~~~~~~~ 555 (710)
-++++..++++....+. |........|.++-. .-+|.....+|..+..+.|+...-+|- ..... -.-.+
T Consensus 271 lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSPvV~LNRAVAla~---~~Gp~ 346 (415)
T COG4941 271 LIDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSPVVTLNRAVALAM---REGPA 346 (415)
T ss_pred HHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCCeEeehHHHHHHH---hhhHH
Confidence 35666667766665543 555555555544432 345666777777777777765422211 11000 01234
Q ss_pred HHHHHHHhccCCC----ChhhHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 005178 556 EFRNVIKDTEVDA----RRPFCNCLIDICRNRNLNERAHELLYLGTL 598 (710)
Q Consensus 556 ~a~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 598 (710)
.+...++.+..+| ....+..-.+.|.+.|+.++|...|++++.
T Consensus 347 agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~ 393 (415)
T COG4941 347 AGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIA 393 (415)
T ss_pred hHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 4445555544442 233567788999999999999999999864
No 424
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=37.46 E-value=1.2e+02 Score=21.24 Aligned_cols=29 Identities=21% Similarity=0.278 Sum_probs=15.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 005178 474 LIQCLGKARRIDDLVRVFGVSIDRGVKPDDR 504 (710)
Q Consensus 474 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 504 (710)
+.-++.+.|++++|.+..+.+++ +.|+..
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~ 35 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNR 35 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-H
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcH
Confidence 34455666666666666666665 345443
No 425
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=37.40 E-value=3.4e+02 Score=25.10 Aligned_cols=55 Identities=13% Similarity=0.151 Sum_probs=31.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCC--------------CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005178 367 ALIKIYGKARWAKDALELWERMRENKWP--------------MDFILYNTLLNMCADIGLVEEAERLFE 421 (710)
Q Consensus 367 ~li~~~~~~g~~~~A~~~~~~m~~~~~~--------------~~~~~~~~li~~~~~~g~~~~A~~~~~ 421 (710)
+++..|-+.-++.+++++++.|.+..+. +--...|.....+.+.|.+|.|..+++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 4566677777788888887777654221 122233444445555555555555544
No 426
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=37.38 E-value=4.3e+02 Score=26.27 Aligned_cols=117 Identities=9% Similarity=0.066 Sum_probs=67.3
Q ss_pred CCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHH-cC-CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 005178 376 RWAKDALELWERMRE-NKWPMDFILYNTLLNMCAD-IG-LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNA 452 (710)
Q Consensus 376 g~~~~A~~~~~~m~~-~~~~~~~~~~~~li~~~~~-~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 452 (710)
..+.+|+++|+.... ..+--|..+...+++.... .+ ....-.++.+-+.....-.++..+....++.++..+++.+-
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 345566666663221 1233355555555555544 11 22233333333433311156777777777888888888888
Q ss_pred HHHHHHHHHc-CCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005178 453 IELFEEMSEL-GVAINVMGCTCLIQCLGKARRIDDLVRVFG 492 (710)
Q Consensus 453 ~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 492 (710)
.++++..... +..-|...|..+|......|+..-..++.+
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 7777776654 555677778888888888877665544443
No 427
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=37.05 E-value=78 Score=22.96 Aligned_cols=21 Identities=19% Similarity=0.366 Sum_probs=8.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 005178 228 IITCAKRCNLFDEAIEWFERM 248 (710)
Q Consensus 228 li~~~~~~g~~~~A~~~~~~m 248 (710)
+|.++...|++++|.+.++++
T Consensus 29 vI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 333444444444444444443
No 428
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=36.88 E-value=7.1e+02 Score=28.68 Aligned_cols=57 Identities=16% Similarity=0.112 Sum_probs=34.5
Q ss_pred hCCCHHHHHHHHHHHHHcCCCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 005178 445 SGGNVDNAIELFEEMSELGVAINVM-GCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502 (710)
Q Consensus 445 ~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 502 (710)
.+++++.+..+++.....|.. +.. .|...++.-...|+...+..+++.....-..|+
T Consensus 474 l~~nmd~~R~iWn~imty~~~-~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~ 531 (881)
T KOG0128|consen 474 LLKNMDKAREIWNFIMTYGGG-SIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPE 531 (881)
T ss_pred HhhchhhhhHhhhccccCCcc-hHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCch
Confidence 356777777777776665433 222 455555555566777777776666665545554
No 429
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=36.85 E-value=3.9e+02 Score=25.71 Aligned_cols=12 Identities=8% Similarity=0.401 Sum_probs=6.3
Q ss_pred HHHHHHHhhhcC
Q 005178 666 ATAFASHVNKLA 677 (710)
Q Consensus 666 ~~~~~~~l~~l~ 677 (710)
+..|..||+.+.
T Consensus 235 ra~I~Ehl~rvg 246 (284)
T KOG4642|consen 235 RADIEEHLQRVG 246 (284)
T ss_pred HHHHHHHHHHhc
Confidence 455555555543
No 430
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=36.51 E-value=3.3e+02 Score=27.61 Aligned_cols=88 Identities=11% Similarity=0.149 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHC---CCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCH
Q 005178 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSN---EIELDNITYS--TIITCAKRCNLFDEAIEWFERMYK-----TGLMPDE 257 (710)
Q Consensus 188 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~ 257 (710)
.....++......++.++|.+.++++.+. --.|+.+.|. .+..++...|+..++.+.+++..+ .|+.+++
T Consensus 76 slvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~V 155 (380)
T KOG2908|consen 76 SLVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNV 155 (380)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhh
Confidence 34455666667777899999999888753 2245666554 344577788999999999888877 5777754
Q ss_pred H-HHHHHHHHHHH-cCCHHH
Q 005178 258 V-TYSAILDVYAK-SGKVEE 275 (710)
Q Consensus 258 ~-~~~~li~~~~~-~g~~~~ 275 (710)
. .|+.+-.-|.+ .|++..
T Consensus 156 h~~fY~lssqYyk~~~d~a~ 175 (380)
T KOG2908|consen 156 HSSFYSLSSQYYKKIGDFAS 175 (380)
T ss_pred hhhHHHHHHHHHHHHHhHHH
Confidence 4 45555555544 455544
No 431
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=35.89 E-value=5.7e+02 Score=27.28 Aligned_cols=107 Identities=19% Similarity=0.270 Sum_probs=55.9
Q ss_pred HHHHhhCCCCCCHHH-HHHHHHhccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC
Q 005178 142 LRAITEIPHQPTREN-ALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIEL 220 (710)
Q Consensus 142 ~~~l~~~~~~~~~~~-~~~~l~~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 220 (710)
..+|+.....|.... -..+...++.++.+++.+...... +-....+...+++...+.|++++|..+-+-|+...++
T Consensus 313 ~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~--~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie- 389 (831)
T PRK15180 313 FAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI--IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE- 389 (831)
T ss_pred HHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh--hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-
Confidence 344444433333322 223455566666666666555433 2233445566666666666777776666666655544
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005178 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKT 251 (710)
Q Consensus 221 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 251 (710)
+..............|-++++.-.++++...
T Consensus 390 ~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 390 DEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred ChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 3333333333334455666666666666544
No 432
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=35.78 E-value=4e+02 Score=27.19 Aligned_cols=63 Identities=16% Similarity=0.232 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005178 204 QLIEQLANEMVSNEIELDN----ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268 (710)
Q Consensus 204 ~~A~~l~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 268 (710)
+++..++.+++.. -|+. .-|-+++......|.++.++.+|++.+..|..|-...-..+++.+-
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 3555555555544 2343 3566666677777777777777777777777776666666666544
No 433
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=35.66 E-value=1.9e+02 Score=28.13 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=12.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 005178 402 TLLNMCADIGLVEEAERLFEDM 423 (710)
Q Consensus 402 ~li~~~~~~g~~~~A~~~~~~~ 423 (710)
.+..-|...|++++|.++|+.+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3444555556666665555554
No 434
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=35.39 E-value=2.2e+02 Score=22.56 Aligned_cols=19 Identities=5% Similarity=0.123 Sum_probs=10.0
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 005178 477 CLGKARRIDDLVRVFGVSI 495 (710)
Q Consensus 477 ~~~~~g~~~~A~~~~~~m~ 495 (710)
.....|+.++|+..+++.+
T Consensus 50 ~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 50 LHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHhCCHHHHHHHHHHHH
Confidence 3444555555555555554
No 435
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=35.09 E-value=41 Score=28.74 Aligned_cols=33 Identities=12% Similarity=0.047 Sum_probs=23.9
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005178 197 LRFGRQFQLIEQLANEMVSNEIELDNITYSTIITC 231 (710)
Q Consensus 197 ~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~ 231 (710)
+.+-|.-.+|-.+|..|+++|-+|| .|+.|+..
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 4455666778888888888887776 46777654
No 436
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=34.97 E-value=58 Score=34.30 Aligned_cols=107 Identities=12% Similarity=0.073 Sum_probs=67.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHH
Q 005178 476 QCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGC-LLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIK 554 (710)
Q Consensus 476 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~ 554 (710)
.-+.+.+.++.|+.++.++++ +.||...|.+ =..++.+.+++..|..-..++.+.+|...-++-.-|.+....++..
T Consensus 12 n~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred hhhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHH
Confidence 345678899999999999988 5676554443 3367888999999999999999999987643322111111123233
Q ss_pred HHHHHHHHhccCCCChhhHHHHHHHHHhCC
Q 005178 555 EEFRNVIKDTEVDARRPFCNCLIDICRNRN 584 (710)
Q Consensus 555 ~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g 584 (710)
++...+.......|+.+-..-.++-|-+..
T Consensus 90 ~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~v 119 (476)
T KOG0376|consen 90 KALLDLEKVKKLAPNDPDATRKIDECNKIV 119 (476)
T ss_pred HHHHHHHHhhhcCcCcHHHHHHHHHHHHHH
Confidence 333334344556676665555555555443
No 437
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=34.97 E-value=3.8e+02 Score=25.37 Aligned_cols=24 Identities=17% Similarity=0.362 Sum_probs=13.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 005178 298 LGKMFGESGDYDGIRYVLQEMKSL 321 (710)
Q Consensus 298 li~~~~~~g~~~~A~~~~~~m~~~ 321 (710)
+.....+.|++++|.+.|.++...
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcC
Confidence 344445556666666666655553
No 438
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=34.73 E-value=3.7e+02 Score=24.84 Aligned_cols=18 Identities=17% Similarity=0.104 Sum_probs=9.3
Q ss_pred HHHcCCHHHHHHHHHHHH
Q 005178 232 AKRCNLFDEAIEWFERMY 249 (710)
Q Consensus 232 ~~~~g~~~~A~~~~~~m~ 249 (710)
....|++++|..-++++.
T Consensus 39 ~~H~~~~eeA~~~l~~a~ 56 (204)
T COG2178 39 LLHRGDFEEAEKKLKKAS 56 (204)
T ss_pred HHHhccHHHHHHHHHHHH
Confidence 334455555555555543
No 439
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=34.51 E-value=1.7e+02 Score=23.26 Aligned_cols=24 Identities=17% Similarity=0.272 Sum_probs=17.0
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHH
Q 005178 438 AMLNIYGSGGNVDNAIELFEEMSE 461 (710)
Q Consensus 438 ~li~~~~~~g~~~~A~~~~~~m~~ 461 (710)
.+.......|+.++|...+++.++
T Consensus 46 ~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 46 NLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345556677888888888877765
No 440
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=34.45 E-value=4.1e+02 Score=25.16 Aligned_cols=62 Identities=8% Similarity=0.084 Sum_probs=33.1
Q ss_pred HHHHHHHHHhcCC-------HHHHHHHHHHHHHCCCCC----CHH-HHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 005178 471 CTCLIQCLGKARR-------IDDLVRVFGVSIDRGVKP----DDR-LCGCLLSVVSLCETSEDVGKVITCLQQA 532 (710)
Q Consensus 471 ~~~li~~~~~~g~-------~~~A~~~~~~m~~~~~~p----~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 532 (710)
+..+...|...|+ ...|++.|.+..+..-.| +.. +...+.....+.|+.++|.+.|.++.+.
T Consensus 121 ~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 121 CLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 3334444555555 234555665555332221 222 3334455566788888888888777653
No 441
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.10 E-value=2.5e+02 Score=32.33 Aligned_cols=128 Identities=12% Similarity=-0.031 Sum_probs=65.4
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 005178 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDV 522 (710)
Q Consensus 443 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a 522 (710)
+..+|+++.|++.-..+ -+..+|..|+..-...|+.+-|...|++... |..|--.|.-.|+.+..
T Consensus 653 aLe~gnle~ale~akkl------dd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL 717 (1202)
T KOG0292|consen 653 ALECGNLEVALEAAKKL------DDKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKL 717 (1202)
T ss_pred ehhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHH
Confidence 34566666666554433 2556677777777777777777666665433 22233344555666655
Q ss_pred HHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHHHHhccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005178 523 GKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGT 597 (710)
Q Consensus 523 ~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 597 (710)
.++.+.++..+--...+.+.|-. | ..++-..+++.-+.-|- .|- .-..+|.-++|.++.++..
T Consensus 718 ~Km~~iae~r~D~~~~~qnalYl-----~-dv~ervkIl~n~g~~~l--ayl----ta~~~G~~~~ae~l~ee~~ 780 (1202)
T KOG0292|consen 718 SKMMKIAEIRNDATGQFQNALYL-----G-DVKERVKILENGGQLPL--AYL----TAAAHGLEDQAEKLGEELE 780 (1202)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHh-----c-cHHHHHHHHHhcCcccH--HHH----HHhhcCcHHHHHHHHHhhc
Confidence 55554443222222222222211 2 33444444444333332 221 1235787888888887764
No 442
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=33.99 E-value=31 Score=34.53 Aligned_cols=90 Identities=12% Similarity=-0.052 Sum_probs=66.8
Q ss_pred hcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHHHHhccCCCChh-hHHHHHHHHHhCCCHHHHHHHH
Q 005178 515 LCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRP-FCNCLIDICRNRNLNERAHELL 593 (710)
Q Consensus 515 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~ 593 (710)
..|.+++|++.|-...+++|....+..--+..+.+......+.+.+-..+.+.||.. -|-.-..+.+-.|++++|...|
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 467789999999999999998877654444444444545566677767777777755 4555566778899999999999
Q ss_pred HHHHHcCCCCc
Q 005178 594 YLGTLYGLYPG 604 (710)
Q Consensus 594 ~~~~~~~~~~~ 604 (710)
..+.+.++.+.
T Consensus 206 ~~a~kld~dE~ 216 (377)
T KOG1308|consen 206 ALACKLDYDEA 216 (377)
T ss_pred HHHHhccccHH
Confidence 99887776554
No 443
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=33.67 E-value=2.2e+02 Score=32.13 Aligned_cols=10 Identities=10% Similarity=0.269 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 005178 628 ALEEWMWTLA 637 (710)
Q Consensus 628 Al~~~~~~~~ 637 (710)
.++.+++.+.
T Consensus 1042 VmDslLeaLq 1051 (1102)
T KOG1924|consen 1042 VMDSLLEALQ 1051 (1102)
T ss_pred hHHHHHHHHH
Confidence 3334444433
No 444
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=33.66 E-value=5.6e+02 Score=26.56 Aligned_cols=95 Identities=15% Similarity=0.168 Sum_probs=53.6
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHC------CCCCCHHHHHHHHHH
Q 005178 440 LNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG-KARRIDDLVRVFGVSIDR------GVKPDDRLCGCLLSV 512 (710)
Q Consensus 440 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~------~~~p~~~~~~~ll~~ 512 (710)
|..+.+.|.+..|.++.+-+...+..-|......+|+.|+ +.++++--+++.+..... ..-|+. .|...+ +
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~-a~S~aL-A 187 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNF-AFSIAL-A 187 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccH-HHHHHH-H
Confidence 4455666777777777776666555445555555566554 566666666666654431 113332 233222 3
Q ss_pred HHhcCCh---------------HHHHHHHHHHHHhCCcH
Q 005178 513 VSLCETS---------------EDVGKVITCLQQANPKL 536 (710)
Q Consensus 513 ~~~~g~~---------------~~a~~~~~~~~~~~p~~ 536 (710)
+...++. ++|.+.+.++....|..
T Consensus 188 ~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 188 YFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred HHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 3334443 67888887777666644
No 445
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=33.41 E-value=2e+02 Score=25.28 Aligned_cols=44 Identities=20% Similarity=0.261 Sum_probs=21.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 005178 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411 (710)
Q Consensus 368 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 411 (710)
++..+.+.++.-.|.++|+.+.+.+...+..|...-++.+...|
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 44444444444555555555555555444444444444444444
No 446
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=32.65 E-value=68 Score=31.64 Aligned_cols=64 Identities=6% Similarity=0.020 Sum_probs=42.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHH
Q 005178 478 LGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNL 542 (710)
Q Consensus 478 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 542 (710)
..+.|+.++|..+|+..+..... +......+........+.-+|.++|-++..+.|.+..++-.
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~-~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvn 189 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPT-NPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVN 189 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCC-CHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhh
Confidence 35788888888888887764322 33344455555555667777888888888888877665543
No 447
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=32.57 E-value=2e+02 Score=28.51 Aligned_cols=53 Identities=17% Similarity=0.144 Sum_probs=32.8
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005178 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496 (710)
Q Consensus 443 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 496 (710)
..+.|+.++|..+|+.+...... +.....-+....-.++++-+|-.+|-+.+.
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~-~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALt 178 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPT-NPQILIEMGQFREMHNEIVEADQCYVKALT 178 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCC-CHHHHHHHhHHHHhhhhhHhhhhhhheeee
Confidence 34678888888888887774322 344555555545555666666666655543
No 448
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=32.33 E-value=2.5e+02 Score=22.16 Aligned_cols=33 Identities=15% Similarity=0.184 Sum_probs=17.1
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 005178 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462 (710)
Q Consensus 430 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 462 (710)
+.|...-..+...+...|++++|++.+-++.+.
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 344455555555555556666555555555543
No 449
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=32.08 E-value=3.7e+02 Score=29.89 Aligned_cols=91 Identities=11% Similarity=0.112 Sum_probs=62.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHH------HHHHHHHHHHhCCCCCCCHHHHHH
Q 005178 367 ALIKIYGKARWAKDALELWERMRENK--WPMDFILYNTLLNMCADIGLVE------EAERLFEDMKLSDYCKPDNYSYTA 438 (710)
Q Consensus 367 ~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~------~A~~~~~~~~~~~~~~~~~~~~~~ 438 (710)
+|+.+|...|++..+.++++.+...+ -+.=...||..|....+.|.++ .|.+++++.. ..-|..||..
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~----ln~d~~t~al 108 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR----LNGDSLTYAL 108 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh----cCCcchHHHH
Confidence 78999999999999999999888653 2223456788888888888754 4555555554 2568888888
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHH
Q 005178 439 MLNIYGSGGNVDNAIELFEEMSE 461 (710)
Q Consensus 439 li~~~~~~g~~~~A~~~~~~m~~ 461 (710)
|+++-..--+-....-++.+++.
T Consensus 109 l~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 109 LCQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHHhhcChHhHHhccHHHHHHHH
Confidence 88766554333444445555444
No 450
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=32.01 E-value=87 Score=31.07 Aligned_cols=35 Identities=29% Similarity=0.285 Sum_probs=23.7
Q ss_pred CCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 005178 290 PDPIA-FSVLGKMFGESGDYDGIRYVLQEMKSLGVQ 324 (710)
Q Consensus 290 ~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 324 (710)
+|..+ |+..|....+.||+++|++++++..+.|+.
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 44443 457777777777777777777777777654
No 451
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=31.93 E-value=2.2e+02 Score=27.66 Aligned_cols=56 Identities=23% Similarity=0.160 Sum_probs=27.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005178 298 LGKMFGESGDYDGIRYVLQEMKS----LG-VQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353 (710)
Q Consensus 298 li~~~~~~g~~~~A~~~~~~m~~----~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 353 (710)
+...|.+.|++++|.++|+.+.. .| ..+...+...+..++.+.|+.+....+--+|
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 44455555555555555555432 12 1223334445555566666666655554443
No 452
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=31.27 E-value=4.4e+02 Score=26.34 Aligned_cols=22 Identities=23% Similarity=0.164 Sum_probs=11.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q 005178 333 LLEAMGKAGKPGLARSLFDEMV 354 (710)
Q Consensus 333 li~~~~~~g~~~~A~~~~~~m~ 354 (710)
.+..+...|++..|++++.+..
T Consensus 133 ~l~~ll~~~dy~~Al~li~~~~ 154 (291)
T PF10475_consen 133 RLQELLEEGDYPGALDLIEECQ 154 (291)
T ss_pred HHHHHHhcCCHHHHHHHHHHHH
Confidence 3444455555555555555443
No 453
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=31.21 E-value=2.6e+02 Score=29.41 Aligned_cols=96 Identities=15% Similarity=0.101 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHH---------------HHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH-
Q 005178 396 DFILYNTLLNMCADIGLVEEAERLFED---------------MKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM- 459 (710)
Q Consensus 396 ~~~~~~~li~~~~~~g~~~~A~~~~~~---------------~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m- 459 (710)
+......++..+....++.+-.+..+. +.. .---.+...|++.++-.|++..|+++++.+
T Consensus 74 ~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~----~LGYFSligLlRvh~LLGDY~~Alk~l~~id 149 (404)
T PF10255_consen 74 NVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYK----MLGYFSLIGLLRVHCLLGDYYQALKVLENID 149 (404)
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHH----HhhHHHHHHHHHHHHhccCHHHHHHHhhccC
Q ss_pred ------HHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005178 460 ------SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSI 495 (710)
Q Consensus 460 ------~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 495 (710)
...-..-.+.+|-.+.-+|...+++.+|+++|...+
T Consensus 150 l~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 150 LNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred cccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
No 454
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=30.58 E-value=5.6e+02 Score=25.58 Aligned_cols=54 Identities=20% Similarity=0.204 Sum_probs=35.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005178 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320 (710)
Q Consensus 261 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 320 (710)
-.++..+.+.++..+....+..+.. ...-...+..+...|+|..|++++.+..+
T Consensus 102 L~Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 102 LEILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3445556666666666666665542 33445566777788999999888887765
No 455
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=30.57 E-value=5.3e+02 Score=25.28 Aligned_cols=120 Identities=10% Similarity=-0.065 Sum_probs=58.8
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHHhCCcHHHHH---HHHHhhcCCcccH
Q 005178 478 LGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSL-CETSEDVGKVITCLQQANPKLVAFL---NLIEDNSTGFENI 553 (710)
Q Consensus 478 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~p~~~~~~---~~L~~~~~~~~~~ 553 (710)
+.+..+-..|+++-+..+..+.. +..+|..--.++.+ ..+..+-.+++.++.+.+|.+..++ ..+........
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lNpA-nYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s-- 129 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLNPA-NYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPS-- 129 (318)
T ss_pred HhccccCHHHHHHHHHHHHhCcc-cchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcc--
Confidence 34555666777777777653321 22233221111111 2234555666677777777776544 12221111101
Q ss_pred HHHHHHHHHhc-cCCCChh-hHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 005178 554 KEEFRNVIKDT-EVDARRP-FCNCLIDICRNRNLNERAHELLYLGTLYGL 601 (710)
Q Consensus 554 ~~~a~~~~~~~-~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 601 (710)
..| .++.+.| ..+.... +|..-.++|...+.++.-..+..++++..+
T Consensus 130 ~rE-Lef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di 178 (318)
T KOG0530|consen 130 FRE-LEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDI 178 (318)
T ss_pred cch-HHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Confidence 011 2222222 2333333 677777777777777776666666655443
No 456
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=30.48 E-value=95 Score=30.79 Aligned_cols=30 Identities=17% Similarity=0.305 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 005178 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDY 428 (710)
Q Consensus 399 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 428 (710)
-|+..|....+.||+++|+.++++.++.|.
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~ 288 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGS 288 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 355777777788888888888888877774
No 457
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=30.14 E-value=4.5e+02 Score=24.35 Aligned_cols=19 Identities=11% Similarity=-0.022 Sum_probs=9.6
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 005178 336 AMGKAGKPGLARSLFDEMV 354 (710)
Q Consensus 336 ~~~~~g~~~~A~~~~~~m~ 354 (710)
.....|++++|.+-++++.
T Consensus 38 ~~~H~~~~eeA~~~l~~a~ 56 (204)
T COG2178 38 FLLHRGDFEEAEKKLKKAS 56 (204)
T ss_pred HHHHhccHHHHHHHHHHHH
Confidence 3344555555555555443
No 458
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=29.95 E-value=2.9e+02 Score=22.78 Aligned_cols=26 Identities=23% Similarity=0.634 Sum_probs=17.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHH
Q 005178 436 YTAMLNIYGSGGNVDNAIELFEEMSE 461 (710)
Q Consensus 436 ~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (710)
|..|+..|...|..++|.+++.+..+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 56666666666666666666666655
No 459
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=29.83 E-value=1.1e+02 Score=17.73 Aligned_cols=23 Identities=22% Similarity=0.186 Sum_probs=12.7
Q ss_pred ChHHHHHHHHHHHHhCCcHHHHH
Q 005178 518 TSEDVGKVITCLQQANPKLVAFL 540 (710)
Q Consensus 518 ~~~~a~~~~~~~~~~~p~~~~~~ 540 (710)
+.+.+..+|+++....|....++
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W 24 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELW 24 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHH
Confidence 34556666666665555544444
No 460
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=29.82 E-value=5.9e+02 Score=25.59 Aligned_cols=88 Identities=17% Similarity=0.091 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHhCCCC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 005178 413 VEEAERLFEDMKLSDYC---KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489 (710)
Q Consensus 413 ~~~A~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 489 (710)
.+.|.+.|+.....+.. ..+......++....+.|+.+.-..+++..... .+...-..++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 56778888887775321 235555666677777777766655565555542 466777778888888888887788
Q ss_pred HHHHHHHCC-CCCCH
Q 005178 490 VFGVSIDRG-VKPDD 503 (710)
Q Consensus 490 ~~~~m~~~~-~~p~~ 503 (710)
+++.....+ +.+..
T Consensus 223 ~l~~~l~~~~v~~~d 237 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQD 237 (324)
T ss_dssp HHHHHHCTSTS-TTT
T ss_pred HHHHHcCCcccccHH
Confidence 888777643 44433
No 461
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=29.06 E-value=8.6e+02 Score=27.30 Aligned_cols=188 Identities=11% Similarity=-0.014 Sum_probs=85.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHH-HHHHHHHHcCCCcCHHHHHHHHHHHH--hcCCHHHHH
Q 005178 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAI-ELFEEMSELGVAINVMGCTCLIQCLG--KARRIDDLV 488 (710)
Q Consensus 412 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~~~~p~~~~~~~li~~~~--~~g~~~~A~ 488 (710)
.-+-|..++..-.+.+...-...+.-.+.-+|+...+ ++.. .+.--|-+...++++..+.++--+.. -.-+-|-+-
T Consensus 449 e~dpalALLsdyv~~~~s~~ri~aIlGLglayaGsq~-e~V~~lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn~dvts 527 (878)
T KOG2005|consen 449 ECDPALALLSDYLQSSSSIHRIGAILGLGLAYAGSQR-EEVLELLSPIMFDTKSPMEVVAFASLSLGMIFVGSCNEDVTS 527 (878)
T ss_pred ccCHHHHHHHHhccCCCceeehHHhhhhHHhhcCCch-HHHHHHHhHHhcCCCCchhHHHHHHhhcceeEEecCChHHHH
Confidence 3455666666666544211222333334444444433 3344 33333444455566777766654433 333456666
Q ss_pred HHHHHHHHCCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHH--HhhcCCcccHHHHHHHHHHh
Q 005178 489 RVFGVSIDRGV---KPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLI--EDNSTGFENIKEEFRNVIKD 563 (710)
Q Consensus 489 ~~~~~m~~~~~---~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L--~~~~~~~~~~~~~a~~~~~~ 563 (710)
.+++.+.+++- .-.-.-|-.|.-+..-.|+-+.+....+.+..+.-......++| +++|+..|+.+.--......
T Consensus 528 ~ilqtlmekse~El~d~~~RFL~LGL~llflgkqe~~d~~~e~~~~i~~~~~~~~~~lv~~caYaGTGnvl~Iq~q~ll~ 607 (878)
T KOG2005|consen 528 SILQTLMEKSETELEDQWFRFLALGLALLFLGKQESVDAVVETIKAIEGPIRKHESILVKSCAYAGTGNVLKIQSQLLLS 607 (878)
T ss_pred HHHHHHHHhhhhhhhchHHHHHHHHHHHHHhcccchHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCceEEechhhhhh
Confidence 66666664432 21122333444444444553444444444444433333333333 34455555433221111222
Q ss_pred ccCCCC--hhh---HHHHHHHHHhCCC---HHHHHHHHHHHHHcC
Q 005178 564 TEVDAR--RPF---CNCLIDICRNRNL---NERAHELLYLGTLYG 600 (710)
Q Consensus 564 ~~~~~~--~~~---~~~l~~~~~~~g~---~~~A~~~~~~~~~~~ 600 (710)
.-.+.+ ... +..|+-++...|+ .+.+.+.|..++.||
T Consensus 608 ~cgE~~~~~e~~~~~avLgiAliAMgeeig~eM~lR~f~h~l~yg 652 (878)
T KOG2005|consen 608 FCGEHDADLESEQELAVLGIALIAMGEEIGSEMVLRHFGHLLHYG 652 (878)
T ss_pred hcCCCccchhhhccchhhhhhhhhhhhhhhhHHHHHHHHHHHHcC
Confidence 211111 111 4455556666665 356677777776665
No 462
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=28.90 E-value=3.6e+02 Score=22.89 Aligned_cols=44 Identities=14% Similarity=0.194 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 005178 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458 (710)
Q Consensus 415 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 458 (710)
.+.++|..|...++...-...|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66677777766665555566666667777777777777777654
No 463
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=28.36 E-value=4.1e+02 Score=29.57 Aligned_cols=90 Identities=13% Similarity=0.140 Sum_probs=59.8
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHH------HHHHHHHHHHHcCCCCCHHHHHHH
Q 005178 192 VTMKSLRFGRQFQLIEQLANEMVSNE--IELDNITYSTIITCAKRCNLFD------EAIEWFERMYKTGLMPDEVTYSAI 263 (710)
Q Consensus 192 ~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~------~A~~~~~~m~~~g~~~~~~~~~~l 263 (710)
+++.+|..+|++..+..+++.+.... -+.=...||..|+...+.|.++ .|.+++++.. +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78999999999999999999988652 2223467888888888888764 3444444443 44578888887
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 005178 264 LDVYAKSGKVEEVLSLYERGV 284 (710)
Q Consensus 264 i~~~~~~g~~~~A~~~~~~~~ 284 (710)
+.+-..--+-.-.+-++.+.+
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHH
Confidence 776544333333334444443
No 464
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=27.81 E-value=3.4e+02 Score=23.77 Aligned_cols=60 Identities=13% Similarity=0.123 Sum_probs=30.6
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 005178 211 NEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG 271 (710)
Q Consensus 211 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 271 (710)
..+.+.|++++.. -..++..+...+..-.|.++|+.+.+.+...+..|....++.+...|
T Consensus 10 ~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 10 ERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3344455544332 23344445555555666666666666655555555444455555444
No 465
>PRK10941 hypothetical protein; Provisional
Probab=27.71 E-value=6e+02 Score=25.05 Aligned_cols=59 Identities=3% Similarity=-0.080 Sum_probs=33.0
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005178 437 TAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496 (710)
Q Consensus 437 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 496 (710)
+.+-.+|.+.++++.|.++.+.+...... +..-+.--.-.|.+.|.+..|..=++..++
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 34445566666666666666666653221 333444444556666666666666665553
No 466
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=27.61 E-value=1.1e+03 Score=28.10 Aligned_cols=247 Identities=9% Similarity=-0.026 Sum_probs=149.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005178 220 LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299 (710)
Q Consensus 220 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 299 (710)
+|...-...+..+.+.+. .++...+..+.+. ++..+-...+.++.+.+........+..++.. +|..+-...+
T Consensus 633 ~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR~~A~ 705 (897)
T PRK13800 633 PDPGVRRTAVAVLTETTP-PGFGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVRAAAL 705 (897)
T ss_pred CCHHHHHHHHHHHhhhcc-hhHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHHHHHH
Confidence 577777777777777765 4455555566543 46555556666665554322223344444442 5666666677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 005178 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAK 379 (710)
Q Consensus 300 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 379 (710)
..+...+.-+ .. .+-.+.+ .+|...-...+.++.+.+..+. +..+.. .++..+-...+.++...+..+
T Consensus 706 ~aL~~~~~~~-~~-~l~~~L~---D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~~~~~ 773 (897)
T PRK13800 706 DVLRALRAGD-AA-LFAAALG---DPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATLGAGG 773 (897)
T ss_pred HHHHhhccCC-HH-HHHHHhc---CCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHhcccc
Confidence 7776543211 22 2333333 3577776777777777655432 222222 456666667777777776544
Q ss_pred H-HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 005178 380 D-ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458 (710)
Q Consensus 380 ~-A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 458 (710)
. +...+..+.. .+|...-...+.++...|....+...+..+.+ .++...-...+.++...+. +++...+..
T Consensus 774 ~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~----d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~ 845 (897)
T PRK13800 774 APAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR----ASAWQVRQGAARALAGAAA-DVAVPALVE 845 (897)
T ss_pred chhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc----CCChHHHHHHHHHHHhccc-cchHHHHHH
Confidence 3 3444555543 24778888889999999887665555555554 3566666777788887776 456666666
Q ss_pred HHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005178 459 MSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496 (710)
Q Consensus 459 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 496 (710)
+.+ .++...-...+.++.+.+.-..+...+..+.+
T Consensus 846 ~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 846 ALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred Hhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 664 36777777777888776434567777777665
No 467
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=26.63 E-value=1.1e+02 Score=29.10 Aligned_cols=55 Identities=20% Similarity=0.271 Sum_probs=37.5
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005178 442 IYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDR 497 (710)
Q Consensus 442 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 497 (710)
+..+.|+.+.|.+++.+..+.-.+ ....|-.+...-.+.|+.+.|.+.+++.++.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~-w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPE-WAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCch-hhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 345667777777777777763222 4566777777777777777777777777663
No 468
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=26.14 E-value=5.4e+02 Score=23.99 Aligned_cols=42 Identities=14% Similarity=0.017 Sum_probs=24.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcccccccccchh
Q 005178 573 CNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSL 615 (710)
Q Consensus 573 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~w~~ 615 (710)
|..|+..-.+....+++.++.+++-+..+.|- |..+.+-|..
T Consensus 142 W~~l~~~~~~~~~~~~~~~l~~ri~Elvl~PP-y~d~~el~~i 183 (199)
T PF04090_consen 142 WILLIQEEDRESELDSYQQLIERIDELVLSPP-YMDDGELWFI 183 (199)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHhcCCC-CCCcHHHHHH
Confidence 44444443333445667788888877776663 4446666653
No 469
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=26.13 E-value=7.2e+02 Score=25.43 Aligned_cols=63 Identities=21% Similarity=0.428 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005178 239 DEAIEWFERMYKTGLMPDE----VTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303 (710)
Q Consensus 239 ~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 303 (710)
+++..+++.+++. -|+. ..|..++......|.++.++.+|++++..|..|-...-.+++..+-
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 4566666666654 3342 4567777777777777788888888877777766555555555543
No 470
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.10 E-value=1.1e+03 Score=27.51 Aligned_cols=49 Identities=10% Similarity=0.134 Sum_probs=28.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005178 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388 (710)
Q Consensus 331 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 388 (710)
.+....+...|+.++...+-.-|. -|..++..+.+.+.+++|++++..-
T Consensus 508 etv~~l~~~~~~~e~ll~fA~l~~---------d~~~vv~~~~q~e~yeeaLevL~~~ 556 (911)
T KOG2034|consen 508 ETVYQLLASHGRQEELLQFANLIK---------DYEFVVSYWIQQENYEEALEVLLNQ 556 (911)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444455566666555444443 2556677777777777777776543
No 471
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=25.76 E-value=6.9e+02 Score=25.10 Aligned_cols=43 Identities=14% Similarity=0.310 Sum_probs=20.1
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005178 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390 (710)
Q Consensus 348 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 390 (710)
++++.|.+.++.|.-.++.-+.-.+.+.=.+.+.+.+|+.+..
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 3444444444455444444444444444444455555554443
No 472
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=25.43 E-value=7.3e+02 Score=25.27 Aligned_cols=88 Identities=19% Similarity=0.323 Sum_probs=60.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHh-----CCCCCCHH-H
Q 005178 226 STIITCAKRCNLFDEAIEWFERMYKT---GLMPDEVTY--SAILDVYAKSGKVEEVLSLYERGVA-----SGWKPDPI-A 294 (710)
Q Consensus 226 ~~li~~~~~~g~~~~A~~~~~~m~~~---g~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~~~~-----~g~~~~~~-~ 294 (710)
..++....+.++.++|+++++++.+. .-.|+.+.| ..+...+...|+..++.+++++..+ .|+++++. .
T Consensus 79 ei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~ 158 (380)
T KOG2908|consen 79 EILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSS 158 (380)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhh
Confidence 34445666677999999999998764 224566655 4566777789999999999998877 57777544 4
Q ss_pred HHHHHHHHH-hcCCHHHHHH
Q 005178 295 FSVLGKMFG-ESGDYDGIRY 313 (710)
Q Consensus 295 ~~~li~~~~-~~g~~~~A~~ 313 (710)
|+.+-.-|. ..|++....+
T Consensus 159 fY~lssqYyk~~~d~a~yYr 178 (380)
T KOG2908|consen 159 FYSLSSQYYKKIGDFASYYR 178 (380)
T ss_pred HHHHHHHHHHHHHhHHHHHH
Confidence 566655554 4566655433
No 473
>PHA03100 ankyrin repeat protein; Provisional
Probab=25.27 E-value=5.3e+02 Score=27.78 Aligned_cols=10 Identities=10% Similarity=0.411 Sum_probs=4.4
Q ss_pred HHHHCCCCCC
Q 005178 212 EMVSNEIELD 221 (710)
Q Consensus 212 ~m~~~g~~p~ 221 (710)
.+++.|..++
T Consensus 53 ~Ll~~g~~~~ 62 (480)
T PHA03100 53 ILLDNGADIN 62 (480)
T ss_pred HHHHcCCCCC
Confidence 3334454444
No 474
>KOG4121 consensus Nuclear pore complex, Nup133 component (sc Nup133) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.87 E-value=4.2e+02 Score=31.11 Aligned_cols=20 Identities=15% Similarity=0.235 Sum_probs=10.6
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q 005178 475 IQCLGKARRIDDLVRVFGVS 494 (710)
Q Consensus 475 i~~~~~~g~~~~A~~~~~~m 494 (710)
++.+++.|+++.|+++-++.
T Consensus 779 lq~L~~vg~~e~Ai~iAEKY 798 (1128)
T KOG4121|consen 779 LQVLCKVGQYEQAIQIAEKY 798 (1128)
T ss_pred HHHHHhcchHHHHHHHHHHh
Confidence 34445555555555555544
No 475
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=24.71 E-value=8e+02 Score=26.85 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=17.5
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHH
Q 005178 269 KSGKVEEVLSLYERGVASGWKPDPI 293 (710)
Q Consensus 269 ~~g~~~~A~~~~~~~~~~g~~~~~~ 293 (710)
-.++..+++..++++.+.|..+...
T Consensus 257 ~~~d~~~~~~~~~~l~~~G~~~~~~ 281 (515)
T COG2812 257 LKGDAKEALRLINELIEEGKDPEAF 281 (515)
T ss_pred HccCHHHHHHHHHHHHHhCcCHHHH
Confidence 3577788888888888877555433
No 476
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=24.44 E-value=8.4e+02 Score=25.59 Aligned_cols=26 Identities=23% Similarity=0.461 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005178 259 TYSAILDVYAKSGKVEEVLSLYERGV 284 (710)
Q Consensus 259 ~~~~li~~~~~~g~~~~A~~~~~~~~ 284 (710)
.+.-+.+-|..+|+++.|++.|.+..
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~R 177 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRAR 177 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhh
Confidence 34444455555555555555555533
No 477
>PRK02260 S-ribosylhomocysteinase; Provisional
Probab=24.43 E-value=1.6e+02 Score=26.20 Aligned_cols=54 Identities=11% Similarity=0.058 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCeeEEEeccCcccchhhHHHHHHHHhhhcC
Q 005178 624 AAQTALEEWMWTLAKIVLREEVLPQLFLAETGTGTHKFSQGLATAFASHVNKLA 677 (710)
Q Consensus 624 ~~~~Al~~~~~~~~~~~~~~~~~p~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~ 677 (710)
..++.+++|.+.++.+.......|+..-+.||+..+--..+.+......|.+..
T Consensus 95 ~~~~i~~l~~~~l~~i~~~~~eVPga~~~~CGny~~hsL~~Ak~~a~~~L~~~~ 148 (158)
T PRK02260 95 DEEDVADALKATLEDVLDDQEEVPGANEYQCGNYKDHSLEGAKEIARKILDQGI 148 (158)
T ss_pred CHHHHHHHHHHHHHHHHhhcCCCCCCChhcCCChhhCCHHHHHHHHHHHHHhhc
Confidence 567888888888888865557899999999999988666666677777775543
No 478
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.31 E-value=2.1e+02 Score=32.91 Aligned_cols=48 Identities=6% Similarity=-0.053 Sum_probs=34.4
Q ss_pred HHHHHHhccCCCChh--hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCc
Q 005178 557 FRNVIKDTEVDARRP--FCNCLIDICRNRNLNERAHELLYLGTLYGLYPG 604 (710)
Q Consensus 557 a~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 604 (710)
...||...+.+|-.. +..+-+.++.|++++..|..+-.+.++.+-.|.
T Consensus 1069 lAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~ 1118 (1202)
T KOG0292|consen 1069 LAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPP 1118 (1202)
T ss_pred HHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCh
Confidence 445666677777544 567788999999999999877777666554443
No 479
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=24.12 E-value=1.2e+03 Score=27.44 Aligned_cols=163 Identities=11% Similarity=0.027 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHH----HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005178 344 GLARSLFDEMVESGLTPDEKTLTALIKI----YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419 (710)
Q Consensus 344 ~~A~~~~~~m~~~g~~p~~~~~~~li~~----~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 419 (710)
+++.++|..+.+.--.--......+-.. =..........++++....--...|.......+.. +..-...|..+
T Consensus 1092 e~~~k~~~~l~s~ypd~lpll~~~l~kl~~~sD~~kE~~~ki~eIl~~A~~Vi~~~D~eaL~~y~~~--k~D~r~da~kl 1169 (1304)
T KOG1114|consen 1092 EEAEKIYNYLKSSYPDYLPLLEVRLAKLMQKSDAVKETNKKIEEILSAADSVIQEIDTEALARYYAL--KEDTRPDAVKL 1169 (1304)
T ss_pred HHHHHHHHHHHHhCcccchHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhc--ccCCcchHHHH
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHhCCC----------------------HHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 005178 420 FEDMKLSDYCKPDNYSYTAMLNIYGSGGN----------------------VDNAIELFEEMSELGVAINVMGCTCLIQC 477 (710)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------------------~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 477 (710)
-.+|.+.. ..+|+++++.|. .+.-.+.|.++.+.--..|..++..-..-
T Consensus 1170 k~~me~qk---------~tli~AL~kKg~a~ak~e~l~g~~e~daeee~s~ld~~~e~y~el~kw~d~~dsK~~~~a~~h 1240 (1304)
T KOG1114|consen 1170 KKKMEKQK---------DTLIDALVKKGEAFAKYEALKGHKEQDAEEELSKLDSYNENYQELLKWLDASDSKVWQIAKKH 1240 (1304)
T ss_pred HHHHHHHH---------HHHHHHHHHhhhHHhhhhhhcccccccchhhhhhhhhHHHHHHHHHHHhhcCCchheehhHHH
Q ss_pred HHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcC
Q 005178 478 LGKARRIDDLVRVFGVSI-DRGVKPDDRLCGCLLSVVSLCE 517 (710)
Q Consensus 478 ~~~~g~~~~A~~~~~~m~-~~~~~p~~~~~~~ll~~~~~~g 517 (710)
+..+|++-.|++++.+++ +.|-.++...|..++..+...|
T Consensus 1241 a~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lg 1281 (1304)
T KOG1114|consen 1241 AKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLG 1281 (1304)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhC
No 480
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=23.84 E-value=1.1e+03 Score=26.91 Aligned_cols=99 Identities=13% Similarity=0.037 Sum_probs=55.1
Q ss_pred HHHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 005178 378 AKDALELWERM-RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELF 456 (710)
Q Consensus 378 ~~~A~~~~~~m-~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 456 (710)
.++....+..+ ...|+..+......++... .|++..++.+++++...+. |.+. .+..
T Consensus 180 ~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~------------------g~It--~e~V 237 (709)
T PRK08691 180 AQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGS------------------GKVA--ENDV 237 (709)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcC------------------CCcC--HHHH
Confidence 34444444443 3456666766666666543 5888888888877654321 1111 1111
Q ss_pred HHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 005178 457 EEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502 (710)
Q Consensus 457 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 502 (710)
..|.. . .+......|+.++.+ ++...++.+++++...|+.+.
T Consensus 238 ~~lLG--~-~d~~~If~LldAL~~-~d~~~al~~l~~L~~~G~d~~ 279 (709)
T PRK08691 238 RQMIG--A-VDKQYLYELLTGIIN-QDGAALLAKAQEMAACAVGFD 279 (709)
T ss_pred HHHHc--c-cCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCHH
Confidence 11211 1 233344455555544 888888889988888887644
No 481
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=23.64 E-value=4.1e+02 Score=26.56 Aligned_cols=57 Identities=16% Similarity=0.270 Sum_probs=36.7
Q ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005178 453 IELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVS 514 (710)
Q Consensus 453 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 514 (710)
.++|+.|...++.|...+|.-+.-.+.+.=.+.+.+.+|+.+.. |..-|..|+..|+
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCc 319 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICC 319 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHH
Confidence 35666677777777777776666666777777777777777764 2222555555554
No 482
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=23.57 E-value=9e+02 Score=25.63 Aligned_cols=181 Identities=9% Similarity=0.022 Sum_probs=81.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005178 290 PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369 (710)
Q Consensus 290 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 369 (710)
++..+....+.++...+..+-...+...+ + ..+.......+.++...+. .+...+....+ .++..+-..-+
T Consensus 98 ~~~~vr~aaa~ALg~i~~~~a~~~L~~~L-~---~~~p~vR~aal~al~~r~~--~~~~~L~~~L~---d~d~~Vra~A~ 168 (410)
T TIGR02270 98 GPEGLCAGIQAALGWLGGRQAEPWLEPLL-A---ASEPPGRAIGLAALGAHRH--DPGPALEAALT---HEDALVRAAAL 168 (410)
T ss_pred CCHHHHHHHHHHHhcCCchHHHHHHHHHh-c---CCChHHHHHHHHHHHhhcc--ChHHHHHHHhc---CCCHHHHHHHH
Confidence 44445566666666655544443333333 2 1243444444455544331 12233333332 34444455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCH
Q 005178 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNV 449 (710)
Q Consensus 370 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 449 (710)
.+++..+..+ +...+..+.. ..|..+-..-+.+....|. ++|...+..... .++....-.+.......|.
T Consensus 169 raLG~l~~~~-a~~~L~~al~---d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~----~~g~~~~~~l~~~lal~~~- 238 (410)
T TIGR02270 169 RALGELPRRL-SESTLRLYLR---DSDPEVRFAALEAGLLAGS-RLAWGVCRRFQV----LEGGPHRQRLLVLLAVAGG- 238 (410)
T ss_pred HHHHhhcccc-chHHHHHHHc---CCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHh----ccCccHHHHHHHHHHhCCc-
Confidence 5555555432 2222333322 2355555666666666666 555555554222 1222222222222222222
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005178 450 DNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVS 494 (710)
Q Consensus 450 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 494 (710)
+++...+..+.+. ..+-...+.++.+.|+.+.+--+.+.|
T Consensus 239 ~~a~~~L~~ll~d-----~~vr~~a~~AlG~lg~p~av~~L~~~l 278 (410)
T TIGR02270 239 PDAQAWLRELLQA-----AATRREALRAVGLVGDVEAAPWCLEAM 278 (410)
T ss_pred hhHHHHHHHHhcC-----hhhHHHHHHHHHHcCCcchHHHHHHHh
Confidence 3555555555442 224455566666666666544444443
No 483
>PRK09857 putative transposase; Provisional
Probab=23.47 E-value=5.7e+02 Score=25.61 Aligned_cols=64 Identities=16% Similarity=0.190 Sum_probs=30.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 005178 332 TLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMD 396 (710)
Q Consensus 332 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 396 (710)
.++....+.++.++..++++.+.+. .+.......++..-+.+.|.-++++++..+|...|+..+
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3443334445555555555555443 122222333344444444544555566666666555433
No 484
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=23.42 E-value=4.7e+02 Score=22.29 Aligned_cols=42 Identities=7% Similarity=0.111 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHH
Q 005178 486 DLVRVFGVSIDRGVKPDDR-LCGCLLSVVSLCETSEDVGKVIT 527 (710)
Q Consensus 486 ~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~ 527 (710)
+..++|..|...||.-... .|......+...|++.+|.++|+
T Consensus 81 dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 81 EPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3555666666666554433 44455556666666666666654
No 485
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=23.33 E-value=1.9e+02 Score=32.22 Aligned_cols=63 Identities=19% Similarity=0.108 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005178 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVE 355 (710)
Q Consensus 291 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 355 (710)
+...-.-++..|.+.|..+.|..+.+.+-..-. ...-|..-+..+.++|+...+..+-+.+.+
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~ 466 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLLE 466 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-----------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334445556666666666666666665543211 123455555566666666666555555543
No 486
>PF13934 ELYS: Nuclear pore complex assembly
Probab=23.31 E-value=6.6e+02 Score=23.98 Aligned_cols=20 Identities=15% Similarity=0.142 Sum_probs=11.5
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 005178 474 LIQCLGKARRIDDLVRVFGV 493 (710)
Q Consensus 474 li~~~~~~g~~~~A~~~~~~ 493 (710)
++.++...|+.+.|+.+++.
T Consensus 114 Il~~L~~~~~~~lAL~y~~~ 133 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRA 133 (226)
T ss_pred HHHHHHHCCChhHHHHHHHh
Confidence 45555555666666666654
No 487
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=23.31 E-value=4.3e+02 Score=21.78 Aligned_cols=26 Identities=15% Similarity=0.362 Sum_probs=13.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005178 225 YSTIITCAKRCNLFDEAIEWFERMYK 250 (710)
Q Consensus 225 ~~~li~~~~~~g~~~~A~~~~~~m~~ 250 (710)
|..++..|...|..++|++++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 45555555555555555555555444
No 488
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=23.20 E-value=9e+02 Score=25.52 Aligned_cols=90 Identities=17% Similarity=0.117 Sum_probs=52.3
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHH---H-----HHhCCCHHHHHHHHHHH
Q 005178 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN---I-----YGSGGNVDNAIELFEEM 459 (710)
Q Consensus 388 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~---~-----~~~~g~~~~A~~~~~~m 459 (710)
+..+.+.||..+.|.+...++..-..+-...+|+-..+.+ .|-.+-+.++|- + -.+...-++++++++.|
T Consensus 174 LdtkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa--DPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenm 251 (669)
T KOG3636|consen 174 LDTKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA--DPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENM 251 (669)
T ss_pred hhccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--CceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcC
Confidence 3445677788887777777777777777777777777655 344443433332 1 12344566777777777
Q ss_pred HHcCCCcCHHHHHHHHHHHH
Q 005178 460 SELGVAINVMGCTCLIQCLG 479 (710)
Q Consensus 460 ~~~~~~p~~~~~~~li~~~~ 479 (710)
...----|+.-+-+|..-|+
T Consensus 252 p~~L~~eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 252 PAQLSVEDVPDFFSLAQYYS 271 (669)
T ss_pred chhcccccchhHHHHHHHHh
Confidence 54311124445555555444
No 489
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=23.13 E-value=2.9e+02 Score=22.86 Aligned_cols=25 Identities=12% Similarity=0.034 Sum_probs=18.8
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCC
Q 005178 193 TMKSLRFGRQFQLIEQLANEMVSNE 217 (710)
Q Consensus 193 li~~~~~~g~~~~A~~l~~~m~~~g 217 (710)
+|+.+.+|...++|+++.+.|.++|
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 4566677777888888888887776
No 490
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=22.86 E-value=8.1e+02 Score=26.37 Aligned_cols=174 Identities=14% Similarity=0.105 Sum_probs=0.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH----HHHHHHHHHhcC-CHH
Q 005178 235 CNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIA----FSVLGKMFGESG-DYD 309 (710)
Q Consensus 235 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~----~~~li~~~~~~g-~~~ 309 (710)
..++++|+++.++..+.+-. ..-|-...|.++|.++.+.|+.||..+ ....+.+|+=.| .++
T Consensus 207 ~~~ldeal~~~~~a~~~~~~-------------~SIg~~GNaadv~~~l~~r~i~pDlvtDQTSaHdp~~GY~P~g~t~e 273 (545)
T TIGR01228 207 TDSLDEALARAEEAKAEGKP-------------ISIGLLGNAAEVLPELLKRGVVPDVVTDQTSAHDPLNGYIPEGYTVE 273 (545)
T ss_pred cCCHHHHHHHHHHHHHcCCc-------------eEEEeeccHHHHHHHHHHcCCCCCCcCCCCcccCcccccCCCCCCHH
Q ss_pred HHHHH-------HHHHHHCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--------
Q 005178 310 GIRYV-------LQEMKSLGVQPNLVVYNTLLEAMGKAGK--PGLARSLFDEMVESGLTPDEKTLTALIKIY-------- 372 (710)
Q Consensus 310 ~A~~~-------~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~li~~~-------- 372 (710)
++.++ |.++.+. +....-..|..+.+.|- +|-.-.+..+..+.|+. +.+.|-..+..|
T Consensus 274 e~~~lr~~dp~~~~~~~~~----Sm~rhv~Am~~~~~~Ga~~fDYGN~~r~~a~~aG~~-~aF~~PgfV~~~irplF~~G 348 (545)
T TIGR01228 274 DADKLRQEEPEAYVKAAKQ----SMAKHVRAMLAFQKQGSVTFDYGNNIRQVAKEEGVE-DAFDFPGFVPAYIRPLFCRG 348 (545)
T ss_pred HHHHHHHhCHHHHHHHHHH----HHHHHHHHHHHHHHCCCeeeeccHHHHHHHHHcCcc-ccCCCCCchhhhcchhhhCc
Q ss_pred -------HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--------------HHHcCCHHHHHHHHHHHHhCC
Q 005178 373 -------GKARWAKDALELWERMRENKWPMDFILYNTLLNM--------------CADIGLVEEAERLFEDMKLSD 427 (710)
Q Consensus 373 -------~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~--------------~~~~g~~~~A~~~~~~~~~~~ 427 (710)
+-.|+.++-.+.=+.+.+. +++|...++.+=.+ |...|.-.++-..|++|.+.|
T Consensus 349 ~GPFRWvaLSGdpeDi~~TD~~~~e~-~~~~~~~~~WI~~A~e~~~fqGlpARI~wlg~~eR~~~~l~fNe~V~~G 423 (545)
T TIGR01228 349 KGPFRWVALSGDPADIYRTDAAVKEL-FPEDAHLHRWIDMAQERVSFQGLPARICWLGYGERAKLGLAINEMVRSG 423 (545)
T ss_pred CCCceeEecCCCHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHhcCcccCCchhhhhcCccHHHHHHHHHHHHHHcC
No 491
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=22.84 E-value=3.5e+02 Score=28.59 Aligned_cols=39 Identities=13% Similarity=0.061 Sum_probs=21.9
Q ss_pred CCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHHhCCc
Q 005178 497 RGVKPDDR--LCGCLLSVVSLCETSEDVGKVITCLQQANPK 535 (710)
Q Consensus 497 ~~~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 535 (710)
.+++|.+. +...-|..+.+.+++..|..+-+++.++.|.
T Consensus 292 c~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~ 332 (422)
T PF06957_consen 292 CKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPS 332 (422)
T ss_dssp S---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--S
T ss_pred CCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCC
Confidence 34444433 3444556666778888887777777777664
No 492
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=22.57 E-value=3.3e+02 Score=21.44 Aligned_cols=55 Identities=11% Similarity=0.124 Sum_probs=36.5
Q ss_pred HHHHHHhhcCCcccHHHHHHHHHHhcc-CCCChhhHHHHHHHHHhCCCHHHHHHHHH
Q 005178 539 FLNLIEDNSTGFENIKEEFRNVIKDTE-VDARRPFCNCLIDICRNRNLNERAHELLY 594 (710)
Q Consensus 539 ~~~~L~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 594 (710)
.++.+..-+...| ..+.+.+++.... .+....+...|+.++..++....|+.++.
T Consensus 34 ~ID~I~~~y~r~g-L~EqvyQ~L~~W~~~eg~~Atv~~Lv~AL~~c~l~~lAe~l~~ 89 (90)
T cd08780 34 AIDNLAYEYDREG-LYEQAYQLLRRFIQSEGKKATLQRLVQALEENGLTSLAEDLLG 89 (90)
T ss_pred HHHHHHhhccccc-HHHHHHHHHHHHHHhccccchHHHHHHHHHHccchHHHHHHhc
Confidence 3444544444333 7777777777643 24444678889999999998888887763
No 493
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=22.47 E-value=1.5e+02 Score=21.79 Aligned_cols=59 Identities=10% Similarity=0.171 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005178 253 LMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIR 312 (710)
Q Consensus 253 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 312 (710)
+.|....++.++..+++..-.++++..++++...| ..+..+|.--++.+++..-+..|.
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaReQF~~Ral 62 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLAREQFLKRAL 62 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHH
No 494
>PRK13342 recombination factor protein RarA; Reviewed
Probab=22.23 E-value=9.5e+02 Score=25.41 Aligned_cols=35 Identities=23% Similarity=0.089 Sum_probs=22.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 005178 375 ARWAKDALELWERMRENKWPMDFILYNTLLNMCAD 409 (710)
Q Consensus 375 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 409 (710)
..+.+.|+..+..|.+.|..|....-..++.++-.
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ed 277 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIASED 277 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 46777888888888877776665444444444333
No 495
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=22.13 E-value=1.2e+03 Score=26.75 Aligned_cols=31 Identities=13% Similarity=0.265 Sum_probs=14.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005178 252 GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284 (710)
Q Consensus 252 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 284 (710)
|+..+......++... .|+...++.+++++.
T Consensus 195 gi~id~eAL~~Ia~~A--~GslRdAlnLLDqai 225 (709)
T PRK08691 195 KIAYEPPALQLLGRAA--AGSMRDALSLLDQAI 225 (709)
T ss_pred CCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHH
Confidence 4444444444444332 355555555555444
No 496
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=22.11 E-value=81 Score=30.10 Aligned_cols=130 Identities=9% Similarity=0.006 Sum_probs=0.0
Q ss_pred HHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Q 005178 455 LFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANP 534 (710)
Q Consensus 455 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 534 (710)
+.+..++.|-.-.-.++..++--+...|+++.|+++.+.+++.|.. .+.-|..=..++....-.+-|..-+..-...+|
T Consensus 70 ~V~g~L~~g~~~qd~Vl~~~mvW~~D~Gd~~~AL~ia~yAI~~~l~-~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~ 148 (230)
T PHA02537 70 WVEGVLAAGAGYQDDVLMTVMVWRFDIGDFDGALEIAEYALEHGLT-MPDQFRRTLANFVAEEVANAALKAASAGESVEP 148 (230)
T ss_pred HHHHHHHcCCCCCCCeeeEeeeeeeeccCHHHHHHHHHHHHHcCCC-CCccccCCchHHHHHHHHHHHHHHHHcCCCCCh
Q ss_pred cHHHHHHHHHhhcCCcccHHHHHHHHHHhccCCCChhhHHHHHHHH---------HhCCCHHHHHHHHHHHHHcC
Q 005178 535 KLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDIC---------RNRNLNERAHELLYLGTLYG 600 (710)
Q Consensus 535 ~~~~~~~~L~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~---------~~~g~~~~A~~~~~~~~~~~ 600 (710)
.....+..+..... |+.+...-.|..++..+ ...++...|..+++++...+
T Consensus 149 ~~~~~~~~l~~~~d---------------mpd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~ 208 (230)
T PHA02537 149 YFLRVFLDLTTEWD---------------MPDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLN 208 (230)
T ss_pred HHHHHHHHHHhcCC---------------CChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhC
No 497
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=21.52 E-value=9.8e+02 Score=26.21 Aligned_cols=122 Identities=17% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 005178 228 IITCAKRCNLFDEAIEWFERMYKT--GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305 (710)
Q Consensus 228 li~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 305 (710)
++.-|.+.+++++|+.++..|.-. |-. --...+.+++.+.+..--.+.+..++.++..=..|....-.....-|..
T Consensus 414 L~~~yl~~~qi~eAi~lL~smnW~~~g~~-C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey~d- 491 (545)
T PF11768_consen 414 LISQYLRCDQIEEAINLLLSMNWNTMGEQ-CFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEYRD- 491 (545)
T ss_pred HHHHHHhcCCHHHHHHHHHhCCccccHHH-HHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHHHH-
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 005178 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357 (710)
Q Consensus 306 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 357 (710)
.=.+-|++.|..|...+ .|..-.......|+.|--.+++......|
T Consensus 492 ~V~~~aRRfFhhLLR~~------rfekAFlLAvdi~~~DLFmdlh~~A~~~g 537 (545)
T PF11768_consen 492 PVSDLARRFFHHLLRYQ------RFEKAFLLAVDIGDRDLFMDLHYLAKDKG 537 (545)
T ss_pred HHHHHHHHHHHHHHHhh------HHHHHHHHHHhccchHHHHHHHHHHHhcc
No 498
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=21.35 E-value=7.4e+02 Score=23.83 Aligned_cols=44 Identities=20% Similarity=0.116 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhccCCCChhhH-----HHHHHHHHhCCCHHHHHHHHHHHH
Q 005178 553 IKEEFRNVIKDTEVDARRPFC-----NCLIDICRNRNLNERAHELLYLGT 597 (710)
Q Consensus 553 ~~~~a~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~ 597 (710)
..++|.++.+.. ..|..+++ |.-+-.|-..|+.++|.++-+.+.
T Consensus 148 aY~~A~~~a~~~-L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~af 196 (236)
T PF00244_consen 148 AYEEALEIAKKE-LPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAF 196 (236)
T ss_dssp HHHHHHHHHHHH-SCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHH
T ss_pred hhhhHHHHHhcc-cCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 344555555543 34555533 222334567899999987777654
No 499
>PRK09462 fur ferric uptake regulator; Provisional
Probab=21.33 E-value=4.1e+02 Score=23.24 Aligned_cols=64 Identities=17% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 005178 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411 (710)
Q Consensus 348 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 411 (710)
.+-+.+.+.|+..+..-...+-......+..-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 3 ~~~~~l~~~glr~T~qR~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 3 DNNTALKKAGLKVTLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred hHHHHHHHcCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
No 500
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=21.31 E-value=1.3e+03 Score=26.79 Aligned_cols=148 Identities=11% Similarity=0.086 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------------CCCCHHHHHHHHHHHHH
Q 005178 204 QLIEQLANEMVSN-EIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTG-------------LMPDEVTYSAILDVYAK 269 (710)
Q Consensus 204 ~~A~~l~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-------------~~~~~~~~~~li~~~~~ 269 (710)
++..+.++.+.+. |+..+......++... .|++.+|+.++++....+ -..+...+..++..+..
T Consensus 181 eeIv~~L~~Il~~EgI~id~eAL~lIA~~A--~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL~~ 258 (830)
T PRK07003 181 GHIVSHLERILGEERIAFEPQALRLLARAA--QGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDALAA 258 (830)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHHHc
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----------HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 005178 270 SGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF----------GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339 (710)
Q Consensus 270 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~----------~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 339 (710)
++..+++.+++++...|+......-..+-..+ .....+.+..++..........--...|..++.+...
T Consensus 259 -~d~~~~l~~~~~l~~~g~~~~~~l~dLl~~l~~~~~~q~~~~~~~~~~~e~~~~~~~a~~~s~~~l~~~~qi~l~g~~e 337 (830)
T PRK07003 259 -GDGPEILAVADEMALRSLSFSTALQDLASLLHRIAWAQFAPASVLDEWPEAADLRRFAELLSPEQVQLFYQIATVGRGE 337 (830)
T ss_pred -CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCccccccccchHHHHHHHHHhCCHHHHHHHHHHHHhHHHH
Q ss_pred cCCHHHHHHHHHHHH
Q 005178 340 AGKPGLARSLFDEMV 354 (710)
Q Consensus 340 ~g~~~~A~~~~~~m~ 354 (710)
.+.-..-.-.|+.++
T Consensus 338 l~~ap~~~~~~Em~l 352 (830)
T PRK07003 338 LGLAPDEYAGFTMTL 352 (830)
T ss_pred hhcCCCHHHHHHHHH
Done!