Query 005178
Match_columns 710
No_of_seqs 795 out of 4240
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 17:46:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005178.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005178hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 5.7E-36 2E-40 335.4 39.1 433 185-636 82-577 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.9E-34 6.6E-39 323.0 42.7 426 159-599 92-579 (597)
3 4g26_A Pentatricopeptide repea 100.0 2.3E-29 8E-34 270.7 25.9 187 188-374 27-222 (501)
4 1w3b_A UDP-N-acetylglucosamine 100.0 2.2E-26 7.5E-31 242.8 46.7 375 160-546 8-382 (388)
5 4g26_A Pentatricopeptide repea 100.0 4.3E-29 1.5E-33 268.6 26.1 206 204-409 7-222 (501)
6 1w3b_A UDP-N-acetylglucosamine 100.0 4.7E-26 1.6E-30 240.3 46.2 381 193-584 5-387 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 3E-22 1E-26 215.5 40.6 327 184-544 23-370 (450)
8 2gw1_A Mitochondrial precursor 99.9 6.4E-23 2.2E-27 224.7 35.1 403 187-600 6-479 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 1.3E-21 4.4E-26 210.5 42.4 316 160-510 35-370 (450)
10 2gw1_A Mitochondrial precursor 99.9 4.8E-22 1.6E-26 217.7 38.5 372 160-543 15-489 (514)
11 3fp2_A TPR repeat-containing p 99.9 3E-20 1E-24 204.7 41.8 362 160-538 34-497 (537)
12 3fp2_A TPR repeat-containing p 99.9 3.9E-21 1.3E-25 211.8 32.2 400 186-600 24-492 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 6.5E-19 2.2E-23 182.7 42.2 328 186-546 2-349 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 4E-18 1.4E-22 176.8 42.3 320 159-512 11-349 (359)
15 3hym_B Cell division cycle pro 99.8 2.1E-18 7.2E-23 176.7 31.0 285 256-547 21-314 (330)
16 2xm6_A Protein corresponding t 99.8 1.4E-15 4.7E-20 165.3 52.2 352 164-547 56-450 (490)
17 2ooe_A Cleavage stimulation fa 99.8 1.6E-16 5.5E-21 174.5 45.1 406 184-599 10-492 (530)
18 2xm6_A Protein corresponding t 99.8 1E-15 3.5E-20 166.3 49.9 353 186-601 38-434 (490)
19 3hym_B Cell division cycle pro 99.8 1.5E-17 5.3E-22 170.2 31.1 292 289-587 19-322 (330)
20 1fch_A Peroxisomal targeting s 99.8 9.1E-18 3.1E-22 175.1 26.6 289 235-529 38-356 (368)
21 1fch_A Peroxisomal targeting s 99.8 1.9E-17 6.5E-22 172.6 25.6 289 200-494 38-356 (368)
22 4g1t_A Interferon-induced prot 99.8 5.4E-16 1.9E-20 167.6 36.7 384 184-600 48-460 (472)
23 2ooe_A Cleavage stimulation fa 99.8 3.5E-15 1.2E-19 163.8 43.2 364 163-535 24-457 (530)
24 4eqf_A PEX5-related protein; a 99.8 9.5E-18 3.2E-22 174.9 21.4 265 257-528 65-352 (365)
25 1b89_A Protein (clathrin heavy 99.8 6.7E-18 2.3E-22 172.9 18.9 289 157-491 9-305 (449)
26 1xi4_A Clathrin heavy chain; a 99.8 1.4E-14 4.8E-19 164.7 45.8 372 161-590 995-1375(1630)
27 1b89_A Protein (clathrin heavy 99.8 1.2E-17 4.2E-22 171.0 18.7 347 198-595 14-368 (449)
28 4eqf_A PEX5-related protein; a 99.8 1.1E-16 3.6E-21 166.9 26.4 265 224-493 67-352 (365)
29 3cv0_A Peroxisome targeting si 99.8 1.7E-16 6E-21 162.1 25.9 278 225-531 24-314 (327)
30 3mkr_A Coatomer subunit epsilo 99.8 6.6E-16 2.3E-20 154.8 29.5 262 267-544 9-276 (291)
31 3cv0_A Peroxisome targeting si 99.7 6.4E-16 2.2E-20 157.9 28.5 280 186-494 20-312 (327)
32 4g1t_A Interferon-induced prot 99.7 4.2E-15 1.4E-19 160.6 36.0 372 157-562 57-454 (472)
33 3mkr_A Coatomer subunit epsilo 99.7 7.3E-16 2.5E-20 154.5 27.7 250 232-496 9-263 (291)
34 3spa_A Mtrpol, DNA-directed RN 99.7 4.8E-18 1.7E-22 187.0 8.6 115 293-407 128-246 (1134)
35 3spa_A Mtrpol, DNA-directed RN 99.7 2.5E-17 8.7E-22 181.4 11.3 117 223-339 128-248 (1134)
36 3uq3_A Heat shock protein STI1 99.7 8.6E-15 2.9E-19 143.8 27.2 238 294-546 7-256 (258)
37 1xi4_A Clathrin heavy chain; a 99.7 6.9E-13 2.4E-17 151.0 44.7 329 142-525 1041-1377(1630)
38 3uq3_A Heat shock protein STI1 99.6 7.6E-14 2.6E-18 137.0 26.8 224 258-496 6-235 (258)
39 3u4t_A TPR repeat-containing p 99.6 8.2E-14 2.8E-18 138.2 26.4 249 294-547 5-265 (272)
40 2pl2_A Hypothetical conserved 99.6 1.1E-13 3.7E-18 132.3 23.1 196 328-530 6-212 (217)
41 2ho1_A Type 4 fimbrial biogene 99.6 6.5E-13 2.2E-17 130.0 28.2 212 328-543 38-249 (252)
42 2pl2_A Hypothetical conserved 99.6 1.4E-13 4.9E-18 131.5 22.6 185 359-549 2-197 (217)
43 1ouv_A Conserved hypothetical 99.6 5.7E-12 2E-16 125.0 35.1 229 291-538 5-257 (273)
44 2vq2_A PILW, putative fimbrial 99.6 8.2E-13 2.8E-17 126.5 28.0 214 327-543 8-222 (225)
45 2q7f_A YRRB protein; TPR, prot 99.6 1.6E-13 5.5E-18 133.4 23.2 215 326-546 22-236 (243)
46 2h6f_A Protein farnesyltransfe 99.6 2.9E-13 9.8E-18 140.3 25.7 246 291-545 96-361 (382)
47 3e4b_A ALGK; tetratricopeptide 99.6 1.5E-13 5E-18 147.1 24.1 341 231-601 12-389 (452)
48 2h6f_A Protein farnesyltransfe 99.6 3.3E-13 1.1E-17 139.9 25.8 239 256-504 96-353 (382)
49 1ouv_A Conserved hypothetical 99.6 7.8E-12 2.7E-16 124.1 33.6 224 256-498 5-252 (273)
50 3u4t_A TPR repeat-containing p 99.6 9.4E-13 3.2E-17 130.5 25.8 234 259-497 5-250 (272)
51 2ho1_A Type 4 fimbrial biogene 99.5 3E-12 1E-16 125.3 27.1 197 260-461 40-237 (252)
52 2vq2_A PILW, putative fimbrial 99.5 4.7E-12 1.6E-16 121.1 27.8 201 292-496 8-210 (225)
53 1xnf_A Lipoprotein NLPI; TPR, 99.5 4.3E-13 1.5E-17 133.1 20.8 219 271-496 19-243 (275)
54 4e6h_A MRNA 3'-END-processing 99.5 1.2E-10 4E-15 128.9 41.5 411 184-600 63-571 (679)
55 1xnf_A Lipoprotein NLPI; TPR, 99.5 5.3E-13 1.8E-17 132.4 20.9 185 199-389 17-204 (275)
56 2q7f_A YRRB protein; TPR, prot 99.5 9.9E-13 3.4E-17 127.7 22.0 129 364-496 93-221 (243)
57 3e4b_A ALGK; tetratricopeptide 99.5 2.5E-12 8.5E-17 137.5 26.3 337 162-533 14-388 (452)
58 3sf4_A G-protein-signaling mod 99.5 2.6E-13 8.8E-18 143.1 17.3 279 222-532 9-336 (406)
59 4a1s_A PINS, partner of inscut 99.5 4.7E-13 1.6E-17 141.6 18.4 281 225-537 51-377 (411)
60 3sf4_A G-protein-signaling mod 99.5 1.2E-12 4.2E-17 137.9 20.6 305 183-519 5-363 (406)
61 2ond_A Cleavage stimulation fa 99.5 1.5E-11 5E-16 124.5 27.3 254 274-546 33-306 (308)
62 4a1s_A PINS, partner of inscut 99.5 2.1E-12 7.1E-17 136.6 21.8 280 186-497 47-372 (411)
63 3vtx_A MAMA; tetratricopeptide 99.5 1.2E-11 4.2E-16 114.5 23.9 172 361-537 4-175 (184)
64 3ulq_A Response regulator aspa 99.5 1.1E-11 3.7E-16 129.8 26.2 231 368-598 109-367 (383)
65 2ond_A Cleavage stimulation fa 99.5 6.9E-11 2.4E-15 119.5 31.1 224 309-537 33-275 (308)
66 3ro2_A PINS homolog, G-protein 99.4 3.5E-12 1.2E-16 130.2 19.6 280 227-535 10-335 (338)
67 3ro2_A PINS homolog, G-protein 99.4 7E-12 2.4E-16 127.9 21.6 280 187-497 5-332 (338)
68 3vtx_A MAMA; tetratricopeptide 99.4 5.4E-11 1.8E-15 110.1 23.8 166 326-496 4-169 (184)
69 3ulq_A Response regulator aspa 99.4 1.5E-11 5E-16 128.8 22.0 227 198-424 23-291 (383)
70 4e6h_A MRNA 3'-END-processing 99.4 5.5E-09 1.9E-13 115.5 42.2 410 165-581 80-585 (679)
71 3nf1_A KLC 1, kinesin light ch 99.4 1.9E-12 6.6E-17 130.8 12.7 250 257-535 27-310 (311)
72 4abn_A Tetratricopeptide repea 99.4 2.3E-11 8E-16 130.8 21.5 210 274-491 85-315 (474)
73 3q15_A PSP28, response regulat 99.4 1.4E-10 4.8E-15 121.0 26.3 229 368-597 107-363 (378)
74 3nf1_A KLC 1, kinesin light ch 99.4 7.2E-12 2.5E-16 126.5 15.6 169 327-495 27-222 (311)
75 4abn_A Tetratricopeptide repea 99.4 4E-11 1.4E-15 128.9 22.1 182 361-547 101-302 (474)
76 4i17_A Hypothetical protein; T 99.3 2.9E-10 9.8E-15 109.2 22.8 209 325-546 5-223 (228)
77 3q15_A PSP28, response regulat 99.3 4.6E-10 1.6E-14 117.1 24.1 312 185-532 8-365 (378)
78 1hz4_A MALT regulatory protein 99.3 2.7E-09 9.4E-14 110.9 29.9 264 232-495 24-320 (373)
79 1hz4_A MALT regulatory protein 99.3 2E-09 6.9E-14 111.9 28.4 274 260-533 17-323 (373)
80 3as5_A MAMA; tetratricopeptide 99.3 3.7E-10 1.3E-14 104.0 19.8 166 365-535 11-176 (186)
81 4gyw_A UDP-N-acetylglucosamine 99.2 3.2E-10 1.1E-14 126.9 21.4 164 364-532 11-174 (723)
82 3as5_A MAMA; tetratricopeptide 99.2 1.2E-09 4E-14 100.5 21.6 163 329-496 10-172 (186)
83 4i17_A Hypothetical protein; T 99.2 3.3E-09 1.1E-13 101.8 24.0 193 396-599 6-209 (228)
84 4gyw_A UDP-N-acetylglucosamine 99.2 8.9E-10 3E-14 123.3 22.3 162 329-495 11-172 (723)
85 3edt_B KLC 2, kinesin light ch 99.2 4.6E-10 1.6E-14 111.3 17.3 200 399-598 45-280 (283)
86 1qqe_A Vesicular transport pro 99.1 1.2E-09 4E-14 109.4 17.4 175 364-540 79-277 (292)
87 3edt_B KLC 2, kinesin light ch 99.1 6.9E-10 2.4E-14 109.9 14.0 98 292-389 43-154 (283)
88 3mv2_B Coatomer subunit epsilo 99.1 2.1E-08 7.3E-13 98.4 23.9 191 346-544 85-294 (310)
89 3dra_A Protein farnesyltransfe 99.1 2.6E-08 9E-13 98.9 24.5 219 375-598 46-286 (306)
90 3mv2_B Coatomer subunit epsilo 99.1 3.1E-08 1.1E-12 97.3 23.0 247 300-572 21-288 (310)
91 2fo7_A Synthetic consensus TPR 99.0 1.9E-08 6.4E-13 86.7 18.4 132 400-535 4-135 (136)
92 2uy1_A Cleavage stimulation fa 99.0 3.3E-07 1.1E-11 98.3 30.1 358 201-598 28-412 (493)
93 1qqe_A Vesicular transport pro 99.0 2.5E-08 8.5E-13 99.7 19.6 25 330-354 120-145 (292)
94 2pzi_A Probable serine/threoni 99.0 1E-08 3.5E-13 115.3 18.6 187 373-565 402-603 (681)
95 2fo7_A Synthetic consensus TPR 99.0 4.9E-08 1.7E-12 84.0 18.5 128 365-496 4-131 (136)
96 4ga2_A E3 SUMO-protein ligase 98.9 1.9E-09 6.4E-14 95.9 8.9 139 405-547 5-144 (150)
97 3urz_A Uncharacterized protein 98.9 3E-08 1E-12 93.5 17.6 132 401-537 58-191 (208)
98 3qky_A Outer membrane assembly 98.9 1.3E-07 4.4E-12 92.7 22.4 193 326-539 14-231 (261)
99 3urz_A Uncharacterized protein 98.9 5.1E-08 1.7E-12 91.9 18.6 135 367-508 59-195 (208)
100 3dra_A Protein farnesyltransfe 98.9 6.9E-07 2.4E-11 88.6 27.1 231 309-545 50-301 (306)
101 2vsy_A XCC0866; transferase, g 98.9 6E-08 2.1E-12 107.0 20.5 164 376-544 3-169 (568)
102 3qky_A Outer membrane assembly 98.9 6.4E-08 2.2E-12 94.8 18.2 190 362-571 15-229 (261)
103 3q7a_A Farnesyltransferase alp 98.9 5.5E-07 1.9E-11 90.3 24.6 219 374-597 66-329 (349)
104 2pzi_A Probable serine/threoni 98.8 2.5E-08 8.6E-13 112.1 15.7 172 408-585 402-583 (681)
105 4gco_A Protein STI-1; structur 98.8 1.1E-07 3.9E-12 81.3 15.7 112 433-546 13-124 (126)
106 2uy1_A Cleavage stimulation fa 98.8 9E-06 3.1E-10 87.1 33.9 344 165-530 28-411 (493)
107 3rjv_A Putative SEL1 repeat pr 98.8 5.5E-07 1.9E-11 85.0 21.1 129 221-356 17-158 (212)
108 3rjv_A Putative SEL1 repeat pr 98.8 6E-07 2E-11 84.8 21.3 126 327-461 18-157 (212)
109 2r5s_A Uncharacterized protein 98.8 6.4E-08 2.2E-12 88.5 14.0 158 333-495 12-171 (176)
110 4ga2_A E3 SUMO-protein ligase 98.8 2.7E-08 9.2E-13 88.3 10.4 143 370-518 5-149 (150)
111 2yhc_A BAMD, UPF0169 lipoprote 98.8 4.6E-07 1.6E-11 86.5 19.8 191 326-536 3-217 (225)
112 3qou_A Protein YBBN; thioredox 98.8 2E-07 6.7E-12 92.8 17.3 164 327-495 117-282 (287)
113 2yhc_A BAMD, UPF0169 lipoprote 98.8 8.1E-07 2.8E-11 84.7 21.0 188 291-498 3-214 (225)
114 2r5s_A Uncharacterized protein 98.7 1.2E-07 4.1E-12 86.6 13.9 162 364-530 8-171 (176)
115 3qou_A Protein YBBN; thioredox 98.7 2.4E-07 8.3E-12 92.1 17.2 165 360-529 115-281 (287)
116 2vsy_A XCC0866; transferase, g 98.7 3.2E-07 1.1E-11 101.2 19.2 156 305-465 2-160 (568)
117 2ifu_A Gamma-SNAP; membrane fu 98.7 2.7E-07 9.1E-12 92.9 16.9 54 301-354 45-103 (307)
118 2ifu_A Gamma-SNAP; membrane fu 98.7 1E-07 3.5E-12 96.0 13.3 164 371-536 45-227 (307)
119 3gyz_A Chaperone protein IPGC; 98.7 1.1E-07 3.7E-12 84.1 10.7 105 431-537 34-138 (151)
120 3u3w_A Transcriptional activat 98.6 9.7E-06 3.3E-10 80.7 25.3 169 402-598 80-265 (293)
121 1hh8_A P67PHOX, NCF-2, neutrop 98.6 1.3E-06 4.5E-11 82.2 17.9 132 399-536 8-154 (213)
122 2vgx_A Chaperone SYCD; alterna 98.6 1.6E-07 5.6E-12 82.9 10.5 115 419-537 9-123 (148)
123 2c2l_A CHIP, carboxy terminus 98.6 3E-07 1E-11 91.1 12.8 93 365-460 7-99 (281)
124 3u3w_A Transcriptional activat 98.6 1.1E-05 3.8E-10 80.2 24.1 164 368-531 81-265 (293)
125 1hh8_A P67PHOX, NCF-2, neutrop 98.6 4.1E-06 1.4E-10 78.8 19.5 125 331-462 10-150 (213)
126 4f3v_A ESX-1 secretion system 98.6 2.5E-06 8.7E-11 82.6 17.6 142 399-545 104-249 (282)
127 3dss_A Geranylgeranyl transfer 98.6 3.8E-05 1.3E-09 76.5 26.5 181 413-598 90-303 (331)
128 3q7a_A Farnesyltransferase alp 98.5 3.4E-05 1.2E-09 77.3 25.9 124 415-541 185-341 (349)
129 2e2e_A Formate-dependent nitri 98.5 1E-06 3.6E-11 80.3 14.0 126 409-538 22-150 (177)
130 2qfc_A PLCR protein; TPR, HTH, 98.5 1.9E-05 6.3E-10 78.6 24.2 129 331-460 79-223 (293)
131 1na0_A Designed protein CTPR3; 98.5 1.9E-06 6.5E-11 72.7 14.5 111 433-545 9-119 (125)
132 1a17_A Serine/threonine protei 98.5 4.7E-06 1.6E-10 74.6 17.5 93 401-496 17-109 (166)
133 1a17_A Serine/threonine protei 98.5 4.3E-06 1.5E-10 74.8 17.1 128 363-494 14-143 (166)
134 4gco_A Protein STI-1; structur 98.5 3.5E-06 1.2E-10 71.8 15.6 97 398-497 14-110 (126)
135 3upv_A Heat shock protein STI1 98.5 2.2E-06 7.6E-11 73.0 14.3 111 433-545 4-120 (126)
136 2c2l_A CHIP, carboxy terminus 98.5 9.3E-07 3.2E-11 87.5 13.3 189 396-598 3-198 (281)
137 3dss_A Geranylgeranyl transfer 98.5 0.0001 3.4E-09 73.5 27.8 189 344-540 91-312 (331)
138 3gw4_A Uncharacterized protein 98.5 1.3E-06 4.5E-11 81.4 13.4 157 374-531 4-175 (203)
139 2qfc_A PLCR protein; TPR, HTH, 98.5 9.8E-06 3.3E-10 80.7 20.6 168 364-531 77-265 (293)
140 2lni_A Stress-induced-phosphop 98.5 1.7E-06 5.8E-11 74.1 12.9 115 430-546 13-127 (133)
141 1na0_A Designed protein CTPR3; 98.5 6.9E-06 2.4E-10 69.1 16.4 98 397-497 9-106 (125)
142 4f3v_A ESX-1 secretion system 98.4 1.2E-05 4.1E-10 77.9 19.1 197 304-509 18-247 (282)
143 3gyz_A Chaperone protein IPGC; 98.4 2.9E-06 9.9E-11 74.8 13.5 103 397-504 36-138 (151)
144 2xcb_A PCRH, regulatory protei 98.4 9.6E-07 3.3E-11 77.2 9.9 105 432-538 17-121 (142)
145 1p5q_A FKBP52, FK506-binding p 98.4 3.3E-06 1.1E-10 86.0 15.1 115 433-548 147-275 (336)
146 2vyi_A SGTA protein; chaperone 98.4 8.2E-06 2.8E-10 69.3 15.3 30 507-536 84-113 (131)
147 1elw_A TPR1-domain of HOP; HOP 98.4 7.8E-06 2.7E-10 68.0 14.8 111 433-545 4-114 (118)
148 2vyi_A SGTA protein; chaperone 98.4 9.6E-06 3.3E-10 68.9 15.7 90 403-495 18-107 (131)
149 2lni_A Stress-induced-phosphop 98.4 6.1E-06 2.1E-10 70.6 14.2 98 396-496 15-112 (133)
150 2fbn_A 70 kDa peptidylprolyl i 98.4 5.2E-07 1.8E-11 84.1 7.6 140 406-548 13-167 (198)
151 2dba_A Smooth muscle cell asso 98.4 1.1E-05 3.7E-10 70.6 15.9 114 430-546 25-142 (148)
152 2e2e_A Formate-dependent nitri 98.4 3.7E-06 1.3E-10 76.5 13.1 120 374-497 22-144 (177)
153 3gw4_A Uncharacterized protein 98.4 4.3E-06 1.5E-10 77.8 13.8 132 329-460 28-174 (203)
154 1p5q_A FKBP52, FK506-binding p 98.3 1.2E-05 4E-10 81.8 17.5 146 326-495 146-292 (336)
155 2vgx_A Chaperone SYCD; alterna 98.3 2.5E-06 8.6E-11 75.1 10.6 98 396-496 20-117 (148)
156 3q49_B STIP1 homology and U bo 98.3 9.6E-06 3.3E-10 70.0 14.1 104 430-535 6-109 (137)
157 4gcn_A Protein STI-1; structur 98.3 1.1E-05 3.7E-10 68.9 13.6 101 435-536 10-116 (127)
158 3sz7_A HSC70 cochaperone (SGT) 98.3 6.4E-06 2.2E-10 73.9 12.7 106 431-538 9-114 (164)
159 4gcn_A Protein STI-1; structur 98.3 1.4E-05 4.7E-10 68.2 14.1 106 398-507 9-120 (127)
160 3upv_A Heat shock protein STI1 98.3 2.2E-05 7.5E-10 66.6 15.1 96 398-496 5-100 (126)
161 4b4t_Q 26S proteasome regulato 98.3 0.00043 1.5E-08 72.8 28.1 167 295-461 58-244 (434)
162 1hxi_A PEX5, peroxisome target 98.3 7.7E-06 2.6E-10 69.1 11.3 98 437-536 21-118 (121)
163 1elw_A TPR1-domain of HOP; HOP 98.2 5.1E-05 1.7E-09 62.9 16.0 98 397-497 4-101 (118)
164 3rkv_A Putative peptidylprolyl 98.2 3.8E-06 1.3E-10 75.2 9.2 111 434-545 12-140 (162)
165 1dce_A Protein (RAB geranylger 98.2 7.1E-05 2.4E-09 81.5 20.1 168 377-549 44-238 (567)
166 2kck_A TPR repeat; tetratricop 98.2 1.5E-05 5E-10 65.6 11.4 103 432-535 5-109 (112)
167 2xcb_A PCRH, regulatory protei 98.2 2.8E-05 9.6E-10 67.7 13.6 96 398-496 19-114 (142)
168 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 1.8E-05 6.2E-10 84.2 14.4 83 468-551 317-399 (457)
169 4b4t_Q 26S proteasome regulato 98.2 5.5E-05 1.9E-09 79.8 18.2 161 400-560 58-239 (434)
170 2fbn_A 70 kDa peptidylprolyl i 98.2 4.2E-05 1.4E-09 70.9 15.2 94 398-494 89-183 (198)
171 3q49_B STIP1 homology and U bo 98.2 5.4E-05 1.8E-09 65.1 14.9 98 396-496 8-105 (137)
172 3sz7_A HSC70 cochaperone (SGT) 98.1 4.8E-05 1.7E-09 68.0 14.9 99 396-497 10-108 (164)
173 1elr_A TPR2A-domain of HOP; HO 98.1 2.6E-05 8.9E-10 66.2 12.2 95 400-496 7-107 (131)
174 1hxi_A PEX5, peroxisome target 98.1 3.3E-05 1.1E-09 65.1 11.7 93 401-496 21-113 (121)
175 1elr_A TPR2A-domain of HOP; HO 98.1 4.1E-05 1.4E-09 64.9 12.3 107 365-474 7-118 (131)
176 2kck_A TPR repeat; tetratricop 98.1 5.2E-05 1.8E-09 62.2 12.4 92 367-461 11-105 (112)
177 2xev_A YBGF; tetratricopeptide 98.1 0.00012 4E-09 62.1 14.9 102 438-540 7-113 (129)
178 2hr2_A Hypothetical protein; a 98.0 3.5E-05 1.2E-09 67.3 11.2 104 436-539 14-138 (159)
179 2dba_A Smooth muscle cell asso 98.0 0.00018 6.1E-09 62.5 16.2 26 294-319 30-55 (148)
180 1ihg_A Cyclophilin 40; ppiase 98.0 2.1E-05 7.3E-10 80.9 11.5 81 467-548 272-352 (370)
181 1dce_A Protein (RAB geranylger 98.0 0.00011 3.9E-09 79.9 16.4 173 412-588 44-244 (567)
182 2if4_A ATFKBP42; FKBP-like, al 98.0 1.7E-05 5.9E-10 80.6 9.4 147 396-563 178-324 (338)
183 3ro3_A PINS homolog, G-protein 98.0 6.9E-05 2.4E-09 66.2 12.3 138 434-598 10-157 (164)
184 3ro3_A PINS homolog, G-protein 97.9 6.2E-05 2.1E-09 66.5 11.4 61 400-460 52-116 (164)
185 3k9i_A BH0479 protein; putativ 97.9 1.5E-05 5E-10 66.8 6.7 93 446-539 3-97 (117)
186 1wao_1 Serine/threonine protei 97.9 6.4E-05 2.2E-09 80.3 13.0 117 372-492 16-134 (477)
187 1wao_1 Serine/threonine protei 97.9 1.8E-05 6.3E-10 84.5 8.3 121 403-527 12-134 (477)
188 3rkv_A Putative peptidylprolyl 97.8 0.00017 5.7E-09 64.3 12.6 65 432-497 62-126 (162)
189 2xev_A YBGF; tetratricopeptide 97.8 0.00039 1.3E-08 58.8 14.4 94 402-497 7-105 (129)
190 1kt0_A FKBP51, 51 kDa FK506-bi 97.8 0.00024 8.1E-09 75.5 15.3 138 327-488 268-405 (457)
191 1ihg_A Cyclophilin 40; ppiase 97.8 0.00029 9.9E-09 72.4 14.2 139 327-488 223-361 (370)
192 2hr2_A Hypothetical protein; a 97.7 0.00046 1.6E-08 60.2 12.7 98 399-496 13-130 (159)
193 2if4_A ATFKBP42; FKBP-like, al 97.7 6.9E-05 2.4E-09 76.1 8.9 153 362-537 179-333 (338)
194 1zu2_A Mitochondrial import re 97.7 9.7E-05 3.3E-09 64.3 8.0 60 484-544 62-132 (158)
195 3k9i_A BH0479 protein; putativ 97.7 6.5E-05 2.2E-09 62.8 6.7 20 403-422 67-86 (117)
196 1klx_A Cysteine rich protein B 97.5 0.0028 9.4E-08 54.5 15.0 86 265-356 33-126 (138)
197 3n71_A Histone lysine methyltr 97.5 0.00052 1.8E-08 72.8 11.9 124 372-495 319-462 (490)
198 1klx_A Cysteine rich protein B 97.5 0.0045 1.5E-07 53.1 16.0 109 412-532 10-126 (138)
199 1zu2_A Mitochondrial import re 97.5 0.00029 9.9E-09 61.3 8.0 98 409-511 14-132 (158)
200 3n71_A Histone lysine methyltr 97.5 0.00045 1.5E-08 73.3 11.2 88 302-389 319-420 (490)
201 2l6j_A TPR repeat-containing p 97.5 0.00012 4E-09 60.2 5.1 62 398-461 5-66 (111)
202 1na3_A Designed protein CTPR2; 97.4 0.0006 2.1E-08 53.3 9.0 78 468-546 9-86 (91)
203 2kat_A Uncharacterized protein 97.3 0.0019 6.4E-08 53.3 10.9 78 381-461 4-81 (115)
204 2l6j_A TPR repeat-containing p 97.3 0.00096 3.3E-08 54.4 8.9 68 468-536 4-71 (111)
205 2kat_A Uncharacterized protein 97.3 0.0025 8.6E-08 52.5 11.5 77 416-495 4-80 (115)
206 1na3_A Designed protein CTPR2; 97.3 0.003 1E-07 49.1 11.4 59 436-495 12-70 (91)
207 3ma5_A Tetratricopeptide repea 97.0 0.0027 9.1E-08 51.0 8.7 64 431-495 5-68 (100)
208 3ly7_A Transcriptional activat 97.0 0.011 3.7E-07 59.1 14.3 73 465-539 274-346 (372)
209 3ma5_A Tetratricopeptide repea 96.9 0.0047 1.6E-07 49.5 9.1 64 396-461 6-69 (100)
210 1pc2_A Mitochondria fission pr 96.8 0.012 4.2E-07 50.5 10.9 94 448-543 13-111 (152)
211 3mkq_A Coatomer beta'-subunit; 96.7 0.047 1.6E-06 62.4 19.5 99 408-528 663-761 (814)
212 3qww_A SET and MYND domain-con 96.7 0.0096 3.3E-07 62.0 12.1 86 446-531 311-410 (433)
213 3mkq_A Coatomer beta'-subunit; 96.7 0.12 4.1E-06 59.0 22.7 45 338-388 663-707 (814)
214 3ly7_A Transcriptional activat 96.7 0.022 7.6E-07 56.9 13.9 74 430-507 274-347 (372)
215 3qwp_A SET and MYND domain-con 96.7 0.017 5.7E-07 60.2 13.4 102 440-541 294-414 (429)
216 2kc7_A BFR218_protein; tetratr 96.6 0.0029 1E-07 50.4 6.1 62 477-539 9-71 (99)
217 3qww_A SET and MYND domain-con 96.6 0.012 4.2E-07 61.2 11.6 92 480-597 310-409 (433)
218 2kc7_A BFR218_protein; tetratr 96.5 0.011 3.9E-07 46.8 8.5 87 438-534 5-92 (99)
219 2v5f_A Prolyl 4-hydroxylase su 96.5 0.024 8.1E-07 45.7 10.4 78 467-544 4-87 (104)
220 3qwp_A SET and MYND domain-con 96.1 0.05 1.7E-06 56.6 13.0 89 301-389 296-398 (429)
221 3u64_A Protein TP_0956; tetrat 95.9 0.6 2.1E-05 44.7 18.2 86 449-536 179-273 (301)
222 1pc2_A Mitochondria fission pr 95.7 0.084 2.9E-06 45.3 10.4 85 413-502 14-103 (152)
223 3u64_A Protein TP_0956; tetrat 95.5 0.14 4.8E-06 49.0 12.1 93 413-508 179-282 (301)
224 1nzn_A CGI-135 protein, fissio 95.5 0.072 2.5E-06 43.9 8.8 96 447-544 15-115 (126)
225 3bee_A Putative YFRE protein; 95.3 0.14 4.9E-06 40.0 9.8 65 431-496 4-71 (93)
226 3mkq_B Coatomer subunit alpha; 95.2 1.4 4.7E-05 38.8 16.8 45 234-284 17-61 (177)
227 3bee_A Putative YFRE protein; 95.2 0.15 5.2E-06 39.8 9.6 67 395-463 4-73 (93)
228 1wy6_A Hypothetical protein ST 95.0 0.8 2.7E-05 37.8 13.3 65 399-465 93-157 (172)
229 3mkq_B Coatomer subunit alpha; 95.0 0.74 2.5E-05 40.5 14.3 44 444-493 16-59 (177)
230 2v5f_A Prolyl 4-hydroxylase su 94.4 0.34 1.1E-05 38.7 10.2 65 432-496 4-74 (104)
231 1wy6_A Hypothetical protein ST 93.9 2.3 7.9E-05 35.2 15.5 139 339-500 19-157 (172)
232 4h7y_A Dual specificity protei 93.8 0.53 1.8E-05 39.8 10.1 109 430-540 10-131 (161)
233 4ady_A RPN2, 26S proteasome re 93.5 13 0.00043 42.1 26.7 192 337-532 384-589 (963)
234 1nzn_A CGI-135 protein, fissio 93.4 0.44 1.5E-05 39.2 8.9 89 410-502 14-106 (126)
235 4b4t_P 26S proteasome regulato 92.8 10 0.00035 39.2 21.9 96 366-461 141-246 (445)
236 4h7y_A Dual specificity protei 92.6 2.8 9.6E-05 35.5 12.7 102 184-287 10-124 (161)
237 3fau_A NEDD4-binding protein 2 92.0 0.51 1.8E-05 35.7 7.1 75 615-692 3-79 (82)
238 1y8m_A FIS1; mitochondria, unk 91.8 4.1 0.00014 34.2 12.8 80 465-544 36-118 (144)
239 3o48_A Mitochondria fission 1 91.3 2.2 7.4E-05 35.3 10.5 82 463-544 35-119 (134)
240 4gns_B Protein CSD3, chitin bi 89.0 1.6 5.5E-05 48.2 10.5 127 189-318 250-397 (754)
241 3lvg_A Clathrin heavy chain 1; 88.7 2.5E-05 8.6E-10 79.1 -25.0 261 292-590 54-324 (624)
242 4ady_A RPN2, 26S proteasome re 86.8 47 0.0016 37.6 29.9 261 302-571 384-662 (963)
243 4b4t_P 26S proteasome regulato 86.1 34 0.0011 35.3 21.9 93 437-529 141-244 (445)
244 1zbp_A Hypothetical protein VP 86.0 19 0.00064 33.9 14.2 117 476-598 5-128 (273)
245 2ff4_A Probable regulatory pro 85.8 3.2 0.00011 42.3 9.9 67 262-329 176-247 (388)
246 2ff4_A Probable regulatory pro 85.6 3.7 0.00013 41.7 10.4 56 403-460 177-232 (388)
247 4fhn_B Nucleoporin NUP120; pro 85.6 30 0.001 40.8 19.4 147 367-520 817-988 (1139)
248 4gns_B Protein CSD3, chitin bi 85.5 3.1 0.0001 46.0 10.1 30 569-598 612-641 (754)
249 2vkc_A NEDD4-binding protein 2 84.4 5.4 0.00018 33.4 8.9 78 612-692 53-132 (135)
250 2wpv_A GET4, UPF0363 protein Y 83.7 33 0.0011 33.2 20.9 25 326-350 133-157 (312)
251 2d9i_A NEDD4-binding protein 2 83.3 6.6 0.00023 30.5 8.6 75 613-692 9-87 (96)
252 1v54_E Cytochrome C oxidase po 81.7 6.7 0.00023 30.5 7.5 63 342-405 25-87 (109)
253 3o48_A Mitochondria fission 1 79.8 21 0.00071 29.5 10.5 72 430-503 37-111 (134)
254 2wpv_A GET4, UPF0363 protein Y 79.5 47 0.0016 32.2 20.5 80 396-495 133-215 (312)
255 3lpz_A GET4 (YOR164C homolog); 78.1 53 0.0018 32.0 22.4 80 326-424 135-214 (336)
256 3txn_A 26S proteasome regulato 76.6 66 0.0023 32.3 18.1 92 438-529 104-207 (394)
257 4fhn_B Nucleoporin NUP120; pro 76.3 39 0.0013 39.8 16.0 146 333-487 818-990 (1139)
258 3ffl_A Anaphase-promoting comp 76.2 25 0.00084 30.3 10.3 26 435-460 65-90 (167)
259 1v54_E Cytochrome C oxidase po 75.7 23 0.00079 27.5 8.8 63 377-441 25-87 (109)
260 2y69_E Cytochrome C oxidase su 74.4 13 0.00043 30.7 7.5 62 343-405 69-130 (152)
261 3lvg_A Clathrin heavy chain 1; 72.7 0.0029 9.8E-08 64.5 -17.2 223 187-446 54-276 (624)
262 3ffl_A Anaphase-promoting comp 70.7 21 0.00072 30.7 8.6 56 194-249 27-90 (167)
263 3esl_A Checkpoint serine/threo 70.3 41 0.0014 30.0 10.6 57 446-502 92-149 (202)
264 1y8m_A FIS1; mitochondria, unk 70.3 47 0.0016 27.8 12.4 67 430-496 36-105 (144)
265 3esl_A Checkpoint serine/threo 69.2 39 0.0013 30.2 10.3 57 410-466 92-148 (202)
266 3lpz_A GET4 (YOR164C homolog); 67.1 98 0.0033 30.2 26.9 80 396-495 135-214 (336)
267 2y69_E Cytochrome C oxidase su 66.5 41 0.0014 27.8 8.8 63 377-441 68-130 (152)
268 2p58_C Putative type III secre 65.7 45 0.0015 25.8 8.6 80 164-252 20-99 (116)
269 2p58_C Putative type III secre 63.2 50 0.0017 25.6 8.2 77 201-287 21-99 (116)
270 2uwj_G Type III export protein 62.7 44 0.0015 25.9 7.8 80 164-252 19-98 (115)
271 4b4t_R RPN7, 26S proteasome re 62.3 55 0.0019 33.5 11.7 60 225-284 134-195 (429)
272 2qx5_A Nucleoporin NIC96; mRNA 61.7 1.8E+02 0.0062 31.5 20.1 220 368-604 300-569 (661)
273 3txn_A 26S proteasome regulato 58.3 1.6E+02 0.0053 29.6 26.9 221 367-602 104-346 (394)
274 1zbp_A Hypothetical protein VP 57.6 1.3E+02 0.0043 28.3 14.7 117 406-534 6-131 (273)
275 2uwj_G Type III export protein 57.5 48 0.0016 25.6 7.2 77 201-287 20-98 (115)
276 4b4t_R RPN7, 26S proteasome re 56.8 1E+02 0.0034 31.5 12.6 95 367-461 136-236 (429)
277 4a1g_A Mitotic checkpoint seri 51.5 47 0.0016 28.2 7.3 51 452-502 84-135 (152)
278 1qsa_A Protein (soluble lytic 50.7 2.6E+02 0.009 30.0 33.3 115 342-461 229-347 (618)
279 3ltm_A Alpha-REP4; protein eng 50.0 1.4E+02 0.0046 26.4 18.8 18 325-342 124-141 (211)
280 4a1g_A Mitotic checkpoint seri 48.6 1.2E+02 0.0042 25.6 10.2 51 416-466 84-134 (152)
281 2wvi_A Mitotic checkpoint seri 46.8 1.4E+02 0.0047 25.6 10.1 52 452-503 79-131 (164)
282 3ltm_A Alpha-REP4; protein eng 45.4 1.6E+02 0.0055 25.9 17.7 17 256-272 32-48 (211)
283 1k1a_A B-cell lymphoma 3-encod 43.3 43 0.0015 30.5 6.7 19 268-286 17-35 (241)
284 3mv2_A Coatomer subunit alpha; 41.3 2.5E+02 0.0086 27.1 11.5 51 485-535 187-239 (325)
285 3eiq_C Programmed cell death p 41.0 69 0.0024 31.7 7.8 25 190-214 57-81 (358)
286 3eiq_C Programmed cell death p 40.1 2.8E+02 0.0096 27.3 13.3 69 436-505 220-290 (358)
287 2zu6_B Programmed cell death p 39.4 1.8E+02 0.0062 27.9 10.4 25 295-319 6-30 (307)
288 4aez_C MAD3, mitotic spindle c 39.1 76 0.0026 28.8 7.0 52 451-502 132-184 (223)
289 2wvi_A Mitotic checkpoint seri 37.1 2E+02 0.0068 24.6 10.8 45 487-531 79-124 (164)
290 1wdy_A 2-5A-dependent ribonucl 36.5 28 0.00096 32.7 4.3 18 193-210 8-25 (285)
291 4aez_C MAD3, mitotic spindle c 36.4 1.5E+02 0.005 26.9 8.5 72 183-257 113-185 (223)
292 1wdy_A 2-5A-dependent ribonucl 36.0 41 0.0014 31.5 5.4 10 409-418 157-166 (285)
293 1k1a_A B-cell lymphoma 3-encod 35.7 37 0.0013 30.9 4.9 85 299-387 13-101 (241)
294 4fke_A Aminopeptidase N; zinc 33.2 5.8E+02 0.02 28.9 16.4 12 553-564 850-861 (909)
295 2d2s_A Exocyst complex compone 33.2 2.6E+02 0.0089 25.6 10.0 26 292-317 91-116 (235)
296 2nsz_A Programmed cell death p 32.9 1.7E+02 0.0059 23.8 7.8 66 436-502 10-77 (129)
297 4g8k_A 2-5A-dependent ribonucl 31.9 97 0.0033 30.0 7.5 57 191-255 26-85 (337)
298 3kae_A CDC27, possible protein 31.1 2.6E+02 0.0088 24.2 15.8 95 505-599 116-237 (242)
299 3qd7_X Uncharacterized protein 29.9 69 0.0024 26.6 4.9 65 614-684 49-117 (137)
300 2d2s_A Exocyst complex compone 29.9 3.2E+02 0.011 25.0 10.0 28 396-423 90-117 (235)
301 1oyz_A Hypothetical protein YI 29.0 3.5E+02 0.012 25.0 23.9 112 256-377 104-221 (280)
302 3pvs_A Replication-associated 28.1 4.9E+02 0.017 26.4 12.7 33 374-406 267-299 (447)
303 3t8k_A Uncharacterized protein 26.1 1.6E+02 0.0054 25.6 7.1 22 269-290 47-68 (186)
304 2ion_A PDCD4, programmed cell 25.9 1.5E+02 0.0052 25.0 6.5 65 436-501 12-78 (152)
305 3kae_A CDC27, possible protein 25.7 2.7E+02 0.0092 24.0 7.7 27 469-495 115-141 (242)
306 1oyz_A Hypothetical protein YI 25.6 4E+02 0.014 24.5 22.3 18 360-377 140-157 (280)
307 1ya0_A SMG-7 transcript varian 25.5 1.8E+02 0.0063 30.2 8.3 67 473-540 157-223 (497)
308 4fke_A Aminopeptidase N; zinc 25.4 7.7E+02 0.026 27.8 15.4 90 261-355 690-786 (909)
309 2zqe_A MUTS2 protein; alpha/be 25.4 1.4E+02 0.0047 22.1 5.4 64 614-687 6-71 (83)
310 2zu6_B Programmed cell death p 24.9 2.2E+02 0.0076 27.3 8.2 25 190-214 6-30 (307)
311 1vje_A Autoinducer-2 productio 23.9 85 0.0029 26.7 4.3 60 623-682 94-153 (166)
312 3eu9_A Huntingtin-interacting 23.1 50 0.0017 29.9 3.2 210 207-427 22-237 (240)
313 2nsz_A Programmed cell death p 22.7 3.1E+02 0.01 22.2 8.6 64 190-254 10-75 (129)
314 3ltj_A Alpharep-4; protein eng 22.5 3.7E+02 0.013 23.1 18.6 10 402-411 126-135 (201)
315 2ijq_A Hypothetical protein; s 22.4 3.5E+02 0.012 23.0 8.0 50 201-250 46-103 (161)
316 3pvs_A Replication-associated 22.2 6.2E+02 0.021 25.6 12.7 33 340-372 268-300 (447)
317 2xig_A Ferric uptake regulatio 22.1 3.4E+02 0.012 22.6 8.1 60 212-272 17-76 (150)
318 2ion_A PDCD4, programmed cell 21.7 2.7E+02 0.0093 23.4 7.3 64 190-254 12-77 (152)
319 3aji_A 26S proteasome non-ATPa 21.7 1.1E+02 0.0039 27.3 5.4 14 268-281 14-27 (231)
320 3kea_A K1L; tropism, ANK repea 21.2 68 0.0023 30.3 3.9 10 494-503 214-223 (285)
321 2fe3_A Peroxide operon regulat 20.8 3E+02 0.01 22.7 7.4 66 345-411 5-70 (145)
322 3bu8_A Telomeric repeat-bindin 20.3 4.7E+02 0.016 23.5 12.0 33 191-223 21-55 (235)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.7e-36 Score=335.43 Aligned_cols=433 Identities=9% Similarity=-0.026 Sum_probs=255.2
Q ss_pred CcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005178 185 METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAIL 264 (710)
Q Consensus 185 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 264 (710)
+++..|+.++..|.+.|++++|..+|++|... .|+..++..++.+|.+.|++++|+.+|+++... .++..+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 34555555555555555555555555555532 345555555555555555555555555555332 34555555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHhC---------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 005178 265 DVYAKSGKVEEVLSLYERGVAS---------------GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVV 329 (710)
Q Consensus 265 ~~~~~~g~~~~A~~~~~~~~~~---------------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 329 (710)
.+|.+.|++++|+++|+++... |.+.+..+|+.++.+|.+.|++++|.++|++|.+.+. .+...
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~ 236 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYEA 236 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-hhhHH
Confidence 5555555555555555532111 1122345555555555555555555555555554321 12222
Q ss_pred --------------------------------------HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005178 330 --------------------------------------YNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371 (710)
Q Consensus 330 --------------------------------------~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 371 (710)
|+.++..|.+.|++++|.++|+++.+. +++..+++.++.+
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 314 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADT 314 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHH
Confidence 222244455566667777777666654 4566677777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHH
Q 005178 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDN 451 (710)
Q Consensus 372 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 451 (710)
|.+.|++++|+++|+++.+.+.. +..+++.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++
T Consensus 315 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~ 391 (597)
T 2xpi_A 315 LFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH--PEKAVTWLAVGIYYLCVNKISE 391 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHhccHHH
Confidence 77777777777777776655433 55566667777777777777777777766544 4566667777777777777777
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005178 452 AIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ 531 (710)
Q Consensus 452 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 531 (710)
|..+|+++.+... .+..+|+.++.+|.+.|++++|+++|+++.+.+. .+..+|..++.+|.+.|++++|.++|+++.+
T Consensus 392 A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (597)
T 2xpi_A 392 ARRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYA 469 (597)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777665432 2456677777777777777777777777665432 2555666677777777777777777777776
Q ss_pred hCCcHHHHHHHHHhhcCCcccHHHHHHHHHHhc-------cCCCC--hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 005178 532 ANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDT-------EVDAR--RPFCNCLIDICRNRNLNERAHELLYLGTLYGLY 602 (710)
Q Consensus 532 ~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~~~-------~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 602 (710)
..|++...+..++..+...| ..++|.++++++ +..|+ ..+|..++.+|.+.|++++|.++|+++.+.+
T Consensus 470 ~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-- 546 (597)
T 2xpi_A 470 LFQYDPLLLNELGVVAFNKS-DMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-- 546 (597)
T ss_dssp HCCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--
T ss_pred hCCCChHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--
Confidence 66666666666665555444 455555555443 33555 3467777777777777777777777766543
Q ss_pred Ccccccccccchhccccc-ChHHHHHHHHHHHHHH
Q 005178 603 PGLHNKTLDEWSLDVRSL-SVGAAQTALEEWMWTL 636 (710)
Q Consensus 603 ~~~~~~~~~~w~~~~~~~-~~G~~~~Al~~~~~~~ 636 (710)
|+ +...|..+...+ ..|+.++|+..|.+.+
T Consensus 547 p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 577 (597)
T 2xpi_A 547 TN----DANVHTAIALVYLHKKIPGLAITHLHESL 577 (597)
T ss_dssp SC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CC----ChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 22 334455444444 3477777777665544
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.9e-34 Score=323.03 Aligned_cols=426 Identities=8% Similarity=-0.038 Sum_probs=364.9
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 005178 159 LILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLF 238 (710)
Q Consensus 159 ~~l~~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 238 (710)
..+...+++++|+.+|+.+... .|+..++..++.+|.+.|++++|..+|+++... .++..+++.++.+|.+.|++
T Consensus 92 ~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~ 166 (597)
T 2xpi_A 92 HDALMQQQYKCAAFVGEKVLDI---TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDW 166 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHccCchHHHHHHHHHHhh---CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhH
Confidence 3445567799999999998754 467789999999999999999999999988643 57899999999999999999
Q ss_pred HHHHHHHHHHHHc---------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH------
Q 005178 239 DEAIEWFERMYKT---------------GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV------ 297 (710)
Q Consensus 239 ~~A~~~~~~m~~~---------------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~------ 297 (710)
++|+++|+++... +...+..+|+.++.+|.+.|++++|+++|++|.+.+ +.+...+..
T Consensus 167 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~ 245 (597)
T 2xpi_A 167 QGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHL 245 (597)
T ss_dssp HHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTC
T ss_pred HHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhc
Confidence 9999999853221 223358899999999999999999999999998764 223333333
Q ss_pred --------------------------------HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 005178 298 --------------------------------LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGL 345 (710)
Q Consensus 298 --------------------------------li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 345 (710)
++..|.+.|++++|.++|+++.+. +++..+|+.++.+|.+.|++++
T Consensus 246 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~ 323 (597)
T 2xpi_A 246 LTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFID 323 (597)
T ss_dssp SCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHH
Confidence 355667889999999999999875 5799999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005178 346 ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425 (710)
Q Consensus 346 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 425 (710)
|.++|+++.+.+ +.+..++..++.+|.+.|++++|..+|+++.+.. +.+..+++.++.+|.+.|++++|.++|+++.+
T Consensus 324 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 401 (597)
T 2xpi_A 324 VLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSST 401 (597)
T ss_dssp HHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 999999999875 4477889999999999999999999999998653 44789999999999999999999999999988
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 005178 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRL 505 (710)
Q Consensus 426 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 505 (710)
.. +.+..+|+.++.+|.+.|++++|..+|+++.+.+. .+..+|..++.+|.+.|++++|+++|+++.+... .+..+
T Consensus 402 ~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~ 477 (597)
T 2xpi_A 402 MD--PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ-YDPLL 477 (597)
T ss_dssp HC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CCHHH
T ss_pred hC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHH
Confidence 65 57899999999999999999999999999998653 3789999999999999999999999999997543 36889
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHh------CCcH-HHHHHHHHhhcCCcccHHHHHHHHHHh-ccCCC-ChhhHHHH
Q 005178 506 CGCLLSVVSLCETSEDVGKVITCLQQA------NPKL-VAFLNLIEDNSTGFENIKEEFRNVIKD-TEVDA-RRPFCNCL 576 (710)
Q Consensus 506 ~~~ll~~~~~~g~~~~a~~~~~~~~~~------~p~~-~~~~~~L~~~~~~~~~~~~~a~~~~~~-~~~~~-~~~~~~~l 576 (710)
|+.++.+|.+.|++++|.++|+++.+. +|+. ...+..++.++...| ..++|.+++++ +...| +..+|..+
T Consensus 478 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~l 556 (597)
T 2xpi_A 478 LNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK-MYDAAIDALNQGLLLSTNDANVHTAI 556 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 999999999999999999999999877 6765 567777777766667 56777777766 44555 45689999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHc
Q 005178 577 IDICRNRNLNERAHELLYLGTLY 599 (710)
Q Consensus 577 ~~~~~~~g~~~~A~~~~~~~~~~ 599 (710)
+.+|.+.|++++|.++|+++++.
T Consensus 557 ~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 557 ALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc
Confidence 99999999999999999998764
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=2.3e-29 Score=270.66 Aligned_cols=187 Identities=13% Similarity=0.144 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHcCCCCCHH
Q 005178 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNL---------FDEAIEWFERMYKTGLMPDEV 258 (710)
Q Consensus 188 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~---------~~~A~~~~~~m~~~g~~~~~~ 258 (710)
.+++.+|++|++.|++++|.++|++|.+.|+.||..|||+||.+|++.+. +++|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 34666677777777777777777777777777777777777776665543 455666666666666666666
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005178 259 TYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMG 338 (710)
Q Consensus 259 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 338 (710)
+|++||.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..||++||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005178 339 KAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK 374 (710)
Q Consensus 339 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 374 (710)
+.|++++|.++|++|.+.|+.|+..||+.++..|+.
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 666666666666666665656666666655555543
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=2.2e-26 Score=242.84 Aligned_cols=375 Identities=13% Similarity=0.069 Sum_probs=320.8
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 005178 160 ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFD 239 (710)
Q Consensus 160 ~l~~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 239 (710)
.+...+++++|+..++.+.+.. +.+...+..+...+...|++++|...++...+.. +.+..+|..+..++.+.|+++
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 3456678999999998887763 5567778888888999999999999999888763 447789999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005178 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMK 319 (710)
Q Consensus 240 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 319 (710)
+|++.|+++.+.... +...|..+..+|.+.|++++|+..|+++.+.. +.+...+..+...|...|++++|..+|+++.
T Consensus 85 ~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 85 EAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 999999999887432 57789999999999999999999999998864 3346677888889999999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 005178 320 SLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399 (710)
Q Consensus 320 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 399 (710)
+.. +-+..+|..+...+.+.|++++|...|+++.+.+ +.+...+..+...+...|++++|+..|++..+.... +..+
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~ 239 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVV 239 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHH
Confidence 863 3357789999999999999999999999998864 445778888999999999999999999998876433 6788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 005178 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479 (710)
Q Consensus 400 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 479 (710)
+..+..+|...|++++|++.|+++.+.. +.+..+|..+..+|.+.|++++|...|+++.+.. +.+..+|..+...+.
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIELQ--PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTC--SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHH
Confidence 9999999999999999999999999876 5678899999999999999999999999998864 347889999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhh
Q 005178 480 KARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDN 546 (710)
Q Consensus 480 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 546 (710)
+.|++++|+..|+++++.. ..+..++..+..+|.+.|++++|...|+++.+++|+...++..++..
T Consensus 317 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~ 382 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 382 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHH
Confidence 9999999999999998642 22467888999999999999999999999999999988877777654
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=4.3e-29 Score=268.60 Aligned_cols=206 Identities=17% Similarity=0.259 Sum_probs=150.2
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC---------H
Q 005178 204 QLIEQLANEMVSNEIELDN-ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK---------V 273 (710)
Q Consensus 204 ~~A~~l~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---------~ 273 (710)
..++.+.+++.+.++.... ..++.+|.+|++.|++++|+++|++|.+.|+.||..+||+||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3455666666666655443 45777788888888888888888888888888888888888888876654 5
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005178 274 EEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353 (710)
Q Consensus 274 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 353 (710)
++|.++|++|...|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 77778888888778888888888888888888888888888888887777888888888888888888888888888888
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 005178 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCAD 409 (710)
Q Consensus 354 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 409 (710)
.+.|+.||..||++||.+|++.|+.++|.++|++|.+.|..|+..||+.++..|+.
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 87788888888888888888888888888888888877777888888777777764
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=4.7e-26 Score=240.32 Aligned_cols=381 Identities=12% Similarity=0.067 Sum_probs=281.7
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 005178 193 TMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK 272 (710)
Q Consensus 193 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 272 (710)
+...+.+.|++++|++.++++.+.. +.+...+..+...+...|++++|..+++...+.. +.+..+|..+..+|.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 3455677888888888888887753 2244555666667888888888888888887764 3377888888888888888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005178 273 VEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352 (710)
Q Consensus 273 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 352 (710)
+++|+..|+++.+.. +.+..+|..+..+|.+.|++++|...|+++.+.. +.+...+..+...+...|++++|.+.|++
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 888888888887753 3345678888888888888888888888887753 22445677777888888888888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCC
Q 005178 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPD 432 (710)
Q Consensus 353 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 432 (710)
+.+.. +.+..+|..+...|.+.|++++|+..|+++.+.+.. +...+..+...+...|++++|...|.+..... +.+
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~ 236 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS--PNH 236 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC--TTC
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cCC
Confidence 87753 345677888888888888888888888888876433 56778888888888888888888888887765 556
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005178 433 NYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSV 512 (710)
Q Consensus 433 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 512 (710)
..++..+..+|...|++++|...|+++.+.+.. +..+|..+..+|.+.|++++|+..|+++++.. ..+..++..+..+
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHH
Confidence 788888888888888888888888888875432 56778888888888888888888888887653 3356678888888
Q ss_pred HHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHHHHh-ccCCCChh-hHHHHHHHHHhCC
Q 005178 513 VSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKD-TEVDARRP-FCNCLIDICRNRN 584 (710)
Q Consensus 513 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~~-~~~~~~~~-~~~~l~~~~~~~g 584 (710)
+...|++++|.+.++++.+..|+.......++.++...| ..++|...+++ +...|+.. .|..++.++.+.|
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG-KLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTT-CCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 888888888888888888777776666666665555545 33444444433 34444432 5555555555444
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=3e-22 Score=215.50 Aligned_cols=327 Identities=13% Similarity=0.018 Sum_probs=204.8
Q ss_pred CCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005178 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAI 263 (710)
Q Consensus 184 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 263 (710)
+.+...|..+...|.+.|++++|+.+|+++.+.. +.+...|..+..++...|++++|+..|+++.+.+.. +...+..+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 100 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQR 100 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHH
Confidence 4567778888888888888888888888877652 235677777777888888888888888888776533 57777778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 005178 264 LDVYAKSGKVEEVLSLYERGVASGWKPD-P---IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339 (710)
Q Consensus 264 i~~~~~~g~~~~A~~~~~~~~~~g~~~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 339 (710)
..+|.+.|++++|...|+++.+.. |+ . ..+..++..+.. ..+..+...+.+
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~ 155 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFG 155 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHH
Confidence 888888888888888888877653 33 3 455555443110 011122333445
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005178 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419 (710)
Q Consensus 340 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 419 (710)
.|++++|...|+++.+.. +.+...+..+..+|.+.|++++|+.+|+++.+... .+..++..+..+|...|++++|...
T Consensus 156 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~ 233 (450)
T 2y4t_A 156 SGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSE 233 (450)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 555555555555555432 23445555555555555555555555555554321 2455555555555556666666666
Q ss_pred HHHHHhCCCCCCCHHHHHHH------------HHHHHhCCCHHHHHHHHHHHHHcCCCcC-----HHHHHHHHHHHHhcC
Q 005178 420 FEDMKLSDYCKPDNYSYTAM------------LNIYGSGGNVDNAIELFEEMSELGVAIN-----VMGCTCLIQCLGKAR 482 (710)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g 482 (710)
|+++.+.. +.+...+..+ +..|...|++++|..+|+++.+.. |+ ...|..+..++.+.|
T Consensus 234 ~~~~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g 309 (450)
T 2y4t_A 234 VRECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDE 309 (450)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHhC--CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCC
Confidence 65555443 3334444333 666777777777777777776632 33 345666677777777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHH
Q 005178 483 RIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIE 544 (710)
Q Consensus 483 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~ 544 (710)
++++|+..++++++.. ..+...|..+..+|...|++++|...++++.+++|++..+...++
T Consensus 310 ~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 310 KPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLE 370 (450)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 7777777777776532 124566777777777777777777777777777777766666555
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=6.4e-23 Score=224.66 Aligned_cols=403 Identities=11% Similarity=-0.036 Sum_probs=301.6
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005178 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266 (710)
Q Consensus 187 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 266 (710)
...+......+.+.|++++|+..|+++.... |+...|..+..++.+.|++++|++.|+++.+.+.. +..++..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD-YSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH-HHHHHHHHHHH
Confidence 4556677788888888999988888888764 68888888888888888899998888888877533 67788888888
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------------------------
Q 005178 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL------------------------- 321 (710)
Q Consensus 267 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------------------------- 321 (710)
|.+.|++++|+..|+++...+ +++......++..+........+.+.+..+...
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 888889999988888888765 334444444444444333333332222111100
Q ss_pred ----------CC---------CCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHH-----CCCC--------CCHHHHH
Q 005178 322 ----------GV---------QPNLVVYNTLLEAMGK---AGKPGLARSLFDEMVE-----SGLT--------PDEKTLT 366 (710)
Q Consensus 322 ----------g~---------~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~--------p~~~~~~ 366 (710)
.. +.+...+..+...+.. .|++++|..+|+++.+ ..-. .+..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 00 1113444444444444 7899999999999887 3111 2345677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhC
Q 005178 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446 (710)
Q Consensus 367 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 446 (710)
.+...|...|++++|...|+++.+.... ...+..+...|...|++++|...++++.+.. +.+...+..+...|...
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~ 317 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD--SNNSSVYYHRGQMNFIL 317 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC--TTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC--cCCHHHHHHHHHHHHHh
Confidence 8888899999999999999998886544 7788888999999999999999999988776 56778889999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 005178 447 GNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526 (710)
Q Consensus 447 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 526 (710)
|++++|...|+++.+.... +...+..+...|...|++++|+.+|+++.+.... +...+..+..+|...|++++|...+
T Consensus 318 ~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 318 QNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp TCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999999886443 6778888899999999999999999998864322 4567888888999999999999999
Q ss_pred HHHHHhCCcHHH------HHHHHHhhcCC---cccHHHHHHHHHHh-ccCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHH
Q 005178 527 TCLQQANPKLVA------FLNLIEDNSTG---FENIKEEFRNVIKD-TEVDAR-RPFCNCLIDICRNRNLNERAHELLYL 595 (710)
Q Consensus 527 ~~~~~~~p~~~~------~~~~L~~~~~~---~~~~~~~a~~~~~~-~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 595 (710)
+++.+..|+... .+..++.++.. .| ..++|..+++. +...|+ ..+|..++.+|.+.|++++|.+.|++
T Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 474 (514)
T 2gw1_A 396 DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVE-NFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEE 474 (514)
T ss_dssp HHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTT-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcC-CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 999888777643 66777777666 56 56666666655 444554 34788999999999999999999999
Q ss_pred HHHcC
Q 005178 596 GTLYG 600 (710)
Q Consensus 596 ~~~~~ 600 (710)
++...
T Consensus 475 a~~~~ 479 (514)
T 2gw1_A 475 SADLA 479 (514)
T ss_dssp HHHHC
T ss_pred HHHhc
Confidence 87543
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=1.3e-21 Score=210.51 Aligned_cols=316 Identities=11% Similarity=0.038 Sum_probs=201.8
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 005178 160 ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFD 239 (710)
Q Consensus 160 ~l~~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 239 (710)
.+...+++++|+.+|+.+... .+.+..+|..+..+|...|++++|+..|+++.+.+. .+...+..+..+|.+.|+++
T Consensus 35 ~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~ 111 (450)
T 2y4t_A 35 KLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQRGHLLLKQGKLD 111 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHH
Confidence 345567899999999999876 356789999999999999999999999999998742 36788999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCH---HHHHHHHHH------------HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005178 240 EAIEWFERMYKTGLMPDE---VTYSAILDV------------YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304 (710)
Q Consensus 240 ~A~~~~~~m~~~g~~~~~---~~~~~li~~------------~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 304 (710)
+|.+.|+++.+.... +. ..+..++.. |.+.|++++|+..|+++.+.. +.+..++..++.+|.+
T Consensus 112 ~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 189 (450)
T 2y4t_A 112 EAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIK 189 (450)
T ss_dssp HHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 999999999986422 34 667766555 444555555555555554432 2334444445555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005178 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384 (710)
Q Consensus 305 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 384 (710)
.|++++|..+|+++.+.. +.+..+|..+..+|...|++++|+..|+++.+.. +.+...+..+...
T Consensus 190 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~------------- 254 (450)
T 2y4t_A 190 EGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQV------------- 254 (450)
T ss_dssp TTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH-------------
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHH-------------
Confidence 555555555555544321 2234444444555555555555555555444331 1111112111000
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005178 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPD----NYSYTAMLNIYGSGGNVDNAIELFEEMS 460 (710)
Q Consensus 385 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~ 460 (710)
. ....+..+...|...|++++|..+|+++.+.. +.+ ...|..+..+|.+.|++++|...++++.
T Consensus 255 ----~------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 322 (450)
T 2y4t_A 255 ----K------KLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVL 322 (450)
T ss_dssp ----H------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred ----H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 0 00011223667777788888888888777654 223 3467777778888888888888888877
Q ss_pred HcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 005178 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD-DRLCGCLL 510 (710)
Q Consensus 461 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll 510 (710)
+... .+...|..+..+|...|++++|+..|+++++. .|+ ...+..+.
T Consensus 323 ~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 370 (450)
T 2y4t_A 323 QMEP-DNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLE 370 (450)
T ss_dssp HHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHH
T ss_pred HhCc-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 6432 25677778888888888888888888887763 343 33444444
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=4.8e-22 Score=217.71 Aligned_cols=372 Identities=10% Similarity=0.030 Sum_probs=237.1
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 005178 160 ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFD 239 (710)
Q Consensus 160 ~l~~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 239 (710)
.+...+++++|+..|+.+.... |+...|..+..+|.+.|++++|+..|+++.+.+ +.+...|..+..++...|+++
T Consensus 15 ~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 90 (514)
T 2gw1_A 15 QFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFA 90 (514)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHH
Confidence 4556678999999999998864 689999999999999999999999999999874 336678999999999999999
Q ss_pred HHHHHHHHHHHcCCCCC---------------------------------------------------------------
Q 005178 240 EAIEWFERMYKTGLMPD--------------------------------------------------------------- 256 (710)
Q Consensus 240 ~A~~~~~~m~~~g~~~~--------------------------------------------------------------- 256 (710)
+|+..|+++.+.+.. +
T Consensus 91 ~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (514)
T 2gw1_A 91 DAMFDLSVLSLNGDF-NDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFG 169 (514)
T ss_dssp HHHHHHHHHHHSSSC-CGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHh
Confidence 999999999876531 2
Q ss_pred ----------------HHHHHHHHHHHHH---cCCHHHHHHHHHHHHh-----CCC--------CCCHHHHHHHHHHHHh
Q 005178 257 ----------------EVTYSAILDVYAK---SGKVEEVLSLYERGVA-----SGW--------KPDPIAFSVLGKMFGE 304 (710)
Q Consensus 257 ----------------~~~~~~li~~~~~---~g~~~~A~~~~~~~~~-----~g~--------~~~~~~~~~li~~~~~ 304 (710)
...+..+...+.. .|++++|+.+|+++.+ ..- +.+..++..+...+..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (514)
T 2gw1_A 170 IFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFL 249 (514)
T ss_dssp TSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHH
Confidence 2222222222222 5666666666666655 210 1123455556666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005178 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384 (710)
Q Consensus 305 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 384 (710)
.|++++|..+|+++.+.. |+..++..+...+...|++++|...|+++.+.. +.+...+..+...|...|++++|...
T Consensus 250 ~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 326 (514)
T 2gw1_A 250 KNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKD 326 (514)
T ss_dssp SSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHH
T ss_pred CCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 666666666666666543 235556666666666666666666666665543 23445556666666666666666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 005178 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464 (710)
Q Consensus 385 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 464 (710)
|+++.+.... +...+..+...|...|++++|...++++.+.. +.+...+..+...|...|++++|...++++.+...
T Consensus 327 ~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 403 (514)
T 2gw1_A 327 FDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELEN 403 (514)
T ss_dssp HHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 6666654332 44555666666666666666666666665544 34455666666666666666666666666654221
Q ss_pred C-cC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcH
Q 005178 465 A-IN----VMGCTCLIQCLGK---ARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKL 536 (710)
Q Consensus 465 ~-p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 536 (710)
. ++ ...|..+..+|.. .|++++|+..|+++.+... .+..++..+..+|...|++++|...|+++.+..|++
T Consensus 404 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 482 (514)
T 2gw1_A 404 KLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP-RSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTM 482 (514)
T ss_dssp TSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSH
T ss_pred ccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcccc
Confidence 1 11 2356666666666 6666666666666655321 134455566666666666666666666666666666
Q ss_pred HHHHHHH
Q 005178 537 VAFLNLI 543 (710)
Q Consensus 537 ~~~~~~L 543 (710)
......+
T Consensus 483 ~~~~~~~ 489 (514)
T 2gw1_A 483 EEKLQAI 489 (514)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555444
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=3e-20 Score=204.70 Aligned_cols=362 Identities=12% Similarity=0.108 Sum_probs=182.8
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 005178 160 ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFD 239 (710)
Q Consensus 160 ~l~~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 239 (710)
.+...+++++|+..|+.+.... +.+..+|..+..+|.+.|++++|+..|+++.+.. +.+...+..+..++...|+++
T Consensus 34 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~ 110 (537)
T 3fp2_A 34 HFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFT 110 (537)
T ss_dssp HHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHH
Confidence 3455667888888888887763 5677888888888888999999999998888764 235677888888888889999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC------------------------------------------------
Q 005178 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSG------------------------------------------------ 271 (710)
Q Consensus 240 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g------------------------------------------------ 271 (710)
+|++.|+.+ .. .|+. ....+..+...+
T Consensus 111 ~A~~~~~~~-~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (537)
T 3fp2_A 111 DAMFDLSVL-SL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNT 185 (537)
T ss_dssp HHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCC
T ss_pred HHHHHHHHH-hc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhh
Confidence 998888633 22 1111 111122222223
Q ss_pred -------------------------------CHHHHHHHHHHHHhCCCCCC--------HHHHHHHHHHHHhcCCHHHHH
Q 005178 272 -------------------------------KVEEVLSLYERGVASGWKPD--------PIAFSVLGKMFGESGDYDGIR 312 (710)
Q Consensus 272 -------------------------------~~~~A~~~~~~~~~~g~~~~--------~~~~~~li~~~~~~g~~~~A~ 312 (710)
++++|+.+|+++.+.. |+ ..++..+...+...|++++|.
T Consensus 186 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~ 263 (537)
T 3fp2_A 186 SSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQ 263 (537)
T ss_dssp CCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHHH
Confidence 3444444444444432 22 112333444444445555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 005178 313 YVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENK 392 (710)
Q Consensus 313 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 392 (710)
..|+++.+. .|+..+|..+...+...|++++|...|+++.+.. +.+..++..+...|...|++++|+..|+++.+..
T Consensus 264 ~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 340 (537)
T 3fp2_A 264 VLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN 340 (537)
T ss_dssp HHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 555554443 2334444444444555555555555555544432 2234444444455555555555555555544432
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-----CCcC
Q 005178 393 WPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG-----VAIN 467 (710)
Q Consensus 393 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~p~ 467 (710)
.. +...+..+...|...|++++|.++++++.+.. +.+...+..+...|...|++++|...|+++.+.. ....
T Consensus 341 ~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 417 (537)
T 3fp2_A 341 PE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVG 417 (537)
T ss_dssp TT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSST
T ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHH
Confidence 22 33444444455555555555555555544443 3334444445555555555555555555444321 0011
Q ss_pred HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHH
Q 005178 468 VMGCTCLIQCLGKA----------RRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLV 537 (710)
Q Consensus 468 ~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 537 (710)
...+..+..+|.+. |++++|+..|+++.+... .+...+..+..+|...|++++|.+.|+++.++.|+..
T Consensus 418 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 496 (537)
T 3fp2_A 418 IGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP-RSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMD 496 (537)
T ss_dssp THHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CH
T ss_pred HHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 12222333344444 555555555555443221 1233444444555555555555555555555544444
Q ss_pred H
Q 005178 538 A 538 (710)
Q Consensus 538 ~ 538 (710)
.
T Consensus 497 ~ 497 (537)
T 3fp2_A 497 E 497 (537)
T ss_dssp H
T ss_pred H
Confidence 3
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=3.9e-21 Score=211.75 Aligned_cols=400 Identities=13% Similarity=-0.002 Sum_probs=305.8
Q ss_pred cHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005178 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265 (710)
Q Consensus 186 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 265 (710)
....|..+...+.+.|++++|+..|+++++.. +.+...|..+..+|.+.|++++|++.|+++.+.... +...+..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHH
Confidence 34667888999999999999999999999864 347889999999999999999999999999987643 7889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCCCHHHH---------
Q 005178 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL------GVQPNLVVY--------- 330 (710)
Q Consensus 266 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~~~--------- 330 (710)
+|...|++++|+..|+ .... .|+ .....+..+...+...+|..+++++... ...|+....
T Consensus 102 ~~~~~g~~~~A~~~~~-~~~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLS-VLSL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHHHcCCHHHHHHHHH-HHhc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 9999999999999997 4332 232 2223344556666678888888887542 112222221
Q ss_pred ---------------------HHHHHHH--------HHcCCHHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHHh
Q 005178 331 ---------------------NTLLEAM--------GKAGKPGLARSLFDEMVESGLTPD-------EKTLTALIKIYGK 374 (710)
Q Consensus 331 ---------------------~~li~~~--------~~~g~~~~A~~~~~~m~~~g~~p~-------~~~~~~li~~~~~ 374 (710)
..+...+ ...|++++|..+|+++.+.. +.+ ..++..+...+..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 177 HLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHh
Confidence 1111111 11257899999999998763 222 2356677788889
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 005178 375 ARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIE 454 (710)
Q Consensus 375 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 454 (710)
.|++++|...|+++.+.. |+...+..+...|...|++++|.+.|+++.+.. +.+..+|..+...|...|++++|..
T Consensus 256 ~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~ 331 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN--PEYPPTYYHRGQMYFILQDYKNAKE 331 (537)
T ss_dssp TTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC--CCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 999999999999999864 457888899999999999999999999999876 5788999999999999999999999
Q ss_pred HHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Q 005178 455 LFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANP 534 (710)
Q Consensus 455 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 534 (710)
.|+++.+.... +...|..+..+|...|++++|+.+|+++.+.... +...+..+..+|...|++++|.+.|+++.+..|
T Consensus 332 ~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 332 DFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp HHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 99999986533 5788999999999999999999999999975422 456888899999999999999999999988766
Q ss_pred cHHHH------HHHHHhhcCCc----------ccHHHHHHHHHHh-ccCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHHH
Q 005178 535 KLVAF------LNLIEDNSTGF----------ENIKEEFRNVIKD-TEVDAR-RPFCNCLIDICRNRNLNERAHELLYLG 596 (710)
Q Consensus 535 ~~~~~------~~~L~~~~~~~----------~~~~~~a~~~~~~-~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 596 (710)
+.... ...++.++... | ..++|..++++ +...|+ ..+|..++.+|.+.|++++|.+.|+++
T Consensus 410 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEE-KFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp HCSSCSSTTHHHHHHHHHHHHHHTC----CCHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHhhccchhhhHh-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 54321 22223333322 4 66777777765 445554 448899999999999999999999998
Q ss_pred HHcC
Q 005178 597 TLYG 600 (710)
Q Consensus 597 ~~~~ 600 (710)
++..
T Consensus 489 l~~~ 492 (537)
T 3fp2_A 489 AILA 492 (537)
T ss_dssp HHHC
T ss_pred HHhC
Confidence 7543
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=6.5e-19 Score=182.72 Aligned_cols=328 Identities=12% Similarity=0.017 Sum_probs=228.0
Q ss_pred cHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005178 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265 (710)
Q Consensus 186 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 265 (710)
|+..+..+...+...|++++|+..|+++.+.. +.+...+..+..++...|++++|+..|+++.+.... +...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHH
Confidence 34556666667777777777777777776642 224566666666777777777777777776665322 5566666667
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 005178 266 VYAKSGKVEEVLSLYERGVASGWKP----DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG 341 (710)
Q Consensus 266 ~~~~~g~~~~A~~~~~~~~~~g~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 341 (710)
.|...|++++|...|+++.+.. | +...+..+...+. ...+..+...+...|
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~ 134 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGA 134 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTT
T ss_pred HHHHcCChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHcc
Confidence 7777777777777777766542 3 2222322211100 011223356677777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005178 342 KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFE 421 (710)
Q Consensus 342 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 421 (710)
++++|.++|+++.+.. +.+...+..+...|...|++++|...++++.+... .+...+..+...|...|++++|.+.|+
T Consensus 135 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~ 212 (359)
T 3ieg_A 135 DYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVR 212 (359)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7888888777777653 34566777777777888888888888887776633 366777778888888888888888888
Q ss_pred HHHhCCCCCCCHHHHH------------HHHHHHHhCCCHHHHHHHHHHHHHcCCCcCH----HHHHHHHHHHHhcCCHH
Q 005178 422 DMKLSDYCKPDNYSYT------------AMLNIYGSGGNVDNAIELFEEMSELGVAINV----MGCTCLIQCLGKARRID 485 (710)
Q Consensus 422 ~~~~~~~~~~~~~~~~------------~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~ 485 (710)
+..+.. +.+...+. .+...+...|++++|...++++.+.... +. ..+..+..+|.+.|+++
T Consensus 213 ~a~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~ 289 (359)
T 3ieg_A 213 ECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPV 289 (359)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHhhC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHH
Confidence 877665 34444443 3366788999999999999999885433 22 33556788899999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhh
Q 005178 486 DLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDN 546 (710)
Q Consensus 486 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 546 (710)
+|+..|+++.+... .+..++..+..+|...|++++|.+.|+++.+.+|++..+...|+.+
T Consensus 290 ~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 349 (359)
T 3ieg_A 290 EAIRICSEVLQMEP-DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKA 349 (359)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 99999999987532 2677888999999999999999999999999999988877766654
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=4e-18 Score=176.77 Aligned_cols=320 Identities=10% Similarity=0.026 Sum_probs=203.6
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 005178 159 LILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLF 238 (710)
Q Consensus 159 ~~l~~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 238 (710)
..+...+++++|+..|+.+.... +.+..+|..+..++...|++++|+..|+++.+.. +-+...|..+..++...|++
T Consensus 11 ~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 87 (359)
T 3ieg_A 11 KKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKL 87 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCCh
Confidence 34556778999999999998764 5678899999999999999999999999999863 23678889999999999999
Q ss_pred HHHHHHHHHHHHcCCC--CCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005178 239 DEAIEWFERMYKTGLM--PDEVTYSAI------------LDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304 (710)
Q Consensus 239 ~~A~~~~~~m~~~g~~--~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 304 (710)
++|...|+++.+.... .+...+..+ ...+...|++++|+..|+++.+.. +.+...+..+...|..
T Consensus 88 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 166 (359)
T 3ieg_A 88 DEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIK 166 (359)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHH
Confidence 9999999999886320 134444444 344455555555555555554432 2344445555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005178 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384 (710)
Q Consensus 305 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 384 (710)
.|++++|...++++.+.. +.+..++..+...+...|++++|...|++..+.. +.+...+..+
T Consensus 167 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~---------------- 228 (359)
T 3ieg_A 167 EGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHY---------------- 228 (359)
T ss_dssp TTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHH----------------
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHH----------------
Confidence 555555555555554432 2234444455555555555555555555544331 1111111111
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005178 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDN----YSYTAMLNIYGSGGNVDNAIELFEEMS 460 (710)
Q Consensus 385 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~ 460 (710)
..+. .......+...+...|++++|...++++.+.. +.+. ..+..+..+|...|++++|...++++.
T Consensus 229 -~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 299 (359)
T 3ieg_A 229 -KQVK------KLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVL 299 (359)
T ss_dssp -HHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 0000 00111233556777888888888888877755 2333 234556777888888888888888887
Q ss_pred HcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 005178 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD-DRLCGCLLSV 512 (710)
Q Consensus 461 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~ 512 (710)
+... .+...|..+..+|.+.|++++|+..|+++++. .|+ ...+..+..+
T Consensus 300 ~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~ 349 (359)
T 3ieg_A 300 QMEP-DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKA 349 (359)
T ss_dssp HHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHH
T ss_pred HhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHH
Confidence 7532 26777888888888888888888888888764 344 3344444433
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=2.1e-18 Score=176.71 Aligned_cols=285 Identities=10% Similarity=-0.049 Sum_probs=204.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005178 256 DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLE 335 (710)
Q Consensus 256 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 335 (710)
+...+..+...+...|++++|+.+|+++.+.. +.+...+..++..+...|++++|..+++++.+.. +.+...|..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 44455666666667777777777777776543 3344555566667777777777777777776643 234566777777
Q ss_pred HHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 005178 336 AMGKAG-KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414 (710)
Q Consensus 336 ~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 414 (710)
.+...| ++++|...|+++.+.. +.+...|..+...|...|++++|+..|+++.+.... +...+..+...|...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHH
Confidence 777777 7777777777777653 334556777777777777888888777777765433 4455666777788888888
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--------CCcCHHHHHHHHHHHHhcCCHHH
Q 005178 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG--------VAINVMGCTCLIQCLGKARRIDD 486 (710)
Q Consensus 415 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--------~~p~~~~~~~li~~~~~~g~~~~ 486 (710)
+|.+.++++.+.. +.+...+..+...|...|++++|...++++.+.. ...+..+|..+..+|.+.|++++
T Consensus 177 ~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALSIA--PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhC--CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 8888888887765 5667788888888888888888888888877631 12345678888888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhc
Q 005178 487 LVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNS 547 (710)
Q Consensus 487 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~ 547 (710)
|+..|+++.+.... +...+..+..+|...|++++|.+.++++.+++|++..+...++.++
T Consensus 255 A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 255 ALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence 88888888764322 4567778888888888888888888888888888877777776654
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.83 E-value=1.4e-15 Score=165.27 Aligned_cols=352 Identities=13% Similarity=0.024 Sum_probs=298.9
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHc----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----c
Q 005178 164 LKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRF----GRQFQLIEQLANEMVSNEIELDNITYSTIITCAKR----C 235 (710)
Q Consensus 164 l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~----~ 235 (710)
.++++.|+..|+..... .+...+..+...|.. .+++++|...|++..+.| +...+..+...|.. .
T Consensus 56 ~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~ 128 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQ----GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVK 128 (490)
T ss_dssp CCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred CcCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC
Confidence 45789999999988765 356778888888988 899999999999999875 67777788888888 7
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCC
Q 005178 236 NLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAK----SGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE----SGD 307 (710)
Q Consensus 236 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~ 307 (710)
+++++|+++|++..+.| +...+..|...|.. .+++++|++.|++..+.| +...+..|...|.. .++
T Consensus 129 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~ 202 (490)
T 2xm6_A 129 VDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERN 202 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcC
Confidence 89999999999998875 67888888888887 789999999999999874 78888889999988 899
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHH
Q 005178 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK----AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK----ARWAK 379 (710)
Q Consensus 308 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~ 379 (710)
+++|...|++..+.| +...+..+...|.. .+++++|..+|++..+.| +...+..+...|.. .++.+
T Consensus 203 ~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~ 276 (490)
T 2xm6_A 203 DAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPL 276 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHH
Confidence 999999999998865 67788888888887 789999999999998764 55677778888887 89999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCC---CHHH
Q 005178 380 DALELWERMRENKWPMDFILYNTLLNMCADI-----GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG---NVDN 451 (710)
Q Consensus 380 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~ 451 (710)
+|+..|++..+.| +...+..+...|... +++++|...|++..+.+ +...+..+...|...| ++++
T Consensus 277 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~y~~~g~~~~~~~ 349 (490)
T 2xm6_A 277 KALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG----DATAQANLGAIYFRLGSEEEHKK 349 (490)
T ss_dssp HHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHSCCHHHHHH
T ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCcccHHH
Confidence 9999999998764 566778888888887 89999999999998854 5677888888888867 7899
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHH
Q 005178 452 AIELFEEMSELGVAINVMGCTCLIQCLGK----ARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSL----CETSEDVG 523 (710)
Q Consensus 452 A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~ 523 (710)
|..+|++..+.| +...+..+...|.. .+++++|+..|++..+.| +...+..|..+|.. .++.++|.
T Consensus 350 A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~ 423 (490)
T 2xm6_A 350 AVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAW 423 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 999999998863 67888899999988 899999999999999876 56778888888888 89999999
Q ss_pred HHHHHHHHhCC---cHHHHHHHHHhhc
Q 005178 524 KVITCLQQANP---KLVAFLNLIEDNS 547 (710)
Q Consensus 524 ~~~~~~~~~~p---~~~~~~~~L~~~~ 547 (710)
..|+++.+.+| ++..+...|+..+
T Consensus 424 ~~~~~A~~~~~~~~~~~~a~~~l~~~~ 450 (490)
T 2xm6_A 424 AWFDTASTNDMNLFGTENRNITEKKLT 450 (490)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHCCCCCcCCHHHHHHHHhcC
Confidence 99999998884 4666777777643
No 17
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.83 E-value=1.6e-16 Score=174.49 Aligned_cols=406 Identities=9% Similarity=0.034 Sum_probs=281.5
Q ss_pred CCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005178 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAI 263 (710)
Q Consensus 184 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 263 (710)
+.|...|..++. +.+.|++++|..+|+++++. .+-+...|...+..+.+.|++++|..+|+++++. .|+...|..+
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~ 85 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCY 85 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHH
Confidence 557778888887 46778888888888888875 2335677888888888888888888888888876 3577777776
Q ss_pred HHHH-HHcCCHHHHHH----HHHHHHhC-CCC-CCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCCH
Q 005178 264 LDVY-AKSGKVEEVLS----LYERGVAS-GWK-PDPIAFSVLGKMFGE---------SGDYDGIRYVLQEMKSLGVQPNL 327 (710)
Q Consensus 264 i~~~-~~~g~~~~A~~----~~~~~~~~-g~~-~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~ 327 (710)
+... ...|+.++|.+ +|++.+.. |.. .+...|...+....+ .|+++.|..+|++..+.......
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~ 165 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIE 165 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHH
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHH
Confidence 6533 34566665554 66666542 433 346677777766554 67888888888888773111112
Q ss_pred HHHHHHHHHH-------------HHcCCHHHHHHHHHHHH------HCC---CCCC--------HHHHHHHHHHHHhc--
Q 005178 328 VVYNTLLEAM-------------GKAGKPGLARSLFDEMV------ESG---LTPD--------EKTLTALIKIYGKA-- 375 (710)
Q Consensus 328 ~~~~~li~~~-------------~~~g~~~~A~~~~~~m~------~~g---~~p~--------~~~~~~li~~~~~~-- 375 (710)
..|....... .+.+++..|..++.++. +.. ++|+ ...|...+......
T Consensus 166 ~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~ 245 (530)
T 2ooe_A 166 QLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPL 245 (530)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCc
Confidence 3333322211 12345777777776632 211 2443 24555555433322
Q ss_pred --CCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHhCCCCCCCHHH
Q 005178 376 --RWA----KDALELWERMRENKWPMDFILYNTLLNMCAD-------IGLVE-------EAERLFEDMKLSDYCKPDNYS 435 (710)
Q Consensus 376 --g~~----~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~~~~~~~~~~~~~~ 435 (710)
++. +.+..+|++..... +-+...|..++..+.+ .|+++ +|..+|++..+.- .+.+...
T Consensus 246 ~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~-~p~~~~l 323 (530)
T 2ooe_A 246 RTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL-LKKNMLL 323 (530)
T ss_dssp CCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT-CSSCHHH
T ss_pred cCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHh-CcccHHH
Confidence 222 47778898888763 3377888888888775 68877 8999999998632 1567889
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-
Q 005178 436 YTAMLNIYGSGGNVDNAIELFEEMSELGVAIN--VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSV- 512 (710)
Q Consensus 436 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~- 512 (710)
|..++..+.+.|++++|..+|+++++. .|+ ...|..++..+.+.|++++|..+|++.++.... +...|......
T Consensus 324 ~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~ 400 (530)
T 2ooe_A 324 YFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALME 400 (530)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHH
Confidence 999999999999999999999999984 443 358999999999999999999999999875322 23333322222
Q ss_pred HHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHHHHhc-cC---CCC--hhhHHHHHHHHHhCCCH
Q 005178 513 VSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDT-EV---DAR--RPFCNCLIDICRNRNLN 586 (710)
Q Consensus 513 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~~~-~~---~~~--~~~~~~l~~~~~~~g~~ 586 (710)
+...|+.++|.++|+.+.+..|++..++..++..+...| ..++|..++++. .. .|+ ..+|...+.....+|+.
T Consensus 401 ~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g-~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~ 479 (530)
T 2ooe_A 401 YYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLN-EDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 479 (530)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTT-CHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCH
T ss_pred HHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCC-CHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 346899999999999999999998888877777666656 567777777653 22 222 22888889999999999
Q ss_pred HHHHHHHHHHHHc
Q 005178 587 ERAHELLYLGTLY 599 (710)
Q Consensus 587 ~~A~~~~~~~~~~ 599 (710)
+.+..+++++.+.
T Consensus 480 ~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 480 ASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887643
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.82 E-value=1e-15 Score=166.26 Aligned_cols=353 Identities=12% Similarity=0.053 Sum_probs=171.1
Q ss_pred cHHHHHHHHHHHHc----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCH
Q 005178 186 ETIFYNVTMKSLRF----GRQFQLIEQLANEMVSNEIELDNITYSTIITCAKR----CNLFDEAIEWFERMYKTGLMPDE 257 (710)
Q Consensus 186 ~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~ 257 (710)
+...+..+...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|+++|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 34444444444444 445555555555554432 33444444444444 445555555555554432 34
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHH
Q 005178 258 VTYSAILDVYAK----SGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE----SGDYDGIRYVLQEMKSLGVQPNLVV 329 (710)
Q Consensus 258 ~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~ 329 (710)
..+..|...|.. .+++++|+..|++..+.| +...+..|...|.. .+++++|.+.|++..+.| +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 444444444444 445555555555554433 34444444444444 444555555555544432 3444
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 005178 330 YNTLLEAMGK----AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK----ARWAKDALELWERMRENKWPMDFILYN 401 (710)
Q Consensus 330 ~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~ 401 (710)
+..|...|.. .+++++|.+.|++..+.| +...+..+...|.. .+++++|...|++..+.| +...+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 259 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQF 259 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4444444444 445555555555544432 23344444444443 444555555555444432 233344
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHcCCCcCHHHHH
Q 005178 402 TLLNMCAD----IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG-----GNVDNAIELFEEMSELGVAINVMGCT 472 (710)
Q Consensus 402 ~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~ 472 (710)
.+...|.. .++.++|.+.|++..+.+ +...+..|...|... +++++|...|++..+.| +...+.
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 332 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG----NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQA 332 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT----CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHH
Confidence 44444444 444555555554444322 233444444444443 44555555554444432 233444
Q ss_pred HHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHhCCcHHHHHHHHHh
Q 005178 473 CLIQCLGKAR---RIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSL----CETSEDVGKVITCLQQANPKLVAFLNLIED 545 (710)
Q Consensus 473 ~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~ 545 (710)
.+...|...| +.++|++.|++..+.| +...+..|...|.. .++.++|.+.|+++.
T Consensus 333 ~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~--------------- 394 (490)
T 2xm6_A 333 NLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAA--------------- 394 (490)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH---------------
T ss_pred HHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH---------------
Confidence 4444444433 3444444444444432 33344444444444 344444444443332
Q ss_pred hcCCcccHHHHHHHHHHhccCCCChhhHHHHHHHHHh----CCCHHHHHHHHHHHHHcCC
Q 005178 546 NSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRN----RNLNERAHELLYLGTLYGL 601 (710)
Q Consensus 546 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 601 (710)
...+...+..|+.+|.+ .+++++|.+.|+++.+.+.
T Consensus 395 --------------------~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 395 --------------------EQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp --------------------HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred --------------------hCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 22344577788888888 8999999999999987763
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.81 E-value=1.5e-17 Score=170.24 Aligned_cols=292 Identities=9% Similarity=-0.098 Sum_probs=240.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005178 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368 (710)
Q Consensus 289 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 368 (710)
+.+...+..++..+...|++++|..+|+++.+.. +.+...+..++..+...|++++|..+++++.+.. +.+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 4567778888999999999999999999998764 3355567778889999999999999999998864 4467788889
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCC
Q 005178 369 IKIYGKAR-WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447 (710)
Q Consensus 369 i~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 447 (710)
...|...| ++++|...|++..+.... +...+..+...+...|++++|.+.|+++.+.. +.+...+..+...|...|
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM--KGCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHh
Confidence 99999999 999999999999987543 67789999999999999999999999999876 566778888999999999
Q ss_pred CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCCh
Q 005178 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRG--------VKPDDRLCGCLLSVVSLCETS 519 (710)
Q Consensus 448 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--------~~p~~~~~~~ll~~~~~~g~~ 519 (710)
++++|...++++.+... .+...+..+...|...|++++|+..|+++.+.. ...+..++..+..+|...|++
T Consensus 174 ~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 174 NSKLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp CHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 99999999999998643 367889999999999999999999999998631 123356888999999999999
Q ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHHHHh-ccCCCChh-hHHHHHHHH-HhCCCHH
Q 005178 520 EDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKD-TEVDARRP-FCNCLIDIC-RNRNLNE 587 (710)
Q Consensus 520 ~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~~-~~~~~~~~-~~~~l~~~~-~~~g~~~ 587 (710)
++|...++++.+..|++..++..++.++...| ..++|..++++ +...|+.. .+..+..++ ...|+.+
T Consensus 253 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMG-NFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHT-CHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHHHHhc-cHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 99999999999999998888888887776666 45556665554 55666544 666777766 4555544
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.80 E-value=9.1e-18 Score=175.05 Aligned_cols=289 Identities=13% Similarity=0.041 Sum_probs=197.7
Q ss_pred cCCHHHHHH-HHHHHHHcCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 005178 235 CNLFDEAIE-WFERMYKTGL---MPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDG 310 (710)
Q Consensus 235 ~g~~~~A~~-~~~~m~~~g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 310 (710)
.|++++|++ .|++..+... ..+...+..+...|.+.|++++|+..|+++++.. +.+..+|..+...|...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 456666666 5554443311 1123445666666777777777777777776653 3456666677777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH---------------HHHHHHhc
Q 005178 311 IRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA---------------LIKIYGKA 375 (710)
Q Consensus 311 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~---------------li~~~~~~ 375 (710)
|...|+++.+.. +.+..++..+...+...|++++|...|+++.+... .+...+.. .+..+...
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTP-AYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST-TTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 777777776643 23566677777777777777777777777766531 11111110 13333378
Q ss_pred CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 005178 376 RWAKDALELWERMRENKWPM-DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIE 454 (710)
Q Consensus 376 g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 454 (710)
|++++|+..|+++.+..... +..++..+...|...|++++|...|+++.+.. +.+..+|..+...|...|++++|..
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 88999999998888764332 57788888888999999999999999888765 5678888899999999999999999
Q ss_pred HHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----------CHHHHHHHHHHHHhcCChHHHHH
Q 005178 455 LFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP----------DDRLCGCLLSVVSLCETSEDVGK 524 (710)
Q Consensus 455 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p----------~~~~~~~ll~~~~~~g~~~~a~~ 524 (710)
.|+++.+... .+...+..+..+|.+.|++++|+..|+++++..... ...+|..+..+|...|++++|..
T Consensus 273 ~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 273 AYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 9999887543 357788888899999999999999998887532211 15688888999999999998888
Q ss_pred HHHHH
Q 005178 525 VITCL 529 (710)
Q Consensus 525 ~~~~~ 529 (710)
++++.
T Consensus 352 ~~~~~ 356 (368)
T 1fch_A 352 ADARD 356 (368)
T ss_dssp HHTTC
T ss_pred hHHHH
Confidence 77643
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.78 E-value=1.9e-17 Score=172.64 Aligned_cols=289 Identities=13% Similarity=-0.010 Sum_probs=201.7
Q ss_pred cCChHHHHH-HHHHHHHCCCC-C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 005178 200 GRQFQLIEQ-LANEMVSNEIE-L--DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEE 275 (710)
Q Consensus 200 ~g~~~~A~~-l~~~m~~~g~~-p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 275 (710)
.|++++|.. .|++....... | +...+..+...+.+.|++++|+..|+++.+.... +..++..+..+|.+.|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHH
Confidence 356666665 55544332110 1 2334555666666667777777777766665422 55666666666777777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH---------------HHHHHHHc
Q 005178 276 VLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNT---------------LLEAMGKA 340 (710)
Q Consensus 276 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~---------------li~~~~~~ 340 (710)
|+..|+++.+.. +.+..++..+...|...|++++|...++++.+.... +...+.. .+..+...
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 777777666543 345666666667777777777777777766664311 1111110 23334488
Q ss_pred CCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005178 341 GKPGLARSLFDEMVESGLT-PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419 (710)
Q Consensus 341 g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 419 (710)
|++++|...|+++.+.... ++..++..+...|.+.|++++|+..|+++.+... .+...+..+...|...|++++|...
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~ 273 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVAA 273 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999876421 1578888999999999999999999999887643 3678899999999999999999999
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc----------CHHHHHHHHHHHHhcCCHHHHHH
Q 005178 420 FEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI----------NVMGCTCLIQCLGKARRIDDLVR 489 (710)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p----------~~~~~~~li~~~~~~g~~~~A~~ 489 (710)
|+++.+.. +.+..++..+..+|...|++++|...|+++.+..... ...+|..+..+|.+.|+.++|..
T Consensus 274 ~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 274 YRRALELQ--PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 99998876 5778899999999999999999999999988743221 26889999999999999999998
Q ss_pred HHHHH
Q 005178 490 VFGVS 494 (710)
Q Consensus 490 ~~~~m 494 (710)
++++.
T Consensus 352 ~~~~~ 356 (368)
T 1fch_A 352 ADARD 356 (368)
T ss_dssp HHTTC
T ss_pred hHHHH
Confidence 88643
No 22
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.78 E-value=5.4e-16 Score=167.64 Aligned_cols=384 Identities=11% Similarity=0.018 Sum_probs=213.4
Q ss_pred CCcHHHHHHHHHHHHccCChHHHHHHHHHHHHC-----C---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----
Q 005178 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSN-----E---IELDNITYSTIITCAKRCNLFDEAIEWFERMYKT---- 251 (710)
Q Consensus 184 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 251 (710)
+.....||.+..++...|++++|++.|++.++. + ......+|+.+..+|...|++++|...|++..+.
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 334566777777777788888888777776531 0 1123456777777777777777777777666542
Q ss_pred -C-C-CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHCCC
Q 005178 252 -G-L-MPDEVTYSAILDVYAKSG--KVEEVLSLYERGVASGWKPDPIAFSVLGKM---FGESGDYDGIRYVLQEMKSLGV 323 (710)
Q Consensus 252 -g-~-~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~g~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~ 323 (710)
+ . .....++..+..++.+.| ++++|+..|++.++.. +-+...+..+..+ +...++.++|++.+++..+..
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~- 205 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN- 205 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-
Confidence 0 0 112445555555554433 4667777777666542 2234444444333 334455566666666665542
Q ss_pred CCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 005178 324 QPNLVVYNTLLEAMGK----AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399 (710)
Q Consensus 324 ~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 399 (710)
+.+..++..+...+.. .+++++|.+++++..... +.+...+..+...|...|++++|+..|++..+.... +..+
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~ 283 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYL 283 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHH
Confidence 2244445444444433 345566666666665543 334555666666666666666666666666654322 4445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 005178 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479 (710)
Q Consensus 400 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 479 (710)
+..+...|...+... .... ... ........+.+++|...+++..+.... +...+..+...|.
T Consensus 284 ~~~lg~~y~~~~~~~---------~~~~--~~~------~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~ 345 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQV---------MNLR--ENG------MYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHA 345 (472)
T ss_dssp HHHHHHHHHHHHHHH---------HHC--------------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh---------hhHH--HHH------HHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHH
Confidence 555544443211100 0000 000 000111123467888888888775432 4567888899999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHH
Q 005178 480 KARRIDDLVRVFGVSIDRGVKPDDR--LCGCLLS-VVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEE 556 (710)
Q Consensus 480 ~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~ll~-~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~ 556 (710)
..|++++|+..|++.++....+... .+..+.. .+.+.|+.++|+..|+++.++.|+.......+ ..
T Consensus 346 ~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~-----------~~ 414 (472)
T 4g1t_A 346 LADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMK-----------DK 414 (472)
T ss_dssp HTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHH-----------HH
T ss_pred HhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH-----------HH
Confidence 9999999999999998865443322 2333332 24578999999999999999999876543332 22
Q ss_pred HHHHHHh-ccCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 005178 557 FRNVIKD-TEVDAR-RPFCNCLIDICRNRNLNERAHELLYLGTLYG 600 (710)
Q Consensus 557 a~~~~~~-~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 600 (710)
+..+++. +...|+ ..+|..|+.+|...|++++|++.|+++++.+
T Consensus 415 l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 415 LQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 2333322 333443 4489999999999999999999999988654
No 23
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.78 E-value=3.5e-15 Score=163.75 Aligned_cols=364 Identities=10% Similarity=0.109 Sum_probs=270.2
Q ss_pred hccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHHcCCHHHH
Q 005178 163 SLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIIT-CAKRCNLFDEA 241 (710)
Q Consensus 163 ~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~-~~~~~g~~~~A 241 (710)
..++++.|+.+|+.+... .|.+...|...+..+.+.|++++|..+|++++.. .|+...|...+. .....|+.++|
T Consensus 24 ~~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~~~~~~~~~~~a 99 (530)
T 2ooe_A 24 QNQPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSYVRETKGKLPSY 99 (530)
T ss_dssp HSSCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHHHHHHTTTSTTH
T ss_pred HhCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHccchhhH
Confidence 356799999999999877 5778899999999999999999999999999986 468888888776 33456777766
Q ss_pred HH----HHHHHHHc-CCCC-CHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----
Q 005178 242 IE----WFERMYKT-GLMP-DEVTYSAILDVYAK---------SGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF---- 302 (710)
Q Consensus 242 ~~----~~~~m~~~-g~~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~---- 302 (710)
.+ +|++.... |..| +...|...+....+ .|+++.|..+|++.++.........|.......
T Consensus 100 ~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~ 179 (530)
T 2ooe_A 100 KEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGIN 179 (530)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhc
Confidence 65 77777654 5443 56788888887665 789999999999999831111123444332211
Q ss_pred ---------HhcCCHHHHHHHHHHHH------HCC---CCCC--------HHHHHHHHHHHHHc----CCH----HHHHH
Q 005178 303 ---------GESGDYDGIRYVLQEMK------SLG---VQPN--------LVVYNTLLEAMGKA----GKP----GLARS 348 (710)
Q Consensus 303 ---------~~~g~~~~A~~~~~~m~------~~g---~~p~--------~~~~~~li~~~~~~----g~~----~~A~~ 348 (710)
.+.++++.|..++.++. +.. ++|+ ...|...+...... ++. ..+..
T Consensus 180 ~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~ 259 (530)
T 2ooe_A 180 IHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMF 259 (530)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHH
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHH
Confidence 13456788888777642 111 2343 24566555443332 222 47788
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 005178 349 LFDEMVESGLTPDEKTLTALIKIYGK-------ARWAK-------DALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414 (710)
Q Consensus 349 ~~~~m~~~g~~p~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 414 (710)
+|++.+... +.+...|..++..+.+ .|+++ +|..+|++..+.-.+-+...|..++..+.+.|+++
T Consensus 260 ~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~ 338 (530)
T 2ooe_A 260 AYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYE 338 (530)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHH
Confidence 999988753 4567888888888775 68876 89999999986323346889999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHH-HHhcCCHHHHHHHHH
Q 005178 415 EAERLFEDMKLSDYCKPDN-YSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC-LGKARRIDDLVRVFG 492 (710)
Q Consensus 415 ~A~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~ 492 (710)
+|..+|+++.+.. +.+. ..|..++..+.+.|++++|..+|++..+.... +...|...+.. +...|+.++|..+|+
T Consensus 339 ~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e 415 (530)
T 2ooe_A 339 KVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFE 415 (530)
T ss_dssp HHHHHHHHHHHSS--SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHhCcc--ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHH
Confidence 9999999999864 3343 58999999999999999999999999885322 33444333322 346899999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCc
Q 005178 493 VSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPK 535 (710)
Q Consensus 493 ~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 535 (710)
+.++... -+...|..++..+.+.|+.++|..+|+++....|.
T Consensus 416 ~al~~~p-~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~ 457 (530)
T 2ooe_A 416 LGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 457 (530)
T ss_dssp HHHHHHT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCS
T ss_pred HHHHHCC-CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCC
Confidence 9987432 25778999999999999999999999999987654
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.78 E-value=9.5e-18 Score=174.88 Aligned_cols=265 Identities=14% Similarity=0.049 Sum_probs=185.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005178 257 EVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA 336 (710)
Q Consensus 257 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 336 (710)
...+..+...+.+.|++++|+.+|+++++.. +.+..+|..+...|...|++++|+..|+++.+.. +.+..+|..+..+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3446667777777777777777777777653 4456777777777777777777777777777653 2356677777777
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHH
Q 005178 337 MGKAGKPGLARSLFDEMVESGLTPD-----------EKTLTALIKIYGKARWAKDALELWERMRENKWP-MDFILYNTLL 404 (710)
Q Consensus 337 ~~~~g~~~~A~~~~~~m~~~g~~p~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li 404 (710)
|...|++++|...|+++.+.. |+ ...+..+...|.+.|++++|+.+|+++.+.... .+..++..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 777777777777777776542 21 223344567778888888888888888776432 1577888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCH
Q 005178 405 NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484 (710)
Q Consensus 405 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 484 (710)
..|...|++++|++.|+++.+.. +.+..+|..+..+|...|++++|...|+++.+.... +..+|..+..+|.+.|++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVR--PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCC
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCH
Confidence 88888888888888888888765 567888888888888888888888888888775422 477788888888888888
Q ss_pred HHHHHHHHHHHHCCCC-----------CCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 005178 485 DDLVRVFGVSIDRGVK-----------PDDRLCGCLLSVVSLCETSEDVGKVITC 528 (710)
Q Consensus 485 ~~A~~~~~~m~~~~~~-----------p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 528 (710)
++|+..|+++++.... .+..+|..+..++...|+.+.+.++.+.
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 8888888888753211 0245777788888888887776665443
No 25
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=6.7e-18 Score=172.89 Aligned_cols=289 Identities=12% Similarity=0.134 Sum_probs=138.9
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 005178 157 ALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCN 236 (710)
Q Consensus 157 ~~~~l~~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g 236 (710)
+..++..+++.++|.++++++. +..+|..++.++.+.|++++|++.|.+. +|..+|..++.++...|
T Consensus 9 ~~~ll~~~~~ld~A~~fae~~~-------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g 75 (449)
T 1b89_A 9 VQVLIEHIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSG 75 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHccCHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCC
Confidence 3455677888999999999872 2348999999999999999999999653 47789999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005178 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQ 316 (710)
Q Consensus 237 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 316 (710)
++++|+..++...+. .++..+.+.++.+|.+.|+++++.++++ .|+..+|+.++..|...|++++|...|.
T Consensus 76 ~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~ 146 (449)
T 1b89_A 76 NWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYN 146 (449)
T ss_dssp -----------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999988777664 4567889999999999999999988884 3777899999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 005178 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMD 396 (710)
Q Consensus 317 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 396 (710)
.+ ..|..++.++.+.|++++|.+.++++ .+..+|..++.+|...|+++.|......+ ..+
T Consensus 147 ~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ 206 (449)
T 1b89_A 147 NV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVH 206 (449)
T ss_dssp HT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTC
T ss_pred Hh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhC
Confidence 77 36889999999999999999999998 27889999999999999999996655442 234
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHcCCCc------CH
Q 005178 397 FILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG--GNVDNAIELFEEMSELGVAI------NV 468 (710)
Q Consensus 397 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~p------~~ 468 (710)
+.-...++..|.+.|.+++|..+++...... +-....|+-|.-+|++- +++.+.++.|..- .+++| +.
T Consensus 207 ad~l~~lv~~Yek~G~~eEai~lLe~aL~le--~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~ 282 (449)
T 1b89_A 207 ADELEELINYYQDRGYFEELITMLEAALGLE--RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQA 282 (449)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTST--TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTT
T ss_pred HhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHH
Confidence 4456678999999999999999999998766 57788888888888774 4555666655422 12322 45
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHH
Q 005178 469 MGCTCLIQCLGKARRIDDLVRVF 491 (710)
Q Consensus 469 ~~~~~li~~~~~~g~~~~A~~~~ 491 (710)
..|..++-.|.+.+++|.|....
T Consensus 283 ~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 283 HLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp TCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhhchHHHHHHHH
Confidence 67899999999999999988744
No 26
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.77 E-value=1.4e-14 Score=164.66 Aligned_cols=372 Identities=11% Similarity=0.067 Sum_probs=249.3
Q ss_pred HHhccCHHHHHHHHHHHHhCCC-CCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 005178 161 LNSLKFWQKSYFFFNWIKSQNL-FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFD 239 (710)
Q Consensus 161 l~~l~~~~~A~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 239 (710)
+...+.+.+|+.+++++...+. +..+....+.++.+..+. +..+..+...+.... + ...+...+...|.++
T Consensus 995 f~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai~lglyE 1066 (1630)
T 1xi4_A 995 FMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAISNELFE 1066 (1630)
T ss_pred HHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHHhCCCHH
Confidence 3344456677777776653322 234455566666555555 334444444333311 1 233455666777777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005178 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMK 319 (710)
Q Consensus 240 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 319 (710)
+|..+|++.. -.....+.++. ..+++++|.+++++. -+..+|..+..++...|++++|+..|.+.
T Consensus 1067 EAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA- 1131 (1630)
T 1xi4_A 1067 EAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA- 1131 (1630)
T ss_pred HHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-
Confidence 8877777752 12222233322 567777777777755 24677778888888888888888887553
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 005178 320 SLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399 (710)
Q Consensus 320 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 399 (710)
-|...|..++.+|.+.|++++|.+.|...++.. ++....+.++.+|++.+++++...+. + .++...
T Consensus 1132 -----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad 1197 (1630)
T 1xi4_A 1132 -----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAH 1197 (1630)
T ss_pred -----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHH
Confidence 366677778888888888888888887766653 33333344777788887777533332 1 235556
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 005178 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479 (710)
Q Consensus 400 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 479 (710)
|..+...|...|++++|..+|... ..|..+..+|.+.|++++|.+.+++. .+..+|..+..+|.
T Consensus 1198 ~~~iGd~le~eg~YeeA~~~Y~kA----------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acv 1261 (1630)
T 1xi4_A 1198 IQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACV 1261 (1630)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhh----------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHh
Confidence 667778888888888888888774 26778888888888888888888766 35678888888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcC--CcccHHHHH
Q 005178 480 KARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNST--GFENIKEEF 557 (710)
Q Consensus 480 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~--~~~~~~~~a 557 (710)
..|++..|...... +..+...+..++..|.+.|.+++|+.+++...+++|.+..+.+-|+..+. ..++..+.+
T Consensus 1262 e~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhl 1336 (1630)
T 1xi4_A 1262 DGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHL 1336 (1630)
T ss_pred hhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHH
Confidence 88888777776543 33356677789999999999999999999999999988888876765443 334344444
Q ss_pred HHHHHhccCCC------ChhhHHHHHHHHHhCCCHHHHH
Q 005178 558 RNVIKDTEVDA------RRPFCNCLIDICRNRNLNERAH 590 (710)
Q Consensus 558 ~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~ 590 (710)
+.+..++...+ ....|.-++-.|.+.|+++.|.
T Consensus 1337 k~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1337 ELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 44445555444 2337999999999999999997
No 27
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=1.2e-17 Score=170.99 Aligned_cols=347 Identities=12% Similarity=0.098 Sum_probs=168.8
Q ss_pred HccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005178 198 RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL 277 (710)
Q Consensus 198 ~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 277 (710)
-+.|++++|.++++++. +..+|..+..++.+.|++++|++.|.+. +|..+|..++..+...|++++|+
T Consensus 14 ~~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 47788999999999983 3359999999999999999999999653 47789999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 005178 278 SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357 (710)
Q Consensus 278 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 357 (710)
..++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|..+|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 988887764 4667889999999999999999998884 377789999999999999999999999977
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHH
Q 005178 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYT 437 (710)
Q Consensus 358 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 437 (710)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+. .++.-..
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~------~~ad~l~ 211 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV------VHADELE 211 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT------TCHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH------hCHhhHH
Confidence 36999999999999999999999998 288999999999999999999966655432 3444455
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCC------CHHHHHHH
Q 005178 438 AMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK--ARRIDDLVRVFGVSIDRGVKP------DDRLCGCL 509 (710)
Q Consensus 438 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~p------~~~~~~~l 509 (710)
.++..|.+.|++++|+.+++...... +-....|+-|..+|++ -++..+.++.|.. ..++.| +...|..+
T Consensus 212 ~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~ 288 (449)
T 1b89_A 212 ELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAEL 288 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHH
Confidence 79999999999999999999998755 4467788888888876 4556666766653 222322 33467888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHHHHhccCCCChhhHHHHHHHHHhCCCHHHH
Q 005178 510 LSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERA 589 (710)
Q Consensus 510 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 589 (710)
+..|.+.++++.|...+-.-...-=++..|.+++..... .+-..+.+.-++.. .| ...+-|+.++...=+..++
T Consensus 289 ~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n-~elyYkai~fyl~~---~p--~~l~~ll~~l~~~ld~~r~ 362 (449)
T 1b89_A 289 VFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVAN-VELYYRAIQFYLEF---KP--LLLNDLLMVLSPRLDHTRA 362 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSS-THHHHHHHHHHHHH---CG--GGHHHHHHHHGGGCCHHHH
T ss_pred HHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhH-HHHHHHHHHHHHhc---CH--HHHHHHHHHHHhccCcHHH
Confidence 888888888888876432221111234556666654321 12123333333422 22 2567777777777777777
Q ss_pred HHHHHH
Q 005178 590 HELLYL 595 (710)
Q Consensus 590 ~~~~~~ 595 (710)
.++|++
T Consensus 363 v~~~~~ 368 (449)
T 1b89_A 363 VNYFSK 368 (449)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777764
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.76 E-value=1.1e-16 Score=166.90 Aligned_cols=265 Identities=11% Similarity=-0.045 Sum_probs=176.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005178 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303 (710)
Q Consensus 224 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 303 (710)
.|..+...+.+.|++++|+++|+++.+.... +..+|..+..+|.+.|++++|+..|+++.+.. +.+..+|..+...|.
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYT 144 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 3455555555566666666666665554322 45556666666666666666666666665542 334555666666666
Q ss_pred hcCCHHHHHHHHHHHHHCCCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHH
Q 005178 304 ESGDYDGIRYVLQEMKSLGVQ---------PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT-PDEKTLTALIKIYG 373 (710)
Q Consensus 304 ~~g~~~~A~~~~~~m~~~g~~---------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~ 373 (710)
..|++++|..+|+++.+.... .....+..+...+...|++++|..+|+++.+.... .+..++..+...|.
T Consensus 145 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 224 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH 224 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence 666666666666666543100 01223344567777788888888888888775311 15777888888888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 005178 374 KARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAI 453 (710)
Q Consensus 374 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 453 (710)
+.|++++|+..|+++.+... .+..+|..+..+|...|++++|+..|+++.+.. +.+..+|..+..+|...|++++|.
T Consensus 225 ~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 225 LSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ--PGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCCCHHHHH
Confidence 88888888888888877643 367888888899999999999999999888775 567888999999999999999999
Q ss_pred HHHHHHHHcCCC-----------cCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005178 454 ELFEEMSELGVA-----------INVMGCTCLIQCLGKARRIDDLVRVFGV 493 (710)
Q Consensus 454 ~~~~~m~~~~~~-----------p~~~~~~~li~~~~~~g~~~~A~~~~~~ 493 (710)
..|+++.+.... .+...|..+..++...|+.+.+..+.++
T Consensus 302 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999998763211 1367899999999999999988887754
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.75 E-value=1.7e-16 Score=162.11 Aligned_cols=278 Identities=10% Similarity=-0.015 Sum_probs=165.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005178 225 YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304 (710)
Q Consensus 225 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 304 (710)
+..+...+...|++++|+.+|+++.+.... +...+..+..+|.+.|++++|...|+++.+.. +.+..++..+...|..
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence 334444555555555555555555554322 44455555555555555555555555555432 2234445555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HH-HHHhcCCHHHHH
Q 005178 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL-IK-IYGKARWAKDAL 382 (710)
Q Consensus 305 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-i~-~~~~~g~~~~A~ 382 (710)
.|++++|...++++.+.... +...+..++.. .++......+ .. .+...|++++|.
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~A~ 158 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQ-YEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYRECR 158 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHHHHH
Confidence 55555555555555443210 11111111000 0000001111 11 256667778888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 005178 383 ELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462 (710)
Q Consensus 383 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 462 (710)
..++++.+.... +...+..+...|...|++++|.+.++++.+.. +.+..++..+...|...|++++|...|+++.+.
T Consensus 159 ~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 235 (327)
T 3cv0_A 159 TLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR--PDDAQLWNKLGATLANGNRPQEALDAYNRALDI 235 (327)
T ss_dssp HHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 888877765433 67777778888888888888888888877765 566778888888888888888888888887775
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005178 463 GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP-----------DDRLCGCLLSVVSLCETSEDVGKVITCLQQ 531 (710)
Q Consensus 463 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-----------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 531 (710)
.. .+...|..+..+|.+.|++++|+..|+++.+..... +...|..+..++...|++++|..++++..+
T Consensus 236 ~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 236 NP-GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred CC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 42 256777888888888888888888888877532221 355777788888888888888877765433
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.75 E-value=6.6e-16 Score=154.84 Aligned_cols=262 Identities=12% Similarity=0.122 Sum_probs=185.2
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 005178 267 YAKSGKVEEVLSLYERGVASGWKPDP--IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344 (710)
Q Consensus 267 ~~~~g~~~~A~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 344 (710)
....|++..|+..++..... .|+. .....+..+|...|++++|+..++.. -+|+..++..+...+...++.+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHH
Confidence 34567777777777665432 2332 34455667777777777777655441 2455667777777777777788
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005178 345 LARSLFDEMVESGLTP-DEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423 (710)
Q Consensus 345 ~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 423 (710)
+|++.++++...+..| +...+..+..+|.+.|++++|++.+++ +.+...+..++..|.+.|++++|.+.|+++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8888887777665434 455566666777788888888887776 346777778888888888888888888888
Q ss_pred HhCCCCCCCHHH--HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 005178 424 KLSDYCKPDNYS--YTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501 (710)
Q Consensus 424 ~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 501 (710)
.+.. +.+... ...++..+...|++++|..+|+++.+.. +.+...|+.+..++.+.|++++|+..|+++++....
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~- 232 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG- 232 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Confidence 7764 223211 1233444555688889999998888763 347788888888889999999999999888874322
Q ss_pred CHHHHHHHHHHHHhcCChHH-HHHHHHHHHHhCCcHHHHHHHHH
Q 005178 502 DDRLCGCLLSVVSLCETSED-VGKVITCLQQANPKLVAFLNLIE 544 (710)
Q Consensus 502 ~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~L~ 544 (710)
+..++..++.++...|+.++ +.++++++.+++|++..+.++..
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~~~ 276 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRA 276 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 56678888888888888865 56888899999999887776543
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.74 E-value=6.4e-16 Score=157.87 Aligned_cols=280 Identities=13% Similarity=-0.060 Sum_probs=206.5
Q ss_pred cHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005178 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265 (710)
Q Consensus 186 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 265 (710)
+...+..+...+...|++++|..+|+++.+.. +.+...|..+..++...|++++|.+.|+++.+... .+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHH
Confidence 34456778889999999999999999998864 23778888899999999999999999999998753 37889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHHcCCH
Q 005178 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLE--AMGKAGKP 343 (710)
Q Consensus 266 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~--~~~~~g~~ 343 (710)
.|...|++++|+..|+++.+.. +.+...+..++..+ |+......+.. .+...|++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS-TTTTTC------------------------------------------CCTTSHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccH
Confidence 9999999999999999999863 22233333221100 11111112212 25556667
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005178 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423 (710)
Q Consensus 344 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 423 (710)
++|...++++.+.. +.+...+..+...|.+.|++++|...++++.+... .+...+..+...|...|++++|.+.|+++
T Consensus 155 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 155 RECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777777766553 33566677777777777777777777777776532 25677888888888888888888888888
Q ss_pred HhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc-----------CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005178 424 KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI-----------NVMGCTCLIQCLGKARRIDDLVRVFG 492 (710)
Q Consensus 424 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-----------~~~~~~~li~~~~~~g~~~~A~~~~~ 492 (710)
.+.. +.+..++..+...|...|++++|...|+++.+..... +...|..+..+|.+.|++++|..+++
T Consensus 233 ~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 233 LDIN--PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHcC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 7765 5678888888999999999999999998887743321 46788889999999999999998886
Q ss_pred HH
Q 005178 493 VS 494 (710)
Q Consensus 493 ~m 494 (710)
+.
T Consensus 311 ~~ 312 (327)
T 3cv0_A 311 QN 312 (327)
T ss_dssp CC
T ss_pred HH
Confidence 54
No 32
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.74 E-value=4.2e-15 Score=160.60 Aligned_cols=372 Identities=7% Similarity=-0.053 Sum_probs=232.1
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCC-------CCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHC-----C-CC-CCH
Q 005178 157 ALLILNSLKFWQKSYFFFNWIKSQN-------LFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSN-----E-IE-LDN 222 (710)
Q Consensus 157 ~~~~l~~l~~~~~A~~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g-~~-p~~ 222 (710)
.-.++...+++++|+..|++..+.. ..+....+|+.+..+|...|++++|...+++..+. + .. ...
T Consensus 57 Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~ 136 (472)
T 4g1t_A 57 LAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESP 136 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhH
Confidence 3456667789999999999875421 12345678999999999999999999999988652 1 11 134
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---HHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 005178 223 ITYSTIITCAKRC--NLFDEAIEWFERMYKTGLMPDEVTYSAILDVY---AKSGKVEEVLSLYERGVASGWKPDPIAFSV 297 (710)
Q Consensus 223 ~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 297 (710)
.++..+..++... +++++|++.|++..+.... +...+..+..++ ...++.++|++.|++.++.. +.+..++..
T Consensus 137 ~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~ 214 (472)
T 4g1t_A 137 ELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVL 214 (472)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHH
T ss_pred HHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHH
Confidence 6666666566554 4799999999999987533 566666665553 45678889999999988764 445667766
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005178 298 LGKMFGE----SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYG 373 (710)
Q Consensus 298 li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 373 (710)
+...+.. .|++++|.+++++..... +.+..++..+...|...|++++|...|++..+.. +.+..++..+...|.
T Consensus 215 l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~ 292 (472)
T 4g1t_A 215 LALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYR 292 (472)
T ss_dssp HHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHH
Confidence 6655554 467889999999988764 3467789999999999999999999999998764 345667777776664
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 005178 374 KARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAI 453 (710)
Q Consensus 374 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 453 (710)
..+.... ... ...........+..+.|...|+...+.. +.+..++..+...|...|++++|.
T Consensus 293 ~~~~~~~---------~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~lg~~~~~~~~~~~A~ 354 (472)
T 4g1t_A 293 AKVFQVM---------NLR-------ENGMYGKRKLLELIGHAVAHLKKADEAN--DNLFRVCSILASLHALADQYEEAE 354 (472)
T ss_dssp HHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHC--TTTCCCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHhh---------hHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcC--CchhhhhhhHHHHHHHhccHHHHH
Confidence 3221110 000 0000011111223566666676666654 445556666777777777777777
Q ss_pred HHHHHHHHcCCCcCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005178 454 ELFEEMSELGVAINVM--GCTCLIQ-CLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQ 530 (710)
Q Consensus 454 ~~~~~m~~~~~~p~~~--~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 530 (710)
..|++.++....+... .+..+.. .+...|+.++|+..|++.++ +.|+...... ....+.++++...
T Consensus 355 ~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~~---------~~~~l~~~~~~~l 423 (472)
T 4g1t_A 355 YYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKEK---------MKDKLQKIAKMRL 423 (472)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHHH---------HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHH---------HHHHHHHHHHHHH
Confidence 7777776644332211 1222222 23356777777777777766 3343322211 1234455566666
Q ss_pred HhCCcHHHHHHHHHhhcCCcccHHHHHHHHHH
Q 005178 531 QANPKLVAFLNLIEDNSTGFENIKEEFRNVIK 562 (710)
Q Consensus 531 ~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~ 562 (710)
+.+|++..++..||.++...| ..++|.++++
T Consensus 424 ~~~p~~~~~~~~LG~~~~~~g-~~~~A~~~y~ 454 (472)
T 4g1t_A 424 SKNGADSEALHVLAFLQELNE-KMQQADEDSE 454 (472)
T ss_dssp HHCC-CTTHHHHHHHHHHHHH-HCC-------
T ss_pred HhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHH
Confidence 667777666666766655555 3344444443
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.74 E-value=7.3e-16 Score=154.54 Aligned_cols=250 Identities=14% Similarity=0.076 Sum_probs=151.1
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005178 232 AKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGI 311 (710)
Q Consensus 232 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 311 (710)
....|++..|+..++++..............+..+|...|+++.|+..++.. -+|+..++..+...+...|+.++|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHH
Confidence 3345666666666655433211111233444556666666666666554331 244555666666666666667777
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005178 312 RYVLQEMKSLGVQP-NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390 (710)
Q Consensus 312 ~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 390 (710)
++.++++...+..| +...+..+..++...|++++|++.|++ +.+...+..++..|.+.|++++|.+.|+++.+
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77776666554333 344555556666667777777766665 34556666666677777777777777777666
Q ss_pred CCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcC
Q 005178 391 NKWPMDFILY---NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467 (710)
Q Consensus 391 ~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 467 (710)
.. |+.... ..++..+...|++++|..+|+++.+.. +.+...|+.+..+|.+.|++++|...|+++++.... +
T Consensus 159 ~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~-~ 233 (291)
T 3mkr_A 159 QD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC--SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG-H 233 (291)
T ss_dssp HC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C
T ss_pred hC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-C
Confidence 53 232111 122233334467777777777777664 566777777777777777777777777777665432 5
Q ss_pred HHHHHHHHHHHHhcCCHHH-HHHHHHHHHH
Q 005178 468 VMGCTCLIQCLGKARRIDD-LVRVFGVSID 496 (710)
Q Consensus 468 ~~~~~~li~~~~~~g~~~~-A~~~~~~m~~ 496 (710)
..++..++..+...|+.++ +.++++++++
T Consensus 234 ~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 234 PETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 6677777777777777755 4567777665
No 34
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.72 E-value=4.8e-18 Score=187.03 Aligned_cols=115 Identities=16% Similarity=0.110 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005178 293 IAFSVLGKMFGESGDYDGIRYVLQEMKS---LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369 (710)
Q Consensus 293 ~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 369 (710)
.+||+||++|++.|++++|.++|++|.+ .|+.||.+|||+||++||+.|++++|.++|++|.+.|+.||.+||++||
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 3444555555555555555555444432 2444555555555555555555555555555555555555555555555
Q ss_pred HHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005178 370 KIYGKARW-AKDALELWERMRENKWPMDFILYNTLLNMC 407 (710)
Q Consensus 370 ~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 407 (710)
.++++.|+ .++|.++|++|.+.|+.||.++|+.++.++
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~ 246 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE 246 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChh
Confidence 55555444 244445555555555555555555444433
No 35
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.70 E-value=2.5e-17 Score=181.40 Aligned_cols=117 Identities=15% Similarity=0.198 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005178 223 ITYSTIITCAKRCNLFDEAIEWFERMYK---TGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299 (710)
Q Consensus 223 ~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 299 (710)
.|||++|.+|++.|++++|.++|++|.+ .|+.||+.|||+||++||+.|++++|.++|++|.+.|+.||.+|||+||
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 4566666666666666666666655442 3555566666666666666666666666666665555556666666666
Q ss_pred HHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 005178 300 KMFGESGD-YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339 (710)
Q Consensus 300 ~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 339 (710)
.++++.|+ .++|.++|++|.+.|+.||..+|+.++.++.+
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 65555555 34555556666555555565555555544433
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.69 E-value=8.6e-15 Score=143.81 Aligned_cols=238 Identities=13% Similarity=0.094 Sum_probs=155.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCC----HHHHHH
Q 005178 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG--LTPD----EKTLTA 367 (710)
Q Consensus 294 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~~~~~ 367 (710)
.|..+...+...|++++|..+|+++.+.. .+..+|..+..++...|++++|...|+++.+.. ..++ ...+..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34445555555555555555555555443 344555555555555555555555555554321 0111 345555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCC
Q 005178 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447 (710)
Q Consensus 368 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 447 (710)
+...|...|++++|...|++..+.. |+ ...+...|++++|...++++.... +.+...+..+...|...|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~-------~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RT-------ADILTKLRNAEKELKKAEAEAYVN--PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CC-------HHHHHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--ch-------hHHHHHHhHHHHHHHHHHHHHHcC--cchHHHHHHHHHHHHHhc
Confidence 6666666666666666666666532 22 134555667777777777777654 455667777888888888
Q ss_pred CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 005178 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVIT 527 (710)
Q Consensus 448 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 527 (710)
++++|...|+++.+.... +...|..+..+|.+.|++++|+..|+++++... .+...|..+..+|...|++++|.+.++
T Consensus 154 ~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 888888888888775432 577788888888888888888888888876432 246677788888888888888888888
Q ss_pred HHHHhC------CcHHHHHHHHHhh
Q 005178 528 CLQQAN------PKLVAFLNLIEDN 546 (710)
Q Consensus 528 ~~~~~~------p~~~~~~~~L~~~ 546 (710)
++.++. |++..+...|..+
T Consensus 232 ~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 232 AARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHhChhhcCCCchHHHHHHHHHh
Confidence 888777 7777777666654
No 37
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.69 E-value=6.9e-13 Score=151.00 Aligned_cols=329 Identities=12% Similarity=0.127 Sum_probs=241.0
Q ss_pred HHHHhhCCCCCCHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC
Q 005178 142 LRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELD 221 (710)
Q Consensus 142 ~~~l~~~~~~~~~~~~~~~l~~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 221 (710)
...+..+. .-...+...++..++.+++|..+|+++. ......+.++. ..+++++|.+++++. -+
T Consensus 1041 ~eyI~kLd-~~d~~eIA~Iai~lglyEEAf~IYkKa~------~~~~A~~VLie---~i~nldrAiE~Aerv------n~ 1104 (1630)
T 1xi4_A 1041 MEYINRLD-NYDAPDIANIAISNELFEEAFAIFRKFD------VNTSAVQVLIE---HIGNLDRAYEFAERC------NE 1104 (1630)
T ss_pred HHHHHHhh-hccHHHHHHHHHhCCCHHHHHHHHHHcC------CHHHHHHHHHH---HHhhHHHHHHHHHhc------CC
Confidence 33333333 3345566677778888899998888762 12222333332 677888888888755 25
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005178 222 NITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKM 301 (710)
Q Consensus 222 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 301 (710)
..+|..+..++...|++++|++.|.+. -|...|..++.+|.+.|++++|.+.|....+.. ++....+.++.+
T Consensus 1105 p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~Lafa 1176 (1630)
T 1xi4_A 1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFA 1176 (1630)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHH
Confidence 678888888999999999999988664 377888888999999999999999998877653 444444458888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005178 302 FGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381 (710)
Q Consensus 302 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 381 (710)
|++.+++++.... .+ .++...|..+...|...|++++|..+|... ..|..+...|.+.|++++|
T Consensus 1177 YAKl~rleele~f----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~A 1240 (1630)
T 1xi4_A 1177 LAKTNRLAELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAA 1240 (1630)
T ss_pred HHhhcCHHHHHHH----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHH
Confidence 8888888854433 22 356677778888899999999999999885 3688889999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 005178 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461 (710)
Q Consensus 382 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (710)
.+.+++.. +..+|..+..+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++..+.
T Consensus 1241 IEaarKA~------n~~aWkev~~acve~~Ef~LA~~cgl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~ 1308 (1630)
T 1xi4_A 1241 VDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALG 1308 (1630)
T ss_pred HHHHHHhC------CHHHHHHHHHHHhhhhHHHHHHHHHHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99888773 6688888888888899988888876653 34566777888899999999999999988776
Q ss_pred cCCCcCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCChHHHHHH
Q 005178 462 LGVAINVMGCTCLIQCLGK--ARRIDDLVRVFGVSIDRGVKP------DDRLCGCLLSVVSLCETSEDVGKV 525 (710)
Q Consensus 462 ~~~~p~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~p------~~~~~~~ll~~~~~~g~~~~a~~~ 525 (710)
.. +-....|+-+...|++ -++..+++++|..-. ++.+ +...|..++..|.+.|+++.|...
T Consensus 1309 Le-raH~gmftELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1309 LE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred cC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 44 2345567666666665 445666777776432 2322 345788888888888888888753
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.64 E-value=7.6e-14 Score=136.95 Aligned_cols=224 Identities=12% Similarity=0.016 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----HHHHH
Q 005178 258 VTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGV--QPN----LVVYN 331 (710)
Q Consensus 258 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~~~~ 331 (710)
..+..+...+...|++++|+..|+++.+.. .+...|..+..+|...|++++|...+++..+... .++ ..+|.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 344555555555555555555555555544 4455555555555556666666655555544210 111 34566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 005178 332 TLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411 (710)
Q Consensus 332 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 411 (710)
.+...+...|++++|...|+++.+. .|+. ..+.+.|++++|...++.+...... +...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhc
Confidence 6666666666666666666666654 2332 2345556677777777777665222 4556667777777778
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005178 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491 (710)
Q Consensus 412 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 491 (710)
++++|...|+++.+.. +.+...|..+..+|...|++++|...|+++.+... .+...|..+..+|.+.|++++|+..|
T Consensus 154 ~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 8888888887777765 45677777788888888888888888888777542 25677777778888888888888888
Q ss_pred HHHHH
Q 005178 492 GVSID 496 (710)
Q Consensus 492 ~~m~~ 496 (710)
++..+
T Consensus 231 ~~a~~ 235 (258)
T 3uq3_A 231 DAART 235 (258)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77765
No 39
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.63 E-value=8.2e-14 Score=138.17 Aligned_cols=249 Identities=10% Similarity=0.005 Sum_probs=181.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHH
Q 005178 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD--EKTLTALIKI 371 (710)
Q Consensus 294 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~ 371 (710)
.+......+...|++++|+.+|+++.+.. +.+...+..+..++...|++++|+..|+++.+....++ ...|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 34455566677777777777777776643 12344666677777777777777777777776321111 2346777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHH
Q 005178 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDN 451 (710)
Q Consensus 372 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 451 (710)
|...|++++|+..|++..+.... +...+..+...|...|++++|.+.|++..+.. +.+...|..+...+...+++++
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT--TTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS--CCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC--CCcHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888887775433 56778888888888999999999998888765 5677888888834444559999
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhcCChHH
Q 005178 452 AIELFEEMSELGVAINVMGCTCLIQCLGKARR---IDDLVRVFGVSIDRG-VKPD------DRLCGCLLSVVSLCETSED 521 (710)
Q Consensus 452 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~-~~p~------~~~~~~ll~~~~~~g~~~~ 521 (710)
|...|+++.+.... +...+..+..++...|+ +++|+..|+++++.. -.|+ ..+|..+...|...|++++
T Consensus 161 A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 161 ADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999998885432 46777788888888888 888888888887531 1233 2477788899999999999
Q ss_pred HHHHHHHHHHhCCcHHHHHHHHHhhc
Q 005178 522 VGKVITCLQQANPKLVAFLNLIEDNS 547 (710)
Q Consensus 522 a~~~~~~~~~~~p~~~~~~~~L~~~~ 547 (710)
|.+.++++.+++|++..+...++...
T Consensus 240 A~~~~~~al~~~p~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 240 ADAAWKNILALDPTNKKAIDGLKMKL 265 (272)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHC---
T ss_pred HHHHHHHHHhcCccHHHHHHHhhhhh
Confidence 99999999999999999888887643
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.60 E-value=1.1e-13 Score=132.29 Aligned_cols=196 Identities=16% Similarity=0.085 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005178 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407 (710)
Q Consensus 328 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 407 (710)
..+..+...+.+.|++++|...|++.++.. +.+...+..+..++.+.|++++|+..|++..+.... +...+..+..+|
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~ 83 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLSEAY 83 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 344444444444444444444444444332 223344444444444444444444444444443221 334444444444
Q ss_pred HHc-----------CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 005178 408 ADI-----------GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476 (710)
Q Consensus 408 ~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 476 (710)
... |++++|+..|++..+.. +.+...|..+..+|...|++++|+..|+++++.. .+...+..+..
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 84 VALYRQAEDRERGKGYLEQALSVLKDAERVN--PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHhhhhhhhhcccccCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 444 67777777777776655 4556667777777777777777777777777665 46666777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005178 477 CLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQ 530 (710)
Q Consensus 477 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 530 (710)
+|...|++++|+..|+++++.... +...+..+..++...|++++|...+++..
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC---------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 777777777777777777653221 44566666667777777777776666543
No 41
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.59 E-value=6.5e-13 Score=129.99 Aligned_cols=212 Identities=13% Similarity=0.043 Sum_probs=155.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005178 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407 (710)
Q Consensus 328 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 407 (710)
..|..+...+...|++++|...|+++.+.. +.+...+..+...|...|++++|.+.|+++.+.... +...+..+...|
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHH
Confidence 455666667777777777777777766553 335666777777777777777777777777665332 566777777888
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHH
Q 005178 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487 (710)
Q Consensus 408 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 487 (710)
...|++++|.++|+++.+.+..+.+...+..+...|...|++++|...|+++.+... .+...+..+...|...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888776222134566777888888888888888888888877543 2577788888888888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHH
Q 005178 488 VRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLI 543 (710)
Q Consensus 488 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L 543 (710)
+.+|+++.+... .+...+..+..++...|+.++|.++++++.+..|++..+..++
T Consensus 195 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 195 RQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp HHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred HHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 888888876432 3566777788888888888888888888888888877665544
No 42
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.59 E-value=1.4e-13 Score=131.49 Aligned_cols=185 Identities=11% Similarity=-0.022 Sum_probs=157.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHH
Q 005178 359 TPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTA 438 (710)
Q Consensus 359 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 438 (710)
+++...+..+...+.+.|++++|+..|++..+.... +...+..+..++.+.|++++|+..|++..+.. +.+...+..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~ 78 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART--PRYLGGYMV 78 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHH
Confidence 456667888889999999999999999999987544 78889999999999999999999999999877 678889999
Q ss_pred HHHHHHhC-----------CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 005178 439 MLNIYGSG-----------GNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCG 507 (710)
Q Consensus 439 li~~~~~~-----------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 507 (710)
+..+|... |++++|+..|++.++.... +...|..+..+|...|++++|+..|+++++.. .+...+.
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~ 155 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHH
Confidence 99999999 9999999999999886433 67888899999999999999999999999876 5788899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCC
Q 005178 508 CLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTG 549 (710)
Q Consensus 508 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~ 549 (710)
.+..+|...|++++|+..|+++.+.+|++..+...++..+..
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~ 197 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLL 197 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 999999999999999999999998888776555555544333
No 43
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.59 E-value=5.7e-12 Score=125.04 Aligned_cols=229 Identities=12% Similarity=0.089 Sum_probs=156.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 005178 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK----AGKPGLARSLFDEMVESGLTPDEKTLT 366 (710)
Q Consensus 291 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~ 366 (710)
+..++..+...|...|++++|...|++..+. -+..++..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3445555555666666666666666666552 244555556666666 666666666666666554 455566
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCCHHHHHH
Q 005178 367 ALIKIYGK----ARWAKDALELWERMRENKWPMDFILYNTLLNMCAD----IGLVEEAERLFEDMKLSDYCKPDNYSYTA 438 (710)
Q Consensus 367 ~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 438 (710)
.+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|++.|++..+.+ +...+..
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~ 151 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN----DGDGCTI 151 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT----CHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC----cHHHHHH
Confidence 66666666 677777777777666653 55666667777777 777777777777777643 4566667
Q ss_pred HHHHHHh----CCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005178 439 MLNIYGS----GGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK----ARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510 (710)
Q Consensus 439 li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 510 (710)
+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~ 225 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 225 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 7777776 778888888888777753 45677777777877 888888888888887754 255677777
Q ss_pred HHHHh----cCChHHHHHHHHHHHHhCCcHHH
Q 005178 511 SVVSL----CETSEDVGKVITCLQQANPKLVA 538 (710)
Q Consensus 511 ~~~~~----~g~~~~a~~~~~~~~~~~p~~~~ 538 (710)
.+|.. .+++++|.+.|+++.+.+|+...
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~ 257 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLGAKGAC 257 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcCCHHHH
Confidence 77877 88888888888888888776544
No 44
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.59 E-value=8.2e-13 Score=126.49 Aligned_cols=214 Identities=10% Similarity=-0.059 Sum_probs=143.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005178 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406 (710)
Q Consensus 327 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 406 (710)
...+..+...+...|++++|.+.|+++.+.. +.+...+..+...|...|++++|.+.|+++.+... .+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHHH
Confidence 3455556666666666666666666665542 23455666666666666777777776666665432 255666677777
Q ss_pred HHHc-CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHH
Q 005178 407 CADI-GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485 (710)
Q Consensus 407 ~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 485 (710)
|... |++++|...++++.+.+..+.+...+..+..+|...|++++|...++++.+.... +...+..+..+|.+.|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCHH
Confidence 7777 7777777777777662221233567777777777888888888888777765322 4677777788888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHH
Q 005178 486 DLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLI 543 (710)
Q Consensus 486 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L 543 (710)
+|+.+++++.+.....+...+..+...+...|+.+++..+++.+.+..|++..+...+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 8888888877643313556666777777788888888888888887888777665544
No 45
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.59 E-value=1.6e-13 Score=133.41 Aligned_cols=215 Identities=12% Similarity=0.068 Sum_probs=151.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005178 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405 (710)
Q Consensus 326 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 405 (710)
....|..+...+...|++++|..+|+++.+.. +.+...+..+...|...|++++|+..|+++.+... .+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHH
Confidence 34456666666777777777777777776643 33566677777777777777777777777776533 26677777888
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHH
Q 005178 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485 (710)
Q Consensus 406 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 485 (710)
.|...|++++|.+.++++.+.. +.+...+..+...|...|++++|..+++++.+... .+...+..+...|.+.|+++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHH
Confidence 8888888888888888887765 56777888888888888888888888888877543 26778888888888999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhh
Q 005178 486 DLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDN 546 (710)
Q Consensus 486 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 546 (710)
+|+..|+++.+... .+..++..+..+|...|++++|.+.++++.+..|++..+...++..
T Consensus 177 ~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 177 EALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-
T ss_pred HHHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHH
Confidence 99999988886532 2566888888899999999999999999999999888777666553
No 46
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.59 E-value=2.9e-13 Score=140.35 Aligned_cols=246 Identities=10% Similarity=0.060 Sum_probs=188.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005178 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK-PGLARSLFDEMVESGLTPDEKTLTALI 369 (710)
Q Consensus 291 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~li 369 (710)
+...|..+...+.+.|++++|+..++++++.. +-+..+|+.+..++...|+ +++|+..|+++++.. +.+...|..+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 35677888888888899999999999888754 3356788888888888886 899999988888764 44677888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh-CCC
Q 005178 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS-GGN 448 (710)
Q Consensus 370 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~ 448 (710)
.+|...|++++|+..|+++++.... +...|..+..++...|++++|+..|+++.+.. +.+...|+.+..+|.. .|.
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCc
Confidence 8888888888888888888876544 77888888888888888888888888888876 5678888888888888 555
Q ss_pred HHHH-----HHHHHHHHHcCCCcCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC---
Q 005178 449 VDNA-----IELFEEMSELGVAINVMGCTCLIQCLGKAR--RIDDLVRVFGVSIDRGVKP-DDRLCGCLLSVVSLCE--- 517 (710)
Q Consensus 449 ~~~A-----~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g--- 517 (710)
.++| +..|+++++.... +...|..+...+.+.| ++++|++.++++ + ..| +...+..+..+|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~~al~~La~~~~~~~~~~ 326 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSPYLIAFLVDIYEDMLENQ 326 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCHHHHHHHHHHHHHHhccc
Confidence 5666 4778887775433 5677888888888777 578888888776 3 333 4456677777777753
Q ss_pred ------ChHHHHHHHHHH-HHhCCcHHHHHHHHHh
Q 005178 518 ------TSEDVGKVITCL-QQANPKLVAFLNLIED 545 (710)
Q Consensus 518 ------~~~~a~~~~~~~-~~~~p~~~~~~~~L~~ 545 (710)
..++|.++|+++ .+++|....++..++.
T Consensus 327 ~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~ 361 (382)
T 2h6f_A 327 CDNKEDILNKALELCEILAKEKDTIRKEYWRYIGR 361 (382)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 247788888888 7888877777666554
No 47
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.58 E-value=1.5e-13 Score=147.09 Aligned_cols=341 Identities=10% Similarity=0.023 Sum_probs=178.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-
Q 005178 231 CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKV---EEVLSLYERGVASGWKPDPIAFSVLGKMFGESG- 306 (710)
Q Consensus 231 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g- 306 (710)
.+.+.|++++|+++|++..+.| +...+..|...|...|+. ++|+..|++..+. +...+..|...+...+
T Consensus 12 ~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 12 EALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHTC--
T ss_pred HHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCC
Confidence 4444555566666665555543 222333444444445555 5666666555532 3444444444333333
Q ss_pred ----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--
Q 005178 307 ----DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG---LARSLFDEMVESGLTPDEKTLTALIKIYGKARW-- 377 (710)
Q Consensus 307 ----~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-- 377 (710)
++++|...|++..+.|.. + .+..|...|...+..+ ++.+.+......| +...+..+...|...+.
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~~-~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGEG-N--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCS-S--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGG
T ss_pred CCCcCHHHHHHHHHHHHHCCCH-H--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcc
Confidence 555666666666654421 1 4444555555444322 2333344433333 22344445555555553
Q ss_pred --HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhC----CC
Q 005178 378 --AKDALELWERMRENKWPMDFILYNTLLNMCADIG---LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG----GN 448 (710)
Q Consensus 378 --~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~ 448 (710)
.+.+..+++..... +...+..|..+|...| +.++|++.|++..+.+ +++...+..|..+|... ++
T Consensus 159 ~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g--~~~a~~~~~Lg~~y~~g~~~~~d 232 (452)
T 3e4b_A 159 QHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG--TVTAQRVDSVARVLGDATLGTPD 232 (452)
T ss_dssp GGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--CSCHHHHHHHHHHHTCGGGSSCC
T ss_pred cCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCCCCCCCC
Confidence 33333333333322 2225666666666677 6777777777777766 46666656666666544 57
Q ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----ChH
Q 005178 449 VDNAIELFEEMSELGVAINVMGCTCLIQC-L--GKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCE-----TSE 520 (710)
Q Consensus 449 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g-----~~~ 520 (710)
+++|..+|++.. . -+...+..|... | ...|++++|+..|++..+.| +...+..|...|. .| +.+
T Consensus 233 ~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~ 304 (452)
T 3e4b_A 233 EKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAK 304 (452)
T ss_dssp HHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHH
T ss_pred HHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHH
Confidence 777777777766 2 345555555555 3 35677777777777777665 4555666666665 44 777
Q ss_pred HHHHHHHHHHHhCCcHHHHHHHHHhhcCCc---ccHHHHHHHHHHhccCCCChhhHHHHHHHHHh----CCCHHHHHHHH
Q 005178 521 DVGKVITCLQQANPKLVAFLNLIEDNSTGF---ENIKEEFRNVIKDTEVDARRPFCNCLIDICRN----RNLNERAHELL 593 (710)
Q Consensus 521 ~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~ 593 (710)
+|.++|+++. |.+......||..+... ....++|..++++.....+...+..|+.+|.. ..+.++|...|
T Consensus 305 ~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~ 381 (452)
T 3e4b_A 305 AAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFS 381 (452)
T ss_dssp HHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHH
T ss_pred HHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence 7777777666 66666666666554331 12455666666654444445566677777764 45888999999
Q ss_pred HHHHHcCC
Q 005178 594 YLGTLYGL 601 (710)
Q Consensus 594 ~~~~~~~~ 601 (710)
+++.+.|.
T Consensus 382 ~~A~~~g~ 389 (452)
T 3e4b_A 382 QLAKAQDT 389 (452)
T ss_dssp HHHHTTCC
T ss_pred HHHHHCCC
Confidence 98877663
No 48
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.58 E-value=3.3e-13 Score=139.89 Aligned_cols=239 Identities=7% Similarity=0.064 Sum_probs=203.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005178 256 DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD-YDGIRYVLQEMKSLGVQPNLVVYNTLL 334 (710)
Q Consensus 256 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~li 334 (710)
+...|..+..++.+.|++++|+..|++++... +-+..+|+.+..+|...|+ +++|+..|+++.+.. +-+...|+.+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 46778889999999999999999999999864 4568899999999999997 999999999999864 33778999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCH
Q 005178 335 EAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCAD-IGLV 413 (710)
Q Consensus 335 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~ 413 (710)
.++...|++++|+..|+++++.. +-+...|..+..++.+.|++++|+..|+++++.... +...|+.+..++.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999999875 457889999999999999999999999999987655 78899999999999 6665
Q ss_pred HHH-----HHHHHHHHhCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC----
Q 005178 414 EEA-----ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG--NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKAR---- 482 (710)
Q Consensus 414 ~~A-----~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---- 482 (710)
++| ++.|++..+.. +.+...|+.+...|...| ++++|+..+.++ +. ...+...+..++.+|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~--P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLV--PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccc
Confidence 777 58899988876 678899999999999988 689999999888 43 2336788899999998874
Q ss_pred -----CHHHHHHHHHHH-HHCCCCCCHH
Q 005178 483 -----RIDDLVRVFGVS-IDRGVKPDDR 504 (710)
Q Consensus 483 -----~~~~A~~~~~~m-~~~~~~p~~~ 504 (710)
..++|+++|+++ .+ +.|...
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~--~DP~r~ 353 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKE--KDTIRK 353 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHT--TCGGGH
T ss_pred cchHHHHHHHHHHHHHHHHH--hCchhH
Confidence 358999999998 55 455443
No 49
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.57 E-value=7.8e-12 Score=124.06 Aligned_cols=224 Identities=14% Similarity=0.084 Sum_probs=134.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 005178 256 DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE----SGDYDGIRYVLQEMKSLGVQPNLVVYN 331 (710)
Q Consensus 256 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~ 331 (710)
+..++..+...|...|++++|+..|++..+. -+...+..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3444555555555555555555555555552 234455555555555 566666666666655543 455555
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 005178 332 TLLEAMGK----AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK----ARWAKDALELWERMRENKWPMDFILYNTL 403 (710)
Q Consensus 332 ~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 403 (710)
.+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 55556655 666666666666665543 44555556666666 666666666666666553 44555556
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 005178 404 LNMCAD----IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS----GGNVDNAIELFEEMSELGVAINVMGCTCLI 475 (710)
Q Consensus 404 i~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 475 (710)
...|.. .+++++|...|++..+.+ +...+..+..+|.. .+++++|...|++..+.+ +...+..+.
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~ 225 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK----DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 225 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 666665 666777777776666543 44566666666666 677777777777766643 255666666
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHCC
Q 005178 476 QCLGK----ARRIDDLVRVFGVSIDRG 498 (710)
Q Consensus 476 ~~~~~----~g~~~~A~~~~~~m~~~~ 498 (710)
..|.+ .+++++|+..|++..+.|
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 66666 677777777777776643
No 50
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.56 E-value=9.4e-13 Score=130.48 Aligned_cols=234 Identities=11% Similarity=0.014 Sum_probs=159.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHH
Q 005178 259 TYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP--NLVVYNTLLEA 336 (710)
Q Consensus 259 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~ 336 (710)
.+......+...|++++|+..|+++++.. +.+...+..+...|...|++++|+..+++..+.+..+ ...+|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 34455566667777777777777776653 2334466667777777777777777777776632111 12346677777
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 005178 337 MGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEA 416 (710)
Q Consensus 337 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 416 (710)
+...|++++|++.|++..+.. +.+...+..+...|...|++++|+..|++..+.. +.+...+..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777653 3345677777777788888888888887777653 22566666666344445588888
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHcC-CCcC------HHHHHHHHHHHHhcCCHHH
Q 005178 417 ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN---VDNAIELFEEMSELG-VAIN------VMGCTCLIQCLGKARRIDD 486 (710)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~-~~p~------~~~~~~li~~~~~~g~~~~ 486 (710)
.+.|+++.+.. +.+...+..+..++...|+ +++|...++++.+.. ..|+ ..+|..+...|.+.|++++
T Consensus 162 ~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 162 DSSFVKVLELK--PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhC--ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 88888887765 4567777777888877777 777888887776531 1122 2567778888888888888
Q ss_pred HHHHHHHHHHC
Q 005178 487 LVRVFGVSIDR 497 (710)
Q Consensus 487 A~~~~~~m~~~ 497 (710)
|+..|+++++.
T Consensus 240 A~~~~~~al~~ 250 (272)
T 3u4t_A 240 ADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 88888888874
No 51
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.54 E-value=3e-12 Score=125.29 Aligned_cols=197 Identities=11% Similarity=0.019 Sum_probs=79.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 005178 260 YSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339 (710)
Q Consensus 260 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 339 (710)
+..+...|...|++++|+..|+++.+.. +.+...+..+...|...|++++|..+++++.+.. +.+...+..+...+..
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYE 117 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHH
Confidence 3333344444444444444444443321 2233344444444444444444444444443321 1133344444444444
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005178 340 AGKPGLARSLFDEMVESGLTP-DEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAER 418 (710)
Q Consensus 340 ~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 418 (710)
.|++++|.++|+++.+.+..| +...+..+...|.+.|++++|...|+++.+.... +...+..+...|...|++++|..
T Consensus 118 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHHHHH
Confidence 444444444444444311112 2233333444444444444444444444333211 33344444444444444444444
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 005178 419 LFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461 (710)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (710)
.++++.+.. +.+...+..+...|...|++++|..+++++.+
T Consensus 197 ~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 197 YYDLFAQGG--GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHTTS--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhC--cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 444444332 23334444444444444444444444444443
No 52
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.54 E-value=4.7e-12 Score=121.14 Aligned_cols=201 Identities=7% Similarity=-0.042 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005178 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371 (710)
Q Consensus 292 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 371 (710)
...+..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|.+.|+++.+.. +.+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 3445555555555555555555555555432 2234455555566666666666666666655442 2345555666666
Q ss_pred HHhc-CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCH
Q 005178 372 YGKA-RWAKDALELWERMRENKWPM-DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNV 449 (710)
Q Consensus 372 ~~~~-g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 449 (710)
|... |++++|...++++.+.+..| +...+..+..++...|++++|...|+++.+.. +.+...+..+...|...|++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ--PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHcCCH
Confidence 6666 66666666666666522222 24556666666667777777777777666654 44566677777777777777
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005178 450 DNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496 (710)
Q Consensus 450 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 496 (710)
++|..+++++.+.....+...+..+...+...|+.++|..+++.+..
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 77777777766643323555666666666777777777777776654
No 53
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.53 E-value=4.3e-13 Score=133.06 Aligned_cols=219 Identities=12% Similarity=0.036 Sum_probs=104.2
Q ss_pred CCHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005178 271 GKVEEVLSLYERGVASGW---KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347 (710)
Q Consensus 271 g~~~~A~~~~~~~~~~g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 347 (710)
|++++|+..|+++.+... +.+..++..+...|...|++++|...|+++.+.. +.+..+|..+...+...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 444455555554444311 0123344444455555555555555555554432 123445555555555555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 005178 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427 (710)
Q Consensus 348 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 427 (710)
..|+++.+.. +.+...+..+...|.+.|++++|...|+++.+.. |+.......+..+...|++++|...+.+.....
T Consensus 98 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 98 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 5555554432 2234445555555555555555555555555432 222222223333344456666666665554443
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005178 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI---NVMGCTCLIQCLGKARRIDDLVRVFGVSID 496 (710)
Q Consensus 428 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 496 (710)
+++...+. ++..+...++.++|...+.++.+..... +...|..+..+|.+.|++++|+..|++++.
T Consensus 175 --~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 175 --DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp --CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred --CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 23333332 4444555555556666665554421110 134555556666666666666666666554
No 54
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.53 E-value=1.2e-10 Score=128.87 Aligned_cols=411 Identities=8% Similarity=-0.001 Sum_probs=274.0
Q ss_pred CCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcC-CCCCHHH
Q 005178 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNL---FDEAIEWFERMYKTG-LMPDEVT 259 (710)
Q Consensus 184 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~~~~~~ 259 (710)
+.|...|..++..+.+.+.++.+..+|+.++.. .+.....|...+..-.+.++ ++.+.++|++.+... ..|++..
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 567888888888888888888888888888876 34466777777777777777 888888888887763 1367778
Q ss_pred HHHHHHHHHHcCCH--------HHHHHHHHHHHh-CCC-CC-CHHHHHHHHHHHHh---------cCCHHHHHHHHHHHH
Q 005178 260 YSAILDVYAKSGKV--------EEVLSLYERGVA-SGW-KP-DPIAFSVLGKMFGE---------SGDYDGIRYVLQEMK 319 (710)
Q Consensus 260 ~~~li~~~~~~g~~--------~~A~~~~~~~~~-~g~-~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~ 319 (710)
|...+....+.++. +...++|+..+. .|. .+ +...|...+..... .++++.+..+|++++
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 87777766665543 334467776554 344 34 35677777765432 345677788888877
Q ss_pred HCCCCCCHHHHHHH---HHHH----------HHcCCHHHHHHHHHHHHH--CCCC---------------C-----C---
Q 005178 320 SLGVQPNLVVYNTL---LEAM----------GKAGKPGLARSLFDEMVE--SGLT---------------P-----D--- 361 (710)
Q Consensus 320 ~~g~~p~~~~~~~l---i~~~----------~~~g~~~~A~~~~~~m~~--~g~~---------------p-----~--- 361 (710)
......-..+|... ...+ -...+++.|...+.++.. .++. | +
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~q 301 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQ 301 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHH
T ss_pred hCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHH
Confidence 53211111233221 1111 011234445555655432 1211 1 0
Q ss_pred HHHHHHHHHHHHhcC-------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhCCCCCCCH
Q 005178 362 EKTLTALIKIYGKAR-------WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE-RLFEDMKLSDYCKPDN 433 (710)
Q Consensus 362 ~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~ 433 (710)
...|...+..--..+ ..+.+..+|++.+.. ++-+...|...+.-+...|+.++|. ++|++..... +.+.
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~--P~s~ 378 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI--PNSA 378 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC--TTCH
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC--CCCH
Confidence 134444544333322 134456788888876 3447888888888888999999996 9999998753 6778
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---------CcC------------HHHHHHHHHHHHhcCCHHHHHHHHH
Q 005178 434 YSYTAMLNIYGSGGNVDNAIELFEEMSELGV---------AIN------------VMGCTCLIQCLGKARRIDDLVRVFG 492 (710)
Q Consensus 434 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---------~p~------------~~~~~~li~~~~~~g~~~~A~~~~~ 492 (710)
..|..++....+.|+++.|..+|+++++... .|+ ...|...+....+.|..+.|..+|.
T Consensus 379 ~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~ 458 (679)
T 4e6h_A 379 VLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFG 458 (679)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8888999999999999999999999986310 132 3468888888889999999999999
Q ss_pred HHHHC-CCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHHHHhc-cCCCC
Q 005178 493 VSIDR-GVKPDDRLCGCLLSVVSLC-ETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDT-EVDAR 569 (710)
Q Consensus 493 ~m~~~-~~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~~~-~~~~~ 569 (710)
++++. +. .....|...+..-.+. ++.+.|.++|+...+..|+...++..++......+ ..+.|..+++.. ...++
T Consensus 459 ~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~-~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 459 KCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVN-EESQVKSLFESSIDKISD 536 (679)
T ss_dssp HHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHTTTSSS
T ss_pred HHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcCC
Confidence 99875 22 1234444433333444 44899999999999988888777655544333223 567888888763 33332
Q ss_pred ----hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 005178 570 ----RPFCNCLIDICRNRNLNERAHELLYLGTLYG 600 (710)
Q Consensus 570 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 600 (710)
..+|..++..-.++|+.+.+.++.+++.+..
T Consensus 537 ~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 537 SHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp TTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3489999999999999999999999987554
No 55
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.53 E-value=5.3e-13 Score=132.41 Aligned_cols=185 Identities=9% Similarity=-0.035 Sum_probs=90.5
Q ss_pred ccCChHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 005178 199 FGRQFQLIEQLANEMVSNEIE---LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEE 275 (710)
Q Consensus 199 ~~g~~~~A~~l~~~m~~~g~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 275 (710)
..|++++|+..|+++.+.... .+...|..+..++...|++++|++.|+++.+.... +..+|..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHH
Confidence 345566666666666554211 12344555555566666666666666665554322 45555556666666666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005178 276 VLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVE 355 (710)
Q Consensus 276 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 355 (710)
|+..|+++++.. +.+..++..+...|.+.|++++|...|+++.+.. |+.......+..+...|++++|...+++...
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 666666555532 2234555555555555555555555555555432 2222222233333444555555555544443
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005178 356 SGLTPDEKTLTALIKIYGKARWAKDALELWERMR 389 (710)
Q Consensus 356 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 389 (710)
.. +++...+ .++..+...++.++|...+....
T Consensus 173 ~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~ 204 (275)
T 1xnf_A 173 KS-DKEQWGW-NIVEFYLGNISEQTLMERLKADA 204 (275)
T ss_dssp HS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHC
T ss_pred cC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHh
Confidence 31 1222222 23333444444444444444443
No 56
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.52 E-value=9.9e-13 Score=127.74 Aligned_cols=129 Identities=12% Similarity=0.058 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 005178 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIY 443 (710)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~ 443 (710)
.+..+...|...|++++|.+.|+++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...|
T Consensus 93 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~ 169 (243)
T 2q7f_A 93 AYYGAGNVYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN--ENDTEARFQFGMCL 169 (243)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CccHHHHHHHHHHH
Confidence 333333333344444444444443333221 133334444444444444444444444444332 23344444444444
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005178 444 GSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496 (710)
Q Consensus 444 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 496 (710)
...|++++|...|+++.+... .+..+|..+..+|.+.|++++|+..|+++.+
T Consensus 170 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 170 ANEGMLDEALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 444444444444444444321 1344444444445555555555555554444
No 57
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.51 E-value=2.5e-12 Score=137.48 Aligned_cols=337 Identities=12% Similarity=0.043 Sum_probs=161.6
Q ss_pred HhccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCCh---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--
Q 005178 162 NSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQF---QLIEQLANEMVSNEIELDNITYSTIITCAKRCN-- 236 (710)
Q Consensus 162 ~~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g-- 236 (710)
...+++++|+..|+.+...+ +...+..+..+|...|+. ++|+..|++..+. +...+..+...+...+
T Consensus 14 ~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 14 LKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHT----CCTGGGTCC--------------------------------CHHHHHHHHHTC--C
T ss_pred HhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCC
Confidence 34445666666666665442 222344455555555655 6666666666543 3333444444333333
Q ss_pred ---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 005178 237 ---LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVE---EVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDG 310 (710)
Q Consensus 237 ---~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 310 (710)
++++|+.+|++..+.|.. ..+..|...|...+..+ ++.+.+......| +...+..|...|...+.+++
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGG
T ss_pred CCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCccc
Confidence 556666666666665432 24555555555544322 2333344333332 34455555566665553333
Q ss_pred ----HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHH
Q 005178 311 ----IRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG---KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA----RWAK 379 (710)
Q Consensus 311 ----A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~----g~~~ 379 (710)
+..+++.... .+...+..|...|.+.| +.++|++.|++..+.| .++...+..|...|... ++++
T Consensus 160 ~~~~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~ 234 (452)
T 3e4b_A 160 HLDDVERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEK 234 (452)
T ss_dssp GHHHHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHH
T ss_pred CHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHH
Confidence 3333333222 12225556666666666 6666666666666665 33444444455555443 4666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCC-----CHHH
Q 005178 380 DALELWERMRENKWPMDFILYNTLLNM-C--ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG-----NVDN 451 (710)
Q Consensus 380 ~A~~~~~~m~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~ 451 (710)
+|+..|++.. .| +...+..|... | ...+++++|.+.|++..+.+ +...+..|..+|. .| ++++
T Consensus 235 ~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g----~~~A~~~Lg~~y~-~G~g~~~d~~~ 305 (452)
T 3e4b_A 235 TAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD----QPRAELLLGKLYY-EGKWVPADAKA 305 (452)
T ss_dssp HHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHH-HCSSSCCCHHH
T ss_pred HHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHH-cCCCCCCCHHH
Confidence 6666666665 22 34444455544 2 34566666666666666533 4555566666655 33 6666
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHH
Q 005178 452 AIELFEEMSELGVAINVMGCTCLIQCLGK----ARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSL----CETSEDVG 523 (710)
Q Consensus 452 A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~ 523 (710)
|...|++.. . -+...+..|...|.. ..++++|+..|++..+.|. ...+..|..+|.. ..+.++|.
T Consensus 306 A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~ 378 (452)
T 3e4b_A 306 AEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAY 378 (452)
T ss_dssp HHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHH
T ss_pred HHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHH
Confidence 666666655 2 245555555555554 2366666666666665542 2233344444442 23556666
Q ss_pred HHHHHHHHhC
Q 005178 524 KVITCLQQAN 533 (710)
Q Consensus 524 ~~~~~~~~~~ 533 (710)
.+|+...+..
T Consensus 379 ~~~~~A~~~g 388 (452)
T 3e4b_A 379 VFSQLAKAQD 388 (452)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHHCC
Confidence 6666555443
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.50 E-value=2.6e-13 Score=143.05 Aligned_cols=279 Identities=14% Similarity=0.103 Sum_probs=157.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCC-CH
Q 005178 222 NITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPD----EVTYSAILDVYAKSGKVEEVLSLYERGVAS----GWKP-DP 292 (710)
Q Consensus 222 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~~~-~~ 292 (710)
...+......+...|++++|+..|+++.+.+.. + ..++..+...|...|++++|...|+++... +-.+ ..
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 334444444555556666666666555554221 2 234455555555555555555555554321 1000 12
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005178 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGV-QPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371 (710)
Q Consensus 293 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 371 (710)
.++..+...|...|++++|...+++..+... ..+. .....++..+...
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~~~l~~~ 136 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK-------------------------------VGEARALYNLGNV 136 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-------------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc-------------------------------cchHHHHHHHHHH
Confidence 2344444444444444444444444433200 0000 0002244455555
Q ss_pred HHhcCC--------------------HHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005178 372 YGKARW--------------------AKDALELWERMREN----KWPM-DFILYNTLLNMCADIGLVEEAERLFEDMKLS 426 (710)
Q Consensus 372 ~~~~g~--------------------~~~A~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 426 (710)
|...|+ +++|...+.+..+. +..+ ...++..+...|...|++++|...+++..+.
T Consensus 137 ~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (406)
T 3sf4_A 137 YHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 216 (406)
T ss_dssp HHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHH
T ss_pred HHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 555555 66666665554321 1111 1345667777777888888888887776543
Q ss_pred CCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-cC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005178 427 DYCKPD----NYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA-IN----VMGCTCLIQCLGKARRIDDLVRVFGVSIDR 497 (710)
Q Consensus 427 ~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 497 (710)
..-.++ ..++..+...|...|++++|...+++..+.... .+ ..++..+...|...|++++|+..|++..+.
T Consensus 217 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 217 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 110122 236778888888888888888888887652111 11 457778888888899999998888887642
Q ss_pred CC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 005178 498 GV-KPD----DRLCGCLLSVVSLCETSEDVGKVITCLQQA 532 (710)
Q Consensus 498 ~~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 532 (710)
.. ..+ ..++..+..+|...|++++|.+.++++.++
T Consensus 297 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 297 AQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 11 111 346777888888899999999888887654
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.49 E-value=4.7e-13 Score=141.58 Aligned_cols=281 Identities=14% Similarity=0.090 Sum_probs=170.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhC----C-CCCCHHHH
Q 005178 225 YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDE----VTYSAILDVYAKSGKVEEVLSLYERGVAS----G-WKPDPIAF 295 (710)
Q Consensus 225 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g-~~~~~~~~ 295 (710)
+..+...+...|++++|+..|+++.+.+.. +. ..+..+...|...|++++|+..|+++++. + .+....++
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 334444666677777777777776665322 22 35666666666677777777766665532 1 01123445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHh
Q 005178 296 SVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL-TPDEKTLTALIKIYGK 374 (710)
Q Consensus 296 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~ 374 (710)
..+...|...|++++|...+++..+... ..+- .....++..+...|..
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~-------------------------------~~~~~~~~~~~~~~l~~~~~~ 178 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLAR-------------------------------QLGDRLSEGRALYNLGNVYHA 178 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------------------HHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHH-------------------------------HhhchHHHHHHHHHHHHHHHH
Confidence 5555555566666666665555543100 0000 0012234444444444
Q ss_pred cCC-----------------HHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCC
Q 005178 375 ARW-----------------AKDALELWERMREN----KW-PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPD 432 (710)
Q Consensus 375 ~g~-----------------~~~A~~~~~~m~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 432 (710)
.|+ +++|++.+++..+. +. ......+..+...|...|++++|++.+++..+......+
T Consensus 179 ~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (411)
T 4a1s_A 179 KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD 258 (411)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC
Confidence 455 55555554443321 10 112345666777777888888888887776553210112
Q ss_pred ----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-----cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC
Q 005178 433 ----NYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA-----INVMGCTCLIQCLGKARRIDDLVRVFGVSIDR----GV 499 (710)
Q Consensus 433 ----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~ 499 (710)
..++..+...|...|++++|...++++.+.... ....++..+...|...|++++|+..|++.++. +.
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 237788888899999999999999887763111 12567888888999999999999999988742 11
Q ss_pred CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHH
Q 005178 500 KP-DDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLV 537 (710)
Q Consensus 500 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 537 (710)
.+ ...++..+..+|...|++++|.++++++.++.+...
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 377 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXXX 377 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHH
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcc
Confidence 11 133777888899999999999999999988766543
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.48 E-value=1.2e-12 Score=137.86 Aligned_cols=305 Identities=15% Similarity=0.063 Sum_probs=195.9
Q ss_pred CCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC
Q 005178 183 FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELD----NITYSTIITCAKRCNLFDEAIEWFERMYKT----GLM 254 (710)
Q Consensus 183 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~ 254 (710)
.......+......+...|++++|...|+++.+.... + ...|..+..++...|++++|...|++..+. +..
T Consensus 5 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 83 (406)
T 3sf4_A 5 MEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ 83 (406)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccc
Confidence 3556777888889999999999999999999986322 3 357788888999999999999999987653 211
Q ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCC--------------------H
Q 005178 255 P-DEVTYSAILDVYAKSGKVEEVLSLYERGVASGW-KPD----PIAFSVLGKMFGESGD--------------------Y 308 (710)
Q Consensus 255 ~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~-~~~----~~~~~~li~~~~~~g~--------------------~ 308 (710)
+ ...++..+...|...|++++|+..+++..+..- ..+ ..++..+...|...|+ +
T Consensus 84 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~ 163 (406)
T 3sf4_A 84 LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDAL 163 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHH
Confidence 1 255788899999999999999999999886420 011 3356666777777777 6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005178 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTP-DEKTLTALIKIYGKARWAKDALELWER 387 (710)
Q Consensus 309 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 387 (710)
++|...+++..+.. . ..+..+ ...++..+...|...|++++|...+++
T Consensus 164 ~~A~~~~~~al~~~----------------------------~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 212 (406)
T 3sf4_A 164 QAAVDFYEENLSLV----------------------------T---ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQ 212 (406)
T ss_dssp HHHHHHHHHHHHHH----------------------------H---HTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----------------------------H---hccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 66666665554310 0 000000 112344444445555555555555544
Q ss_pred HHhCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHH
Q 005178 388 MRENKW-PMD----FILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPD----NYSYTAMLNIYGSGGNVDNAIELFEE 458 (710)
Q Consensus 388 m~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~ 458 (710)
..+... .++ ..++..+...|...|++++|...+++..+......+ ..++..+...|...|++++|...+++
T Consensus 213 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 292 (406)
T 3sf4_A 213 RLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 292 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 432100 001 235666666777777777777777766542100111 45677788888888888888888888
Q ss_pred HHHcCCC-cC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCh
Q 005178 459 MSELGVA-IN----VMGCTCLIQCLGKARRIDDLVRVFGVSIDR----GVKPD-DRLCGCLLSVVSLCETS 519 (710)
Q Consensus 459 m~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~ll~~~~~~g~~ 519 (710)
+.+.... .+ ..++..+...|.+.|++++|+..|++..+. +..+. ..++..+..++...|+.
T Consensus 293 a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 293 HLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 7653111 11 557778888888899999999988887642 21111 23455566666666654
No 61
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.48 E-value=1.5e-11 Score=124.47 Aligned_cols=254 Identities=13% Similarity=0.057 Sum_probs=157.6
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-------hcCCH-------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 005178 274 EEVLSLYERGVASGWKPDPIAFSVLGKMFG-------ESGDY-------DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339 (710)
Q Consensus 274 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 339 (710)
++|..+|++++... +.+...|..++..+. +.|++ ++|..+|++..+.-.+-+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45555555555432 334555555555543 23554 6677777776652112244566667777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HcCCHHHH
Q 005178 340 AGKPGLARSLFDEMVESGLTPD-EK-TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCA-DIGLVEEA 416 (710)
Q Consensus 340 ~g~~~~A~~~~~~m~~~g~~p~-~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~-~~g~~~~A 416 (710)
.|++++|.++|+++++. .|+ .. .|..++..+.+.|++++|..+|++..+... .+...|........ ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHH
Confidence 77777777777777654 332 22 667777777777777777777777776533 23444443333322 25888888
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCc--CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005178 417 ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG-VAI--NVMGCTCLIQCLGKARRIDDLVRVFGV 493 (710)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~ 493 (710)
..+|++..+.. +.+...|..++..+.+.|++++|..+|+++.+.. +.| ....|..++..+.+.|+.++|..++++
T Consensus 189 ~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 189 FKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888887764 5577888888888888888888888888888752 343 466788888888888888888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhh
Q 005178 494 SIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDN 546 (710)
Q Consensus 494 m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 546 (710)
+.+.. |+......+ ..+.. ...+.+..|++...++.||+.
T Consensus 267 a~~~~--p~~~~~~~~-~~~~~----------r~~~l~~~P~~~~~ln~lgY~ 306 (308)
T 2ond_A 267 RFTAF--REEYEGKET-ALLVD----------RYKFMDLYPCSASELKALGYK 306 (308)
T ss_dssp HHHHT--TTTTSSCHH-HHHHT----------TTCBTTBCSSCHHHHHTTTCC
T ss_pred HHHHc--ccccccchH-HHHHH----------HHHhcccCCCCHHHHHhcCCC
Confidence 87632 321100000 00000 002345678888888887763
No 62
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.48 E-value=2.1e-12 Score=136.56 Aligned_cols=280 Identities=13% Similarity=0.062 Sum_probs=186.8
Q ss_pred cHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CC-CCC
Q 005178 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDN----ITYSTIITCAKRCNLFDEAIEWFERMYKT----GL-MPD 256 (710)
Q Consensus 186 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~~~ 256 (710)
....+..+...+...|++++|+..|+++++.... +. ..|..+..+|...|++++|++.|++..+. +. ...
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 4455667778899999999999999999986422 33 47888888999999999999999988764 11 123
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHH
Q 005178 257 EVTYSAILDVYAKSGKVEEVLSLYERGVASG-----WKPDPIAFSVLGKMFGESGD-----------------YDGIRYV 314 (710)
Q Consensus 257 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g-----~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~ 314 (710)
..++..+...|...|++++|+..|+++.+.. ......++..+...|...|+ +++|+..
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 5678889999999999999999999887531 01123456666677777777 6666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 005178 315 LQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL-TPDEKTLTALIKIYGKARWAKDALELWERMRENKW 393 (710)
Q Consensus 315 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 393 (710)
+++..+. +... +. .....++..+...|...|++++|+..|++..+...
T Consensus 206 ~~~al~~----------------------------~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 254 (411)
T 4a1s_A 206 YQENLKL----------------------------MRDL---GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAR 254 (411)
T ss_dssp HHHHHHH----------------------------HHHH---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----------------------------HHHc---CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 5554331 0000 00 00112344444555555555555555555443210
Q ss_pred C-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 005178 394 P-MD----FILYNTLLNMCADIGLVEEAERLFEDMKLSDYCK----PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464 (710)
Q Consensus 394 ~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 464 (710)
. .+ ...+..+...|...|++++|.+.|++......-. ....++..+...|...|++++|...+++..+...
T Consensus 255 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 334 (411)
T 4a1s_A 255 EFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQ 334 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 0 01 2356667777777788888877777665432100 1246777888888899999999999888765311
Q ss_pred -----CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005178 465 -----AINVMGCTCLIQCLGKARRIDDLVRVFGVSIDR 497 (710)
Q Consensus 465 -----~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 497 (710)
.....++..+...|.+.|++++|...|++..+.
T Consensus 335 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 335 ELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 112457788888999999999999999988763
No 63
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.47 E-value=1.2e-11 Score=114.47 Aligned_cols=172 Identities=10% Similarity=-0.009 Sum_probs=119.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 005178 361 DEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440 (710)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li 440 (710)
+...|..+...|.+.|++++|++.|++..+.... +...+..+..+|.+.|++++|...+....... +.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD--TTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--chhHHHHHHHH
Confidence 4556666777777777777777777776665433 56666777777777777777777777776655 45666677777
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 005178 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSE 520 (710)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 520 (710)
..+...++++.|...+.+..+.... +...+..+..+|.+.|++++|+..|++.++.... +..+|..+..+|.+.|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHH
Confidence 7777777777777777777664332 5666777777777777777777777777764322 4556777777777778888
Q ss_pred HHHHHHHHHHHhCCcHH
Q 005178 521 DVGKVITCLQQANPKLV 537 (710)
Q Consensus 521 ~a~~~~~~~~~~~p~~~ 537 (710)
+|.+.|+++.+++|++.
T Consensus 159 ~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 159 EAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHhCCccCH
Confidence 88888877777777654
No 64
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.47 E-value=1.1e-11 Score=129.77 Aligned_cols=231 Identities=7% Similarity=-0.042 Sum_probs=165.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-----CHHHHH
Q 005178 368 LIKIYGKARWAKDALELWERMREN----KWPM-DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP-----DNYSYT 437 (710)
Q Consensus 368 li~~~~~~g~~~~A~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~ 437 (710)
....+...|++++|+..|++..+. +-.+ ...++..+...|...|++++|...+.+..+...-.+ ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445566778888888888877653 1111 235677777888888888888888877665311011 245778
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCC-cC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHH
Q 005178 438 AMLNIYGSGGNVDNAIELFEEMSELGVA-IN----VMGCTCLIQCLGKARRIDDLVRVFGVSIDR----GVKP-DDRLCG 507 (710)
Q Consensus 438 ~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~ 507 (710)
.+...|...|++++|...|++..+.... .+ ..++..+..+|...|++++|+..|++.++. +..| ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8888889999999999988887753111 11 247888888999999999999999888762 2213 345788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHh-----CCcHHHHHHHHHhhcCCccc--HHHHHHHHHHhccCCCChh-hHHHHHHH
Q 005178 508 CLLSVVSLCETSEDVGKVITCLQQA-----NPKLVAFLNLIEDNSTGFEN--IKEEFRNVIKDTEVDARRP-FCNCLIDI 579 (710)
Q Consensus 508 ~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~~~~~~~L~~~~~~~~~--~~~~a~~~~~~~~~~~~~~-~~~~l~~~ 579 (710)
.+..+|...|++++|.+.++++.++ +|.....+..|+..+...++ ..++|..++++....++.. ++..|+.+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 8888999999999999999988765 34444445667777666552 3677778887775444433 67889999
Q ss_pred HHhCCCHHHHHHHHHHHHH
Q 005178 580 CRNRNLNERAHELLYLGTL 598 (710)
Q Consensus 580 ~~~~g~~~~A~~~~~~~~~ 598 (710)
|...|++++|.+.++++..
T Consensus 349 y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 9999999999999998864
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.46 E-value=6.9e-11 Score=119.49 Aligned_cols=224 Identities=10% Similarity=0.059 Sum_probs=184.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005178 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK-------AGKP-------GLARSLFDEMVESGLTPDEKTLTALIKIYGK 374 (710)
Q Consensus 309 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 374 (710)
++|..+|++..... +-+...|..++..+.. .|++ ++|..+|++.++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 68889999998753 4477788888887763 5886 9999999999973123456789999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH-hCCCHHHH
Q 005178 375 ARWAKDALELWERMRENKWPMDFI-LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYG-SGGNVDNA 452 (710)
Q Consensus 375 ~g~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A 452 (710)
.|++++|..+|++..+.... +.. .|..++..+.+.|++++|..+|++..+.. +.+...|...+.... ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999985332 333 89999999999999999999999999876 456666665554433 37999999
Q ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 005178 453 IELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRG-VKP--DDRLCGCLLSVVSLCETSEDVGKVITCL 529 (710)
Q Consensus 453 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 529 (710)
..+|+++++.... +...|..++..+.+.|++++|+.+|++.+... +.| ....|..++..+.+.|+.++|..+++++
T Consensus 189 ~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999885432 68899999999999999999999999999863 454 4668889999999999999999999999
Q ss_pred HHhCCcHH
Q 005178 530 QQANPKLV 537 (710)
Q Consensus 530 ~~~~p~~~ 537 (710)
.+..|+..
T Consensus 268 ~~~~p~~~ 275 (308)
T 2ond_A 268 FTAFREEY 275 (308)
T ss_dssp HHHTTTTT
T ss_pred HHHccccc
Confidence 99999743
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.44 E-value=3.5e-12 Score=130.20 Aligned_cols=280 Identities=15% Similarity=0.107 Sum_probs=148.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCC-CCHHHHHH
Q 005178 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPD----EVTYSAILDVYAKSGKVEEVLSLYERGVAS----GWK-PDPIAFSV 297 (710)
Q Consensus 227 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~~-~~~~~~~~ 297 (710)
.....+...|++++|+..|+++.+.... + ...+..+...|...|++++|+..+++.... +.. ....++..
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 3344566666667776666666665322 2 245556666666666666666666655432 100 11334455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHCCCC
Q 005178 298 LGKMFGESGDYDGIRYVLQEMKSLGV-QPN----LVVYNTLLEAMGKAGK-------------PGLARSLFDEMVESGLT 359 (710)
Q Consensus 298 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~-------------~~~A~~~~~~m~~~g~~ 359 (710)
+...|...|++++|...+++..+... ..+ ..++..+...+...|+ .+++.+.
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~---------- 158 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA---------- 158 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH----------
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH----------
Confidence 55555555555555555555443100 011 1134444444444444 0000000
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCC--
Q 005178 360 PDEKTLTALIKIYGKARWAKDALELWERMREN----KW-PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPD-- 432 (710)
Q Consensus 360 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-- 432 (710)
+++|...+++..+. +. ......+..+...|...|++++|.+.+++..+.....++
T Consensus 159 ------------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 220 (338)
T 3ro2_A 159 ------------------LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA 220 (338)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred ------------------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChH
Confidence 44444444443221 00 001234555666666677777777666665432100011
Q ss_pred --HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-cC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC
Q 005178 433 --NYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA-IN----VMGCTCLIQCLGKARRIDDLVRVFGVSIDR----GVKP 501 (710)
Q Consensus 433 --~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p 501 (710)
..++..+...|...|++++|...+++..+.... .+ ..++..+...|...|++++|+..++++.+. +-.+
T Consensus 221 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 300 (338)
T 3ro2_A 221 AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRI 300 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcH
Confidence 236667777777777777777777776542110 11 456677777777888888888887777642 1111
Q ss_pred -CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCc
Q 005178 502 -DDRLCGCLLSVVSLCETSEDVGKVITCLQQANPK 535 (710)
Q Consensus 502 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 535 (710)
...++..+..+|...|++++|.+.++++.++.+.
T Consensus 301 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 301 GEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 1235667777888888888888888877766543
No 67
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.44 E-value=7e-12 Score=127.91 Aligned_cols=280 Identities=15% Similarity=0.077 Sum_probs=188.6
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC-CCH
Q 005178 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELD----NITYSTIITCAKRCNLFDEAIEWFERMYKT----GLM-PDE 257 (710)
Q Consensus 187 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-~~~ 257 (710)
...+......+...|++++|...|+++.+.... + ...+..+...+...|++++|++.+++..+. +.. ...
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 345566677889999999999999999986322 3 367778888999999999999999987653 211 125
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCC--------------------HHHHH
Q 005178 258 VTYSAILDVYAKSGKVEEVLSLYERGVASGW-KPD----PIAFSVLGKMFGESGD--------------------YDGIR 312 (710)
Q Consensus 258 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~-~~~----~~~~~~li~~~~~~g~--------------------~~~A~ 312 (710)
.++..+...|...|++++|...+++..+..- ..+ ..++..+...|...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 6788899999999999999999998865310 122 3477888889999999 78888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-
Q 005178 313 YVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN- 391 (710)
Q Consensus 313 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 391 (710)
..+++..... ...++. ......+..+...|...|++++|...+++..+.
T Consensus 164 ~~~~~a~~~~---------------~~~~~~---------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 213 (338)
T 3ro2_A 164 DLYEENLSLV---------------TALGDR---------------AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 213 (338)
T ss_dssp HHHHHHHHHH---------------HHHTCH---------------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---------------HhcCCH---------------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 7777654310 000000 000123333444444445555555444444321
Q ss_pred ---CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 005178 392 ---KW-PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPD----NYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463 (710)
Q Consensus 392 ---~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 463 (710)
+. .....++..+...|...|++++|...+++..+......+ ..++..+...|...|++++|...++++.+..
T Consensus 214 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 293 (338)
T 3ro2_A 214 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 293 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 00 001235666777777888888888887776543210111 5577788888899999999999988876531
Q ss_pred ----C-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005178 464 ----V-AINVMGCTCLIQCLGKARRIDDLVRVFGVSIDR 497 (710)
Q Consensus 464 ----~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 497 (710)
. .....++..+...|.+.|++++|...++++.+.
T Consensus 294 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 294 QELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 1 111447778888999999999999999988764
No 68
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.41 E-value=5.4e-11 Score=110.06 Aligned_cols=166 Identities=16% Similarity=0.137 Sum_probs=100.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005178 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405 (710)
Q Consensus 326 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 405 (710)
+..+|..+...|.+.|++++|++.|++.++.. +-+...+..+..+|.+.|++++|+..+......... +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 34455556666666666666666666655542 234555555666666666666666666665554322 4555555556
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHH
Q 005178 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485 (710)
Q Consensus 406 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 485 (710)
.+...++++.|.+.+.+..... +.+...+..+..+|...|++++|+..|++..+.... +..+|..+..+|.+.|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN--TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHH
Confidence 6666666666666666666554 455666666666666666666666666666664322 4556666666666667777
Q ss_pred HHHHHHHHHHH
Q 005178 486 DLVRVFGVSID 496 (710)
Q Consensus 486 ~A~~~~~~m~~ 496 (710)
+|+..|++.++
T Consensus 159 ~A~~~~~~al~ 169 (184)
T 3vtx_A 159 EAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 77776666665
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.41 E-value=1.5e-11 Score=128.79 Aligned_cols=227 Identities=9% Similarity=-0.030 Sum_probs=113.5
Q ss_pred HccCChHHHHHHHHHHHHC--CCCCCH--HHHHHHHH--HHHHcCCHHHHH-----------HHHHHHHHcCCCCC----
Q 005178 198 RFGRQFQLIEQLANEMVSN--EIELDN--ITYSTIIT--CAKRCNLFDEAI-----------EWFERMYKTGLMPD---- 256 (710)
Q Consensus 198 ~~~g~~~~A~~l~~~m~~~--g~~p~~--~~~~~li~--~~~~~g~~~~A~-----------~~~~~m~~~g~~~~---- 256 (710)
.+.+++++|..+++++.+. .+..|. ..|-.++. .....+.++.+. +.++.+.......+
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l~ 102 (383)
T 3ulq_A 23 IRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLE 102 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHHH
Confidence 5678888888888887653 222233 33333333 112223333444 55555543210000
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CC-----
Q 005178 257 EVTYSAILDVYAKSGKVEEVLSLYERGVAS----GWKP-DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGV-QP----- 325 (710)
Q Consensus 257 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p----- 325 (710)
...+......+...|++++|+..|++..+. +-.+ ...++..+...|...|++++|...+++..+.-. .+
T Consensus 103 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 182 (383)
T 3ulq_A 103 YYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIR 182 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHH
Confidence 011222455566777777777777777653 1011 234566677777777777777777766654200 01
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CC
Q 005178 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL-TPD----EKTLTALIKIYGKARWAKDALELWERMREN----KW-PM 395 (710)
Q Consensus 326 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~~ 395 (710)
...+++.+...|...|++++|...|++..+... ..+ ..++..+...|...|++++|+..|++..+. +. +.
T Consensus 183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~ 262 (383)
T 3ulq_A 183 LLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPS 262 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchh
Confidence 123555566666666666666666665543200 011 124444555555555555555555554431 11 11
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005178 396 DFILYNTLLNMCADIGLVEEAERLFEDMK 424 (710)
Q Consensus 396 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 424 (710)
...++..+...|...|++++|.+.+++..
T Consensus 263 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 263 LPQAYFLITQIHYKLGKIDKAHEYHSKGM 291 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 23344444444555555555555444443
No 70
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.39 E-value=5.5e-09 Score=115.52 Aligned_cols=410 Identities=12% Similarity=0.102 Sum_probs=229.5
Q ss_pred cCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCC---hHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCH--
Q 005178 165 KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQ---FQLIEQLANEMVSNE-IELDNITYSTIITCAKRCNLF-- 238 (710)
Q Consensus 165 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g-~~p~~~~~~~li~~~~~~g~~-- 238 (710)
..++.+..+|+.+... ++.....|...+..-.+.|+ ++.+..+|++.+... ..|+...|...+....+.++.
T Consensus 80 ~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~ 157 (679)
T 4e6h_A 80 KQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIIT 157 (679)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTT
T ss_pred CcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccccc
Confidence 4577777888887776 56677778888888777777 888888888887653 136777777777655554443
Q ss_pred ------HHHHHHHHHHHHc-CC-CC-CHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005178 239 ------DEAIEWFERMYKT-GL-MP-DEVTYSAILDVYA---------KSGKVEEVLSLYERGVASGWKPDPIAFSVLGK 300 (710)
Q Consensus 239 ------~~A~~~~~~m~~~-g~-~~-~~~~~~~li~~~~---------~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 300 (710)
+...++|+..+.. |. .+ +...|...+.... ..++++.+..+|++++......-..+|.....
T Consensus 158 ~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~ 237 (679)
T 4e6h_A 158 GGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQ 237 (679)
T ss_dssp THHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 3344677766553 55 44 3467777776543 23446777788888775311111223322111
Q ss_pred HHHh-------------cCCHHHHHHHHHHHHH--CCCC---------------C-----C---HHHHHHHHHHHHHcC-
Q 005178 301 MFGE-------------SGDYDGIRYVLQEMKS--LGVQ---------------P-----N---LVVYNTLLEAMGKAG- 341 (710)
Q Consensus 301 ~~~~-------------~g~~~~A~~~~~~m~~--~g~~---------------p-----~---~~~~~~li~~~~~~g- 341 (710)
.-.. ..+++.|..++.++.. .++. | + ...|...+.---..+
T Consensus 238 fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~ 317 (679)
T 4e6h_A 238 WEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKL 317 (679)
T ss_dssp HHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTT
T ss_pred HHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCc
Confidence 1100 1233444555544322 1111 0 0 123444443322221
Q ss_pred ------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 005178 342 ------KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL-ELWERMRENKWPMDFILYNTLLNMCADIGLVE 414 (710)
Q Consensus 342 ------~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 414 (710)
..+.+..+|++.+.. ++-+...|...+..+...|+.++|. ++|++.... ++.+...|...+......|+++
T Consensus 318 ~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e 395 (679)
T 4e6h_A 318 ELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIP 395 (679)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHH
T ss_pred cccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHH
Confidence 123455667776654 2345666766677677777777775 777777654 3445666666777777777777
Q ss_pred HHHHHHHHHHhCC---------CCCC------------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHH
Q 005178 415 EAERLFEDMKLSD---------YCKP------------DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTC 473 (710)
Q Consensus 415 ~A~~~~~~~~~~~---------~~~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 473 (710)
.|.++|+.+.... . .| ....|...+....+.|+.+.|..+|.++++.-.......|..
T Consensus 396 ~aR~iyek~l~~l~~~~~~~~~~-~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~ 474 (679)
T 4e6h_A 396 EIETTILSCIDRIHLDLAALMED-DPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLE 474 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhc-cCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 7777777766521 0 13 123577777777777777777777777776411112334433
Q ss_pred HHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCc---HHHHHHHHHhhcCC
Q 005178 474 LIQCLGKAR-RIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPK---LVAFLNLIEDNSTG 549 (710)
Q Consensus 474 li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~L~~~~~~ 549 (710)
.+..-.+.| +.+.|.++|+..++. ..-+...|...+......|+.+.|..+|+.+....|+ ...++..+......
T Consensus 475 ~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~ 553 (679)
T 4e6h_A 475 NAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESK 553 (679)
T ss_dssp HHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 333333433 477777777777754 2224555666666666777777777777777776662 33444444433333
Q ss_pred cccHHHHHHHHHHhc-cCCCChhhHHHHHHHHH
Q 005178 550 FENIKEEFRNVIKDT-EVDARRPFCNCLIDICR 581 (710)
Q Consensus 550 ~~~~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~ 581 (710)
.| ..+.+..+.+++ ...|+..-...+.+-|.
T Consensus 554 ~G-~~~~~~~v~~R~~~~~P~~~~~~~f~~ry~ 585 (679)
T 4e6h_A 554 VG-SLNSVRTLEKRFFEKFPEVNKLEEFTNKYK 585 (679)
T ss_dssp TC-CSHHHHHHHHHHHHHSTTCCHHHHHHHHTC
T ss_pred cC-CHHHHHHHHHHHHHhCCCCcHHHHHHHHhc
Confidence 34 334455555443 22344344444444443
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.38 E-value=1.9e-12 Score=130.80 Aligned_cols=250 Identities=15% Similarity=0.121 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 005178 257 EVTYSAILDVYAKSGKVEEVLSLYERGVAS-------GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVV 329 (710)
Q Consensus 257 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 329 (710)
..++..+...|...|++++|+.+|+++.+. ..+....++..+...|...|++++|...+++..+..
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------- 99 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR------- 99 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-------
Confidence 344555555555566666666666555441 111223344455555555555555555555544320
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC-CCCHHHHHH
Q 005178 330 YNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN------KW-PMDFILYNT 402 (710)
Q Consensus 330 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~-~~~~~~~~~ 402 (710)
..............+..+...|...|++++|...|+++.+. +. ......+..
T Consensus 100 ---------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 158 (311)
T 3nf1_A 100 ---------------------EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNN 158 (311)
T ss_dssp ---------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ---------------------HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 00000000111233444444555555555555555544432 11 112334555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhC------CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-------CCCc---
Q 005178 403 LLNMCADIGLVEEAERLFEDMKLS------DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL-------GVAI--- 466 (710)
Q Consensus 403 li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~p--- 466 (710)
+...|...|++++|.++|+++.+. +..+....++..+...|...|++++|...++++.+. ...+
T Consensus 159 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 238 (311)
T 3nf1_A 159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK 238 (311)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchH
Confidence 566666666666666666665543 110222345666667777777777777777766642 0111
Q ss_pred ----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCc
Q 005178 467 ----NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPK 535 (710)
Q Consensus 467 ----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 535 (710)
....+..+...+...+.+.+|...++...... ..+..++..+..+|.+.|++++|.++|+++.++.|+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 239 PIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp CHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 11223333344455666666667776665421 113447778888888899999999988888776653
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.37 E-value=2.3e-11 Score=130.79 Aligned_cols=210 Identities=17% Similarity=0.128 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005178 274 EEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY-DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352 (710)
Q Consensus 274 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 352 (710)
++++..+++..... +.+...+..+...|...|++ ++|+..|++..+.. +-+..+|..+..+|.+.|++++|.+.|++
T Consensus 85 ~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 85 EKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444444433321 23445555555555555555 55555555555432 12344555555555555555555555555
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc--------CCHHH
Q 005178 353 MVESGLTPDEKTLTALIKIYGKA---------RWAKDALELWERMRENKWPMDFILYNTLLNMCADI--------GLVEE 415 (710)
Q Consensus 353 m~~~g~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~--------g~~~~ 415 (710)
..+. .|+...+..+...|... |++++|+..|++..+.... +...|..+..+|... |++++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 5543 24444455555555554 5555555555555544222 344555555555554 55555
Q ss_pred HHHHHHHHHhCCCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005178 416 AERLFEDMKLSDYCK---PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491 (710)
Q Consensus 416 A~~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 491 (710)
|++.|++..+.. + .+...|..+..+|...|++++|...|+++.+.... +...+..+..++...|++++|+..+
T Consensus 240 A~~~~~~al~~~--p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 240 ALSAYAQAEKVD--RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHC--GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC--CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555555555433 2 34555555555555555555555555555543221 3444555555555555555555433
No 73
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.37 E-value=1.4e-10 Score=121.04 Aligned_cols=229 Identities=7% Similarity=-0.080 Sum_probs=153.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-----CHHHHH
Q 005178 368 LIKIYGKARWAKDALELWERMRENKW-PMD----FILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP-----DNYSYT 437 (710)
Q Consensus 368 li~~~~~~g~~~~A~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~ 437 (710)
....+...|++++|+..|++..+... .++ ..++..+...|...|+++.|...+.+..+...-.+ ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34445667777777777777765311 012 34566677777778888888777777654311011 245677
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHc----CCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 005178 438 AMLNIYGSGGNVDNAIELFEEMSEL----GVA-INVMGCTCLIQCLGKARRIDDLVRVFGVSID-----RGVKPDDRLCG 507 (710)
Q Consensus 438 ~li~~~~~~g~~~~A~~~~~~m~~~----~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~ 507 (710)
.+..+|...|++++|...|++..+. +-. ....++..+..+|...|++++|+..|++.++ .... ...++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHH
Confidence 7788888888888888888777652 111 1234677778888888888888888888775 3322 255677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHh-----CCcHHHHHHHHHhhcCCcc--cHHHHHHHHHHhccCCCChh-hHHHHHHH
Q 005178 508 CLLSVVSLCETSEDVGKVITCLQQA-----NPKLVAFLNLIEDNSTGFE--NIKEEFRNVIKDTEVDARRP-FCNCLIDI 579 (710)
Q Consensus 508 ~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~~~~~~~L~~~~~~~~--~~~~~a~~~~~~~~~~~~~~-~~~~l~~~ 579 (710)
.+..+|.+.|++++|..+++++.++ +|.....+..|+..+...+ ...+++..++++....++.. .+..++..
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Confidence 7888888888888888888888775 4445555566665554433 23666777777654433332 67789999
Q ss_pred HHhCCCHHHHHHHHHHHH
Q 005178 580 CRNRNLNERAHELLYLGT 597 (710)
Q Consensus 580 ~~~~g~~~~A~~~~~~~~ 597 (710)
|...|++++|.+.|+++.
T Consensus 346 y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 999999999999999875
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.36 E-value=7.2e-12 Score=126.54 Aligned_cols=169 Identities=16% Similarity=0.119 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC
Q 005178 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVES-------GLTPDEKTLTALIKIYGKARWAKDALELWERMREN------KW 393 (710)
Q Consensus 327 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~ 393 (710)
..++..+...+...|++++|..+|+++.+. ........+..+...|...|++++|...|++..+. +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 345666666666666666666666666542 11122344555555566666666666666555432 11
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----
Q 005178 394 -PMDFILYNTLLNMCADIGLVEEAERLFEDMKLS------DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL---- 462 (710)
Q Consensus 394 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 462 (710)
......+..+...|...|++++|.+.|+++.+. +..+.....+..+...|...|++++|..+++++.+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 112334444455555555555555555544432 100112233444444444555555555555444432
Q ss_pred --CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005178 463 --GVAI-NVMGCTCLIQCLGKARRIDDLVRVFGVSI 495 (710)
Q Consensus 463 --~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 495 (710)
+..| ...++..+..+|...|++++|+..|+++.
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 222 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL 222 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1011 12234444444444444444444444444
No 75
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.36 E-value=4e-11 Score=128.93 Aligned_cols=182 Identities=10% Similarity=-0.040 Sum_probs=102.8
Q ss_pred CHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHH
Q 005178 361 DEKTLTALIKIYGKARWA-KDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAM 439 (710)
Q Consensus 361 ~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 439 (710)
+...+..+...|...|++ ++|++.|++..+.... +...|..+..+|...|++++|.+.|++..+.. |+...+..+
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~l 176 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC---KNKVSLQNL 176 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC---CCHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCHHHHHHH
Confidence 444455555555555555 5555555555544222 34555555555555666666666665555543 345555555
Q ss_pred HHHHHhC---------CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCC--
Q 005178 440 LNIYGSG---------GNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA--------RRIDDLVRVFGVSIDRGVK-- 500 (710)
Q Consensus 440 i~~~~~~---------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~-- 500 (710)
...|... |++++|+..|+++.+.... +...|..+..+|... |++++|+..|++.++....
T Consensus 177 g~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 255 (474)
T 4abn_A 177 SMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS 255 (474)
T ss_dssp HHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcc
Confidence 5556555 6666666666666554322 455566666666655 6666666666666653210
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhc
Q 005178 501 PDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNS 547 (710)
Q Consensus 501 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~ 547 (710)
-+...|..+..+|...|++++|.+.|+++.+++|++......++.++
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~ 302 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLL 302 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 14556666666666666666666666666666666655555554443
No 76
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.31 E-value=2.9e-10 Score=109.24 Aligned_cols=209 Identities=9% Similarity=-0.018 Sum_probs=162.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005178 325 PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404 (710)
Q Consensus 325 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 404 (710)
.|...+..+...+...|++++|+..|++.++....++...+..+..+|...|++++|+..|++..+.... +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 4667888899999999999999999999988753367777777899999999999999999999886443 667888899
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCCH-------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcC---HHHHHHH
Q 005178 405 NMCADIGLVEEAERLFEDMKLSDYCKPDN-------YSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN---VMGCTCL 474 (710)
Q Consensus 405 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~l 474 (710)
.+|...|++++|++.|++..+.. +.+. ..|..+...+...|++++|+..|+++++. .|+ ...|..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l 159 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHH
Confidence 99999999999999999998876 4556 56888888899999999999999999874 454 5677777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhh
Q 005178 475 IQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDN 546 (710)
Q Consensus 475 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 546 (710)
..+|...| ..+++++...+. .+...|.... ....+.+++|...++++.+++|++..+...|+..
T Consensus 160 ~~~~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 160 GVLFYNNG-----ADVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHH-----HHHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 77776554 344555544322 2334444333 2345668999999999999999998887777653
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.28 E-value=4.6e-10 Score=117.10 Aligned_cols=312 Identities=10% Similarity=-0.019 Sum_probs=143.7
Q ss_pred CcHHHHHHHHHHH--HccCChHHHHHHHHHHHHC--CCCCC--HHHHHHHHHH--HHHcCCHHHHH---------HHHHH
Q 005178 185 METIFYNVTMKSL--RFGRQFQLIEQLANEMVSN--EIELD--NITYSTIITC--AKRCNLFDEAI---------EWFER 247 (710)
Q Consensus 185 ~~~~~~~~li~~~--~~~g~~~~A~~l~~~m~~~--g~~p~--~~~~~~li~~--~~~~g~~~~A~---------~~~~~ 247 (710)
|+..+-+.+-..| .+.+++++|..+++++... .+..| ...|-.++.. ..-.+.+..+. +.++.
T Consensus 8 ~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ 87 (378)
T 3q15_A 8 PSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLET 87 (378)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHH
Confidence 4555556666666 6788888888888887552 22223 2333333331 11111222222 44444
Q ss_pred HHHcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005178 248 MYKTGLMPD----EVTYSAILDVYAKSGKVEEVLSLYERGVASGW-KPD----PIAFSVLGKMFGESGDYDGIRYVLQEM 318 (710)
Q Consensus 248 m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m 318 (710)
+.......+ ...+......+...|++++|+..|++..+.-- .++ ..++..+...|...|++++|...+++.
T Consensus 88 i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~a 167 (378)
T 3q15_A 88 IETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQA 167 (378)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 432110001 01122333445566777777777766654310 011 345555666666666666666666655
Q ss_pred HHCC--C---CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 005178 319 KSLG--V---QP-NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL-TPDEKTLTALIKIYGKARWAKDALELWERMREN 391 (710)
Q Consensus 319 ~~~g--~---~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 391 (710)
.+.. . .+ ...+++.+..+|...|++++|.+.|++..+..- ..+.
T Consensus 168 l~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~----------------------------- 218 (378)
T 3q15_A 168 LDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQND----------------------------- 218 (378)
T ss_dssp HHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-----------------------------
T ss_pred HHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCH-----------------------------
Confidence 4310 0 00 123455555555666666666665555443100 0010
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--
Q 005178 392 KWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL-----SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV-- 464 (710)
Q Consensus 392 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-- 464 (710)
.....++..+..+|...|++++|++.|++..+ .. +....++..+...|.+.|++++|...+++..+...
T Consensus 219 --~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 294 (378)
T 3q15_A 219 --RFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP--DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR 294 (378)
T ss_dssp --HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT
T ss_pred --HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC--hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 00112344444444444555555444444443 22 22244455555555555555555555555544211
Q ss_pred --CcCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 005178 465 --AINVMGCTCLIQCLGKARR---IDDLVRVFGVSIDRGVKPD-DRLCGCLLSVVSLCETSEDVGKVITCLQQA 532 (710)
Q Consensus 465 --~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 532 (710)
......+..+...|...|+ +++|+.++++ .+..|+ ...+..+...|...|++++|.+.|+++.++
T Consensus 295 ~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 295 SHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp CCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1112233344444444555 4455555443 111122 124445555666666666666666655443
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.28 E-value=2.7e-09 Score=110.90 Aligned_cols=264 Identities=13% Similarity=-0.016 Sum_probs=123.4
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHH
Q 005178 232 AKRCNLFDEAIEWFERMYKTGLMPDE----VTYSAILDVYAKSGKVEEVLSLYERGVASGW-KPD----PIAFSVLGKMF 302 (710)
Q Consensus 232 ~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~-~~~----~~~~~~li~~~ 302 (710)
+...|++++|...+++........+. .+++.+...|...|++++|...+++.....- ..+ ..++..+...+
T Consensus 24 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 103 (373)
T 1hz4_A 24 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 103 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 33445555555555444443211111 1334444445555555555555555433100 001 12234445555
Q ss_pred HhcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHH
Q 005178 303 GESGDYDGIRYVLQEMKSL----GVQ--P-NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT----PDEKTLTALIKI 371 (710)
Q Consensus 303 ~~~g~~~~A~~~~~~m~~~----g~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~~~~~li~~ 371 (710)
...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++..+.... ....++..+...
T Consensus 104 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 183 (373)
T 1hz4_A 104 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 183 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHH
Confidence 5566666666655555431 111 1 1224444555566666666666666665542111 012345555556
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC--CHHHHH----HHHHHHHHcCCHHHHHHHHHHHHhCCCCC--CCHHHHHHHHHHH
Q 005178 372 YGKARWAKDALELWERMRENKWPM--DFILYN----TLLNMCADIGLVEEAERLFEDMKLSDYCK--PDNYSYTAMLNIY 443 (710)
Q Consensus 372 ~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~----~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~li~~~ 443 (710)
+...|++++|...+++.......+ ...... ..+..+...|++++|...+++........ .....+..+...+
T Consensus 184 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~ 263 (373)
T 1hz4_A 184 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ 263 (373)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHH
Confidence 666666666666666654321111 111111 12233556666666666666655432100 0122345555666
Q ss_pred HhCCCHHHHHHHHHHHHHc----CCCcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005178 444 GSGGNVDNAIELFEEMSEL----GVAINV-MGCTCLIQCLGKARRIDDLVRVFGVSI 495 (710)
Q Consensus 444 ~~~g~~~~A~~~~~~m~~~----~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~ 495 (710)
...|++++|...++++... |..++. ..+..+..++...|+.++|...+++..
T Consensus 264 ~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 264 ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 6666666666666665431 111111 244444555556666666666665554
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.27 E-value=2e-09 Score=111.89 Aligned_cols=274 Identities=11% Similarity=-0.035 Sum_probs=197.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH----HHH
Q 005178 260 YSAILDVYAKSGKVEEVLSLYERGVASGWKPDP----IAFSVLGKMFGESGDYDGIRYVLQEMKSLGV-QPNL----VVY 330 (710)
Q Consensus 260 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~~~ 330 (710)
.......+...|++++|...+++.....-..+. .+++.+...|...|++++|...+++...... ..+. .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 344455677899999999999998875422222 2566777888999999999999998765210 1122 346
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC----CCC--CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----CCHHH
Q 005178 331 NTLLEAMGKAGKPGLARSLFDEMVES----GLT--PD-EKTLTALIKIYGKARWAKDALELWERMRENKWP----MDFIL 399 (710)
Q Consensus 331 ~~li~~~~~~g~~~~A~~~~~~m~~~----g~~--p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----~~~~~ 399 (710)
..+...+...|++++|...+++..+. +.. |. ...+..+...|...|++++|...+++..+.... .....
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 67888899999999999999988653 222 22 345667888899999999999999998764322 12456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCC-HHHHH----HHHHHHHhCCCHHHHHHHHHHHHHcCCCc---CHHHH
Q 005178 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPD-NYSYT----AMLNIYGSGGNVDNAIELFEEMSELGVAI---NVMGC 471 (710)
Q Consensus 400 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~ 471 (710)
+..+...+...|++++|...+++.........+ ..... ..+..+...|++++|...+++.......+ ....+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 778888999999999999999988754210111 22111 23445789999999999999887643221 13356
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHhC
Q 005178 472 TCLIQCLGKARRIDDLVRVFGVSIDR----GVKPDD-RLCGCLLSVVSLCETSEDVGKVITCLQQAN 533 (710)
Q Consensus 472 ~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 533 (710)
..+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|...++.+..+.
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~ 323 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA 323 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 77888999999999999999988642 222222 256667788889999999999998886553
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.26 E-value=3.7e-10 Score=104.00 Aligned_cols=166 Identities=15% Similarity=0.065 Sum_probs=92.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 005178 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYG 444 (710)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~ 444 (710)
+..+...+...|++++|...|+++.+... .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...|.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA--PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHH
Confidence 33444445555555555555555544322 244555555555555566666666555555543 345555555666666
Q ss_pred hCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 005178 445 SGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGK 524 (710)
Q Consensus 445 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 524 (710)
..|++++|...++++.+... .+...+..+...|...|++++|+..++++.+... .+...+..+..+|...|++++|.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHHHHH
Confidence 66666666666666555422 2455555566666666666666666666654321 234556666666666666666666
Q ss_pred HHHHHHHhCCc
Q 005178 525 VITCLQQANPK 535 (710)
Q Consensus 525 ~~~~~~~~~p~ 535 (710)
.++.+.+..|+
T Consensus 166 ~~~~~~~~~~~ 176 (186)
T 3as5_A 166 HFKKANELDEG 176 (186)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHcCCC
Confidence 66666555444
No 81
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.24 E-value=3.2e-10 Score=126.88 Aligned_cols=164 Identities=13% Similarity=0.078 Sum_probs=76.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 005178 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIY 443 (710)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~ 443 (710)
.|+.|..+|.+.|++++|++.|++.++.... +...|+.+..+|.+.|++++|++.|++..+.. +.+...|..+..+|
T Consensus 11 al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~~~~a~~nLg~~l 87 (723)
T 4gyw_A 11 SLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence 3444444444444444444444444443221 34444444444444455555555554444443 33444455555555
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 005178 444 GSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVG 523 (710)
Q Consensus 444 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 523 (710)
...|++++|++.|++.++.... +...|..+..+|.+.|++++|+..|++.++.... +...+..+..+|...|++++|.
T Consensus 88 ~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHHH
Confidence 5555555555555554443221 3444555555555555555555555555442211 2334444555555555555555
Q ss_pred HHHHHHHHh
Q 005178 524 KVITCLQQA 532 (710)
Q Consensus 524 ~~~~~~~~~ 532 (710)
+.++++.++
T Consensus 166 ~~~~kal~l 174 (723)
T 4gyw_A 166 ERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555544443
No 82
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.23 E-value=1.2e-09 Score=100.52 Aligned_cols=163 Identities=15% Similarity=0.058 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005178 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCA 408 (710)
Q Consensus 329 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 408 (710)
.|..+...+...|++++|...|+++.+.. +.+...+..+...|...|++++|...++++.+... .+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence 34445555555556666655555554432 23445555555566666666666666666555422 24555666666666
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 005178 409 DIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLV 488 (710)
Q Consensus 409 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 488 (710)
..|++++|.+.++++.+.. +.+...+..+...|...|++++|..+++++.+... .+...+..+...|...|++++|.
T Consensus 88 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN--PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC--cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHHHH
Confidence 6666666666666666554 45566666666666666666666666666665432 24566666666666777777777
Q ss_pred HHHHHHHH
Q 005178 489 RVFGVSID 496 (710)
Q Consensus 489 ~~~~~m~~ 496 (710)
..++++.+
T Consensus 165 ~~~~~~~~ 172 (186)
T 3as5_A 165 PHFKKANE 172 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77666654
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.21 E-value=3.3e-09 Score=101.76 Aligned_cols=193 Identities=7% Similarity=-0.091 Sum_probs=124.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 005178 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLI 475 (710)
Q Consensus 396 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 475 (710)
|...+......+...|++++|++.|++..+... +++...+..+..+|...|++++|+..|++..+.... +...|..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTN-NQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 455666666667777777777777777766551 256666666777777777777777777777764322 455667777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCc--HHHHHHHHHhh
Q 005178 476 QCLGKARRIDDLVRVFGVSIDRGVKPDD-------RLCGCLLSVVSLCETSEDVGKVITCLQQANPK--LVAFLNLIEDN 546 (710)
Q Consensus 476 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~L~~~ 546 (710)
.+|...|++++|+..|++.++.... +. ..|..+...+...|++++|++.|+++.+.+|+ ...++..+|.+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 7777777777777777777653221 23 34666777778888888888888888888888 77777777776
Q ss_pred cCCcccHHHHHHHHHHhc-cC-CCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 005178 547 STGFENIKEEFRNVIKDT-EV-DARRPFCNCLIDICRNRNLNERAHELLYLGTLY 599 (710)
Q Consensus 547 ~~~~~~~~~~a~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 599 (710)
+...| ..+++++ .. ..+...|..+ .....|.+++|...|+++++.
T Consensus 163 ~~~~~------~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 163 FYNNG------ADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHH------HHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH------HHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhc
Confidence 54333 2222221 11 1122233332 234556788999999988754
No 84
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.20 E-value=8.9e-10 Score=123.34 Aligned_cols=162 Identities=14% Similarity=0.076 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005178 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCA 408 (710)
Q Consensus 329 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 408 (710)
+|+.|...|.+.|++++|++.|++.++.. +-+...|..+..+|.+.|++++|+..|++.++.... +...|..+..+|.
T Consensus 11 al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~l~ 88 (723)
T 4gyw_A 11 SLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNTLK 88 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 44445555555555555555555544432 223444555555555555555555555555443222 3445555555555
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 005178 409 DIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLV 488 (710)
Q Consensus 409 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 488 (710)
..|++++|++.|++..+.. +.+...|+.+..+|...|++++|+..|+++++.... +...|..+..+|...|++++|.
T Consensus 89 ~~g~~~~A~~~~~kAl~l~--P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 89 EMQDVQGALQCYTRAIQIN--PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTHH
T ss_pred HcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHHH
Confidence 5555555555555555544 344555555555555555555555555555553221 3455555555555555555555
Q ss_pred HHHHHHH
Q 005178 489 RVFGVSI 495 (710)
Q Consensus 489 ~~~~~m~ 495 (710)
+.+++++
T Consensus 166 ~~~~kal 172 (723)
T 4gyw_A 166 ERMKKLV 172 (723)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.18 E-value=4.6e-10 Score=111.26 Aligned_cols=200 Identities=15% Similarity=0.095 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC------CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----CC--C
Q 005178 399 LYNTLLNMCADIGLVEEAERLFEDMKLS------DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL-----GV--A 465 (710)
Q Consensus 399 ~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~--~ 465 (710)
++..+...|...|++++|+..++++.+. +..+....++..+...|...|++++|...|+++.+. +. .
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 124 (283)
T 3edt_B 45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHP 124 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 3444444444444444444444444332 100122334555555555555555555555554432 00 1
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHhC-----
Q 005178 466 INVMGCTCLIQCLGKARRIDDLVRVFGVSIDR------GVKPD-DRLCGCLLSVVSLCETSEDVGKVITCLQQAN----- 533 (710)
Q Consensus 466 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----- 533 (710)
....++..+...|...|++++|+.+|+++++. +-.|+ ..++..+..+|...|++++|..+++++.+..
T Consensus 125 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 204 (283)
T 3edt_B 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEF 204 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 12344555555555555555555555555532 11121 2345555556666666666666665554431
Q ss_pred ----CcHHHHHHHHHhh-----cCCcccHHHHHHHHHHhccCC-CCh-hhHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 005178 534 ----PKLVAFLNLIEDN-----STGFENIKEEFRNVIKDTEVD-ARR-PFCNCLIDICRNRNLNERAHELLYLGTL 598 (710)
Q Consensus 534 ----p~~~~~~~~L~~~-----~~~~~~~~~~a~~~~~~~~~~-~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 598 (710)
+.....+..++.. .........++..+++..... |+. .++..++.+|...|++++|.++|+++++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 205 GSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp SSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1111121111111 011122334444444444322 222 2788899999999999999999998764
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.13 E-value=1.2e-09 Score=109.43 Aligned_cols=175 Identities=11% Similarity=0.000 Sum_probs=103.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-C----HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhCCCCCCC----H
Q 005178 364 TLTALIKIYGKARWAKDALELWERMRENKWPM-D----FILYNTLLNMCADI-GLVEEAERLFEDMKLSDYCKPD----N 433 (710)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~----~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~----~ 433 (710)
+|+.+..+|.+.|++++|+..|++..+..... + ..+++.+..+|... |++++|+..|++..+...-..+ .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 44445555555555555555555444321000 1 23566677777775 8888888777776653210011 3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---
Q 005178 434 YSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINV------MGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR--- 504 (710)
Q Consensus 434 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--- 504 (710)
.++..+...|...|++++|+..|+++.+....... ..|..+..++...|++++|+..|++.++ +.|+..
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~ 236 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSR 236 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C--------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcH
Confidence 46777788888888888888888888775433221 1566677778888888888888887764 233211
Q ss_pred ---HHHHHHHHHH--hcCChHHHHHHHHHHHHhCCcHHHHH
Q 005178 505 ---LCGCLLSVVS--LCETSEDVGKVITCLQQANPKLVAFL 540 (710)
Q Consensus 505 ---~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p~~~~~~ 540 (710)
.+..++.+|. ..+++++|++.|+++..++|....++
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~ 277 (292)
T 1qqe_A 237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITIL 277 (292)
T ss_dssp -HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHH
Confidence 2344555554 35567777777777777777664443
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.10 E-value=6.9e-10 Score=109.94 Aligned_cols=98 Identities=18% Similarity=0.237 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CC
Q 005178 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSL------GVQP-NLVVYNTLLEAMGKAGKPGLARSLFDEMVES------GL 358 (710)
Q Consensus 292 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~ 358 (710)
..++..+...|...|++++|...++++.+. +-.| ...++..+...|...|++++|...|+++.+. .-
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 445556666666666666666666665542 1111 2234555555555555555555555555432 00
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005178 359 -TPDEKTLTALIKIYGKARWAKDALELWERMR 389 (710)
Q Consensus 359 -~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 389 (710)
+....++..+...|...|++++|...|++..
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 154 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRAL 154 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1112334444444444444444444444443
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.09 E-value=2.1e-08 Score=98.44 Aligned_cols=191 Identities=10% Similarity=0.012 Sum_probs=134.2
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005178 346 ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKW-PMDFILYNTLLNMCADIGLVEEAERLFEDMK 424 (710)
Q Consensus 346 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 424 (710)
|+..|++..+.+ .++..++..+..++...|++++|++++.+.++.+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 677777776654 45566666778888888888888888888876654 2256677778888888999999999998887
Q ss_pred hCCCCCC-----CHHHHHHHHHH--HHh--CCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005178 425 LSDYCKP-----DNYSYTAMLNI--YGS--GGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSI 495 (710)
Q Consensus 425 ~~~~~~~-----~~~~~~~li~~--~~~--~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 495 (710)
+. .| +..+...|+.+ ... .+++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.
T Consensus 164 ~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 64 35 24555555555 222 33888999999998764 3443343444457888999999999988765
Q ss_pred HC-----CC---CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHH
Q 005178 496 DR-----GV---KP-DDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIE 544 (710)
Q Consensus 496 ~~-----~~---~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~ 544 (710)
+. +. .| |..+...++......|+ +|.++++++.+..|+++.+.++-.
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~~ 294 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHHQE 294 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHHHH
Confidence 42 00 23 44466566666666776 888999999999999887765543
No 89
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.08 E-value=2.6e-08 Score=98.88 Aligned_cols=219 Identities=9% Similarity=0.027 Sum_probs=165.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH----HhC--
Q 005178 375 ARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG--LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIY----GSG-- 446 (710)
Q Consensus 375 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~----~~~-- 446 (710)
....++|+++++.++..+.. +...|+.--..+...| ++++++++++.+...+ +.+..+|+.-...+ ...
T Consensus 46 ~e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n--Pk~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 46 EEYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN--EKNYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp TCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC--TTCCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC--cccHHHHHHHHHHHHHHHHhccc
Confidence 33446788888888776444 5666777667777777 8888888888888776 56666776555555 445
Q ss_pred -CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----
Q 005178 447 -GNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID--DLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCET----- 518 (710)
Q Consensus 447 -g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~----- 518 (710)
+++++++.+++.+.+...+ |..+|+.-...+.+.|.++ +++++++++++.+.. |...|+.-..++.+.|.
T Consensus 123 ~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhh
Confidence 7888999999999886654 8888888888888888888 999999999886655 67778777777777776
Q ss_pred -hHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHHHHhcc-CC---C-ChhhHHHHHHHHHhCCCHHHHHHH
Q 005178 519 -SEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTE-VD---A-RRPFCNCLIDICRNRNLNERAHEL 592 (710)
Q Consensus 519 -~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~~~~-~~---~-~~~~~~~l~~~~~~~g~~~~A~~~ 592 (710)
++++.+++..+...+|++..++..++..+...|...+++.++..++- .. + ....+..++++|.+.|+.++|.++
T Consensus 201 ~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 201 TIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 88999999999999999999887776655444544555666666532 21 3 344788999999999999999999
Q ss_pred HHHHHH
Q 005178 593 LYLGTL 598 (710)
Q Consensus 593 ~~~~~~ 598 (710)
++.+.+
T Consensus 281 ~~~l~~ 286 (306)
T 3dra_A 281 YDLLKS 286 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998764
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.05 E-value=3.1e-08 Score=97.25 Aligned_cols=247 Identities=11% Similarity=0.022 Sum_probs=165.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 005178 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAK 379 (710)
Q Consensus 300 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 379 (710)
+-..-.|.+..++.-...+.. ......-..+..+|...|+++.. ..-.|....+..+.. |...+
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT---
T ss_pred HHHHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc---
Confidence 444557888777773332211 11223333455777777776532 112344434443333 33322
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 005178 380 DALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459 (710)
Q Consensus 380 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 459 (710)
|+..|++..+.+ .++...+..+..++...|++++|++++.+....+...-+...+..++..|.+.|+.+.|.+.+++|
T Consensus 85 -a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 -NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp -CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 778888887765 446666678889999999999999999998776521146788899999999999999999999999
Q ss_pred HHcCCCc-----CHHHHHHHHHH--HHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005178 460 SELGVAI-----NVMGCTCLIQC--LGKAR--RIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQ 530 (710)
Q Consensus 460 ~~~~~~p-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 530 (710)
.+. .| +..+...|+.+ ....| ++.+|+.+|+++.+. .|+...-..++.++.+.|++++|.+.++.+.
T Consensus 163 ~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 163 TNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred Hhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 884 45 35566666666 33334 899999999998764 3553333445558999999999999999877
Q ss_pred Hh----------CCcHHHHH-HHHHhhcCCcccHHHHHHHHHHhc-cCCCChhh
Q 005178 531 QA----------NPKLVAFL-NLIEDNSTGFENIKEEFRNVIKDT-EVDARRPF 572 (710)
Q Consensus 531 ~~----------~p~~~~~~-~~L~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~ 572 (710)
+. +|++..++ +++...+. .|+ ++.+++.++ ...|+.+.
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~-lgk---~a~~l~~qL~~~~P~hp~ 288 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALM-QGL---DTEDLTNQLVKLDHEHAF 288 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHH-TTC---TTHHHHHHHHHTTCCCHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHH-hCh---HHHHHHHHHHHhCCCChH
Confidence 65 58888877 55322222 232 667777765 45676653
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.02 E-value=1.9e-08 Score=86.71 Aligned_cols=132 Identities=15% Similarity=0.117 Sum_probs=74.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 005178 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479 (710)
Q Consensus 400 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 479 (710)
+..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|..+++++.+.+. .+...+..+...+.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC--CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHH
Confidence 4445555555566666666665555543 34455555555556666666666666666555432 23455555566666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCc
Q 005178 480 KARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPK 535 (710)
Q Consensus 480 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 535 (710)
..|++++|+.+++++..... .+...+..+..++...|++++|...++++.+.+|+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 66666666666666554321 13445555666666666666666666666555553
No 92
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.99 E-value=3.3e-07 Score=98.29 Aligned_cols=358 Identities=9% Similarity=-0.023 Sum_probs=202.2
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHc-CCCC-CHHHHHHHHHHHH----HcCCH
Q 005178 201 RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNL-FDEAIEWFERMYKT-GLMP-DEVTYSAILDVYA----KSGKV 273 (710)
Q Consensus 201 g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~-g~~~-~~~~~~~li~~~~----~~g~~ 273 (710)
|+++.+..+|++.+.. .|+...|...+....+.+. .+....+|+..+.. |..+ +...|...+..+. ..+++
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 8899999999998875 4788899888887766663 45667788877765 5433 6778888777654 34678
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005178 274 EEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353 (710)
Q Consensus 274 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 353 (710)
+.+.++|++.+......-...|......-.. .....+..++.+.. +.+..|..+++++
T Consensus 106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~-~~~~~~~~~~~~~~---------------------~~y~~ar~~y~~~ 163 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMGSLSELWKDFENFELE-LNKITGKKIVGDTL---------------------PIFQSSFQRYQQI 163 (493)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH-HCHHHHHHHHHHHH---------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChhhhHHHHHHHHHHHHHH-hccccHHHHHHHHh---------------------HHHHHHHHHHHHH
Confidence 8888999998873111111222222211111 11122222222111 1233334444333
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005178 354 VESGLTPDEKTLTALIKIYGKAR-------WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426 (710)
Q Consensus 354 ~~~g~~p~~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 426 (710)
...--..+...|...+..-...+ ..+.+..+|+++.... +.+...|...+.-+...|+.+.|..+|++....
T Consensus 164 ~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 164 QPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM 242 (493)
T ss_dssp HHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 32100012334444443322211 0334566777776642 335667777777777777888888888877765
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC---------C---CcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005178 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG---------V---AINVMGCTCLIQCLGKARRIDDLVRVFGVS 494 (710)
Q Consensus 427 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---------~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 494 (710)
+.+...|.. |......++. ++.+.+.- . ......|...+..+.+.|..+.|..+|+++
T Consensus 243 ---P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A 312 (493)
T 2uy1_A 243 ---SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL 312 (493)
T ss_dssp ---CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred ---CCcHHHHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 233322322 2211111111 22222110 0 011345777777777788899999999988
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHHHHhccCCCChhhH
Q 005178 495 IDRGVKPDDRLCGCLLSVVSLCE-TSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFC 573 (710)
Q Consensus 495 ~~~~~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 573 (710)
.. ...+..+|......-...+ +.+.|..+|+.+.+..|+...++..++......| ..+.|..+++... ....+|
T Consensus 313 -~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~-~~~~aR~l~er~~--k~~~lw 387 (493)
T 2uy1_A 313 -GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIG-DEENARALFKRLE--KTSRMW 387 (493)
T ss_dssp -TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHSC--CBHHHH
T ss_pred -hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHH--HHHHHH
Confidence 32 1234445543332222333 5888999999988877776655433333222223 3566777877762 245689
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHH
Q 005178 574 NCLIDICRNRNLNERAHELLYLGTL 598 (710)
Q Consensus 574 ~~l~~~~~~~g~~~~A~~~~~~~~~ 598 (710)
...++.-..+|+.+.+..+++++..
T Consensus 388 ~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 388 DSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999998864
No 93
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.97 E-value=2.5e-08 Score=99.69 Aligned_cols=25 Identities=12% Similarity=-0.077 Sum_probs=11.7
Q ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHH
Q 005178 330 YNTLLEAMGKA-GKPGLARSLFDEMV 354 (710)
Q Consensus 330 ~~~li~~~~~~-g~~~~A~~~~~~m~ 354 (710)
++.+...|... |++++|+..|++..
T Consensus 120 ~~~lg~~~~~~lg~~~~A~~~~~~Al 145 (292)
T 1qqe_A 120 KFELGEILENDLHDYAKAIDCYELAG 145 (292)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 34444444443 55555555544443
No 94
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.97 E-value=1e-08 Score=115.25 Aligned_cols=187 Identities=10% Similarity=-0.068 Sum_probs=156.2
Q ss_pred HhcCCHHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 005178 373 GKARWAKDALELWERMR--------ENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYG 444 (710)
Q Consensus 373 ~~~g~~~~A~~~~~~m~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~ 444 (710)
...|++++|++.+++.. +.. +.+...+..+..+|...|++++|++.|+++.+.. +.+...|..+..+|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV--GWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--cchHHHHHHHHHHHH
Confidence 67899999999999998 432 3366788889999999999999999999999876 678899999999999
Q ss_pred hCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 005178 445 SGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGK 524 (710)
Q Consensus 445 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 524 (710)
..|++++|...|+++++.... +...|..+..+|.+.|++++ +..|+++++.+.. +...|..+..+|.+.|++++|.+
T Consensus 479 ~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999986543 67889999999999999999 9999999975433 56688899999999999999999
Q ss_pred HHHHHHHhCCcHHHHHHHHHhhcCCcc-------cHHHHHHHHHHhcc
Q 005178 525 VITCLQQANPKLVAFLNLIEDNSTGFE-------NIKEEFRNVIKDTE 565 (710)
Q Consensus 525 ~~~~~~~~~p~~~~~~~~L~~~~~~~~-------~~~~~a~~~~~~~~ 565 (710)
.|+++.+++|++..+...++.++...+ +..++|...+..+.
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~ 603 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP 603 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence 999999999999988888887764422 23555555555543
No 95
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.96 E-value=4.9e-08 Score=84.04 Aligned_cols=128 Identities=19% Similarity=0.162 Sum_probs=74.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 005178 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYG 444 (710)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~ 444 (710)
|..+...|...|++++|..+|+++.+.+.. +...+..+...+...|++++|..+++++.... +.+...+..+...|.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHH
Confidence 344455555555555555555555544222 44555555556666666666666666665544 345556666666666
Q ss_pred hCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005178 445 SGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496 (710)
Q Consensus 445 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 496 (710)
..|++++|..+++++.+... .+...+..++..|.+.|++++|...|+++.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 66666666666666655432 2455566666666666666666666666654
No 96
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.94 E-value=1.9e-09 Score=95.86 Aligned_cols=139 Identities=12% Similarity=0.035 Sum_probs=99.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCH
Q 005178 405 NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484 (710)
Q Consensus 405 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 484 (710)
.++...|++++|+..+....... +.+...+..+...|.+.|++++|+..|++.++.... +..+|..+..+|.+.|++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~--p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSP--RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENT 81 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSH--HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcChHHHHHHHHHHhcccC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCch
Confidence 34445677788888877776543 234455667778888888888888888888775433 677888888888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH-HHHHHHhCCcHHHHHHHHHhhc
Q 005178 485 DDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKV-ITCLQQANPKLVAFLNLIEDNS 547 (710)
Q Consensus 485 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~-~~~~~~~~p~~~~~~~~L~~~~ 547 (710)
++|+..|++.++.... +...|..+..+|.+.|++++|.+. ++++.+++|++..++.+.+..+
T Consensus 82 ~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll 144 (150)
T 4ga2_A 82 DKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLL 144 (150)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 8888888888774322 456777788888888887766654 5788888888877776665543
No 97
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.94 E-value=3e-08 Score=93.53 Aligned_cols=132 Identities=9% Similarity=-0.021 Sum_probs=95.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Q 005178 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK 480 (710)
Q Consensus 401 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 480 (710)
+.+..+|...|++++|+..|++..+.. +.+...+..+..+|...|++++|...|+++++.... +..+|..+..+|..
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKA--PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence 347778888899999999998888876 567888888888899999999999999988885433 57788888887766
Q ss_pred cCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHH
Q 005178 481 ARR--IDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLV 537 (710)
Q Consensus 481 ~g~--~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 537 (710)
.|. .+.+...++.... ..|....+..+..++...|++++|+..|+++.+++|+..
T Consensus 135 ~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp HHHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred HhHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH
Confidence 554 3445555555432 222222344455666778889999999999999999754
No 98
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.93 E-value=1.3e-07 Score=92.65 Aligned_cols=193 Identities=10% Similarity=-0.082 Sum_probs=119.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-CHHHH
Q 005178 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD---EKTLTALIKIYGKARWAKDALELWERMRENKWP-M-DFILY 400 (710)
Q Consensus 326 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~-~~~~~ 400 (710)
+...+..+...+.+.|++++|+..|+++++.. +.+ ...+..+..+|.+.|++++|+..|++..+.... + ....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 45566666677777777777777777777652 112 455666677777777777777777777664321 1 23455
Q ss_pred HHHHHHHHH--------cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHH
Q 005178 401 NTLLNMCAD--------IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472 (710)
Q Consensus 401 ~~li~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 472 (710)
..+..++.. .|++++|+..|+++.+.. +.+......+.. +..+.. --...+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~--------------~~~~~~----~~~~~~~ 152 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQK--------------IRELRA----KLARKQY 152 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHH--------------HHHHHH----HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHH--------------HHHHHH----HHHHHHH
Confidence 556666666 677777777777766654 222222222111 111100 0011245
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhc----------CChHHHHHHHHHHHHhCCcHHHH
Q 005178 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKP--DDRLCGCLLSVVSLC----------ETSEDVGKVITCLQQANPKLVAF 539 (710)
Q Consensus 473 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~ 539 (710)
.+...|.+.|++++|+..|+++++..... ....+..+..+|... |++++|...|+++.+..|+...+
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 66778888999999999998888643221 234666777777765 88889999999999888887543
No 99
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.92 E-value=5.1e-08 Score=91.91 Aligned_cols=135 Identities=12% Similarity=-0.004 Sum_probs=97.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhC
Q 005178 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446 (710)
Q Consensus 367 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 446 (710)
.+..+|.+.|++++|+..|++..+.... +...+..+..+|...|++++|+..|++..+.. +.+..+|..+...|...
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHH
Confidence 3777888889999999999888876443 67888888888999999999999999988876 67788888888887665
Q ss_pred CC--HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 005178 447 GN--VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGC 508 (710)
Q Consensus 447 g~--~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 508 (710)
|. ...+...++.... ..|....+..+..++...|++++|+..|++.++ +.|+......
T Consensus 136 ~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~ 195 (208)
T 3urz_A 136 AEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKT 195 (208)
T ss_dssp HHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHH
Confidence 54 3445555555543 223333445556667778899999999998876 5677554433
No 100
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.91 E-value=6.9e-07 Score=88.63 Aligned_cols=231 Identities=9% Similarity=-0.009 Sum_probs=145.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----Hhc---CCHH
Q 005178 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG--KPGLARSLFDEMVESGLTPDEKTLTALIKIY----GKA---RWAK 379 (710)
Q Consensus 309 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~----~~~---g~~~ 379 (710)
++|+.+++.++... +-+..+|+.--..+...| ++++++++++.++... +.+..+|+.-...+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 45555555555532 113334555555555555 5666666666655542 22333333322222 333 5667
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCC------HHH
Q 005178 380 DALELWERMRENKWPMDFILYNTLLNMCADIGLVE--EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN------VDN 451 (710)
Q Consensus 380 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------~~~ 451 (710)
+++.+++.+.+...+ +..+|+.-.-.+.+.|.++ ++++.++++.+.+ +.|...|+.-...+...|. +++
T Consensus 128 ~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 128 REFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 777777777765444 6666666666666667666 7777777777766 5677777776666666665 778
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCC-C-CCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 005178 452 AIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD-LVRVFGVSIDRG-V-KPDDRLCGCLLSVVSLCETSEDVGKVITC 528 (710)
Q Consensus 452 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~-~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 528 (710)
+++.+++++...+. |...|+-+...+.+.|+..+ +..+.+++.+.+ . ..+...+..+..+|.+.|+.++|.++++.
T Consensus 205 El~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 205 ELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 88888888776554 77778777777777777544 444555554322 1 22556677778888888888888888888
Q ss_pred HHH-hCCcHHHHHHHHHh
Q 005178 529 LQQ-ANPKLVAFLNLIED 545 (710)
Q Consensus 529 ~~~-~~p~~~~~~~~L~~ 545 (710)
+.+ .+|-...+++..+.
T Consensus 284 l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 284 LKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHTTCGGGHHHHHHHHH
T ss_pred HHhccChHHHHHHHHHHh
Confidence 875 68877777665554
No 101
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.89 E-value=6e-08 Score=106.97 Aligned_cols=164 Identities=9% Similarity=-0.003 Sum_probs=88.8
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 005178 376 RWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIEL 455 (710)
Q Consensus 376 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 455 (710)
|++++|++.|++..+.... +...+..+...|...|++++|.+.|++..+.. +.+...|..+..+|...|++++|...
T Consensus 3 g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH--PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp ------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS--TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4555666666655544222 45556666666666666666666666666554 44566666666666666666666666
Q ss_pred HHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHHh
Q 005178 456 FEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLC---ETSEDVGKVITCLQQA 532 (710)
Q Consensus 456 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~ 532 (710)
|++..+.... +...|..+..+|.+.|++++|++.|++..+.... +...+..+..++... |+.++|.+.++++.+.
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 6666654322 4556666666666666666666666666653221 344566666666666 6666666666666666
Q ss_pred CCcHHHHHHHHH
Q 005178 533 NPKLVAFLNLIE 544 (710)
Q Consensus 533 ~p~~~~~~~~L~ 544 (710)
+|+....+.+++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 666544444444
No 102
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.88 E-value=6.4e-08 Score=94.83 Aligned_cols=190 Identities=9% Similarity=-0.103 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CCHHHHH
Q 005178 362 EKTLTALIKIYGKARWAKDALELWERMRENKWPMD---FILYNTLLNMCADIGLVEEAERLFEDMKLSDYCK-PDNYSYT 437 (710)
Q Consensus 362 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~ 437 (710)
...+..+...+.+.|++++|+..|+++.+.... + ...+..+..+|.+.|++++|+..|++..+...-. .....+.
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 344444455555555555555555555544221 2 3444455555555555555555555555432101 1133444
Q ss_pred HHHHHHHh--------CCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005178 438 AMLNIYGS--------GGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCL 509 (710)
Q Consensus 438 ~li~~~~~--------~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 509 (710)
.+..+|.. .|++++|+..|+++++.... +......+.. +..+... -...+..+
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~--------------~~~~~~~----~~~~~~~l 154 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQK--------------IRELRAK----LARKQYEA 154 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHH--------------HHHHHHH----HHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHH--------------HHHHHHH----HHHHHHHH
Confidence 45555555 55555555555555543211 1111111100 0000000 00113567
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCc---HHHHHHHHHhhcCCcc---------cHHHHHHHHHHh-ccCCCChh
Q 005178 510 LSVVSLCETSEDVGKVITCLQQANPK---LVAFLNLIEDNSTGFE---------NIKEEFRNVIKD-TEVDARRP 571 (710)
Q Consensus 510 l~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~L~~~~~~~~---------~~~~~a~~~~~~-~~~~~~~~ 571 (710)
..+|...|++++|+..|+.+.+..|+ ...++..++.++...| +..++|...+++ +...|+.+
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence 88899999999999999999999888 4556667776655331 255666666655 34455543
No 103
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.87 E-value=5.5e-07 Score=90.25 Aligned_cols=219 Identities=12% Similarity=0.022 Sum_probs=146.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhC-C-CHH
Q 005178 374 KARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG-LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG-G-NVD 450 (710)
Q Consensus 374 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~~~ 450 (710)
+.+..++|+++++.++..+.. +..+|+.--..+...| .+++++++++.+.... +.+..+|+.-...+... + +++
T Consensus 66 ~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n--PKny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN--LKSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHCCSCCH
T ss_pred hCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCCChH
Confidence 334456677777777766444 5566666666666667 4788888888877766 56777777766666665 6 777
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----
Q 005178 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRID--------DLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCET---- 518 (710)
Q Consensus 451 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~---- 518 (710)
+++.+++++++...+ |..+|+.-...+.+.|.++ ++++.++++++.... |...|+....++.+.+.
T Consensus 143 ~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 143 SEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccc
Confidence 888888888776544 6777777666666666666 888888888876554 66777777777777765
Q ss_pred ---hHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccH-------------------HHHHHHHHHhccCC--------C
Q 005178 519 ---SEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENI-------------------KEEFRNVIKDTEVD--------A 568 (710)
Q Consensus 519 ---~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~-------------------~~~a~~~~~~~~~~--------~ 568 (710)
++++.++++++...+|++..++..+...+...+.- .....++...+... +
T Consensus 221 ~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLP 300 (349)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSC
T ss_pred hHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCC
Confidence 67888888888888898888775544322211111 23344444433211 2
Q ss_pred ChhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005178 569 RRPFCNCLIDICRNRNLNERAHELLYLGT 597 (710)
Q Consensus 569 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 597 (710)
....+.-|+++|...|+.++|.++++...
T Consensus 301 s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 301 VPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 33477889999999999999999999864
No 104
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.85 E-value=2.5e-08 Score=112.09 Aligned_cols=172 Identities=6% Similarity=-0.103 Sum_probs=142.9
Q ss_pred HHcCCHHHHHHHHHHHH--------hCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 005178 408 ADIGLVEEAERLFEDMK--------LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479 (710)
Q Consensus 408 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 479 (710)
...|++++|++.+++.. +.. +.+...+..+..+|...|++++|+..|+++.+.+.. +...|..+..+|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF--SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc--ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHH
Confidence 67899999999999998 544 567789999999999999999999999999986433 6789999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHH
Q 005178 480 KARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRN 559 (710)
Q Consensus 480 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~ 559 (710)
+.|++++|+..|+++++.... +...|..+..+|.+.|++++ ++.|+++.+++|++..++..+|.++...| ..++|..
T Consensus 479 ~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g-~~~~A~~ 555 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEG-DRVGAVR 555 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcC-CHHHHHH
Confidence 999999999999999975432 45678899999999999999 99999999999999999999998888777 4566666
Q ss_pred HHHh-ccCCCChh-hHHHHHHHHHhCCC
Q 005178 560 VIKD-TEVDARRP-FCNCLIDICRNRNL 585 (710)
Q Consensus 560 ~~~~-~~~~~~~~-~~~~l~~~~~~~g~ 585 (710)
.+++ +...|+.. .|..++.++...|+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 6655 56778754 77788888877666
No 105
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.83 E-value=1.1e-07 Score=81.26 Aligned_cols=112 Identities=12% Similarity=0.001 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005178 433 NYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSV 512 (710)
Q Consensus 433 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 512 (710)
...+......|.+.|++++|+..|++.++.... +...|..+..+|.+.|++++|+..|++.++.+.. +...|..+..+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHH
Confidence 456778888899999999999999998886533 6788888999999999999999999999875432 56688889999
Q ss_pred HHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhh
Q 005178 513 VSLCETSEDVGKVITCLQQANPKLVAFLNLIEDN 546 (710)
Q Consensus 513 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 546 (710)
|...|++++|.+.|+++.+++|++..+...|+.+
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 9999999999999999999999999888777765
No 106
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.82 E-value=9e-06 Score=87.12 Aligned_cols=344 Identities=10% Similarity=-0.028 Sum_probs=177.5
Q ss_pred cCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCC-hHHHHHHHHHHHHC-CC-CCCHHHHHHHHHHHH----HcCC
Q 005178 165 KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQ-FQLIEQLANEMVSN-EI-ELDNITYSTIITCAK----RCNL 237 (710)
Q Consensus 165 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~-g~-~p~~~~~~~li~~~~----~~g~ 237 (710)
++++.+..+|++.... .|++..|...+....+.++ .+....+|+..+.. |. ..+...|...+..+. ..++
T Consensus 28 ~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~ 104 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTR 104 (493)
T ss_dssp TCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHH
T ss_pred CCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHH
Confidence 5799999999998764 4699999999998887774 46677888887764 43 236788888887654 3467
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005178 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS-------------GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304 (710)
Q Consensus 238 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-------------g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 304 (710)
.+.+..+|++.+.....--...|......-... +.+..|..+++.+...--..+...|...+..-..
T Consensus 105 ~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~ 184 (493)
T 2uy1_A 105 IEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEME 184 (493)
T ss_dssp HHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhc
Confidence 889999999999853221223343333221111 1122333334333321000123344444443222
Q ss_pred cC--C-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 005178 305 SG--D-----YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARW 377 (710)
Q Consensus 305 ~g--~-----~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 377 (710)
.+ - .+.+..+|+++.... +.+...|...+.-+.+.|+.+.|..+|++.... +.+...+. .|+....
T Consensus 185 ~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e 257 (493)
T 2uy1_A 185 NGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMD 257 (493)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTT
T ss_pred CCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcc
Confidence 11 0 234555666666532 334556666666666667777777777766665 22222221 1222111
Q ss_pred HHHHHHHHHHHHhCC---------CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Q 005178 378 AKDALELWERMRENK---------WPM---DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445 (710)
Q Consensus 378 ~~~A~~~~~~m~~~~---------~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 445 (710)
.++ +++.+.+.- ..+ ...+|...+..+.+.+..+.|..+|+.. +.. ..+...|......-..
T Consensus 258 ~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~--~~~~~v~i~~A~lE~~ 331 (493)
T 2uy1_A 258 EEA---VYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE--GVGPHVFIYCAFIEYY 331 (493)
T ss_dssp CTH---HHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS--CCCHHHHHHHHHHHHH
T ss_pred hhH---HHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC--CCChHHHHHHHHHHHH
Confidence 111 122221110 000 1133444455454555666666666666 221 1233333322222222
Q ss_pred CC-CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 005178 446 GG-NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGK 524 (710)
Q Consensus 446 ~g-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 524 (710)
.+ +.+.|..+|+...+.-. -+...|...++...+.|+.+.|..+|+++. -....|...+..-...|+.+.+.+
T Consensus 332 ~~~d~~~ar~ife~al~~~~-~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~ 405 (493)
T 2uy1_A 332 ATGSRATPYNIFSSGLLKHP-DSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRE 405 (493)
T ss_dssp HHCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HCCChHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHH
Confidence 22 46666666666655321 123444555555566666666666666641 134455555555555566666666
Q ss_pred HHHHHH
Q 005178 525 VITCLQ 530 (710)
Q Consensus 525 ~~~~~~ 530 (710)
++++..
T Consensus 406 v~~~~~ 411 (493)
T 2uy1_A 406 LVDQKM 411 (493)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
No 107
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.80 E-value=5.5e-07 Score=85.02 Aligned_cols=129 Identities=13% Similarity=0.089 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhCCCCCCHHHHH
Q 005178 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG----KVEEVLSLYERGVASGWKPDPIAFS 296 (710)
Q Consensus 221 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~g~~~~~~~~~ 296 (710)
+...+..+...|...+++++|+++|++..+.| +...+..|...|.. + ++++|+++|++..+.| +...+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 34444444444444444444444444444432 33444444444443 3 4444444444444432 334444
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHC
Q 005178 297 VLGKMFGE----SGDYDGIRYVLQEMKSLGVQ-PNLVVYNTLLEAMGK----AGKPGLARSLFDEMVES 356 (710)
Q Consensus 297 ~li~~~~~----~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~ 356 (710)
.|...|.. .+++++|+..|++..+.|.. .+...+..|...|.. .+++++|+..|++..+.
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 44444443 44444555544444443210 013344444444444 44444444444444443
No 108
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.80 E-value=6e-07 Score=84.75 Aligned_cols=126 Identities=18% Similarity=0.066 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCCCCHHHHHH
Q 005178 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR----WAKDALELWERMRENKWPMDFILYNT 402 (710)
Q Consensus 327 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~~~~~~~~~~~~ 402 (710)
...+..|...|...+++++|+..|++..+.| +...+..|...|.. + ++++|++.|++..+.| +...+..
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~ 90 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIV 90 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 3333334444444444444444444443332 22333333333333 3 3444444444443332 2333333
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHhCCCCCC--CHHHHHHHHHHHHh----CCCHHHHHHHHHHHHH
Q 005178 403 LLNMCAD----IGLVEEAERLFEDMKLSDYCKP--DNYSYTAMLNIYGS----GGNVDNAIELFEEMSE 461 (710)
Q Consensus 403 li~~~~~----~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~ 461 (710)
|...|.. .+++++|++.|++..+.+ +. +...+..|..+|.. .+++++|...|++..+
T Consensus 91 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 91 LARVLVNRQAGATDVAHAITLLQDAARDS--ESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HHHHHTCGGGSSCCHHHHHHHHHHHTSST--TSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCccCHHHHHHHHHHHHHcC--CCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 3333333 344444444444444332 10 13444444444444 4444444444444444
No 109
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.80 E-value=6.4e-08 Score=88.48 Aligned_cols=158 Identities=9% Similarity=0.040 Sum_probs=78.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHHcC
Q 005178 333 LLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM-CADIG 411 (710)
Q Consensus 333 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g 411 (710)
+...+.+.|++++|...|++..+.. +.+...+..+..+|.+.|++++|+..|++..+... +...+..+... +...+
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHHhhc
Confidence 3344444555555555554444321 22334444455555555555555555554443321 22222111111 11111
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHhcCCHHHHHHH
Q 005178 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI-NVMGCTCLIQCLGKARRIDDLVRV 490 (710)
Q Consensus 412 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~ 490 (710)
...+|+..+++..+.. +.+...+..+..+|...|++++|...|+++++....+ +...+..+...|...|+.++|+..
T Consensus 89 ~~~~a~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 89 AESPELKRLEQELAAN--PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp TSCHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred ccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 2223455566555544 4456666666666666666666666666666644322 244566666666666666666666
Q ss_pred HHHHH
Q 005178 491 FGVSI 495 (710)
Q Consensus 491 ~~~m~ 495 (710)
|++.+
T Consensus 167 y~~al 171 (176)
T 2r5s_A 167 YRRQL 171 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 110
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.78 E-value=2.7e-08 Score=88.27 Aligned_cols=143 Identities=10% Similarity=-0.019 Sum_probs=93.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCH
Q 005178 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNV 449 (710)
Q Consensus 370 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 449 (710)
..+...|++++|+..+......... +...+..+...|.+.|++++|++.|++..+.. +.+..+|..+..+|...|++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCch
Confidence 3444556677777777766543111 23345566777777788888888877777765 56777777788888888888
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 005178 450 DNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRV-FGVSIDRGVKP-DDRLCGCLLSVVSLCET 518 (710)
Q Consensus 450 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~~~~p-~~~~~~~ll~~~~~~g~ 518 (710)
++|+..|++.++.... +...|..+...|.+.|++++|.+. +++.++. .| +..+|......+...|+
T Consensus 82 ~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCc
Confidence 8888888877775432 566777777778888877766654 4666663 33 34455555555555553
No 111
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.78 E-value=4.6e-07 Score=86.48 Aligned_cols=191 Identities=9% Similarity=-0.074 Sum_probs=116.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHH
Q 005178 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT-P-DEKTLTALIKIYGKARWAKDALELWERMRENKWPMDF--ILYN 401 (710)
Q Consensus 326 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~ 401 (710)
+...+..+...+.+.|++++|+..|+++++.... + ....+..+..+|.+.|++++|+..|+++.+....... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 4455666777888899999999999998875311 1 1356777888888999999999999998876433211 2344
Q ss_pred HHHHHHHH------------------cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 005178 402 TLLNMCAD------------------IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463 (710)
Q Consensus 402 ~li~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 463 (710)
.+..++.. .|++++|...|+++.+.. +.+...+..+.... .+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~----------~~~~~~---- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLV----------FLKDRL---- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHH----------HHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHH----------HHHHHH----
Confidence 44555544 345556666666655543 22222221111000 000000
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcH
Q 005178 464 VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD--DRLCGCLLSVVSLCETSEDVGKVITCLQQANPKL 536 (710)
Q Consensus 464 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 536 (710)
......+...|.+.|++++|+..|+++++...... ...+..+..+|.+.|+.++|.+.++.+....|+.
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 00112455667788888888888888876422111 2356677888888888888888888777766653
No 112
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.76 E-value=2e-07 Score=92.79 Aligned_cols=164 Identities=9% Similarity=-0.029 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHH
Q 005178 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYN-TLLN 405 (710)
Q Consensus 327 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~li~ 405 (710)
...+..+...+...|++++|...|++..+.. +.+...+..+...|.+.|++++|...++++.... |+..... ....
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~~ 193 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHHH
Confidence 3445556666666666666666666666542 2345556666666666667777766666665442 2332222 2222
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHhcCCH
Q 005178 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI-NVMGCTCLIQCLGKARRI 484 (710)
Q Consensus 406 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~ 484 (710)
.+...++.++|...+++..... +.+...+..+...|...|++++|...|.++.+..... +...+..++..|...|+.
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~--P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAEN--PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHhhcccCccHHHHHHHHhcC--CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 3445566666677777766655 5666777777777777777777777777777644321 255677777777777777
Q ss_pred HHHHHHHHHHH
Q 005178 485 DDLVRVFGVSI 495 (710)
Q Consensus 485 ~~A~~~~~~m~ 495 (710)
++|...|++.+
T Consensus 272 ~~a~~~~r~al 282 (287)
T 3qou_A 272 DALASXYRRQL 282 (287)
T ss_dssp CHHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 77777776654
No 113
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.76 E-value=8.1e-07 Score=84.71 Aligned_cols=188 Identities=11% Similarity=0.013 Sum_probs=130.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCH-HHHH
Q 005178 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQ-P-NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT-PDE-KTLT 366 (710)
Q Consensus 291 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~-~~~~ 366 (710)
+...+..+...+.+.|++++|+..|+++.+.... + ....+..+..++.+.|++++|+..|+++++.... +.. ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 4566777888899999999999999999875321 1 1357888999999999999999999999876311 111 2444
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 005178 367 ALIKIYGK------------------ARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428 (710)
Q Consensus 367 ~li~~~~~------------------~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 428 (710)
.+..++.+ .|+.++|+..|+++.+.... +...+.+.... ..+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----------~~~~~~~~---- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----------VFLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----------HHHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----------HHHHHHHH----
Confidence 45555554 57899999999999987433 33333221111 00111111
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005178 429 CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI--NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRG 498 (710)
Q Consensus 429 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 498 (710)
.....+...|.+.|++++|+..|+++++..... ....+..+..+|.+.|+.++|++.++.+...+
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 112346677888999999999999988753221 12567888889999999999999999887654
No 114
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.74 E-value=1.2e-07 Score=86.59 Aligned_cols=162 Identities=9% Similarity=0.036 Sum_probs=120.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH-
Q 005178 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNI- 442 (710)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~- 442 (710)
.+..+...+.+.|++++|+..|++..+.... +...+..+..++...|++++|+..|+++.... + +...+..+...
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p-~~~~~~~~~~~~ 83 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEY--Q-DNSYKSLIAKLE 83 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--C-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--C-ChHHHHHHHHHH
Confidence 3455667788899999999999987765332 67788889999999999999999999887654 3 55444333222
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHH
Q 005178 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP-DDRLCGCLLSVVSLCETSED 521 (710)
Q Consensus 443 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~ 521 (710)
+...+...+|...+++..+.... +...+..+..++...|++++|+..|+++++....+ +...+..+..++...|+.++
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HHhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 22223334578888888875432 57888889999999999999999999988754433 34578888889999999999
Q ss_pred HHHHHHHHH
Q 005178 522 VGKVITCLQ 530 (710)
Q Consensus 522 a~~~~~~~~ 530 (710)
|...|++..
T Consensus 163 A~~~y~~al 171 (176)
T 2r5s_A 163 IASKYRRQL 171 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998887754
No 115
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.74 E-value=2.4e-07 Score=92.13 Aligned_cols=165 Identities=12% Similarity=0.035 Sum_probs=112.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHH-HH
Q 005178 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY-TA 438 (710)
Q Consensus 360 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~ 438 (710)
.+...+..+...+.+.|++++|...|++..+.... +...+..+...|...|++++|...++++.... |+.... ..
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~---p~~~~~~~~ 190 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD---QDTRYQGLV 190 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG---CSHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh---cchHHHHHH
Confidence 34455666777777788888888888887776433 56677777778888888888888888776653 343322 22
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC
Q 005178 439 MLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP-DDRLCGCLLSVVSLCE 517 (710)
Q Consensus 439 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g 517 (710)
....+...++.++|...+++..+.... +...+..+...|...|++++|+..|++++...... +...+..++.+|...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 333355667777777777777765432 56777777788888888888888888877643221 1456777777777778
Q ss_pred ChHHHHHHHHHH
Q 005178 518 TSEDVGKVITCL 529 (710)
Q Consensus 518 ~~~~a~~~~~~~ 529 (710)
+.++|...|++.
T Consensus 270 ~~~~a~~~~r~a 281 (287)
T 3qou_A 270 TGDALASXYRRQ 281 (287)
T ss_dssp TTCHHHHHHHHH
T ss_pred CCCcHHHHHHHH
Confidence 777777777664
No 116
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.72 E-value=3.2e-07 Score=101.16 Aligned_cols=156 Identities=13% Similarity=0.031 Sum_probs=117.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005178 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384 (710)
Q Consensus 305 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 384 (710)
.|++++|...|++..+.. +-+...|..+...+...|++++|.+.|++..+.. +.+...+..+..+|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999987753 3357788899999999999999999999998764 44677888899999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhC---CCHHHHHHHHHHHHH
Q 005178 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG---GNVDNAIELFEEMSE 461 (710)
Q Consensus 385 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~ 461 (710)
|++..+.... +...+..+..+|...|++++|.+.|++..+.. +.+...+..+..+|... |++++|...++++.+
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9999886433 67888899999999999999999999998876 56788899999999999 999999999999988
Q ss_pred cCCC
Q 005178 462 LGVA 465 (710)
Q Consensus 462 ~~~~ 465 (710)
.+..
T Consensus 157 ~~p~ 160 (568)
T 2vsy_A 157 QGVG 160 (568)
T ss_dssp HTCC
T ss_pred cCCc
Confidence 6543
No 117
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.72 E-value=2.7e-07 Score=92.89 Aligned_cols=54 Identities=4% Similarity=-0.050 Sum_probs=27.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005178 301 MFGESGDYDGIRYVLQEMKSL----GVQP-NLVVYNTLLEAMGKAGKPGLARSLFDEMV 354 (710)
Q Consensus 301 ~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 354 (710)
.|...|++++|...|.+..+. |-.. -..+|+.+...|.+.|++++|+..|++..
T Consensus 45 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al 103 (307)
T 2ifu_A 45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKAS 103 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 444555555555555554431 1000 02245555566666666666666666554
No 118
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.71 E-value=1e-07 Score=95.99 Aligned_cols=164 Identities=12% Similarity=0.067 Sum_probs=103.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCC----CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CCC--HHHHHHHHH
Q 005178 371 IYGKARWAKDALELWERMRENKW----PM-DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC--KPD--NYSYTAMLN 441 (710)
Q Consensus 371 ~~~~~g~~~~A~~~~~~m~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~--~~~~~~li~ 441 (710)
.|...|++++|...|.+..+... .. -..+|+.+...|...|++++|+..|++..+...- .+. ..++..+..
T Consensus 45 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 124 (307)
T 2ifu_A 45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 124 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445555555555554433110 00 1235556666677777777777777665442100 111 356777788
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCc-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHH
Q 005178 442 IYGSGGNVDNAIELFEEMSELGVAI-----NVMGCTCLIQCLGKARRIDDLVRVFGVSIDR----GVKPD-DRLCGCLLS 511 (710)
Q Consensus 442 ~~~~~g~~~~A~~~~~~m~~~~~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~ll~ 511 (710)
.|.. |++++|+..|++.++..... ...++..+...|.+.|++++|+..|++.+.. +..+. ...+..++.
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~ 203 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVL 203 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 8877 88888888888876531111 1457788888888999999999998888752 21111 125566667
Q ss_pred HHHhcCChHHHHHHHHHHHHhCCcH
Q 005178 512 VVSLCETSEDVGKVITCLQQANPKL 536 (710)
Q Consensus 512 ~~~~~g~~~~a~~~~~~~~~~~p~~ 536 (710)
++...|++++|...|++.. +.|+.
T Consensus 204 ~~~~~g~~~~A~~~~~~al-~~p~~ 227 (307)
T 2ifu_A 204 VQLHRADYVAAQKCVRESY-SIPGF 227 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHT-TSTTS
T ss_pred HHHHcCCHHHHHHHHHHHh-CCCCC
Confidence 7777899999999888888 77753
No 119
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.67 E-value=1.1e-07 Score=84.07 Aligned_cols=105 Identities=10% Similarity=-0.025 Sum_probs=82.9
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005178 431 PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510 (710)
Q Consensus 431 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 510 (710)
.+...+..+...|.+.|++++|...|+++.+.... +...|..+..+|.+.|++++|+..|++++..... +...|..+.
T Consensus 34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg 111 (151)
T 3gyz_A 34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHH
Confidence 34567778888888888888888888888875433 6778888888888888888888888888874332 456777888
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCcHH
Q 005178 511 SVVSLCETSEDVGKVITCLQQANPKLV 537 (710)
Q Consensus 511 ~~~~~~g~~~~a~~~~~~~~~~~p~~~ 537 (710)
.+|...|++++|...|+++.++.|+..
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 888888888888888888888888754
No 120
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.63 E-value=9.7e-06 Score=80.69 Aligned_cols=169 Identities=7% Similarity=-0.058 Sum_probs=122.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-cC----HHHHH
Q 005178 402 TLLNMCADIGLVEEAERLFEDMKLSDYCKPDN----YSYTAMLNIYGSGGNVDNAIELFEEMSELGVA-IN----VMGCT 472 (710)
Q Consensus 402 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~ 472 (710)
..+..+...|++++|..++++..+.....++. ..+..+...|...|++++|+..|+++.+.... .+ ..+|+
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34667888999999999999988754212232 13345777788888999999999999874222 22 34689
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH----C-CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhh
Q 005178 473 CLIQCLGKARRIDDLVRVFGVSID----R-GVKPDD-RLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDN 546 (710)
Q Consensus 473 ~li~~~~~~g~~~~A~~~~~~m~~----~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 546 (710)
.+...|...|++++|+..|+++++ . +..+.. .++..+..+|.+.|++++|.++++++.++.+.
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~----------- 228 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR----------- 228 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-----------
Confidence 999999999999999999999883 1 222222 37788999999999999999988876543221
Q ss_pred cCCcccHHHHHHHHHHhccCCCC-hhhHHHHHHHHHhCCC-HHHHHHHHHHHHH
Q 005178 547 STGFENIKEEFRNVIKDTEVDAR-RPFCNCLIDICRNRNL-NERAHELLYLGTL 598 (710)
Q Consensus 547 ~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~ 598 (710)
....+. ..+|..++.+|.+.|+ +++|.+.+++++.
T Consensus 229 -----------------~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 229 -----------------INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp -----------------TTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred -----------------cCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 111111 2378889999999995 6999999998853
No 121
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.63 E-value=1.3e-06 Score=82.21 Aligned_cols=132 Identities=8% Similarity=-0.091 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 005178 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL 478 (710)
Q Consensus 399 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 478 (710)
.+..+...+...|++++|.+.|++.. .++...|..+...|...|++++|...|++..+... .+...|..+..+|
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHH
Confidence 34455666777788888888877663 45777788888888888888888888888777542 2567777788888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCC--------------CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcH
Q 005178 479 GKARRIDDLVRVFGVSIDRGVK--------------PD-DRLCGCLLSVVSLCETSEDVGKVITCLQQANPKL 536 (710)
Q Consensus 479 ~~~g~~~~A~~~~~~m~~~~~~--------------p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 536 (710)
...|++++|+..|+++.+.... |+ ...+..+..+|...|++++|.+.|+++.+..|+.
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 8888888888888887764321 11 2567778888889999999999999988888865
No 122
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.62 E-value=1.6e-07 Score=82.87 Aligned_cols=115 Identities=8% Similarity=-0.025 Sum_probs=84.4
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005178 419 LFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRG 498 (710)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 498 (710)
.|+++.... +.+...+..+...+...|++++|...|+++...... +...|..+..+|...|++++|+..|++++...
T Consensus 9 ~~~~al~~~--p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 9 TIAMLNEIS--SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp SHHHHTTCC--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hHHHHHcCC--HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 344444433 345566777778888888888888888888775432 67778888888888888888888888887643
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHH
Q 005178 499 VKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLV 537 (710)
Q Consensus 499 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 537 (710)
.. +...+..+..+|...|++++|.+.|+++.++.|++.
T Consensus 86 p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 123 (148)
T 2vgx_A 86 IX-EPRFPFHAAECLLQXGELAEAESGLFLAQELIANXP 123 (148)
T ss_dssp TT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCG
T ss_pred CC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 22 455677788888888888888888888888776643
No 123
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.59 E-value=3e-07 Score=91.13 Aligned_cols=93 Identities=12% Similarity=-0.106 Sum_probs=41.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 005178 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYG 444 (710)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~ 444 (710)
+..+...+.+.|++++|+..|++..+.... +...|..+..+|.+.|++++|+..+++..+.. +.+...+..+..+|.
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 7 LKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 333444444444444444444444433211 34444444444444444444444444444433 334444444444444
Q ss_pred hCCCHHHHHHHHHHHH
Q 005178 445 SGGNVDNAIELFEEMS 460 (710)
Q Consensus 445 ~~g~~~~A~~~~~~m~ 460 (710)
..|++++|...|+++.
T Consensus 84 ~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 84 EMESYDEAIANLQRAY 99 (281)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 4444444444444443
No 124
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.58 E-value=1.1e-05 Score=80.22 Aligned_cols=164 Identities=13% Similarity=0.025 Sum_probs=118.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCC-CCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCC----HHHHHH
Q 005178 368 LIKIYGKARWAKDALELWERMRENKWP-MDF----ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPD----NYSYTA 438 (710)
Q Consensus 368 li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~ 438 (710)
.+..+...|++++|..++++..+.... ++. ..+..+...+...|++++|+..|++..+......+ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 356677888888888888888764321 121 12334666666778899999999988874321233 346888
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHH----c-CCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHH
Q 005178 439 MLNIYGSGGNVDNAIELFEEMSE----L-GVAIN-VMGCTCLIQCLGKARRIDDLVRVFGVSIDR----GVKPD-DRLCG 507 (710)
Q Consensus 439 li~~~~~~g~~~~A~~~~~~m~~----~-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~ 507 (710)
+...|...|++++|...|+++.+ . +..+. ..+|..+...|.+.|++++|+..+++.++. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 99999999999999999998874 1 11222 347888899999999999999999888742 22223 55788
Q ss_pred HHHHHHHhcCC-hHHHHHHHHHHHH
Q 005178 508 CLLSVVSLCET-SEDVGKVITCLQQ 531 (710)
Q Consensus 508 ~ll~~~~~~g~-~~~a~~~~~~~~~ 531 (710)
.+..+|.+.|+ +++|.+.++++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 88999999994 6999998888754
No 125
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.57 E-value=4.1e-06 Score=78.78 Aligned_cols=125 Identities=9% Similarity=-0.030 Sum_probs=72.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 005178 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410 (710)
Q Consensus 331 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 410 (710)
..+...+...|++++|...|++.. .|+...+..+...|.+.|++++|+..|++..+... .+...+..+..+|...
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHc
Confidence 334455555566666666555542 34555555566666666666666666666555432 2455556666666666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCC----------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 005178 411 GLVEEAERLFEDMKLSDYCKPD----------------NYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462 (710)
Q Consensus 411 g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 462 (710)
|++++|++.|++..+.. +.+ ...+..+..+|...|++++|...|+++.+.
T Consensus 85 ~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQL--RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TCHHHHHHHHHHHHHTT--TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhC--CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 66666666666665543 122 256666666777777777777777776664
No 126
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.56 E-value=2.5e-06 Score=82.57 Aligned_cols=142 Identities=10% Similarity=0.038 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcC--HHHHHHHHH
Q 005178 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN--VMGCTCLIQ 476 (710)
Q Consensus 399 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~ 476 (710)
....+...+...|++++|.++|+.+...+ |+......+...|.+.|++++|+..|+...... .|. ...+..+..
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~~---p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~ 179 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVAG---SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGV 179 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCTT---CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHH
Confidence 34456667788888999988888887644 443366667778888999999999988655421 111 236777888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHh
Q 005178 477 CLGKARRIDDLVRVFGVSIDRGVKPD--DRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIED 545 (710)
Q Consensus 477 ~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~ 545 (710)
++.+.|++++|+..|++.......|. .........++.+.|+.++|..+|+++...+|+ ..+...|..
T Consensus 180 al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 180 AAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 89999999999999998875333254 235666777888999999999999999999998 666666654
No 127
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.55 E-value=3.8e-05 Score=76.55 Aligned_cols=181 Identities=8% Similarity=-0.079 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC-HHHHHH
Q 005178 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG--NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR-IDDLVR 489 (710)
Q Consensus 413 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~ 489 (710)
+++++.+++.+.... +.+..+|+.-...+...| .+++++.+++.+.+...+ |..+|+.-...+...|. ++++++
T Consensus 90 l~~EL~~~~~~L~~~--PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~ 166 (331)
T 3dss_A 90 VKAELGFLESCLRVN--PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELA 166 (331)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHH
Confidence 567777777777765 567777777777777766 377888888888776554 77777777777777777 578888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhc--------------CChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCc-c---
Q 005178 490 VFGVSIDRGVKPDDRLCGCLLSVVSLC--------------ETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGF-E--- 551 (710)
Q Consensus 490 ~~~~m~~~~~~p~~~~~~~ll~~~~~~--------------g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~-~--- 551 (710)
.++++++..+. |...|+....++.+. +.++++.+++..+...+|++..++..+....... |
T Consensus 167 ~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 167 FTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccc
Confidence 88888776544 566666665555544 4577888889999999999988776443222111 1
Q ss_pred ------cHHHHHHHHHHh-ccCCCChhhHHHHHHHH-----HhCCCHHHHHHHHHHHHH
Q 005178 552 ------NIKEEFRNVIKD-TEVDARRPFCNCLIDIC-----RNRNLNERAHELLYLGTL 598 (710)
Q Consensus 552 ------~~~~~a~~~~~~-~~~~~~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~~~ 598 (710)
+.++++.+.+++ +..+|+. .|..+.-++ ...|..++....+++..+
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 355666666655 4667776 454332222 246777788888887653
No 128
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.54 E-value=3.4e-05 Score=77.28 Aligned_cols=124 Identities=12% Similarity=-0.015 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCH---
Q 005178 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN-------VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI--- 484 (710)
Q Consensus 415 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~--- 484 (710)
++++.++++.+.. +.|...|+.....+.+.++ ++++++.+++++..... |...|+-+-..+.+.|+.
T Consensus 185 eELe~~~k~I~~d--p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~ 261 (349)
T 3q7a_A 185 SELDWCNEMLRVD--GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVP 261 (349)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGG
T ss_pred HHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCccc
Confidence 5666666666655 4566666666666655554 56666666666654433 555665555555554443
Q ss_pred -----------------HHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-HhCCcHHHHHH
Q 005178 485 -----------------DDLVRVFGVSIDRG-----VKPDDRLCGCLLSVVSLCETSEDVGKVITCLQ-QANPKLVAFLN 541 (710)
Q Consensus 485 -----------------~~A~~~~~~m~~~~-----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~~~p~~~~~~~ 541 (710)
.....+..++...+ -.+....+..|+..|...|+.++|.++++.+. +.+|--...++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~ 341 (349)
T 3q7a_A 262 ILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWE 341 (349)
T ss_dssp GHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred ccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHH
Confidence 11222222222111 02345556666677777777777777777664 45665444443
No 129
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.54 E-value=1e-06 Score=80.25 Aligned_cols=126 Identities=9% Similarity=0.004 Sum_probs=87.3
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHH-HHhcCCH--H
Q 005178 409 DIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC-LGKARRI--D 485 (710)
Q Consensus 409 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~--~ 485 (710)
..|++++|...+++..+.. +.+...|..+...|...|++++|...|+++.+.... +...+..+..+ |...|++ +
T Consensus 22 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp -----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCH
T ss_pred hccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchH
Confidence 4567777777777776655 566777777777888888888888888877764332 56667777777 6677777 8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHH
Q 005178 486 DLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVA 538 (710)
Q Consensus 486 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 538 (710)
+|+..|+++++.... +...+..+..+|...|++++|...|+++.+..|++..
T Consensus 99 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 99 QTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 888888877764322 4556777777788888888888888888887776543
No 130
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.54 E-value=1.9e-05 Score=78.63 Aligned_cols=129 Identities=8% Similarity=-0.039 Sum_probs=56.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CC--HHH
Q 005178 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDE------KTLTALIKIYGKARWAKDALELWERMRENKWP---MD--FIL 399 (710)
Q Consensus 331 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~~--~~~ 399 (710)
...+..+...|++++|.+.+.+..+.... .. ..+..+...+...|++++|+..+++..+.... +. ..+
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 33445555666666666666555543211 11 11222333344445555555555554432111 11 224
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh---CCCCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005178 400 YNTLLNMCADIGLVEEAERLFEDMKL---SDYCKP--DNYSYTAMLNIYGSGGNVDNAIELFEEMS 460 (710)
Q Consensus 400 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 460 (710)
++.+...|...|++++|...|++..+ .....+ ...++..+...|...|++++|...+++..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal 223 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 44455555555555555555554431 110000 01344444455555555555555554443
No 131
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.53 E-value=1.9e-06 Score=72.71 Aligned_cols=111 Identities=14% Similarity=0.090 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005178 433 NYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSV 512 (710)
Q Consensus 433 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 512 (710)
...|..+...|...|++++|..+++++.+... .+...+..+...+.+.|++++|+.+|+++.+... .+..++..+..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHH
Confidence 45666677777777777777777777766432 2566677777777777777777777777765432 245567777777
Q ss_pred HHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHh
Q 005178 513 VSLCETSEDVGKVITCLQQANPKLVAFLNLIED 545 (710)
Q Consensus 513 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~ 545 (710)
|...|++++|...++++.+..|+...+...++.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 119 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 119 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 777888888888888877777777666655554
No 132
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.51 E-value=4.7e-06 Score=74.58 Aligned_cols=93 Identities=12% Similarity=-0.001 Sum_probs=40.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Q 005178 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK 480 (710)
Q Consensus 401 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 480 (710)
..+...+...|++++|...|++..+.. +.+...+..+..+|...|++++|...+++..+... .+...|..+..++.+
T Consensus 17 ~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 17 KTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHH
Confidence 333344444444444444444444333 23344444444444444444444444444444321 133444444444444
Q ss_pred cCCHHHHHHHHHHHHH
Q 005178 481 ARRIDDLVRVFGVSID 496 (710)
Q Consensus 481 ~g~~~~A~~~~~~m~~ 496 (710)
.|++++|+..|+++.+
T Consensus 94 ~~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 94 LGKFRAALRDYETVVK 109 (166)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHH
Confidence 4444444444444443
No 133
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.51 E-value=4.3e-06 Score=74.83 Aligned_cols=128 Identities=13% Similarity=-0.027 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 005178 363 KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNI 442 (710)
Q Consensus 363 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~ 442 (710)
..+..+...+...|++++|...|++..+.... +...+..+...+...|++++|.+.+++..+.. +.+...|..+..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHH
Confidence 34555566666667777777777766654322 55666666666667777777777777666654 4556666666667
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCcCHHHHH--HHHHHHHhcCCHHHHHHHHHHH
Q 005178 443 YGSGGNVDNAIELFEEMSELGVAINVMGCT--CLIQCLGKARRIDDLVRVFGVS 494 (710)
Q Consensus 443 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~m 494 (710)
|...|++++|...|+++.+.... +...+. .++..+.+.|++++|+..++..
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 77777777777777766654322 333332 2222244555555555555543
No 134
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.51 E-value=3.5e-06 Score=71.79 Aligned_cols=97 Identities=13% Similarity=0.072 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 005178 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477 (710)
Q Consensus 398 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 477 (710)
..+......|.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|+..|++.++.+.. +...|..+..+
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~ 90 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHH
Confidence 345556666777777777777777776665 566777777777777777777777777777765432 56677777777
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 005178 478 LGKARRIDDLVRVFGVSIDR 497 (710)
Q Consensus 478 ~~~~g~~~~A~~~~~~m~~~ 497 (710)
|...|++++|++.|++.++.
T Consensus 91 ~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 77777777777777777763
No 135
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.51 E-value=2.2e-06 Score=72.97 Aligned_cols=111 Identities=10% Similarity=0.014 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005178 433 NYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSV 512 (710)
Q Consensus 433 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 512 (710)
...|..+...+.+.|++++|+..|++.++.... +...|..+..+|.+.|++++|+..|++.++.... +...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHH
Confidence 345666777778888888888888887775432 5677788888888888888888888888764322 45677778888
Q ss_pred HHhcCChHHHHHHHHHHHHhC------CcHHHHHHHHHh
Q 005178 513 VSLCETSEDVGKVITCLQQAN------PKLVAFLNLIED 545 (710)
Q Consensus 513 ~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~L~~ 545 (710)
+...|++++|...|+++.+++ |++..+...+..
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~ 120 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 120 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHH
Confidence 888888888888888888887 777666665554
No 136
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.50 E-value=9.3e-07 Score=87.52 Aligned_cols=189 Identities=11% Similarity=-0.051 Sum_probs=126.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 005178 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLI 475 (710)
Q Consensus 396 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 475 (710)
+...+..+...+...|++++|+..|++..+.. +.+...|..+..+|...|++++|...++++++.... +...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 55677788888999999999999999998876 568889999999999999999999999999885432 677888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcc
Q 005178 476 QCLGKARRIDDLVRVFGVSIDRGV----KPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFE 551 (710)
Q Consensus 476 ~~~~~~g~~~~A~~~~~~m~~~~~----~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~ 551 (710)
.+|...|++++|+..|++..+.+. ......+..+ .. .++...........|....+...++... .|
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--~~------~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~ 149 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL--RI------AKKKRWNSIEERRIHQESELHSYLTRLI--AA 149 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH--HH------HHHHHHHHHHHTCCCCCCHHHHHHHHHH--HH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH--HH------HHHHHHHHHHHHHHhhhHHHHHHHHHHH--HH
Confidence 999999999999999998875321 1111122211 11 1222222222334455555555555432 14
Q ss_pred cHHHHHHHHH-HhccCCCChh-hHHHHHHHHHhC-CCHHHHHHHHHHHHH
Q 005178 552 NIKEEFRNVI-KDTEVDARRP-FCNCLIDICRNR-NLNERAHELLYLGTL 598 (710)
Q Consensus 552 ~~~~~a~~~~-~~~~~~~~~~-~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 598 (710)
..++|.+.+ +.+...|+.. ....+...+.+. +.+++|.++|.++.+
T Consensus 150 -~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 150 -ERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp -HHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred -HHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 344444443 4456666654 344555556655 668889999987654
No 137
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.49 E-value=0.0001 Score=73.52 Aligned_cols=189 Identities=11% Similarity=0.060 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHH
Q 005178 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKAR--WAKDALELWERMRENKWPMDFILYNTLLNMCADIGL-VEEAERLF 420 (710)
Q Consensus 344 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~ 420 (710)
++++.+++.+.... +.+..+|+.-.-.+.+.+ .+++++.+++.+.+.... |...|+.-.-.+...|. ++++++.+
T Consensus 91 ~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 91 KAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 34444444444332 223334433333333333 244445555544444322 44444444444444444 34555555
Q ss_pred HHHHhCCCCCCCHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc-----
Q 005178 421 EDMKLSDYCKPDNYSYTAMLNIYGSG--------------GNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA----- 481 (710)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~----- 481 (710)
+.+.+.. +.|...|+.....+... +.++++++.+.+.+...+. |...|+-+-..+.+.
T Consensus 169 ~~~I~~~--p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLITRN--FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHC--SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHC--CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccc
Confidence 5555444 34444444444333332 2345555555555554322 444554333333333
Q ss_pred ------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-----HHHhcCChHHHHHHHHHHHHhCCcHHHHH
Q 005178 482 ------RRIDDLVRVFGVSIDRGVKPDDRLCGCLLS-----VVSLCETSEDVGKVITCLQQANPKLVAFL 540 (710)
Q Consensus 482 ------g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~-----~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 540 (710)
+.++++++.++++++ +.||.. |..+.. +....|..+++...+.++.+++|.-...+
T Consensus 246 ~~~~~~~~l~~el~~~~elle--~~pd~~-w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y 312 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQE--LEPENK-WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 312 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH--HCTTCH-HHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHh--hCcccc-hHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHH
Confidence 345667777777665 334432 221111 11234556667777777777777655443
No 138
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.48 E-value=1.3e-06 Score=81.40 Aligned_cols=157 Identities=11% Similarity=-0.068 Sum_probs=91.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCCCHHHHHHHHHHHHhCCCH
Q 005178 374 KARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS----DYCKPDNYSYTAMLNIYGSGGNV 449 (710)
Q Consensus 374 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~li~~~~~~g~~ 449 (710)
..|++++|.++++.+... .......+..+...|...|++++|...+++.... +..+....++..+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 345566666644333321 1123455566666666666666666666665441 11012345566677777777777
Q ss_pred HHHHHHHHHHHHc----CCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C-CCC--HHHHHHHHHHHHhcCC
Q 005178 450 DNAIELFEEMSEL----GVAI--NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRG--V-KPD--DRLCGCLLSVVSLCET 518 (710)
Q Consensus 450 ~~A~~~~~~m~~~----~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~-~p~--~~~~~~ll~~~~~~g~ 518 (710)
++|...+++..+. +-.+ ....+..+...+...|++++|+..+++..+.. . .+. ..++..+..++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 7777777776552 1111 23456667777777888888888877766321 1 111 1245667778888888
Q ss_pred hHHHHHHHHHHHH
Q 005178 519 SEDVGKVITCLQQ 531 (710)
Q Consensus 519 ~~~a~~~~~~~~~ 531 (710)
+++|.+.++++.+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888877654
No 139
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.48 E-value=9.8e-06 Score=80.67 Aligned_cols=168 Identities=12% Similarity=-0.027 Sum_probs=125.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CCC--HH
Q 005178 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDF-----ILYNTLLNMCADIGLVEEAERLFEDMKLSDYC--KPD--NY 434 (710)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~--~~ 434 (710)
.+...+..+...|++++|.+.+.+..+....... ..+..+...+...|++++|+..+++..+.... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4455677888999999999999988875433211 22344566677889999999999998754310 122 45
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH---cC-CCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC-H
Q 005178 435 SYTAMLNIYGSGGNVDNAIELFEEMSE---LG-VAI--NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRG----VKPD-D 503 (710)
Q Consensus 435 ~~~~li~~~~~~g~~~~A~~~~~~m~~---~~-~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~p~-~ 503 (710)
+|+.+...|...|++++|...|+++.+ .. ..+ ...+|..+...|.+.|++++|+..+++.++.. .... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 889999999999999999999999873 21 111 12588899999999999999999999887431 1111 5
Q ss_pred HHHHHHHHHHHhcCChHHH-HHHHHHHHH
Q 005178 504 RLCGCLLSVVSLCETSEDV-GKVITCLQQ 531 (710)
Q Consensus 504 ~~~~~ll~~~~~~g~~~~a-~~~~~~~~~ 531 (710)
.+|..+..+|...|++++| ...++++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788899999999999999 777877654
No 140
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.47 E-value=1.7e-06 Score=74.13 Aligned_cols=115 Identities=7% Similarity=-0.101 Sum_probs=82.8
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005178 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCL 509 (710)
Q Consensus 430 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 509 (710)
+.+...|..+...|...|++++|...|+++.+.... +...+..+..+|...|++++|+..|+++.+... .+...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHH
Confidence 345567777777777888888888888877764322 567777777777788888888888887776432 245677777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhh
Q 005178 510 LSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDN 546 (710)
Q Consensus 510 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 546 (710)
..+|...|++++|.+.|+++.+.+|++..+...++.+
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 127 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRC 127 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 7788888888888888888888887776665555543
No 141
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.47 E-value=6.9e-06 Score=69.13 Aligned_cols=98 Identities=19% Similarity=0.190 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 005178 397 FILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476 (710)
Q Consensus 397 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 476 (710)
...+..+...+...|++++|.++|+++.+.. +.+..++..+...|...|++++|..+++++.+... .+...+..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHH
Confidence 3455555666666666666666666665544 34556666666666666666666666666665432 24556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 005178 477 CLGKARRIDDLVRVFGVSIDR 497 (710)
Q Consensus 477 ~~~~~g~~~~A~~~~~~m~~~ 497 (710)
.|...|++++|...|+++.+.
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHh
Confidence 666666666666666666653
No 142
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.44 E-value=1.2e-05 Score=77.85 Aligned_cols=197 Identities=7% Similarity=-0.098 Sum_probs=139.6
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHCCCCCC---------------
Q 005178 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTL-------LEAMGKAGKPGLARSLFDEMVESGLTPD--------------- 361 (710)
Q Consensus 304 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~--------------- 361 (710)
..++.+.|.+.|.++.+.. +-....|..+ ...+...++..+++..++.-.+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 5788888888888888753 2355677777 4666666666666666555544 1221
Q ss_pred -------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCC--
Q 005178 362 -------EKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPD-- 432 (710)
Q Consensus 362 -------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-- 432 (710)
......+...+...|++++|.++|..+...+ |+......+...+.+.+++++|+..|+...... .|.
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~--d~~~~ 170 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP--DKFLA 170 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS--CHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC--CcccH
Confidence 1233456677888999999999998887654 443366666778889999999999998665421 111
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005178 433 NYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN--VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCL 509 (710)
Q Consensus 433 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 509 (710)
...+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++... .|+...+..|
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~~~aL 247 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHHHH
Confidence 34678889999999999999999999885443253 346777788899999999999999999874 4554344333
No 143
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.44 E-value=2.9e-06 Score=74.79 Aligned_cols=103 Identities=17% Similarity=0.144 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 005178 397 FILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476 (710)
Q Consensus 397 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 476 (710)
...+..+...+.+.|++++|+..|++..... +.+...|..+..+|...|++++|+..|+++.+.... +...|..+..
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~ 112 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHH
Confidence 4456667777778888888888888887766 567778888888888888888888888888775433 5677777888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 005178 477 CLGKARRIDDLVRVFGVSIDRGVKPDDR 504 (710)
Q Consensus 477 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 504 (710)
+|.+.|++++|+..|++.++. .|+..
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 888888888888888888763 35543
No 144
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.42 E-value=9.6e-07 Score=77.24 Aligned_cols=105 Identities=10% Similarity=-0.021 Sum_probs=75.7
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005178 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511 (710)
Q Consensus 432 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 511 (710)
+...+..+...+...|++++|...|+++...+.. +...|..+..+|.+.|++++|+..|++.+..... +...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHH
Confidence 4455666777777788888888888887775432 6677777777888888888888888887764322 4456667777
Q ss_pred HHHhcCChHHHHHHHHHHHHhCCcHHH
Q 005178 512 VVSLCETSEDVGKVITCLQQANPKLVA 538 (710)
Q Consensus 512 ~~~~~g~~~~a~~~~~~~~~~~p~~~~ 538 (710)
+|...|++++|.+.|+.+.++.|++..
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~p~~~~ 121 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARALAAAQPA 121 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTCGG
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCcc
Confidence 888888888888888888777665543
No 145
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.41 E-value=3.3e-06 Score=85.97 Aligned_cols=115 Identities=9% Similarity=-0.017 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005178 433 NYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN--------------VMGCTCLIQCLGKARRIDDLVRVFGVSIDRG 498 (710)
Q Consensus 433 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 498 (710)
...|..+...|.+.|++++|+..|++.++...... ...|..+..+|.+.|++++|+..|+++++..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34455555555555555555555555555332211 4667777777777777777777777777643
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcC
Q 005178 499 VKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNST 548 (710)
Q Consensus 499 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~ 548 (710)
.. +...|..+..+|...|++++|...|+++.+++|++..+...|+.++.
T Consensus 227 p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 227 SN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred CC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 22 45677777777778888888888888777777776655555554433
No 146
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.40 E-value=8.2e-06 Score=69.33 Aligned_cols=30 Identities=10% Similarity=-0.001 Sum_probs=11.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCcH
Q 005178 507 GCLLSVVSLCETSEDVGKVITCLQQANPKL 536 (710)
Q Consensus 507 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 536 (710)
..+..+|...|++++|.+.++++.+..|++
T Consensus 84 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 113 (131)
T 2vyi_A 84 GRMGLALSSLNKHVEAVAYYKKALELDPDN 113 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCccc
Confidence 333333333444444444444433333333
No 147
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.40 E-value=7.8e-06 Score=68.04 Aligned_cols=111 Identities=11% Similarity=-0.013 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005178 433 NYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSV 512 (710)
Q Consensus 433 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 512 (710)
...+..+...+...|++++|...|++..+... .+...+..+..+|...|++++|+..+++..+.... +...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 44566666777777777777777777766432 25666777777777777777777777777654322 45566777777
Q ss_pred HHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHh
Q 005178 513 VSLCETSEDVGKVITCLQQANPKLVAFLNLIED 545 (710)
Q Consensus 513 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~ 545 (710)
+...|++++|.+.++++.+.+|++..+...++.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 114 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQN 114 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 777888888888888777777777666555543
No 148
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.40 E-value=9.6e-06 Score=68.90 Aligned_cols=90 Identities=11% Similarity=0.045 Sum_probs=34.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC
Q 005178 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKAR 482 (710)
Q Consensus 403 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 482 (710)
+...+...|++++|...|++..... +.+...+..+...|...|++++|...+++..+... .+...+..+..+|.+.|
T Consensus 18 ~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 94 (131)
T 2vyi_A 18 EGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGLALSSLN 94 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHHHHHHhC
Confidence 3333333444444444444333332 22333344444444444444444444444333211 12333334444444444
Q ss_pred CHHHHHHHHHHHH
Q 005178 483 RIDDLVRVFGVSI 495 (710)
Q Consensus 483 ~~~~A~~~~~~m~ 495 (710)
++++|+..|++..
T Consensus 95 ~~~~A~~~~~~~~ 107 (131)
T 2vyi_A 95 KHVEAVAYYKKAL 107 (131)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 4444444444443
No 149
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.39 E-value=6.1e-06 Score=70.56 Aligned_cols=98 Identities=16% Similarity=0.149 Sum_probs=60.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 005178 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLI 475 (710)
Q Consensus 396 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 475 (710)
+...+..+...+...|++++|...|++..+.. +.+...+..+..+|...|++++|...++++.+.... +...+..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la 91 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN--PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKA 91 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHH
Confidence 34455556666666666666666666666544 345666666666666666666666666666654322 455666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 005178 476 QCLGKARRIDDLVRVFGVSID 496 (710)
Q Consensus 476 ~~~~~~g~~~~A~~~~~~m~~ 496 (710)
.+|.+.|++++|+..|++..+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 666666666666666666654
No 150
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.38 E-value=5.2e-07 Score=84.12 Aligned_cols=140 Identities=9% Similarity=0.037 Sum_probs=91.5
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcC---------------HHH
Q 005178 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN---------------VMG 470 (710)
Q Consensus 406 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---------------~~~ 470 (710)
.....|+++.+.+.++...... ......+..+...+...|++++|...|++.++...... ...
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEK--VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC 90 (198)
T ss_dssp ---------CCCSGGGCCHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHH
T ss_pred hhhhhhhccccCchhhCCHHHH--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence 3344455555555554333221 12344566666777777777777777777766322211 267
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcC
Q 005178 471 CTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNST 548 (710)
Q Consensus 471 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~ 548 (710)
|..+..+|.+.|++++|+..+++.++... .+...+..+..+|...|++++|.+.|+++.+++|++..+...++.++.
T Consensus 91 ~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 91 NLNLATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 78888888889999999999988887532 256678888888889999999999999998888888777776665433
No 151
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.38 E-value=1.1e-05 Score=70.55 Aligned_cols=114 Identities=11% Similarity=-0.011 Sum_probs=91.6
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 005178 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN----VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRL 505 (710)
Q Consensus 430 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 505 (710)
+.+...+..+...+...|++++|...|++..+. .|+ ...|..+..+|.+.|++++|+..+++.++.... +...
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~ 101 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKA 101 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHH
Confidence 346777888888888888999998888888874 355 677888888889999999999999888864322 5667
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhh
Q 005178 506 CGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDN 546 (710)
Q Consensus 506 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 546 (710)
+..+..+|...|++++|.+.|+++.+.+|++..+...+...
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 78888889999999999999999999999887777666554
No 152
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.37 E-value=3.7e-06 Score=76.49 Aligned_cols=120 Identities=7% Similarity=-0.004 Sum_probs=83.8
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH-HHhCCCH--H
Q 005178 374 KARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNI-YGSGGNV--D 450 (710)
Q Consensus 374 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~--~ 450 (710)
..|++++|+..++...+... .+...+..+...|...|++++|...|++..+.. +.+...+..+..+ |...|++ +
T Consensus 22 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp -----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcchH
Confidence 45667777777777666533 256677777777777788888888887777665 4567777777777 6677887 8
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005178 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDR 497 (710)
Q Consensus 451 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 497 (710)
+|...|+++.+.... +...+..+...|...|++++|+..|+++++.
T Consensus 99 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 888888887775432 4667777777888888888888888887764
No 153
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.37 E-value=4.3e-06 Score=77.80 Aligned_cols=132 Identities=12% Similarity=0.022 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC--CH
Q 005178 329 VYNTLLEAMGKAGKPGLARSLFDEMVES----GLTP-DEKTLTALIKIYGKARWAKDALELWERMREN----KWPM--DF 397 (710)
Q Consensus 329 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~--~~ 397 (710)
++..+...+...|++++|...|++..+. +..+ ....+..+...|...|++++|...+++..+. +-.+ ..
T Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 107 (203)
T 3gw4_A 28 ARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAAS 107 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHH
Confidence 4444444455555555555555444331 1011 1223444444444555555555544443321 1000 12
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005178 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPD----NYSYTAMLNIYGSGGNVDNAIELFEEMS 460 (710)
Q Consensus 398 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~ 460 (710)
..+..+...+...|++++|...+++..+......+ ..++..+...|...|++++|...+++..
T Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 108 ANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 23444444455555555555555444321000011 1223444444455555555555544443
No 154
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.35 E-value=1.2e-05 Score=81.79 Aligned_cols=146 Identities=13% Similarity=-0.001 Sum_probs=84.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005178 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405 (710)
Q Consensus 326 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 405 (710)
+...+..+...|.+.|++++|+..|++.++.. |+...+ ..+.+..+- .. ....|..+..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~~~----~~----~~~~~~nla~ 204 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF-----------SNEEAQKAQ----AL----RLASHLNLAM 204 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC-----------CSHHHHHHH----HH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC-----------ChHHHHHHH----HH----HHHHHHHHHH
Confidence 35567777777777778888877777776642 211000 001111100 00 1345666666
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHH
Q 005178 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485 (710)
Q Consensus 406 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 485 (710)
+|.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|+..|+++++.... +...+..+..++.+.|+.+
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~ 281 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELD--SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQL 281 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHH
Confidence 6666777777777777666655 456666666777777777777777777766664322 4556666666666666666
Q ss_pred HH-HHHHHHHH
Q 005178 486 DL-VRVFGVSI 495 (710)
Q Consensus 486 ~A-~~~~~~m~ 495 (710)
+| ...|+.|.
T Consensus 282 ~a~~~~~~~~~ 292 (336)
T 1p5q_A 282 AREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66 33444443
No 155
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.34 E-value=2.5e-06 Score=75.14 Aligned_cols=98 Identities=13% Similarity=0.087 Sum_probs=76.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 005178 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLI 475 (710)
Q Consensus 396 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 475 (710)
+...+..+...+...|++++|+..|+...... +.+...|..+..+|...|++++|+..|+++.+.... +...|..+.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg 96 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAA 96 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHH
Confidence 34456667777888888888888888887766 567788888888888888888888888888775432 567777788
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 005178 476 QCLGKARRIDDLVRVFGVSID 496 (710)
Q Consensus 476 ~~~~~~g~~~~A~~~~~~m~~ 496 (710)
.+|...|++++|+..|++.++
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 888888888888888888775
No 156
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.33 E-value=9.6e-06 Score=69.95 Aligned_cols=104 Identities=9% Similarity=-0.052 Sum_probs=73.5
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005178 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCL 509 (710)
Q Consensus 430 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 509 (710)
+.+...|..+...+...|++++|...|++.++.... +...|..+..+|...|++++|+..|++.+..... +...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHH
Confidence 345667777777777777777777777777665432 5667777777777777777777777777764322 45567777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCc
Q 005178 510 LSVVSLCETSEDVGKVITCLQQANPK 535 (710)
Q Consensus 510 l~~~~~~g~~~~a~~~~~~~~~~~p~ 535 (710)
..+|...|++++|...|+++.+..|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 77777788888888877777776665
No 157
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.30 E-value=1.1e-05 Score=68.86 Aligned_cols=101 Identities=8% Similarity=-0.007 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCC----HHHHHH
Q 005178 435 SYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRG--VKPD----DRLCGC 508 (710)
Q Consensus 435 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~----~~~~~~ 508 (710)
++..+...|.+.|++++|+..|++.++.... +...|..+..+|.+.|++++|+..|++.++.. ..++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 3444555555555555555555555553321 34455555555555555555555555554321 1111 124455
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCcH
Q 005178 509 LLSVVSLCETSEDVGKVITCLQQANPKL 536 (710)
Q Consensus 509 ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 536 (710)
+..++...|++++|++.|++.....|+.
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~~~~ 116 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEFRDP 116 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcCH
Confidence 5556666666666666666666655543
No 158
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.30 E-value=6.4e-06 Score=73.90 Aligned_cols=106 Identities=9% Similarity=-0.047 Sum_probs=81.0
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005178 431 PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510 (710)
Q Consensus 431 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 510 (710)
.+...|..+...|...|++++|+..|++.++.... +...|..+..+|.+.|++++|+..|++.++.... +...|..+.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 34566777777888888888888888888775432 6777888888888888888888888888764322 466777888
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCcHHH
Q 005178 511 SVVSLCETSEDVGKVITCLQQANPKLVA 538 (710)
Q Consensus 511 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 538 (710)
.+|...|++++|.+.|+++.+++|++..
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence 8888888888888888888888877655
No 159
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.30 E-value=1.4e-05 Score=68.18 Aligned_cols=106 Identities=16% Similarity=0.123 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC--cC----HHHH
Q 005178 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA--IN----VMGC 471 (710)
Q Consensus 398 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~----~~~~ 471 (710)
..+..+...+.+.|++++|++.|++..+.. +.+...|..+..+|...|++++|+..+++.++.... .+ ..+|
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~--p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD--PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 456667777888888888888888887765 567788888888888888888888888887763211 11 2467
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 005178 472 TCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCG 507 (710)
Q Consensus 472 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 507 (710)
..+..++...|++++|++.|++.+. ..||..+..
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~ 120 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVK 120 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHH
Confidence 7778888888899999988888876 345655433
No 160
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.28 E-value=2.2e-05 Score=66.62 Aligned_cols=96 Identities=8% Similarity=-0.086 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 005178 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477 (710)
Q Consensus 398 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 477 (710)
..+..+...+.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|+..|++.++.... +...|..+..+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 81 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHH
Confidence 445566667777777777777777777665 566777777777777777777777777777775432 46677777777
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 005178 478 LGKARRIDDLVRVFGVSID 496 (710)
Q Consensus 478 ~~~~g~~~~A~~~~~~m~~ 496 (710)
|...|++++|+..|++.++
T Consensus 82 ~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 82 QIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHH
Confidence 7778888888877777765
No 161
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.26 E-value=0.00043 Score=72.80 Aligned_cols=167 Identities=11% Similarity=0.001 Sum_probs=89.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCC-HHH
Q 005178 295 FSVLGKMFGESGDYDGIRYVLQEMKSL-GVQPNL----VVYNTLLEAMGKAGKPGLARSLFDEMVE----SGLTPD-EKT 364 (710)
Q Consensus 295 ~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~ 364 (710)
+..++..|...|++++|.+.+..+... +..++. .+.+.+...+...|++++|..++.+... .+..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 344555555555555555555544331 000111 1122222233334566666666655542 122222 335
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC--CC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCC-C--HH
Q 005178 365 LTALIKIYGKARWAKDALELWERMREN--KW--PM-DFILYNTLLNMCADIGLVEEAERLFEDMKLSD--YCKP-D--NY 434 (710)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~~~~~m~~~--~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~-~--~~ 434 (710)
+..+...|...|++++|..+++++... +. .+ ...++..++..|...|++++|..++++..... ...| . ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 556666777777777777776665431 11 11 23456677777777888888877777654421 1011 1 24
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 005178 435 SYTAMLNIYGSGGNVDNAIELFEEMSE 461 (710)
Q Consensus 435 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (710)
.+..++..+...|++++|...|.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 556666777778888888877777654
No 162
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.25 E-value=7.7e-06 Score=69.11 Aligned_cols=98 Identities=9% Similarity=-0.067 Sum_probs=52.6
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005178 437 TAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLC 516 (710)
Q Consensus 437 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 516 (710)
..+...+.+.|++++|...|+++++.... +...|..+..++...|++++|+..|++.++.... +...+..+..+|...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 34445555566666666666666553322 4555555666666666666666666666553221 344555556666666
Q ss_pred CChHHHHHHHHHHHHhCCcH
Q 005178 517 ETSEDVGKVITCLQQANPKL 536 (710)
Q Consensus 517 g~~~~a~~~~~~~~~~~p~~ 536 (710)
|++++|...++++.+.+|++
T Consensus 99 g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHC-----
T ss_pred CCHHHHHHHHHHHHHhCcCC
Confidence 66666666666666655544
No 163
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.23 E-value=5.1e-05 Score=62.90 Aligned_cols=98 Identities=14% Similarity=0.138 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 005178 397 FILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476 (710)
Q Consensus 397 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 476 (710)
...+..+...+...|++++|...|++..... +.+...+..+...|...|++++|...+++..+.... +...+..+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~ 80 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHH
Confidence 3455566666677777777777777776654 456667777777777777777777777777664322 4666777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 005178 477 CLGKARRIDDLVRVFGVSIDR 497 (710)
Q Consensus 477 ~~~~~g~~~~A~~~~~~m~~~ 497 (710)
+|...|++++|...|++..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhhHHHHHHHHHHHHHc
Confidence 777777777777777777654
No 164
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.22 E-value=3.8e-06 Score=75.24 Aligned_cols=111 Identities=8% Similarity=0.000 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHc--------CC--------Cc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005178 434 YSYTAMLNIYGSGGNVDNAIELFEEMSEL--------GV--------AI-NVMGCTCLIQCLGKARRIDDLVRVFGVSID 496 (710)
Q Consensus 434 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------~~--------~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 496 (710)
..+......+.+.|++++|+..|.+.++. .. .| +...|..+..+|.+.|++++|+..+++.+.
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 44555666666777777777777666553 00 11 346788899999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHH-HHHHHHHh
Q 005178 497 RGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLV-AFLNLIED 545 (710)
Q Consensus 497 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~L~~ 545 (710)
.... +...|..+..+|...|++++|...|+++.+++|++. .+...|..
T Consensus 92 ~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~ 140 (162)
T 3rkv_A 92 REET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKI 140 (162)
T ss_dssp HSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred cCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 5422 566888999999999999999999999999999988 55555554
No 165
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.19 E-value=7.1e-05 Score=81.48 Aligned_cols=168 Identities=10% Similarity=-0.052 Sum_probs=124.9
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhC
Q 005178 377 WAKDALELWERMRENKWPMDFILYNTLLNMCADIGL----------VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446 (710)
Q Consensus 377 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 446 (710)
..++|++.++++.+.+.. +..+|+.--.++...|+ ++++.+.++.+.+.. +.+..+|+.-...+.+.
T Consensus 44 ~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 44 LDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHc
Confidence 345677777777776444 55666665555656666 888888888888876 67788888888888888
Q ss_pred C--CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-------
Q 005178 447 G--NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKAR-RIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLC------- 516 (710)
Q Consensus 447 g--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~------- 516 (710)
| ++++++..++++.+.+.+ |..+|+.-...+.+.| .++++++.++++++..+. |...|+....++.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccc
Confidence 8 668888888888887655 7888888877788888 788888888888776544 666777766666552
Q ss_pred -------CChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCC
Q 005178 517 -------ETSEDVGKVITCLQQANPKLVAFLNLIEDNSTG 549 (710)
Q Consensus 517 -------g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~ 549 (710)
+.++++.+++.++...+|++..++..++..+..
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~ 238 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGR 238 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhc
Confidence 456788888888888888888877777665443
No 166
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.18 E-value=1.5e-05 Score=65.64 Aligned_cols=103 Identities=12% Similarity=0.066 Sum_probs=70.0
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHH
Q 005178 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK-PDDRLCGCLL 510 (710)
Q Consensus 432 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~ll 510 (710)
+...+..+...+...|++++|...|+++.+.... +...|..+..++...|++++|+..|++.++.... .+...+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 3445666677777777777777777777664332 5666777777777777777777777777764211 0355677777
Q ss_pred HHHHhc-CChHHHHHHHHHHHHhCCc
Q 005178 511 SVVSLC-ETSEDVGKVITCLQQANPK 535 (710)
Q Consensus 511 ~~~~~~-g~~~~a~~~~~~~~~~~p~ 535 (710)
.+|... |++++|.+.++.+.+..|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 777777 7777777777777776664
No 167
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.17 E-value=2.8e-05 Score=67.68 Aligned_cols=96 Identities=13% Similarity=0.053 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 005178 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477 (710)
Q Consensus 398 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 477 (710)
..+..+...+.+.|++++|+..|++..... +.+...|..+..+|...|++++|...|+++.+.+.. +...|..+..+
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 95 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHH
Confidence 345556666777788888888887777765 567777777777888888888888888887775432 56667777777
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 005178 478 LGKARRIDDLVRVFGVSID 496 (710)
Q Consensus 478 ~~~~g~~~~A~~~~~~m~~ 496 (710)
|...|++++|+..|++.++
T Consensus 96 ~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 8888888888888877765
No 168
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.16 E-value=1.8e-05 Score=84.16 Aligned_cols=83 Identities=13% Similarity=0.001 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhc
Q 005178 468 VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNS 547 (710)
Q Consensus 468 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~ 547 (710)
...|..+..+|.+.|++++|+..|+++++.... +...|..+..+|...|++++|...|+++.+++|++..+...++.++
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~ 395 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQ 395 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 456677777777778888888777777764322 4567777777888888888888888888877777766666665544
Q ss_pred CCcc
Q 005178 548 TGFE 551 (710)
Q Consensus 548 ~~~~ 551 (710)
...+
T Consensus 396 ~~~~ 399 (457)
T 1kt0_A 396 KKAK 399 (457)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
No 169
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.15 E-value=5.5e-05 Score=79.81 Aligned_cols=161 Identities=10% Similarity=-0.041 Sum_probs=101.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHH----cCCCcC-HHH
Q 005178 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDN----YSYTAMLNIYGSGGNVDNAIELFEEMSE----LGVAIN-VMG 470 (710)
Q Consensus 400 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~~~ 470 (710)
+..+...|...|++++|.+++..+.......++. .+.+.+...+...|++++|..++.+... .+..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4566777777777777777777665421101111 2233444455567888888888887754 222222 457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC--CC--CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHhC---CcH----HH
Q 005178 471 CTCLIQCLGKARRIDDLVRVFGVSIDR--GV--KPD-DRLCGCLLSVVSLCETSEDVGKVITCLQQAN---PKL----VA 538 (710)
Q Consensus 471 ~~~li~~~~~~g~~~~A~~~~~~m~~~--~~--~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~----~~ 538 (710)
+..+...|...|++++|..+++++... +. .+. ..++..++..|...|++++|..+++++..+. ++. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 778888899999999999998887632 22 222 3377788889999999999999998876542 221 22
Q ss_pred HHHHHHhhcCCcccHHHHHHHH
Q 005178 539 FLNLIEDNSTGFENIKEEFRNV 560 (710)
Q Consensus 539 ~~~~L~~~~~~~~~~~~~a~~~ 560 (710)
+...+|..+...++..+....+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~ 239 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYF 239 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHH
Confidence 4455566555555444443333
No 170
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.15 E-value=4.2e-05 Score=70.90 Aligned_cols=94 Identities=14% Similarity=-0.031 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 005178 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477 (710)
Q Consensus 398 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 477 (710)
..+..+..+|...|++++|+..+++..+.. +.+...+..+..+|...|++++|...|++..+.... +...+..+..+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 165 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID--KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELC 165 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHH
Confidence 455556666666666666666666666554 455666666666666666666666666666654321 44555555555
Q ss_pred HHhcCCHHHHH-HHHHHH
Q 005178 478 LGKARRIDDLV-RVFGVS 494 (710)
Q Consensus 478 ~~~~g~~~~A~-~~~~~m 494 (710)
+...++.+++. ..|..|
T Consensus 166 ~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 166 VNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp HHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 55555555444 333333
No 171
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.15 E-value=5.4e-05 Score=65.09 Aligned_cols=98 Identities=14% Similarity=-0.027 Sum_probs=73.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 005178 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLI 475 (710)
Q Consensus 396 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 475 (710)
+...+..+...+...|++++|...|.+..... +.+...|..+..+|...|++++|...+++..+.... +...|..+.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHH
Confidence 56667777777777788888888877777665 456777777888888888888888888877775433 567777778
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 005178 476 QCLGKARRIDDLVRVFGVSID 496 (710)
Q Consensus 476 ~~~~~~g~~~~A~~~~~~m~~ 496 (710)
.+|...|++++|+..|++.++
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 888888888888888877764
No 172
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.14 E-value=4.8e-05 Score=68.01 Aligned_cols=99 Identities=10% Similarity=-0.025 Sum_probs=75.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 005178 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLI 475 (710)
Q Consensus 396 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 475 (710)
+...+..+...+...|++++|++.|++..+.. +.+...|..+..+|...|++++|+..|++.++.... +...|..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 34566667777778888888888888877765 557777888888888888888888888888775432 577777888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 005178 476 QCLGKARRIDDLVRVFGVSIDR 497 (710)
Q Consensus 476 ~~~~~~g~~~~A~~~~~~m~~~ 497 (710)
.+|.+.|++++|+..|++.++.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 8888888888888888887753
No 173
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.12 E-value=2.6e-05 Score=66.16 Aligned_cols=95 Identities=17% Similarity=0.155 Sum_probs=43.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC--cC----HHHHHH
Q 005178 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA--IN----VMGCTC 473 (710)
Q Consensus 400 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~----~~~~~~ 473 (710)
+..+...+...|++++|...|++..+.. +.+...+..+...|...|++++|...++++.+.... ++ ..+|..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 3444444455555555555555544433 334444555555555555555555555554442110 11 334444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 005178 474 LIQCLGKARRIDDLVRVFGVSID 496 (710)
Q Consensus 474 li~~~~~~g~~~~A~~~~~~m~~ 496 (710)
+..+|.+.|++++|...|+++.+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 44444444444444444444443
No 174
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.08 E-value=3.3e-05 Score=65.12 Aligned_cols=93 Identities=9% Similarity=-0.019 Sum_probs=65.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Q 005178 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK 480 (710)
Q Consensus 401 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 480 (710)
..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..|++.++.... +...+..+..+|.+
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 345556667777777777777777665 456777777777777777777777777777765432 56667777777777
Q ss_pred cCCHHHHHHHHHHHHH
Q 005178 481 ARRIDDLVRVFGVSID 496 (710)
Q Consensus 481 ~g~~~~A~~~~~~m~~ 496 (710)
.|++++|+..|++.++
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 98 EHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHH
Confidence 7777777777777765
No 175
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.06 E-value=4.1e-05 Score=64.89 Aligned_cols=107 Identities=13% Similarity=0.031 Sum_probs=57.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCC----HHHHHHH
Q 005178 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC-KPD----NYSYTAM 439 (710)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~----~~~~~~l 439 (710)
+..+...+...|++++|...|++..+... .+...+..+...|...|++++|...+++....... .++ ..++..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 44444555555555555555555554421 24455555555556666666666666555543210 111 5556666
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHH
Q 005178 440 LNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474 (710)
Q Consensus 440 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 474 (710)
..+|...|++++|...|+++.+.. |+...+..+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l 118 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKC 118 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHH
Confidence 666666777777777776666632 344444433
No 176
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.06 E-value=5.2e-05 Score=62.21 Aligned_cols=92 Identities=10% Similarity=-0.079 Sum_probs=38.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--CHHHHHHHHHHHH
Q 005178 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP--DNYSYTAMLNIYG 444 (710)
Q Consensus 367 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~li~~~~ 444 (710)
.+...+...|++++|...|++..+.... +...+..+...+...|++++|.+.|++..+.. +. +...+..+..+|.
T Consensus 11 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~l~~~~~ 87 (112)
T 2kck_A 11 LEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI--EDEYNKDVWAAKADALR 87 (112)
T ss_dssp GHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--CCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cccchHHHHHHHHHHHH
Confidence 3334444444444444444444433211 33334444444444444444444444444432 22 3444444444444
Q ss_pred hC-CCHHHHHHHHHHHHH
Q 005178 445 SG-GNVDNAIELFEEMSE 461 (710)
Q Consensus 445 ~~-g~~~~A~~~~~~m~~ 461 (710)
.. |++++|.+.+++..+
T Consensus 88 ~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 88 YIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp TCSSCSHHHHHHHHHHGG
T ss_pred HHhCCHHHHHHHHHHHhh
Confidence 44 444444444444443
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.05 E-value=0.00012 Score=62.13 Aligned_cols=102 Identities=16% Similarity=-0.041 Sum_probs=67.7
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCcCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHH
Q 005178 438 AMLNIYGSGGNVDNAIELFEEMSELGVAINV---MGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD--DRLCGCLLSV 512 (710)
Q Consensus 438 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~ 512 (710)
.+...+...|++++|...|+++.+.... +. ..+..+..+|.+.|++++|+..|+++++...... ...+..+..+
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 4455666777777777777777664322 22 4666677777777777777777777775332110 4456667777
Q ss_pred HHhcCChHHHHHHHHHHHHhCCcHHHHH
Q 005178 513 VSLCETSEDVGKVITCLQQANPKLVAFL 540 (710)
Q Consensus 513 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 540 (710)
+...|++++|...|+.+.+..|+.....
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 113 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSDAAR 113 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCChHHH
Confidence 7788888888888888877777765443
No 178
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.04 E-value=3.5e-05 Score=67.27 Aligned_cols=104 Identities=10% Similarity=0.017 Sum_probs=74.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc------C-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC
Q 005178 436 YTAMLNIYGSGGNVDNAIELFEEMSELGVAI------N-----VMGCTCLIQCLGKARRIDDLVRVFGVSIDR-----GV 499 (710)
Q Consensus 436 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p------~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~ 499 (710)
+......+.+.|++++|+..|++.++..... + ...|..+..++.+.|++++|+..+++.++. .+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 3445555666666666666666666532220 2 237888888888888888888888888873 12
Q ss_pred CCCHH-HH----HHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHH
Q 005178 500 KPDDR-LC----GCLLSVVSLCETSEDVGKVITCLQQANPKLVAF 539 (710)
Q Consensus 500 ~p~~~-~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 539 (710)
.|+.. .| .....++...|++++|+..|+++.++.|++...
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 66644 77 888899999999999999999999988876543
No 179
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.04 E-value=0.00018 Score=62.50 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=10.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005178 294 AFSVLGKMFGESGDYDGIRYVLQEMK 319 (710)
Q Consensus 294 ~~~~li~~~~~~g~~~~A~~~~~~m~ 319 (710)
.+..+...+...|++++|...|++..
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~ 55 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQAL 55 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 33333334444444444444444433
No 180
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.03 E-value=2.1e-05 Score=80.87 Aligned_cols=81 Identities=7% Similarity=-0.102 Sum_probs=63.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhh
Q 005178 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDN 546 (710)
Q Consensus 467 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 546 (710)
+...|..+..+|.+.|++++|+..+++.++.... +...|..+..+|...|++++|.+.|+++.+++|++..+...|+.+
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~ 350 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKV 350 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4567788888888888888888888888874322 466788888888889999999999999888888887777766655
Q ss_pred cC
Q 005178 547 ST 548 (710)
Q Consensus 547 ~~ 548 (710)
+.
T Consensus 351 ~~ 352 (370)
T 1ihg_A 351 KQ 352 (370)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 181
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.97 E-value=0.00011 Score=79.89 Aligned_cols=173 Identities=7% Similarity=-0.074 Sum_probs=140.0
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCC----------HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc
Q 005178 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN----------VDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481 (710)
Q Consensus 412 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 481 (710)
.-++|.+.++++.+.+ +.+..+|+.--.++...|+ +++++..++++.+...+ +..+|..-..++.+.
T Consensus 44 ~~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 44 LDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRL 120 (567)
T ss_dssp CSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 4468899999999887 6788889888888877777 99999999999997665 888999999999999
Q ss_pred C--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCc--------
Q 005178 482 R--RIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCE-TSEDVGKVITCLQQANPKLVAFLNLIEDNSTGF-------- 550 (710)
Q Consensus 482 g--~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~-------- 550 (710)
| ++++++..++++++...+ +...|+.-..++.+.| .++++.+.+.++.+.+|++..++...+......
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 121 PEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred ccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 9 779999999999987655 7788988888888888 899999999999999999998876655432211
Q ss_pred -----ccHHHHHHHHHH-hccCCCChh-hHHHHHHHHHhCCCHHH
Q 005178 551 -----ENIKEEFRNVIK-DTEVDARRP-FCNCLIDICRNRNLNER 588 (710)
Q Consensus 551 -----~~~~~~a~~~~~-~~~~~~~~~-~~~~l~~~~~~~g~~~~ 588 (710)
.+..+++.+++. .+...|+.. .|.-+.+.+.+.|+.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 135566666654 466677544 89999999999888655
No 182
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.97 E-value=1.7e-05 Score=80.62 Aligned_cols=147 Identities=11% Similarity=-0.003 Sum_probs=81.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 005178 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLI 475 (710)
Q Consensus 396 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 475 (710)
....+..+...+.+.|++++|...|.+..... |+... +...|+.+++...+. ...|..+.
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~---p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla 237 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM---GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIA 237 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS---CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh---ccchh-------hhhcccHHHHHHHHH----------HHHHHHHH
Confidence 35567777777788888888888888877643 33321 223344444332221 13677788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHH
Q 005178 476 QCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKE 555 (710)
Q Consensus 476 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~ 555 (710)
.+|.+.|++++|+..|++.++... -+...|..+..+|...|++++|...|+++.+++|++..+...|+.+........+
T Consensus 238 ~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 238 ACLIKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Confidence 888888999999999888887432 2566788888888889999999999988888888887777666654333233344
Q ss_pred HHHHHHHh
Q 005178 556 EFRNVIKD 563 (710)
Q Consensus 556 ~a~~~~~~ 563 (710)
++..++++
T Consensus 317 ~a~~~~~~ 324 (338)
T 2if4_A 317 KQKEMYKG 324 (338)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 44444433
No 183
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.96 E-value=6.9e-05 Score=66.17 Aligned_cols=138 Identities=11% Similarity=-0.011 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-cC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----H
Q 005178 434 YSYTAMLNIYGSGGNVDNAIELFEEMSELGVA-IN----VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGV-KPD----D 503 (710)
Q Consensus 434 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~ 503 (710)
.++..+...|...|++++|...+++..+.... .+ ..++..+...|...|++++|+..+++..+... ..+ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 35666667777777777777777776542111 11 24667777778888888888888887764210 011 3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHHHHhccCCCChhhHHHHHHHHHhC
Q 005178 504 RLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNR 583 (710)
Q Consensus 504 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~ 583 (710)
..+..+..++...|++++|.+.++++.+..+.. +.... ....+..+..+|...
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--------------~~~~~-------------~~~~~~~la~~~~~~ 142 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--------------KDRIG-------------EGRACWSLGNAYTAL 142 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--------------TCHHH-------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc--------------cchHh-------------HHHHHHHHHHHHHHc
Confidence 366777888889999999998887765431110 00000 012567788899999
Q ss_pred CCHHHHHHHHHHHHH
Q 005178 584 NLNERAHELLYLGTL 598 (710)
Q Consensus 584 g~~~~A~~~~~~~~~ 598 (710)
|++++|.+.++++.+
T Consensus 143 g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 143 GNHDQAMHFAEKHLE 157 (164)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999999998753
No 184
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.94 E-value=6.2e-05 Score=66.48 Aligned_cols=61 Identities=21% Similarity=0.172 Sum_probs=26.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005178 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPD----NYSYTAMLNIYGSGGNVDNAIELFEEMS 460 (710)
Q Consensus 400 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~ 460 (710)
+..+...|...|++++|.+.+++..+......+ ...+..+...|...|++++|...+++..
T Consensus 52 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 52 YSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344444444455555555544443321100011 2334444555555555555555555443
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.93 E-value=1.5e-05 Score=66.81 Aligned_cols=93 Identities=10% Similarity=-0.059 Sum_probs=57.9
Q ss_pred CCCHHHHHHHHHHHHHcC--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 005178 446 GGNVDNAIELFEEMSELG--VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVG 523 (710)
Q Consensus 446 ~g~~~~A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 523 (710)
.|++++|+..|++.++.+ -+.+...|..+..+|.+.|++++|+..|++.++.... +...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 466667777777766643 1123456666777777777777777777777664322 3556666777777777777777
Q ss_pred HHHHHHHHhCCcHHHH
Q 005178 524 KVITCLQQANPKLVAF 539 (710)
Q Consensus 524 ~~~~~~~~~~p~~~~~ 539 (710)
..++++.+..|++..+
T Consensus 82 ~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 82 ELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHhCCCcHHH
Confidence 7777777766665543
No 186
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.91 E-value=6.4e-05 Score=80.27 Aligned_cols=117 Identities=14% Similarity=0.022 Sum_probs=56.8
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHH
Q 005178 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDN 451 (710)
Q Consensus 372 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 451 (710)
|.+.|++++|++.|++..+.... +...|..+..+|.+.|++++|++.+++..+.. +.+...|..+..+|...|++++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHH
Confidence 33445555555555555544222 34555555555555555555555555555543 3445555555555555555555
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 005178 452 AIELFEEMSELGVAINVMGCTCLIQC--LGKARRIDDLVRVFG 492 (710)
Q Consensus 452 A~~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~ 492 (710)
|...|+++.+.... +...+..+..+ +.+.|++++|++.++
T Consensus 93 A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 55555555553221 22233333333 555555555555555
No 187
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.89 E-value=1.8e-05 Score=84.53 Aligned_cols=121 Identities=10% Similarity=-0.069 Sum_probs=96.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC
Q 005178 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKAR 482 (710)
Q Consensus 403 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 482 (710)
+...+.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|+..++++.+.... +...|..+..+|.+.|
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 3445667899999999999999876 677999999999999999999999999999996533 6788999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCChHHHHHHHH
Q 005178 483 RIDDLVRVFGVSIDRGVKPDDRLCGCLLSV--VSLCETSEDVGKVIT 527 (710)
Q Consensus 483 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~--~~~~g~~~~a~~~~~ 527 (710)
++++|++.|+++++.... +...+..+..+ +.+.|++++|++.++
T Consensus 89 ~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 89 KFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999874322 22344445444 788899999999998
No 188
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.85 E-value=0.00017 Score=64.28 Aligned_cols=65 Identities=15% Similarity=0.073 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005178 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDR 497 (710)
Q Consensus 432 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 497 (710)
+...|..+..+|.+.|++++|+..+++.++.+.. +...|..+..+|...|++++|+..|++.+..
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 3466777777788888888888888887775432 5677777788888888888888888877763
No 189
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.84 E-value=0.00039 Score=58.77 Aligned_cols=94 Identities=11% Similarity=-0.035 Sum_probs=61.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcC--HHHHHHHHH
Q 005178 402 TLLNMCADIGLVEEAERLFEDMKLSDYCKPDN---YSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN--VMGCTCLIQ 476 (710)
Q Consensus 402 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~ 476 (710)
.+...+...|++++|...|+.+.+.. +.+. ..+..+..+|...|++++|...|+++.+...... ...+..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 34555666777777777777776654 2233 4666677777777777777777777766432211 455666777
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 005178 477 CLGKARRIDDLVRVFGVSIDR 497 (710)
Q Consensus 477 ~~~~~g~~~~A~~~~~~m~~~ 497 (710)
+|.+.|++++|+..|+++++.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 777777777777777777653
No 190
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.82 E-value=0.00024 Score=75.48 Aligned_cols=138 Identities=14% Similarity=-0.006 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005178 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406 (710)
Q Consensus 327 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 406 (710)
...|..+...+.+.|++++|+..|++.++.. |+...+ ..+... .+... ....|..+..+
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~----~~~~~----~~~~~~nla~~ 326 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGL-----------SEKESK----ASESF----LLAAFLNLAMC 326 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSC-----------CHHHHH----HHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccC-----------ChHHHH----HHHHH----HHHHHHHHHHH
Confidence 4466667777777777777777777766531 111000 000000 00000 13456666667
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHH
Q 005178 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486 (710)
Q Consensus 407 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 486 (710)
|.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|+..|+++++.... +...+..+..++.+.|+.++
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLD--SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777776655 456667777777777777777777777777664321 34456666666666666665
Q ss_pred HH
Q 005178 487 LV 488 (710)
Q Consensus 487 A~ 488 (710)
+.
T Consensus 404 a~ 405 (457)
T 1kt0_A 404 RD 405 (457)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 191
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.75 E-value=0.00029 Score=72.38 Aligned_cols=139 Identities=9% Similarity=-0.017 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005178 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406 (710)
Q Consensus 327 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 406 (710)
...+..+...+.+.|++++|+..|++.++.- +. +......+.+.. .. +.+...|..+..+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~----------~~~~~~~~~~~~----~~----~~~~~~~~nla~~ 282 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EG----------SRAAAEDADGAK----LQ----PVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HH----------HHHHSCHHHHGG----GH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hc----------CccccChHHHHH----HH----HHHHHHHHHHHHH
Confidence 4556777777777888888888777766420 00 000001111110 00 0134456666666
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHH
Q 005178 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486 (710)
Q Consensus 407 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 486 (710)
|.+.|++++|++.+++..+.. +.+...|..+..+|...|++++|...|+++.+.... +...+..+..++.+.++.++
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~ 359 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEID--PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKD 359 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 667777777777777766654 455666666666677777777777777666664322 44555555555555555554
Q ss_pred HH
Q 005178 487 LV 488 (710)
Q Consensus 487 A~ 488 (710)
+.
T Consensus 360 a~ 361 (370)
T 1ihg_A 360 KE 361 (370)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 192
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.72 E-value=0.00046 Score=60.20 Aligned_cols=98 Identities=11% Similarity=0.012 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-----CH-----HHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----C
Q 005178 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP-----DN-----YSYTAMLNIYGSGGNVDNAIELFEEMSEL-----G 463 (710)
Q Consensus 399 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~ 463 (710)
.+......+.+.|++++|++.|++..+.....| +. ..|..+..++.+.|++++|+..+++.++. .
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 344455566667777777777777666541000 23 38888999999999999999999998874 1
Q ss_pred CCcC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 005178 464 VAIN-VMGC----TCLIQCLGKARRIDDLVRVFGVSID 496 (710)
Q Consensus 464 ~~p~-~~~~----~~li~~~~~~g~~~~A~~~~~~m~~ 496 (710)
+.|+ ...| .....++...|++++|+..|++.++
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 1454 5677 8899999999999999999999875
No 193
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.72 E-value=6.9e-05 Score=76.10 Aligned_cols=153 Identities=11% Similarity=-0.057 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 005178 362 EKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441 (710)
Q Consensus 362 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~ 441 (710)
...+..+...+.+.|++++|+..|++..+. .|+... +...|+.+++...+ . ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHH
Confidence 556777888889999999999999998875 233221 22233344433222 1 136788888
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHH-HHhcCCh
Q 005178 442 IYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD-RLCGCLLSV-VSLCETS 519 (710)
Q Consensus 442 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~-~~~~g~~ 519 (710)
+|.+.|++++|+..+++.++... .+...|..+..+|...|++++|+..|+++++ +.|+. ..+..+..+ ....+..
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~~~~ 315 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALAEQEKALY 315 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888543 2678889999999999999999999998865 34443 344444444 2334566
Q ss_pred HHHHHHHHHHHHhCCcHH
Q 005178 520 EDVGKVITCLQQANPKLV 537 (710)
Q Consensus 520 ~~a~~~~~~~~~~~p~~~ 537 (710)
+++.++|+.+.+..|++.
T Consensus 316 ~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 316 QKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp ------------------
T ss_pred HHHHHHHHHhhCCCCCCC
Confidence 777888888887777653
No 194
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.69 E-value=9.7e-05 Score=64.32 Aligned_cols=60 Identities=13% Similarity=0.186 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----------CChHHHHHHHHHHHHhCCcHHHHHHHHH
Q 005178 484 IDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLC-----------ETSEDVGKVITCLQQANPKLVAFLNLIE 544 (710)
Q Consensus 484 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~~~L~ 544 (710)
+++|+..|++.++.+.. +...|..+..+|... |++++|++.|+++.+++|++..+...+.
T Consensus 62 ~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~ 132 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPK-KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 34666666666653222 344666666666655 4788999999999999998876665554
No 195
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.68 E-value=6.5e-05 Score=62.76 Aligned_cols=20 Identities=15% Similarity=0.182 Sum_probs=7.5
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q 005178 403 LLNMCADIGLVEEAERLFED 422 (710)
Q Consensus 403 li~~~~~~g~~~~A~~~~~~ 422 (710)
+..+|...|++++|+..|++
T Consensus 67 l~~~~~~~g~~~~A~~~~~~ 86 (117)
T 3k9i_A 67 YAMVLYNLGRYEQGVELLLK 86 (117)
T ss_dssp HHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHH
Confidence 33333333333333333333
No 196
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.52 E-value=0.0028 Score=54.52 Aligned_cols=86 Identities=9% Similarity=0.006 Sum_probs=35.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-
Q 005178 265 DVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE----SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK- 339 (710)
Q Consensus 265 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~- 339 (710)
..|...+.+++|++.|++..+.| +...+..|..+|.. .+++++|...|++..+.| +...+..|...|..
T Consensus 33 ~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G 106 (138)
T 1klx_A 33 LVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAG 106 (138)
T ss_dssp HHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCC
Confidence 33333334444444444444432 33344444444443 344444444444444432 33333344444444
Q ss_pred ---cCCHHHHHHHHHHHHHC
Q 005178 340 ---AGKPGLARSLFDEMVES 356 (710)
Q Consensus 340 ---~g~~~~A~~~~~~m~~~ 356 (710)
.+++++|...|++..+.
T Consensus 107 ~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 107 KGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp SSSCCCHHHHHHHHHHHHHT
T ss_pred CCCCcCHHHHHHHHHHHHHC
Confidence 34444444444444443
No 197
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.50 E-value=0.00052 Score=72.83 Aligned_cols=124 Identities=9% Similarity=-0.048 Sum_probs=61.3
Q ss_pred HHhcCCHHHHHHHHHHHHhC---CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----CCCCCC-HHHHHH
Q 005178 372 YGKARWAKDALELWERMREN---KWPM----DFILYNTLLNMCADIGLVEEAERLFEDMKLS-----DYCKPD-NYSYTA 438 (710)
Q Consensus 372 ~~~~g~~~~A~~~~~~m~~~---~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~-~~~~~~ 438 (710)
+...|++++|+.++++.++. -+.+ ...+++.|..+|...|++++|+.++++..+. |...|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34556666666666655431 0111 1335555666666666666666655554331 211122 245566
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHH-----cCCC-c-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005178 439 MLNIYGSGGNVDNAIELFEEMSE-----LGVA-I-NVMGCTCLIQCLGKARRIDDLVRVFGVSI 495 (710)
Q Consensus 439 li~~~~~~g~~~~A~~~~~~m~~-----~~~~-p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 495 (710)
|...|...|++++|..++++..+ .|.. | ...+.+.+..++...|++++|..+|.++.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666665543 1221 1 12233444445555555555555555554
No 198
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.49 E-value=0.0045 Score=53.13 Aligned_cols=109 Identities=11% Similarity=0.066 Sum_probs=53.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh----cCCHHHH
Q 005178 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK----ARRIDDL 487 (710)
Q Consensus 412 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A 487 (710)
++++|.+.|++..+.+ .++.. |...|...+.+++|...|++..+.| +...+..|...|.. .+++++|
T Consensus 10 d~~~A~~~~~~aa~~g--~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 10 DLKKAIQYYVKACELN--EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHTT--CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHcCC--CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 3445555555555444 23322 4444444455555555555555432 34444555555554 4555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHh
Q 005178 488 VRVFGVSIDRGVKPDDRLCGCLLSVVSL----CETSEDVGKVITCLQQA 532 (710)
Q Consensus 488 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~ 532 (710)
+..|++..+.| +...+..|...|.. .++.++|.++|++..+.
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 55555555543 34444445555554 45555555555555443
No 199
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.48 E-value=0.00029 Score=61.34 Aligned_cols=98 Identities=19% Similarity=0.148 Sum_probs=65.8
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCC----------HHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 005178 409 DIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN----------VDNAIELFEEMSELGVAINVMGCTCLIQCL 478 (710)
Q Consensus 409 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 478 (710)
+.+.+++|.+.++...+.. +.+...|..+..++...++ +++|+..|++.++.+.. +...|..+..+|
T Consensus 14 r~~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay 90 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH
Confidence 4455667777777766665 5666677766666666654 35777777777774433 566777777777
Q ss_pred Hhc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005178 479 GKA-----------RRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511 (710)
Q Consensus 479 ~~~-----------g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 511 (710)
... |++++|++.|++.++ +.|+...|...+.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~ 132 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 766 478889999988887 5666555544433
No 200
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.48 E-value=0.00045 Score=73.31 Aligned_cols=88 Identities=10% Similarity=-0.056 Sum_probs=43.7
Q ss_pred HHhcCCHHHHHHHHHHHHHC-----C-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC-CC-CHHHHHH
Q 005178 302 FGESGDYDGIRYVLQEMKSL-----G-VQPN-LVVYNTLLEAMGKAGKPGLARSLFDEMVES-----GL-TP-DEKTLTA 367 (710)
Q Consensus 302 ~~~~g~~~~A~~~~~~m~~~-----g-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p-~~~~~~~ 367 (710)
+..+|++++|+.++++.++. | -.|+ ..+++.|..+|...|++++|..++++.++. |- .| ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44566666666666655431 1 0111 234556666666666666666666554421 10 11 1234555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 005178 368 LIKIYGKARWAKDALELWERMR 389 (710)
Q Consensus 368 li~~~~~~g~~~~A~~~~~~m~ 389 (710)
|...|...|++++|+.+|++..
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 5555555555555555555443
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.45 E-value=0.00012 Score=60.15 Aligned_cols=62 Identities=15% Similarity=0.101 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 005178 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461 (710)
Q Consensus 398 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (710)
..+..+...+...|++++|++.|++..+.. +.+...|..+..+|...|++++|+..+++.++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ--PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 344444455555555555555555555443 34455555555555555555555555555554
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.44 E-value=0.0006 Score=53.32 Aligned_cols=78 Identities=6% Similarity=-0.036 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhh
Q 005178 468 VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDN 546 (710)
Q Consensus 468 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 546 (710)
...+..+...+...|++++|+..|++.++.... +...+..+..+|...|++++|.+.++++.+.+|++..+...++.+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 445566666677777777777777776653221 455666777777777777777777777777777766666555543
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.31 E-value=0.0019 Score=53.31 Aligned_cols=78 Identities=15% Similarity=0.038 Sum_probs=36.5
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005178 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460 (710)
Q Consensus 381 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 460 (710)
|+..|++..+.... +...+..+...|...|++++|+..|++..+.. +.+...|..+..+|...|++++|...|++..
T Consensus 4 a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD--PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444433221 34444444455555555555555555544443 3344445555555555555555555555444
Q ss_pred H
Q 005178 461 E 461 (710)
Q Consensus 461 ~ 461 (710)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 3
No 204
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.30 E-value=0.00096 Score=54.44 Aligned_cols=68 Identities=6% Similarity=-0.171 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcH
Q 005178 468 VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKL 536 (710)
Q Consensus 468 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 536 (710)
...|..+...+.+.|++++|+..|++.++.... +...+..+..+|...|++++|++.++++.+++|++
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 344555555666666666666666666543221 34455566666666666666666666666666654
No 205
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.29 E-value=0.0025 Score=52.52 Aligned_cols=77 Identities=9% Similarity=0.060 Sum_probs=36.8
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005178 416 AERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSI 495 (710)
Q Consensus 416 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 495 (710)
|++.|++..+.. +.+...+..+...|...|++++|...|++.++.... +...|..+..+|...|++++|+..|++.+
T Consensus 4 a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQG--TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444444433 344455555555555555555555555555443221 33444444445555555555555554443
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.28 E-value=0.003 Score=49.15 Aligned_cols=59 Identities=22% Similarity=0.287 Sum_probs=23.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005178 436 YTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSI 495 (710)
Q Consensus 436 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 495 (710)
+..+...|...|++++|...|++..+.... +...+..+..+|.+.|++++|+..|++..
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 70 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 333334444444444444444444332211 23334444444444444444444444443
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.03 E-value=0.0027 Score=50.97 Aligned_cols=64 Identities=23% Similarity=0.251 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005178 431 PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSI 495 (710)
Q Consensus 431 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 495 (710)
.+...+..+..+|...|++++|+..|+++++.... +...|..+..+|.+.|++++|+..|++.+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555555555666666666666666665554322 34455555555666666666666655554
No 208
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.99 E-value=0.011 Score=59.08 Aligned_cols=73 Identities=8% Similarity=-0.092 Sum_probs=62.3
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHH
Q 005178 465 AINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAF 539 (710)
Q Consensus 465 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 539 (710)
..+..+|..+...+...|++++|+..+++++..+ |+...|..+..++.-.|++++|.+.|+++..++|...++
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~ 346 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTL 346 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChH
Confidence 4577888888777777899999999999999864 787788788888899999999999999999999988653
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.89 E-value=0.0047 Score=49.46 Aligned_cols=64 Identities=20% Similarity=0.183 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 005178 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461 (710)
Q Consensus 396 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (710)
+...+..+..+|...|++++|+..|++..+.. +.+...|..+..+|...|++++|...|++.++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 56677778888888888888888888887766 45677888888888888888888888887765
No 210
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.76 E-value=0.012 Score=50.45 Aligned_cols=94 Identities=14% Similarity=0.072 Sum_probs=70.5
Q ss_pred CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChHHH
Q 005178 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKAR---RIDDLVRVFGVSIDRGVKP--DDRLCGCLLSVVSLCETSEDV 522 (710)
Q Consensus 448 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~g~~~~a 522 (710)
.+..+.+-|.+..+.|. ++..+...+..++++.+ ++++++.+|++..+.+ .| +...+..|.-+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 34556666776666555 57788778888888887 5668898998888754 24 234556677788999999999
Q ss_pred HHHHHHHHHhCCcHHHHHHHH
Q 005178 523 GKVITCLQQANPKLVAFLNLI 543 (710)
Q Consensus 523 ~~~~~~~~~~~p~~~~~~~~L 543 (710)
.++++.+.+++|++..+..+.
T Consensus 91 ~~y~~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNNQAKELE 111 (152)
T ss_dssp HHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHH
Confidence 999999999999887765544
No 211
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.74 E-value=0.047 Score=62.39 Aligned_cols=99 Identities=14% Similarity=0.129 Sum_probs=49.0
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHH
Q 005178 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487 (710)
Q Consensus 408 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 487 (710)
...|++++|.++.+. ..+...|..+...+.+.|+++.|.+.|.++.+ |..+...|...|+.+..
T Consensus 663 l~~~~~~~A~~~~~~-------~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~ 726 (814)
T 3mkq_A 663 LKVGQLTLARDLLTD-------ESAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGL 726 (814)
T ss_dssp HHHTCHHHHHHHHTT-------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHH
T ss_pred hhcCCHHHHHHHHHh-------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHH
Confidence 445666666555322 23455666666666666666666666665532 22233334445555544
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 005178 488 VRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITC 528 (710)
Q Consensus 488 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 528 (710)
.++-+.....|- ++....+|.+.|++++|++++..
T Consensus 727 ~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 727 VTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 444444433321 22233344455666666655544
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.73 E-value=0.0096 Score=61.97 Aligned_cols=86 Identities=8% Similarity=-0.152 Sum_probs=53.7
Q ss_pred CCCHHHHHHHHHHHHHc---CCCcC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CC-CCCCH-HHHHHHHH
Q 005178 446 GGNVDNAIELFEEMSEL---GVAIN----VMGCTCLIQCLGKARRIDDLVRVFGVSID-----RG-VKPDD-RLCGCLLS 511 (710)
Q Consensus 446 ~g~~~~A~~~~~~m~~~---~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~-~~p~~-~~~~~ll~ 511 (710)
.|++++|..++++.++. -+.|+ ..+++.|..+|...|++++|+.+++++++ .| -.|+. .+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 45667777766665541 11121 34566777777777777777777776653 12 12332 26777777
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 005178 512 VVSLCETSEDVGKVITCLQQ 531 (710)
Q Consensus 512 ~~~~~g~~~~a~~~~~~~~~ 531 (710)
.|...|++++|+.+++++.+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 88888888888888877654
No 213
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.72 E-value=0.12 Score=58.97 Aligned_cols=45 Identities=27% Similarity=0.153 Sum_probs=23.0
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005178 338 GKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388 (710)
Q Consensus 338 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 388 (710)
...|++++|.++.+.+ .+...|..+...+.+.++++.|.+.|.++
T Consensus 663 l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3455555555543222 23445555555555555555555555544
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.69 E-value=0.022 Score=56.86 Aligned_cols=74 Identities=8% Similarity=0.042 Sum_probs=61.2
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 005178 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCG 507 (710)
Q Consensus 430 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 507 (710)
+.+..+|..+...+...|++++|...+++++..+ |+...|..+...+.-.|++++|.+.|++... +.|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHH
Confidence 5788888888887887899999999999998865 7888888888888899999999999998887 456666654
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.66 E-value=0.017 Score=60.24 Aligned_cols=102 Identities=3% Similarity=-0.091 Sum_probs=69.9
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHc---CCCcC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCCH-HH
Q 005178 440 LNIYGSGGNVDNAIELFEEMSEL---GVAIN----VMGCTCLIQCLGKARRIDDLVRVFGVSIDR-----G-VKPDD-RL 505 (710)
Q Consensus 440 i~~~~~~g~~~~A~~~~~~m~~~---~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-~~p~~-~~ 505 (710)
+.-+.+.|++++|..++++.++. -+.|+ ..+++.+...|...|++++|+.+++++++. | -.|+. .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44455677888888888877652 11222 456788888888888888888888877631 2 22332 36
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH-----hCCcHHHHHH
Q 005178 506 CGCLLSVVSLCETSEDVGKVITCLQQ-----ANPKLVAFLN 541 (710)
Q Consensus 506 ~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~ 541 (710)
++.|...|...|++++|+.+++++.+ ..|++..+..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 77888888999999999998888765 3566655443
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.65 E-value=0.0029 Score=50.36 Aligned_cols=62 Identities=8% Similarity=-0.041 Sum_probs=31.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHH
Q 005178 477 CLGKARRIDDLVRVFGVSIDRGVKPDDR-LCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAF 539 (710)
Q Consensus 477 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 539 (710)
.+.+.|++++|+..|+++++.... +.. .+..+..+|...|++++|.+.|+++.+.+|++..+
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 71 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPAL 71 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence 344555555555555555543211 233 44455555555555555555555555555554443
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.56 E-value=0.012 Score=61.18 Aligned_cols=92 Identities=8% Similarity=-0.063 Sum_probs=68.2
Q ss_pred hcCCHHHHHHHHHHHHH---CCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCccc
Q 005178 480 KARRIDDLVRVFGVSID---RGVKPD----DRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFEN 552 (710)
Q Consensus 480 ~~g~~~~A~~~~~~m~~---~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~ 552 (710)
..|++++|+.++++.++ .-+.|+ ..+++.|..+|...|++++|+.+++++..+. ...+|
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~------~~~lG-------- 375 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPY------SKHYP-------- 375 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------HHHSC--------
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH------HHHcC--------
Confidence 46899999999998874 223343 2488899999999999999999998875420 00111
Q ss_pred HHHHHHHHHHhccCCCChh-hHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005178 553 IKEEFRNVIKDTEVDARRP-FCNCLIDICRNRNLNERAHELLYLGT 597 (710)
Q Consensus 553 ~~~~a~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~ 597 (710)
+..|+.. .++.|+.+|...|++++|+.++++++
T Consensus 376 ------------~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 376 ------------VYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp ------------SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ------------CCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 1123322 68899999999999999999999885
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.47 E-value=0.011 Score=46.76 Aligned_cols=87 Identities=10% Similarity=0.052 Sum_probs=62.9
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005178 438 AMLNIYGSGGNVDNAIELFEEMSELGVAINVM-GCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLC 516 (710)
Q Consensus 438 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 516 (710)
.....+...|++++|...|+++.+.... +.. .|..+..+|...|++++|+..|++.++.... +...+..
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~-------- 74 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD-SPALQAR-------- 74 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHH--------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHH--------
Confidence 3566788999999999999999886433 567 8999999999999999999999999975432 2222211
Q ss_pred CChHHHHHHHHHHHHhCC
Q 005178 517 ETSEDVGKVITCLQQANP 534 (710)
Q Consensus 517 g~~~~a~~~~~~~~~~~p 534 (710)
+.+.++...|++....+|
T Consensus 75 ~~~~~a~~~~~~~~~~~p 92 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQL 92 (99)
T ss_dssp HHHHHHHHHHCCTTHHHH
T ss_pred HHHHHHHHHHHHHhccCc
Confidence 334556666655544444
No 219
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.46 E-value=0.024 Score=45.69 Aligned_cols=78 Identities=8% Similarity=-0.085 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHH
Q 005178 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRG------VKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFL 540 (710)
Q Consensus 467 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 540 (710)
+..-+..|...+.+.|+++.|+..|+..++.- -.+...++..|..+|.+.|++++|..+++++.+++|++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 34445566667777777777777777766421 123456788888888999999999999999999999887775
Q ss_pred HHHH
Q 005178 541 NLIE 544 (710)
Q Consensus 541 ~~L~ 544 (710)
..+.
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 5544
No 220
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.08 E-value=0.05 Score=56.63 Aligned_cols=89 Identities=12% Similarity=0.009 Sum_probs=46.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC---CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----C-CCC-CHHHHH
Q 005178 301 MFGESGDYDGIRYVLQEMKSLG---VQP----NLVVYNTLLEAMGKAGKPGLARSLFDEMVES-----G-LTP-DEKTLT 366 (710)
Q Consensus 301 ~~~~~g~~~~A~~~~~~m~~~g---~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p-~~~~~~ 366 (710)
.+.+.|++++|+.++++..+.. +.+ ...+++.|..+|...|++++|+.+++++++. | ..| ...+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 3445556666666665555421 111 1234555666666666666666666655421 1 011 134556
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 005178 367 ALIKIYGKARWAKDALELWERMR 389 (710)
Q Consensus 367 ~li~~~~~~g~~~~A~~~~~~m~ 389 (710)
.|...|...|++++|+.++++..
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Confidence 66666666666666666666554
No 221
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.89 E-value=0.6 Score=44.67 Aligned_cols=86 Identities=10% Similarity=0.069 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHcCCCcC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCh
Q 005178 449 VDNAIELFEEMSELGVAIN---VMGCTCLIQCLGKA-----RRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSL-CETS 519 (710)
Q Consensus 449 ~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~g~~ 519 (710)
...|..++++.++. .|+ ...|..+...|.+. |+.++|.+.|++.++.+..-+..++......++. .|+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 46777888888874 455 56788888888884 9999999999999884332235666677777777 4889
Q ss_pred HHHHHHHHHHHHhCCcH
Q 005178 520 EDVGKVITCLQQANPKL 536 (710)
Q Consensus 520 ~~a~~~~~~~~~~~p~~ 536 (710)
+++.++++++....|..
T Consensus 257 ~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 257 AGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHHHHcCCCCC
Confidence 99999999999887763
No 222
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.69 E-value=0.084 Score=45.27 Aligned_cols=85 Identities=12% Similarity=0.084 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHcCCCc--CHHHHHHHHHHHHhcCCHHHH
Q 005178 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG---NVDNAIELFEEMSELGVAI--NVMGCTCLIQCLGKARRIDDL 487 (710)
Q Consensus 413 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A 487 (710)
+..+++-|.+....+ .++..+...+..++++.+ ++++++.+|++..+.+ .| +...+-.+.-+|.+.|++++|
T Consensus 14 l~~~~~~y~~e~~~~--~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHccC--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 455666666666655 477777777778888877 5668888888877754 13 345555666777888888888
Q ss_pred HHHHHHHHHCCCCCC
Q 005178 488 VRVFGVSIDRGVKPD 502 (710)
Q Consensus 488 ~~~~~~m~~~~~~p~ 502 (710)
.+.++.+++ +.|+
T Consensus 91 ~~y~~~lL~--ieP~ 103 (152)
T 1pc2_A 91 LKYVRGLLQ--TEPQ 103 (152)
T ss_dssp HHHHHHHHH--HCTT
T ss_pred HHHHHHHHh--cCCC
Confidence 888888887 4554
No 223
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.49 E-value=0.14 Score=48.99 Aligned_cols=93 Identities=15% Similarity=0.192 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHh-----CCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc-CC
Q 005178 413 VEEAERLFEDMKLSDYCKPD---NYSYTAMLNIYGS-----GGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA-RR 483 (710)
Q Consensus 413 ~~~A~~~~~~~~~~~~~~~~---~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~ 483 (710)
...|...+++..+.. |+ ...|..|...|.+ -|+.++|.+.|++.++.+..-+..++..+...++.. |+
T Consensus 179 l~~A~a~lerAleLD---P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACDLW---PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHHC---TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHHhC---CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 456667777776654 33 5577777777777 378888888888888754332467777777777774 78
Q ss_pred HHHHHHHHHHHHHCCCC--CCHHHHHH
Q 005178 484 IDDLVRVFGVSIDRGVK--PDDRLCGC 508 (710)
Q Consensus 484 ~~~A~~~~~~m~~~~~~--p~~~~~~~ 508 (710)
.+++.+.+++.+..... |+....+.
T Consensus 256 ~~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 256 RAGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp HHHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 88888888888876666 66544443
No 224
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.48 E-value=0.072 Score=43.91 Aligned_cols=96 Identities=16% Similarity=0.077 Sum_probs=66.5
Q ss_pred CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChHH
Q 005178 447 GNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD---LVRVFGVSIDRGVKP--DDRLCGCLLSVVSLCETSED 521 (710)
Q Consensus 447 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~g~~~~ 521 (710)
..+..+.+-|.+....|. ++..+-..+..++.+....++ ++.+++.+...+ .| .......|.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 344555556665555444 566776667777887777665 788888776643 23 22344456778889999999
Q ss_pred HHHHHHHHHHhCCcHHHHHHHHH
Q 005178 522 VGKVITCLQQANPKLVAFLNLIE 544 (710)
Q Consensus 522 a~~~~~~~~~~~p~~~~~~~~L~ 544 (710)
|.++++.+.++.|++..+..+..
T Consensus 93 A~~~~~~lL~~eP~n~QA~~Lk~ 115 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQAKELER 115 (126)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHH
Confidence 99999999999998877765543
No 225
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.29 E-value=0.14 Score=39.98 Aligned_cols=65 Identities=12% Similarity=0.017 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005178 431 PDNYSYTAMLNIYGSGGN---VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496 (710)
Q Consensus 431 ~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 496 (710)
.|...+..+..++...++ .++|..++++.++.+.. +......+...+.+.|++++|+..|+++++
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344444444444433322 45555555555553322 344444455555555555555555555554
No 226
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.23 E-value=1.4 Score=38.76 Aligned_cols=45 Identities=13% Similarity=0.270 Sum_probs=22.7
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005178 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284 (710)
Q Consensus 234 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 284 (710)
..|+++.|.++.+.+ .+...|..|.....+.|+++-|++.|.+..
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 445555555554433 144455555555555555555555555443
No 227
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.17 E-value=0.15 Score=39.83 Aligned_cols=67 Identities=9% Similarity=-0.025 Sum_probs=51.1
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 005178 395 MDFILYNTLLNMCADIGL---VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463 (710)
Q Consensus 395 ~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 463 (710)
.|...+..+..++...++ .++|..++++..+.. +.+......+...+.+.|++++|+..|+++.+..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d--p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE--PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 456667777777665544 688888888888876 6778888888888888888888888888888754
No 228
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.02 E-value=0.8 Score=37.81 Aligned_cols=65 Identities=17% Similarity=0.160 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 005178 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465 (710)
Q Consensus 399 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 465 (710)
..+..++.+...|+-++-.+++..+.... +|++.....+..+|.+.|+..+|.+++.++-+.|++
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~n~--~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILKNN--EVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC--C--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhccC--CCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 34445555666666666666666643322 456666666666666666666666666666665554
No 229
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.97 E-value=0.74 Score=40.46 Aligned_cols=44 Identities=16% Similarity=0.092 Sum_probs=22.2
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005178 444 GSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGV 493 (710)
Q Consensus 444 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 493 (710)
...|+++.|.++.+++ -+...|..|.......|+++-|.+.|.+
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 3445555555554443 1444555555555555555555555544
No 230
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.40 E-value=0.34 Score=38.69 Aligned_cols=65 Identities=6% Similarity=-0.085 Sum_probs=43.0
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005178 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELG------VAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496 (710)
Q Consensus 432 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 496 (710)
+..-+..|...+...|++..|...|+.+.+.- -.+....+..+..+|.+.|+++.|+..++++.+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34445566667777777777777777765521 112456677777777777777777777777776
No 231
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.93 E-value=2.3 Score=35.16 Aligned_cols=139 Identities=12% Similarity=0.050 Sum_probs=86.7
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005178 339 KAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAER 418 (710)
Q Consensus 339 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 418 (710)
-.|..++..++..+.... .+..-||.+|--....-+-+-..++++.+-+. .|. ..+|++.....
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHHH
Confidence 356667777777766653 24444554544444444444445555444322 121 23445555444
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005178 419 LFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRG 498 (710)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 498 (710)
.+-.+- .+.......++.....|.-|+-.+++.++.. +.+|+....-.+..+|.+.|+..+|.+++.++-+.|
T Consensus 83 C~~~~n------~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 83 CGVINN------TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHTT------CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHhc------chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 444432 3445556667778888888888888888644 355778888888888999999888888888888888
Q ss_pred CC
Q 005178 499 VK 500 (710)
Q Consensus 499 ~~ 500 (710)
++
T Consensus 156 ~k 157 (172)
T 1wy6_A 156 EK 157 (172)
T ss_dssp CH
T ss_pred hH
Confidence 64
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.83 E-value=0.53 Score=39.82 Aligned_cols=109 Identities=8% Similarity=0.002 Sum_probs=68.9
Q ss_pred CCCHHHHHHHHHHHHhCCCH------HHHHHHHHHHHHcCCCcCH-HHHHHHHH------HHHhcCCHHHHHHHHHHHHH
Q 005178 430 KPDNYSYTAMLNIYGSGGNV------DNAIELFEEMSELGVAINV-MGCTCLIQ------CLGKARRIDDLVRVFGVSID 496 (710)
Q Consensus 430 ~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~~~~p~~-~~~~~li~------~~~~~g~~~~A~~~~~~m~~ 496 (710)
+.|..+|-..+...-+.|+. ++..++|++.... ++|+. ..|...|. .+...++.++|.++|+.++.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 44555666666665555666 6666666666553 33321 11111111 12345788899999998875
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHH
Q 005178 497 RGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFL 540 (710)
Q Consensus 497 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 540 (710)
.+-+- ..+|......-.++|+...|.+++....+..|....++
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 43332 66777777777789999999999999988888765444
No 233
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.47 E-value=13 Score=42.14 Aligned_cols=192 Identities=9% Similarity=-0.043 Sum_probs=96.8
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-------CCCHHHHHHHHHHH
Q 005178 337 MGKAGKPGLARSLFDEMVESGLTPDE--KTLTALIKIYGKARWAKDALELWERMRENKW-------PMDFILYNTLLNMC 407 (710)
Q Consensus 337 ~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-------~~~~~~~~~li~~~ 407 (710)
....|+.++++.+++.....+-..+. ..-..+.-+....|..+++..++.......- .+....-.++.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 44556667777666655432101222 2223333344555655667777766554311 01111222232233
Q ss_pred HHcCC-HHHHHHHHHHHHhCCCCCCCHH--HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCH
Q 005178 408 ADIGL-VEEAERLFEDMKLSDYCKPDNY--SYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484 (710)
Q Consensus 408 ~~~g~-~~~A~~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 484 (710)
+..|. -+++.+.+..+.... ..... .-.+|...|.-.|+-+....++..+.+.. .-+..-+..+.-++...|+.
T Consensus 464 a~~GS~~eev~e~L~~~L~dd--~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYND--SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTC--CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCG
T ss_pred HhcCCCCHHHHHHHHHHHhcC--CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCCh
Confidence 33332 245566666655432 11111 12233444567788887788887776532 11222233344445577888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCChHHHHHHHHHHHHh
Q 005178 485 DDLVRVFGVSIDRGVKPDDRLC--GCLLSVVSLCETSEDVGKVITCLQQA 532 (710)
Q Consensus 485 ~~A~~~~~~m~~~~~~p~~~~~--~~ll~~~~~~g~~~~a~~~~~~~~~~ 532 (710)
+.+..+.+.+... ..|....- .++.-+|+..|+.....+++..+...
T Consensus 541 e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d 589 (963)
T 4ady_A 541 ELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD 589 (963)
T ss_dssp GGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC
Confidence 8888888887753 22222221 23445677888855555577776653
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.41 E-value=0.44 Score=39.25 Aligned_cols=89 Identities=12% Similarity=0.048 Sum_probs=57.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHH---HHHHHHHHHHcCCC-cCHHHHHHHHHHHHhcCCHH
Q 005178 410 IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDN---AIELFEEMSELGVA-INVMGCTCLIQCLGKARRID 485 (710)
Q Consensus 410 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~ 485 (710)
...+..+.+-|......+ .++..+--.+..++.+..+... ++.+++++.+.+.+ -.....-.|.-++.+.|+++
T Consensus 14 ~~~l~~~~~~y~~e~~~~--~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccC--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHH
Confidence 344555666666665555 4677777777777777776555 77777777765311 13344455666788888888
Q ss_pred HHHHHHHHHHHCCCCCC
Q 005178 486 DLVRVFGVSIDRGVKPD 502 (710)
Q Consensus 486 ~A~~~~~~m~~~~~~p~ 502 (710)
+|.+.++.+++ +.|+
T Consensus 92 ~A~~~~~~lL~--~eP~ 106 (126)
T 1nzn_A 92 KALKYVRGLLQ--TEPQ 106 (126)
T ss_dssp HHHHHHHHHHH--HCTT
T ss_pred HHHHHHHHHHH--hCCC
Confidence 88888888877 4554
No 235
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.77 E-value=10 Score=39.23 Aligned_cols=96 Identities=9% Similarity=0.017 Sum_probs=56.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHh---CCCCCCC--HHH
Q 005178 366 TALIKIYGKARWAKDALELWERMREN--KWPMD---FILYNTLLNMCADIGLVEEAERLFEDMKL---SDYCKPD--NYS 435 (710)
Q Consensus 366 ~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~--~~~ 435 (710)
..|...|...|++.+|.+++..+... |.... ...+...+..|...+++..|..++.++.. .....|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 34566666777777777777766421 11111 23455566677777777777777776532 1111222 234
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHH
Q 005178 436 YTAMLNIYGSGGNVDNAIELFEEMSE 461 (710)
Q Consensus 436 ~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (710)
+..++..+...+++.+|.+.|.++.+
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 55666667777777777777776654
No 236
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.63 E-value=2.8 Score=35.46 Aligned_cols=102 Identities=12% Similarity=0.091 Sum_probs=56.8
Q ss_pred CCcHHHHHHHHHHHHccCCh------HHHHHHHHHHHHCCCCCCH----HHHHHH-HH--HHHHcCCHHHHHHHHHHHHH
Q 005178 184 PMETIFYNVTMKSLRFGRQF------QLIEQLANEMVSNEIELDN----ITYSTI-IT--CAKRCNLFDEAIEWFERMYK 250 (710)
Q Consensus 184 ~~~~~~~~~li~~~~~~g~~------~~A~~l~~~m~~~g~~p~~----~~~~~l-i~--~~~~~g~~~~A~~~~~~m~~ 250 (710)
+.|..+|-..+..+-+.|++ ++..++|++.... ++|+. ..|-.+ |. .+...++.++|.++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45667777777777777777 7777777777653 34432 111111 11 12233566666666666655
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 005178 251 TGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287 (710)
Q Consensus 251 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 287 (710)
.+-.- ...|......-.+.|++..|.+++.+.+..+
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 42222 5555555555566666666666666666554
No 237
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=92.03 E-value=0.51 Score=35.68 Aligned_cols=75 Identities=20% Similarity=0.210 Sum_probs=46.6
Q ss_pred hcccccChHHHHHHHHHHHHHHHHHHHhccCCCCeeEEEeccCcccchh--hHHHHHHHHhhhcCCCccccCCCCceEEe
Q 005178 615 LDVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQLFLAETGTGTHKFSQ--GLATAFASHVNKLAAPFRQSEGKAGCFVA 692 (710)
Q Consensus 615 ~~~~~~~~G~~~~Al~~~~~~~~~~~~~~~~~p~~~~i~~~~~~~~~~~--~~~~~~~~~l~~l~~~~~~~~~~~g~~~~ 692 (710)
.+++++....|..+++.|++.......... --.+..|.||.|.|+..- -++..|...|++-.-.|.+ .|.|++..
T Consensus 3 lDLHGl~v~eA~~~l~~~l~~~~~~~~~~~-g~~~v~II~GkG~hS~~g~~~Lk~~V~~~L~~~~~~~~e--~n~G~l~V 79 (82)
T 3fau_A 3 LDLHGLHVDEALEHLMRVLEKKTEEFKQNG-GKPYLSVITGRGNHSQGGVARIKPAVIKYLISHSFRFSE--IKPGCLKV 79 (82)
T ss_dssp EECTTSCHHHHHHHHHHHHHHHHHHHHHHC-CCCEEEEECCC---------CHHHHHHHHHHHTTCCEEE--EETTEEEE
T ss_pred EECCCCcHHHHHHHHHHHHHHHHHHhhccC-CceEEEEEECCCCCCCCCcchHHHHHHHHHHhCCCceee--CCCEEEEE
Confidence 467888777777777777765433222111 123688999999998642 2789999999987766654 47798764
No 238
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=91.83 E-value=4.1 Score=34.15 Aligned_cols=80 Identities=8% Similarity=-0.122 Sum_probs=59.4
Q ss_pred CcCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHH
Q 005178 465 AINVMGCTCLIQCLGKARRI---DDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLN 541 (710)
Q Consensus 465 ~p~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 541 (710)
.|+..+--.+..++.+.... .+++.+++.+...+..-.......|.-++.+.|++++|.++.+.+.++.|++..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 56777777777788887764 468888888876432212334556777899999999999999999999999887765
Q ss_pred HHH
Q 005178 542 LIE 544 (710)
Q Consensus 542 ~L~ 544 (710)
+..
T Consensus 116 Lk~ 118 (144)
T 1y8m_A 116 LKS 118 (144)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 239
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.32 E-value=2.2 Score=35.30 Aligned_cols=82 Identities=9% Similarity=-0.100 Sum_probs=59.4
Q ss_pred CCCcCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHH
Q 005178 463 GVAINVMGCTCLIQCLGKARRI---DDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAF 539 (710)
Q Consensus 463 ~~~p~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 539 (710)
+-.|+..+--.+..++.+.... .+++.+++++...+..-....+..|.-++.+.|++++|.++.+.+.++.|++..+
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 3456667666677777776654 4678888888765421123455667778889999999999999999999998877
Q ss_pred HHHHH
Q 005178 540 LNLIE 544 (710)
Q Consensus 540 ~~~L~ 544 (710)
..+..
T Consensus 115 ~~Lk~ 119 (134)
T 3o48_A 115 GALKS 119 (134)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65543
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.01 E-value=1.6 Score=48.21 Aligned_cols=127 Identities=10% Similarity=0.113 Sum_probs=80.1
Q ss_pred HHHHHHHHHHccCC-hHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHHcC-CHHHHHHHHHHHHHc------CCCC-CH
Q 005178 189 FYNVTMKSLRFGRQ-FQLIEQLANEMVSNEIELDNITY--STIITCAKRCN-LFDEAIEWFERMYKT------GLMP-DE 257 (710)
Q Consensus 189 ~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~~~--~~li~~~~~~g-~~~~A~~~~~~m~~~------g~~~-~~ 257 (710)
.-..++..+...|+ .+.|..+|+++.... |....+ ..+|..+...+ .--+|++++.+..+. ...+ +.
T Consensus 250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~ 327 (754)
T 4gns_B 250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDA 327 (754)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccc
Confidence 34556666666666 578999999988763 333222 23333333332 223566666555431 1111 11
Q ss_pred ----------HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005178 258 ----------VTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEM 318 (710)
Q Consensus 258 ----------~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 318 (710)
.....-...|...|+++.|+++-++....- +-+-.+|..|..+|...|+++.|+-.++.+
T Consensus 328 ~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 328 DSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 122333455677899999999999988752 445778999999999999999999888876
No 241
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=88.74 E-value=2.5e-05 Score=79.15 Aligned_cols=261 Identities=10% Similarity=0.013 Sum_probs=138.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005178 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371 (710)
Q Consensus 292 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 371 (710)
+.+|..|..++.+.+++.+|++.|-+. -|+..|..+|.+..+.|.+++-..++...++.. .+...=+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHH
Confidence 345666666666666655555544221 133445566666666666666666655544432 222334456666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHH
Q 005178 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDN 451 (710)
Q Consensus 372 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 451 (710)
|++.+++.+-.+++ -.||..-...+.+-|...|.++.|.-+|..+.. |..|...+.+.|++..
T Consensus 126 yAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN----------~akLAstLV~L~~yq~ 188 (624)
T 3lvg_A 126 LAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN----------FGRLASTLVHLGEYQA 188 (624)
T ss_dssp HHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC----------CTTTSSSSSSCSGGGS
T ss_pred HHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc----------HHHHHHHHHHHHHHHH
Confidence 66666654432221 123444445566666666666666655555432 2223334455555554
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005178 452 AIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ 531 (710)
Q Consensus 452 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 531 (710)
|.+.-++ .-+..||-.+-.+|...+.+.-|-..--.++- .|| ....++..|...|.+++.+.+++...+
T Consensus 189 AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglg 257 (624)
T 3lvg_A 189 AVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALG 257 (624)
T ss_dssp STTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTT
T ss_pred HHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhC
Confidence 4432221 13566777777777777777666544433332 122 123456667777888888888877777
Q ss_pred hCCcHHHHHHHHHhhcCCcccHHHHHHHHHHhccCCCC----------hhhHHHHHHHHHhCCCHHHHH
Q 005178 532 ANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDAR----------RPFCNCLIDICRNRNLNERAH 590 (710)
Q Consensus 532 ~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~ 590 (710)
+..-+..+..-||-.+++- ..+...+.++..-...+ ...|.-|+-.|.+...++.|.
T Consensus 258 lErAHmGmFTELaILYsKY--~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 258 LERAHMGMFTELAILYSKF--KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp STTCCHHHHHHHHHHHHSS--CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred CCchhHHHHHHHHHHHHhc--CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 6666666666565544432 11222222222211111 125666777777777777653
No 242
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=86.81 E-value=47 Score=37.62 Aligned_cols=261 Identities=10% Similarity=-0.060 Sum_probs=127.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--C-----CCHHHHHHHHHHH
Q 005178 302 FGESGDYDGIRYVLQEMKSLGVQPNLV--VYNTLLEAMGKAGKPGLARSLFDEMVESGL--T-----PDEKTLTALIKIY 372 (710)
Q Consensus 302 ~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~-----p~~~~~~~li~~~ 372 (710)
....|+.++++.+++.....+-..+.. .-..+.-+....|..+++..++...+...- . +....-.++.-+.
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 445666677766666554321012333 223344445556666678887777664310 0 1111222232233
Q ss_pred HhcCC-HHHHHHHHHHHHhCCCCCCHHH----HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCC
Q 005178 373 GKARW-AKDALELWERMRENKWPMDFIL----YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447 (710)
Q Consensus 373 ~~~g~-~~~A~~~~~~m~~~~~~~~~~~----~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 447 (710)
+-.|. -+++.+.+..+.... +... -.+|...++-.|+-+....++..+.+.. ..+..-+..+.-++...|
T Consensus 464 a~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~--~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ--HGNITRGLAVGLALINYG 538 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHTTT
T ss_pred HhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC--cHHHHHHHHHHHHhhhCC
Confidence 32332 245555555555431 2221 1123333456678788888888776532 122222333344455788
Q ss_pred CHHHHHHHHHHHHHcCCCcCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 005178 448 NVDNAIELFEEMSELGVAINVMGC--TCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKV 525 (710)
Q Consensus 448 ~~~~A~~~~~~m~~~~~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 525 (710)
+.+.+..+.+.+... ..|....- .++.-+|+..|+.....+++..+.... ..+..-...+.-++...|+.+.+.++
T Consensus 539 ~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 539 RQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp CGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred ChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 888888888887763 11222211 234456777888776666888887532 22233222333344456665556666
Q ss_pred HHHHHH-hCCcHH-HHHHHHHhhcCCcccHHHHHHHHHHhccCCCChh
Q 005178 526 ITCLQQ-ANPKLV-AFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRP 571 (710)
Q Consensus 526 ~~~~~~-~~p~~~-~~~~~L~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 571 (710)
++.+.+ .+|..- .+.-.||.... |.-..++...+..+..++|..
T Consensus 617 v~~L~~~~d~~VR~gAalALGli~a--Gn~~~~aid~L~~L~~D~d~~ 662 (963)
T 4ady_A 617 VQLLSKSHNAHVRCGTAFALGIACA--GKGLQSAIDVLDPLTKDPVDF 662 (963)
T ss_dssp TTTGGGCSCHHHHHHHHHHHHHHTS--SSCCHHHHHHHHHHHTCSSHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhcc--CCCcHHHHHHHHHHccCCCHH
Confidence 554433 222211 12233343333 222344444555554444444
No 243
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.12 E-value=34 Score=35.31 Aligned_cols=93 Identities=9% Similarity=0.014 Sum_probs=42.9
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHc--CCCcC---HHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCCH--HH
Q 005178 437 TAMLNIYGSGGNVDNAIELFEEMSEL--GVAIN---VMGCTCLIQCLGKARRIDDLVRVFGVSI----DRGVKPDD--RL 505 (710)
Q Consensus 437 ~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~p~~--~~ 505 (710)
..|...|...|++.+|..++.++... |.... ...|...++.|...+++..|..+++++. .....|+. ..
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 34445555555555555555554321 11111 2334444555555555555555555542 11111111 13
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH
Q 005178 506 CGCLLSVVSLCETSEDVGKVITCL 529 (710)
Q Consensus 506 ~~~ll~~~~~~g~~~~a~~~~~~~ 529 (710)
+.+.+..+.+.+++.+|-+.|.++
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHH
Confidence 444555555556665555555444
No 244
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=86.04 E-value=19 Score=33.90 Aligned_cols=117 Identities=10% Similarity=0.053 Sum_probs=78.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHH
Q 005178 476 QCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKE 555 (710)
Q Consensus 476 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~ 555 (710)
....+.|.+++|+.....-++.... |...-..|+..++-.|+++.|.+-++.+.+++|+......++.... ..+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI-----~aE 78 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLV-----KAA 78 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH-----HHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHH-----HHH
Confidence 3456789999999999888876433 6666678888999999999999999999999999876655543210 111
Q ss_pred HHHH-HHHh--ccCCC-Chh-hHHHHHHHHH--hCCCHHHHHHHHHHHHH
Q 005178 556 EFRN-VIKD--TEVDA-RRP-FCNCLIDICR--NRNLNERAHELLYLGTL 598 (710)
Q Consensus 556 ~a~~-~~~~--~~~~~-~~~-~~~~l~~~~~--~~g~~~~A~~~~~~~~~ 598 (710)
..+. ++.. .+.-+ .+. -...|+.++. ..|+.++|.++-+++.+
T Consensus 79 ~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 79 QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 1222 2221 12111 122 3355666655 56999999988887753
No 245
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=85.81 E-value=3.2 Score=42.27 Aligned_cols=67 Identities=15% Similarity=0.122 Sum_probs=36.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 005178 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS-----LGVQPNLVV 329 (710)
Q Consensus 262 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~ 329 (710)
.++..+...|++++|+..+..+.... +.+...|..+|.+|.+.|+..+|++.|+.+.+ .|+.|...+
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34455555566666665555555432 34555566666666666666666666555433 255555443
No 246
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=85.60 E-value=3.7 Score=41.71 Aligned_cols=56 Identities=9% Similarity=0.116 Sum_probs=30.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005178 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460 (710)
Q Consensus 403 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 460 (710)
++..+...|+.++|...+..+.... +-+...|..+|.+|.+.|+..+|++.|+++.
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~--P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEH--PYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555556665555555555444 4455555555555555555555555555543
No 247
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=85.58 E-value=30 Score=40.81 Aligned_cols=147 Identities=10% Similarity=-0.067 Sum_probs=94.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC----C--------------
Q 005178 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD----Y-------------- 428 (710)
Q Consensus 367 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~-------------- 428 (710)
.++..+.+.+..+.+.++..-. +.+......+..+|...|++++|.+.|.+....- .
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 3455566666666665544332 2255555566778888999999999997653210 0
Q ss_pred ---CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 005178 429 ---CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN----VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501 (710)
Q Consensus 429 ---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 501 (710)
...-..-|..++..+.+.|.++.+.++-..+++....-+ ...|..+..++...|++++|...+-.+.+...+
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r- 970 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK- 970 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC-
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH-
Confidence 001123366777788888888888888777766422222 125788888888889999888888777765443
Q ss_pred CHHHHHHHHHHHHhcCChH
Q 005178 502 DDRLCGCLLSVVSLCETSE 520 (710)
Q Consensus 502 ~~~~~~~ll~~~~~~g~~~ 520 (710)
......|+..++..|..+
T Consensus 971 -~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 971 -KSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp -HHHHHHHHHHHHHHCCHH
T ss_pred -HHHHHHHHHHHHhCCChh
Confidence 455666777677666643
No 248
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=85.48 E-value=3.1 Score=46.01 Aligned_cols=30 Identities=17% Similarity=-0.185 Sum_probs=25.4
Q ss_pred ChhhHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 005178 569 RRPFCNCLIDICRNRNLNERAHELLYLGTL 598 (710)
Q Consensus 569 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 598 (710)
...-|..|+....+.+++++|.+.|...+.
T Consensus 612 s~lEWEiLGlla~RL~h~~EA~~a~~~~l~ 641 (754)
T 4gns_B 612 SGLEWELLGLIMLRTWHWEDAVACLRTSIV 641 (754)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 334699999999999999999999998763
No 249
>2vkc_A NEDD4-binding protein 2; human BCL3 binding protein, alternative splicing, homologous recombination, mismatch repair, small MUTS related; NMR {Homo sapiens}
Probab=84.37 E-value=5.4 Score=33.36 Aligned_cols=78 Identities=19% Similarity=0.205 Sum_probs=54.1
Q ss_pred cchhcccccChHHHHHHHHHHHHHHHHHHHhccCCCCeeEEEeccCcccch--hhHHHHHHHHhhhcCCCccccCCCCce
Q 005178 612 EWSLDVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQLFLAETGTGTHKFS--QGLATAFASHVNKLAAPFRQSEGKAGC 689 (710)
Q Consensus 612 ~w~~~~~~~~~G~~~~Al~~~~~~~~~~~~~~~~~p~~~~i~~~~~~~~~~--~~~~~~~~~~l~~l~~~~~~~~~~~g~ 689 (710)
...++++++....+..+++.|++.......... -..++.|+||.|.|+.. .-++..|...|++..-.|.+. +.|.
T Consensus 53 ~~~LDLHGl~v~EA~~~L~~fL~~a~~~~~~~~-g~~~v~IIhGkG~hS~~g~~~Lk~~V~~~L~~~~~~~~e~--g~G~ 129 (135)
T 2vkc_A 53 QNVLDLHGLHVDEALEHLMRVLEKKTEEFKQNG-GKPYLSVITGRGNHSQGGVARIKPAVIKYLISHSFRFSEI--KPGC 129 (135)
T ss_dssp GTEEECTTCCHHHHHHHHHHHHHHHHHHHHHTC-CCSEEEEECCSCSSSCCSCCTHHHHHHHHHHTTTCEEEEC--STTE
T ss_pred CceEEeCCCcHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEEECCCcCCCCCCchHHHHHHHHHhcCCCceeeC--CCCe
Confidence 345689999888888888888776543222111 12368899999999865 236889999999877666443 6677
Q ss_pred EEe
Q 005178 690 FVA 692 (710)
Q Consensus 690 ~~~ 692 (710)
++.
T Consensus 130 ~~V 132 (135)
T 2vkc_A 130 LKV 132 (135)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 250
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=83.74 E-value=33 Score=33.23 Aligned_cols=25 Identities=16% Similarity=0.013 Sum_probs=14.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHH
Q 005178 326 NLVVYNTLLEAMGKAGKPGLARSLF 350 (710)
Q Consensus 326 ~~~~~~~li~~~~~~g~~~~A~~~~ 350 (710)
++.....+...|.+.|++.+|...|
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 4445555666666666666655544
No 251
>2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1
Probab=83.34 E-value=6.6 Score=30.47 Aligned_cols=75 Identities=21% Similarity=0.203 Sum_probs=54.2
Q ss_pred chhcccccChHHHHHHHHHHHHHHHHHHH--hccCCCCeeEEEeccCcccchh--hHHHHHHHHhhhcCCCccccCCCCc
Q 005178 613 WSLDVRSLSVGAAQTALEEWMWTLAKIVL--REEVLPQLFLAETGTGTHKFSQ--GLATAFASHVNKLAAPFRQSEGKAG 688 (710)
Q Consensus 613 w~~~~~~~~~G~~~~Al~~~~~~~~~~~~--~~~~~p~~~~i~~~~~~~~~~~--~~~~~~~~~l~~l~~~~~~~~~~~g 688 (710)
...+++++....|..+++.|++....... .| -.++.|++|.|.|+... -++..|...|++....|. ..+.|
T Consensus 9 ~~lDLHGl~v~eA~~~L~~~L~~~~~~~~~~~g---~~~v~IIhGkG~hS~~g~~~Lk~~V~~~L~~~~~~~~--egg~G 83 (96)
T 2d9i_A 9 NVLDLHGLHVDEALEHLMRVLEKKTEEFKQNGG---KPYLSVITGRGNHSQGGVARIKPAVIKYLISHSFRFS--EIKPG 83 (96)
T ss_dssp CEEECTTSCHHHHHHHHHHHHHHHHHHHHHTTC---CSEEEEECCCSGGGTTCTTCHHHHHHHHHHHTTCCEE--CCSTT
T ss_pred CeEECCCCCHHHHHHHHHHHHHHHHHHHHhhCC---CeEEEEEECcCCCCCCCcchHHHHHHHHHhhCCCccc--cCCCc
Confidence 34679999888888888888876543222 23 23689999999998652 368899999999877664 34678
Q ss_pred eEEe
Q 005178 689 CFVA 692 (710)
Q Consensus 689 ~~~~ 692 (710)
.++.
T Consensus 84 a~~V 87 (96)
T 2d9i_A 84 CLKV 87 (96)
T ss_dssp CEEE
T ss_pred EEEE
Confidence 7664
No 252
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=81.73 E-value=6.7 Score=30.49 Aligned_cols=63 Identities=14% Similarity=0.184 Sum_probs=37.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005178 342 KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405 (710)
Q Consensus 342 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 405 (710)
+.-+..+-++.+....+.|+.....+.+.+|.+.+++..|.++|+-++.+ +.....+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 34455556666666666677777777777777777777777777666544 2222334544443
No 253
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=79.79 E-value=21 Score=29.45 Aligned_cols=72 Identities=7% Similarity=-0.100 Sum_probs=51.1
Q ss_pred CCCHHHHHHHHHHHHhCCCH---HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 005178 430 KPDNYSYTAMLNIYGSGGNV---DNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503 (710)
Q Consensus 430 ~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 503 (710)
.|+..+--.+..++.+..+. .+++.+++++.+.+..-....+--|.-++.+.|++++|.++.+.+++ +.|+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N 111 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 111 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCC
Confidence 57777766677777776654 46888888887755322455666677788888999999988888877 45553
No 254
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=79.47 E-value=47 Score=32.15 Aligned_cols=80 Identities=19% Similarity=0.069 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHcCCCcCHHHHH
Q 005178 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG---GNVDNAIELFEEMSELGVAINVMGCT 472 (710)
Q Consensus 396 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~~~~p~~~~~~ 472 (710)
|......+...|.+.|++.+|+..|-.-. ..+...+..++.-+... |...++--++-++
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i~~~-----~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~Ra------------- 194 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFMLGT-----HDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRL------------- 194 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTSC-----HHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH-------------
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHhCC-----CccHHHHHHHHHHHHHhcCCCCcchHHHHHHHH-------------
Confidence 66677777777788888877777664111 11344555444443333 4333322222221
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 005178 473 CLIQCLGKARRIDDLVRVFGVSI 495 (710)
Q Consensus 473 ~li~~~~~~g~~~~A~~~~~~m~ 495 (710)
+-.|.-.|+...|..+|+...
T Consensus 195 --VL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 195 --VFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp --HHHHHHTTBHHHHHHHHHHHH
T ss_pred --HHHHHHhcCHHHHHHHHHHHH
Confidence 223556677777777777654
No 255
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=78.12 E-value=53 Score=32.05 Aligned_cols=80 Identities=10% Similarity=0.014 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005178 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405 (710)
Q Consensus 326 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 405 (710)
+......+...|.+.+++.+|...|- .|-.++...|..++.-+...+... ..|.+.-.+++
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~~~--------------e~dlfiaRaVL- 195 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQDESH--------------TAPLYCARAVL- 195 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTSCGG--------------GHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhcCCc--------------cHHHHHHHHHH-
Confidence 44555566667777777777666652 122233345544444443333211 11223333333
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 005178 406 MCADIGLVEEAERLFEDMK 424 (710)
Q Consensus 406 ~~~~~g~~~~A~~~~~~~~ 424 (710)
.|...+++..|..+++...
T Consensus 196 ~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 196 PYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHH
Confidence 2445566666666555443
No 256
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=76.59 E-value=66 Score=32.33 Aligned_cols=92 Identities=5% Similarity=-0.100 Sum_probs=55.3
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHc--CCC---cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHHHHH---
Q 005178 438 AMLNIYGSGGNVDNAIELFEEMSEL--GVA---INVMGCTCLIQCLGKARRIDDLVRVFGVSID--RGVKPDDRLCG--- 507 (710)
Q Consensus 438 ~li~~~~~~g~~~~A~~~~~~m~~~--~~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~p~~~~~~--- 507 (710)
.++..|...|++.+|..++.++.+. ... --...|..-+..|...|++..+...+..... ..+.+++.+..
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 5677777788888887777777652 111 1134566666777788888888877776652 12323433221
Q ss_pred -HHHHHHH-hcCChHHHHHHHHHH
Q 005178 508 -CLLSVVS-LCETSEDVGKVITCL 529 (710)
Q Consensus 508 -~ll~~~~-~~g~~~~a~~~~~~~ 529 (710)
+-...+. ..+++.+|...|-+.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHH
Confidence 2223344 678888887766554
No 257
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=76.26 E-value=39 Score=39.75 Aligned_cols=146 Identities=16% Similarity=0.046 Sum_probs=100.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-------------------
Q 005178 333 LLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKW------------------- 393 (710)
Q Consensus 333 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~------------------- 393 (710)
++..+.+.+.++.+.++.... +.+....-.+..+|...|++++|.+.|.+.-. |+
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccccc
Confidence 455566667776666544332 33444445567788899999999999976521 11
Q ss_pred ----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 005178 394 ----PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDN----YSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465 (710)
Q Consensus 394 ----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 465 (710)
..-..-|..++..+.+.+.++.+.++-....+... +.+. ..|..+..++...|++++|...+-.+.....
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~-~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~- 969 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKE-TDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL- 969 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCC-SCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS-
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc-CCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH-
Confidence 01123467788889999999999988877766442 2222 2588899999999999999999988876443
Q ss_pred cCHHHHHHHHHHHHhcCCHHHH
Q 005178 466 INVMGCTCLIQCLGKARRIDDL 487 (710)
Q Consensus 466 p~~~~~~~li~~~~~~g~~~~A 487 (710)
-......|+..++..|+.+.-
T Consensus 970 -r~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 970 -KKSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp -CHHHHHHHHHHHHHHCCHHHH
T ss_pred -HHHHHHHHHHHHHhCCChhhh
Confidence 356677788878877776543
No 258
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=76.24 E-value=25 Score=30.34 Aligned_cols=26 Identities=8% Similarity=-0.070 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005178 435 SYTAMLNIYGSGGNVDNAIELFEEMS 460 (710)
Q Consensus 435 ~~~~li~~~~~~g~~~~A~~~~~~m~ 460 (710)
++..+.+++...|++..|...|++.+
T Consensus 65 ~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 65 LLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 34444555555555555555555543
No 259
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=75.75 E-value=23 Score=27.55 Aligned_cols=63 Identities=14% Similarity=0.125 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 005178 377 WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441 (710)
Q Consensus 377 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~ 441 (710)
+.-+..+-++.+....+.|++.+..+.+.+|-+.+++..|.++|+-++..- .....+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~--~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCchhhHHHHHH
Confidence 455677777777778888888888888999988999999999888887654 233445655553
No 260
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=74.36 E-value=13 Score=30.68 Aligned_cols=62 Identities=15% Similarity=0.185 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005178 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405 (710)
Q Consensus 343 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 405 (710)
..+..+-++.+...++.|+.....+.+.+|.+.+++..|.++|+-++.+ +.+...+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 3445555566666666677777777777777777777777777766654 2223334554443
No 261
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=72.68 E-value=0.0029 Score=64.48 Aligned_cols=223 Identities=13% Similarity=0.135 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005178 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266 (710)
Q Consensus 187 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 266 (710)
..+|..+..+....+...+|++-| ++. -|...|..+|.++.+.|.+++-+..+....+.. .+..+=+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsy---IkA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSY---IKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSS---CCC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHH---HhC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHH
Confidence 345888999998888888887755 222 266778889999999999999888886665542 244555778888
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 005178 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLA 346 (710)
Q Consensus 267 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 346 (710)
|++.++..+-++++ . .||..-...+.+-|...|.++.|.-+|..+... .-|...+.+.|++..|
T Consensus 126 yAk~~rL~elEefl----~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~---------akLAstLV~L~~yq~A 189 (624)
T 3lvg_A 126 LAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNF---------GRLASTLVHLGEYQAA 189 (624)
T ss_dssp HHTSCSSSTTTSTT----S---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCC---------TTTSSSSSSCSGGGSS
T ss_pred HHhhCcHHHHHHHH----c---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccH---------HHHHHHHHHHHHHHHH
Confidence 99988865533322 2 367777778888888888888888888766432 1222333333443333
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005178 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426 (710)
Q Consensus 347 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 426 (710)
.+.-++ .-+..||..+-.+|...+.+.-|.-.--.++-.. | -...++.-|-..|.+++-+.+++.-...
T Consensus 190 VdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvha---d--eL~elv~~YE~~G~f~ELIsLlEaglgl 258 (624)
T 3lvg_A 190 VDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA---D--ELEELINYYQDRGYFEELITMLEAALGL 258 (624)
T ss_dssp TTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS---S--CCSGGGSSSSTTCCCTTSTTTHHHHTTS
T ss_pred HHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhcccH---H--HHHHHHHHHHhCCCHHHHHHHHHHHhCC
Confidence 222111 1233455555555555554443332222222110 0 0112334444555555555555554432
Q ss_pred CCCCCCHHHHHHHHHHHHhC
Q 005178 427 DYCKPDNYSYTAMLNIYGSG 446 (710)
Q Consensus 427 ~~~~~~~~~~~~li~~~~~~ 446 (710)
. ......|+-|.-.|++-
T Consensus 259 E--rAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 259 E--RAHMGMFTELAILYSKF 276 (624)
T ss_dssp T--TCCHHHHHHHHHHHHSS
T ss_pred C--chhHHHHHHHHHHHHhc
Confidence 2 34455555555555543
No 262
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=70.70 E-value=21 Score=30.74 Aligned_cols=56 Identities=4% Similarity=-0.021 Sum_probs=27.0
Q ss_pred HHHHHccCChHHHHHHHHHHHHCC-CCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005178 194 MKSLRFGRQFQLIEQLANEMVSNE-IELDN-------ITYSTIITCAKRCNLFDEAIEWFERMY 249 (710)
Q Consensus 194 i~~~~~~g~~~~A~~l~~~m~~~g-~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~ 249 (710)
++.+...|.++.|+-+.+.+.... ..++. .++..+..++...+++.+|...|++.+
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 344455555665555554433210 11221 233344445566666666666666654
No 263
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=70.29 E-value=41 Score=30.04 Aligned_cols=57 Identities=12% Similarity=0.167 Sum_probs=40.6
Q ss_pred CCCHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 005178 446 GGNVDNAIELFEEMSELGVAIN-VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502 (710)
Q Consensus 446 ~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 502 (710)
+++..++..+|..|...|+.-. ...|......+...|++.+|..+|+.-++.+-.|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 4456677778888777766544 44566677777777888888888887777777774
No 264
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=70.27 E-value=47 Score=27.76 Aligned_cols=67 Identities=7% Similarity=-0.121 Sum_probs=39.2
Q ss_pred CCCHHHHHHHHHHHHhCCCH---HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005178 430 KPDNYSYTAMLNIYGSGGNV---DNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496 (710)
Q Consensus 430 ~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 496 (710)
.++..+--.+..++.+..+. .+++.+++++...+..-.....-.|.-++.+.|++++|.++.+.+++
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 35555555555566555543 35666666666543322334444455667777777777777777766
No 265
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=69.21 E-value=39 Score=30.16 Aligned_cols=57 Identities=16% Similarity=0.019 Sum_probs=46.9
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc
Q 005178 410 IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466 (710)
Q Consensus 410 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 466 (710)
.++..++.++|..|...++...-...|......+...|++.+|..+|+.-++.+-+|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 445778888999888888766677788888888888999999999999888877776
No 266
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=67.06 E-value=98 Score=30.21 Aligned_cols=80 Identities=11% Similarity=0.021 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 005178 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLI 475 (710)
Q Consensus 396 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 475 (710)
|......+...|.+.+++.+|+..|- . +. .+....|..++.-+...+...++ +...-.+ +
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~-~~s~~~~a~mL~ew~~~~~~~e~--------------dlfiaRa-V 194 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHLV--L--GT-KESPEVLARMEYEWYKQDESHTA--------------PLYCARA-V 194 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHT--T--SC-TTHHHHHHHHHHHHHHTSCGGGH--------------HHHHHHH-H
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHH--h--cC-CchHHHHHHHHHHHHHhcCCccH--------------HHHHHHH-H
Confidence 66677777888888888888877763 1 21 23335665555444333322111 1111122 2
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 005178 476 QCLGKARRIDDLVRVFGVSI 495 (710)
Q Consensus 476 ~~~~~~g~~~~A~~~~~~m~ 495 (710)
-.|.-.++...|..+|+...
T Consensus 195 L~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 195 LPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHH
Confidence 23556677777777665554
No 267
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=66.51 E-value=41 Score=27.75 Aligned_cols=63 Identities=14% Similarity=0.125 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 005178 377 WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441 (710)
Q Consensus 377 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~ 441 (710)
|.-+..+-++.+....+.|++.+..+.+.+|-+.+++..|.++|+-++.+- .+...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHHH
Confidence 445566667777777888888888888899888899999999888887654 234445655553
No 268
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=65.66 E-value=45 Score=25.83 Aligned_cols=80 Identities=13% Similarity=0.152 Sum_probs=46.1
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005178 164 LKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243 (710)
Q Consensus 164 l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 243 (710)
....++|..+-+|+..... ...+--+-+..+...|++++|..+.+.+. .||...|-.+-. .+.|..+++..
T Consensus 20 ~H~HqEA~tIAdwL~~~~~---~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~ 90 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE---EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALES 90 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHH
Confidence 3356777777777766531 22222223334566777777776655443 467666655533 35666666666
Q ss_pred HHHHHHHcC
Q 005178 244 WFERMYKTG 252 (710)
Q Consensus 244 ~~~~m~~~g 252 (710)
.+.++...|
T Consensus 91 rL~~la~sg 99 (116)
T 2p58_C 91 RLNRLARSQ 99 (116)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHHhCC
Confidence 666665554
No 269
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=63.23 E-value=50 Score=25.60 Aligned_cols=77 Identities=13% Similarity=0.072 Sum_probs=43.4
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005178 201 RQFQLIEQLANEMVSNEIELDNITYSTIIT--CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS 278 (710)
Q Consensus 201 g~~~~A~~l~~~m~~~g~~p~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 278 (710)
...++|..+-+-+...+ + .-...+|+ .+...|++++|..+.+.+. .||...|-+|.. .+.|..+++..
T Consensus 21 H~HqEA~tIAdwL~~~~---~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~ 90 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKG---E-EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALES 90 (116)
T ss_dssp TCHHHHHHHHHHHHHTT---C-HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCC---c-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHH
Confidence 45566666666655543 2 22223333 5566677777776654432 566666666543 35666666666
Q ss_pred HHHHHHhCC
Q 005178 279 LYERGVASG 287 (710)
Q Consensus 279 ~~~~~~~~g 287 (710)
-+.++..+|
T Consensus 91 rL~~la~sg 99 (116)
T 2p58_C 91 RLNRLARSQ 99 (116)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHHhCC
Confidence 666665554
No 270
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=62.67 E-value=44 Score=25.86 Aligned_cols=80 Identities=8% Similarity=0.001 Sum_probs=46.2
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005178 164 LKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243 (710)
Q Consensus 164 l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 243 (710)
....++|..+-+|+..... ...+--+-+..+...|++++|..+.+.+. .||...|-.+- -.+.|..+++..
T Consensus 19 ~H~HqEA~tIAdwL~~~~~---~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~ 89 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ---DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALC--EWHLGLGAALDR 89 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHH--HHHTTCHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHH
Confidence 3356777777777766531 22222223334566777777776654433 46666665553 345677777776
Q ss_pred HHHHHHHcC
Q 005178 244 WFERMYKTG 252 (710)
Q Consensus 244 ~~~~m~~~g 252 (710)
.+.++...|
T Consensus 90 rL~~la~sg 98 (115)
T 2uwj_G 90 RLAGLGGSS 98 (115)
T ss_dssp HHHHHHTCS
T ss_pred HHHHHHhCC
Confidence 666665554
No 271
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=62.25 E-value=55 Score=33.50 Aligned_cols=60 Identities=8% Similarity=-0.165 Sum_probs=33.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005178 225 YSTIITCAKRCNLFDEAIEWFERMYKT--GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284 (710)
Q Consensus 225 ~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 284 (710)
+..+...|.+.|+++.|.+.|.++... +..--...+-.++..+...+++..+...+.++.
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 344555555666666666666665543 222234455556666666666666666665543
No 272
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=61.70 E-value=1.8e+02 Score=31.47 Aligned_cols=220 Identities=13% Similarity=0.028 Sum_probs=101.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--
Q 005178 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS-- 445 (710)
Q Consensus 368 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~-- 445 (710)
...++.-.|++|.|++.+-.. ...|.+.+.. ++...|-+.....++..-. + .| ..-+..||..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AI---aL~~~gLL~~~~~lls~~~--~--~~-~lN~arLI~~Yt~~F 367 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAI---GLASLKLFKIDSSTRLTKK--P--KR-DIRFANILANYTKSF 367 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHH---HHHHTTC----------------------CHHHHHHHHHTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHH---HHHHcCCccCCCcccccCC--C--cc-cccHHHHHHHHHHHh
Confidence 445556689999999877654 1224443333 3334555443111111100 0 01 2336777877765
Q ss_pred -CCCHHHHHHHHHHHHHcCCCcC-H-HHHHHHHHHHHhcCCHHHHH-----------HHHHHHHHCCCCC-C-HHHH---
Q 005178 446 -GGNVDNAIELFEEMSELGVAIN-V-MGCTCLIQCLGKARRIDDLV-----------RVFGVSIDRGVKP-D-DRLC--- 506 (710)
Q Consensus 446 -~g~~~~A~~~~~~m~~~~~~p~-~-~~~~~li~~~~~~g~~~~A~-----------~~~~~m~~~~~~p-~-~~~~--- 506 (710)
..+..+|.++|--+...+ .++ . ..+.++-......+.++.-+ .++++-.. -+.. | ....
T Consensus 368 ~~td~~~Al~Y~~li~l~~-g~~~~~~~~~~l~eLvletr~f~~LLG~i~~dG~r~~G~i~~~~~-li~l~d~~~~~~~i 445 (661)
T 2qx5_A 368 RYSDPRVAVEYLVLITLNE-GPTDVELCHEALRELVLETKEFTVLLGKIGRDGARIPGVIEERQP-LLHVRDEKEFLHTI 445 (661)
T ss_dssp TTTCHHHHHHHHHGGGGSC-CHHHHHHHHHHHHHHHHHHCCHHHHHCEECTTSCEECCHHHHTCG-GGTCSCHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHHhcccHHHHcCCcCCCCCcCcchHHHhhc-ccccccHHHHHHHH
Confidence 678888888887763321 011 1 12222222233333332211 11111000 0111 2 1112
Q ss_pred -HHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCC----c----------ccHHHHHHHHHHhccCCC---
Q 005178 507 -GCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTG----F----------ENIKEEFRNVIKDTEVDA--- 568 (710)
Q Consensus 507 -~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~----~----------~~~~~~a~~~~~~~~~~~--- 568 (710)
.....-+...|++++|+++|.-+.+.+--...+...|+.+... . .+....|..+.+.....+
T Consensus 446 ~~~aA~~ae~~G~~~dAi~LY~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y~~~~~~~ 525 (661)
T 2qx5_A 446 TEQAARRADEDGRIYDSILLYQLAEEYDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASIYFDNAGIS 525 (661)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHhcCchhh
Confidence 2233456678888888888876643221111122233222110 0 135556666665543321
Q ss_pred ------ChhhHHHHHHH-----HHhCCCHHHHHHHHHHHHHcCCCCc
Q 005178 569 ------RRPFCNCLIDI-----CRNRNLNERAHELLYLGTLYGLYPG 604 (710)
Q Consensus 569 ------~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~~~~~~~ 604 (710)
...++..|++. +...|+++.|.+.+++ .++.|.
T Consensus 526 ~~~~~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~---L~llPl 569 (661)
T 2qx5_A 526 RQIHVKNKEICMLLLNISSIRELYFNKQWQETLSQMEL---LDLLPF 569 (661)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH---TSCSCC
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh---CCCCCC
Confidence 22356665543 3789999999988885 455563
No 273
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=58.27 E-value=1.6e+02 Score=29.61 Aligned_cols=221 Identities=11% Similarity=0.018 Sum_probs=109.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCCHHHHH---
Q 005178 367 ALIKIYGKARWAKDALELWERMREN--KWPMD---FILYNTLLNMCADIGLVEEAERLFEDMKLSDY-CKPDNYSYT--- 437 (710)
Q Consensus 367 ~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~--- 437 (710)
.++..|...|++.+|.+++..+.+. ..... ..++-.-++.|...+++.++...+........ +.+++....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 4677788888888888887777652 11111 23455567778888888888888877654321 013332222
Q ss_pred -HHHHHHH-hCCCHHHHHHHHHHHHHc-C-C-Cc---CHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHCCCCCCHHHHHH
Q 005178 438 -AMLNIYG-SGGNVDNAIELFEEMSEL-G-V-AI---NVMGCTCLIQCLGKARRIDDLVRVFG-VSIDRGVKPDDRLCGC 508 (710)
Q Consensus 438 -~li~~~~-~~g~~~~A~~~~~~m~~~-~-~-~p---~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~~~~p~~~~~~~ 508 (710)
.-.-++. ..+++..|...|-+..+. . . .| +...|..+. + .-.+...+.-.++. +....-..|+...+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~-a-Ll~~~r~el~~~l~~~~~~~~~~pei~~l~~ 261 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLC-K-IMLGQSDDVNQLVSGKLAITYSGRDIDAMKS 261 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-H-HHTTCGGGHHHHHHSHHHHTTCSHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH-H-HHcCCHHHHHHHhccccccccCCccHHHHHH
Confidence 1223355 788899888887776431 1 0 01 122332222 2 22233333323222 2111113455555666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCcHHH---HHHHHHhhcCCcccHHHHHHHHHHhccCCC-ChhhHHHHHHHHHhCC
Q 005178 509 LLSVVSLCETSEDVGKVITCLQQANPKLVA---FLNLIEDNSTGFENIKEEFRNVIKDTEVDA-RRPFCNCLIDICRNRN 584 (710)
Q Consensus 509 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~L~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~l~~~~~~~g 584 (710)
++.+| ..+++.+..++++.....-..+.. -+..|.. .-.......++ +| .......+...+.-
T Consensus 262 L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~-----~Ir~~~L~~i~-----~pYsrIsl~~iA~~l~l-- 328 (394)
T 3txn_A 262 VAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYD-----TMLEQNLCRII-----EPYSRVQVAHVAESIQL-- 328 (394)
T ss_dssp HHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHH-----HHHHHHHHHHH-----TTCSEEEHHHHHHHHTC--
T ss_pred HHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHH-----HHHHHHHHHHh-----HhhceeeHHHHHHHHCc--
Confidence 66665 445666666665544221111111 1111111 00111111222 22 22345555555433
Q ss_pred CHHHHHHHHHHHHHcCCC
Q 005178 585 LNERAHELLYLGTLYGLY 602 (710)
Q Consensus 585 ~~~~A~~~~~~~~~~~~~ 602 (710)
..++++..+-+|+..|..
T Consensus 329 s~~evE~~L~~lI~dg~I 346 (394)
T 3txn_A 329 PMPQVEKKLSQMILDKKF 346 (394)
T ss_dssp CHHHHHHHHHHHHHTTSS
T ss_pred CHHHHHHHHHHHHHCCCe
Confidence 678899888888877654
No 274
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=57.57 E-value=1.3e+02 Score=28.32 Aligned_cols=117 Identities=12% Similarity=0.104 Sum_probs=72.7
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC--cCHHHHHHHHHHHHhcCC
Q 005178 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA--INVMGCTCLIQCLGKARR 483 (710)
Q Consensus 406 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~ 483 (710)
...+.|++++|++....-.+.. +-|...-..|++.+|-.|+++.|.+-++...+.... |-...|..+|.+-..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~--P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~--- 80 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQA--- 80 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH---
T ss_pred HHHhCCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHH---
Confidence 4557788899988888888776 678888888999999999999999888888774321 223345555543211
Q ss_pred HHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHH--hcCChHHHHHHHHHHHHhCC
Q 005178 484 IDDLVRVFGVSIDRGVKP-----DDRLCGCLLSVVS--LCETSEDVGKVITCLQQANP 534 (710)
Q Consensus 484 ~~~A~~~~~~m~~~~~~p-----~~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p 534 (710)
=.+...-+-.| ...-...++.+.. ..|+.++|..+-..+.+..|
T Consensus 81 -------R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap 131 (273)
T 1zbp_A 81 -------RKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ 131 (273)
T ss_dssp -------HHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred -------HHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCc
Confidence 11111211111 2223334454443 45888888887777765544
No 275
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=57.55 E-value=48 Score=25.65 Aligned_cols=77 Identities=10% Similarity=-0.028 Sum_probs=41.0
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005178 201 RQFQLIEQLANEMVSNEIELDNITYSTIIT--CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLS 278 (710)
Q Consensus 201 g~~~~A~~l~~~m~~~g~~p~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 278 (710)
...++|..+-+-+...+ + .-...+|+ .+...|++++|..+.+.+ +.||...|-+|.. .+.|..+++..
T Consensus 20 H~HqEA~tIAdwL~~~~---~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~ 89 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLG---Q-DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDR 89 (115)
T ss_dssp TCHHHHHHHHHHHHHTT---C-HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCC---c-HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHH
Confidence 34556666655555542 2 22223333 555666666666554333 2566666655543 35666666666
Q ss_pred HHHHHHhCC
Q 005178 279 LYERGVASG 287 (710)
Q Consensus 279 ~~~~~~~~g 287 (710)
-+.++..+|
T Consensus 90 rL~~la~sg 98 (115)
T 2uwj_G 90 RLAGLGGSS 98 (115)
T ss_dssp HHHHHHTCS
T ss_pred HHHHHHhCC
Confidence 665665554
No 276
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=56.78 E-value=1e+02 Score=31.47 Aligned_cols=95 Identities=9% Similarity=-0.120 Sum_probs=40.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCCCHHH--HHHHH
Q 005178 367 ALIKIYGKARWAKDALELWERMRENK--WPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY--CKPDNYS--YTAML 440 (710)
Q Consensus 367 ~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~--~~~li 440 (710)
.+...|.+.|+++.|.+.|.++...- ..--...+-.++..+...+++..+...+.++...-. ..++... ...-+
T Consensus 136 ~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~g 215 (429)
T 4b4t_R 136 NLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYG 215 (429)
T ss_dssp HHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHH
Confidence 34444444455555544444444321 111123444455555555555555555555433210 0122111 01111
Q ss_pred HHHHhCCCHHHHHHHHHHHHH
Q 005178 441 NIYGSGGNVDNAIELFEEMSE 461 (710)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~m~~ 461 (710)
-.+...+++..|...|-++..
T Consensus 216 l~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 216 IHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHhChHHHHHHHHHHHhc
Confidence 123345666666666655543
No 277
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=51.50 E-value=47 Score=28.15 Aligned_cols=51 Identities=14% Similarity=0.134 Sum_probs=28.3
Q ss_pred HHHHHHHHHHcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 005178 452 AIELFEEMSELGVAIN-VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502 (710)
Q Consensus 452 A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 502 (710)
+..+|..|...|+.-. ...|......+...|++++|..+|+.-++.+-.|-
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 5555665655554433 33455555555566666666666666665555553
No 278
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=50.71 E-value=2.6e+02 Score=29.97 Aligned_cols=115 Identities=10% Similarity=0.075 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHH----HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005178 342 KPGLARSLFDEMVESGLTPDEKTLTALIK----IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417 (710)
Q Consensus 342 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~----~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 417 (710)
+.+.|...|....... ..+......+-. .....+...++...+....... .+.......+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHH
Confidence 5566666666665432 122222221221 2222332334444444443322 23222333333344557777777
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 005178 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461 (710)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (710)
..|..|.... ........-+..++...|+.++|..+|..+.+
T Consensus 306 ~~~~~l~~~~--~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEA--KEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTG--GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHccccc--cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 7776665432 12333344455566666777777776666543
No 279
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=49.98 E-value=1.4e+02 Score=26.42 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=7.9
Q ss_pred CCHHHHHHHHHHHHHcCC
Q 005178 325 PNLVVYNTLLEAMGKAGK 342 (710)
Q Consensus 325 p~~~~~~~li~~~~~~g~ 342 (710)
++..+-...+.++.+.|.
T Consensus 124 ~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 124 EDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp SSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHcCC
Confidence 344444444444444443
No 280
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=48.58 E-value=1.2e+02 Score=25.55 Aligned_cols=51 Identities=12% Similarity=0.070 Sum_probs=23.0
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc
Q 005178 416 AERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466 (710)
Q Consensus 416 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 466 (710)
+.++|..|...++...-...|......+...|++.+|..+|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 444444444444333334444444444444444444444444444443333
No 281
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=46.78 E-value=1.4e+02 Score=25.62 Aligned_cols=52 Identities=8% Similarity=0.215 Sum_probs=30.1
Q ss_pred HHHHHHHHHHcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 005178 452 AIELFEEMSELGVAIN-VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503 (710)
Q Consensus 452 A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 503 (710)
+..+|..|...|+.-. ...|......+...|++.+|.++|+.-++.+-.|-.
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 4555666666555433 334555555566666666666666666666666643
No 282
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=45.36 E-value=1.6e+02 Score=25.92 Aligned_cols=17 Identities=18% Similarity=0.030 Sum_probs=7.1
Q ss_pred CHHHHHHHHHHHHHcCC
Q 005178 256 DEVTYSAILDVYAKSGK 272 (710)
Q Consensus 256 ~~~~~~~li~~~~~~g~ 272 (710)
+..+-...+..+.+.|.
T Consensus 32 ~~~vR~~A~~~L~~~~~ 48 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGD 48 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 44444444444444443
No 283
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=43.26 E-value=43 Score=30.47 Aligned_cols=19 Identities=16% Similarity=0.067 Sum_probs=8.4
Q ss_pred HHcCCHHHHHHHHHHHHhC
Q 005178 268 AKSGKVEEVLSLYERGVAS 286 (710)
Q Consensus 268 ~~~g~~~~A~~~~~~~~~~ 286 (710)
++.|+.+.+..+++.+.+.
T Consensus 17 ~~~g~~~~v~~Ll~~~~~~ 35 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLFQQG 35 (241)
T ss_dssp HHTTCHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHhc
Confidence 3444444444444444333
No 284
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=41.33 E-value=2.5e+02 Score=27.06 Aligned_cols=51 Identities=6% Similarity=-0.084 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHHhCCc
Q 005178 485 DDLVRVFGVSIDRGVKPDDR--LCGCLLSVVSLCETSEDVGKVITCLQQANPK 535 (710)
Q Consensus 485 ~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 535 (710)
...+++---+-...++|... +...-+..+.+.+++..|..+-+++.++.|.
T Consensus 187 kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 239 (325)
T 3mv2_A 187 VRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISS 239 (325)
T ss_dssp HHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 34444444444555666544 4445566777888888888888887777764
No 285
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=41.04 E-value=69 Score=31.67 Aligned_cols=25 Identities=0% Similarity=-0.005 Sum_probs=18.6
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHH
Q 005178 190 YNVTMKSLRFGRQFQLIEQLANEMV 214 (710)
Q Consensus 190 ~~~li~~~~~~g~~~~A~~l~~~m~ 214 (710)
...+|.-|...++.++|...++++.
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 4567777777888888888877764
No 286
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=40.12 E-value=2.8e+02 Score=27.27 Aligned_cols=69 Identities=10% Similarity=0.157 Sum_probs=42.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHH
Q 005178 436 YTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR--IDDLVRVFGVSIDRGVKPDDRL 505 (710)
Q Consensus 436 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~~ 505 (710)
...++.=|...|+.++|.+.++++....+. ...+...+..++-+.++ .+...+++..+...|+-+....
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~ 290 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 290 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 467777788888888888888887642111 23344455555554333 3456777777777666544433
No 287
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=39.43 E-value=1.8e+02 Score=27.94 Aligned_cols=25 Identities=16% Similarity=0.359 Sum_probs=18.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 005178 295 FSVLGKMFGESGDYDGIRYVLQEMK 319 (710)
Q Consensus 295 ~~~li~~~~~~g~~~~A~~~~~~m~ 319 (710)
...++.-|...|+.++|...++++.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 3567777878888888888877764
No 288
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=39.10 E-value=76 Score=28.82 Aligned_cols=52 Identities=12% Similarity=0.095 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 005178 451 NAIELFEEMSELGVAIN-VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502 (710)
Q Consensus 451 ~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 502 (710)
.+..+|..|...|+.-. ...|......+...|++.+|..+|+.-++.+-.|-
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 45566666666555433 34455555566666666666666666666555653
No 289
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=37.15 E-value=2e+02 Score=24.65 Aligned_cols=45 Identities=7% Similarity=0.016 Sum_probs=21.3
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005178 487 LVRVFGVSIDRGVKPD-DRLCGCLLSVVSLCETSEDVGKVITCLQQ 531 (710)
Q Consensus 487 A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 531 (710)
+..+|..|...||.-. ...|......+...|++.+|.++|+...+
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~ 124 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQ 124 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4445555554444332 22444444445555555555555555443
No 290
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=36.50 E-value=28 Score=32.67 Aligned_cols=18 Identities=17% Similarity=0.200 Sum_probs=9.3
Q ss_pred HHHHHHccCChHHHHHHH
Q 005178 193 TMKSLRFGRQFQLIEQLA 210 (710)
Q Consensus 193 li~~~~~~g~~~~A~~l~ 210 (710)
.+...++.|+++....++
T Consensus 8 ~L~~A~~~g~~~~v~~Ll 25 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLL 25 (285)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 344455666655444443
No 291
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=36.43 E-value=1.5e+02 Score=26.95 Aligned_cols=72 Identities=14% Similarity=0.200 Sum_probs=51.9
Q ss_pred CCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 005178 183 FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELD-NITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDE 257 (710)
Q Consensus 183 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 257 (710)
+..|..-...-|..--. .+++..+|..|...||.-. ...|......+...|++.+|.++|+.-++.+-.|-.
T Consensus 113 YknD~RyLklWl~Ya~~---~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 113 YKDDVRYLRIWMQYVNY---IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp GTTCHHHHHHHHHHHTT---CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH
T ss_pred ccCCHHHHHHHHHHHHc---cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 45565543333332222 2577899999999987654 456777777888999999999999999998877743
No 292
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=35.98 E-value=41 Score=31.48 Aligned_cols=10 Identities=30% Similarity=0.268 Sum_probs=4.0
Q ss_pred HcCCHHHHHH
Q 005178 409 DIGLVEEAER 418 (710)
Q Consensus 409 ~~g~~~~A~~ 418 (710)
..|+.+.+..
T Consensus 157 ~~~~~~~v~~ 166 (285)
T 1wdy_A 157 EKGHVEVLKI 166 (285)
T ss_dssp HHTCHHHHHH
T ss_pred HcCCHHHHHH
Confidence 3444443333
No 293
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=35.70 E-value=37 Score=30.88 Aligned_cols=85 Identities=12% Similarity=0.080 Sum_probs=38.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHh
Q 005178 299 GKMFGESGDYDGIRYVLQEMKSLGVQPNLVV--YNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKT--LTALIKIYGK 374 (710)
Q Consensus 299 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~li~~~~~ 374 (710)
+...+..|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+- ++.+.+.|..++... -...+...+.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~l~~A~~ 88 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV----VRLLVTAGASPMALDRHGQTAAHLACE 88 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHH----HHHHHHcCCCccccCCCCCCHHHHHHH
Confidence 3445566777777777766665554333211 1123334445555543 333344444332211 0112333345
Q ss_pred cCCHHHHHHHHHH
Q 005178 375 ARWAKDALELWER 387 (710)
Q Consensus 375 ~g~~~~A~~~~~~ 387 (710)
.|+.+....+++.
T Consensus 89 ~~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 89 HRSPTCLRALLDS 101 (241)
T ss_dssp TTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHc
Confidence 5555544444443
No 294
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=33.18 E-value=5.8e+02 Score=28.86 Aligned_cols=12 Identities=8% Similarity=0.158 Sum_probs=7.5
Q ss_pred HHHHHHHHHHhc
Q 005178 553 IKEEFRNVIKDT 564 (710)
Q Consensus 553 ~~~~a~~~~~~~ 564 (710)
.+++.+.+++.-
T Consensus 850 ~~~~~~~f~~~~ 861 (909)
T 4fke_A 850 ELQQLEQFKKNN 861 (909)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHhhC
Confidence 566666666553
No 295
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=33.18 E-value=2.6e+02 Score=25.56 Aligned_cols=26 Identities=4% Similarity=-0.128 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005178 292 PIAFSVLGKMFGESGDYDGIRYVLQE 317 (710)
Q Consensus 292 ~~~~~~li~~~~~~g~~~~A~~~~~~ 317 (710)
.......+..+.+.|+-++|.++|-+
T Consensus 91 ~~~~r~~v~~L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 91 IVHLKSGTENMIKLGLPEQALDLFLQ 116 (235)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChhHHHHHHHH
Confidence 33333444444555555555555443
No 296
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=32.87 E-value=1.7e+02 Score=23.77 Aligned_cols=66 Identities=9% Similarity=0.111 Sum_probs=36.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCC
Q 005178 436 YTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR--IDDLVRVFGVSIDRGVKPD 502 (710)
Q Consensus 436 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p~ 502 (710)
...++.-|...|+.++|.+.++++..... ....+...+..++-+.+. .+.+..++..+...|+-+.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 34566667777777777777777643111 122334444444444432 3456666666666665443
No 297
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=31.86 E-value=97 Score=29.98 Aligned_cols=57 Identities=18% Similarity=0.114 Sum_probs=27.3
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 005178 191 NVTMKSLRFGRQFQLIEQLANEMVSNEIELDNI---TYSTIITCAKRCNLFDEAIEWFERMYKTGLMP 255 (710)
Q Consensus 191 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 255 (710)
+..+..-++.|+++-+..+++ .|..++.. .-.+-+...+..|+.+-+ +.+++.|..+
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~----~Gadvn~~~~~~g~TpLh~A~~~g~~~iv----~~Ll~~ga~~ 85 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLE----GGANVNFQEEEGGWTPLHNAVQMSREDIV----ELLLRHGADP 85 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH----HTCCTTCCCTTTCCCHHHHHHHTTCHHHH----HHHHHTTCCT
T ss_pred ChHHHHHHHcCCHHHHHHHHH----CCCCCCccCCCCCcCHHHHHHHcCCHHHH----HHHHHcCCch
Confidence 334444567788766655554 45444321 111233444556776543 3344555433
No 298
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=31.08 E-value=2.6e+02 Score=24.16 Aligned_cols=95 Identities=14% Similarity=-0.002 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcC--C-----------cc---cHH---HHHHH-----H
Q 005178 505 LCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNST--G-----------FE---NIK---EEFRN-----V 560 (710)
Q Consensus 505 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~--~-----------~~---~~~---~~a~~-----~ 560 (710)
.++.+...|.+.|+.+||+..+..-.+..|-..++-+++-.-.. . .+ +.. -+.++ +
T Consensus 116 Fy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnliyeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~lHe~~s~~~ 195 (242)
T 3kae_A 116 FESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLLLENKVPQKRDKENVRQTGRRGIEEEYVSDSIEFHESLSPSL 195 (242)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHTTCCCCCC-----------CHHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHHhhcCCCcccchHHHHhhhhccchhhhhhhHHHHHHhccHHH
Confidence 44555666777777777777777666666655554444422100 0 00 000 01121 2
Q ss_pred HHh-ccCCCChhhH--HHHHHHHHhCCCHHHHHHHHHHHHHc
Q 005178 561 IKD-TEVDARRPFC--NCLIDICRNRNLNERAHELLYLGTLY 599 (710)
Q Consensus 561 ~~~-~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~ 599 (710)
+++ +..-|....| .....-|...|..++.+.+|......
T Consensus 196 ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~k 237 (242)
T 3kae_A 196 VKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRK 237 (242)
T ss_dssp HHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhc
Confidence 333 3445554433 22344577899999999999876544
No 299
>3qd7_X Uncharacterized protein YDAL; alpha/beta/alpha fold, endonuclease, hydrolase; 2.30A {Escherichia coli}
Probab=29.92 E-value=69 Score=26.57 Aligned_cols=65 Identities=12% Similarity=0.137 Sum_probs=43.9
Q ss_pred hhcccccChHHHHHHHHHHHHHHHHHHHhccCCCCeeEEEeccCcccchh--hHHHHHHHHhhhcC--CCccccC
Q 005178 614 SLDVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQLFLAETGTGTHKFSQ--GLATAFASHVNKLA--APFRQSE 684 (710)
Q Consensus 614 ~~~~~~~~~G~~~~Al~~~~~~~~~~~~~~~~~p~~~~i~~~~~~~~~~~--~~~~~~~~~l~~l~--~~~~~~~ 684 (710)
.++++++....|..++..|+. .....|. .++.|++|.|.++... -++..|...|++.. .-|+.++
T Consensus 49 ~LDLHG~~~~EA~~~L~~fL~---~a~~~g~---r~V~IIHGKG~gs~~~~~vLk~~V~~wL~~~~~V~~f~~a~ 117 (137)
T 3qd7_X 49 SLNLLRQPVEECRKMVFSFIQ---QALADGL---RNVLIIHGKGRDDKSHANIVRSYVARWLTEFDDVQAYCTAL 117 (137)
T ss_dssp EEECTTCCHHHHHHHHHHHHH---HHHHTTC---SEEEEECCCCSSTTSHHHHHHHHHHHHHHTSTTEEEEEECC
T ss_pred EEECCCCCHHHHHHHHHHHHH---HHHHCCC---CEEEEEECCCCCCCCchHHHHHHHHHHHhcCCceeEEeecC
Confidence 357888877777777776665 3344442 3588999999986542 35888999998733 4455554
No 300
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=29.89 E-value=3.2e+02 Score=24.95 Aligned_cols=28 Identities=21% Similarity=0.265 Sum_probs=14.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005178 396 DFILYNTLLNMCADIGLVEEAERLFEDM 423 (710)
Q Consensus 396 ~~~~~~~li~~~~~~g~~~~A~~~~~~~ 423 (710)
+.......+..+.+.|+.++|.++|-+.
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 3444444555555566666666555443
No 301
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=28.96 E-value=3.5e+02 Score=24.96 Aligned_cols=112 Identities=13% Similarity=0.022 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 005178 256 DEVTYSAILDVYAKSGK-----VEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVY 330 (710)
Q Consensus 256 ~~~~~~~li~~~~~~g~-----~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 330 (710)
+..+-...+.++.+.+. ...+...+..+.. .++..+-...+.++...|+. .+...+..+.. .++..+-
T Consensus 104 ~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~---d~~~~vR~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr 176 (280)
T 1oyz_A 104 SACVRATAIESTAQRCKKNPIYSPKIVEQSQITAF---DKSTNVRRATAFAISVINDK-ATIPLLINLLK---DPNGDVR 176 (280)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTT---CSCHHHHHHHHHHHHTC----CCHHHHHHHHT---CSSHHHH
T ss_pred CHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhh---CCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHc---CCCHHHH
Confidence 44444444444444331 2233333333333 24555555555555555542 23333333333 2344444
Q ss_pred HHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 005178 331 NTLLEAMGKAG-KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARW 377 (710)
Q Consensus 331 ~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 377 (710)
...+.++...+ ....+...+..+.. .++..+-...+.++.+.|+
T Consensus 177 ~~a~~aL~~~~~~~~~~~~~L~~~l~---d~~~~vR~~A~~aL~~~~~ 221 (280)
T 1oyz_A 177 NWAAFAININKYDNSDIRDCFVEMLQ---DKNEEVRIEAIIGLSYRKD 221 (280)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhCC
Confidence 44444444443 12233333333332 2344444444444444443
No 302
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=28.07 E-value=4.9e+02 Score=26.43 Aligned_cols=33 Identities=12% Similarity=0.038 Sum_probs=19.4
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005178 374 KARWAKDALELWERMRENKWPMDFILYNTLLNM 406 (710)
Q Consensus 374 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 406 (710)
+.++.+.|+..+.+|.+.|..|....-..++.+
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a 299 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIA 299 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 346777777777777777665544433333333
No 303
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=26.11 E-value=1.6e+02 Score=25.58 Aligned_cols=22 Identities=9% Similarity=-0.017 Sum_probs=9.3
Q ss_pred HcCCHHHHHHHHHHHHhCCCCC
Q 005178 269 KSGKVEEVLSLYERGVASGWKP 290 (710)
Q Consensus 269 ~~g~~~~A~~~~~~~~~~g~~~ 290 (710)
..|+.+.-.++.+.+++.|..+
T Consensus 47 ~~~~~~~~~~iv~~Ll~~Gadv 68 (186)
T 3t8k_A 47 RNNNDEARYKISMFLINKGADI 68 (186)
T ss_dssp TCSCHHHHHHHHHHHHHTTCCS
T ss_pred HcCCcchHHHHHHHHHHCCCCC
Confidence 3444433344444444444333
No 304
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=25.90 E-value=1.5e+02 Score=24.95 Aligned_cols=65 Identities=9% Similarity=0.132 Sum_probs=34.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCC
Q 005178 436 YTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR--IDDLVRVFGVSIDRGVKP 501 (710)
Q Consensus 436 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p 501 (710)
...++.-|...|+.++|.+.++++....+ ....+...+..++-+.+. .+.+..++..+...|+-+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 44566667777777777777776643111 112333444444444322 345566666666555543
No 305
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=25.74 E-value=2.7e+02 Score=24.05 Aligned_cols=27 Identities=7% Similarity=-0.150 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005178 469 MGCTCLIQCLGKARRIDDLVRVFGVSI 495 (710)
Q Consensus 469 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 495 (710)
..|+.+...|.+.|+.++|++.|..--
T Consensus 115 fFy~l~a~lltq~g~r~EaI~y~~~Sf 141 (242)
T 3kae_A 115 FFESLLGDLCTLSGYREEGIGHYVRSF 141 (242)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHhhhHhhhhc
Confidence 456777778888999999998887543
No 306
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=25.58 E-value=4e+02 Score=24.53 Aligned_cols=18 Identities=6% Similarity=-0.243 Sum_probs=6.9
Q ss_pred CCHHHHHHHHHHHHhcCC
Q 005178 360 PDEKTLTALIKIYGKARW 377 (710)
Q Consensus 360 p~~~~~~~li~~~~~~g~ 377 (710)
++..+-...+.++.+.|+
T Consensus 140 ~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 140 KSTNVRRATAFAISVIND 157 (280)
T ss_dssp SCHHHHHHHHHHHHTC--
T ss_pred CCHHHHHHHHHHHHhcCC
Confidence 344444444444444443
No 307
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=25.53 E-value=1.8e+02 Score=30.19 Aligned_cols=67 Identities=6% Similarity=-0.191 Sum_probs=38.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHH
Q 005178 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFL 540 (710)
Q Consensus 473 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 540 (710)
.|.+...-...++.|...|.++...... +...|+.|.-.....|+.-+|.-.|-+..-.........
T Consensus 157 ~LGDL~RY~~~~~~A~~~Y~~A~~~~P~-~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~ 223 (497)
T 1ya0_A 157 HLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAAS 223 (497)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHH
T ss_pred HcccHHHHHHHHHHHHHHHHHHHHhCCC-CCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHH
Confidence 3444444556677888888877763222 334677777766667776666655555444333334433
No 308
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=25.44 E-value=7.7e+02 Score=27.82 Aligned_cols=90 Identities=10% Similarity=0.076 Sum_probs=51.4
Q ss_pred HHHHHHHHHcCC---HHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005178 261 SAILDVYAKSGK---VEEVLSLYERGVASG----WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTL 333 (710)
Q Consensus 261 ~~li~~~~~~g~---~~~A~~~~~~~~~~g----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 333 (710)
..++...|+.|. .++|.+.|+.....+ ++||.. ..+...-.+.|..++-..+++..... .+..--..+
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~---~~~~ek~~l 764 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQA---QLVNEADKL 764 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHC---CSHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHcc---CCHHHHHHH
Confidence 345666677775 456777777765432 344432 22223334556666666666666653 244445566
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 005178 334 LEAMGKAGKPGLARSLFDEMVE 355 (710)
Q Consensus 334 i~~~~~~g~~~~A~~~~~~m~~ 355 (710)
+.+++...+.+...++++....
T Consensus 765 l~aL~~~~d~~~l~~~L~~~l~ 786 (909)
T 4fke_A 765 RSALACSNEVWLLNRYLGYTLN 786 (909)
T ss_dssp HHHHTTCCCHHHHHHHHHHTTC
T ss_pred HHHhCCCCCHHHHHHHHHHHhC
Confidence 7777767777666666666553
No 309
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=25.44 E-value=1.4e+02 Score=22.13 Aligned_cols=64 Identities=17% Similarity=0.189 Sum_probs=41.2
Q ss_pred hhcccccChHHHHHHHHHHHHHHHHHHHhccCCCCeeEEEeccCcccchhhHHHHHHHHhhhcC--CCccccCCCC
Q 005178 614 SLDVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQLFLAETGTGTHKFSQGLATAFASHVNKLA--APFRQSEGKA 687 (710)
Q Consensus 614 ~~~~~~~~~G~~~~Al~~~~~~~~~~~~~~~~~p~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~~ 687 (710)
..+++++....+..+++.|+. .....|. .+..|..|.|.- -++..|...|++-. ..|+.++.+.
T Consensus 6 ~lDLhG~~~~eA~~~l~~fl~---~a~~~g~---~~v~IIHGkG~G----vLr~~V~~~L~~~~~V~~f~~a~~~~ 71 (83)
T 2zqe_A 6 EVDLRGLTVAEALLEVDQALE---EARALGL---STLRLLHGKGTG----ALRQAIREALRRDKRVESFADAPPGE 71 (83)
T ss_dssp EEECTTCCHHHHHHHHHHHHH---HHHHTTC---SEEEEECCSTTS----HHHHHHHHHHHHCTTEEEEEECCTTT
T ss_pred EEECCCCCHHHHHHHHHHHHH---HHHHCCC---CEEEEEECCCch----HHHHHHHHHHhcCCceeEEEEcCccc
Confidence 356788876666666666655 4444442 358899998872 45888888888643 3466665553
No 310
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=24.92 E-value=2.2e+02 Score=27.30 Aligned_cols=25 Identities=0% Similarity=-0.005 Sum_probs=18.0
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHH
Q 005178 190 YNVTMKSLRFGRQFQLIEQLANEMV 214 (710)
Q Consensus 190 ~~~li~~~~~~g~~~~A~~l~~~m~ 214 (710)
...+|.-|...|+.++|...++++.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 3556777777788888888777653
No 311
>1vje_A Autoinducer-2 production protein LUXS; structural genomics, hydrolase; 1.64A {Deinococcus radiodurans} SCOP: d.185.1.2 PDB: 1vgx_A 1inn_A 1j6v_A 1vh2_A
Probab=23.89 E-value=85 Score=26.71 Aligned_cols=60 Identities=8% Similarity=-0.006 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCeeEEEeccCcccchhhHHHHHHHHhhhcCCCccc
Q 005178 623 GAAQTALEEWMWTLAKIVLREEVLPQLFLAETGTGTHKFSQGLATAFASHVNKLAAPFRQ 682 (710)
Q Consensus 623 G~~~~Al~~~~~~~~~~~~~~~~~p~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 682 (710)
-..++.++.|.+.++.+.+.++..|+..-+.||+...--..+.+......|.+...-...
T Consensus 94 ~~~~~v~~~~~~~l~~Il~~~e~VPga~~~qCGny~~HsL~~Ak~~A~~~L~~~l~~~~~ 153 (166)
T 1vje_A 94 PDEQGVMKAFEAALKDTAGHDQPIPGVSELECGNYRDHDLAAARQHARDVLDQGLKVQET 153 (166)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCSCCTTCSTTTCTTTTCCCHHHHHHHHHHHHHHCCCBCCC
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCCcChhcCCChHhCCHHHHHHHHHHHHHhhhccCch
Confidence 357788888888888887755449999999999988765566666677777665544433
No 312
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=23.10 E-value=50 Score=29.87 Aligned_cols=210 Identities=13% Similarity=0.003 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005178 207 EQLANEMVSNEIELDNITYS--TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284 (710)
Q Consensus 207 ~~l~~~m~~~g~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 284 (710)
.++++.+.+.|..++..... +.+...+..|+.+-+..+++.-.......+..-.+.+..+..... .++++.+.
T Consensus 22 ~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~-----~~~v~~Ll 96 (240)
T 3eu9_A 22 YERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGH-----LSMVVQLM 96 (240)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTC-----HHHHHHHH
T ss_pred hHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCC-----HHHHHHHH
Q ss_pred hCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 005178 285 ASGWKPDPIAFS--VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYN--TLLEAMGKAGKPGLARSLFDEMVESGLTP 360 (710)
Q Consensus 285 ~~g~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~p 360 (710)
+.|..++..... +.+...+..|+.+ +++.+.+.|..++..... +.+...+..+......+++.+....--..
T Consensus 97 ~~g~~~~~~~~~g~t~l~~A~~~~~~~----~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~ 172 (240)
T 3eu9_A 97 KYGADPSLIDGEGCSCIHLAAQFGHTS----IVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLG 172 (240)
T ss_dssp HTTCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCC
T ss_pred HcCCCCcccCCCCCCHHHHHHHcCHHH----HHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchh
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 005178 361 DEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427 (710)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 427 (710)
+...-.+.+...+..|+.+-+..+++. ...+......-.+.+...++.|+.+-+..+++...+.+
T Consensus 173 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~ 237 (240)
T 3eu9_A 173 DKYHKNTALHWAVLAGNTTVISLLLEA--GANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKG 237 (240)
T ss_dssp CTTTCCCHHHHHHHHTCHHHHHHHHHH--TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC----
T ss_pred hccCCCcHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhccC
No 313
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=22.75 E-value=3.1e+02 Score=22.22 Aligned_cols=64 Identities=11% Similarity=0.275 Sum_probs=35.9
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCC
Q 005178 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNL--FDEAIEWFERMYKTGLM 254 (710)
Q Consensus 190 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~ 254 (710)
.+.++.-|...|+.++|...++++..... ........+..++-+.+. .+.+..++..+...|+-
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 45677778888888888888887742111 112233333334444332 34566666666666544
No 314
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=22.54 E-value=3.7e+02 Score=23.11 Aligned_cols=10 Identities=20% Similarity=0.225 Sum_probs=3.7
Q ss_pred HHHHHHHHcC
Q 005178 402 TLLNMCADIG 411 (710)
Q Consensus 402 ~li~~~~~~g 411 (710)
..+.++.+.+
T Consensus 126 ~a~~aL~~~~ 135 (201)
T 3ltj_A 126 AAAFALGEIG 135 (201)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 3333333333
No 315
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=22.37 E-value=3.5e+02 Score=23.01 Aligned_cols=50 Identities=8% Similarity=-0.061 Sum_probs=28.2
Q ss_pred CChHHHHHHHHHHHHCCCCC--CHHHHHHHHH-H-----HHHcCCHHHHHHHHHHHHH
Q 005178 201 RQFQLIEQLANEMVSNEIEL--DNITYSTIIT-C-----AKRCNLFDEAIEWFERMYK 250 (710)
Q Consensus 201 g~~~~A~~l~~~m~~~g~~p--~~~~~~~li~-~-----~~~~g~~~~A~~~~~~m~~ 250 (710)
|++-+|-++|+..-.....+ ....|..||. . ..+.|+...|..++.+...
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 66667767776666553333 3344555554 2 2345666666666666544
No 316
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=22.25 E-value=6.2e+02 Score=25.63 Aligned_cols=33 Identities=15% Similarity=0.152 Sum_probs=16.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005178 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIY 372 (710)
Q Consensus 340 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 372 (710)
.++.+.|+.++.+|.+.|..|....-..++.++
T Consensus 268 gsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~ 300 (447)
T 3pvs_A 268 GSAPDAALYWYARIITAGGDPLYVARRCLAIAS 300 (447)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 455666666666666665544433333333333
No 317
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=22.12 E-value=3.4e+02 Score=22.56 Aligned_cols=60 Identities=10% Similarity=0.059 Sum_probs=33.8
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 005178 212 EMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK 272 (710)
Q Consensus 212 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 272 (710)
.+.+.|++++. .-..++..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 17 ~l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 17 SIKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 34555655333 2334445555555566777777777766655566666666666666654
No 318
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=21.70 E-value=2.7e+02 Score=23.36 Aligned_cols=64 Identities=11% Similarity=0.275 Sum_probs=35.8
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCC
Q 005178 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNL--FDEAIEWFERMYKTGLM 254 (710)
Q Consensus 190 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~ 254 (710)
.+.++.-|...|+.++|...++++..... ........+..++-+.+. .+.+..++..+...|+-
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 45677778888888888888887742111 112233333334444222 34566666666665544
No 319
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=21.66 E-value=1.1e+02 Score=27.28 Aligned_cols=14 Identities=36% Similarity=0.349 Sum_probs=6.3
Q ss_pred HHcCCHHHHHHHHH
Q 005178 268 AKSGKVEEVLSLYE 281 (710)
Q Consensus 268 ~~~g~~~~A~~~~~ 281 (710)
++.|+.+....+++
T Consensus 14 ~~~g~~~~v~~ll~ 27 (231)
T 3aji_A 14 AYSGKLDELKERIL 27 (231)
T ss_dssp HHHTCHHHHHHHHH
T ss_pred HHhCCHHHHHHHHH
Confidence 34444444444443
No 320
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=21.16 E-value=68 Score=30.35 Aligned_cols=10 Identities=0% Similarity=-0.107 Sum_probs=4.4
Q ss_pred HHHCCCCCCH
Q 005178 494 SIDRGVKPDD 503 (710)
Q Consensus 494 m~~~~~~p~~ 503 (710)
+++.|..++.
T Consensus 214 Ll~~gad~~~ 223 (285)
T 3kea_A 214 LFKYDINIYS 223 (285)
T ss_dssp HTTSCBCSTT
T ss_pred HHHcCCCCCC
Confidence 3344544443
No 321
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=20.84 E-value=3e+02 Score=22.71 Aligned_cols=66 Identities=9% Similarity=0.123 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 005178 345 LARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411 (710)
Q Consensus 345 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 411 (710)
....+.+.+.+.|+..+..-.. ++..+...+..-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 5 ~~~~~~~~l~~~g~r~T~qR~~-Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 5 ELKEALETLKETGVRITPQRHA-ILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHH-HHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCCCHHHHH-HHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
No 322
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=20.27 E-value=4.7e+02 Score=23.46 Aligned_cols=33 Identities=9% Similarity=0.279 Sum_probs=17.0
Q ss_pred HHHHHHHH--ccCChHHHHHHHHHHHHCCCCCCHH
Q 005178 191 NVTMKSLR--FGRQFQLIEQLANEMVSNEIELDNI 223 (710)
Q Consensus 191 ~~li~~~~--~~g~~~~A~~l~~~m~~~g~~p~~~ 223 (710)
..+..+++ +.++|.+-..+++.++..+..-...
T Consensus 21 ~~~c~aFR~~r~~dFrq~rdi~eall~~~l~~~~~ 55 (235)
T 3bu8_A 21 HEALRAFRGSRYGDFRQIRDIMQALLVRPLGKEHT 55 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTTSCCCCCHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHhCccccccc
Confidence 34444443 2235555666666666566554433
Done!